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Sample records for ae tauschii genome

  1. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The current limitations in genome sequencing technology require the construction of physical maps for high-quality draft sequences of large plant genomes, such as that of Aegilops tauschii, the wheat D-genome progenitor. To construct a physical map of the Ae. tauschii genome, we fingerprinted 461,70...

  2. Effective transfer of chromosomes carrying leaf rust resistance genes from Aegilops tauschii Coss. into hexaploid triticale (X Triticosecale Witt.) using Ae. tauschii × Secale cereale amphiploid forms.

    PubMed

    Kwiatek, Michał; Majka, Maciej; Wiśniewska, Halina; Apolinarska, Barbara; Belter, Jolanta

    2015-05-01

    This paper shows the results of effective uses of a molecular cytogenetics toolbox and molecular marker to transfer leaf rust resistance genes from Aegilops tauschii × Secale cereale (DDRR, 2n = 4x = 28) amphiploid forms to triticale cv. Bogo (AABBRR, 2n = 6x = 42). The molecular markers of resistance genes and in situ hybridization analysis of mitotic metaphase of root meristems confirmed the stable inheritance of chromosome 3D segments carrying Lr32 from the BC2F2 to the BC2F5 generation of (Ae. tauschii × S. cereale) × triticale hybrids. The chromosome pairing analysis during metaphase I of meiosis of BC2F4 and BC2F5 hybrids showed increasing regular bivalent formation of 3D chromosome pairs and decreasing number of univalents in subsequent generations. The results indicate that using amphiploid forms as a bridge between wild and cultivated forms can be a successful technology to transfer the D-genome chromatin carrying leaf rust resistance genes into triticale.

  3. Effective transfer of chromosomes carrying leaf rust resistance genes from Aegilops tauschii Coss. into hexaploid triticale (X Triticosecale Witt.) using Ae. tauschii × Secale cereale amphiploid forms.

    PubMed

    Kwiatek, Michał; Majka, Maciej; Wiśniewska, Halina; Apolinarska, Barbara; Belter, Jolanta

    2015-05-01

    This paper shows the results of effective uses of a molecular cytogenetics toolbox and molecular marker to transfer leaf rust resistance genes from Aegilops tauschii × Secale cereale (DDRR, 2n = 4x = 28) amphiploid forms to triticale cv. Bogo (AABBRR, 2n = 6x = 42). The molecular markers of resistance genes and in situ hybridization analysis of mitotic metaphase of root meristems confirmed the stable inheritance of chromosome 3D segments carrying Lr32 from the BC2F2 to the BC2F5 generation of (Ae. tauschii × S. cereale) × triticale hybrids. The chromosome pairing analysis during metaphase I of meiosis of BC2F4 and BC2F5 hybrids showed increasing regular bivalent formation of 3D chromosome pairs and decreasing number of univalents in subsequent generations. The results indicate that using amphiploid forms as a bridge between wild and cultivated forms can be a successful technology to transfer the D-genome chromatin carrying leaf rust resistance genes into triticale. PMID:25502891

  4. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

    PubMed Central

    Luo, Ming-Cheng; Gu, Yong Q.; You, Frank M.; Deal, Karin R.; Ma, Yaqin; Hu, Yuqin; Huo, Naxin; Wang, Yi; Wang, Jirui; Chen, Shiyong; Jorgensen, Chad M.; Zhang, Yong; McGuire, Patrick E.; Pasternak, Shiran; Stein, Joshua C.; Ware, Doreen; Kramer, Melissa; McCombie, W. Richard; Kianian, Shahryar F.; Martis, Mihaela M.; Mayer, Klaus F. X.; Sehgal, Sunish K.; Li, Wanlong; Gill, Bikram S.; Bevan, Michael W.; Šimková, Hana; Doležel, Jaroslav; Weining, Song; Lazo, Gerard R.; Anderson, Olin D.; Dvorak, Jan

    2013-01-01

    The current limitations in genome sequencing technology require the construction of physical maps for high-quality draft sequences of large plant genomes, such as that of Aegilops tauschii, the wheat D-genome progenitor. To construct a physical map of the Ae. tauschii genome, we fingerprinted 461,706 bacterial artificial chromosome clones, assembled contigs, designed a 10K Ae. tauschii Infinium SNP array, constructed a 7,185-marker genetic map, and anchored on the map contigs totaling 4.03 Gb. Using whole genome shotgun reads, we extended the SNP marker sequences and found 17,093 genes and gene fragments. We showed that collinearity of the Ae. tauschii genes with Brachypodium distachyon, rice, and sorghum decreased with phylogenetic distance and that structural genome evolution rates have been high across all investigated lineages in subfamily Pooideae, including that of Brachypodieae. We obtained additional information about the evolution of the seven Triticeae chromosomes from 12 ancestral chromosomes and uncovered a pattern of centromere inactivation accompanying nested chromosome insertions in grasses. We showed that the density of noncollinear genes along the Ae. tauschii chromosomes positively correlates with recombination rates, suggested a cause, and showed that new genes, exemplified by disease resistance genes, are preferentially located in high-recombination chromosome regions. PMID:23610408

  5. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions.

    PubMed

    Nishijima, Ryo; Yoshida, Kentaro; Motoi, Yuka; Sato, Kazuhiro; Takumi, Shigeo

    2016-08-01

    The wild species in the Triticeae tribe are tremendous resources for crop breeding due to their abundant natural variation. However, their huge and highly repetitive genomes have hindered the establishment of physical maps and the completeness of their genome sequences. To develop molecular markers for the efficient utilization of their valuable traits while avoiding their genome complexity, we assembled RNA sequences of ten representative accessions of Aegilops tauschii, the progenitor of the wheat D genome, and estimated single nucleotide polymorphisms (SNPs) and insertions/deletions (indels). The deduced unigenes were anchored to the chromosomes of Ae. tauschii and barley. The SNPs and indels in the anchored unigenes, covering entire chromosomes, were sufficient for linkage map construction, even in combinations between the genetically closest accessions. Interestingly, the resolution of SNP and indel distribution on barley chromosomes was slightly higher than on Ae. tauschii chromosomes. Since barley chromosomes are regarded as virtual chromosomes of Triticeae species, our strategy allows capture of genetic markers arranged on the chromosomes in order based on the conserved synteny. The resolution of these genetic markers will be comparable to that of the Ae. tauschii whose draft genome sequence is available. Our procedure should be applicable to marker development for Triticeae species, which have no draft sequences available.

  6. Fine mapping of Hch1, the causal D-genome gene for hybrid chlorosis in interspecific crosses between tetraploid wheat and Aegilops tauschii.

    PubMed

    Hirao, Kana; Nishijima, Ryo; Sakaguchi, Kohei; Takumi, Shigeo

    2015-01-01

    Hybrid chlorosis, one of the reproductive barriers between tetraploid wheat and its D-genome progenitor, Aegilops tauschii, inhibits normal growth of synthetic wheat hexaploids. Hybrid chlorosis appears to be due to an epistatic interaction of two loci from the AB and D wheat genomes. Our previous study assigned the causal D-genome gene for hybrid chlorosis, Hch1, to the short arm of chromosome 7D. Here, we constructed a fine map of 7DS near Hch1 using 280 F2 individuals from a cross of two wheat synthetic lines, one showing normal growth and the other showing hybrid chlorosis. The hybrid chlorosis phenotype was controlled by a single dominant allele of the Hch1 locus in the synthetic hexaploids. Hch1 was closely linked to four new markers within 0.2 cM, and may be localized near or within the two Ae. tauschii scaffolds containing the linked markers on 7DS. Comparative analysis of the Hch1 chromosomal region for Ae. tauschii, barley and Brachypodium showed that a local inversion occurred in the region proximal to Hch1 during the divergence between barley and Ae. tauschii, and that the Hch1 region on wheat 7DS is syntenic to Brachypodium chromosome 1. These observations provide useful information for further studies toward map-based cloning of Hch1. PMID:26687862

  7. Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheat.

    PubMed

    Olson, Eric L; Rouse, Matthew N; Pumphrey, Michael O; Bowden, Robert L; Gill, Bikram S; Poland, Jesse A

    2013-05-01

    Wheat production is currently threatened by widely virulent races of the wheat stem rust fungus, Puccinia graminis f. sp. tritici, that are part of the TTKSK (also known as 'Ug99') race group. The diploid D genome donor species Aegilops tauschii (2n = 2x = 14, DD) is a readily accessible source of resistance to TTKSK and its derivatives that can be transferred to hexaploid wheat, Triticum aestivum (2n = 6x = 42, AABBDD). To expedite transfer of TTKSK resistance from Ae. tauschii, a direct hybridization approach was undertaken that integrates gene transfer, mapping, and introgression into one process. Direct crossing of Ae. tauschii accessions with an elite wheat breeding line combines the steps of gene transfer and introgression while development of mapping populations during gene transfer enables the identification of closely linked markers. Direct crosses were made using TTKSK-resistant Ae. tauschii accessions TA1662 and PI 603225 as males and a stem rust-susceptible T. aestivum breeding line, KS05HW14, as a female. Embryo rescue enabled recovery of F1 (ABDD) plants that were backcrossed as females to the hexaploid recurrent parent. Stem rust-resistant BC1F1 plants from each Ae. tauschii donor source were used as males to generate BC2F1 mapping populations. Bulked segregant analysis of BC2F1 genotypes was performed using 70 SSR loci distributed across the D genome. Using this approach, stem rust resistance genes from both accessions were located on chromosome arm 1DS and mapped using SSR and EST-STS markers. An allelism test indicated the stem rust resistance gene transferred from PI 603225 is Sr33. Race specificity suggests the stem rust resistance gene transferred from TA1662 is unique and this gene has been temporarily designated SrTA1662. Stem rust resistance genes derived from TA1662 and PI 603225 have been made available with selectable molecular markers in genetic backgrounds suitable for stem rust resistance breeding.

  8. Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii.

    PubMed

    Akpinar, Bala A; Budak, Hikmet

    2016-01-01

    As the post-transcriptional regulators of gene expression, microRNAs or miRNAs comprise an integral part of understanding how genomes function. Although miRNAs have been a major focus of recent efforts, miRNA research is still in its infancy in most plant species. Aegilops tauschii, the D genome progenitor of bread wheat, is a wild diploid grass exhibiting remarkable population diversity. Due to the direct ancestry and the diverse gene pool, A. tauschii is a promising source for bread wheat improvement. In this study, a total of 87 Aegilops miRNA families, including 51 previously unknown, were computationally identified both at the subgenomic level, using flow-sorted A. tauschii 5D chromosome, and at the whole genome level. Predictions at the genomic and subgenomic levels suggested A. tauschii 5D chromosome as rich in pre-miRNAs that are highly associated with Class II DNA transposons. In order to gain insights into miRNA evolution, putative 5D chromosome miRNAs were compared to its modern ortholog, Triticum aestivum 5D chromosome, revealing that 48 of the 58 A. tauschii 5D miRNAs were conserved in orthologous T. aestivum 5D chromosome. The expression profiles of selected miRNAs (miR167, miR5205, miR5175, miR5523) provided the first experimental evidence for miR5175, miR5205 and miR5523, and revealed differential expressional changes in response to drought in different genetic backgrounds for miR167 and miR5175. Interestingly, while miR5523 coding regions were present and expressed as pre-miR5523 in both T. aestivum and A. tauschii, the expression of mature miR5523 was observed only in A. tauschii under normal conditions, pointing out to an interference at the downstream processing of pre-miR5523 in T. aestivum. Overall, this study expands our knowledge on the miRNA catalog of A. tauschii, locating a subset specifically to the 5D chromosome, with ample functional and comparative insight which should contribute to and complement efforts to develop drought tolerant

  9. Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii.

    PubMed

    Akpinar, Bala A; Budak, Hikmet

    2016-01-01

    As the post-transcriptional regulators of gene expression, microRNAs or miRNAs comprise an integral part of understanding how genomes function. Although miRNAs have been a major focus of recent efforts, miRNA research is still in its infancy in most plant species. Aegilops tauschii, the D genome progenitor of bread wheat, is a wild diploid grass exhibiting remarkable population diversity. Due to the direct ancestry and the diverse gene pool, A. tauschii is a promising source for bread wheat improvement. In this study, a total of 87 Aegilops miRNA families, including 51 previously unknown, were computationally identified both at the subgenomic level, using flow-sorted A. tauschii 5D chromosome, and at the whole genome level. Predictions at the genomic and subgenomic levels suggested A. tauschii 5D chromosome as rich in pre-miRNAs that are highly associated with Class II DNA transposons. In order to gain insights into miRNA evolution, putative 5D chromosome miRNAs were compared to its modern ortholog, Triticum aestivum 5D chromosome, revealing that 48 of the 58 A. tauschii 5D miRNAs were conserved in orthologous T. aestivum 5D chromosome. The expression profiles of selected miRNAs (miR167, miR5205, miR5175, miR5523) provided the first experimental evidence for miR5175, miR5205 and miR5523, and revealed differential expressional changes in response to drought in different genetic backgrounds for miR167 and miR5175. Interestingly, while miR5523 coding regions were present and expressed as pre-miR5523 in both T. aestivum and A. tauschii, the expression of mature miR5523 was observed only in A. tauschii under normal conditions, pointing out to an interference at the downstream processing of pre-miR5523 in T. aestivum. Overall, this study expands our knowledge on the miRNA catalog of A. tauschii, locating a subset specifically to the 5D chromosome, with ample functional and comparative insight which should contribute to and complement efforts to develop drought tolerant

  10. Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii

    PubMed Central

    Akpinar, Bala A.; Budak, Hikmet

    2016-01-01

    As the post-transcriptional regulators of gene expression, microRNAs or miRNAs comprise an integral part of understanding how genomes function. Although miRNAs have been a major focus of recent efforts, miRNA research is still in its infancy in most plant species. Aegilops tauschii, the D genome progenitor of bread wheat, is a wild diploid grass exhibiting remarkable population diversity. Due to the direct ancestry and the diverse gene pool, A. tauschii is a promising source for bread wheat improvement. In this study, a total of 87 Aegilops miRNA families, including 51 previously unknown, were computationally identified both at the subgenomic level, using flow-sorted A. tauschii 5D chromosome, and at the whole genome level. Predictions at the genomic and subgenomic levels suggested A. tauschii 5D chromosome as rich in pre-miRNAs that are highly associated with Class II DNA transposons. In order to gain insights into miRNA evolution, putative 5D chromosome miRNAs were compared to its modern ortholog, Triticum aestivum 5D chromosome, revealing that 48 of the 58 A. tauschii 5D miRNAs were conserved in orthologous T. aestivum 5D chromosome. The expression profiles of selected miRNAs (miR167, miR5205, miR5175, miR5523) provided the first experimental evidence for miR5175, miR5205 and miR5523, and revealed differential expressional changes in response to drought in different genetic backgrounds for miR167 and miR5175. Interestingly, while miR5523 coding regions were present and expressed as pre-miR5523 in both T. aestivum and A. tauschii, the expression of mature miR5523 was observed only in A. tauschii under normal conditions, pointing out to an interference at the downstream processing of pre-miR5523 in T. aestivum. Overall, this study expands our knowledge on the miRNA catalog of A. tauschii, locating a subset specifically to the 5D chromosome, with ample functional and comparative insight which should contribute to and complement efforts to develop drought tolerant

  11. Genome-wide association study of drought-related resistance traits in Aegilops tauschii

    PubMed Central

    Qin, Peng; Lin, Yu; Hu, Yaodong; Liu, Kun; Mao, Shuangshuang; Li, Zhanyi; Wang, Jirui; Liu, Yaxi; Wei, Yuming; Zheng, Youliang

    2016-01-01

    Abstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection. PMID:27560650

  12. Genome-wide association study of drought-related resistance traits in Aegilops tauschii.

    PubMed

    Qin, Peng; Lin, Yu; Hu, Yaodong; Liu, Kun; Mao, Shuangshuang; Li, Zhanyi; Wang, Jirui; Liu, Yaxi; Wei, Yuming; Zheng, Youliang

    2016-01-01

    The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection. PMID:27560650

  13. Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The diploid progenitor of the wheat D genome, Aegilops tauschii, has provided a wealth of genes for resistance to many diseases and insect pests of wheat. Ae. tauschii is a readily accessible pool of genes for wheat breeding as genes can be transferred to elite wheat cultivars though direct hybridi...

  14. Applicability of Aegilops tauschii drought tolerance traits to breeding of hexaploid wheat.

    PubMed

    Sohail, Quahir; Inoue, Tomoe; Tanaka, Hiroyuki; Eltayeb, Amin Elsadig; Matsuoka, Yoshihiro; Tsujimoto, Hisashi

    2011-12-01

    Few genes are available to develop drought-tolerant bread wheat (Triticum aestivum L.) cultivars. One way to enhance bread wheat's genetic diversity would be to take advantage of the diversity of wild species by creating synthetic hexaploid wheat (SW) with the genomic constitution of bread wheat. In this study, we compared the expression of traits encoded at different ploidy levels and evaluated the applicability of Aegilops tauschii drought-related traits using 33 Ae. tauschii accessions along with their corresponding SW lines under well-watered and drought conditions. We found wide variation in Ae. tauschii, and even wider variation in the SW lines. Some SW lines were more drought-tolerant than the standard cultivar Cham 6. Aegilops tauschii from some regions gave better performing SW lines. The traits of Ae. tauschii were not significantly correlated with their corresponding SW lines, indicating that the traits expressed in wild diploid relatives of wheat may not predict the traits that will be expressed in SW lines derived from them. We suggest that, regardless of the adaptability and performance of the Ae. tauschii under drought, production of SW could probably result in genotypes with enhanced trait expression due to gene interactions, and that the traits of the synthetic should be evaluated in hexaploid level.

  15. [Phylogenetic relationships and intraspecific variation of D-genome Aegilops L. as revealed by RAPD analysis].

    PubMed

    Goriunova, S V; Kochieva, E Z; Chikida, N N; Pukhal'skiĭ, V A

    2004-05-01

    RAPD analysis was carried out to study the genetic variation and phylogenetic relationships of polyploid Aegilops species, which contain the D genome as a component of the alloploid genome, and diploid Aegilops tauschii, which is a putative donor of the D genome for common wheat. In total, 74 accessions of six D-genome Aegilops species were examined. The highest intraspecific variation (0.03-0.21) was observed for Ae. tauschii. Intraspecific distances between accessions ranged 0.007-0.067 in Ae. cylindrica, 0.017-0.047 in Ae. vavilovii, and 0.00-0.053 in Ae. juvenalis. Likewise, Ae. ventricosa and Ae. crassa showed low intraspecific polymorphism. The among-accession difference in alloploid Ae. ventricosa (genome DvNv) was similar to that of one parental species, Ae. uniaristata (N), and substantially lower than in the other parent, Ae. tauschii (D). The among-accession difference in Ae. cylindrica (CcDc) was considerably lower than in either parent, Ae. tauschii (D) or Ae. caudata (C). With the exception of Ae. cylindrica, all D-genome species--Ae. tauschii (D), Ae. ventricosa (DvNv), Ae. crassa (XcrDcrl and XcrDcrlDcr2), Ae. juvenalis (XjDjUj), and Ae. vavilovii (XvaDvaSva)--formed a single polymorphic cluster, which was distinct from clusters of other species. The only exception, Ae. cylindrica, did not group with the other D-genome species, but clustered with Ae. caudata (C), a donor of the C genome. The cluster of these two species was clearly distinct from the cluster of the other D-genome species and close to a cluster of Ae. umbellulata (genome U) and Ae. ovata (genome UgMg). Thus, RAPD analysis for the first time was used to estimate and to compare the interpopulation polymorphism and to establish the phylogenetic relationships of all diploid and alloploid D-genome Aegilops species.

  16. Characterization and expression analysis of WOX2 homeodomain transcription factor in Aegilops tauschii.

    PubMed

    Zhao, Shan; Jiang, Qian-Tao; Ma, Jian; Wang, Ji-Rui; Liu, Ya-Xi; Chen, Guo-Yue; Qi, Peng-Fei; Pu, Zhi-En; Lu, Zhen-Xiang; Zheng, You-Liang; Wei, Yu-Ming

    2015-03-01

    The WUSCHEL (WUS)-related homeobox (WOX) gene family coordinates transcription during the early phases of embryogenesis. In this study, a putative WOX2 homolog was isolated and characterized from Aegilops tauschii, the donor of D genome of Triticum aestivum. The sequence consisted of 2045 bp, and contained an open reading frame (ORF), encoded 322 amino acids. The predicted protein sequence contained a highly conserved homeodomain and the WUS-box domain, which is present in some members of the WOX protein family. The full-length ORF was subcloned into prokaryotic expression vector pET-30a, and an approximately 34-kDa protein was expressed in Escherichia coli BL21 (DE3) cells with IPTG induction. The molecular mass of the expressed protein was identical to that predicted by the cDNA sequence. Phylogenetic analysis suggested that Ae. tauschii WOX2 is closely related to the rice and maize orthologs. Quantitative PCR analysis showed that WOX2 from Ae. tauschii was primarily expressed in the seeds; transcription increased during seed development and declined after the embryos matured, suggesting that WOX2 is associated with embryo development in Ae. tauschii.

  17. Stem rust resistance in Aegilops tauschii germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aegilops tauschii Cosson, the D genome donor of hexaploid wheat, Triticum aestivum L., has been used extensively for the transfer of agronomically important traits to wheat, including stem rust resistance genes Sr33, Sr45, and Sr46. In order to identify potentially new stem rust resistance genes in ...

  18. Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum).

    PubMed

    Akpinar, Bala A; Lucas, Stuart J; Vrána, Jan; Doležel, Jaroslav; Budak, Hikmet

    2015-08-01

    Flow cytometric sorting of individual chromosomes and chromosome-based sequencing reduces the complexity of large, repetitive Triticeae genomes. We flow-sorted chromosome 5D of Aegilops tauschii, the D genome donor of bread wheat and sequenced it by Roche 454 GS FLX platform to approximately 2.2x coverage. Repetitive sequences represent 81.09% of the survey sequences of this chromosome, and Class I retroelements are the prominent type, with a particular abundance of LTR/Gypsy superfamily. Nonrepetitive sequences were assembled to cover 17.76% of the total chromosome regions. Up to 6188 nonrepetitive gene loci were predicted to be encoded by the 5D chromosome. The numbers and chromosomal distribution patterns of tRNA genes suggest abundance in tRNA(L) (ys) and tRNA(M) (et) species, while the nonrepetitive assembly reveals tRNA(A) (la) species as the most abundant type. A comparative analysis of the genomic sequences of bread wheat and Aegilops chromosome 5D indicates conservation of gene content. Orthologous unique genes, matching Aegilops 5D sequences, numbered 3730 in barley, 5063 in Brachypodium, 4872 in sorghum and 4209 in rice. In this study, we provide a chromosome-specific view into the structure and organization of the 5D chromosome of Ae. tauschii, the D genome ancestor of bread wheat. This study contributes to our understanding of the chromosome-level evolution of the wheat genome and presents a valuable resource in wheat genomics due to the recent hybridization of Ae. tauschii genome with its tetraploid ancestor.

  19. Draft Genome Sequence of Brevibacterium linens AE038-8, an Extremely Arsenic-Resistant Bacterium

    SciTech Connect

    Maizel, Daniela; Utturkar, Sagar M.; Brown, Steven D.; Ferrero, Marcela; Rosen, Barry

    2015-04-16

    To understand the arsenic biogeocycles in the groundwaters at Tucumán, Argentina, we isolated Brevibacterium linens sp. strain AE38-8, obtained from arsenic-contaminated well water. This strain is extremely resistant to arsenicals and has arsenic resistance (ars) genes in its genome. Here, we report the draft genome sequence of B. linens AE38-8.

  20. Molecular cloning, characterization and expression of WAG-2 alternative splicing transcripts in developing spikes of Aegilops tauschii.

    PubMed

    Wei, Shuhong

    2016-09-01

    WAG-2 is a C-class MADS-box gene, which is orthologous to AGAMOUS (AG) in Arabidopsis. The AG group C-class MADS-box genes are involved in stamen and pistil identity. In this study, two WAG-2 transcripts, namely, WAG-2f and WAG- 2g, were isolated and characterized from Aegilops tauschii. The open reading frames of WAG-2f and WAG-2g were 825 and 822 bp, respectively, encoding 275 and 274 amino acid residues. BLAST searches of partial WAG-2 genomic sequence against the draft sequence of Ae. tauschii genome database revealed the complex structure of WAG-2 gene, which consisted of seven exons and six introns. The WAG-2f and WAG-2g cDNAs were two alternative splicing transcripts. The alternative splicing events were produced by an alternative 5' splice site. The expression level of WAG-2f transcript, which was extremely weak in young spikes of floret primordium formation stage, increased as the spikes developed. The highest expression was observed in the spikes at the anther separation stage. Low expression levels of WAG-2f were also detected at the tetrad stage. The WAG- 2g transcript was expressed at all four stages of spike development but at a relatively low level. The expression pattern of the two transcripts was distinctly different during floral development, thereby suggesting a functional divergence. PMID:27659328

  1. [Development and study of spring bread wheat variety Pamyati Maystrenko with introgression of genetic material from synthetic hexaploid Triticum timopheevii zhuk. x Aegilops tauschii Coss].

    PubMed

    Laikova, L I; Belan, I A; Badaeva, E D; Posseeva, L P; Shepelev, S S; Shumny, V K; Pershina, L A

    2013-01-01

    Synthetic hexaploids are bridges for transferring new genes that determine resistance to stress factors from wild-type species to bread wheat. In the present work, the method of developing the spring bread wheat variety Pamyati Maystrenko and the results of its study are described. This variety was obtained using one of the immune lines produced earlier via the hybridization of the spring bread wheat variety Saratovskaya 29 with the synthetic hexaploid T. timopheevii Zhuk. x Ae. tauschii Coss. The C-staining of chromosomes in the Pamyati Maystrenko variety revealed substitutions of 2B and 6B chromosomes by the homeologous chromosomes of the G genome of T. timopheevii and the substitution of chromosome 1D by an orthologous chromosome ofAe. tauschii. It was found that this variety is characterized by resistance to leaf and stem rust, powdery mildew, and loose smut as well as by high grain and bread-making qualities. The role of the alien genetic material introgressed into the bread-wheat genome in the expression of adaptive and economically valuable traits in the Pamyati Maystrenko variety is discussed.

  2. Radiation hybrid maps of D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The large and complex genome of bread wheat (Triticum aestivum L., ~17 Gb) requires high-resolution genome maps saturated with ordered markers to assist in anchoring and orienting BAC contigs/ sequence scaffolds for whole genome sequence assembly. Radiation hybrid (RH) mapping has proven to be an e...

  3. Rapid genome mapping in nano channel array for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Next-generation sequencing (NGS) technologies have enabled high-throughput and low-cost generation of sequence data; however, de novo genome assembly remains a great challenge, particularly for large genomes. NGS short reads are often insufficient to create large contigs that span repeat sequences...

  4. Flow sorting of C-genome chromosomes from wild relatives of wheat Aegilops markgrafii, Ae. triuncialis and Ae. cylindrica, and their molecular organization

    PubMed Central

    Molnár, István; Vrána, Jan; Farkas, András; Kubaláková, Marie; Cseh, András; Molnár-Láng, Márta; Doležel, Jaroslav

    2015-01-01

    Background and Aims Aegilops markgrafii (CC) and its natural hybrids Ae. triuncialis (UtUtCtCt) and Ae. cylindrica (DcDcCcCc) represent a rich reservoir of useful genes for improvement of bread wheat (Triticum aestivum), but the limited information available on their genome structure and the shortage of molecular (cyto-) genetic tools hamper the utilization of the extant genetic diversity. This study provides the complete karyotypes in the three species obtained after fluorescent in situ hybridization (FISH) with repetitive DNA probes, and evaluates the potential of flow cytometric chromosome sorting. Methods The flow karyotypes obtained after the analysis of 4',6-diamidino-2-phenylindole (DAPI)-stained chromosomes were characterized and the chromosome content of the peaks on the flow karyotypes was determined by FISH. Twenty-nine conserved orthologous set (COS) markers covering all seven wheat homoeologous chromosome groups were used for PCR with DNA amplified from flow-sorted chromosomes and genomic DNA. Key Results FISH with repetitive DNA probes revealed that chromosomes 4C, 5C, 7Ct, T6UtS.6UtL-5CtL, 1Cc and 5Dc could be sorted with purities ranging from 66 to 91 %, while the remaining chromosomes could be sorted in groups of 2–5. This identified a partial wheat–C-genome homology for group 4 and 5 chromosomes. In addition, 1C chromosomes were homologous with group 1 of wheat; a small segment from group 2 indicated 1C–2C rearrangement. An extensively rearranged structure of chromosome 7C relative to wheat was also detected. Conclusions The possibility of purifying Aegilops chromosomes provides an attractive opportunity to investigate the structure and evolution of the Aegilops C genome and to develop molecular tools to facilitate the identification of alien chromatin and support alien introgression breeding in bread wheat. PMID:26043745

  5. Harnessing NGS and Big Data Optimally: Comparison of miRNA Prediction from Assembled versus Non-assembled Sequencing Data--The Case of the Grass Aegilops tauschii Complex Genome.

    PubMed

    Budak, Hikmet; Kantar, Melda

    2015-07-01

    MicroRNAs (miRNAs) are small, endogenous, non-coding RNA molecules that regulate gene expression at the post-transcriptional level. As high-throughput next generation sequencing (NGS) and Big Data rapidly accumulate for various species, efforts for in silico identification of miRNAs intensify. Surprisingly, the effect of the input genomics sequence on the robustness of miRNA prediction was not evaluated in detail to date. In the present study, we performed a homology-based miRNA and isomiRNA prediction of the 5D chromosome of bread wheat progenitor, Aegilops tauschii, using two distinct sequence data sets as input: (1) raw sequence reads obtained from 454-GS FLX Titanium sequencing platform and (2) an assembly constructed from these reads. We also compared this method with a number of available plant sequence datasets. We report here the identification of 62 and 22 miRNAs from raw reads and the assembly, respectively, of which 16 were predicted with high confidence from both datasets. While raw reads promoted sensitivity with the high number of miRNAs predicted, 55% (12 out of 22) of the assembly-based predictions were supported by previous observations, bringing specificity forward compared to the read-based predictions, of which only 37% were supported. Importantly, raw reads could identify several repeat-related miRNAs that could not be detected with the assembly. However, raw reads could not capture 6 miRNAs, for which the stem-loops could only be covered by the relatively longer sequences from the assembly. In summary, the comparison of miRNA datasets obtained by these two strategies revealed that utilization of raw reads, as well as assemblies for in silico prediction, have distinct advantages and disadvantages. Consideration of these important nuances can benefit future miRNA identification efforts in the current age of NGS and Big Data driven life sciences innovation. PMID:26061358

  6. Rapid evolutionary dynamics in a 2.8-Mb chromosomal region containing multiple prolamin and resistance gene families in Aegilops tauschii.

    PubMed

    Dong, Lingli; Huo, Naxin; Wang, Yi; Deal, Karin; Wang, Daowen; Hu, Tiezhu; Dvorak, Jan; Anderson, Olin D; Luo, Ming-Cheng; Gu, Yong Q

    2016-09-01

    Prolamin and resistance gene families are important in wheat food use and in defense against pathogen attacks, respectively. To better understand the evolution of these multi-gene families, the DNA sequence of a 2.8-Mb genomic region, representing an 8.8 cM genetic interval and harboring multiple prolamin and resistance-like gene families, was analyzed in the diploid grass Aegilops tauschii, the D-genome donor of bread wheat. Comparison with orthologous regions from rice, Brachypodium, and sorghum showed that the Ae. tauschii region has undergone dramatic changes; it has acquired more than 80 non-syntenic genes and only 13 ancestral genes are shared among these grass species. These non-syntenic genes, including prolamin and resistance-like genes, originated from various genomic regions and likely moved to their present locations via sequence evolution processes involving gene duplication and translocation. Local duplication of non-syntenic genes contributed significantly to the expansion of gene families. Our analysis indicates that the insertion of prolamin-related genes occurred prior to the separation of the Brachypodieae and Triticeae lineages. Unlike in Brachypodium, inserted prolamin genes have rapidly evolved and expanded to encode different classes of major seed storage proteins in Triticeae species. Phylogenetic analyses also showed that the multiple insertions of resistance-like genes and subsequent differential expansion of each R gene family. The high frequency of non-syntenic genes and rapid local gene evolution correlate with the high recombination rate in the 2.8-Mb region with nine-fold higher than the genome-wide average. Our results demonstrate complex evolutionary dynamics in this agronomically important region of Triticeae species.

  7. Near Full-Length Genomic Characterization of a Novel CRF 01_AE/C Recombinant from Western India.

    PubMed

    Karade, Santosh; Pandey, Sudhanshu; Gianchandani, Sheetal; Kurle, Swarali N; Ghate, Manisha; Gaikwad, Nitin S; Rewari, Bharat B; Gangakhedkar, Raman R

    2015-12-01

    HIV is known for its genetic variability across the globe. The HIV epidemic in India is primarily driven by subtype C, although sporadic circulating and unique recombinant forms are also reported from a few metropolitan cities in which genotyping facilities are available. Here we report a novel CRF01_AE/C recombinant from a multicenter study on the effectiveness of antiretroviral therapy (ART), 12 months after its initiation. Our subject is a 32-year-old heterosexual female, a native of Pune city in western India. Identification and analyses of recombination breakpoints using jpHMM@Gobics and SimPlot bootscanning revealed six recombination breakpoints, indicating insertion of the CRF01_AE genome at three points in the backbone of subtype C. Both subtype C and CRF01_AE are commonly seen in the population at risk of heterosexual HIV transmission, thereby providing an opportunity for cocirculation and recombination. The emergence of a novel recombinant of CRF01_AE/C is indicative of the increasing genetic diversity of the HIV epidemic in India.

  8. Near Full-Length Genome Identification of a Novel HIV-1 Recombinant Form (CRF01_AE/CRF07_BC) in Zhejiang, China.

    PubMed

    Peng, Xiaorong; Li-Jun, Xu; Xie, Tiansheng; Liu, Fumin; Wu, Nanping

    2016-09-01

    CRF01_AE and CRF07_BC are the two major circulating recombinant forms (CRFs) in China. Furthermore, many kinds of unique recombinant forms (URFs) between CRF01_AE and CRF07_BC were recently identified in China. Here we detected a novel recombinant of CRF07_BC/CRF01_AE, whose genome structure is distinctly different from other URFs reported before. The phylogenetic analysis of the near full-length sequence of 15zj032 reveals that three regions of CRF01_AE insert into the CRF07_BC backbone. Recently, the continued emergence of novel URFs implies that super infections of different subtypes of HIV-1 are common in China and should be given enough importance. PMID:27353182

  9. Genetic Basis for Spontaneous Hybrid Genome Doubling during Allopolyploid Speciation of Common Wheat Shown by Natural Variation Analyses of the Paternal Species

    PubMed Central

    Matsuoka, Yoshihiro; Nasuda, Shuhei; Ashida, Yasuyo; Nitta, Miyuki; Tsujimoto, Hisashi; Takumi, Shigeo; Kawahara, Taihachi

    2013-01-01

    The complex process of allopolyploid speciation includes various mechanisms ranging from species crosses and hybrid genome doubling to genome alterations and the establishment of new allopolyploids as persisting natural entities. Currently, little is known about the genetic mechanisms that underlie hybrid genome doubling, despite the fact that natural allopolyploid formation is highly dependent on this phenomenon. We examined the genetic basis for the spontaneous genome doubling of triploid F1 hybrids between the direct ancestors of allohexaploid common wheat (Triticum aestivum L., AABBDD genome), namely Triticumturgidum L. (AABB genome) and Aegilopstauschii Coss. (DD genome). An Ae. tauschii intraspecific lineage that is closely related to the D genome of common wheat was identified by population-based analysis. Two representative accessions, one that produces a high-genome-doubling-frequency hybrid when crossed with a T. turgidum cultivar and the other that produces a low-genome-doubling-frequency hybrid with the same cultivar, were chosen from that lineage for further analyses. A series of investigations including fertility analysis, immunostaining, and quantitative trait locus (QTL) analysis showed that (1) production of functional unreduced gametes through nonreductional meiosis is an early step key to successful hybrid genome doubling, (2) first division restitution is one of the cytological mechanisms that cause meiotic nonreduction during the production of functional male unreduced gametes, and (3) six QTLs in the Ae. tauschii genome, most of which likely regulate nonreductional meiosis and its subsequent gamete production processes, are involved in hybrid genome doubling. Interlineage comparisons of Ae. tauschii’s ability to cause hybrid genome doubling suggested an evolutionary model for the natural variation pattern of the trait in which non-deleterious mutations in six QTLs may have important roles. The findings of this study demonstrated that the

  10. Draft Genome Sequence of Aeromonas hydrophila Strain Ae34, Isolated from a Septicemic and Moribund Koi Carp (Cyprinus carpio koi), a Freshwater Aquarium Fish.

    PubMed

    Jagoda, S S S De S; Tan, Engkong; Arulkanthan, Appudurai; Kinoshita, Shigeharu; Watabe, Shugo; Asakawa, Shuichi

    2014-06-12

    Aeromonas hydrophila is an important opportunistic pathogen that infects a variety of aquatic and terrestrial animals, including humans. We report here the draft genome sequence of A. hydrophila Ae34, a multidrug-resistant isolate from the kidney of a moribund koi carp (Ciprinus carpio koi) with signs of hemorrhagic septicemia.

  11. Genomic characterization of two novel HIV-1 unique (CRF01_AE/B) recombinant forms among men who have sex with men in Beijing, China.

    PubMed

    Li, Zheng; Li, Jia; Feng, Yi; Kalish, Marcia L; Lu, Hongyan; Yin, Lu; Liao, Lingjie; Qian, Han-Zhu; Frost, Simon D W; Ruan, Yuhua; Vermund, Sten H; Shao, Yiming; Xing, Hui

    2015-09-01

    We report here two novel HIV-1 recombinant forms (CRF01_AE/B) isolated from two HIV-positive male subjects infected through homosexual contact in Beijing, China. Recombination contributes substantially to the genetic diversity of HIV-1, and is likely to occur in populations in which multiple subtypes circulate. Molecular epidemiological studies showed that subtype B, CRF01_AE, and CRF07_BC are currently cocirculating in parallel among men who have sex with men (MSM) in China, providing the opportunity for the emergence of new recombinants. Phylogenetic analysis of near full-length genome (NFLG) sequences showed that the unique recombinant forms (URFs) were composed of gene regions from CRF01_AE and subtype B. The CRF01_AE region of the recombinants clustered together with a previously described cluster 4 lineage of CRF01_AE. The B regions of both the recombinants clustered within the B strains. The two recombinants were quite similar with six breakpoints in common. These data highlight the importance of continuous surveillance of the dynamic change of HIV-1 subtypes and new recombinants among the MSM population.

  12. Genomic Characterization of Two Novel HIV-1 Unique (CRF01_AE/B) Recombinant Forms Among Men Who Have Sex with Men in Beijing, China

    PubMed Central

    Li, Zheng; Li, Jia; Feng, Yi; Kalish, Marcia L.; Lu, Hongyan; Yin, Lu; Liao, Lingjie; Qian, Han-Zhu; Frost, Simon D.W.; Ruan, Yuhua; Vermund, Sten H.; Shao, Yiming

    2015-01-01

    Abstract We report here two novel HIV-1 recombinant forms (CRF01_AE/B) isolated from two HIV-positive male subjects infected through homosexual contact in Beijing, China. Recombination contributes substantially to the genetic diversity of HIV-1, and is likely to occur in populations in which multiple subtypes circulate. Molecular epidemiological studies showed that subtype B, CRF01_AE, and CRF07_BC are currently cocirculating in parallel among men who have sex with men (MSM) in China, providing the opportunity for the emergence of new recombinants. Phylogenetic analysis of near full-length genome (NFLG) sequences showed that the unique recombinant forms (URFs) were composed of gene regions from CRF01_AE and subtype B. The CRF01_AE region of the recombinants clustered together with a previously described cluster 4 lineage of CRF01_AE. The B regions of both the recombinants clustered within the B strains. The two recombinants were quite similar with six breakpoints in common. These data highlight the importance of continuous surveillance of the dynamic change of HIV-1 subtypes and new recombinants among the MSM population. PMID:26058342

  13. AE 941.

    PubMed

    2004-01-01

    AE 941 [Arthrovas, Neoretna, Psovascar] is shark cartilage extract that inhibits angiogenesis. AE 941 acts by blocking the two main pathways that contribute to the process of angiogenesis, matrix metalloproteases and the vascular endothelial growth factor signalling pathway. When initial development of AE 941 was being conducted, AEterna assigned the various indications different trademarks. Neovastat was used for oncology, Psovascar was used for dermatology, Neoretna was used for ophthalmology and Arthrovas was used for rheumatology. However, it is unclear if these trademarks will be used in the future and AEterna appears to only be using the Neovastat trademark in its current publications regardless of the indication. AEterna Laboratories signed commercialisation agreements with Grupo Ferrer Internacional SA of Spain and Medac GmbH of Germany in February 2001. Under the terms of the agreement, AEterna has granted exclusive commercialisation and distribution rights to AE 941 in oncology to Grupo Ferrer Internacional for the Southern European countries of France, Belgium, Spain, Greece, Portugal and Italy. It also has rights in Central and South America. Medac GmbH will have marketing rights in Germany, the UK, Scandinavia, Switzerland, Austria, Ireland, the Netherlands and Eastern Europe. In October 2002, AEterna Laboratories announced that it had signed an agreement with Australian healthcare products and services company Mayne Group for marketing AE 941 (as Neovastat) in Australia, New Zealand, Canada and Mexico. In March 2003, AEterna Laboratories announced it has signed an agreement with Korean based LG Life Sciences Ltd for marketing AE 941 (as Neovastat) in South Korea. The agreement provides AEterna with upfront and milestone payments, as well as a return on manufacturing and sales of AE 941. AEterna Laboratories had granted Alcon Laboratories an exclusive worldwide licence for AE 941 for ophthalmic products. However, this licence has been terminated. In

  14. Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

    PubMed

    Muñoz-Amatriaín, María; Lonardi, Stefano; Luo, MingCheng; Madishetty, Kavitha; Svensson, Jan T; Moscou, Matthew J; Wanamaker, Steve; Jiang, Tao; Kleinhofs, Andris; Muehlbauer, Gary J; Wise, Roger P; Stein, Nils; Ma, Yaqin; Rodriguez, Edmundo; Kudrna, Dave; Bhat, Prasanna R; Chao, Shiaoman; Condamine, Pascal; Heinen, Shane; Resnik, Josh; Wing, Rod; Witt, Heather N; Alpert, Matthew; Beccuti, Marco; Bozdag, Serdar; Cordero, Francesca; Mirebrahim, Hamid; Ounit, Rachid; Wu, Yonghui; You, Frank; Zheng, Jie; Simková, Hana; Dolezel, Jaroslav; Grimwood, Jane; Schmutz, Jeremy; Duma, Denisa; Altschmied, Lothar; Blake, Tom; Bregitzer, Phil; Cooper, Laurel; Dilbirligi, Muharrem; Falk, Anders; Feiz, Leila; Graner, Andreas; Gustafson, Perry; Hayes, Patrick M; Lemaux, Peggy; Mammadov, Jafar; Close, Timothy J

    2015-10-01

    Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome (BACs) in the physical map were sequenced, fine structure was limited. To gain access to the gene-containing portion of the barley genome at high resolution, we identified and sequenced 15 622 BACs representing the minimal tiling path of 72 052 physical-mapped gene-bearing BACs. This generated ~1.7 Gb of genomic sequence containing an estimated 2/3 of all Morex barley genes. Exploration of these sequenced BACs revealed that although distal ends of chromosomes contain most of the gene-enriched BACs and are characterized by high recombination rates, there are also gene-dense regions with suppressed recombination. We made use of published map-anchored sequence data from Aegilops tauschii to develop a synteny viewer between barley and the ancestor of the wheat D-genome. Except for some notable inversions, there is a high level of collinearity between the two species. The software HarvEST:Barley provides facile access to BAC sequences and their annotations, along with the barley-Ae. tauschii synteny viewer. These BAC sequences constitute a resource to improve the efficiency of marker development, map-based cloning, and comparative genomics in barley and related crops. Additional knowledge about regions of the barley genome that are gene-dense but low recombination is particularly relevant. PMID:26252423

  15. Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

    PubMed

    Muñoz-Amatriaín, María; Lonardi, Stefano; Luo, MingCheng; Madishetty, Kavitha; Svensson, Jan T; Moscou, Matthew J; Wanamaker, Steve; Jiang, Tao; Kleinhofs, Andris; Muehlbauer, Gary J; Wise, Roger P; Stein, Nils; Ma, Yaqin; Rodriguez, Edmundo; Kudrna, Dave; Bhat, Prasanna R; Chao, Shiaoman; Condamine, Pascal; Heinen, Shane; Resnik, Josh; Wing, Rod; Witt, Heather N; Alpert, Matthew; Beccuti, Marco; Bozdag, Serdar; Cordero, Francesca; Mirebrahim, Hamid; Ounit, Rachid; Wu, Yonghui; You, Frank; Zheng, Jie; Simková, Hana; Dolezel, Jaroslav; Grimwood, Jane; Schmutz, Jeremy; Duma, Denisa; Altschmied, Lothar; Blake, Tom; Bregitzer, Phil; Cooper, Laurel; Dilbirligi, Muharrem; Falk, Anders; Feiz, Leila; Graner, Andreas; Gustafson, Perry; Hayes, Patrick M; Lemaux, Peggy; Mammadov, Jafar; Close, Timothy J

    2015-10-01

    Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome (BACs) in the physical map were sequenced, fine structure was limited. To gain access to the gene-containing portion of the barley genome at high resolution, we identified and sequenced 15 622 BACs representing the minimal tiling path of 72 052 physical-mapped gene-bearing BACs. This generated ~1.7 Gb of genomic sequence containing an estimated 2/3 of all Morex barley genes. Exploration of these sequenced BACs revealed that although distal ends of chromosomes contain most of the gene-enriched BACs and are characterized by high recombination rates, there are also gene-dense regions with suppressed recombination. We made use of published map-anchored sequence data from Aegilops tauschii to develop a synteny viewer between barley and the ancestor of the wheat D-genome. Except for some notable inversions, there is a high level of collinearity between the two species. The software HarvEST:Barley provides facile access to BAC sequences and their annotations, along with the barley-Ae. tauschii synteny viewer. These BAC sequences constitute a resource to improve the efficiency of marker development, map-based cloning, and comparative genomics in barley and related crops. Additional knowledge about regions of the barley genome that are gene-dense but low recombination is particularly relevant.

  16. Molecular evolution of Wcor15 gene enhanced our understanding of the origin of A, B and D genomes in Triticum aestivum.

    PubMed

    Liu, Fangfang; Si, Hongqi; Wang, Chengcheng; Sun, Genlou; Zhou, Erting; Chen, Can; Ma, Chuanxi

    2016-08-16

    The allohexaploid bread wheat originally derived from three closely related species with A, B and D genome. Although numerous studies were performed to elucidate its origin and phylogeny, no consensus conclusion has reached. In this study, we cloned and sequenced the genes Wcor15-2A, Wcor15-2B and Wcor15-2D in 23 diploid, 10 tetraploid and 106 hexaploid wheat varieties and analyzed their molecular evolution to reveal the origin of the A, B and D genome in Triticum aestivum. Comparative analyses of sequences in diploid, tetraploid and hexaploid wheats suggest that T. urartu, Ae. speltoides and Ae. tauschii subsp. strangulata are most likely the donors of the Wcor15-2A, Wcor15-2B and Wcor15-2D locus in common wheat, respectively. The Wcor15 genes from subgenomes A and D were very conservative without insertion and deletion of bases during evolution of diploid, tetraploid and hexaploid. Non-coding region of Wcor15-2B gene from B genome might mutate during the first polyploidization from Ae. speltoides to tetraploid wheat, however, no change has occurred for this gene during the second allopolyploidization from tetraploid to hexaploid. Comparison of the Wcor15 gene shed light on understanding of the origin of the A, B and D genome of common wheat.

  17. Molecular evolution of Wcor15 gene enhanced our understanding of the origin of A, B and D genomes in Triticum aestivum

    PubMed Central

    Liu, Fangfang; Si, Hongqi; Wang, Chengcheng; Sun, Genlou; Zhou, Erting; Chen, Can; Ma, Chuanxi

    2016-01-01

    The allohexaploid bread wheat originally derived from three closely related species with A, B and D genome. Although numerous studies were performed to elucidate its origin and phylogeny, no consensus conclusion has reached. In this study, we cloned and sequenced the genes Wcor15-2A, Wcor15-2B and Wcor15-2D in 23 diploid, 10 tetraploid and 106 hexaploid wheat varieties and analyzed their molecular evolution to reveal the origin of the A, B and D genome in Triticum aestivum. Comparative analyses of sequences in diploid, tetraploid and hexaploid wheats suggest that T. urartu, Ae. speltoides and Ae. tauschii subsp. strangulata are most likely the donors of the Wcor15-2A, Wcor15-2B and Wcor15-2D locus in common wheat, respectively. The Wcor15 genes from subgenomes A and D were very conservative without insertion and deletion of bases during evolution of diploid, tetraploid and hexaploid. Non-coding region of Wcor15-2B gene from B genome might mutate during the first polyploidization from Ae. speltoides to tetraploid wheat, however, no change has occurred for this gene during the second allopolyploidization from tetraploid to hexaploid. Comparison of the Wcor15 gene shed light on understanding of the origin of the A, B and D genome of common wheat. PMID:27526862

  18. Molecular evolution of Wcor15 gene enhanced our understanding of the origin of A, B and D genomes in Triticum aestivum.

    PubMed

    Liu, Fangfang; Si, Hongqi; Wang, Chengcheng; Sun, Genlou; Zhou, Erting; Chen, Can; Ma, Chuanxi

    2016-01-01

    The allohexaploid bread wheat originally derived from three closely related species with A, B and D genome. Although numerous studies were performed to elucidate its origin and phylogeny, no consensus conclusion has reached. In this study, we cloned and sequenced the genes Wcor15-2A, Wcor15-2B and Wcor15-2D in 23 diploid, 10 tetraploid and 106 hexaploid wheat varieties and analyzed their molecular evolution to reveal the origin of the A, B and D genome in Triticum aestivum. Comparative analyses of sequences in diploid, tetraploid and hexaploid wheats suggest that T. urartu, Ae. speltoides and Ae. tauschii subsp. strangulata are most likely the donors of the Wcor15-2A, Wcor15-2B and Wcor15-2D locus in common wheat, respectively. The Wcor15 genes from subgenomes A and D were very conservative without insertion and deletion of bases during evolution of diploid, tetraploid and hexaploid. Non-coding region of Wcor15-2B gene from B genome might mutate during the first polyploidization from Ae. speltoides to tetraploid wheat, however, no change has occurred for this gene during the second allopolyploidization from tetraploid to hexaploid. Comparison of the Wcor15 gene shed light on understanding of the origin of the A, B and D genome of common wheat. PMID:27526862

  19. Evaluation of Aegilops tauschii and Aegilops speltoides for acquired thermotolerance: Implications in wheat breeding programmes.

    PubMed

    Hairat, Suboot; Khurana, Paramjit

    2015-10-01

    Severe and frequent heat waves are predicted in the near future having dramatic and far-reaching ecological and social impact. The aim of this study was to examine acquired thermotolerance of two Aegilops species: Aegilops tauschii and Aegilops speltoides and study their potential adaptive mechanisms. The effect of two episodes of high heat stress (45 °C/12 h) with a day of recovery period was investigated on their physiology. As compared to A. speltoides, A. tauschii suffered less inhibition of photosystem II efficiency and net photosynthetic rate (Pn). Although A. tauschii showed nearly complete recovery of PSII, the adverse effect was more pronounced in A. speltoides. Measurement of the minimum fluorescence (Fo) versus temperature curves revealed a higher inflection temperature of Fo for A. tauschii than A. speltoides, reflecting greater thermo stability of the photosynthetic apparatus. Absorbed light energy distribution revealed that A. speltoides showed increased steady state fluorescence and a lower absorbed light allocated to photosynthetic chemistry (ɸPSII) relative to A. tauschii. However, A. tauschii showed higher ability to scavenge free radicals as compared to A. speltoides. This was further validated by higher expression of ascorbate peroxidase gene. These results suggest that A. tauschii showed faster recovery and a better thermostability of its photosynthetic apparatus under severe stress conditions along with a better regulation of energy channeling of PSII complexes to minimize oxidative damage and thus retains greater capability of carbon assimilation. These factors aid in imparting a greater heat tolerance to A. tauschii as compared to A. speltoides and thus make it a better candidate for alien species introgression in wheat breeding programs for thermotolerance in wheat.

  20. Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe.

    PubMed

    Middleton, Christopher P; Senerchia, Natacha; Stein, Nils; Akhunov, Eduard D; Keller, Beat; Wicker, Thomas; Kilian, Benjamin

    2014-01-01

    Using Roche/454 technology, we sequenced the chloroplast genomes of 12 Triticeae species, including bread wheat, barley and rye, as well as the diploid progenitors and relatives of bread wheat Triticum urartu, Aegilops speltoides and Ae. tauschii. Two wild tetraploid taxa, Ae. cylindrica and Ae. geniculata, were also included. Additionally, we incorporated wild Einkorn wheat Triticum boeoticum and its domesticated form T. monococcum and two Hordeum spontaneum (wild barley) genotypes. Chloroplast genomes were used for overall sequence comparison, phylogenetic analysis and dating of divergence times. We estimate that barley diverged from rye and wheat approximately 8-9 million years ago (MYA). The genome donors of hexaploid wheat diverged between 2.1-2.9 MYA, while rye diverged from Triticum aestivum approximately 3-4 MYA, more recently than previously estimated. Interestingly, the A genome taxa T. boeoticum and T. urartu were estimated to have diverged approximately 570,000 years ago. As these two have a reproductive barrier, the divergence time estimate also provides an upper limit for the time required for the formation of a species boundary between the two. Furthermore, we conclusively show that the chloroplast genome of hexaploid wheat was contributed by the B genome donor and that this unknown species diverged from Ae. speltoides about 980,000 years ago. Additionally, sequence alignments identified a translocation of a chloroplast segment to the nuclear genome which is specific to the rye/wheat lineage. We propose the presented phylogeny and divergence time estimates as a reference framework for future studies on Triticeae. PMID:24614886

  1. Accelerated Senescence and Enhanced Disease Resistance in Hybrid Chlorosis Lines Derived from Interspecific Crosses between Tetraploid Wheat and Aegilops tauschii

    PubMed Central

    Tosa, Yukio; Yoshida, Kentaro; Park, Pyoyun; Takumi, Shigeo

    2015-01-01

    Hybrid chlorosis, a type of hybrid incompatibility, has frequently been reported in inter- and intraspecific crosses of allopolyploid wheat. In a previous study, we reported some types of growth abnormalities such as hybrid necrosis and observed hybrid chlorosis with mild or severe abnormalities in wheat triploids obtained in crosses between tetraploid wheat cultivar Langdon and four Ae. tauschii accessions and in their derived synthetic hexaploids. However, the molecular mechanisms underlying hybrid chlorosis are not well understood. Here, we compared cytology and gene expression in leaves to characterize the abnormal growth in wheat synthetics showing mild and severe chlorosis. In addition, we compared disease resistance to wheat blast fungus. In total 55 and 105 genes related to carbohydrate metabolism and 53 and 89 genes for defense responses were markedly up-regulated in the mild and severe chlorosis lines, respectively. Abnormal chloroplasts formed in the mesophyll cells before the leaves yellowed in the hybrid chlorosis lines. The plants with mild chlorosis showed increased resistance to wheat blast and powdery mildew fungi, although significant differences only in two, third internode length and maturation time, out of the examined agricultural traits were found between the wild type and plants showing mild chlorosis. These observations suggest that senescence might be accelerated in hybrid chlorosis lines of wheat synthetics. Moreover, in wheat synthetics showing mild chlorosis, the negative effects on biomass can be minimized, and they may show substantial fitness under pathogen-polluted conditions. PMID:25806790

  2. Near full-length genome sequence of a novel HIV-1 recombinant form (CRF01_AE/B) detected among men who have sex with men in Jilin Province, China.

    PubMed

    Li, Xingguang; Feng, Yi; Yang, Yao; Chen, Yanli; Guo, Qi; Sun, Liuyan; Zang, Xihui; Xing, Hui; Shao, Yiming

    2014-07-01

    We report here a novel HIV-1 recombinant form (CRF01_AE/B) detected from a comprehensive HIV-1 molecular epidemiologic study among men who have sex with men (MSM) in Jilin province of northeastern China. The near full-length genome (NFLG) analyses showed that the novel HIV-1 recombinant isolate (JL.RF07) was composed of CRF01_AE cluster 5 (northeastern China origin) and subtype B (U.S. and European origin), with six recombinant breakpoints observed in the pol, vif, tat, rev, and env gene regions. To the best of our knowledge, this is the first detection of a novel HIV-1 recombinant form (CRF01_AE/B) in Jilin, which may indicate an active transmission network of HIV-1 infection among MSM in the region. Further studies of the molecular epidemiology of the HIV-1 epidemic among MSM in northeastern China are necessary to gain a fuller understanding of the transmission network and potential public health impact of HIV-1 among MSM in this region.

  3. AB-QTL analysis in winter wheat: I. Synthetic hexaploid wheat (T. turgidum ssp. dicoccoides x T. tauschii) as a source of favourable alleles for milling and baking quality traits.

    PubMed

    Kunert, Antje; Naz, Ali Ahmad; Dedeck, Oliver; Pillen, Klaus; Léon, Jens

    2007-09-01

    The advanced backcross QTL (AB-QTL) strategy was utilised to locate quantitative trait loci (QTLs) for baking quality traits in two BC(2)F(3) populations of winter wheat. The backcrosses are derived from two German winter wheat cultivars, Batis and Zentos, and two synthetic, hexaploid wheat accessions, Syn022 and Syn086. The synthetics originate from hybridisations of wild emmer (T. turgidum spp. dicoccoides) and T. tauschii, rather than from durum wheat and T. tauschii and thus allowed for the first time to test for exotic QTL effects on wheat genomes A and B in addition to genome D. The investigated quality traits comprised hectolitre weight, grain hardness, flour yield Type 550, falling number, grain protein content, sedimentation volume and baking volume. One hundred and forty-nine SSR markers were applied to genotype a total of 400 BC(2)F(3) lines. For QTL detection, a mixed-model ANOVA was conducted, including the effects DNA marker, BC(2)F(3) line, environment and marker x environment interaction. Overall 38 QTLs significant for a marker main effect were detected. The exotic allele improved trait performance at 14 QTLs (36.8%), while the elite genotype contributed the favourable effect at 24 QTLs (63.2%). The favourable exotic alleles were mainly associated with grain protein content, though the greatest improvement of trait performance due to the exotic alleles was achieved for the traits falling number and sedimentation volume. At the QTL on chromosome 4B the exotic allele increased the falling number by 19.6% and at the QTL on chromosome 6D the exotic allele led to an increase of the sedimentation volume by 21.7%. The results indicate that synthetic wheat derived from wild emmer x T. tauschii carries favourable QTL alleles for baking quality traits, which might be useful for breeding improved wheat varieties by marker-assisted selection.

  4. Genetic map of Triticum turgidum based on a hexaploid wheat population without genetic recombination for D genome

    PubMed Central

    2012-01-01

    Background A synthetic doubled-haploid hexaploid wheat population, SynDH1, derived from the spontaneous chromosome doubling of triploid F1 hybrid plants obtained from the cross of hybrids Triticum turgidum ssp. durum line Langdon (LDN) and ssp. turgidum line AS313, with Aegilops tauschii ssp. tauschii accession AS60, was previously constructed. SynDH1 is a tetraploidization-hexaploid doubled haploid (DH) population because it contains recombinant A and B chromosomes from two different T. turgidum genotypes, while all the D chromosomes from Ae. tauschii are homogenous across the whole population. This paper reports the construction of a genetic map using this population. Results Of the 606 markers used to assemble the genetic map, 588 (97%) were assigned to linkage groups. These included 513 Diversity Arrays Technology (DArT) markers, 72 simple sequence repeat (SSR), one insertion site-based polymorphism (ISBP), and two high-molecular-weight glutenin subunit (HMW-GS) markers. These markers were assigned to the 14 chromosomes, covering 2048.79 cM, with a mean distance of 3.48 cM between adjacent markers. This map showed good coverage of the A and B genome chromosomes, apart from 3A, 5A, 6A, and 4B. Compared with previously reported maps, most shared markers showed highly consistent orders. This map was successfully used to identify five quantitative trait loci (QTL), including two for spikelet number on chromosomes 7A and 5B, two for spike length on 7A and 3B, and one for 1000-grain weight on 4B. However, differences in crossability QTL between the two T. turgidum parents may explain the segregation distortion regions on chromosomes 1A, 3B, and 6B. Conclusions A genetic map of T. turgidum including 588 markers was constructed using a synthetic doubled haploid (SynDH) hexaploid wheat population. Five QTLs for three agronomic traits were identified from this population. However, more markers are needed to increase the density and resolution of this map in the

  5. Lights, camera, A&E.

    PubMed

    Gould, Mark

    Channel 4 series 24 Hours in A&E was one of the television highlights of 2011. Filmed at King's College Hospital in London, it showed the reality of life in an A&E department and may have improved the public's understanding of nursing. PMID:22324233

  6. MlNCD1: A novel Aegilops tauschii derived powdery mildew resistance gene identified in common wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Powdery mildew is a major fungal disease in wheat, especially in cool maritime climates. A novel Aegilops tauschii derived wheat powdery mildew resistance gene present in the germplasm line NC96BGTD1 was genetically characterized as a monogenic trait in field trials using F2 and F4-derived lines fr...

  7. Optical Nano-mapping and Analysis of Plant Genomes.

    PubMed

    Luo, Ming-Cheng; Deal, Karin R; Murray, Armond; Zhu, Tingting; Hastie, Alex R; Stedman, Will; Sadowski, Henry; Saghbini, Michael

    2016-01-01

    Application of optical mapping based on BioNano Genomics Irys(®) technology ( http://www.bionanogenomics.com/ ) is growing rapidly since its debut in November 2012. The technology can be used to facilitate genome sequence assembly and analysis of genome structural variations. We describe here the detailed protocol that we used to generate a whole genome BioNano map for Aegilops tauschii, the D genome progenitor of hexaploid wheat (Triticum aestivum). We are using the whole genome BioNano map to validate sequence assembly based on the next-generation sequencing, order sequence scaffolds, and ultimately build pseudomolecules for the genome. PMID:27511170

  8. (abstract) Airborne Emission Spectrometer (AES)

    NASA Technical Reports Server (NTRS)

    Beer, Reinhard

    1994-01-01

    AES is a low-cost analog of the TES downlooking modes. Because AES operates at ambient temperature, limb-viewing is not possible. The first flight of AES took place in April 1994 on the NASA P3B aircraft out of Wallops Island, VA. While planned as an engineering test flight, spectra were successfully acquired both over the Atlantic Ocean and the area of the Great Dismal Swamp on the Virginia-North Carolina border. At this writing (July 1994), a second series of flights on the NASA DC8 aircraft out of Ames RC,CA is in progress. By the time of the workshop, a third series using the NASA C130 should have been accomplished.

  9. Acoustic emission characterization using AE (parameter) delay

    NASA Technical Reports Server (NTRS)

    Williams, J. H., Jr.; Lee, S. S.

    1983-01-01

    The acoustic emission (AE) parameter delay concept is defined as that particular measured value of a parameter at which a specified baseline level of cumulative AE activity is reached. The parameter can be from any of a broad range of elastic, plastic, viscoelastic, and fracture mechanics parameters, as well as their combinations. Such parameters include stress, load, strain, displacement, time, temperature, loading cycle, unloading stress, stress intensity factor, strain energy release rate, and crack tip plasticity zone size, while the AE activity may be AE event counts, ringdown counts, energy, event duration, etc., as well as their combinations. Attention is given to examples for the AE parameter delay concept, together with various correlations.

  10. Infrared observations of AE Aquarii

    NASA Technical Reports Server (NTRS)

    Tanzi, E. G.; Chincarini, G.; Tarenghi, M.

    1981-01-01

    Broadband infrared observations of the cataclysmic variable AE Aquarii are reported. The observations were obtained in the J, H, K and L filters with the InSb photometer attached to the 1-m telescope of the European Southern Observatory. The infrared energy distribution observed from 0.35 to 3.5 microns for phase 0.5 suggests a spectral type of K5 V for the secondary and a distance to the system of approximately 70 pc if an absolute magnitude of 7.3 is assumed. Monitoring of the flux at 2.2 microns reveals a variability with an amplitude of approximately 0.3 magnitude over one third of the orbital period, the nature of which is under investigation.

  11. Wheat - Aegilops introgressions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aegilops is the most closely related genus to Triticum in the tribe Triticeae. Aegilops speltoides Tausch (B genome donor) and Ae. tauschii Coss. (D genome donor) contributed two of the three genomes present in common wheat (Triticum aestivum L., 2n = 6x = 42, AABBDD genomes). The Aegilops genus c...

  12. The AE-8 trapped electron model environment

    NASA Technical Reports Server (NTRS)

    Vette, James I.

    1991-01-01

    The machine sensible version of the AE-8 electron model environment was completed in December 1983. It has been sent to users on the model environment distribution list and is made available to new users by the National Space Science Data Center (NSSDC). AE-8 is the last in a series of terrestrial trapped radiation models that includes eight proton and eight electron versions. With the exception of AE-8, all these models were documented in formal reports as well as being available in a machine sensible form. The purpose of this report is to complete the documentation, finally, for AE-8 so that users can understand its construction and see the comparison of the model with the new data used, as well as with the AE-4 model.

  13. Waveform Analysis of AE in Composites

    NASA Technical Reports Server (NTRS)

    Prosser, William H.

    1998-01-01

    Advanced, waveform based acoustic emission (AE) techniques have been developed to evaluate damage mechanisms in the testing of composite materials. This approach, more recently referred to as Modal AE, provides an enhanced capability to discriminate and eliminate noise signals from those generated by damage mechanisms. Much more precise source location can also be obtained in comparison to conventional, threshold crossing arrival time determination techniques. Two successful examples of the application of Modal AE are presented in this work. In the first, the initiation of transverse matrix cracking in cross-ply, tensile coupons was monitored. In these tests, it was documented that the same source mechanism, matrix cracking, can produce widely different AE signal amplitudes dependent on laminate stacking sequence and thickness. These results, taken together with well known propagation effects of attenuation and dispersion of AE signals in composite laminates, cast further doubt on the validity of simple amplitude or amplitude distribution analysis for AE source determination. For the second example, delamination propagation in composite ring specimens was monitored. Pressurization of these composite rings is used to simulate the stresses in a composite rocket motor case. AE signals from delamination propagation were characterized by large amplitude flexural plate mode components which have long signal durations because of the large dispersion of this mode.

  14. AES analysis of barium fluoride thin films

    NASA Astrophysics Data System (ADS)

    Kashin, G. N.; Makhnjuk, V. I.; Rumjantseva, S. M.; Shchekochihin, Ju. M.

    1993-06-01

    AES analysis of thin films of metal fluorides is a difficult problem due to charging and decomposition of such films under electron bombardment. We have developed a simple algorithm for a reliable quantitative AES analysis of metal fluoride thin films (BaF 2 in our work). The relative AES sensitivity factors for barium and fluorine were determined from BaF 2 single-crystal samples. We have investigated the dependence of composition and stability of barium fluoride films on the substrate temperature during film growth. We found that the instability of BaF 2 films grown on GaAs substrates at high temperatures (> 525°C) is due to a loss of fluorine. Our results show that, under the optimal electron exposure conditions, AES can be used for a quantitative analysis of metal fluoride thin films.

  15. Advanced AE Techniques in Composite Materials Research

    NASA Technical Reports Server (NTRS)

    Prosser, William H.

    1996-01-01

    Advanced, waveform based acoustic emission (AE) techniques have been successfully used to evaluate damage mechanisms in laboratory testing of composite coupons. An example is presented in which the initiation of transverse matrix cracking was monitored. In these tests, broad band, high fidelity acoustic sensors were used to detect signals which were then digitized and stored for analysis. Analysis techniques were based on plate mode wave propagation characteristics. This approach, more recently referred to as Modal AE, provides an enhanced capability to discriminate and eliminate noise signals from those generated by damage mechanisms. This technique also allows much more precise source location than conventional, threshold crossing arrival time determination techniques. To apply Modal AE concepts to the interpretation of AE on larger composite specimens or structures, the effects of modal wave propagation over larger distances and through structural complexities must be well characterized and understood. To demonstrate these effects, measurements of the far field, peak amplitude attenuation of the extensional and flexural plate mode components of broad band simulated AE signals in large composite panels are discussed. These measurements demonstrated that the flexural mode attenuation is dominated by dispersion effects. Thus, it is significantly affected by the thickness of the composite plate. Furthermore, the flexural mode attenuation can be significantly larger than that of the extensional mode even though its peak amplitude consists of much lower frequency components.

  16. Clinical epidemiology of human AE in Europe.

    PubMed

    Vuitton, D A; Demonmerot, F; Knapp, J; Richou, C; Grenouillet, F; Chauchet, A; Vuitton, L; Bresson-Hadni, S; Millon, L

    2015-10-30

    This review gives a critical update of the situation regarding alveolar echinococcosis (AE) in Europe in humans, based on existing publications and on findings of national and European surveillance systems. All sources point to an increase in human cases of AE in the "historic endemic areas" of Europe, namely Germany, Switzerland, Austria and France and to the emergence of human cases in countries where the disease had never been recognised until the end of the 20th century, especially in central-eastern and Baltic countries. Both increase and emergence could be only due to methodological biases; this point is discussed in the review. One explanation may be given by changes in the animal reservoir of the parasite, Echinococcus multilocularis (increase in the global population of foxes in Europe and its urbanisation, as well as a possible increased involvement of pet animals as definitive infectious hosts). The review also focuses onto 2 more original approaches: (1) how changes in therapeutic attitudes toward malignant and chronic inflammatory diseases may affect the epidemiology of AE in the future in Europe, since a recent survey of such cases in France showed the emergence of AE in patients with immune suppression since the beginning of the 21st century; (2) how setting a network of referral centres in Europe based on common studies on the care management of patients might contribute to a better knowledge of AE epidemiology in the future. PMID:26346900

  17. The accretion column of AE Aqr

    NASA Astrophysics Data System (ADS)

    Rodrigues, Claudia; Costa, D. Joaquim; Luna, Gerardo; Lima, Isabel J.; Silva, Karleyne M. G.; De Araujo, Jose Carlos N.; Coelho, Jaziel

    2016-07-01

    AE Aqr is a magnetic cataclysmic variable, whose white dwarf rotates at the very fast rate of 33 s modulating the flux from high-energies to optical wavelengths. There are many studies of the origin of its emission, which consider emission from a rotating magnetic field or from an accretion column. Recently, MAGIC observations have discarded AE Aqr emission in very high energy gamma-rays discarding non-thermal emission. Furthermore, soft and hard X-ray data from Swift and NuSTAR were fitted using thermal models. Here we present the modelling of AE Aqr X-ray spectra and light curve considering the emission of a magnetic accretion column using the Cyclops code. The model takes into consideration the 3D geometry of the system, allowing to properly represent the white-dwarf auto eclipse, the pre-shock column absorption, and the varying density and temperature of a tall accretion column.

  18. Differential attack on mini-AES

    NASA Astrophysics Data System (ADS)

    Ajeng Gemellia, Asadini Dwi; Indarjani, Santi

    2012-05-01

    This paper presents the results of differential attack on Mini-AES algorithm. The differential trails are constructed using all combinations of propagation ratio without repetition. To give practical results, we implement the key extraction for differential characteristics which have the highest and lowest probability as a comparison. Based on total propagation ratio and complexity resulted, Mini-AES algorithms are vulnerable to differential attack. The best differential characteristic is the differential characteristic using a single active s-box with the propagation ratio of 8 / 16.

  19. [RAPD analysis of the intraspecific and interspecific variation and phylogenetic relationships of Aegilops L. species with the U genome].

    PubMed

    Goriunova, S V; Chikida, N N; Kochieva, E Z

    2010-07-01

    RAPD analysis was used to study the genetic variation and phylogenetic relationships of polyploid Aegilops species with the U genome. In total, 115 DNA samples of eight polyploid species containing the U genome and the diploid species Ae. umbellulata (U) were examined. Substantial interspecific polymorphism was observed for the majority of the polyploid species with the U genome (interspecific differences, 0.01-0,2; proportion of polymorphic loci, 56.6-88.2%). Aegilops triuncialis was identified as the only alloploid species with low interspecific polymorphism (interspecific differences, 0-0.01, P = 50%) in the U-genome group. The U-genome Aegilops species proved to be separated from other species of the genus. The phylogenetic relationships were established for the U-genome species. The greatest separation within the U-genome group was observed for the US-genome species Ae. kotschyi and Ae. variabilis. The tetraploid species Ae. triaristata and Ae. columnaris, which had the UX genome, and the hexaploid species Ae. recta (UXN) were found to be related to each other and separate from the UM-genome species. A similarity was observed between the U M-genome species Ae. ovata and Ae. biuncialis, which had the UM genome, and the ancestral diploid U-genome species Ae. umbellulata. The UC-genome species Ae. triuncialis was rather separate and slightly similar to the UX-genome species.

  20. Matt Rogers on AES Energy Storage

    ScienceCinema

    Rogers, Matt

    2016-07-12

    The Department of Energy and AES Energy Storage recently agreed to a $17.1M conditional loan guarantee commitment. This project will develop the first battery-based energy storage system to provide a more stable and efficient electrical grid for New York State's high-voltage transmission network. Matt Rogers is the Senior Advisor to the Secretary for Recovery Act Implementation.

  1. Cytosolic H+ microdomain developed around AE1 during AE1-mediated Cl-/HCO3- exchange.

    PubMed

    Johnson, Danielle E; Casey, Joseph R

    2011-04-01

    Microdomains, regions of discontinuous cytosolic solute concentration enhanced by rapid solute transport and slow diffusion rates, have many cellular roles. pH-regulatory membrane transporters, like the Cl−/HCO3− exchanger AE1, could develop H+ microdomains since AE1 has a rapid transport rate and cytosolic H+ diffusion is slow. We examined whether the pH environment surrounding AE1 differs from other cellular locations. As AE1 drives Cl−/HCO3− exchange, differences in pH, near and remote from AE1, were monitored by confocal microscopy using two pH-sensitive fluorescent proteins: deGFP4 (GFP) and mNectarine (mNect). Plasma membrane (PM) pH (defined as ∼1 μm region around the cell periphery) was monitored by GFP fused to AE1 (GFP.AE1), and mNect fused to an inactive mutant of the Na+-coupled nucleoside co-transporter, hCNT3 (mNect.hCNT3). GFP.AE1 to mNect.hCNT3 distance was varied by co-expression of different amounts of the two proteins in HEK293 cells. As the GFP.AE1–mNect.hCNT3 distance increased, mNect.hCNT3 detected the Cl−/HCO3− exchange-associated cytosolic pH change with a time delay and reduced rate of pH change compared to GFP.AE1. We found that a H+ microdomain 0.3 μm in diameter forms around GFP.AE1 during physiological HCO3− transport. Carbonic anhydrase isoform II inhibition prevented H+ microdomain formation. We also measured the rate of H+ movement from PM GFP.AE1 to endoplasmic reticulum (ER), using mNect fused to the cytosolic face of ER-resident calnexin (CNX.mNect). The rate of H+ diffusion through cytosol was 60-fold faster than along the cytosolic surface of the plasma membrane. The pH environment surrounding pH regulatory transport proteins may differ as a result of H+ microdomain formation, which will affect nearby pH-sensitive processes.

  2. AES Water Architecture Study Interim Results

    NASA Technical Reports Server (NTRS)

    Sarguisingh, Miriam J.

    2012-01-01

    The mission of the Advanced Exploration System (AES) Water Recovery Project (WRP) is to develop advanced water recovery systems in order to enable NASA human exploration missions beyond low earth orbit (LEO). The primary objective of the AES WRP is to develop water recovery technologies critical to near term missions beyond LEO. The secondary objective is to continue to advance mid-readiness level technologies to support future NASA missions. An effort is being undertaken to establish the architecture for the AES Water Recovery System (WRS) that meets both near and long term objectives. The resultant architecture will be used to guide future technical planning, establish a baseline development roadmap for technology infusion, and establish baseline assumptions for integrated ground and on-orbit environmental control and life support systems (ECLSS) definition. This study is being performed in three phases. Phase I of this study established the scope of the study through definition of the mission requirements and constraints, as well as indentifying all possible WRS configurations that meet the mission requirements. Phase II of this study focused on the near term space exploration objectives by establishing an ISS-derived reference schematic for long-duration (>180 day) in-space habitation. Phase III will focus on the long term space exploration objectives, trading the viable WRS configurations identified in Phase I to identify the ideal exploration WRS. The results of Phases I and II are discussed in this paper.

  3. 22 CFR 120.30 - The Automated Export System (AES).

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 22 Foreign Relations 1 2013-04-01 2013-04-01 false The Automated Export System (AES). 120.30... DEFINITIONS § 120.30 The Automated Export System (AES). The Automated Export System (AES) is the Department of... data and defense services shall be reported directly to the Directorate of Defense Trade Controls...

  4. 22 CFR 120.30 - The Automated Export System (AES).

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 1 2014-04-01 2014-04-01 false The Automated Export System (AES). 120.30... DEFINITIONS § 120.30 The Automated Export System (AES). The Automated Export System (AES) is the Department of... data and defense services shall be reported directly to the Directorate of Defense Trade Controls...

  5. 22 CFR 120.30 - The Automated Export System (AES).

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 1 2012-04-01 2012-04-01 false The Automated Export System (AES). 120.30... DEFINITIONS § 120.30 The Automated Export System (AES). The Automated Export System (AES) is the Department of... data and defense services shall be reported directly to the Directorate of Defense Trade Controls...

  6. Secretome of transmissible Pseudomonas aeruginosa AES-1R grown in a cystic fibrosis lung-like environment.

    PubMed

    Scott, Nichollas E; Hare, Nathan J; White, Melanie Y; Manos, Jim; Cordwell, Stuart J

    2013-12-01

    Pseudomonas aeruginosa is the predominant cause of mortality in patients with cystic fibrosis (CF). We examined the secretome of an acute, transmissible CF P. aeruginosa (Australian epidemic strain 1-R; AES-1R) compared with laboratory-adapted PAO1. Culture supernatant proteins from rich (LB) and minimal (M9) media were compared using 2-DE and 2DLC-MS/MS, which revealed elevated abundance of PasP protease and absence of AprA protease in AES-1R. CF lung-like artificial sputum medium (ASMDM) contains serum and mucin that generally preclude proteomics of secreted proteins. ASMDM culture supernatants were subjected to 2DLC-MS/MS, which allowed the identification of 57 P. aeruginosa proteins, and qualitative spectral counting was used to estimate relative abundance. AES-1R-specific AES_7139 and PasP were more abundant in AES-1R ASMDM culture supernatants, while AprA could only be identified in PAO1. Relative quantitation was performed using selected reaction monitoring. Significantly elevated levels of PasP, LasB, chitin-binding protein (CbpD), and PA4495 were identified in AES-1R ASMDM supernatants. Quantitative PCR showed elevated pasP in AES-1R during early (18 h) ASMDM growth, while no evidence of aprA expression could be observed. Genomic screening of CF isolates revealed aes_7139 was present in all AES-1 and one pair of sequential nonepidemic isolates. Secreted proteins may be crucial in aiding CF-associated P. aeruginosa to establish infection and for adaptation to the CF lung. PMID:23991618

  7. Aegilops-Secale amphiploids: chromosome categorisation, pollen viability and identification of fungal disease resistance genes.

    PubMed

    Kwiatek, M; Błaszczyk, L; Wiśniewska, H; Apolinarska, B

    2012-02-01

    The aim of this study was to assess the potential breeding value of goatgrass-rye amphiploids, which we are using as a "bridge" in a transfer of Aegilops chromatin (containing, e.g. leaf rust resistance genes) into triticale. We analysed the chromosomal constitution (by genomic in situ hybridisation, GISH), fertility (by pollen viability tests) and the presence of leaf rust and eyespot resistance genes (by molecular and endopeptidase assays) in a collection of 6× and 4× amphiploids originating from crosses between five Aegilops species and Secale cereale. In the five hexaploid amphiploids Aegilops kotschyi × Secale cereale (genome UUSSRR), Ae. variabilis × S. cereale (UUSSRR), Ae. biuncialis × S. cereale (UUMMRR; two lines) and Ae. ovata × S. cereale (UUMMRR), 28 Aegilops chromosomes were recognised, while in the Ae. tauschii × S. cereale amphiploid (4×; DDRR), only 14 such chromosomes were identified. In the materials, the number of rye chromosomes varied from 14 to 16. In one line of Ae. ovata × S. cereale, the U-R translocation was found. Pollen viability varied from 24.4 to 75.4%. The leaf rust resistance genes Lr22, Lr39 and Lr41 were identified in Ae. tauschii and the 4× amphiploid Ae. tauschii × S. cereale. For the first time, the leaf rust resistance gene Lr37 was found in Ae. kotschyi, Ae. ovata, Ae. biuncialis and amphiploids derived from those parental species. No eyespot resistance gene Pch1 was found in the amphiploids.

  8. Paeoveitols A-E from Paeonia veitchii.

    PubMed

    Liang, Wen-Juan; Ma, Yun-Bao; Geng, Chang-An; Huang, Xiao-Yan; Xu, Hong-Bo; Zhang, Xue-Mei; Chen, Ji-Jun

    2015-10-01

    Paeoveitols A-E (1-5), involving three monoterpenes and two benzofuran constituents, were isolated from Paeonia veitchii. Their structures were determined based on extensive spectral analyses (IR, UV, MS, 1D and 2D NMR), and the absolute configuration of compound 1 was confirmed by single-crystal X-ray diffraction. By the agitating human melatonin receptor 1 (MT1) assay on HEK293 cell line in vitro, compound 4 showed weak activity with the agitation rate of 22.52% at the concentration of 1.79 mM.

  9. Chaotic appearance of the AE index

    NASA Technical Reports Server (NTRS)

    Shan, L.-H.; Hansen, P.; Goertz, C. K.; Smith, R. A.

    1991-01-01

    Results are reported from a stochastic analysis of a 5-day time series of the geomagnetic AE index during an active period. The original data, the power spectrum, and the autocorrelation function are shown, and the steps in the analysis are described in detail. It is found that the autocorrelation time scale is about 50 min, giving a correlation dimension (for the construction of a time series of m-dimensional vectors) of 2.4. This result is consistent with either colored-noise or deterministic-chaos magnetosphere models, indicating the need for further investigation.

  10. BOREAS AES READAC Surface Meteorological Data

    NASA Technical Reports Server (NTRS)

    Atkinson, G. Barrie; Funk, Barry; Hall, Forrest G. (Editor); Knapp, David E. (Editor)

    2000-01-01

    Canadian AES personnel collected and processed data related to surface atmospheric meteorological conditions over the BOREAS region. This data set contains 15-minute meteorological data from one READAC meteorology station in Hudson Bay, Saskatchewan. Parameters include day, time, type of report, sky condition, visibility, mean sea level pressure, temperature, dewpoint, wind, altimeter, opacity, minimum and maximum visibility, station pressure, minimum and maximum air temperature, a wind group, precipitation, and precipitation in the last hour. The data were collected non-continuously from 24-May-1994 to 20-Sep-1994. The data are provided in tabular ASCII files, and are classified as AFM-Staff data.

  11. BOREAS AES MARSII Surface Meteorological Data

    NASA Technical Reports Server (NTRS)

    Atkinson, G. Barrie; Funk, Barry; Hall, Forrest G. (Editor); Knapp, David E. (Editor)

    2000-01-01

    Canadian AES personnel collected several data sets related to surface and atmospheric meteorological conditions over the BOREAS region. This data set contains 15-minute meteorological data from six MARSII meteorology stations in the BOREAS region in Canada. Parameters include site, time, temperature, dewpoint, visibility, wind speed, wind gust, wind direction, two cloud groups, precipitation, and station pressure. Temporally, the data cover the period of May to September 1994. Geo-graphically, the stations are spread across the provinces of Saskatchewan and Manitoba. The data are provided in tabular ASCII files, and are classified as AFM-Staff data.

  12. AE measurements for evaluation of defects in FRP pressure vessels

    SciTech Connect

    Kawahara, Masanori; Takatsu, Takashi

    1995-11-01

    AE (acoustic emission) measurement was conducted in a series of pressuring tests of FRP pressure vessels in order to examine its applicability to the safety evaluation of vessels. Tested vessels were commercial FRP pressure vessels fabricated by filament winding of high strength glass fibers, impregnated epoxy resin, on a Al alloy liner. At the final stage of fabrication, they were subjected to autofrettage, an overpressuring treatment to produce compressive residual stresses in metal liner. AE measurement results showed a strong Kaiser`s effect and high felicity ratios. In a virgin vessel, very few AE signals were detected below the autofrettage pressure. Vessels containing artificial defects showed distinct increase in AE signals at the level of test pressure. AE origin map were obtained by triangular-zone calculation. Discussions are directed, in particular, to the selection of threshold and to the applicability of AE measurement to the in-service inspection of FRP pressure vessel.

  13. Energy efficiency analysis and implementation of AES on an FPGA

    NASA Astrophysics Data System (ADS)

    Kenney, David

    The Advanced Encryption Standard (AES) was developed by Joan Daemen and Vincent Rjimen and endorsed by the National Institute of Standards and Technology in 2001. It was designed to replace the aging Data Encryption Standard (DES) and be useful for a wide range of applications with varying throughput, area, power dissipation and energy consumption requirements. Field Programmable Gate Arrays (FPGAs) are flexible and reconfigurable integrated circuits that are useful for many different applications including the implementation of AES. Though they are highly flexible, FPGAs are often less efficient than Application Specific Integrated Circuits (ASICs); they tend to operate slower, take up more space and dissipate more power. There have been many FPGA AES implementations that focus on obtaining high throughput or low area usage, but very little research done in the area of low power or energy efficient FPGA based AES; in fact, it is rare for estimates on power dissipation to be made at all. This thesis presents a methodology to evaluate the energy efficiency of FPGA based AES designs and proposes a novel FPGA AES implementation which is highly flexible and energy efficient. The proposed methodology is implemented as part of a novel scripting tool, the AES Energy Analyzer, which is able to fully characterize the power dissipation and energy efficiency of FPGA based AES designs. Additionally, this thesis introduces a new FPGA power reduction technique called Opportunistic Combinational Operand Gating (OCOG) which is used in the proposed energy efficient implementation. The AES Energy Analyzer was able to estimate the power dissipation and energy efficiency of the proposed AES design during its most commonly performed operations. It was found that the proposed implementation consumes less energy per operation than any previous FPGA based AES implementations that included power estimations. Finally, the use of Opportunistic Combinational Operand Gating on an AES cipher

  14. BOREAS AES Campbell Scientific Surface Meteorological Data

    NASA Technical Reports Server (NTRS)

    Atkinson, G. Barrie; Funk, Barrie; Knapp. David E. (Editor); Hall, Forrest G. (Editor)

    2000-01-01

    Canadian AES personnel collected data related to surface and atmospheric meteorological conditions over the BOREAS region. This data set contains 15-minute meteorological data from 14 automated meteorology stations located across the BOREAS region. Included in this data are parameters of date, time, mean sea level pressure, station pressure, temperature, dew point, wind speed, resultant wind speed, resultant wind direction, peak wind, precipitation, maximum temperature in the last hour, minimum temperature in the last hour, pressure tendency, liquid precipitation in the last hour, relative humidity, precipitation from a weighing gauge, and snow depth. Temporally, the data cover the period of August 1993 to December 1996. The data are provided in tabular ASCII files, and are classified as AFM-Staff data.

  15. Multiple Lookup Table-Based AES Encryption Algorithm Implementation

    NASA Astrophysics Data System (ADS)

    Gong, Jin; Liu, Wenyi; Zhang, Huixin

    Anew AES (Advanced Encryption Standard) encryption algorithm implementation was proposed in this paper. It is based on five lookup tables, which are generated from S-box(the substitution table in AES). The obvious advantages are reducing the code-size, improving the implementation efficiency, and helping new learners to understand the AES encryption algorithm and GF(28) multiplication which are necessary to correctly implement AES[1]. This method can be applied on processors with word length 32 or above, FPGA and others. And correspondingly we can implement it by VHDL, Verilog, VB and other languages.

  16. PDS 144: The First Confirmed Herbig Ae-Herbig Ae Wide Binary

    NASA Technical Reports Server (NTRS)

    Hornbeck, J. B.; Grady, C. A.; Perrin, M. D.; Wisniewski, J. P.; Tofflemire, B. M.; Brown, A.; Holtzman, J. A.; Arraki, K.; Hamaguchi, K.; Woodgate, B.; Petre, R.; Daly, B.; Grogin, N. A.; Bonfield, D. G.; Williger, G. M.; Lauroesch, J. T.

    2012-01-01

    PDS 144 is a pair of Herbig Ae stars that are separated by 5.35" on the sky. It has previously been shown to have an A2Ve Herbig Ae star viewed at 83 deg inclination as its northern member and an A5Ve Herbig Ae star as its southern member. Direct imagery revealed a disk occulting PDS 144 N - the first edge-on disk observed around a Herbig Ae star. The lack of an obvious disk in direct imagery suggested PDS 144 S might be viewed face-on or not physically associated with PDS 144 N. Multi-epoch HST imagery of PDS 144 with a 5 yr baseline demonstrates PDS 144 N & S are comoving and have a common proper motion with TYC 6782-878-1. TYC 6782-878-1 has previously been identified as a member of Upper Sco sub-association A at d = 145 +/- 2 pc with an age of 5 - 10 Myr. Ground-based imagery reveals jets and a string of HH knots extending 13' (possibly further) which are aligned to within 7 deg +/- 6 deg on the sky. By combining proper motion data and the absence of a dark mid-plane with radial velocity data, we measure the inclination of PDS 144 S to be i = 73 deg +/- 7 deg. The radial velocity of the jets from PDS 144 N & S indicates they, and therefore their disks, are misaligned by 25 deg +/- 9 deg.. This degree of misalignment is similar to that seen in T-Tauri wide binaries.

  17. PDS 144: THE FIRST CONFIRMED Herbig Ae-Herbig Ae WIDE BINARY

    SciTech Connect

    Hornbeck, J. B.; Williger, G. M.; Lauroesch, J. T.; Grady, C. A.; Perrin, M. D.; Grogin, N. A.; Wisniewski, J. P.; Tofflemire, B. M.; Brown, A.; Holtzman, J. A.; Arraki, K.; Hamaguchi, K.; Woodgate, B.; Petre, R.; Bonfield, D. G.; Daly, B.

    2012-01-01

    PDS 144 is a pair of Herbig Ae stars that are separated by 5.''35 on the sky. It has previously been shown to have an A2Ve Herbig Ae star viewed at 83 Degree-Sign inclination as its northern member and an A5Ve Herbig Ae star as its southern member. Direct imagery revealed a disk occulting PDS 144 N-the first edge-on disk observed around a Herbig Ae star. The lack of an obvious disk in direct imagery suggested PDS 144 S might be viewed face-on or not physically associated with PDS 144 N. Multi-epoch Hubble Space Telescope imagery of PDS 144 with a 5 year baseline demonstrates PDS 144 N and S are comoving and have a common proper motion with TYC 6782-878-1. TYC 6782-878-1 has previously been identified as a member of Upper Sco sub-association A at d = 145 {+-} 2 pc with an age of 5-10 Myr. Ground-based imagery reveals jets and a string of Herbig-Haro knots extending 13' (possibly further) which are aligned to within 7 Degree-Sign {+-} 6 Degree-Sign on the sky. By combining proper motion data and the absence of a dark mid-plane with radial velocity data, we measure the inclination of PDS 144 S to be i = 73 Degree-Sign {+-} 7 Degree-Sign . The radial velocity of the jets from PDS 144 N and S indicates they, and therefore their disks, are misaligned by 25 Degree-Sign {+-} 9 Degree-Sign . This degree of misalignment is similar to that seen in T Tauri wide binaries.

  18. Molecular survey of Tamyb10-1 genes and their association with grain colour and germinability in Chinese wheat and Aegilops tauschii.

    PubMed

    Dong, Zhong Dong; Chen, Jie; Li, Ting; Chen, Feng; Cui, Dang Qun

    2015-09-01

    To investigate allelic variation of Myb10-1 genes in Chinese wheat and to examine its association with germination level in wheat, a total of 582 Chinese bread wheat cultivars and 110 Aegilops tauschii accessions were used to identify allelic variations of three Myb10-1 genes. Identification results indicated that there is a novel Tamyb10-B1 allele, designated Tamyb10-B1c, in the five Chinese landraces. The Tamyb10-B1c possibly has a large deletion including Tamyb10-B1 gene. There are three novel Tamyb10-D1 alleles (Aetmyb10-D1c, Aetmyb10-D1d and Aetmyb10-D1e) that were discovered in Aegilops tauschii. Of them, Aetmyb10-D1c allele possessed a 104-bp deletion and this resulted in a frame shift in the open reading frame of the Aetmyb10-D1 gene. AETMYB10-D1d and AETMYB10-D1e proteins possessed three and two different amino acids when compared with TAMYB10-D1b protein, respectively. Association of Tamyb10-1 allelic variation with grain germination level indicated that all five allelic combinations with red grains showed a significantly higher GP (germination percentage) and GI (germination index) values than those of white-grained Tamyb10-A1a/Tamyb10-B1a/Tamyb10-D1a genotype after storing it for one year. Moreover, the Tamyb10-A1b/Tamyb10-B1c/Tamyb10-D1b genotype possesses the significantly highest GP and GI among the six different Tamyb10-1 combinations. This study could provide useful information for wheat breeding programme in terms of grain colour and germination level.

  19. Molecular survey of Tamyb10-1 genes and their association with grain colour and germinability in Chinese wheat and Aegilops tauschii.

    PubMed

    Dong, Zhong Dong; Chen, Jie; Li, Ting; Chen, Feng; Cui, Dang Qun

    2015-09-01

    To investigate allelic variation of Myb10-1 genes in Chinese wheat and to examine its association with germination level in wheat, a total of 582 Chinese bread wheat cultivars and 110 Aegilops tauschii accessions were used to identify allelic variations of three Myb10-1 genes. Identification results indicated that there is a novel Tamyb10-B1 allele, designated Tamyb10-B1c, in the five Chinese landraces. The Tamyb10-B1c possibly has a large deletion including Tamyb10-B1 gene. There are three novel Tamyb10-D1 alleles (Aetmyb10-D1c, Aetmyb10-D1d and Aetmyb10-D1e) that were discovered in Aegilops tauschii. Of them, Aetmyb10-D1c allele possessed a 104-bp deletion and this resulted in a frame shift in the open reading frame of the Aetmyb10-D1 gene. AETMYB10-D1d and AETMYB10-D1e proteins possessed three and two different amino acids when compared with TAMYB10-D1b protein, respectively. Association of Tamyb10-1 allelic variation with grain germination level indicated that all five allelic combinations with red grains showed a significantly higher GP (germination percentage) and GI (germination index) values than those of white-grained Tamyb10-A1a/Tamyb10-B1a/Tamyb10-D1a genotype after storing it for one year. Moreover, the Tamyb10-A1b/Tamyb10-B1c/Tamyb10-D1b genotype possesses the significantly highest GP and GI among the six different Tamyb10-1 combinations. This study could provide useful information for wheat breeding programme in terms of grain colour and germination level. PMID:26440084

  20. A Grammar Sketch of the Kaki Ae Language.

    ERIC Educational Resources Information Center

    Clifton, John M.

    Kaki Ae is a non-Austronesian language spoken by about 300 people on the south coast of Papua New Guinea, at best distantly related to any other language in that area. A brief grammar sketch of the language is presented, including discussion of the phonology, sentences, phrases, words, and morpheme categories. Kaki Ae phonemics include 11…

  1. 15 CFR Appendix B to Part 30 - AES Filing Codes

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 15 Commerce and Foreign Trade 1 2013-01-01 2013-01-01 false AES Filing Codes B Appendix B to Part 30 Commerce and Foreign Trade Regulations Relating to Commerce and Foreign Trade BUREAU OF THE CENSUS, DEPARTMENT OF COMMERCE FOREIGN TRADE REGULATIONS Pt. 30, App. B Appendix B to Part 30—AES Filing Codes Part...

  2. 15 CFR Appendix B to Part 30 - AES Filing Codes

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 15 Commerce and Foreign Trade 1 2012-01-01 2012-01-01 false AES Filing Codes B Appendix B to Part 30 Commerce and Foreign Trade Regulations Relating to Commerce and Foreign Trade BUREAU OF THE CENSUS, DEPARTMENT OF COMMERCE FOREIGN TRADE REGULATIONS Pt. 30, App. B Appendix B to Part 30—AES Filing Codes Part...

  3. 15 CFR Appendix B to Part 30 - AES Filing Codes

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 15 Commerce and Foreign Trade 1 2014-01-01 2014-01-01 false AES Filing Codes B Appendix B to Part 30 Commerce and Foreign Trade Regulations Relating to Commerce and Foreign Trade BUREAU OF THE CENSUS, DEPARTMENT OF COMMERCE FOREIGN TRADE REGULATIONS Pt. 30, App. B Appendix B to Part 30—AES Filing Codes Part...

  4. 15 CFR 758.2 - Automated Export System (AES).

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 15 Commerce and Foreign Trade 2 2012-01-01 2012-01-01 false Automated Export System (AES). 758.2... CLEARANCE REQUIREMENTS § 758.2 Automated Export System (AES). The Census Bureau's Foreign Trade Statistics Regulations (FTSR) (15 CFR Part 30) contain provisions for filing Shipper's Export Declarations...

  5. 15 CFR 758.2 - Automated Export System (AES).

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 15 Commerce and Foreign Trade 2 2011-01-01 2011-01-01 false Automated Export System (AES). 758.2... CLEARANCE REQUIREMENTS § 758.2 Automated Export System (AES). The Census Bureau's Foreign Trade Statistics Regulations (FTSR) (15 CFR part 30) contain provisions for filing Shipper's Export Declarations...

  6. 15 CFR 758.2 - Automated Export System (AES).

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 15 Commerce and Foreign Trade 2 2013-01-01 2013-01-01 false Automated Export System (AES). 758.2... CLEARANCE REQUIREMENTS § 758.2 Automated Export System (AES). The Census Bureau's Foreign Trade Statistics Regulations (FTSR) (15 CFR Part 30) contain provisions for filing Shipper's Export Declarations...

  7. The global compendium of Aedes aegypti and Ae. albopictus occurrence.

    PubMed

    Kraemer, Moritz U G; Sinka, Marianne E; Duda, Kirsten A; Mylne, Adrian; Shearer, Freya M; Brady, Oliver J; Messina, Jane P; Barker, Christopher M; Moore, Chester G; Carvalho, Roberta G; Coelho, Giovanini E; Van Bortel, Wim; Hendrickx, Guy; Schaffner, Francis; Wint, G R William; Elyazar, Iqbal R F; Teng, Hwa-Jen; Hay, Simon I

    2015-01-01

    Aedes aegypti and Ae. albopictus are the main vectors transmitting dengue and chikungunya viruses. Despite being pathogens of global public health importance, knowledge of their vectors' global distribution remains patchy and sparse. A global geographic database of known occurrences of Ae. aegypti and Ae. albopictus between 1960 and 2014 was compiled. Herein we present the database, which comprises occurrence data linked to point or polygon locations, derived from peer-reviewed literature and unpublished studies including national entomological surveys and expert networks. We describe all data collection processes, as well as geo-positioning methods, database management and quality-control procedures. This is the first comprehensive global database of Ae. aegypti and Ae. albopictus occurrence, consisting of 19,930 and 22,137 geo-positioned occurrence records respectively. Both datasets can be used for a variety of mapping and spatial analyses of the vectors and, by inference, the diseases they transmit.

  8. Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis.

    PubMed

    Arrigo, Nils; Guadagnuolo, Roberto; Lappe, Sylvain; Pasche, Sophie; Parisod, Christian; Felber, François

    2011-09-01

    Gene flow between domesticated species and their wild relatives is receiving growing attention. This study addressed introgression between wheat and natural populations of its wild relatives (Aegilops species). The sampling included 472 individuals, collected from 32 Mediterranean populations of three widespread Aegilops species (Aegilops geniculata, Ae. neglecta and Ae. triuncialis) and compared wheat field borders to areas isolated from agriculture. Individuals were characterized with amplified fragment length polymorphism fingerprinting, analysed through two computational approaches (i.e. Bayesian estimations of admixture and fuzzy clustering), and sequences marking wheat-specific insertions of transposable elements. With this combined approach, we detected substantial gene flow between wheat and Aegilops species. Specifically, Ae. neglecta and Ae. triuncialis showed significantly more admixed individuals close to wheat fields than in locations isolated from agriculture. In contrast, little evidence of gene flow was found in Ae. geniculata. Our results indicated that reproductive barriers have been regularly bypassed during the long history of sympatry between wheat and Aegilops.

  9. Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis

    PubMed Central

    Arrigo, Nils; Guadagnuolo, Roberto; Lappe, Sylvain; Pasche, Sophie; Parisod, Christian; Felber, François

    2011-01-01

    Gene flow between domesticated species and their wild relatives is receiving growing attention. This study addressed introgression between wheat and natural populations of its wild relatives (Aegilops species). The sampling included 472 individuals, collected from 32 Mediterranean populations of three widespread Aegilops species (Aegilops geniculata, Ae. neglecta and Ae. triuncialis) and compared wheat field borders to areas isolated from agriculture. Individuals were characterized with amplified fragment length polymorphism fingerprinting, analysed through two computational approaches (i.e. Bayesian estimations of admixture and fuzzy clustering), and sequences marking wheat-specific insertions of transposable elements. With this combined approach, we detected substantial gene flow between wheat and Aegilops species. Specifically, Ae. neglecta and Ae. triuncialis showed significantly more admixed individuals close to wheat fields than in locations isolated from agriculture. In contrast, little evidence of gene flow was found in Ae. geniculata. Our results indicated that reproductive barriers have been regularly bypassed during the long history of sympatry between wheat and Aegilops. PMID:25568015

  10. Cause of the exceptionally high AE average for 2003

    NASA Astrophysics Data System (ADS)

    Prestes, A.

    2012-04-01

    In this work we focus on the year of 2003 when the AE index was extremely high (AE=341nT, with peak intensity more than 2200nT), this value is almost 100 nT higher when compared with others years of the cycle 23. Interplanetary magnetic field (IMF) and plasma data are compared with geomagnetic AE and Dst indices to determine the causes of exceptionally high AE average value. Analyzing the solar wind parameters we found that the annual average speed value was extremely high, approximately 542 km/s (peak value ~1074 km/s). These values were due to recurrent high-speed solar streams from large coronal holes, which stretch to the solar equator, and low-latitude coronal holes, which exist for many solar rotations. AE was found to increase with increasing solar wind speed and decrease when solar wind speed decrease. The cause of the high AE activity during 2003 is the presence of the high-speed corotating streams that contain large-amplitude Alfvén waves throughout the streams, which resulted in a large number of HILDCAAs events. When plasma and field of solar wind impinge on Earth's magnetosphere, the southward field turnings associated with the wave fluctuations cause magnetic reconnection and consequential high levels of AE activity and very long recovery phases on Dst, sometimes lasting until the next stream arrives.

  11. Characterization of Aes nuclear foci in colorectal cancer cells.

    PubMed

    Itatani, Yoshiro; Sonoshita, Masahiro; Kakizaki, Fumihiko; Okawa, Katsuya; Stifani, Stefano; Itoh, Hideaki; Sakai, Yoshiharu; Taketo, M Mark

    2016-01-01

    Amino-terminal enhancer of split (Aes) is a member of Groucho/Transducin-like enhancer (TLE) family. Aes is a recently found metastasis suppressor of colorectal cancer (CRC) that inhibits Notch signalling, and forms nuclear foci together with TLE1. Although some Notch-associated proteins are known to form subnuclear bodies, little is known regarding the dynamics or functions of these structures. Here, we show that Aes nuclear foci in CRC observed under an electron microscope are in a rather amorphous structure, lacking surrounding membrane. Investigation of their behaviour during the cell cycle by time-lapse cinematography showed that Aes nuclear foci dissolve during mitosis and reassemble after completion of cytokinesis. We have also found that heat shock cognate 70 (HSC70) is an essential component of Aes foci. Pharmacological inhibition of the HSC70 ATPase activity with VER155008 reduces Aes focus formation. These results provide insight into the understanding of Aes-mediated inhibition of Notch signalling. PMID:26229111

  12. 22 CFR 120.30 - The Automated Export System (AES).

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... Commerce, Bureau of Census, electronic filing of export information. The AES shall serve as the primary... data and defense services shall be reported directly to the Directorate of Defense Trade Controls...

  13. Time Series Analysis and Prediction of AE and Dst Data

    NASA Astrophysics Data System (ADS)

    Takalo, J.; Lohikiski, R.; Timonen, J.; Lehtokangas, M.; Kaski, K.

    1996-12-01

    A new method to analyse the structure function has been constructed and used in the analysis of the AE time series for the years 1978-85 and Dst time series for 1957-84. The structure function (SF) was defined by S(l) = <|x(ti + lDt) - x(ti)|>, where Dt is the sampling time, l is an integer, and <|.|> denotes the average of absolute values. If a time series is self-affine its SF should scale for small values of l as S(l) is proportional to lH, where 0 < H < 1 is called the scaling exponent. It is known that for power-law (coloured) noise, which has P ~ f-a, a ~ 2H + 1 for 1 < a < 3. In this work the scaling exponent H was analysed by considering the local slopes dlog(S(l))/dlog(l) between two adjacent points as a function of l. For self-affine time series the local slopes should stay constant, at least for small values of l. The AE time series was found to be affine such that the scaling exponent changes at a time scale of 113 (+/-9) minutes. On the other hand, in the SF function analysis, the Dst data were dominated by the 24-hour and 27-day periods. The 27-day period was further modulated by the annual variation. These differences between the two time series arise from the difference in their periodicities in relation to their respective characteristic time scales. In the AE data the dominating periods are longer than that related to the characteristic time scale, i.e. they appear in the flatter part of the power spectrum. This is why the affinity is the dominating feature of the AE time series. In contrast with this the dominating periods of the Dst data are shorter than the characteristic time scale, and appear in the steeper part of the spectrum. Consequently periodicity is the dominating feature of the Dst data. Because of their different dynamic characteristics, prediction of Dst and AE time series appear to presuppose rather different approaches. In principle it is easier to produce the gross features of the Dst time series correctly as it is periodicity

  14. 22 CFR 120.30 - The Automated Export System (AES).

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... Commerce, Bureau of Census, electronic filing of export information. The AES shall serve as the primary...). Also, requests for special reporting may be made by DDTC on a case-by-case basis, (e.g.,...

  15. Effect of slurry mineralogy on slurry ICP-AES.

    PubMed

    Walker, C J; Davey, D E; Turner, K E; Hamilton, I C

    1996-07-01

    Direct slurry analysis by FI ICP-AES has been tested on seven iron-containing and five zinc-containing minerals. Results indicate that the method can be applied for traces and majors in a range of different materials.

  16. Preflight and Inflight Calibration of TES and AES

    NASA Technical Reports Server (NTRS)

    Rider, David M.

    1997-01-01

    The Thermal Emission Spectrometer (TES), an EOS CHEM platform instrument, and its companion instrument, the Airborne Emission Spectrometer (AES), are both Fourier transform spectrometers designed for remote sensing of the troposphere.

  17. Some performance tests of a microarea AES. [Auger Electron Spectroscopy

    NASA Technical Reports Server (NTRS)

    Todd, G.; Poppa, H.

    1978-01-01

    An Auger electron spectroscopy (AES) system which has a submicron analysis capability is described. The system provides secondary electron imaging, as well as micro- and macro-area AES. The resolution of the secondary electron image of an oxidized Al contact pad on a charge-coupled device chip indicates a primary beam size of about 1000 A. For Auger mapping, a useful resolution of about 4000 A is reported

  18. Oligomeric structure of bAE3 protein.

    PubMed

    Pushkin, A V; Tsuprun, V L; Abuladze, N K; Newman, D; Kurtz, I

    2000-12-01

    The "brain" form of the anion exchanger protein 3 (bAE3) has been purified to homogeneity from the rabbit kidney by differential centrifugation and immunoaffinity chromatography. A single protein band of approximately 165 kDa was detected by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and Western blotting. Monomers, dimers (a major component), and a higher oligomeric form (apparently tetramers) were found after oxidative cross-linking of purified bAE3. The largest form of bAE3 was separated from dimers and monomers by sucrose gradient centrifugation and was studied by transmission electron microscopy to confirm a tetrameric structure. Two main types of bAE3 images were detected, round (approximately 11-14 nm) and square-shaped (approximately 12 x 12 nm). Image analysis revealed fourfold rotational symmetry of both the round and square-shaped images, indicating that bAE3 consists of multiples of 4 subunits. We conclude that bAE3 in Triton X-100 solution is predominantly a mixture of dimers and tetramers with a smaller amount of monomers.

  19. Role of NBCe1 and AE2 in Secretory Ameloblasts

    PubMed Central

    Paine, Michael L.; Snead, Malcolm L.; Wang, HongJun; Abuladze, Natalia; Pushkin, Alexander; Liu, Weixin; Kao, Li Yo; Wall, Susan M.; Kim, Young-Hee; Kurtz, Ira

    2008-01-01

    The H+/base transport processes that control the pH of the microenvironment adjacent to ameloblasts are not currently well understood. Mice null for the AE2 anion exchanger have abnormal enamel. In addition, patients with mutations in the electrogenic sodium bicarbonate cotransporter NBCe1 and mice lacking NBCe1 have enamel abnormalities. These observations suggest that AE2 and NBCe1 play important roles in amelogenesis. The present study aimed to understand the roles of AE2 and NBC1 in ameloblasts. The data showed that NBCe1 is expressed at the basolateral membrane of secretory ameloblasts, whereas AE2 is expressed at the apical membrane. Transcripts for AE2a and NBCe1-B were detected in RNA isolated from cultured ameloblast-like LS8 cells. Our data are the first evidence that AE2 and NBCe1 are expressed in ameloblasts in vivo in a polarized fashion thereby providing a mechanism for ameloblast transcellular bicarbonate secretion in the process of enamel formation and maturation. PMID:18362326

  20. A Recombinant AeDNA Containing the Insect-Specific Toxin, BmK IT1, Displayed an Increasing Pathogenicity on Aedes albopictus

    PubMed Central

    Gu, Jin-Bao; Dong, Yun-Qiao; Peng, Hong-Juan; Chen, Xiao-Guang

    2010-01-01

    The Aedes aegypti densovirus (AeDNV) has previously shown potential in mosquito control. To improve its efficacy as a biopesticide, the gene for an excitatory insect-specific toxin from Buthus martensii Karsch (BmK IT1) was inserted into the AeDNV genome and cloned into pUCA plasmid. The coding sequence for green fluorescent protein was ligated to the C-terminus of the BmK IT1 gene as a screening marker. Recombinant and helper plasmids were cotransfected into C6/36 cells; wild-type viruses were the controls. The recombinant viruses were identified and quantified by real-time polymerase chain reaction and exposed to Ae. albopictus larvae for the evaluation of its bioinsecticidal activity. LT50 and LD50 bioassays showed that the recombinant AeDNV had stronger and faster pathogenic effects on Ae. albopictus than the wild-type virus. This is the first report on the recombinant AeDNA containing the insect-specific toxin, BmK IT1, which may be used to develop a novel type of insecticide. PMID:20810829

  1. [Analysis of storage proteins (prolamines, puroindolines and waxy) in common wheat lines Triticum aestivum L. x (Triticum timopheevii Zhuk. x Triticum tauschii) with complex resistance to fungal infections].

    PubMed

    Obukhova, L V; Laĭkova, L I; Shumnyĭ, V K

    2010-06-01

    Storage proteins (prolamines, puroindolines, and Waxy) were studied in common wheat introgression lines obtained with the use of the Saratovskaya 29 (S29) cultivar line and synthetic hexaploid wheat (Triticum timopheevii Zhuk. x T. tauschii) (Sintetik, Sin.) and displaying complex resistance to fungal infections. Comparative analysis of storage proteins in the introgression lines of common wheat Triticum aestivum L. and in the parental forms revealed the only line (BC5) having a substitution at the Gli-B2 locus from Sintetik. Hybrid lines subjected to nine back crosses with the recurrent parental form S29 and selections for resistance to pathogens can be considered as nearly isogenic for the selected trait and retaining the allelic composition of (1) prolamines responsible for the bread-making qualitiy, (2) puroindolines associated with grain texture, and (3) Waxy proteins responsible for nutritive qualities. These lines are valuable as donors of immunity in breeding programs without the loss of the quality of flour and grain as compared to the S29 line and are also important in searching for genes determining resistance to leaf and stem rust and to powdery mildew. The amphiploid has a number of characters (silent Glu-A 1 locus and Ha genotype) that can negatively affect the quality of flour and grain and thus should be taken into account when choosing this donor.

  2. Acoustic emissions (AE) during failure of granular media

    NASA Astrophysics Data System (ADS)

    Michlmayr, Gernot; Or, Dani

    2014-05-01

    The release of shallow landslides and other geological mass movements is the result of progressive failure accumulation. Mechanical failure in disordered geologic materials occurs in intermittent breakage episodes marking the disintegration or rearrangement of load-bearing elements. Abrupt strain energy release in such breakage episodes is associated with generation of elastic waves measurable as high-frequency (kHz range) acoustic emissions (AE). The close association of AE with progressive failure events hold a promise for using such noninvasive methods to assess the mechanical state of granular Earth materials or for the development early warning methods for shallow landslides. We present numerical simulations that incorporate damage accumulation and associated stress redistribution using a fiber-bundle model. The stress released from element failure (fibers) is redistributed to the surrounding elements and eventually triggers larger failure avalanches. AE signals generated from such events and eventually hitting a virtual sensor are modeled using visco-elastic wave propagation laws. The model captures the characteristic saw-tooth shape of the observed stress-strain curves obtained from strain-controlled experiments with glass beads, including large intermittent stress release events that stem from cascading failure avalanches. The model also reproduces characteristics of AE signatures and yield a good agreement between simulation results and experimental data. Linking mechanical and AE information in the proposed modeling framework offer a solid basis for interpretation of measured field data.

  3. Scratching the itch: management of scabies in A&E.

    PubMed

    Hadfield-Law, L

    2000-10-01

    Epidemics of scabies seem to occur in 20-25-year cycles. One of the resultant problems is that few A&E nurses practice through more than one epidemic and with each new outbreak of scabies, the latest generation of A&E nurses have to learn how to recognize and manage the disease. This article describes scabies, how to recognize it and the treatment options available. Although uncertainty remains, Permethrin is the first treatment of choice and should be used in the 5% cream form, not the 100% lotion. Crusted Norwegian scabies requires prompt and careful attention along with Specialist advice. The challenge for A&E staff is to recognize scabies, treat it appropriately and to help educate those most at risk.

  4. Determination of AES Orbit Elements Using Mixed Data

    NASA Astrophysics Data System (ADS)

    Kolesnik, S. Ja.; Strakhova, S. L.

    An algorithm is worked out and a program is compiled for a determination of AES (artificial Earth satellite) orbit elements using both goniometrical and range-finder observations of different precision. The observations of one or several passages carried out from one or several stations can be used. A number of observational stations and a number of observations are not limited in principle. When solving this task the AES ephemerides on the moments of observations are calculated for different sets of orbit elements. A parameter F is considered which is a function of orbit elements. The parameter presents a square-mean deviation of AES ephemeris position on the moments {J;} from its observed one. The determination of real orbit elements comes to minimizing of parameter F by orbit elements using a method of deformed polyhedron. When calculating the ephemeris the amendments for 2-d, 3-d, 4-th geopotential zone harmonics are considered.

  5. An Improved Recovery Algorithm for Decayed AES Key Schedule Images

    NASA Astrophysics Data System (ADS)

    Tsow, Alex

    A practical algorithm that recovers AES key schedules from decayed memory images is presented. Halderman et al. [1] established this recovery capability, dubbed the cold-boot attack, as a serious vulnerability for several widespread software-based encryption packages. Our algorithm recovers AES-128 key schedules tens of millions of times faster than the original proof-of-concept release. In practice, it enables reliable recovery of key schedules at 70% decay, well over twice the decay capacity of previous methods. The algorithm is generalized to AES-256 and is empirically shown to recover 256-bit key schedules that have suffered 65% decay. When solutions are unique, the algorithm efficiently validates this property and outputs the solution for memory images decayed up to 60%.

  6. A high performance hardware implementation image encryption with AES algorithm

    NASA Astrophysics Data System (ADS)

    Farmani, Ali; Jafari, Mohamad; Miremadi, Seyed Sohrab

    2011-06-01

    This paper describes implementation of a high-speed encryption algorithm with high throughput for encrypting the image. Therefore, we select a highly secured symmetric key encryption algorithm AES(Advanced Encryption Standard), in order to increase the speed and throughput using pipeline technique in four stages, control unit based on logic gates, optimal design of multiplier blocks in mixcolumn phase and simultaneous production keys and rounds. Such procedure makes AES suitable for fast image encryption. Implementation of a 128-bit AES on FPGA of Altra company has been done and the results are as follow: throughput, 6 Gbps in 471MHz. The time of encrypting in tested image with 32*32 size is 1.15ms.

  7. Summary of detection, location, and characterization capabilities of AE for continuous monitoring of cracks in reactors

    SciTech Connect

    Hutton, P.H.; Kurtz, R.J.; Friesel, M.A.; Pappas, R.A.; Skorpik, J.R.; Dawson, J.F.

    1984-10-01

    The objective of the program is to develop acoustic emission (AE) methods for continuous monitoring of reactor pressure boundaries to detect and evaluate crack growth. The approach involves three phases: develop relationships to identify crack growth AE signals and to use identified crack growth AE data to estimate flaw severity; evaluate and refine AE/flaw relationships through fatigue testing a heavy section vessel under simulated reactor conditions; and demonstrate continuous AE monitoring on a nuclear power reactor system.

  8. Identification of a Novel HIV-1 Intra-CRF01_AE in China: A Descendant of the Previously Identified CRF01_AE transmission clusters 1 and 6

    PubMed Central

    Ning, Chuanyi; Li, Xingguang; Tang, Weiming; Zhou, Bo; Cai, Weiping; Tucker, Joseph D.

    2015-01-01

    We report here a novel HIV-1 intra-CRF01_AE recombinant form (CRF01-1AE/CRF01-6AE) composed of CRF01_AE transmission clusters 1 and 6, identified among heterosexuals in Fujian, with one breakpoint observed in vif gene. The CRF01_AE region I (HXB2: 868-5184) of the recombinant was clustered with the CRF01_AE transmission cluster 1, which is mainly circulating among IDUs and heterosexuals from the southern and southwestern China, with the support of 100% bootstrap value. The CRF01_AE region II (HXB2: 5185-9605) of the recombinant was clustered with the CRF01_AE transmission cluster 6, which is mainly prevailing among heterosexuals from southern China, with the support of 100% bootstrap value. To our best knowledge, this is the first detection of a novel HIV-1 intra-CRF01_AE recombinant form (CRF01-1_AE/CRF01-6_AE) in Fujian Province, which indicates ongoing active HIV-1 transmission among heterosexuals in this region. It may help illustrate CRF01_AE genetic diversity and contribute to our understanding of HIV-1 epidemiology, pathogenesis, and vaccine development. PMID:26100011

  9. Decision-making in A&E by expert nurses.

    PubMed

    Marsden, J

    The A&E service at Manchester Royal Eye Hospital uses triage as a method of prioritising patients to ensure that those whose needs are urgent receive immediate attention. The service has been extended to include formalised telephone triage. This study investigates the way in which telephone triage decisions are made by nurse practitioners in A&E. Although the sample is small, interviews with nurse practitioners reinforce previous theories about expert knowledge and decision-making. The practitioners use a process of hypothesis testing and a systematic and complex framework for decision-making.

  10. PGSB PlantsDB: updates to the database framework for comparative plant genome research

    PubMed Central

    Spannagl, Manuel; Nussbaumer, Thomas; Bader, Kai C.; Martis, Mihaela M.; Seidel, Michael; Kugler, Karl G.; Gundlach, Heidrun; Mayer, Klaus F.X.

    2016-01-01

    PGSB (Plant Genome and Systems Biology: formerly MIPS) PlantsDB (http://pgsb.helmholtz-muenchen.de/plant/index.jsp) is a database framework for the comparative analysis and visualization of plant genome data. The resource has been updated with new data sets and types as well as specialized tools and interfaces to address user demands for intuitive access to complex plant genome data. In its latest incarnation, we have re-worked both the layout and navigation structure and implemented new keyword search options and a new BLAST sequence search functionality. Actively involved in corresponding sequencing consortia, PlantsDB has dedicated special efforts to the integration and visualization of complex triticeae genome data, especially for barley, wheat and rye. We enhanced CrowsNest, a tool to visualize syntenic relationships between genomes, with data from the wheat sub-genome progenitor Aegilops tauschii and added functionality to the PGSB RNASeqExpressionBrowser. GenomeZipper results were integrated for the genomes of barley, rye, wheat and perennial ryegrass and interactive access is granted through PlantsDB interfaces. Data exchange and cross-linking between PlantsDB and other plant genome databases is stimulated by the transPLANT project (http://transplantdb.eu/). PMID:26527721

  11. Gravity waves in the thermosphere observed by the AE satellites

    NASA Technical Reports Server (NTRS)

    Gross, S. H.; Reber, C. A.; Huang, F. T.

    1983-01-01

    Atmospheric Explorer (AE) satellite data were used to investigate the spectra characteristics of wave-like structure observed in the neutral and ionized components of the thermosphere. Power spectral analysis derived by the maximum entropy method indicate the existence of a broad spectrum of scale sizes for the fluctuations ranging from tens to thousands of kilometers.

  12. 19 CFR 192.11 - Description of the AES.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 30 of the Census Regulations (15 CFR part 30, subpart E), denominated Electronic Filing Requirements... TREASURY (CONTINUED) EXPORT CONTROL Filing of Export Information Through the Automated Export System (AES... commodity export information (see, 15 CFR 30.16) to submit such information electronically, rather than...

  13. 15 CFR 758.2 - Automated Export System (AES).

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... that agency. See 15 CFR 30.62(b) of the FTSR. (b) BIS Option 4 application process. When AES filers... Regulations (FTSR) (15 CFR Part 30) contain provisions for filing Shipper's Export Declarations (SEDs... Census Bureau for certification and approval through a Letter of Intent (see 15 CFR 30.60(b) and...

  14. Dynamic evolution of resistance gene analogs in the orthologous genomic regions of powdery mildew resistance gene MlIW170 in Triticum dicoccoides and Aegilops tauschii

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat is one of the most important staple grain crops in the world. Powdery mildew disease caused by Blumeria graminis f.sp. tritici can result in significant losses in both grain yield and quality in wheat. In this study, the wheat powdery mildew resistance gene MlIW170 locus located on the short ...

  15. Supraphysiologic levels of the AML1-ETO isoform AE9a are essential for transformation.

    PubMed

    Link, Kevin A; Lin, Shan; Shrestha, Mahesh; Bowman, Melissa; Wunderlich, Mark; Bloomfield, Clara D; Huang, Gang; Mulloy, James C

    2016-08-01

    Chromosomal translocation 8;21 is found in 40% of the FAB M2 subtype of acute myeloid leukemia (AML). The resultant in-frame fusion protein AML1-ETO (AE) acts as an initiating oncogene for leukemia development. AE immortalizes human CD34(+) cord blood cells in long-term culture. We assessed the transforming properties of the alternatively spliced AE isoform AE9a (or alternative splicing at exon 9), which is fully transforming in a murine retroviral model, in human cord blood cells. Full activity was realized only upon increased fusion protein expression. This effect was recapitulated in the AE9a murine AML model. Cotransduction of AE and AE9a resulted in a strong selective pressure for AE-expressing cells. In the context of AE, AE9a did not show selection for increased expression, affirming observations of human t(8;21) patient samples where full-length AE is the dominant protein detected. Mechanistically, AE9a showed defective transcriptional regulation of AE target genes that was partially corrected at high expression. Together, these results bring an additional perspective to our understanding of AE function and highlight the contribution of oncogene expression level in t(8;21) experimental models. PMID:27457952

  16. Identification of Novel Recombinant Forms of Hepatitis B Virus Generated from Genotypes Ae and G in HIV-1-Positive Japanese Men Who Have Sex with Men.

    PubMed

    Kojima, Yoko; Kawahata, Takuya; Mori, Haruyo; Furubayashi, Keiichi; Taniguchi, Yasushi; Itoda, Ichiro; Komano, Jun

    2015-07-01

    The rare hepatitis B virus (HBV) genotype G (HBV/G) coinfects HIV-1-positive individuals along with HBV/A and generates recombinants. However, the circulation of HBV A/G recombinants remains poorly understood. This molecular epidemiologic study examined HBV A/G recombinants in Japanese HIV-1-positive men who have sex with men (MSM). Initially, blood specimens submitted for confirmatory tests of HIV infection in Osaka and Tokyo, Japan, from 2006 to 2013 were examined for HIV-1, and HIV-1-positive specimens were screened for HBV. Among 817 specimens from HIV-1-positive individuals, HBsAg was detected in 59 specimens; of these, HBV/Ae (alternatively A2), a subgenotype of HBV/A prevalent in Europe and North America, was identified in 70.2%, HBV/C in 17.5%, and HBV/G in 10.5%, and HBV/E in 1.8% according to the core gene sequence. The full-length genome analysis of HBV was performed on HBV/G-positive specimens because some HBV A/G recombinants were historically overlooked by genotyping based on a partial genome analysis. It revealed that five of the specimens contained novel Ae/G recombinants, the core gene of which had a high sequence similarity to HBV/G. Detailed analyses showed that novel recombinants were coinfected with HBV/Ae in a recombinant-dominant fashion. No major drug-resistant mutations were found in the newly identified HBV Ae/G recombinants. Some of the individuals asymptomatically coinfected with HIV/HBV suffered mild liver injury. This study demonstrated that novel Ae/G HBV recombinants were identified in Japanese HIV-1-positive MSM. The pathogenicity of novel HBV Ae/G recombinants should be examined in a future longitudinal study. Surveillance of such viruses in HIV-1-positive individuals should be emphasized.

  17. Identification of Novel Recombinant Forms of Hepatitis B Virus Generated from Genotypes Ae and G in HIV-1-Positive Japanese Men Who Have Sex with Men

    PubMed Central

    Kawahata, Takuya; Mori, Haruyo; Furubayashi, Keiichi; Taniguchi, Yasushi; Itoda, Ichiro; Komano, Jun

    2015-01-01

    Abstract The rare hepatitis B virus (HBV) genotype G (HBV/G) coinfects HIV-1-positive individuals along with HBV/A and generates recombinants. However, the circulation of HBV A/G recombinants remains poorly understood. This molecular epidemiologic study examined HBV A/G recombinants in Japanese HIV-1-positive men who have sex with men (MSM). Initially, blood specimens submitted for confirmatory tests of HIV infection in Osaka and Tokyo, Japan, from 2006 to 2013 were examined for HIV-1, and HIV-1-positive specimens were screened for HBV. Among 817 specimens from HIV-1-positive individuals, HBsAg was detected in 59 specimens; of these, HBV/Ae (alternatively A2), a subgenotype of HBV/A prevalent in Europe and North America, was identified in 70.2%, HBV/C in 17.5%, and HBV/G in 10.5%, and HBV/E in 1.8% according to the core gene sequence. The full-length genome analysis of HBV was performed on HBV/G-positive specimens because some HBV A/G recombinants were historically overlooked by genotyping based on a partial genome analysis. It revealed that five of the specimens contained novel Ae/G recombinants, the core gene of which had a high sequence similarity to HBV/G. Detailed analyses showed that novel recombinants were coinfected with HBV/Ae in a recombinant-dominant fashion. No major drug-resistant mutations were found in the newly identified HBV Ae/G recombinants. Some of the individuals asymptomatically coinfected with HIV/HBV suffered mild liver injury. This study demonstrated that novel Ae/G HBV recombinants were identified in Japanese HIV-1-positive MSM. The pathogenicity of novel HBV Ae/G recombinants should be examined in a future longitudinal study. Surveillance of such viruses in HIV-1-positive individuals should be emphasized. PMID:25825936

  18. A Novel HIV-1 CRF01_AE/B recombinant among men who have sex with men in Jiangsu Province, China.

    PubMed

    Guo, Hongxiong; Hu, Haiyang; Zhou, Ying; Yang, Haitao; Huan, Xiping; Qiu, Tao; Fu, Gengfeng; Ding, Ping

    2014-07-01

    CRF01_AE and subtype B are the two of major HIV-1 clades circulating in China. HIV spread more rapidly among men who have sex with men (MSM) than among populations with other risk behaviors. In Jiangsu province in China, the HIV-1 incidence among MSM was more than 3.8%. Our previous study showed that almost equal proportions of CRF01_AE, B, and CRF07_BC were circulating among MSM. Moreover, many kinds of CRF01Bs have been identified among MSM in Southeast Asia in recent years. It is therefore inevitable that recombination between CRF01_AE and subtype B will emerge among MSM in Jiangsu province in China. Here we identify a novel recombinant of CRF01_AE/B that has a distinctly different genome structure from other CRF01Bs and unique recombinant forms (URFs) previously identified. An analysis of the near full-length sequence of JS2010001 showed that it is composed of at least three interlaced CRF01_AE and B segments. Recently, many kinds of URFs and C circulating recombinant forms (CRFs) have emerged among MSM in China within a short period of time, which suggests that dual infection of HIV-1 among MSM in China is very common and that more effective intervening measures to prevent the spread of HIV among MSM should be taken.

  19. Resistance to cardiomyocyte hypertrophy in ae3 −/− mice, deficient in the AE3 Cl−/HCO3− exchanger

    PubMed Central

    2014-01-01

    Background Cardiac hypertrophy is central to the etiology of heart failure. Understanding the molecular pathways promoting cardiac hypertrophy may identify new targets for therapeutic intervention. Sodium-proton exchanger (NHE1) activity and expression levels in the heart are elevated in many models of hypertrophy through protein kinase C (PKC)/MAPK/ERK/p90RSK pathway stimulation. Sustained NHE1 activity, however, requires an acid-loading pathway. Evidence suggests that the Cl−/HCO3− exchanger, AE3, provides this acid load. Here we explored the role of AE3 in the hypertrophic growth cascade of cardiomyocytes. Methods AE3-deficient (ae3 −/− ) mice were compared to wildtype (WT) littermates to examine the role of AE3 protein in the development of cardiomyocyte hypertrophy. Mouse hearts were assessed by echocardiography. As well, responses of cultured cardiomyocytes to hypertrophic stimuli were measured. pH regulation capacity of ae3 −/− and WT cardiomyocytes was assessed in cultured cells loaded with the pH-sensitive dye, BCECF-AM. Results ae3 −/− mice were indistinguishable from wild type (WT) mice in terms of cardiovascular performance. Stimulation of ae3 −/− cardiomyocytes with hypertrophic agonists did not increase cardiac growth or reactivate the fetal gene program. ae3 −/− mice are thus protected from pro-hypertrophic stimulation. Steady state intracellular pH (pHi) in ae3 −/− cardiomyocytes was not significantly different from WT, but the rate of recovery of pHi from imposed alkalosis was significantly slower in ae3 −/− cardiomyocytes. Conclusions These data reveal the importance of AE3-mediated Cl−/HCO3− exchange in cardiovascular pH regulation and the development of cardiomyocyte hypertrophy. Pharmacological antagonism of AE3 is an attractive approach in the treatment of cardiac hypertrophy. PMID:25047106

  20. Differential inhibition of AE1 and AE2 anion exchangers by oxonol dyes and by novel polyaminosterol analogs of the shark antibiotic squalamine.

    PubMed

    Alper, S L; Chernova, M N; Williams, J; Zasloff, M; Law, F Y; Knauf, P A

    1998-01-01

    Oxonol and polyaminosterol drugs were examined as inhibitors of recombinant mouse AE1 and AE2 anion exchangers expressed in Xenopus laevis oocytes and were compared as inhibitors of AE1-mediated anion flux in red cells and in HL-60 cells that express AE2. The oxonols WW-781, diBA(5)C4, and diBA(3)C4 inhibited HL-60 cell Cl-/Cl- exchange with IC50 values from 1 to 7 microM, 100-1000 times less potent than their IC50 values for red cell Cl-/anion exchange. In Xenopus oocytes, diBA(5)C4 inhibited AE1-mediated Cl- efflux several hundred times more potently than that mediated by AE2. Several novel squalamine-related polyaminosterols were also evaluated as anion exchange inhibitors. In contrast to diBA(5)C4, polyaminosterol 1361 inhibited oocyte-expressed AE2 8-fold more potently than AE1 (IC50 0.6 versus 5.2 microM). The 3-fold less potent desulfo-analog, 1360, showed similar preference for AE2. It was found that 1361 also partially inhibited Cl- efflux from red cells, whereas neither polyaminosterol inhibited Cl efflux from HL60 cells. Thus, the oxonol diBA(5)C4 is >100-fold more potent as an inhibitor of AE1 than of AE2, whereas the polyaminosterols 1360 and 1361 are 8-fold more potent as inhibitors of AE2 than of AE1. Assay conditions and cell type influenced IC50 values for both classes of compounds. PMID:10353714

  1. Paediatric unplanned reattendance rate: A&E clinical quality indicators.

    PubMed

    O'Loughlin, Kate; Hacking, Katie A; Simmons, Naomi; Christian, William; Syahanee, R; Shamekh, Ahmed; Prince, Nicholas J

    2013-03-01

    The new accident and emergency (A&E) unplanned reattendance rate clinical quality indicator is intended to drive reduction of avoidable reattendances. Validation data for reattendance rates in children are awaited. The aim of this three site observational study is to establish the rate and reasons for unplanned reattendance to UK paediatric A&Es. Each centre undertook retrospective case note review of children attending at least twice within 7 days. Unplanned reattendance rates at the three centres were 5.1%, 5.2% and 4.4%. Reducing unnecessary unplanned reattendances is beneficial for patients, service capacity and efficacy. This study has identified two groups for targeting reattendance reduction: parents of children returning with the same diagnosis, severity unchanged and parents who bypass primary care resources. Clear communication and early involvement of experienced clinicians are paramount. This study has indicated that a 1%-5% unplanned reattendance rate is realistic, achievable and can drive improvement in children's services. PMID:23287643

  2. Paediatric unplanned reattendance rate: A&E clinical quality indicators.

    PubMed

    O'Loughlin, Kate; Hacking, Katie A; Simmons, Naomi; Christian, William; Syahanee, R; Shamekh, Ahmed; Prince, Nicholas J

    2013-03-01

    The new accident and emergency (A&E) unplanned reattendance rate clinical quality indicator is intended to drive reduction of avoidable reattendances. Validation data for reattendance rates in children are awaited. The aim of this three site observational study is to establish the rate and reasons for unplanned reattendance to UK paediatric A&Es. Each centre undertook retrospective case note review of children attending at least twice within 7 days. Unplanned reattendance rates at the three centres were 5.1%, 5.2% and 4.4%. Reducing unnecessary unplanned reattendances is beneficial for patients, service capacity and efficacy. This study has identified two groups for targeting reattendance reduction: parents of children returning with the same diagnosis, severity unchanged and parents who bypass primary care resources. Clear communication and early involvement of experienced clinicians are paramount. This study has indicated that a 1%-5% unplanned reattendance rate is realistic, achievable and can drive improvement in children's services.

  3. A Novel Byte-Substitution Architecture for the AES Cryptosystem

    PubMed Central

    Hossain, Fakir Sharif; Ali, Md. Liakot

    2015-01-01

    The performance of Advanced Encryption Standard (AES) mainly depends on speed, area and power. The S-box represents an important factor that affects the performance of AES on each of these factors. A number of techniques have been presented in the literature, which have attempted to improve the performance of the S-box byte-substitution. This paper proposes a new S-box architecture, defining it as ultra low power, robustly parallel and highly efficient in terms of area. The architecture is discussed for both CMOS and FPGA platforms, and the pipelined architecture of the proposed S-box is presented for further time savings and higher throughput along with higher hardware resources utilization. A performance analysis and comparison of the proposed architecture is also conducted with those achieved by the existing techniques. The results of the comparison verify the outperformance of the proposed architecture in terms of power, delay and size. PMID:26491967

  4. A Novel Byte-Substitution Architecture for the AES Cryptosystem.

    PubMed

    Hossain, Fakir Sharif; Ali, Md Liakot

    2015-01-01

    The performance of Advanced Encryption Standard (AES) mainly depends on speed, area and power. The S-box represents an important factor that affects the performance of AES on each of these factors. A number of techniques have been presented in the literature, which have attempted to improve the performance of the S-box byte-substitution. This paper proposes a new S-box architecture, defining it as ultra low power, robustly parallel and highly efficient in terms of area. The architecture is discussed for both CMOS and FPGA platforms, and the pipelined architecture of the proposed S-box is presented for further time savings and higher throughput along with higher hardware resources utilization. A performance analysis and comparison of the proposed architecture is also conducted with those achieved by the existing techniques. The results of the comparison verify the outperformance of the proposed architecture in terms of power, delay and size. PMID:26491967

  5. Optical spectrophotometry of oscillations and flickering in AE Aquarii

    NASA Technical Reports Server (NTRS)

    Welsh, William F.; Horne, Keith; Oke, J. B.

    1993-01-01

    We observed rapid variations in the nova-like cataclysmic variable AE Aquarii for 1.7 hr with 4.3 s time resolution using the 30-channel (3227-10494 A) spectrophotometer on the Hale 5 m telescope. The 16.5 and 33.0 s oscillations show a featureless blue spectrum that can be represented by a blackbody with temperature and area much smaller than the accretion disk. Models consisting of the sum of a K star spectrum and a hydrogen slab in LTE at T = 6000-10,000 K can fit the spectrum of AE Aquarii reasonably well. The spectrum of a flare indicates optically thin gas with T = 8000-12,000 K. The energy released by the flare is large compared to typical stellar flares.

  6. Petchienes A-E, Meroterpenoids from Ganoderma petchii.

    PubMed

    Gao, Qin-Lei; Guo, Ping-Xia; Luo, Qi; Yan, Hui; Cheng, Yong-Xian

    2015-12-01

    Petchienes A-E (1-5), five new meroterpenoids, were isolated from the fruiting bodies of Ganoderma petchii. Their structures, including absolute configurations, were elucidated by means of spectroscopic and computational methods. Compound 4 was isolated as a racemic mixture, which was finally purified by chiral HPLC to yield individual (-) and (+)-antipodes. Biological evaluation showed that compounds 2 and (-)-4 could increase intracellular free calcium concentration at 10 μM in HEK-293 cells. PMID:26882654

  7. On the binarity of Herbig Ae/Be stars

    NASA Astrophysics Data System (ADS)

    Baines, Deborah; Oudmaijer, René D.; Porter, John M.; Pozzo, Monica

    2006-04-01

    We present high-resolution spectro-astrometry of a sample of 28 Herbig Ae/Be and three F-type pre-main-sequence stars. The spectro-astrometry, which is essentially the study of unresolved features in long-slit spectra, is shown from both empirical and simulated data to be capable of detecting binary companions that are fainter by up to 6mag at separations larger than ~0.1arcsec. The nine targets that were previously known to be binary are all detected. In addition, we report the discovery of six new binaries and present five further possible binaries. The resulting binary fraction is 68 +/- 11 per cent. This overall binary fraction is the largest reported for any observed sample of Herbig Ae/Be stars, presumably because of the exquisite sensitivity of spectro-astrometry for detecting binary systems. The data hint that the binary frequency of the Herbig Be stars is larger than that of the Herbig Ae stars. The Appendix presents model simulations to assess the capabilities of spectro-astrometry and reinforces the empirical findings. Most spectro-astrometric signatures in this sample of Herbig Ae/Be stars can be explained by the presence of a binary system. Two objects, HD 87643 and Z CMa, display evidence for asymmetric outflows. Finally, the position angles of the binary systems have been compared with available orientations of the circumprimary disc and these appear to be coplanar. The alignment between the circumprimary discs and the binary systems strongly suggests that the formation of binaries with intermediate-mass primaries is due to fragmentation as the alternative, stellar capture, does not naturally predict aligned discs. The alignment extends to the most massive B-type stars in our sample. This leads us to conclude that formation mechanisms that do result in massive stars, but predict random angles between the binaries and the circumprimary discs, such as stellar collisions, are also ruled out for the same reason.

  8. HARPS spectropolarimetry of Herbig Ae/Be stars

    NASA Astrophysics Data System (ADS)

    Hubrig, S.; Ilyin, I.; Schöller, M.; Lo Curto, G.

    2013-12-01

    Our knowledge of the presence and the strength of magnetic fields in intermediate-mass pre-main-sequence stars remains very poor. We present new magnetic field measurements in six Herbig Ae/Be stars observed with HARPS in spectropolarimetric mode. We downloaded from the European Southern Observatory (ESO) archive the publically available HARPS spectra for six Herbig Ae/Be stars. Wavelength shifts between right- and left-hand side circularly polarised spectra were interpreted in terms of a longitudinal magnetic field , using the moment technique introduced by Mathys. The application of the moment technique to the HARPS spectra allowed us in addition to study the presence of the crossover effect and quadratic magnetic fields. Our search for longitudinal magnetic fields resulted in first detections of weak magnetic fields in the Herbig Ae/Be stars HD 58647 and HD 98922. Further, we confirm the previous tentative detection of a weak magnetic field in HD 104237 by Donati et al. and confirm the previous detection of a magnetic field in the Herbig Ae star HD 190073. Surprisingly, the measured longitudinal magnetic field of HD 190073, < Bz >=91±18 G at a significance level of 5σ is not in agreement with the measurement results of Alecian et al. (2013), < Bz >=-10±20 G, who applied the LSD method to exactly the same data. No crossover effect was detected for any star in the sample. Only for HD 98922 the crossover effect was found to be close to 3σ with a measured value of -4228±1443 km s-1 G. A quadratic magnetic field of the order of 10 kG was detected in HD 98922, and of ˜3.5 kG in HD 104237. Based on data obtained from the ESO Science Archive Facility under requests MSCHOELLER 51301, 51324, 36608-36611.

  9. The pulsar-like white dwarf in AE Aquarii

    NASA Astrophysics Data System (ADS)

    Ikhsanov, Nazar R.

    1998-10-01

    The spindown power of the compact companion in the close binary system AE Aqr essentially exceeds the bolometrical luminosity of the system. The interpretation of this phenomenon under various assumptions about the state and the nature of the primary companion is discussed. It is shown that the rapid braking on the compact companion of AE Aqr can be explained in terms of the pulsar mechanism provided the magnetic moment of the compact star mu ga 1.4 x 10(34) {R_mm G cm(3}) , that implies a magnetic field strength at the surface of the white dwarf of about 50 MG. Under this condition the spindown power is used predominantly for the generation of magneto-dipole waves and particle acceleration. A stream-fed, diskless mass-exchange picture with the average rate of mass transfer dot {M} ~ (0.5/5) x 10(17) {R_mm g s(-1}) is expected in the frame of the suggested model. Similarity of some properties of the X-ray emission observed from AE Aqr and canonical radio pulsars in the ROSAT energy range (e.g. the power law spectrum of pulsing component with alpha ~ -2 and the ratio L_{R_mm X}/L_{R_mm sd} ~ 10(-3) ) allows to suggest common mechanisms of particle acceleration and the polar cap heating in these systems.

  10. The Disk and Environment of Herbig Ae Star HD 100453

    NASA Astrophysics Data System (ADS)

    Collins, Karen; Grady, C.; Wisniewski, J. P.; Hamaguchi, K.; van Boekel, R.; Brittain, S.; Carmona, A.; Williger, G.; van den Ancker, M.; Sitko, M.; Carpenter, W. J.; Woodgate, B.; Henning, T.; Petre, R.

    2007-05-01

    We present a multi-wavelength examination of the inner disk and environment of the near-ZAMS Herbig Ae star HD 100453. Chandra ACIS-S imagery shows that the Herbig Ae star has Lx=2.6x1029 erg s-1, with Lx/Lbol and a pulse height spectrum similar to β Pic Moving Group early F stars. In addition to the previously noted deficit of warm dust, the inner disk contains little molecular gas either in CO or H2. The disk also lacks the conspicuous Fe II emission and continuum seen in FUV spectra of actively accreting Herbig Ae stars. Our FUSE data suggest an accretion rate below 1x10-9 solar masses per year, while the absence of jet activity in HST ACS imagery suggests a mass loss rate below 3.5x10-11 solar masses per year. The radius of the disk wall inferred by modeling of the IR SED is sufficiently large to preclude photoevaporation of the inner disk as the sole mechanism for disk clearing, suggesting that there may be an additional body in the inner disk. The Chandra data exclude this body being a star of any mass. KC is supported by a Kentucky Space Grant Consortium Fellowship under NASA National Space Grant College and Fellowship Program Grant NNG05GH07H.

  11. Compact and Secure Design of Masked AES S-Box

    NASA Astrophysics Data System (ADS)

    Zakeri, Babak; Salmasizadeh, Mahmoud; Moradi, Amir; Tabandeh, Mahmoud; Shalmani, Mohammad T. Manzuri

    Composite field arithmetic is known as an alternative method for lookup tables in implementation of S-box block of AES algorithm. The idea is to breakdown the computations to lower order fields and compute the inverse there. Recently this idea have been used both for reducing the area in implementation of S-boxes and masking implementations of AES algorithm. The most compact design using this technique is presented by Canright using only 92 gates for an S-box block. In another approach, IAIK laboratory has presented a masked implementation of AES algorithm with higher security comparing common masking methods using Composite field arithmetic. Our work in this paper is to use basic ideas of the two approaches above to get a compact masked S-box. We shall use the idea of masking inversion of IAIK's masked S-box but we will rewrite the equations using normal basis. We arrange the terms in these equations in a way that the optimized functions in Canright's compact S-box can be used for our design. An implementation of IAIK's masked S-box is also presented using Canright's polynomial functions to have a fair comparison between our design and IAIK's design. Moreover, we show that this design which uses two special normal basis for GF(16) and GF(4) is the smallest. We shall also prove the security of this design using some lemmas.

  12. 15 CFR 758.1 - The Shipper's Export Declaration (SED) or Automated Export System (AES) record.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...) or Automated Export System (AES) record. 758.1 Section 758.1 Commerce and Foreign Trade Regulations... (SED) or Automated Export System (AES) record. (a) The Shipper's Export Declaration (SED) or Automated Export System (AES) record. The SED (Form 7525-V, Form 7525-V-Alt, or Automated Export System record)...

  13. 15 CFR 758.1 - The Automated Export System (AES) record.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... CLEARANCE REQUIREMENTS § 758.1 The Automated Export System (AES) record. (a) The Shipper's Export Declaration (SED) or Automated Export System (AES) record. The SED (Form 7525-V, Form 7525-V-Alt, or Automated... AES record requirements. When an exemption from filing the Shipper's Export Declaration or...

  14. 15 CFR 758.1 - The Shipper's Export Declaration (SED) or Automated Export System (AES) record.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...) or Automated Export System (AES) record. 758.1 Section 758.1 Commerce and Foreign Trade Regulations... (SED) or Automated Export System (AES) record. (a) The Shipper's Export Declaration (SED) or Automated Export System (AES) record. The SED (Form 7525-V, Form 7525-V-Alt, or Automated Export System record)...

  15. 15 CFR 758.1 - The Shipper's Export Declaration (SED) or Automated Export System (AES) record.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ...) or Automated Export System (AES) record. 758.1 Section 758.1 Commerce and Foreign Trade Regulations... (SED) or Automated Export System (AES) record. (a) The Shipper's Export Declaration (SED) or Automated Export System (AES) record. The SED (Form 7525-V, Form 7525-V-Alt, or Automated Export System record)...

  16. Automatic Event Detection in Noisy Environment for Material Process Monitoring by Laser AE Method

    NASA Astrophysics Data System (ADS)

    Ito, K.; Kuriki, H.; Araki, H.; Kuroda, S.; Enoki, M.

    2014-06-01

    Laser acoustic emission (AE) method is a unique in-situ and non-contact nondestructive evaluation (NDE) method. It has a capability to detect signals generated from crack generation and propagation, friction and other physical phenomena in materials even in high temperature environment. However, laser AE system has lower signal-to-noise ratio compared to the conventional AE system using PZT sensors, so it is difficult to apply this method in noisy environment. A novel AE measurement system to detect events in such difficult environments was developed. This system could continuously record all AE waveforms and enable unrestricted post-analyses. Noise reduction filters in frequency domain coupling with a new AE event extraction using multiple threshold values showed a good potential for AE signal processing. This system was successfully applied for crack monitoring of plasma spray deposition process of ceramic coating.

  17. Mid-IR Spectra Herbig Ae/Be Stars

    NASA Technical Reports Server (NTRS)

    Wooden, Diane; Witteborn, Fred C. (Technical Monitor)

    1997-01-01

    Herbig Ae/Be stars are intermediate mass pre-main sequence stars, the higher mass analogues to the T Tauri stars. Because of their higher mass, they are expected form more rapidly than the T Tauri stars. Whether the Herbig Ae/Be stars accrete only from collapsing infalling envelopes or whether accrete through geometrically flattened viscous accretion disks is of current debate. When the Herbig Ae/Be stars reach the main sequence they form a class called Vega-like stars which are known from their IR excesses to have debris disks, such as the famous beta Pictoris. The evolutionary scenario between the pre-main sequence Herbig Ae/Be stars and the main sequence Vega-like stars is not yet revealed and it bears on the possibility of the presence of Habitable Zone planets around the A stars. Photometric studies of Herbig Ae/Be stars have revealed that most are variable in the optical, and a subset of stars show non-periodic drops of about 2 magnitudes. These drops in visible light are accompanied by changes in their colors: at first the starlight becomes reddened, and then it becomes bluer, the polarization goes from less than 0.1 % to roughly 1% during these minima. The theory postulated by V. Grinnin is that large cometary bodies on highly eccentric orbits occult the star on their way to being sublimed, for systems that are viewed edge-on. This theory is one of several controversial theories about the nature of Herbig Ae/Be stars. A 5 year mid-IR spectrophotometric monitoring campaign was begun by Wooden and Butner in 1992 to look for correlations between the variations in visible photometry and mid-IR dust emission features. Generally the approximately 20 stars that have been observed by the NASA Ames HIFOGS spectrometer have been steady at 10 microns. There are a handful, however, that have shown variable mid-IR spectra, with 2 showing variations in both the continuum and features anti-correlated with visual photometry, and 3 showing variations in the emission

  18. Aedes aegypti genomics.

    PubMed

    Severson, David W; Knudson, Dennis L; Soares, Marcelo B; Loftus, Brendan J

    2004-07-01

    The mosquito, Aedes aegypti, is the primary, worldwide arthropod vector for the yellow fever and dengue viruses. As it is also one of the most tractable mosquito species for laboratory studies, it has been and remains one of the most intensively studied arthropod species. This has resulted in the development of detailed genetic and physical maps for Ae. aegypti and considerable insight into its genome organization. The research community is well-advanced in developing important molecular tools that will facilitate a whole genome sequencing effort. This includes generation of BAC clone end sequences, physical mapping of selected BAC clones and generation of EST sequences. Whole genome sequence information for Ae. aegypti will provide important insight into mosquito chromosome evolution and allow for the identification of genes and gene function. These functions may be common to all mosquitoes or perhaps unique to individual species, possibly specific to host-seeking and blood-feeding behaviors, as well as the innate immune response to pathogens encountered during blood-feeding. This information will be invaluable to the global effort to develop novel strategies for preventing arthropod-borne disease transmission.

  19. AES XPS study of chromium carbides and chromium iron carbides

    NASA Astrophysics Data System (ADS)

    Detroye, M.; Reniers, F.; Buess-Herman, C.; Vereecken, J.

    1999-04-01

    The nature of chromium rich carbides which precipitate at grain boundaries in steels is still not perfectly understood. We performed a multitechnique approach on model chromium carbide and chromium-iron carbide samples: Auger Electron Spectroscopy (AES), X-ray Photoelectron Spectroscopy (XPS), X-ray Diffraction (XRD), and High Energy Electron Diffraction (HEED) were used to characterise the samples. Significant chemical shifts were observed for the Cr, Fe and C XPS peaks in the M 7C 3 compound (M stands for metal), indicating unambiguously that the compound formed is a mixed iron-chromium carbide.

  20. Artificial epi-Retinal Prosthesis (AeRP)

    NASA Astrophysics Data System (ADS)

    Doorish, John F.

    2006-09-01

    There are several research projects going on around the world, which are attempting to develop a prosthetic device to restore sight to the blind. This paper describes the efforts of Second Sight of New York, Inc. The device being developed is called an Artificial epi-Retinal Prosthesis (AeRP), which is basically a small optical computer that fits into the intraocular space of the eye. The AeRP is designed to draw light into the device by specially designed fibre optics. The light is ‘digitized’ by the fibre optic system and then directed to individual photodiode cells making up concentric cylinders thus providing several hundred photodiode cells in the device. The produced electrical stimulation from each cell is then delivered to the retinal ganglion cells by a specially designed delivery system utilizing electrically conducting polymer strands (ECP), which sit on an ‘umbrella’ at the back of the device. The retinal ganglion cells receive the electrical stimulation, which would then be transmitted through the visual system of the brain. There are several innovations in this approach as compared to the other projects. They include, first the design, which will allow for a high number of PC to produce electrical stimulation that will stimulate multiple RGC per PC; the use of the ECP strands has not been used in such an approach before this. Tests have revealed that nerve cells have a good affinity for the material of the ECP. The use of the ECP as well as the fact that the AeRP is completely photovoltaic, with no external power sources, implies that there will not be high heat build-up in the back of the eye, which might damage RGC. A smaller version of the AeRP called the Mini epi-Retinal Prosthesis (MeRP) is the subject of a complimentary paper. It is being built now and will be tested in cell culture studies to determine the efficacy of the design and materials. No actual implants have been performed yet.

  1. Determination of the AES attitude from the angular velocity data

    NASA Astrophysics Data System (ADS)

    Eliasberg, P. E.; Pivovarov, M. L.

    1984-10-01

    A nonlinear algorithm that could be used for the AES satellite to determine its motions relative to its mass center using rate sensor data is presented. The calculations are performed relative to absolute geocentric and satellite body coordinate systems. A transfer matrix of cosines relates positions and velocities in one system to positions and velocities in the other. The orientation algorithm is obtained with a matrix kinematic equation solved by a least squares technique. Sample calculations for the Intercosmos 17 satellite, employing sun sensor and magnetometer data, show the algorithm's capabilities for generating the satellite variations in the orbital coordinate system. Yaw, roll and pitch data are obtained.

  2. Quantification of AES depth profiles by the MRI model

    NASA Astrophysics Data System (ADS)

    Kovač, Janez; Zalar, Anton; Praček, Borut

    2003-02-01

    The main physical effects that contribute to interface broadening in the sputter depth profiles of polycrystalline metallic multilayer structures were studied by comparison of measured and simulated AES depth profiles. An algorithm based on the so-called mixing-roughness-information depth (MRI) model was used to simulate AES depth profiles of Ni/Cr multilayer structures with different roughnesses of the initial surfaces. The simulated depth profiles were compared with measurements performed at two different depth profiling parameters on the Ni/Cr and Al/Ni/Cr multilayer structures with an initial surface roughness of about 1.0 and 21.5 nm, respectively. The comparison of simulated and measured depth profiles enabled us to separate and estimate different contributions to the interface broadening, as well as their dependence on the sputter depth. We found that roughness was the dominant factor related to depth resolution with respect to the information depth and atomic mixing contribution. The values of roughness introduced into the simulation algorithm coincided well with the values measured by AFM at the initial surface and after depth profiling. The results showed the capability of the simulation procedure based on the MRI model to separate and evaluate different contributions to the depth resolution.

  3. The anion exchanger Ae2 is required for enamel maturation in mouse teeth

    PubMed Central

    Lyaruu, DM; Bronckers, ALJJ; Mulder, L; Mardones, P; Medina, JF; Kellokumpu, S; Elferink, RPJ Oude; Everts, V

    2008-01-01

    One of the mechanisms by which epithelial cells regulate intracellular pH is exchanging bicarbonate for Cl−. We tested the hypothesis that in ameloblasts the anion exchanger-2 (Ae2) is involved in pH regulation during maturation stage amelogenesis. Quantitative X-ray microprobe mineral content analysis, scanning electron microscopy, histology, micro-computed tomography and Ae2 immuno-localisation analyses were applied to Ae2-deficient and wild-type mouse mandibles. Immuno-localisation of Ae2 in wild-type mouse incisors showed a very strong expression of Ae2 in the basolateral membranes of the maturation stage ameloblasts. Strikingly, zones of contiguous ameloblasts were found within the maturation stage in which Ae2 expression was extremely low as opposed to neighbouring cells. Maturation stage ameloblasts of the Ae2a,b−/− mice failed to stain for Ae2 and showed progressive disorganisation as enamel development advanced. Maturation stage enamel of the Ae2a,b−/− mice contained substantially less mineral and more protein than wild-type enamel as determined by quantitative X-ray microanalysis. Incisor enamel was more severely affected than molar enamel. Scanning electron microscopy revealed that the rod-inter-rod structures of the Ae2a,b−/− mice incisor enamel were absent. Mineral content of dentine and bone of Ae2a,b−/− mice was not significantly different from wild-type mice. The enamel from knockout mouse teeth wore down much faster than that from wild-type litter mates. Basolateral bicarbonate secretion via the anionic exchanger Ae2 is essential for mineral growth in the maturation stage enamel. The observed zonal expression of Ae2 in the maturation stage ameloblasts is in line with a model for cyclic proton secretion during maturation stage amelogenesis. PMID:18042363

  4. Transformation of AeIn4 Indides (Ae = Ba, Sr) into an AeAu2In2 Structure Type Through Gold Substitution

    SciTech Connect

    Dai, Jing-Cao; Corbett, John D.

    2007-04-17

    The title compounds were prepared from the elements by high-temperature solid-state synthesis techniques. X-ray structural analyses shows that BaAu{sub 2}In{sub 2} (1) and SrAu{sub 2}In{sub 2} (2) crystallize in a new orthorhombic structure, Pnma, Z = 4 (a = 8.755(2), 8.530(2) {angstrom}; b = 4.712(1), 4.598(1) {angstrom}; c = 12.368(3), 12.283(4) {angstrom}, respectively). Gold substitutes for 50% of the indium atoms in the tetragonal BaIn{sub 4} and monoclinic SrIn{sub 4} parents to give this new and more flexible orthorhombic structure. The Ae atoms in this structure are contained within chains of hexagonal prisms built of alternating In and Au that have additional augmenting atoms around their waists from further condensation of parallel displaced chains. The driving forces for these structural changes are in part the shorter Au-In distances (2.72 and 2.69 {angstrom}) relative to d(In-In) in the parents, presumably because of relativistic contractions with Au. Generalities about such centered prismatic building blocks and their condensation modes in these and related phases are described. Band structure calculations (EHTB) demonstrate that the two compounds are metallic, which is confirmed by measurements of the resistivity of 1 and the magnetic susceptibilities of both.

  5. CRF01_AE/B/C, a Novel Drug-Resistant HIV-1 Recombinant in Men Who Have Sex with Men in Beijing, China.

    PubMed

    Yan, Jing; Xin, Ruolei; Li, Zheng; Feng, Yi; Lu, Hongyan; Liao, Lingjie; Ruan, Yuhua; Shao, Yiming; Xing, Hui

    2015-07-01

    We report a unique HIV-1 recombinant strain (URF) from an HIV-positive man who has sex with men (MSM) in Beijing, China. This virus genome has insertions and multiple drug-resistant mutations to both nucleoside reverse transcriptase inhibitors (NRTIs) and nonnucleoside reverse transcriptase inhibitors (NNRTIs), as well as a complex intersubtype recombinant structure with 11 breakpoints. Phylogenetic analysis of the near full-length genome (NFLG) shows that this URF is comprised of gene regions originating from three circulating viral strains: CRF01_AE, subtype B, and subtype C. The parental CRF01_AE regions of the recombinant cluster with a previously described cluster 4 sublineage of CRF01_AE. The B regions of the recombinant cluster within the B (United States-European origin) subtype and the three subtype C regions cluster with a strain detected in China in 1998. The detection and characterization of this complex drug-resistant URF indicate an ongoing generation of recombinant strains among MSM, and will help to provide insight into our understanding of the dynamics and complexity of the HIV-1 epidemic in China. PMID:25962473

  6. Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution

    PubMed Central

    Deng, Pingchuan; Wang, Meng; Feng, Kewei; Cui, Licao; Tong, Wei; Song, Weining; Nie, Xiaojun

    2016-01-01

    Microsatellites are an important constituent of plant genome and distributed across entire genome. In this study, genome-wide analysis of microsatellites in 8 Triticeae species and 9 model plants revealed that microsatellite characteristics were similar among the Triticeae species. Furthermore, genome-wide microsatellite markers were designed in wheat and then used to analyze the evolutionary relationship of wheat and other Triticeae species. Results displayed that Aegilops tauschii was found to be the closest species to Triticum aestivum, followed by Triticum urartu, Triticum turgidum and Aegilops speltoides, while Triticum monococcum, Aegilops sharonensis and Hordeum vulgare showed a relatively lower PCR amplification effectivity. Additionally, a significantly higher PCR amplification effectivity was found in chromosomes at the same subgenome than its homoeologous when these markers were subjected to search against different chromosomes in wheat. After a rigorous screening process, a total of 20,666 markers showed high amplification and polymorphic potential in wheat and its relatives, which were integrated with the public available wheat markers and then anchored to the genome of wheat (CS). This study not only provided the useful resource for SSR markers development in Triticeae species, but also shed light on the evolution of polyploid wheat from the perspective of microsatellites. PMID:27561724

  7. Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution.

    PubMed

    Deng, Pingchuan; Wang, Meng; Feng, Kewei; Cui, Licao; Tong, Wei; Song, Weining; Nie, Xiaojun

    2016-01-01

    Microsatellites are an important constituent of plant genome and distributed across entire genome. In this study, genome-wide analysis of microsatellites in 8 Triticeae species and 9 model plants revealed that microsatellite characteristics were similar among the Triticeae species. Furthermore, genome-wide microsatellite markers were designed in wheat and then used to analyze the evolutionary relationship of wheat and other Triticeae species. Results displayed that Aegilops tauschii was found to be the closest species to Triticum aestivum, followed by Triticum urartu, Triticum turgidum and Aegilops speltoides, while Triticum monococcum, Aegilops sharonensis and Hordeum vulgare showed a relatively lower PCR amplification effectivity. Additionally, a significantly higher PCR amplification effectivity was found in chromosomes at the same subgenome than its homoeologous when these markers were subjected to search against different chromosomes in wheat. After a rigorous screening process, a total of 20,666 markers showed high amplification and polymorphic potential in wheat and its relatives, which were integrated with the public available wheat markers and then anchored to the genome of wheat (CS). This study not only provided the useful resource for SSR markers development in Triticeae species, but also shed light on the evolution of polyploid wheat from the perspective of microsatellites. PMID:27561724

  8. The use of the inner zone electron model AE-5 and associated computer programs

    NASA Technical Reports Server (NTRS)

    Teague, M. J.; Vette, J. I.

    1972-01-01

    A users guide to the inner radiation zone electron model AE-5 is introduced. The guide covers a description of the model, the forms in which it is available, directions on how to use the model, and a discussion of its limitations. Computer programs MODEL and ORP are described. These are major programs needed to use the electron models AE-4 and AE-5 and the smoothed proton models.

  9. A high voltage power supply for the AE-C and D low energy electron experiment

    NASA Technical Reports Server (NTRS)

    Gillis, J. A.

    1974-01-01

    A description is given of the electrical and mechanical design and operation of high voltage power supplies for space flight use. The supply was used to generate the spiraltron high voltage for low energy electron experiment on AE-C and D. Two versions of the supply were designed and built; one design is referred to as the low power version (AE-C) and the other as the high power version (AE-D). Performance is discussed under all operating conditions.

  10. NPS alternate techsat satellite, design project for AE-4871

    NASA Technical Reports Server (NTRS)

    1993-01-01

    This project was completed as part of AE-4871, Advanced Spacecraft Design. The intent of the course is to provide experience in the design of all the major components in a spacecraft system. Team members were given responsibility for the design of one of the six primary subsystems: power, structures, propulsion, attitude control, telemetry, tracking and control (TT&C), and thermal control. In addition, a single member worked on configuration control, launch vehicle integration, and a spacecraft test plan. Given an eleven week time constraint, a preliminary design of each subsystem was completed. Where possible, possible component selections were also made. Assistance for this project came principally from the Naval Research Laboratory's Spacecraft Technology Branch. Specific information on components was solicited from representatives in industry. The design project centers on a general purpose satellite bus that is currently being sought by the Strategic Defense Initiative.

  11. The Herbig Ae Star HD 163296 in X-Rays

    NASA Technical Reports Server (NTRS)

    Swartz, Douglas A.; Drake, Jeremy J.; Elsner, Ronald F.; Ghosh, Kajal K.; Grady, Carol A.; Wassell, Edward

    2004-01-01

    Chandra X-ray imaging spectroscopy of the nearby Herbig Ae star HD 163296 at 100 AU angular resolution is reported. A point-like, soft (kT approximately 0.5 approximately kev), emission-line source is detected at the location of the star with an X-ray luminosity of 4.0e29 erg/s. In addition, faint emission along the direction of a previously-detected Ly-alpha-emitting jet and Herbig-Haro outflow may be present. The relatively low luminosity, lack of a hard spectral component, and absence of strong X-ray variability in HD 163296 can be explained as originating from optically-thin shock-heated gas accreting onto the stellar surface along magnetic field lines. This would require a (dipole) magnetic field strength at the surface of HD 163296 of at least approximately 100 approximately G and perhaps as high as several kG.

  12. Effects of Auger electron elastic scattering in quantitative AES

    NASA Astrophysics Data System (ADS)

    Jablonski, Aleksander

    1987-09-01

    The Monte Carlo algorithm was developed for simulating the trajectories of electrons elastically scattered in the solid. The distribution of scattering angles was determined using the partial wave expansion method. This algorithm was used to establish the influence of Auger electron elastic collisions on the results of quantitative AES analysis. The calculations were performed for the most pronounced KLL, L 3 MM and M 5NN Auger transitions. It turned out that due to the elastic collisions the Auger electron signal is decreased by up to 10%. The corresponding decreased of the escape depth of Auger electrons reaches 30% as compared with the value derived from the inelastic mean free path. The values of the inelastic mean free path resulting from the overalyer method may be strongly affected by elastic scattering of Auger electrons.

  13. Report on the Development of the Advanced Encryption Standard (AES).

    PubMed

    Nechvatal, J; Barker, E; Bassham, L; Burr, W; Dworkin, M; Foti, J; Roback, E

    2001-01-01

    In 1997, the National Institute of Standards and Technology (NIST) initiated a process to select a symmetric-key encryption algorithm to be used to protect sensitive (unclassified) Federal information in furtherance of NIST's statutory responsibilities. In 1998, NIST announced the acceptance of 15 candidate algorithms and requested the assistance of the cryptographic research community in analyzing the candidates. This analysis included an initial examination of the security and efficiency characteristics for each algorithm. NIST reviewed the results of this preliminary research and selected MARS, RC™, Rijndael, Serpent and Twofish as finalists. Having reviewed further public analysis of the finalists, NIST has decided to propose Rijndael as the Advanced Encryption Standard (AES). The research results and rationale for this selection are documented in this report. PMID:27500035

  14. Optical Mass Flow Diagnostics in Herbig Ae/Be Stars

    NASA Astrophysics Data System (ADS)

    Cauley, P. Wilson; Johns-Krull, Christopher M.

    2015-09-01

    We examine a broad range of mass flow diagnostics in a large sample of Herbig Ae/Be stars (HAEBES) using high resolution optical spectra. The Hβ and He i 5876 Å lines show the highest incidence of P Cygni (30%) and inverse P Cygni (14%) morphologies, respectively. The Fe ii 4924 Å line also shows a large incidence of P Cygni profiles (11%). We find support for many of the conclusions reached in a study based on the analysis of the He i λ10830 line in a large sample of HAEBES. Namely, HAEBES exhibit smaller fractions of both blueshifted absorption (i.e., mass outflow) and redshifted absorption (i.e., mass infall or accretion) than their lower mass cousins, the classical T Tauri stars (CTTSs). In particular, the optical data supports the conclusion that HAEBES displaying redshifted absorption, in general, show maximum redshifted absorption velocities that are smaller fractions of their stellar escape velocities than is found for CTTSs. This suggests that HAEBE accretion flows are originating deeper in the gravitational potentials of their stars than in CTTS systems. In addition, we find a lack of inner disk wind signatures in the blueshifted absorption objects; only stellar wind signatures are clearly observed. These findings, along with the lack of detected magnetic fields around HAEBES, support the idea that large magnetospheres are not prevalent around HAEBES and that accretion flows are instead mediated by significantly smaller magnetospheres with relatively smaller truncation radii (e.g., 1-2 R*). Redshifted absorption is much more common around Herbig Ae stars than Be stars, suggesting that Herbig Be stars may accrete via a boundary layer rather than along magnetic field lines.

  15. A possible scenario of the flaring activity in AE Aqr

    NASA Astrophysics Data System (ADS)

    Isakova, P. B.; Zhilkin, A. G.; Bisikalo, D. V.; Ikhsanov, N. R.

    2016-02-01

    The flow structure in magnetic cataclysmic variables with strong magnetic field and fast rotation of the white dwarf was investigated. We model the AE Aqr system as a representative observational object whose spin period of the white dwarf is about 1000 times shorter than the orbital period of the system. Observations show that in spite of the fast rotation some part of the material from the inner Lagrangian point is present in the Roche lobe of the white dwarf. We analyze the possible physical mechanisms that can lead to the less effective angular momentum transfer from the rotating magnetosphere to the inflowing material. Among these mechanisms are the ambipolar diffusion, the pressure of the magneto-dipole radiation, the relativistic retard of magnetic field lines and the incomplete penetration of the magnetic field to plasma. Results of our analysis show that the last mechanism is the most effective. Taking this effect into account we can find the flow structure that is in an agreement with observations. The unique flaring activity is the most prominent property of the AE Aqr system. In this system, the active and quiescent phases alternate. The flaring activity may be caused by the transitions between the laminar and turbulent regimes. In the laminar regime, the flow goes around the star and collides with the material flowing from the inner Lagrangian point. As a result the shock occurs which produces the flow turbulence. In the turbulent regime, the magnetosphere pushes the material away from the Roche lobe of the white dwarf and the flow becomes quickly laminar again.

  16. Blindness Caused by Deficiency in AE3 Chloride/Bicarbonate Exchanger

    PubMed Central

    Alvarez, Bernardo V.; Gilmour, Gregory S.; Mema, Silvina C.; Martin, Brent T.; Shull, Gary E.; Casey, Joseph R.; Sauvé, Yves

    2007-01-01

    Background Vision is initiated by phototransduction in the outer retina by photoreceptors, whose high metabolic rate generates large CO2 loads. Inner retina cells then process the visual signal and CO2. The anion exchanger 3 gene (AE3/Slc4a3) encodes full-length AE3 (AE3fl) and cardiac AE3 (AE3c) isoforms, catalyzing plasma membrane Cl−/HCO3− exchange in Müller (AE3fl) and horizontal (AE3c) cells. AE3 thus maintains acid-balance by removing photoreceptor-generated CO2 waste. Methodology/Principal Findings We report that Slc4a3−/− null mice have inner retina defects (electroretinogram b-wave reduction, optic nerve and retinal vessel anomalies). These pathologic features are common to most human vitreoretinal degenerations. Immunobloting analysis revealed that Na+/HCO3− co-transporter (NBC1), and carbonic anhydrase II and CAXIV, protein expression were elevated in Slc4a3−/− mouse retinas, suggesting compensation for loss of AE3. TUNEL staining showed increased numbers of apoptotic nuclei from 4–6 months of age, in Slc4a3−/− mice, indicating late onset photoreceptor death. Conclusions/Significance Identification of Slc4a3 as underlying a previously unrecognized cause of blindness suggests this gene as a new candidate for a subset of hereditary vitreoretinal retinal degeneration. PMID:17786210

  17. Developments in heterobimetallic s-block systems: synthesis and structural survey of molecular M/Ae (M=Li, Na, K, Cs; Ae=Ca, Sr) aryloxo complexes.

    PubMed

    Zuniga, Maria Felisa; Deacon, Glen B; Ruhlandt-Senge, Karin

    2008-06-01

    A series of novel heterobimetallic group 1/strontium and group 1/calcium aryloxo complexes having the composition [MAe(Odpp)3] [Ae=Sr and M=Na (1), K (2, 3), Cs (4); Ae=Ca and M=Na (5), K (6), Cs (7)] or [M2Ae(Odpp)4] [M=Li and Ae=Sr (9), Ca (10)] have been prepared using 2,6-diphenylphenol (HOdpp) as the ligand. Through the use of solid-state direct metalation, these compounds were obtained either directly from the reaction vessel or after workup in toluene. The Lewis base adduct [KCa(Odpp)3(thf)] (8) was obtained by treatment of [KCa(Odpp)3] (6) with tetrahydrofuran (thf). All of the compounds displayed extensive metal-pi-arene interactions, which provide significant stabilization in these reactive species. The thermal stabilities and volatilities of representative heterobimetallic strontium and calcium complexes were investigated using thermogravimetric analysis.

  18. Chandra High-Energy Transmission Grating Spectrum of AE Aquarii

    NASA Astrophysics Data System (ADS)

    Mauche, Christopher W.

    2009-11-01

    The nova-like cataclysmic binary AE Aqr, which is currently understood to be a former supersoft X-ray binary and current magnetic propeller, was observed for over two binary orbits (78 ks) in 2005 August with the High-Energy Transmission Grating (HETG) on board the Chandra X-ray Observatory. The long, uninterrupted Chandra observation provides a wealth of details concerning the X-ray emission of AE Aqr, many of which are new and unique to the HETG. First, the X-ray spectrum is that of an optically thin multi-temperature thermal plasma; the X-ray emission lines are broad, with widths that increase with the line energy from σ ≈ 1 eV (510 km s-1) for O VIII to σ ≈ 5.5 eV (820 km s-1) for Si XIV; the X-ray spectrum is reasonably well fit by a plasma model with a Gaussian emission measure distribution that peaks at log T(K) = 7.16, has a width σ = 0.48, an Fe abundance equal to 0.44 times solar, and other metal (primarily Ne, Mg, and Si) abundances equal to 0.76 times solar; and for a distance d = 100 pc, the total emission measure EM = 8.0 × 1053 cm-3 and the 0.5-10 keV luminosity L X = 1.1 × 1031 erg s-1. Second, based on the f/(i + r) flux ratios of the forbidden (f), intercombination (i), and recombination (r) lines of the Heα triplets of N VI, O VII, and Ne IX measured by Itoh et al. in the XMM-Newton Reflection Grating Spectrometer spectrum and those of O VII, Ne IX, Mg XI, and Si XIII in the Chandra HETG spectrum, either the electron density of the plasma increases with temperature by over three orders of magnitude, from n e ≈ 6 × 1010 cm-3 for N VI [log T(K) ≈ 6] to n e ≈ 1 × 1014 cm-3 for Si XIII [log T(K) ≈ 7], and/or the plasma is significantly affected by photoexcitation. Third, the radial velocity of the X-ray emission lines varies on the white dwarf spin phase, with two oscillations per spin cycle and an amplitude K ≈ 160 km s-1. These results appear to be inconsistent with the recent models of Itoh et al., Ikhsanov, and Venter

  19. CHANDRA HIGH-ENERGY TRANSMISSION GRATING SPECTRUM OF AE AQUARII

    SciTech Connect

    Mauche, Christopher W.

    2009-11-20

    The nova-like cataclysmic binary AE Aqr, which is currently understood to be a former supersoft X-ray binary and current magnetic propeller, was observed for over two binary orbits (78 ks) in 2005 August with the High-Energy Transmission Grating (HETG) on board the Chandra X-ray Observatory. The long, uninterrupted Chandra observation provides a wealth of details concerning the X-ray emission of AE Aqr, many of which are new and unique to the HETG. First, the X-ray spectrum is that of an optically thin multi-temperature thermal plasma; the X-ray emission lines are broad, with widths that increase with the line energy from sigma approx 1 eV (510 km s{sup -1}) for O VIII to sigma approx 5.5 eV (820 km s{sup -1}) for Si XIV; the X-ray spectrum is reasonably well fit by a plasma model with a Gaussian emission measure distribution that peaks at log T(K) = 7.16, has a width sigma = 0.48, an Fe abundance equal to 0.44 times solar, and other metal (primarily Ne, Mg, and Si) abundances equal to 0.76 times solar; and for a distance d = 100 pc, the total emission measure EM = 8.0 x 10{sup 53} cm{sup -3} and the 0.5-10 keV luminosity L{sub X} = 1.1 x 10{sup 31} erg s{sup -1}. Second, based on the f/(i + r) flux ratios of the forbidden (f), intercombination (i), and recombination (r) lines of the Healpha triplets of N VI, O VII, and Ne IX measured by Itoh et al. in the XMM-Newton Reflection Grating Spectrometer spectrum and those of O VII, Ne IX, Mg XI, and Si XIII in the Chandra HETG spectrum, either the electron density of the plasma increases with temperature by over three orders of magnitude, from n {sub e} approx 6 x 10{sup 10} cm{sup -3} for N VI [log T(K) approx 6] to n {sub e} approx 1 x 10{sup 14} cm{sup -3} for Si XIII [log T(K) approx 7], and/or the plasma is significantly affected by photoexcitation. Third, the radial velocity of the X-ray emission lines varies on the white dwarf spin phase, with two oscillations per spin cycle and an amplitude K approx 160 km s

  20. 75 FR 7209 - Airworthiness Directives; Rolls-Royce Corporation (RRC) AE 3007A Series Turbofan Engines

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-18

    ... Directives; Rolls-Royce Corporation (RRC) AE 3007A Series Turbofan Engines AGENCY: Federal Aviation...: The FAA proposes to adopt a new airworthiness directive (AD) for RRC AE 3007A series turbofan engines... (ECIs) or surface wave ultrasonic testing (SWUT) inspections on high-pressure turbine (HPT) stage...

  1. The origin of spelt and free-threshing hexaploid wheat.

    PubMed

    Dvorak, Jan; Deal, Karin R; Luo, Ming-Cheng; You, Frank M; von Borstel, Keith; Dehghani, Hamid

    2012-01-01

    It is widely believed that hexaploid wheat originated via hybridization of hulled tetraploid emmer with Aegilops tauschii (genomes DD) and that the nascent hexaploid was spelt, from which free-threshing wheat evolved by mutations. To reassess the role of spelt in the evolution of Triticum aestivum, 4 disomic substitution lines of Ae. tauschii chromosome 2D in Chinese Spring wheat were developed and one of them was used to map the Tg locus, which controls glume tenacity in Ae. tauschii, relative to simple sequence repeat (SSR) and expressed sequence tag loci on wheat chromosome 2D. The segregation of SSR markers was used to assess the presence of Tg alleles in 11 accessions of spelt, both from Europe and from Asia. Ten of them had an inactive tg allele in the D genome and most had an active Tg allele in the B genome. This is consistent with spelt being derived from free-threshing hexaploid wheat by hybridization of free-threshing wheat with hulled emmer. It is proposed that the tetraploid parent of hexaploid wheat was not hulled emmer but a free-threshing form of tetraploid wheat.

  2. Molecular emission lines in Herbig Ae/Be stars

    NASA Astrophysics Data System (ADS)

    Giannini, T.; Lorenzetti, D.; Tommasi, E.; Nisini, B.; de Benedettini, M.; Barlow, M. J.; Clegg, P. E.; Cohen, M.; Liseau, R.; Molinari, S.; Palla, F.; Pezzuto, S.; Saraceno, P.; Smith, H. A.; Spinoglio, L.; Strafella, F.; White, G. J.

    1999-03-01

    We present the first ISO-LWS observations of the molecular FIR lines in 3 out of a sample of 11 Herbig Ae/Be stars (HAEBE), namely IRAS12496-7650, RCrA and LkHα234. High-J pure rotational CO lines (from Jup = 14 to Jup = 19) have been observed in all the spectra, while two (at 79 μm and 84 μm) and three OH lines (at 71, 79 and 84 μm) have been detected in LkHα234 and RCrA, respectively. For all the sources the molecular emission has been consistently fitted with a Large Velocity Gradient (LVG) model and results as originated in a warm (T >= 200 K) and dense (nH2 >= 105 cm-3) gas. By comparing the observed cooling ratios with models predictions, we find that the FUV radiation is the most probable responsible for line excitation. Shock mechanism contributions can be reasonably ruled out, especially because of the absence in the spectra of any water vapour line, in contrast with the predictions on the molecular emission coming from warm shocked

  3. The (BETA) Pictoris Phenomenon Among Herbig Ae/Be Stars

    NASA Technical Reports Server (NTRS)

    Grady, C. A.; Perez, M. R.; Talavera, A.; Bjorkman, K. S.; deWinter, D.; The, P.-S.; Molster, F. J.; vandenAncker, M. E.; Sitko, M. L.; Morrison, N. D.; Beaver, M. L.; McCollum, B.; Castelaz, M. W.

    1996-01-01

    We present a survey of high dispersion UV and optical spectra of Herbig Ae/Be (HAeBe) and related stars. We find accreting, circumstellar gas over the velocity range +100 to +400 km/s, and absorption profiles similar to those seen toward Beta Pic, in 36% of the 33 HAeBe stars with IUE data as well as in 3 non-emission B stars. We also find evidence of accretion in 7 HAeBe stars with optical data only. Line profile variability appears ubiquitous. As a group, the stars with accreting gas signatures have higher v sin i than the stars with outflowing material, and tend to exhibit large amplitude (greater than or equal to 1(sup m)) optical light variations. All of the program stars with polarimetric variations that are anti-correlated with the optical light, previously interpreted as the signature of a dust disk viewed close to equator-on, also show spectral signatures of accreting gas. These data imply that accretion activity in HAeBe stars is preferentially observed when the line of sight transits the circumstellar dust disk. Our data imply that the spectroscopic signatures of accreting circumstellar material seen in Beta Pic are not unique to that object, but instead are consistent with interpretation of Beta Pic as a comparatively young A star with its associated circumstellar disk.

  4. Universal quantification of elastic scattering effects in AES and XPS

    NASA Astrophysics Data System (ADS)

    Jablonski, Aleksander

    1996-09-01

    Elastic scattering of photoelectrons in a solid can be accounted for in the common formalism of XPS by introducing two correction factors, βeff and Qx. In the case of AES, only one correction factor, QA, is required. As recently shown, relatively simple analytical expressions for the correction factors can be derived from the kinetic Boltzmann equation within the so-called "transport approximation". The corrections are expressed here in terms of the ratio of the transport mean free path (TRMFP) to the inelastic mean free path (IMFP). Since the available data for the TRMFP are rather limited, it was decided to complete an extensive database of these values. They were calculated in the present work for the same elements and energies as in the IMFP tabulation published by Tanuma et al. An attempt has been made to derive a predictive formula providing the ratios of the TRMFP to the IMFP. Consequently, a very simple and accurate algorithm for calculating the correction factors βeff, Qx and QA has been developed. This algorithm can easily be generalized to multicomponent solids. The resulting values of the correction factors were found to compare very well with published values resulting from Monte Carlo calculations.

  5. Remarks on the definition of the backscattering factor in AES

    NASA Astrophysics Data System (ADS)

    Jablonski, Aleksander

    2002-03-01

    It has been shown that the backscattering factor in AES can be defined as an integral of the product of the excitation depth distribution function and the emission depth distribution function. First function describes the number of ionizations as a function of depth while the second function describes the escape probability of Auger electrons created at different depths. The backscattering factor calculated from such definition is found to depend on the Auger electron emission angle. For emission angles up to 40° with respect to surface normal, this dependence is not pronounced. However, influence of the emission angle on the backscattering factor may be substantial at glancing emission angles. Values of the backscattering factor calculated from the proposed algorithm assuming the emission angle equal to 40° differ noticeably from values resulting from the Shimizu expression. The deviation may reach 18% at primary electron energy of 2000 eV. Furthermore, the backscattering factor may become smaller than unity at primary energies close to the ionization energy. This effect has been suggested in earlier studies.

  6. Acoustic emission structural health management systems (AE-SHMS)

    NASA Astrophysics Data System (ADS)

    Finlayson, Richard D.; Friesel, Mark A.; Carlos, Mark F.; Miller, Ronnie K.; Godinez, Valery

    2000-05-01

    Many of today's methods of inspecting structures are very time consuming, labor intensive and in many cases (due to limited access), impractical. In addition, long shutdown times are required to perform the inspections, thus creating tremendous expenses associated with manpower, materials and lost production. With continuing advances in signal processing and communications a significant interest has been shown in developing new diagnostic technologies for monitoring the integrity of structures with known defects, or for detecting new defects, in real time with minimum human involvement. The continued use of aging structures, especially in regard to the airworthiness of aging aircraft, is a major area of concern. Recent developments in both active and passive Acoustic Emission monitoring as an advanced tool for 'Structural Health Management Systems (SHMS),' are illustrated by using two recently developed acoustic emission systems; the Acoustic Emission-Health and Usage Monitoring System (AE-HUMS) helicopter drivetrain health monitoring system, and the Acoustic Emission Flight Instrument System (AEFIS) composite health monitoring system. The data collected with these types of systems is processed with advanced data screening and classification techniques, which are employed to take full advantage of parametric and waveform-based acoustic emission.

  7. Genetic Characterization of a Unique Recombinant Originating from CRF55_01B, CRF01_AE, and CRF07_BC in Shenzhen, China

    PubMed Central

    Zhao, Jin; Sun, Changrong; Chen, Lin; Liu, Yongjian; Zheng, Chenli; Li, Hanping; Li, Tianyi; Bao, Zuoyi; Wang, Xiaolin; Li, Lin

    2015-01-01

    Abstract Multiple subtypes were found to be epidemic in the Shenzhen men who have sex with men (MSM) population, which always predicts the emergence of a unique recombinant. In 2012, CRF55_01B was first reported, which later was proven to have originated in MSM in Shenzhen city. In this study, we reported a unique recombinant form (URF) of HIV-1 identified in a man who has had sex with men in Shenzhen city. The strain showed a genomic schematic map similar to CRF55_01B with subtype C segments inserted in the gag and pol genes. The full-length genome was amplified in two halves with 1-kb overlap regions. The PCR products were cloned and sequenced. A recombination detection program showed that two subtype C fragments and two subtype B fragments were inserted into the CRF01_AE backbone genome in the gag and pol regions. In the phylogenetic tree, the subtype C fragments clustered with CRF07_BC variants and the other segments grouped with CRF55_01B strains except for one segment that clustered with CRF01_AE. Similar breakpoints between our strain and CRF65_cpx were also observed. The data suggested that the URF strain might be the recombinant form of CRF55_01B, CRF01_AE, and CRF07_BC. This is the first report of a third generation of recombination of HIV-1 that originated from CRF55_01B in China. The identification of the URF indicated the severity of the HIV epidemic in Shenzhen MSM and the urgent need for epidemiological surveillance of the new recombination. PMID:25748656

  8. Characterization of the extremely arsenic-resistant Brevibacterium linens strain AE038-8 isolated from contaminated groundwater in Tucumán, Argentina

    USGS Publications Warehouse

    Maizel, Daniela; Blum, Jodi S.; Ferrero, Marcela A.; Utturkar, Sagar M.; Brown, Steven D.; Rosen, Barry P.; Oremland, Ronald S.

    2015-01-01

    Brevibacterium linens AE038-8, isolated from As-contaminated groundwater in Tucumán (Argentina), is highly resistant to arsenic oxyanions, being able to tolerate up to 1 M As(V) and 75 mM As(III) in a complex medium. Strain AE038-8 was also able to reduce As(V) to As(III) when grown in complex medium but paradoxically it could not do this in a defined minimal medium with sodium acetate and ammonium sulfate as carbon and nitrogen sources, respectively. No oxidation of As(III) to As(V) was observed under any conditions. Three copies of the ars operon comprising arsenic resistance genes were found on B. linens AE038-8 genome. In addition to the well known arsC, ACR3 andarsR, two copies of the arsO gene of unknown function were detected.

  9. Ribosomal protein L7Ae is a subunit of archaeal RNase P.

    PubMed

    Cho, I-Ming; Lai, Lien B; Susanti, Dwi; Mukhopadhyay, Biswarup; Gopalan, Venkat

    2010-08-17

    To the mounting evidence of nonribosomal functions for ribosomal proteins, we now add L7Ae as a subunit of archaeal RNase P, a ribonucleoprotein (RNP) that catalyzes 5'-maturation of precursor tRNAs (pre-tRNAs). We first demonstrate that L7Ae coelutes with partially purified Methanococcus maripaludis (Mma) RNase P activity. After establishing in vitro reconstitution of the single RNA with four previously known protein subunits (POP5, RPP21, RPP29, and RPP30), we show that addition of L7Ae to this RNase P complex increases the optimal reaction temperature and k(cat)/K(m) (by approximately 360-fold) for pre-tRNA cleavage to those observed with partially purified native Mma RNase P. We identify in the Mma RNase P RNA a putative kink-turn (K-turn), the structural motif recognized by L7Ae. The large stimulatory effect of Mma L7Ae on RNase P activity decreases to Ae shown to be essential for K-turn binding. The critical, multifunctional role of archaeal L7Ae in RNPs acting in tRNA processing (RNase P), RNA modification (H/ACA, C/D snoRNPs), and translation (ribosomes), especially by employing the same RNA-recognition surface, suggests coevolution of various translation-related functions, presumably to facilitate their coordinate regulation. PMID:20675586

  10. Application of Normal Mode Expansion to AE Waves in Finite Plates

    NASA Technical Reports Server (NTRS)

    Gorman, M. R.; Prosser, W. H.

    1997-01-01

    Breckenridge et al. (1975), Hsu (1985) and Pao (1978) adapted approaches from seismology to calculate the response at the surface of an infinite half-space and an infinite plate. These approaches have found use in calibrating acoustic emission (AE) transducers. However, it is difficult to extend this theoretical approach to AE testing of practical structures. Weaver and Pao (1982) considered a normal mode solution to the Lamb equations. Hutchinson (1983) pointed out the potential relevance of Mindlin's plate theory (1951) to AE. Pao (1982) reviewed Medick s (1961) classical plate theory for a point source, but rejected it as useful for AE and no one seems to have investigated its relevance to AE any further. Herein, a normal mode solution to the classical plate bending equation was investigated for its applicability to AE. The same source-time function chosen by Weaver and Pao is considered. However, arbitrary source and receiver positions are chosen relative to the boundaries of the plate. This is another advantage of the plate theory treatment in addition to its simplicity. The source does not have to be at the center of the plate as in the axisymmetric treatment. The plate is allowed to remain finite and reflections are predicted. The importance of this theory to AE is that it can handle finite plates, realistic boundary conditions, and can be extended to composite materials.

  11. Photometric variability of the Herbig Ae star HD 37806

    NASA Astrophysics Data System (ADS)

    Rucinski, S. M.; Zwintz, K.; Hareter, M.; Pojmański, G.; Kuschnig, R.; Matthews, J. M.; Guenther, D. B.; Moffat, A. F. J.; Sasselov, D.; Weiss, W. W.

    2010-11-01

    Context. The more massive counterparts of T Tauri stars, the Herbig Ae/Be stars, are known to vary in a complex way with no variability mechanism clearly identified. Aims: We attempt to characterize the optical variability of HD 37806 (MWC 120) on time scales ranging between minutes and several years. Methods: A continuous, one-minute resolution, 21 day-long sequence of MOST (Microvariability & Oscillations of STars) satellite observations has been analyzed using wavelet, scalegram and dispersion analysis tools. The MOST data have been augmented by sparse observations over 9 seasons from ASAS (All Sky Automated Survey), by previously non-analyzed ESO (European Southern Observatory) data partly covering 3 seasons and by archival measurements dating back half a century ago. Results: Mutually superimposed flares or accretion instabilities grow in size from about 0.0003 of the mean flux on a time scale of minutes to a peak-to-peak range of <0.05 on a time scale of a few years. The resulting variability has properties of stochastic “red” noise, whose self-similar characteristics are very similar to those observed in cataclysmic binary stars, but with much longer characteristic time scales of hours to days (rather than minutes) and with amplitudes which appear to cease growing in size on time scales of tens of years. In addition to chaotic brightness variations combined with stochastic noise, the MOST data show a weakly defined cyclic signal with a period of about 1.5 days, which may correspond to the rotation of the star. Based on data from the MOST satellite, a Canadian Space Agency mission jointly operated by Dynacon Inc., the University of Toronto Institute for Aerospace Studies and the University of British Columbia, with the assistance of the University of Vienna, and on data from the All Sky Automated Survey (ASAS) conducted by the Warsaw University Observatory, Warsaw, Poland at the Las Campanas Observatory, Chile.

  12. Monitoring Induced Seismicity with AE Sensors : The Influence of Unknown Calibration Functions

    NASA Astrophysics Data System (ADS)

    Plenkers, Katrin; Kwiatek, Grzegorz; Krüger, Frank

    2013-04-01

    We study the effect that an uncalibrated acoustic-emission (AE) sensor has on amplitude and magnitude using data of the JAGUARS project. The JAGUARS project recorded mining-induced seismicity in Mponeng Gold mine in Carletonville, South Africa in the frequency range 1 kHz < f < 180 kHz combining AE-sensors and accelerometers. Advanced monitoring of induced seismicity in underground structures sometimes includes today the use of high-frequency (f >> 1 kHz) AE monitoring systems. High-frequency monitoring allows the detection of seismic fractures on the centimeter scale and provides therefore important information about the migration of instabilities in the rock. Whereas the temporal-spatial analysis of seismic events recorded with AE sensors provides stable results, the analysis of source parameters including the estimation of magnitudes remains more challenging, because AE sensors are normally not well calibrated and exploit resonance frequencies to allow for high sensitivity. In our study the AE sensors are first calibrated in the frequency range 1kHz to 17 kHz relative to the well calibrated accelerometer. The calibration is possible due to the close employment of both sensor types, which allows to extract the sensor response (including the coupling effect) using signal deconvolution. We estimate three main resonance frequencies at about 2.5 kHz, 6 kHz and 10 kHz. Furthermore we calculate the directivity effect of the AE-sensor that influences the amplitude of the signal by up to - 15 dB. Second, we calculate the effect of the instrument response on the amplitude and the calculation of magnitude by studying synthetic data. We show the significant uncertainty that is introduced owing to the AE sensor response and conclude that source parameters often have high uncertainties and are not reliable for statistcal analsis if the instrument response of the recording AE sensor is not known.

  13. Global temperature constraints on Aedes aegypti and Ae. albopictus persistence and competence for dengue virus transmission

    PubMed Central

    2014-01-01

    Background Dengue is a disease that has undergone significant expansion over the past hundred years. Understanding what factors limit the distribution of transmission can be used to predict current and future limits to further dengue expansion. While not the only factor, temperature plays an important role in defining these limits. Previous attempts to analyse the effect of temperature on the geographic distribution of dengue have not considered its dynamic intra-annual and diurnal change and its cumulative effects on mosquito and virus populations. Methods Here we expand an existing modelling framework with new temperature-based relationships to model an index proportional to the basic reproductive number of the dengue virus. This model framework is combined with high spatial and temporal resolution global temperature data to model the effects of temperature on Aedes aegypti and Ae. albopictus persistence and competence for dengue virus transmission. Results Our model predicted areas where temperature is not expected to permit transmission and/or Aedes persistence throughout the year. By reanalysing existing experimental data our analysis indicates that Ae. albopictus, often considered a minor vector of dengue, has comparable rates of virus dissemination to its primary vector, Ae. aegypti, and when the longer lifespan of Ae. albopictus is considered its competence for dengue virus transmission far exceeds that of Ae. aegypti. Conclusions These results can be used to analyse the effects of temperature and other contributing factors on the expansion of dengue or its Aedes vectors. Our finding that Ae. albopictus has a greater capacity for dengue transmission than Ae. aegypti is contrary to current explanations for the comparative rarity of dengue transmission in established Ae. albopictus populations. This suggests that the limited capacity of Ae. albopictus to transmit DENV is more dependent on its ecology than vector competence. The recommendations, which we

  14. Automated Estimating System (AES): Version 6.1: User`s manual. Revision 6

    SciTech Connect

    Schwarz, R.K.; Holder, D.A.

    1996-03-01

    This document describes Version 6.1 of the Automated Estimating System (AES), a personal computer-based software package. The AES is designed to aid in the creation, updating, and reporting of project cost estimates for the Estimating and Scheduling Engineering Department of Central Engineering Services of Lockheed Martin Energy Systems,Inc. AES provides formatted input screens to guide the user through the estimate creation/update process and provides several standardized reports that allow cost to be sorted and summarized in many different formats and at several levels of aggregation.

  15. Application of TURBO-AE to Flutter Prediction: Aeroelastic Code Development

    NASA Technical Reports Server (NTRS)

    Hoyniak, Daniel; Simons, Todd A.; Stefko, George (Technical Monitor)

    2001-01-01

    The TURBO-AE program has been evaluated by comparing the obtained results to cascade rig data and to prediction made from various in-house programs. A high-speed fan cascade, a turbine cascade, a turbine cascade and a fan geometry that shower flutter in torsion mode were analyzed. The steady predictions for the high-speed fan cascade showed the TURBO-AE predictions to match in-house codes. However, the predictions did not match the measured blade surface data. Other researchers also reported similar disagreement with these data set. Unsteady runs for the fan configuration were not successful using TURBO-AE .

  16. Automated Estimating System (AES) version 6.0 - user`s manual. Revision 5

    SciTech Connect

    Holder, D.A.; Schwarz, R.K.

    1994-06-01

    This document describes Version 6.0 of the Automated Estimating System (AES), a personal computer-based software package. The AES is designed to aid in the creation, updating, and reporting of project cost estimates for the Estimating and Scheduling Engineering Department of Central Engineering Services of Martin Marietta Energy Systems, Inc. AES provides formatted input screens to guide the user through the estimate creation/update process and provides several standardized reports that allow cost to be sorted and summarized in many different formats and at several levels of aggregation.

  17. Genetic diversity of Greek Aegilops species using different types of nuclear genome markers.

    PubMed

    Thomas, Konstantinos G; Bebeli, Penelope J

    2010-09-01

    Random Amplified Polymorphic DNA (RAPD) and Inter-Simple Sequence Repeat (ISSR) analyses were used to evaluate genetic variability and relationships of Greek Aegilops species. Thirty-eight accessions of seven Greek Aegilops species [Ae. triuncialis (genome UC), Ae. neglecta (UM), Ae. biuncialis (UM), Ae. caudata (C), Ae. comosa (M), Ae. geniculata (MU) and Ae. umbellulata (U)] as well as Triticum accessions were studied. Nineteen RAPD and ten ISSR primers yielded 344 and 170 polymorphic bands, respectively, that were used for the construction of dendrograms. Regardless of the similarity coefficient and marker type used, UPGMA placed 38 Aegilops accessions into one branch while the other branch consisted of wheat species. Within the Aegilops cluster, subgroups were identified that included species that shared the same genome or belonged to the same botanical section. Within the Triticum cluster, two robust subgroups were formed, one including diploid wheat and another including polyploid wheat. In conclusion, results showed that there is genetic diversity in the Greek Aegilops species studied, and clustering based on genetic similarities was in agreement with botanical classifications.

  18. Genome-Wide Association Mapping of Anther Extrusion in Hexaploid Spring Wheat

    PubMed Central

    Muqaddasi, Quddoos H.; Lohwasser, Ulrike; Nagel, Manuela; Börner, Andreas; Pillen, Klaus; Röder, Marion S.

    2016-01-01

    In a number of crop species hybrids are able to outperform line varieties. The anthers of the autogamous bread wheat plant are normally extruded post anthesis, a trait which is unfavourable for the production of F1 hybrid grain. Higher anther extrusion (AE) promotes cross fertilization for more efficient hybrid seed production. Therefore, this study aimed at the genetic dissection of AE by genome wide association studies (GWAS) and determination of the main effect QTL. We applied GWAS approach to identify DArT markers potentially linked to AE to unfold its genetic basis in a panel of spring wheat accessions. Phenotypic data were collected for three years and best linear unbiased estimate (BLUE) values were calculated across all years. The extent of the AE correlation between growing years and BLUE values ranged from r = +0.56 (2013 vs 2015) to 0.91 (2014 vs BLUE values). The broad sense heritability was 0.84 across all years. Six accessions displayed stable AE >80% across all the years. Genotyping data included 2,575 DArT markers (with minimum of 0.05 minor allele frequency applied). AE was influenced both by genotype and by the growing environment. In all, 131 significant marker trait associations (MTAs) (|log10 (P)| >FDR) were established for AE. AE behaved as a quantitative trait, with five consistently significant markers (significant across at least two years with a significant BLUE value) contributing a minor to modest proportion (4.29% to 8.61%) of the phenotypic variance and affecting the trait either positively or negatively. For this reason, there is potential for breeding for improved AE by gene pyramiding. The consistently significant markers linked to AE could be helpful for marker assisted selection to transfer AE to high yielding varieties allowing to promote the exploitation of hybrid-heterosis in the key crop wheat. PMID:27191600

  19. 12. PWD Drawing 10,0005(463AE1)(1936), 'Electrical Lighting and Power' Mare ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    12. PWD Drawing 10,000-5(463A-E-1)(1936), 'Electrical Lighting and Power' - Mare Island Naval Shipyard, Battery Test Office & Storage Facility, California Avenue & E Street, Vallejo, Solano County, CA

  20. Time studies in A&E departments--a useful tool for management.

    PubMed

    Aharonson-Daniel, L; Fung, H; Hedley, A J

    1996-01-01

    A time and motion study was conducted in an accident and emergency (A&E) department in a Hong Kong Government hospital in order to suggest solutions for severe queuing problems found in A&E. The study provided useful information about the patterns of arrival and service; the throughput; and the factors that influence the length of the queue at the A&E department. Plans for building a computerized simulation model were dropped as new intelligence generated by the study enabled problem solving using simple statistical analysis and common sense. Demonstrates some potential benefits for management in applying operations research methods in busy clinical working environments. The implementation of the recommendations made by this study successfully eliminated queues in A&E.

  1. Propagation of Flexural Mode AE Signals in GR/EP Composite Plates

    NASA Technical Reports Server (NTRS)

    Prosser, W. H.; Gorman, M. R.

    1992-01-01

    It has been documented that AE signals propagate in thin plates as extensional and flexural plate modes. This was demonstrated using simulated AE sources (pencil lead breaks) by Gorman on thin aluminum and gr/ep composite plates and by Gorman and Prosser on thin aluminum plates. A typical signal from a pencil lead break source which identifies these two modes is shown. AE signals from transverse matrix cracking sources in gr/ep composite plates were also shown to propagate as plate modes by Gorman and Ziola. Smith showed that crack growth events in thin aluminum plates under spectrum fatigue loading produced signals that propagated as plate modes. Additionally, Prosser et al. showed that AE signals propagated as plate modes in a thin walled composite tube.

  2. Spectral Characteristics of Continuous Acoustic Emission (AE) Data from Laboratory Rock Deformation Experiments

    NASA Astrophysics Data System (ADS)

    Flynn, J. William; Goodfellow, Sebastian; Reyes-Montes, Juan; Nasseri, Farzine; Young, R. Paul

    2016-04-01

    Continuous acoustic emission (AE) data recorded during rock deformation tests facilitates the monitoring of fracture initiation and propagation due to applied stress changes. Changes in the frequency and energy content of AE waveforms have been previously observed and were associated with microcrack coalescence and the induction or mobilisation of large fractures which are naturally associated with larger amplitude AE events and lower-frequency components. The shift from high to low dominant frequency components during the late stages of the deformation experiment, as the rate of AE events increases and the sample approaches failure, indicates a transition from the micro-cracking to macro-cracking regime, where large cracks generated result in material failure. The objective of this study is to extract information on the fracturing process from the acoustic records around sample failure, where the fast occurrence of AE events does not allow for identification of individual AE events and phase arrivals. Standard AE event processing techniques are not suitable for extracting this information at these stages. Instead the observed changes in the frequency content of the continuous record can be used to characterise and investigate the fracture process at the stage of microcrack coalescence and sample failure. To analyse and characterise these changes, a detailed non-linear and non-stationary time-frequency analysis of the continuous waveform data is required. Empirical Mode Decomposition (EMD) and Hilbert Spectral Analysis (HSA) are two of the techniques used in this paper to analyse the acoustic records which provide a high-resolution temporal frequency distribution of the data. In this paper we present the results from our analysis of continuous AE data recorded during a laboratory triaxial deformation experiment using the combined EMD and HSA method.

  3. AE Geomagnetic Index Predictability for High Speed Solar Wind Streams: A Wavelet Decomposition Technique

    NASA Technical Reports Server (NTRS)

    Guarnieri, Fernando L.; Tsurutani, Bruce T.; Hajra, Rajkumar; Echer, Ezequiel; Gonzalez, Walter D.; Mannucci, Anthony J.

    2014-01-01

    High speed solar wind streams cause geomagnetic activity at Earth. In this study we have applied a wavelet interactive filtering and reconstruction technique on the solar wind magnetic field components and AE index series to allowed us to investigate the relationship between the two. The IMF Bz component was found as the most significant solar wind parameter responsible by the control of the AE activity. Assuming magnetic reconnection associated to southward directed Bz is the main mechanism transferring energy into the magnetosphere, we adjust parameters to forecast the AE index. The adjusted routine is able to forecast AE, based only on the Bz measured at the L1 Lagrangian point. This gives a prediction approximately 30-70 minutes in advance of the actual geomagnetic activity. The correlation coefficient between the observed AE data and the forecasted series reached values higher than 0.90. In some cases the forecast reproduced particularities observed in the signal very well.The high correlation values observed and the high efficacy of the forecasting can be taken as a confirmation that reconnection is the main physical mechanism responsible for the energy transfer during HILDCAAs. The study also shows that the IMF Bz component low frequencies are most important for AE prediction.

  4. Transmembrane protein 139 (TMEM139) interacts with human kidney isoform of anion exchanger 1 (kAE1).

    PubMed

    Nuiplot, Nalin-On; Junking, Mutita; Duangtum, Natapol; Khunchai, Sasiprapa; Sawasdee, Nunghathai; Yenchitsomanus, Pa-Thai; Akkarapatumwong, Varaporn

    2015-08-01

    Human kidney anion exchanger 1 (kAE1) mediates Cl(-)/HCO3(-) exchanges at the basolateral membrane of the acid-secreting α-intercalated cells. Mutations in SLC4A1 gene encoding kAE1 are associated with distal renal tubular acidosis (dRTA). Several studies have shown that impaired trafficking of the mutant kAE1 is an important molecular mechanism underlying the pathogenesis of dRTA. Proteins involved in kAE1 trafficking were identified but the mechanism resulting in dRTA remained unclear. Thus, this study attempted to search for additional proteins interacting with C-terminal of kAE1 (Ct-kAE1) and involved in kAE1 trafficking to cell membrane. Transmembrane protein 139 (TMEM139) was identified as a protein interacting with Ct-kAE1 by yeast two-hybrid screening. The interaction between kAE1 and TMEM139 was confirmed by affinity co-purification, co-immunoprecipitation (co-IP) and yellow fluorescent protein (YFP)-based protein fragment complementation assay (PCA). In addition, flow cytometry results showed that suppression of endogenous TMEM139 by small interfering RNA (siRNA) and over-expression of TMEM139 in HEK293T cells could reduce and increase membrane localization of kAE1, respectively. The presented data demonstrate that TMEM139 interacts with kAE1 and promotes its intracellular trafficking. PMID:26049106

  5. Novel AE1 mutations in recessive distal renal tubular acidosis. Loss-of-function is rescued by glycophorin A.

    PubMed

    Tanphaichitr, V S; Sumboonnanonda, A; Ideguchi, H; Shayakul, C; Brugnara, C; Takao, M; Veerakul, G; Alper, S L

    1998-12-15

    The AE1 gene encodes band 3 Cl-/HCO3- exchangers that are expressed both in the erythrocyte and in the acid-secreting, type A intercalated cells of the kidney. Kidney AE1 contributes to urinary acidification by providing the major exit route for HCO3- across the basolateral membrane. Several AE1 mutations cosegregate with dominantly transmitted nonsyndromic renal tubular acidosis (dRTA). However, the modest degree of in vitro hypofunction exhibited by these dRTA-associated mutations fails to explain the disease phenotype in light of the normal urinary acidification associated with the complete loss-of-function exhibited by AE1 mutations linked to dominant spherocytosis. We report here novel AE1 mutations linked to a recessive syndrome of dRTA and hemolytic anemia in which red cell anion transport is normal. Both affected individuals were triply homozygous for two benign mutations M31T and K56E and for the loss-of-function mutation, G701D. AE1 G701D loss-of-function was accompanied by impaired trafficking to the Xenopus oocyte surface. Coexpression with AE1 G701D of the erythroid AE1 chaperonin, glycophorin A, rescued both AE1-mediated Cl- transport and AE1 surface expression in oocytes. The genetic and functional data both suggest that the homozygous AE1 G701D mutation causes recessively transmitted dRTA in this kindred with apparently normal erythroid anion transport. PMID:9854053

  6. Synthesis, Crystal and Electronic Structures of the Pnictides AE3TrPn3 (AE = Sr, Ba; Tr = Al, Ga; Pn = P, As)

    DOE PAGES

    Stoyko, Stanislav; Voss, Leonard; He, Hua; Bobev, Svilen

    2015-09-24

    New ternary arsenides AE3TrAs3 (AE = Sr, Ba; Tr = Al, Ga) and their phosphide analogs Sr3GaP3 and Ba3AlP3 have been prepared by reactions of the respective elements at high temperatures. Single-crystal X-ray diffraction studies reveal that Sr3AlAs3 and Ba3AlAs3 adopt the Ba3AlSb3-type structure (Pearson symbol oC56, space group Cmce, Z = 8). This structure is also realized for Sr3GaP3 and Ba3AlP3. Likewise, the compounds Sr3GaAs3 and Ba3GaAs3 crystallize with the Ba3GaSb3-type structure (Pearson symbol oP56, space group Pnma, Z = 8). Both structures are made up of isolated pairs of edge-shared AlPn4 and GaPn4 tetrahedra (Pn = pnictogen, i.e.,more » P or As), separated by the alkaline-earth Sr2+ and Ba2+ cations. In both cases, there are no homoatomic bonds, hence, regardless of the slightly different atomic arrangements, both structures can be rationalized as valence-precise [AE2+]3[Tr3+][Pn3-]3, or rather [AE2+]6[Tr2Pn6]12-, i.e., as Zintl phases.« less

  7. Locating the Accretion Footprint on a Herbig Ae Star: MWC 480

    NASA Technical Reports Server (NTRS)

    Grady, C. A.; Hamaguchi, K.; Schneider, G.; Stecklum, B.; Woodgate, B. E.; McCleary, J. E.; Williger, G. M.; Sitko, M. L.; Menard, F.; Henning, Th.; Brittain, S.; Troutmann, M.; Donehew, B.; Hines, D.; Wisniewski, J. P.; Lynch, D. K.; Russell, R. W.; Rudy, R. J.; Day, A. M.; Shenoy, A.; Wilner, D.; Silverston, M.; Bouret, J.-C.; Clampin, M.; Petre, R.

    2011-01-01

    Accretion is a fundamental process which establishes the dynamics of the protoplanetary disk and the final properties of the forming star. In solar-type stars, the star-disk coupling is determined by the magnetic field structure, which is responsible for funneling material from the disk midplane to higher latitudes on the star. Here, we use pan-chromatic data for the Herbig Ae star MWC 480 to address whether similar processes occur in intermediate-mass stars. MWC 480 has X-ray emission typical of actively accreting Herbig Ae stars, but with 5-9 x more photoelectric absorption than expected from optical and FUV data. We consider 3 sources for the absorption: the disk absorption in a wind or jet, and accretion. While we detect the disk in scattered light in are-analysis of archival HST data. the data are consistent with grazing illumination of the dust disk. We find that MWC 480's disk is stratified, geometrically thin, and is not responsible for the observed photoelectric absorption. MWC 480 drives a bipolar jet, but with a mass loss rate which is low compared to other Herbig Ae stars, where the outflow is more favorably oriented and enhanced photoelectric absorption is not seen. This excludes a jet or wind origin for the enhanced photoelectric absorption. We compare MWC 480's 0 VI emission with other Herbig Ae stars. The distribution of the emission in inclination, and lack of a correlation of profile shape and system inclination excludes equatorially-confined accretion for the FUSE Herbig Ae stars. The photoelectric absorption data further suggest that the accretion footprint on MWC 480 and other Herbig Ae stars is located at high temperate, rather than polar, latitudes. These findings support the presence of funneled accretion in MWC 480 and Herbig Ae stars, strengthening the parallel to T Tauri stars.

  8. Crustal stress, seismicity, acoustic emission (AE), and tectonics: the Kefallinì;a (Greece) case study

    NASA Astrophysics Data System (ADS)

    Gregori, G. P.; Poscolieri, M.; Paparo, G.; Ventrice, G.; de Simone, S.; Rafanelli, C.

    2009-04-01

    New inferences - confirming previous results (see references)- are presented dealing with a few years Acoustic Emission (AE) records collected at Kefallinìa (Ionian Islands, Greece). A physical distinction between HF (high frequency) vs. LF (low frequency) AE is required. Step-wise changes of the AE underground conductivity are evidenced, and can be suitably handled. "Smooth" results concern (i) the annual variation, (ii) some long-lasting stress "solitons" crossing through the area, and (iii) tidal effects. In particular, every AE station can be operated like a monitoring station both for Earth's tides and for the free oscillations of the Earth. In addition, Kefallinìa exhibits a much peculiar groundwater circulation, in which conduit flow is dominant, that originates a specific (and unique) AE effect. By means of AE time-series analysis, "extreme" or "catastrophic" events can be also monitored and possibly related to relevant tectonic occurrences (either earthquakes, or maybe other occasional phenomena). They can be investigated, and have a regional - rather than local - character. Therefore, every interpretation based on a single station record - being biased by some arbitrariness - can only result indicative. A standardized procedure and software is proposed for routine AE data handling and analysis. References.: Lagios et al., 2004. In Proc. SCI 2004 (The 8th World Multi-Conference on Systemics, Cybernetics and Informatic), Orlando, Florida, July 1004, 6 pp. Poscolieri et al., 2006. In. G. Cello and B. D. Malamud, (eds), 2006. Geol. Soc. London, Special Publ., 261, 63-78. Poscolieri et al., 2006a. Nat. Hazards Earth Syst. Sci., 6, 961-971.

  9. LOCATING THE ACCRETION FOOTPRINT ON A HERBIG Ae STAR: MWC 480

    SciTech Connect

    Grady, C. A.; Hamaguchi, K.; Stecklum, B.; Woodgate, B. E.; McCleary, J. E.; Williger, G. M.; Sitko, M. L.; Hines, D.; Menard, F.; Brittain, S.; Troutmann, M.; Donehew, B.; Wisniewski, J. P.; Lynch, D. K.; Russell, R. W.; Rudy, R. J.; Day, A. N.; Shenoy, A.

    2010-08-20

    Accretion is a fundamental process which establishes the dynamics of the protoplanetary disk and the final properties of the forming star. In solar-type stars, the star-disk coupling is determined by the magnetic field structure, which is responsible for funneling material from the disk midplane to higher latitudes on the star. Here, we use pan-chromatic data for the Herbig Ae star MWC 480 to address whether similar processes occur in intermediate-mass stars. MWC 480 has X-ray emission typical of actively accreting Herbig Ae stars, but with {approx}10x more photoelectric absorption than expected from optical and FUV data. We consider three sources for the absorption: the disk, absorption in a wind or jet, and accretion. While we detect the disk in scattered light in a re-analysis of archival Hubble Space Telescope data, the data are consistent with grazing illumination of the dust disk. We find that MWC 480's disk is stratified, geometrically thin, and is not responsible for the observed photoelectric absorption. MWC 480 drives a bipolar jet, but with a mass-loss rate that is low compared to other Herbig Ae stars, where the outflow is more favorably oriented and enhanced photoelectric absorption is not seen. This excludes a jet or wind origin for the enhanced photoelectric absorption. We compare MWC 480's O VI emission with other Herbig Ae stars. The distribution of the emission in inclination, and lack of a correlation of profile shape and system inclination excludes equatorially confined accretion for the FUSE Herbig Ae stars. The photoelectric absorption data further suggest that the accretion footprint on MWC 480 and other Herbig Ae stars is located at high-temperate, rather than polar, latitudes. These findings support the presence of funneled accretion in MWC 480 and Herbig Ae stars, strengthening the parallel to T Tauri stars.

  10. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.

    PubMed Central

    Gao, F; Robertson, D L; Morrison, S G; Hui, H; Craig, S; Decker, J; Fultz, P N; Girard, M; Shaw, G M; Hahn, B H; Sharp, P M

    1996-01-01

    Since 1989, human immunodeficiency virus type 1 (HIV-1) has spread explosively through the heterosexual population in Thailand. This epidemic is caused primarily by viruses classified as "subtype E", which, on the basis of limited sequence comparisons, appear to represent hybrids of subtypes A (gag) and E (env). However, the true evolutionary origins of "subtype E" viruses are still obscure since no complete genomes have been analyzed, and only one full-length subtype A sequence has been available for phylogenetic comparison. In this study, we determined full-length proviral sequences for "subtype E" viruses from Thailand (93TH253) and the Central African Republic (90CR402) and for a subtype A virus from Uganda (92UG037). We also sequenced the long terminal repeat (LTR) regions from 16 virus strains representing clades A, C, E, F, and G. Detailed phylogenetic analyses of these sequences indicated that "subtype E" viruses do indeed represent A/E recombinants with multiple points of crossover along their genomes. The extracellular portion of env, parts of vif and vpr, as well as most of the LTR are of subtype E origin, whereas the remainder of the genome is of subtype A origin. The possibility that the discordant phylogenetic positions of "subtype E" viruses in gag- and env-derived trees are the result of unusual rates or patterns of evolution was also considered but was ruled out on the basis of two lines of evidence: (i) phylogenetic trees constructed for synonymous and nonsynonymous substitutions yielded the same discordant branching orders for "subtype E" gag and env gene sequences, thus excluding selection-driven evolution, and (ii) multiple crossovers in the viral genome are most consistent with the copy choice model of recombination and have been observed in other documented examples of HIV-1 intersubtype recombination. Thai and CAR "subtype E" viruses exhibited the same pattern of A/E mosaicism, indicating that the recombination event occurred in Africa prior

  11. Search for gamma-ray emissions from AE Aquarii with Fermi LAT

    NASA Astrophysics Data System (ADS)

    Li, Jian; Rea, Nanda; De Ona Wilhelmi, Emma; Torres, Diego F.; Hou, Xian

    2016-07-01

    AE Aquarii is a cataclysmic variable with the fastest known rotating magnetized white dwarf (P_{spin} = 33.08 s). We report on deep searches for gamma-ray emission and pulsations from AE Aquarii in seven years of Fermi-LAT Pass 8 data. Using different X-ray observations spanning 20 years, we substantially extended the timing ephemeris of AE Aquarii. A spin phase jump was discovered between MJD 55122.5 - 56078.64 by X-ray timing analysis. Using the extended timing ephemeris, we searched for gamma-ray pulsations at the spin period and its first harmonic. No gamma-ray pulsation were detected above 3 sigma significance. Neither steady gamma-ray emission nor gamma-ray variability of AE Aquarii were detected by Fermi-LAT. We impose the most restrictive upper limit on the gamma-ray emission from AE Aquarii to date, as 1.23×10^{-12} erg cm^{-2} s^{-1} in 0.1-300 GeV range providing constrains on models.

  12. Organizing for empowerment: an interview with AES's Roger Sant and Dennis Bakke. Interview by Suzy Wetlaufer.

    PubMed

    Sant, R; Bakke, D

    1999-01-01

    The topic of empowerment is receiving a lot of attention, but how many employees are truly empowered? At the global electricity giant AES Corporation, the answer is all 40,000 of them. In this interview, chairman Roger Sant and CEO Dennis Bakke reflect on their trials and triumphs in creating an exceptional company and explain how their employee-run company works. When they founded AES in 1981, Sant and Bakke set out to create a company where people could have engaging experiences on a daily basis--a company that embodied the principles of fairness, integrity, social responsibility, and fun. Putting those principles into action has created something unique--an ecosystem of real empowerment. What does that system look like? Rather than having a traditional hierarchical chain of command, AES is organized around small teams that are responsible for operations and maintenance. Moreover, AES has eliminated functional departments; there's no corporate marketing division or human resources department. For the system to work, every person must become a well-rounded generalist--a mini-CEO. That, in turn, redefines the jobs of the people at headquarters. Instead of setting strategy and making the "the big decisions," Sant and Bakke act as advisers, guardians of the principles, accountability officers, and chief encouragers. Can other companies successfully adopt the mechanics of such a system? Not unless they first adopt the shared principles that have guided AES since its inception. "Empowerment without values isn't empowerment," says Sant. "It's just technique," adds Bakke.

  13. AE sources of droplet SCC testing in type 304 stainless steel

    NASA Astrophysics Data System (ADS)

    Shiwa, Mitsuharu; Masuda, Hiroyuki; Yamawaki, Hisashi; Ito, Kaita; Enoki, Manabu

    2014-02-01

    Acoustic emission (AE) and optical video microscope (VMS) monitoring was proposed to investigate the stress corrosion cracking of type 304 stainless steels of work-hardened (WH) and solution heat treatment (ST) specimen caused by a small magnesium-chloride droplet. The crack propagation length could measure clearly under the droplet with coved glass by VMS. The cracks velocities of WH were 3.2-5.2 ×10 μm/ks and it propagated almost continuously. That of ST were 2.1-3.8 ×10 μm/ks and it propagated similar to WH. AE signals were generated at early stage of SCC testing, after that they were generated discontinuously in WH. None of AE signals were detected in ST. The detected AE signals were synchronized with bubbling from pitting and on the crack in a droplet observed by high magnification VMS. With the SEM observations, cracking bottom of pitting and small pitting on the crack were observed at the bubbling position. It could be concluded that the detected AE signals were mainly attributed to the bubbling from the pitting.

  14. MEASURING THE STELLAR ACCRETION RATES OF HERBIG Ae/Be STARS

    SciTech Connect

    Donehew, Brian; Brittain, Sean E-mail: sbritt@clemson.edu

    2011-02-15

    The accretion rate of young stars is a fundamental characteristic of these systems. While accretion onto T Tauri stars has been studied extensively, little work has been done on measuring the accretion rate of their intermediate-mass analogs, the Herbig Ae/Be stars. Measuring the stellar accretion rate of Herbig Ae/Bes is not straightforward both because of the dearth of metal absorption lines available for veiling measurements and the intrinsic brightness of Herbig Ae/Be stars at ultraviolet wavelengths where the brightness of the accretion shock peaks. Alternative approaches to measuring the accretion rate of young stars by measuring the luminosity of proxies such as the Br {gamma} emission line have not been calibrated. A promising approach is the measurement of the veiling of the Balmer discontinuity. We present measurements of this veiling as well as the luminosity of Br {gamma}. We show that the relationship between the luminosity of Br {gamma} and the stellar accretion rate for classical T Tauri stars is consistent with Herbig Ae stars but not Herbig Be stars. We discuss the implications of this finding for understanding the interaction of the star and disk for Herbig Ae/Be stars.

  15. Data mining based full ceramic bearing fault diagnostic system using AE sensors.

    PubMed

    He, David; Li, Ruoyu; Zhu, Junda; Zade, Mikhail

    2011-12-01

    Full ceramic bearings are considered the first step toward full ceramic, oil-free engines in the future. No research on full ceramic bearing fault diagnostics using acoustic emission (AE) sensors has been reported. Unlike their steel counterparts, signal processing methods to extract effective AE fault characteristic features and fault diagnostic systems for full ceramic bearings have not been developed. In this paper, a data mining based full ceramic bearing diagnostic system using AE based condition indicators (CIs) is presented. The system utilizes a new signal processing method based on Hilbert Huang transform to extract AE fault features for the computation of CIs. These CIs are used to build a data mining based fault classifier using a k-nearest neighbor algorithm. Seeded fault tests on full ceramic bearing outer race, inner race, balls, and cage are conducted on a bearing diagnostic test rig and AE burst data are collected. The effectiveness of the developed fault diagnostic system is validated using real full ceramic bearing seeded fault test data.

  16. Assimilation and implications of AE-9/AP-9 in the design process of JPL missions

    NASA Astrophysics Data System (ADS)

    de Soria-Santacruz Pich, M.; Jun, I.

    2015-12-01

    The NASA AE-8/AP-8 has been the standard geospace environment specification for decades. This model describes the energetic particle environment around the Earth and is currently the default model used in the design of space missions at the Jet Propulsion Laboratory (JPL). Moreover, the model plays a critical role in the determination of the shielding and survivability of the satellites orbiting our planet. A recent update supported by the Air Force Research Laboratory (AFRL) and the National Reconnaissance Office (NRO), the AE-9/AP-9 model, was released in September 2012 and included many improvements like increased spatial resolution and the specification of the uncertainty due to instrument errors or space weather variability. A current effort at JPL is in place with the objective of making a decision within the Laboratory on the transition from AE-8/AP-8 to the new AE-9/AP-9. In this study we present the results of this effort, which involves the comparison between both versions of the model for different satellite orbits, the comparison between AE-9/AP-9 and in-situ satellite data from the Van Allen Probes and the OSTM/Jason 2 satellite, and the implications of adopting the new model for spacecraft design in terms of survivability, shielding, single event effects, and spacecraft charging.

  17. New insights into the origin of the B genome of hexaploid wheat: Evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides

    PubMed Central

    Salse, Jérome; Chagué, Véronique; Bolot, Stéphanie; Magdelenat, Ghislaine; Huneau, Cécile; Pont, Caroline; Belcram, Harry; Couloux, Arnaud; Gardais, Soazic; Evrard, Aurélie; Segurens, Béatrice; Charles, Mathieu; Ravel, Catherine; Samain, Sylvie; Charmet, Gilles; Boudet, Nathalie; Chalhoub, Boulos

    2008-01-01

    Background Several studies suggested that the diploid ancestor of the B genome of tetraploid and hexaploid wheat species belongs to the Sitopsis section, having Aegilops speltoides (SS, 2n = 14) as the closest identified relative. However molecular relationships based on genomic sequence comparison, including both coding and non-coding DNA, have never been investigated. In an attempt to clarify these relationships, we compared, in this study, sequences of the Storage Protein Activator (SPA) locus region of the S genome of Ae. speltoides (2n = 14) to that of the A, B and D genomes co-resident in the hexaploid wheat species (Triticum aestivum, AABBDD, 2n = 42). Results Four BAC clones, spanning the SPA locus of respectively the A, B, D and S genomes, were isolated and sequenced. Orthologous genomic regions were identified as delimited by shared non-transposable elements and non-coding sequences surrounding the SPA gene and correspond to 35 268, 22 739, 43 397 and 53 919 bp for the A, B, D and S genomes, respectively. Sequence length discrepancies within and outside the SPA orthologous regions are the result of non-shared transposable elements (TE) insertions, all of which inserted after the progenitors of the four genomes divergence. Conclusion On the basis of conserved sequence length as well as identity of the shared non-TE regions and the SPA coding sequence, Ae speltoides appears to be more evolutionary related to the B genome of T. aestivum than the A and D genomes. However, the differential insertions of TEs, none of which are conserved between the two genomes led to the conclusion that the S genome of Ae. speltoides has diverged very early from the progenitor of the B genome which remains to be identified. PMID:19032732

  18. Synthesis, Crystal and Electronic Structures of the Pnictides AE3TrPn3 (AE = Sr, Ba; Tr = Al, Ga; Pn = P, As)

    SciTech Connect

    Stoyko, Stanislav; Voss, Leonard; He, Hua; Bobev, Svilen

    2015-09-24

    New ternary arsenides AE3TrAs3 (AE = Sr, Ba; Tr = Al, Ga) and their phosphide analogs Sr3GaP3 and Ba3AlP3 have been prepared by reactions of the respective elements at high temperatures. Single-crystal X-ray diffraction studies reveal that Sr3AlAs3 and Ba3AlAs3 adopt the Ba3AlSb3-type structure (Pearson symbol oC56, space group Cmce, Z = 8). This structure is also realized for Sr3GaP3 and Ba3AlP3. Likewise, the compounds Sr3GaAs3 and Ba3GaAs3 crystallize with the Ba3GaSb3-type structure (Pearson symbol oP56, space group Pnma, Z = 8). Both structures are made up of isolated pairs of edge-shared AlPn4 and GaPn4 tetrahedra (Pn = pnictogen, i.e., P or As), separated by the alkaline-earth Sr2+ and Ba2+ cations. In both cases, there are no homoatomic bonds, hence, regardless of the slightly different atomic arrangements, both structures can be rationalized as valence-precise [AE2+]3[Tr3+][Pn3-]3, or rather [AE2+]6[Tr2Pn6]12-, i.e., as Zintl phases.

  19. The use of MP-AES for analysis major and micronutrients in soils

    NASA Astrophysics Data System (ADS)

    Tonutare, Tonu; Rodima, Ako; Künnapas, Allan; Kõlli, Raimo; Albre, Imbi

    2016-04-01

    The ICP with OES or MS detectors is today the most common multielement technigues for soil element analysis. Although the micro-plasma has been available for decades, there were no commercially available instruments on the market. The situation changed in 2011 when the Agilent 4100 MP-AES appeared. The use of nitrogen plasma of the MP-AES provides reduction in the operational and maintenance costs compared to ICP and therefore makes it very perspective for soil analysis. The nitrogen microwave excited plasma has diferent properties compared to ICP argon plasma and this cause the specific behaviour of elements during the excitation. Here we present the results and optimal instrumental parameters for determination of soil nutrients (K, Ca, Mg, Fe and Zn) by MP-AES.

  20. HHT-based AE characteristics of natural fatigue cracks in rotating shafts

    NASA Astrophysics Data System (ADS)

    Lin, Li; Chu, Fulei

    2012-01-01

    This paper addresses an application of recently developed Hilbert-Huang transform (HHT) signal processing technique on AE feature extraction of natural fatigue cracks in rotating shafts providing an energy-frequency-time distribution with adaptable precision. A special purpose built test rig was employed for generating natural rotating fatigue crack on a shaft. Acoustic emission signals are non-stationary and nonlinear transients, whose waveforms and arrival times are unknown. A common problem in AE signal processing is to extract physical parameters of interest when these involve joint variations of time and frequency. It has been found that HHT appears to be a better tool compared to fast Fourier transform and continuous wavelet transform for natural fatigue crack characterization in a rotating rotor in all experiment cases. It was concluded that HHT-based AE technology successfully extracted the features of natural fatigue cracks induced on rotating shafts.

  1. Winter Refuge for Aedes aegypti and Ae. albopictus Mosquitoes in Hanoi during Winter

    PubMed Central

    Tsunoda, Takashi; Cuong, Tran Chi; Dong, Tran Duc; Yen, Nguyen Thi; Le, Nguyen Hoang; Phong, Tran Vu; Minakawa, Noboru

    2014-01-01

    Dengue occurs throughout the year in Hanoi, Vietnam, despite winter low temperatures <10°C. During July 2010 to March 2012, we surveyed monthly for Aedes larvae and pupae in 120 houses in 8 Hanoi districts. Aedes albopictus preferred discarded containers in summer and pupal density drastically decreased in winter. Aedes aegypti preferred concrete tanks and this preference increased in winter. Even in winter, the lowest water temperature found in concrete tanks was >14°C, exceeding the developmental zero point of Ae. aegypti. Although jars, drums and concrete tanks were the dominant containers previously (1994–97) in Hanoi, currently the percentage of residences with concrete tanks was still high while jars and drums were quite low. Our study showed that concrete tanks with broken lids allowing mosquitoes access were important winter refuge for Ae. aegypti. We also indicate a concern about concrete tanks serving as foci for Ae. aegypti to expand their distribution in cooler regions. PMID:24752230

  2. Comparative study of active and passive sensing with AE and PWAS transducers

    NASA Astrophysics Data System (ADS)

    Yu, Lingyu; Giurgiutiu, Victor; Yu, Jianguo; Ziehl, Paul; Zhao, Liuxian

    2012-04-01

    Monitoring of fatigue cracking in bridges using a combined passive and active scheme has been approached by the authors. Passive Acoustic Emission (AE) monitoring has shown to be able to detect crack growth behavior by picking up the stress waves resulting from the breathing of cracks while active ultrasonic pulsing can quantitatively assess structural integrity by sensing out an interrogating pulse and receive the structural reflections from the discontinuity. In this paper, we present a comparative study of active and passive sensing with two types of transducers: (a) AE transducers, and (b) embeddable piezoelectric wafer active sensors (PWAS). The study was performed experimentally on steel plates. Both pristine and damaged (notched) conditions were considered. For active sensing, pitchcatch configuration was examined in which one transducer was the transmitter and another transducer acted as the receiver. The ping signal was generated by the AE hardware/software package AEwin. For passive sensing, 0.5-mm lead breaks were executed both on top and on the edge of the plate. The comparative nature of the study was achieved by having the AE and PWAS transducers placed on the same location but on the opposite sides of the plate. The paper presents the main findings of this study in terms of (a) signal strength; (b) signal-to-noise (S/N) ratio; (c) waveform clarity; (d) waveform Fourier spectrum contents and bandwidth; (e) capability to detect and localize AE source; (f) capability to detect and localize damage. The paper performs a critical discussion of the two sensing methodologies, conventional AE transducers vs. PWAS transducers.

  3. Growth of Sn on Mo(110) studied by AES and STM

    NASA Astrophysics Data System (ADS)

    Krupski, A.

    2011-07-01

    Scanning tunneling microscopy (STM) and Auger electron spectroscopy (AES) have been used to investigate the growth behavior of ultra-thin Sn films on a Mo(110) surface at room temperature. An analysis of STM and AES measurements indicates that layer-by-layer growth (Frank-van der Merwe mode) for the first two layers of Sn is observed. For submonolayer coverage, tin prefers to nucleate randomly and creates one atom high islands on Mo terraces. In the completed first and second layer, no ordered regions were observed. As the sample is post-annealed to 800 K, the rearrangement of an existing film suggests a Sn-Mo surface alloy formation.

  4. Uses of AES and RGA to study neutron-irradiation-enhanced segregation to internal surfaces

    SciTech Connect

    Gessel, G.R.; White, C.L.

    1980-01-01

    The high flux of point defects to sinks during neutron irradiation can result in segregation of impurity or alloy additions to metals. Such segregants can be preexisting or produced by neutron-induced transmutations. This segregation is known to strongly influence swelling and mechanical properties. Over a period of years, facilities have been developed at ORNL incorporating AES and RGA to examine irradiated materials. Capabilities of this system include in situ tensile fracture at elevated temperatures under ultrahigh vacuum 10/sup -10/ torr and helium release monitoring. AES and normal incidence inert ion sputtering are exploited to examine segregation at the fracture surface and chemical gradients near the surface.

  5. Automated Estimating System (AES), Standard Value Update Program, user`s manual

    SciTech Connect

    Schwartz, R.K.; Holder, D.A.

    1994-08-01

    This manual contains instructions for operating the Standard Value Update Program. This program is operated and controlled by selected individuals in the Estimating and Scheduling Engineering Department of the Martin Marietta Energy Systems, Inc., Engineering Division. It is used to control and standardized input into the Automated Estimating System (AES) Estimating program, a person computer-based software package designed to aid in the creation, updating, and reporting of project cost estimates. The AES Estimating program is documented in a separate user`s manual.

  6. AES-128 Bit Algorithm Using Fully Pipelined Architecture for Secret Communication

    NASA Astrophysics Data System (ADS)

    Gnanambika, M.; Adilakshmi, S.; Noorbasha, Fazal

    2012-03-01

    In this paper, an efficient method for high speed hardware implementation of AES algorithm is presented. So far, many implementations of AES have been proposed, for various goals that effect the Sub Byte transformation in various ways. These methods of implementation are based on combinational logic and are done in polynomial bases. In the proposed architecture, it is done by using composite field arithmetic in normal bases. In addition, efficient key expansion architecture suitable for 6 sub pipelined round units is also presented. These designs were described using VerilogHDL, simulated using Modelsim.

  7. Mobility of the piggyBac transposon in embryos of the vectors of Dengue fever (Aedes albopictus) and La Crosse encephalitis (Ae. triseriatus).

    PubMed

    Lobo, N; Li, X; Hua-Van, A; Fraser, M J

    2001-03-01

    The re-emergence of arboviral diseases such as Dengue Fever and La Crosse encephalitis is primarily due to the failure of insect vector control strategies. The development of a procedure capable of producing stable germ-line transformants in the insect vectors of these diseases would bridge the gap between gene expression systems being developed to curb vector transmission and the identification of important genes and regulatory sequences and their reintroduction back into the insect genome in the form of vector control strategies. The transposable element piggyBac is capable of transposition in a variety of insect species, and could serve as a versatile insect transformation vector. Using plasmid-based excision and transposition assays, we report that this short-ITR transposon undergoes precise, transposase-dependent excision and transposition in embryos of Aedes albopictus and Aedes triseriatus, the vectors of Dengue fever and LaCrosse encephalitis, respectively. These assays allow us easily and rapidly to confirm and assess the potential utility of piggyBac as a gene transfer tool in a given species. piggyBac is an exceptionally mobile and versatile genetic transformation vector, comparable to other transposons currently in use for the transformation of insects. The mobility of the piggyBac element seen in both Ae. albopictus and Ae. triseriatus is further evidence that it can be employed as a germ-line vector in important insect disease vectors.

  8. The excess infrared emission of Herbig Ae/Be stars - Disks or envelopes?

    NASA Technical Reports Server (NTRS)

    Hartmann, Lee; Kenyon, Scott J.; Calvet, Nuria

    1993-01-01

    It is suggested that the near-IR emission in many Herbig Ae/Be stars arises in surrounding dusty envelopes, rather than circumstellar disks. It is shown that disks around Ae/Be stars are likely to remain optically thick at the required accretion rates. It is proposed that the IR excesses of many Ae/Be stars originate in surrounding dust nebulae instead of circumstellar disks. It is suggested that the near-IR emission of the envelope is enhanced by the same processes that produce anomalous strong continuum emission at temperatures of about 1000 K in reflection nebulae surrounding hot stars. This near-IR emission could be due to small grains transiently heated by UV photons. The dust envelopes could be associated with the primary star or a nearby companion star. Some Ae/Be stars show evidence for the 3.3-6.3-micron emission features seen in reflection nebulae around hot stars, which lends further support to this suggestion.

  9. Unseen but present danger: improving the safe prescribing of anti-embolism stockings (AES).

    PubMed

    Bradley, Alison

    2014-01-01

    A strong evidence base exists supporting thromboprophylaxis for venous thromboembolism (VTE) in surgical patients. Given the ageing population, obesity epidemic, and rise in type 2 diabetes, VTE and peripheral vascular disease (PAD) are likely to become an escalating problem. PAD is a contraindication to the use of anti-embolism stockings (AES). Half of those patients diagnosed with PAD report no symptoms, potentially underestimating its prevalence. Implementation of guidelines for thromboprophylaxis, including the safe prescribing of AES, is therefore imperative. The aims of this project were to establish whether thromboprophylaxis was being prescribed correctly, and appropriately, to all surgical inpatients. This included documented evidence that peripheral pulses had been examined - and, in the case of diabetic patients, that there was documentation of full peripheral neurovascular examination - before AES were prescribed. Data were collected from case notes of all surgical inpatients. Foundation year 1 doctors (FY1s) completed a questionnaire assessing their knowledge of local guidelines. Teaching sessions and posters summarising local guidelines were delivered to FY1s. Appropriate pharmacological prescribing improved from 57.69% to 100%. AES were appropriately prescribed for 65.38% of patients. Post intervention this increased to 79.17%. 0% had documented peripheral neurovascular examination. This increased to 50% post intervention.

  10. The Impact of Church Affiliation on Language Use in Kwara'ae (Solomon Islands).

    ERIC Educational Resources Information Center

    Watson-Gegeo, Karen Ann; Gegeo, David Welchman

    1991-01-01

    The impact of church affiliation on language use, identity, and change among Kwara'ae speakers in the Solomon Islands is examined. It was found that members of different sects signal their separate identities not only through linguistic code but also through discourse patterns and nonverbal aspects of communication. (26 references) (JL)

  11. Production and Perception of the English /ae/-/?/ Contrast in Switched-Dominance Speakers

    ERIC Educational Resources Information Center

    Casillas, Joseph V.; Simonet, Miquel

    2016-01-01

    This study investigates how fluent second-language (L2) learners of English produce and perceive the /ae/-/?/ vowel contrast of Southwestern American English. Two learner groups are examined: (1) early, proficient English speakers who were raised by Spanish-speaking families but who became dominant in English during childhood and, as adults, lack…

  12. 75 FR 57660 - Airworthiness Directives; Rolls-Royce Corporation (RRC) AE 3007A Series Turbofan Engines

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-22

    ... Corporation (RRC) AE 3007A Series Turbofan Engines AGENCY: Federal Aviation Administration (FAA), DOT. ACTION... series turbofan engines. That AD currently requires performing an eddy current inspection (ECI) or...-08-51, Amendment 39-15905 (74 FR 22091, May 12, 2009), with a proposed AD. The proposed AD applies...

  13. Public Health Response to Aedes aegypti and Ae. albopictus Mosquitoes Invading California, USA.

    PubMed

    Porse, Charsey Cole; Kramer, Vicki; Yoshimizu, Melissa Hardstone; Metzger, Marco; Hu, Renjie; Padgett, Kerry; Vugia, Duc J

    2015-10-01

    Aedes aegypti and Ae. albopictus mosquitoes, primary vectors of dengue and chikungunya viruses, were recently detected in California, USA. The threat of potential local transmission of these viruses increases as more infected travelers arrive from affected areas. Public health response has included enhanced human and mosquito surveillance, education, and intensive mosquito control.

  14. 76 FR 4089 - Proposed Information Collection; Comment Request; Automated Export System (AES) Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-24

    ... publish export trade data. Title 15, Code of Federal Regulations (CFR), Part 30, contains the regulatory... policies that affect the economy. These data also enable U.S. businesses to develop practical export... economy. These data collected from the AES record are also used for export control purposes under Title...

  15. Program of Aes Orbit Determination from Measurement Data of Astronomical Station ("orbita - M")

    NASA Astrophysics Data System (ADS)

    Sheptoon, A. D.; Kolesnik, S. Ja.; Paltsev, N. G.

    A program is developed of determining AES orbits from measurement data of one or several astronomical stations. Its algorithm is rather stable to small errors of measurements and permits to use data with low accuracy for calculations.The use of several transits data enables to increase presision of orbital semi-major axe determination by nearly 10000 times.

  16. Investigation of Participation in Adult Education in Turkey: AES Data Analysis

    ERIC Educational Resources Information Center

    Dincer, N. Nergiz; Tekin-Koru, Ayca; Askar, Petek

    2016-01-01

    The aim of this study is to identify the determinants of participation in adult education in Turkey. The analysis is conducted using the Adult Education Survey (AES), conducted by TurkStat. The results indicate that economic growth in the sector of employment significantly and positively affects the odds for adult education participation. The data…

  17. An intramolecular transport metabolon: fusion of carbonic anhydrase II to the COOH terminus of the Cl(-)/HCO(3)(-)exchanger, AE1.

    PubMed

    Sowah, Daniel; Casey, Joseph R

    2011-08-01

    Anion exchanger 1 (AE1) is the plasma membrane Cl(-)/HCO(3)(-) exchanger of erythrocytes. Carbonic anhydrases (CA) provide substrate for AE1 by catalyzing the reaction, H(2)O + CO(2) ↔ HCO(3)(-) + H(+). The physical complex of CAII with AE1 has been proposed to maximize anion exchange activity. To examine the effect of CAII catalysis on AE1 transport rate, we fused either CAII-wild type or catalytically inactive CAII-V143Y to the cytoplasmic COOH terminus of AE1 to form AE1.CAII and AE1.CAII-V143Y, respectively. When expressed in transfected human embryonic kidney 293 cells, AE1.CAII had a similar Cl(-)/HCO(3)(-) exchange activity to AE1 alone, as assessed by the flux of H(+) equivalents (87 ± 4% vs. AE1) or rate of change of intracellular Cl(-) concentration (93 ± 4% vs. AE1), suggesting that CAII does not activate AE1. In contrast, AE1.CAII-V143Y displayed transport rates for H(+) equivalents and Cl(-) of 55 ± 2% and of 40 ± 2%, versus AE1. Fusion of CAII to AE1 therefore reduces anion transport activity, but this reduction is compensated for during Cl(-)/HCO(3)(-) exchange by the presence of catalytically active CAII. Overexpression of free CAII-V143Y acts in a dominant negative manner to reduce AE1-mediated HCO(3)(-) transport by displacement of endogenous CAII-wild type from its binding site on AE1. To examine whether AE1.CAII bound endogenous CAII, we coexpressed CAII-V143Y along with AE1 or AE1.CAII. The bicarbonate transport activity of AE1 was inhibited by CAII-V143Y, whereas the activity of AE1.CAII was unaffected by CAII-V143Y, suggesting impaired transport activity upon displacement of functional CAII from AE1 but not AE1.CAII. Taken together, these data suggest that association of functional CAII with AE1 increases Cl(-)/HCO(3)(-) exchange activity, consistent with the HCO(3)(-) transport metabolon model.

  18. Organizing for empowerment: an interview with AES's Roger Sant and Dennis Bakke. Interview by Suzy Wetlaufer.

    PubMed

    Sant, R; Bakke, D

    1999-01-01

    The topic of empowerment is receiving a lot of attention, but how many employees are truly empowered? At the global electricity giant AES Corporation, the answer is all 40,000 of them. In this interview, chairman Roger Sant and CEO Dennis Bakke reflect on their trials and triumphs in creating an exceptional company and explain how their employee-run company works. When they founded AES in 1981, Sant and Bakke set out to create a company where people could have engaging experiences on a daily basis--a company that embodied the principles of fairness, integrity, social responsibility, and fun. Putting those principles into action has created something unique--an ecosystem of real empowerment. What does that system look like? Rather than having a traditional hierarchical chain of command, AES is organized around small teams that are responsible for operations and maintenance. Moreover, AES has eliminated functional departments; there's no corporate marketing division or human resources department. For the system to work, every person must become a well-rounded generalist--a mini-CEO. That, in turn, redefines the jobs of the people at headquarters. Instead of setting strategy and making the "the big decisions," Sant and Bakke act as advisers, guardians of the principles, accountability officers, and chief encouragers. Can other companies successfully adopt the mechanics of such a system? Not unless they first adopt the shared principles that have guided AES since its inception. "Empowerment without values isn't empowerment," says Sant. "It's just technique," adds Bakke. PMID:10345387

  19. Acoustic emission (AE) health monitoring of diaphragm type couplings using neural network analysis

    NASA Astrophysics Data System (ADS)

    Godinez-Azcuaga, Valery F.; Shu, Fong; Finlayson, Richard D.; O'Donnell, Bruce

    2005-05-01

    This paper presents the latest results obtained from Acoustic Emission (AE) monitoring and detection of cracks and/or damage in diaphragm couplings, which are used in some aircraft and engine drive systems. Early detection of mechanical failure in aircraft drive train components is a key safety and economical issue with both military and civil sectors of aviation. One of these components is the diaphragm-type coupling, which has been evaluated as the ideal drive coupling for many application requirements such as high speed, high torque, and non-lubrication. Its flexible axial and angular displacement capabilities have made it indispensable for aircraft drive systems. However, diaphragm-type couplings may develop cracks during their operation. The ability to monitor, detect, identify, and isolate coupling cracks on an operational aircraft system is required in order to provide sufficient advance warning to preclude catastrophic failure. It is known that metallic structures generate characteristic Acoustic Emission (AE) during crack growth/propagation cycles. This phenomenon makes AE very attractive among various monitoring techniques for fault detection in diaphragm-type couplings. However, commercially available systems capable of automatic discrimination between signals from crack growth and normal mechanical noise are not readily available. Positive classification of signals requires experienced personnel and post-test data analysis, which tend to be a time-consuming, laborious, and expensive process. With further development of automated classifiers, AE can become a fully autonomous fault detection technique requiring no human intervention after implementation. AE has the potential to be fully integrated with automated query and response mechanisms for system/process monitoring and control.

  20. Anisotropic electrical and thermal conductivity in Bi2AE2Co2O8+δ [AE = Ca, Sr1-xBax (x = 0.0, 0.25, 0.5, 0.75, 1.0)] single crystals

    NASA Astrophysics Data System (ADS)

    Dong, Song-Tao; Zhang, Bin-Bin; Xiong, Ye; Lv, Yang-Yang; Yao, Shu-Hua; Chen, Y. B.; Zhou, Jian; Zhang, Shan-Tao; Chen, Yan-Feng

    2015-09-01

    Bi2AE2Co2O8+δ (AE represents alkaline earth), constructed by stacking of rock-salt Bi2AE2O4 and triangle CoO2 layers alternatively along c-axis, is one of promising thermoelectric oxides. The most impressive feature of Bi2AE2Co2O8+δ, as reported previously, is their electrical conductivity mainly lying along CoO2 plane, adjusting Bi2AE2O4 layer simultaneously manipulates both thermal conductivity and electrical conductivity. It in turn optimizes thermoelectric performance of these materials. In this work, we characterize the anisotropic thermal and electrical conductivity along both ab-plane and c-direction of Bi2AE2Co2O8+δ (AE = Ca, Sr, Ba, Sr1-xBax) single crystals. The results substantiate that isovalence replacement in Bi2AE2Co2O8+δ remarkably modifies their electrical property along ab-plane; while their thermal conductivity along ab-plane only has a slightly difference. At the same time, both the electrical conductivity and thermal conductivity along c-axis of these materials also have dramatic changes. Certainly, the electrical resistance along c-axis is too high to be used as thermoelectric applications. These results suggest that adjusting nano-block Bi2AE2O4 layer in Bi2AE2Co2O8+δ cannot modify the thermal conductivity along high electrical conductivity plane (ab-plane here). The evolution of electrical property is discussed by Anderson localization and electron-electron interaction U. And the modification of thermal conductivity along c-axis is attributed to the microstructure difference. This work sheds more light on the manipulation of the thermal and electrical conductivity in the layered thermoelectric materials.

  1. Characterization of Maize Amylose-Extender (ae) Mutant Starches. Part I: Relationship Between Resistant Starch Contents and Molecular Structures

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Endosperm starches were isolated from kernels of seven maize amylose-extender (ae) lines. The resistant starch (RS) contents, measured using AOAC method 991.43, showed that three new ae-mutant starch lines developed by the USDA-ARS Germplasm Enhancement (GEM) and Truman State University had larger R...

  2. 40 CFR 174.530 - Bacillus thuringiensis Cry2Ae protein in cotton; exemption from the requirement of a tolerance.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... in cotton; exemption from the requirement of a tolerance. 174.530 Section 174.530 Protection of... Cry2Ae protein in cotton; exemption from the requirement of a tolerance. Residues of Bacillus thuringiensis Cry2Ae protein in or on the food and feed commodities of cotton; cotton, undelinted seed;...

  3. 40 CFR 174.530 - Bacillus thuringiensis Cry2Ae protein in cotton; temporary exemption from the requirement of a...

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... in cotton; temporary exemption from the requirement of a tolerance. 174.530 Section 174.530... thuringiensis Cry2Ae protein in cotton; temporary exemption from the requirement of a tolerance. Residues of Bacillus thuringiensis Cry2Ae protein in or on the food commodities of cotton, cotton; cotton,...

  4. 40 CFR 174.530 - Bacillus thuringiensis Cry2Ae protein in cotton; exemption from the requirement of a tolerance.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... in cotton; exemption from the requirement of a tolerance. 174.530 Section 174.530 Protection of... Cry2Ae protein in cotton; exemption from the requirement of a tolerance. Residues of Bacillus thuringiensis Cry2Ae protein in or on the food and feed commodities of cotton; cotton, undelinted seed;...

  5. 40 CFR 174.530 - Bacillus thuringiensis Cry2Ae protein in cotton; exemption from the requirement of a tolerance.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... in cotton; exemption from the requirement of a tolerance. 174.530 Section 174.530 Protection of... Cry2Ae protein in cotton; exemption from the requirement of a tolerance. Residues of Bacillus thuringiensis Cry2Ae protein in or on the food and feed commodities of cotton; cotton, undelinted seed;...

  6. 40 CFR 174.530 - Bacillus thuringiensis Cry2Ae protein in cotton; temporary exemption from the requirement of a...

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... in cotton; temporary exemption from the requirement of a tolerance. 174.530 Section 174.530... thuringiensis Cry2Ae protein in cotton; temporary exemption from the requirement of a tolerance. Residues of Bacillus thuringiensis Cry2Ae protein in or on the food commodities of cotton, cotton; cotton,...

  7. 19 CFR 192.13 - Revocation of participants' AES post-departure (Option 4) filing privileges; appeal procedures.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Revocation of participants' AES post-departure... participants' AES post-departure (Option 4) filing privileges; appeal procedures. (a) Reasons for revocation... days of receipt of the notice of decision. Except as stated elsewhere in this paragraph, the...

  8. 75 FR 70742 - AES Laurel Mountain, LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission AES Laurel Mountain, LLC; Supplemental Notice That Initial Market-Based Rate... notice in the above-referenced proceeding of AES Laurel Mountain, LLC's application for market-based...

  9. Production of Mucosally Transmissible SHIV Challenge Stocks from HIV-1 Circulating Recombinant Form 01_AE env Sequences

    PubMed Central

    Tartaglia, Lawrence J.; Chang, Hui-Wen; Lee, Benjamin C.; Abbink, Peter; Ng’ang’a, David; Boyd, Michael; Lavine, Christy L.; Lim, So-Yon; Sanisetty, Srisowmya; Whitney, James B.; Seaman, Michael S.; Rolland, Morgane; Tovanabutra, Sodsai; Ananworanich, Jintanat; Robb, Merlin L.; Kim, Jerome H.; Michael, Nelson L.; Barouch, Dan H.

    2016-01-01

    Simian-human immunodeficiency virus (SHIV) challenge stocks are critical for preclinical testing of vaccines, antibodies, and other interventions aimed to prevent HIV-1. A major unmet need for the field has been the lack of a SHIV challenge stock expressing circulating recombinant form 01_AE (CRF01_AE) env sequences. We therefore sought to develop mucosally transmissible SHIV challenge stocks containing HIV-1 CRF01_AE env derived from acutely HIV-1 infected individuals from Thailand. SHIV-AE6, SHIV-AE6RM, and SHIV-AE16 contained env sequences that were >99% identical to the original HIV-1 isolate and did not require in vivo passaging. These viruses exhibited CCR5 tropism and displayed a tier 2 neutralization phenotype. These challenge stocks efficiently infected rhesus monkeys by the intrarectal route, replicated to high levels during acute infection, and established chronic viremia in a subset of animals. SHIV-AE16 was titrated for use in single, high dose as well as repetitive, low dose intrarectal challenge studies. These SHIV challenge stocks should facilitate the preclinical evaluation of vaccines, monoclonal antibodies, and other interventions targeted at preventing HIV-1 CRF01_AE infection. PMID:26849216

  10. [Software development of multi-element transient signal acquisition and processing with multi-channel ICP-AES].

    PubMed

    Zhang, Y; Zhuang, Z; Wang, X; Zhu, E; Liu, J

    2000-02-01

    A software for multi-channel ICP-AES multi-element transient signal acquisition and processing were developed in this paper. It has been successfully applied to signal acquisition and processing in many transient introduction techniques on-line hyphenated with multi-channel ICP-AES.

  11. Characterization of Novel HIV-1 Intersubtype CRF01_AE/C and A1/C Recombinants from India

    PubMed Central

    Pandey, Sudhanshu Shekhar; Thakar, Madhuri

    2015-01-01

    We report here three novel HIV-1 intersubtype recombinants from India. One among those is a recombinant between subtype C and CRF01_AE and another two between A1 and C. A recombinant virus with CRF01_AE is reported for the first time from India. PMID:26294622

  12. AE index forecast at different time scales through an ANN algorithm based on L1 IMF and plasma measurements

    NASA Astrophysics Data System (ADS)

    Pallocchia, G.; Amata, E.; Consolini, G.; Marcucci, M. F.; Bertello, I.

    2008-02-01

    The AE index is known to have two main components, one directly driven by the solar wind and the other related to the magnetotail unloading process. As regards the role played by the IMF and solar wind parameters, recently several authors used artificial neural networks (ANN) to forecast AE from solar wind data. Following this track, in this paper we present a study of the AE forecast at different time scales, from 5 min to 1 h, in order to check whether the performance of the ANN prediction varies significantly as a function of the AE time resolution.The study is based on a new ANN Elman network with Bz (in GSM) and Vx as inputs, one hidden layer containing four neurons, four context units and one output neuron. We find that the forecast AE values, during disturbed AE periods, result to be always smaller than the experimental values; on the other hand, the algorithm performance improves as the time scale increases, i.e. the total standard deviation (calculated over a test data set) between the forecast and the Kyoto AE decreases as the averaging time increases. Under the hypothesis that this decrease follows an exponential law, we find that the 1 h scale normalised standard deviation is 0.975, very close to the asymptotic value of 0.95 for an infinite averaging time. We interpret our results in the sense that the unloading component of the AE variations cannot be predicted from IMF and solar wind parameters only.

  13. 75 FR 8326 - AES ES Westover, LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes Request...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-24

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission AES ES Westover, LLC; Supplemental Notice That Initial Market- Based Rate... notice in the above-referenced proceeding of AES ES Westover, LLC's application for market-based...

  14. 42 CFR 84.153 - Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements. 84.153 Section 84.153 Public Health PUBLIC HEALTH SERVICE... A and Type AE supplied-air respirators; minimum requirements. (a) Airflow resistance will...

  15. 42 CFR 84.153 - Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements. 84.153 Section 84.153 Public Health PUBLIC HEALTH SERVICE... A and Type AE supplied-air respirators; minimum requirements. (a) Airflow resistance will...

  16. 76 FR 39868 - AES Thames, L.L.C.; Supplemental Notice That Initial Market-Based Rate Filing Includes Request...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-07

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission AES Thames, L.L.C.; Supplemental Notice That Initial Market-Based Rate...-referenced proceeding of AES Thames, LLC's application for market-based rate authority, with an...

  17. 19 CFR 192.12 - Criteria for denial of applications requesting AES post-departure (Option 4) filing status...

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... Regulations (15 CFR 30.7(d)); (2) The applicant has a history of non-compliance with export regulations (e.g... 19 Customs Duties 2 2010-04-01 2010-04-01 false Criteria for denial of applications requesting AES...) EXPORT CONTROL Filing of Export Information Through the Automated Export System (AES) § 192.12...

  18. 77 FR 71189 - AES Beaver Valley, LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission AES Beaver Valley, LLC; Supplemental Notice That Initial Market- Based Rate...-referenced proceeding, of AES Beaver Valley, LLC's application for market-based rate authority, with...

  19. The predominant cluster of CRF01_AE circulating among newly diagnosed HIV-1-positive people in Anhui Province, China.

    PubMed

    Wu, Jianjun; Shen, Yuelan; Zhong, Ping; Feng, Yi; Xing, Hui; Jin, Lin; Qin, Yizu; Liu, Aiwen; Miao, Lifeng; Cui, Lili; Su, Bin; Guo, Hongxiong

    2015-09-01

    CRF01_AE, which has led a new epidemic in many provinces in China and has displayed complex characteristics, has now evolved into multiple clusters in China. Some clusters often circulate in specific regions or among specific risk populations in China. To better determine the characteristics of CRF01_AE circulating in Anhui Province, we analyzed CRF01_AE based on gag and pol sequences. Our results showed that CRF01_AE circulating in Anhui Province was clearly divided into three clusters. Cluster 1 covered 90% of the sequences in all CRF01_AE. Among Cluster 1, the sequences from men who have sex with men (MSM) and heterosexuals were interwoven. It is suggested that MSM may play a bridge role in transmitting HIV-1 among the different risk groups.

  20. Realization and optimization of AES algorithm on the TMS320DM6446 based on DaVinci technology

    NASA Astrophysics Data System (ADS)

    Jia, Wen-bin; Xiao, Fu-hai

    2013-03-01

    The application of AES algorithm in the digital cinema system avoids video data to be illegal theft or malicious tampering, and solves its security problems. At the same time, in order to meet the requirements of the real-time, scene and transparent encryption of high-speed data streams of audio and video in the information security field, through the in-depth analysis of AES algorithm principle, based on the hardware platform of TMS320DM6446, with the software framework structure of DaVinci, this paper proposes the specific realization methods of AES algorithm in digital video system and its optimization solutions. The test results show digital movies encrypted by AES128 can not play normally, which ensures the security of digital movies. Through the comparison of the performance of AES128 algorithm before optimization and after, the correctness and validity of improved algorithm is verified.

  1. Loss of the AE3 Anion Exchanger in a Hypertrophic Cardiomyopathy Model Causes Rapid Decompensation and Heart Failure

    PubMed Central

    Al Moamen, Nabeel J.; Prasad, Vikram; Bodi, Ilona; Miller, Marian L.; Neiman, Michelle L.; Lasko, Valerie M.; Alper, Seth L.; Wieczorek, David F.; Lorenz, John N.; Shull, Gary E.

    2010-01-01

    The AE3 Cl−/HCO3− exchanger is abundantly expressed in the sarcolemma of cardiomyocytes, where it mediates Cl−-uptake and HCO3−-extrusion. Inhibition of AE3-mediated Cl−/HCO3− exchange has been suggested to protect against cardiac hypertrophy; however, other studies indicate that AE3 might be necessary for optimal cardiac function. To test these hypotheses we crossed AE3-null mice, which appear phenotypically normal, with a hypertrophic cardiomyopathy mouse model carrying a Glu180Gly mutation in α–tropomyosin (TM180). Loss of AE3 had no effect on hypertrophy; however, survival of TM180/AE3 double mutants was sharply reduced compared with TM180 single mutants. Analysis of cardiac performance revealed impaired cardiac function in TM180 and TM180/AE3 mutants. TM180/AE3 double mutants were more severely affected and exhibited little response to β-adrenergic stimulation, a likely consequence of their more rapid progression to heart failure. Increased expression of calmodulin-dependent kinase II and protein phosphatase 1 and differences in methylation and localization of protein phosphatase 2A were observed, but were similar in single and double mutants. Phosphorylation of phospholamban on Ser16 was sharply increased in both single and double mutants relative to wild-type hearts under basal conditions, leading to reduced reserve capacity for β-adrenergic stimulation of phospholamban phosphorylation. Imaging analysis of isolated myocytes revealed reductions in amplitude and decay of Ca2+ transients in both mutants, with greater reductions in TM180/AE3 mutants, consistent with the greater severity of their heart failure phenotype. Thus, in the TM180 cardiomyopathy model, loss of AE3 had no apparent anti-hypertrophic effect and led to more rapid decompensation and heart failure. PMID:21056571

  2. Genome discrimination by in situ hybridization in Icelandic species of Elymus and Elytrigia (Poaceae: Triticeae).

    PubMed

    Orgaard, M; Anamthawat-Jónsson, K

    2001-04-01

    The genome constitution of Icelandic Elymus caninus, E. alaskanus, and Elytrigia repens was examined by fluorescence in situ hybridization using genomic DNA and selected cloned sequences as probes. Genomic in situ hybridization (GISH) of Hordeum brachyantherum ssp. californicum (diploid, H genome) probe confirmed the presence of an H genome in the two tetraploid Elymus species and identified its presence in the hexaploid Elytrigia repens. The H chromosomes were painted uniformly except for some chromosomes of Elytrigia repens which showed extended unlabelled pericentromeric and subterminal regions. A mixture of genomic DNA from H. marinum ssp. marinum (diploid, Xa genome) and H. murinum ssp. leporinum (tetraploid, Xu genome) did not hybridize to chromosomes of the Elymus species or Elytrigia repens, confirming that these genomes were different from the H genome. The St genomic probe from Pseudoroegneria spicata (diploid) did not discriminate between the genomes of the Elymus species, whereas it produced dispersed and spotty hybridization signals most likely on the two St genomes of Elytrigia repens. Chromosomes of the two genera Elymus and Elytrigia showed different patterns of hybridization with clones pTa71 and pAes41, while clones pTa1 and pSc119.2 hybridized only to Elytrigia chromosomes. Based on FISH with these genomic and cloned probes, the two Elymus species are genomically similar, but they are evidently different from Elytrigia repens. Therefore the genomes of Icelandic Elymus caninus and E. alaskanus remain as StH, whereas the genomes of Elytrigia repens are proposed as XXH.

  3. 3AE8: monoclonal antibody defining inflammatory macrophages in three species.

    PubMed

    Chen, Z; Yen, S E; Walker, W S

    1984-01-01

    A mouse monoclonal antibody (MAb 3AE8) of the IgG1 isotype was prepared against rabbit splenocytes and was found by indirect immunofluorescence and direct binding assays to react, in the rabbit, primarily with oil-induced peritoneal exudate macrophages (PEM phi). This MAb did not bind to rabbit T cells, B cells, polymorphonuclear leukocytes, or resident alveolar or peritoneal M phi but it did bind to a subpopulation of rabbit splenocytes with surface characteristics of null cells. The antibody also recognized mouse and rat PEM phi as well as the murine M phi cell lines P388D1 and IC-21. Consistent with findings in the rabbit, it did not bind to M phi obtained from the peritoneal cavities of rats or mice. The addition of MAb 3AE8 to mouse PEM phi caused a marked enhancement in the phagocytic uptake of erythrocyte target cells sensitized with a mouse antierythrocyte antiserum. PMID:6480022

  4. Radio continuum observations of the Herbig Ae/Be stars HD 163296 and HR 5999

    NASA Technical Reports Server (NTRS)

    Brown, D. A.; Perez, M. R.; Yusef-Zadeh, F.

    1993-01-01

    Very Large Array (VLA) observations of the two bright Herbig Ae/Be stars HD 163296 and HR 5999 have been carried out at lambda 3.6 and 20 cm. We report the detection of a radio source at lambda 3.6 cm that may be associated with HD 163296. From the peak flux density of 0.39 mJy/beam area, we estimate a mass-loss rate of 1.8 x 10(exp -8) solar mass/yr if the flux is due to free-free emission in an ionized wind with spherical symmetry, assuming a terminal wind velocity of 200 km/s. HR 5999 was not detected at either wavelength. We discuss the results in terms of the stellar-driven and accretion-driven scenarios for line and wind formation in Herbig Ae/Be stars.

  5. Modified Redundancy based Technique—a New Approach to Combat Error Propagation Effect of AES

    NASA Astrophysics Data System (ADS)

    Sarkar, B.; Bhunia, C. T.; Maulik, U.

    2012-06-01

    Advanced encryption standard (AES) is a great research challenge. It has been developed to replace the data encryption standard (DES). AES suffers from a major limitation of error propagation effect. To tackle this limitation, two methods are available. One is redundancy based technique and the other one is bite based parity technique. The first one has a significant advantage of correcting any error on definite term over the second one but at the cost of higher level of overhead and hence lowering the processing speed. In this paper, a new approach based on the redundancy based technique is proposed that would certainly speed up the process of reliable encryption and hence the secured communication.

  6. A SOPC-BASED Evaluation of AES for 2.4 GHz Wireless Network

    NASA Astrophysics Data System (ADS)

    Ken, Cai; Xiaoying, Liang

    In modern systems, data security is needed more than ever before and many cryptographic algorithms are utilized for security services. Wireless Sensor Networks (WSN) is an example of such technologies. In this paper an innovative SOPC-based approach for the security services evaluation in WSN is proposed that addresses the issues of scalability, flexible performance, and silicon efficiency for the hardware acceleration of encryption system. The design includes a Nios II processor together with custom designed modules for the Advanced Encryption Standard (AES) which has become the default choice for various security services in numerous applications. The objective of this mechanism is to present an efficient hardware realization of AES using very high speed integrated circuit hardware description language (Verilog HDL) and expand the usability for various applications. As compared to traditional customize processor design, the mechanism provides a very broad range of cost/performance points.

  7. Laser guide star adaptive optics imaging polarimetry of Herbig Ae/Be stars.

    PubMed

    Perrin, Marshall D; Graham, James R; Kalas, Paul; Lloyd, James P; Max, Claire E; Gavel, Donald T; Pennington, Deanna M; Gates, Elinor L

    2004-02-27

    We have used laser guide star adaptive optics and a near-infrared dual-channel imaging polarimeter to observe light scattered in the circumstellar environment of Herbig Ae/Be stars on scales of 100 to 300 astronomical units. We revealed a strongly polarized, biconical nebula 10 arc seconds (6000 astronomical units) in diameter around the star LkHalpha 198 and also observed a polarized jet-like feature associated with the deeply embedded source LkHalpha 198-IR. The star LkHalpha 233 presents a narrow, unpolarized dark lane consistent with an optically thick circumstellar disk blocking our direct view of the star. These data show that the lower-mass T Tauri and intermediate mass Herbig Ae/Be stars share a common evolutionary sequence.

  8. BOREAS AES Five-Day Averaged Surface Meteorological and Upper Air Data

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Strub, Richard; Newcomer, Jeffrey A.

    2000-01-01

    The Canadian Atmospheric Environment Service (AES) provided BOREAS with hourly and daily surface meteorological data from 23 of the AES meteorological stations located across Canada and upper air data from 1 station at The Pas, Manitoba. Due to copyright restrictions on the full resolution surface meteorological data, this data set contains 5-day average values for the surface parameters. The upper air data are provided in their full resolution form. The 5-day averaging was performed in order to create a data set that could be publicly distributed at no cost. Temporally, the surface meteorological data cover the period of January 1975 to December 1996 and the upper air data cover the period of January 1961 to November 1996. The data are provided in tabular ASCII files, and are classified as AFM-staff data. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

  9. [Application of kalman filtering based on wavelet transform in ICP-AES].

    PubMed

    Qin, Xia; Shen, Lan-sun

    2002-12-01

    Kalman filtering is a recursive algorithm, which has been proposed as an attractive alternative to correct overlapping interferences in ICP-AES. However, the noise in ICP-AES contaminates the signal arising from the analyte and hence limits the accuracy of kalman filtering. Wavelet transform is a powerful technique in signal denoising due to its multi-resolution characteristics. In this paper, first, the effect of noise on kalman filtering is discussed. Then we apply the wavelet-transform-based soft-thresholding as the pre-processing of kalman filtering. The simulation results show that the kalman filtering based on wavelet transform can effectively reduce the noise and increase the accuracy of the analysis. PMID:12914186

  10. Radio continuum observations of the Herbig Ae/Be stars HD 163296 and HR 5999

    NASA Astrophysics Data System (ADS)

    Brown, D. A.; Perez, M. R.; Yusef-Zadeh, F.

    1993-11-01

    Very Large Array (VLA) observations of the two bright Herbig Ae/Be stars HD 163296 and HR 5999 have been carried out at lambda 3.6 and 20 cm. We report the detection of a radio source at lambda 3.6 cm that may be associated with HD 163296. From the peak flux density of 0.39 mJy/beam area, we estimate a mass-loss rate of 1.8 x 10-8 solar mass/yr if the flux is due to free-free emission in an ionized wind with spherical symmetry, assuming a terminal wind velocity of 200 km/s. HR 5999 was not detected at either wavelength. We discuss the results in terms of the stellar-driven and accretion-driven scenarios for line and wind formation in Herbig Ae/Be stars.

  11. Integrated Design for Marketing and Manufacturing team: An examination of LA-ICP-AES in a mobile configuration. Final report

    SciTech Connect

    Not Available

    1994-05-01

    The Department of Energy (DOE) has identified the need for field-deployable elemental analysis devices that are safer, faster, and less expensive than the fixed laboratory procedures now used to screen hazardous waste sites. As a response to this need, the Technology Integration Program (TIP) created a mobile, field-deployable laser ablation-inductively coupled plasma-atomic emission spectrometry (LA-ICP-AES) sampling and analysis prototype. Although the elemental. screening prototype has been successfully field-tested, continued marketing and technical development efforts are required to transfer LA-ICP-AES technology to the commercial sector. TIP established and supported a student research and design group called the Integrated Design for Marketing and Manufacturing (IDMM) team to advance the technology transfer of mobile, field-deployable LA-ICP-AES. The IDMM team developed a conceptual design (which is detailed in this report) for a mobile, field-deployable LA-ICP-AES sampling and analysis system, and reports the following findings: Mobile, field-deployable LA-ICP-AES is commercially viable. Eventual regulatory acceptance of field-deployable LA-ICP-AES, while not a simple process, is likely. Further refinement of certain processes and components of LA-ICP-AES will enhance the device`s sensitivity and accuracy.

  12. Validation of the French version of the Acceptability E-scale (AES) for mental E-health systems.

    PubMed

    Micoulaud-Franchi, Jean-Arthur; Sauteraud, Alain; Olive, Jérôme; Sagaspe, Patricia; Bioulac, Stéphanie; Philip, Pierre

    2016-03-30

    Despite the increasing use of E-health systems for mental-health organizations, there is a lack of psychometric tools to evaluate their acceptability by patients with mental disorders. Thus, this study aimed to translate and validate a French version of the Acceptability E-scale (AES), a 6-item self-reported questionnaire that evaluates the extent to which patients find E-health systems acceptable. A forward-backward translation of the AES was performed. The psychometric properties of the French AES version, with construct validity, internal structural validity and external validity (Pearson's coefficient between AES scores and depression symptoms on the Beck Depression Inventory II) were analyzed. In a sample of 178 patients (mean age=46.51 years, SD=12.91 years), the validation process revealed satisfactory psychometric properties: factor analysis revealed two factors: "Satisfaction" (3 items) and "Usability" (3 items) and Cronbach's alpha was 0.7. No significant relation was found between AES scores and depression symptoms. The French version of the AES revealed a two-factor scale that differs from the original version. In line with the importance of acceptability in mental health and with a view to E-health systems for patients with mental disorders, the use of the AES in psychiatry may provide important information on acceptability (i.e., satisfaction and usability).

  13. Herbig Ae/Be stars - Intermediate-mass stars surrounded by massive circumstellar accretion disks

    NASA Technical Reports Server (NTRS)

    Hillenbrand, Lynne A.; Strom, Stephen E.; Vrba, Frederick J.; Keene, Jocelyn

    1992-01-01

    The proposition that Herbig Ae/Be stars are young intermediate mass stars surrounded by optically thick accretion disks is explored. From a study of 47 such objects, a subset of 30 stars is identified whose spectral energy distributions can be interpreted convincingly in terms of pre-main sequence stars surrounded by massive optically thick circumstellar accretion disks. Constraints on the physical properties of the disks, such as size, mass, accretion rate, lifetime, and radial structure are derived from the photometric data.

  14. Near-infrared (J, H, K) imaging of Herbig Ae/Be stars

    NASA Astrophysics Data System (ADS)

    Li, Wenbin; Evans, Neal J., II; Harvey, Paul M.; Colome, Cecilia

    1994-09-01

    Near-infrared (J, H, K) images were obtained for 16 Herbig Ae/Be stars. The primary goal was to determine the contributions by circumstellar nebulae and nearby sources to near-infrared photometry carried out with large beams. Quasi-simultaneous photometric results were obtained with small apertures. The emission toward five Herbig Ae/Be stars is extended, including all four Group II sources in our sample (Hillebrand et al. 1992); 13 objects have nearby sources (within 10 sec separation). However, the extended emission and nearby sources are too faint to affect previous photometry significantly. The surface brightness profiles of most of the nebulae can be explained by reflection nebulae which scatter the light from the central star/disk systems with single, isotropic scattering processes. The exception is Par 21, which may require emission from very small grains. The color-color diagram, making use of our new photometry, essentially agrees with the results of Lada & Adams (1992). The Group II objects in our sample tend to have extended emission more frequently than do Group I objects, supporting the suggestion of Hillebrand et al. that Group II sources are more affected by circumstellar envelopes. However, most of the near-infrared emission comes from the central (less than or = 6 sec) regions. This upper limit is still much larger than the expected size of accretion disks. Possible envelope effects could not be ruled out for most Herbig Ae/Be stars with unresolved emission. The images do not clearly favor very small, thermally emitting grains as the origin of the near-infrared emission. The problem still exists of how to explain the observed peaks near 3 sec in the spectral energy distributions of Herbig Ae/Be stars. The possible effects of envelopes and companions are addressed.

  15. Desktop system for accounting, audit, and research in A&E.

    PubMed

    Taylor, C J; Brain, S G; Bull, F; Crosby, A C; Ferguson, D G

    1997-03-01

    The development of a database for audit, research, and accounting in accident and emergency (A&E) is described. The system uses a desktop computer, an optical scanner, sophisticated optical mark reader software, and workload management data. The system is highly flexible, easy to use, and at a cost of around 16,000 pounds affordable for larger departments wishing to move towards accounting. For smaller departments, it may be an alternative to full computerisation.

  16. The stability of calibration standards for ICP/AES analysis: Six-month study

    SciTech Connect

    Huff, E.A.; Huff, D.R.

    1992-05-01

    The stability of instrument calibration standards for Inductively Coupled Plasma/Atomic Emission Spectrometric (ICP/AES) analysis was studied over a six-month period. Data were obtained as functions of analyte concentration, acid type, and acidity. The impact of acid concentration on signal-to-background ratios (S/B) was also assessed. The results show that analytes maintain their integrity over extended periods with appropriate inorganic acid preservatives. Thus, frequent standard preparations become unnecessary to obtain valid analytical data.

  17. A versatile substrate design for LEED and AES studies in uhv.

    NASA Technical Reports Server (NTRS)

    Holloway, P. H.; Hudson, J. B.

    1972-01-01

    A substrate design is described that incorporates a single crystal disk into an electrically isolated, electron bombardment heated mount. Electron and photon leakage from the bombarding filament are prevented, and LEED and AES may be used at elevated temperatures. A cold finger, thermally coupled to the mount, decreases the time lost between cleaning the crystal and cooling it to the desired observation temperature. The cold finger also allows observation at temperatures below ambient.

  18. Reconstituting the epidemic history of mono lineage of HIV-1 CRF01_AE in Guizhou province, Southern China.

    PubMed

    Zeng, Haiyan; Sun, Binlian; Li, Lingnuo; Li, Yanpeng; Liu, Yong; Xiao, Yao; Jiang, Yan; Yang, Rongge

    2014-08-01

    Guizhou province, located between border provinces and Central province of China, plays a crucial role in the transmission of HIV-1, implying it is important to monitor the epidemic of HIV-1 in this region. Available HIV-1 infected patients' plasma (n=78) were collected from Tongren city, Eastern Guizhou. Full-length gag, partial pol and env gene sequences were amplified and analyzed using phylogenetic, recombinant and Bayesian molecular clock approaches. Phylogenetic and recombinant analyses showed that CRF01_AE predominated among injecting drug users and heterosexuals in Tongren city with 85.9% proportion, it was followed by B' (5.1%), CRF07_BC (3.8%), CRF08_BC (3.8%), and B (1.3%). Moreover, 98.5% of CRF01_AE strains belonged to the distinct lineage CRF01_AE-v previously found in Guangxi province. To infer the most probable origin of CRF01_AE-v in Guizhou province, we download all available full length of CRF01_AE gag, pol and env gene region sequences from China in Los Alamos HIV sequence database. Phylodynamic and phylogeographic analyses revealed that the expanding CRF01_AE-v epidemic in Guizhou province was the result of local epidemic driven by multiple independent introductions of CRF01_AE-v strains from Guangxi province in early 2000s. High prevalence of CRF01_AE in Guizhou province may bridge the epidemic to Central China. It provides a new insight for the understanding of HIV-1 epidemic in Guizhou province and makes the evolutionary history of CRF01_AE in China more intact.

  19. On the molecular structure of the amylopectin fraction isolated from "high-amylose" ae maize starches.

    PubMed

    Peymanpour, Ghazal; Marcone, Massimo; Ragaee, Sanaa; Tetlow, Ian; Lane, Christopher C; Seetharaman, Koushik; Bertoft, Eric

    2016-10-01

    The amylopectin fractions from starch of a series of amylose-extender (ae) maize samples (HYLON(®) V, VII and VIII starches) were isolated and analysed for their molecular composition and structure. The fractions from all samples contained both a high and a low molecular weight fraction (HMF and LMF), of which LMF increased with the amylose content of the starch and appeared to have substantially more of long chains than HMF. A normal amylose-containing maize starch (NMS), which served as a reference sample, contained very little LMF, which suggested that LMF was the inherent result of the effect of the loss of starch branching enzyme IIb activity in the ae mutants. Clusters were isolated from the amylopectin fractions using Bacillus amyloliquefaciens α-amylase, which effectively hydrolyses long internal chain segments between clusters. During the hydrolysis process, clearly more of small dextrins were released from the ae starches in comparison to NMS. It appeared that some of these small dextrins did not precipitate in methanol together with the majority of the clusters. Nevertheless, isolated clusters from the HYLON starch samples were smaller than in NMS and the clusters possessed a lower density of branches with longer chains. The composition of small, branched building blocks was also clearly different: HYLON starch samples possessed much more of single-branched blocks and less multiple-branched blocks than NMS. PMID:27296443

  20. A Procedure to Determine the Optimal Sensor Positions for Locating AE Sources in Rock Samples

    NASA Astrophysics Data System (ADS)

    Duca, S.; Occhiena, C.; Sambuelli, L.

    2015-03-01

    Within a research work aimed to better understand frost weathering mechanisms of rocks, laboratory tests have been designed to specifically assess a theoretical model of crack propagation due to ice segregation process in water-saturated and thermally microcracked cubic samples of Arolla gneiss. As the formation and growth of microcracks during freezing tests on rock material is accompanied by a sudden release of stored elastic energy, the propagation of elastic waves can be detected, at the laboratory scale, by acoustic emission (AE) sensors. The AE receiver array geometry is a sensitive factor influencing source location errors, for it can greatly amplify the effect of small measurement errors. Despite the large literature on the AE source location, little attention, to our knowledge, has been paid to the description of the experimental design phase. As a consequence, the criteria for sensor positioning are often not declared and not related to location accuracy. In the present paper, a tool for the identification of the optimal sensor position on a cubic shape rock specimen is presented. The optimal receiver configuration is chosen by studying the condition numbers of each of the kernel matrices, used for inverting the arrival time and finding the source location, and obtained for properly selected combinations between sensors and sources positions.

  1. Applications of high resolution ICP-AES in the nuclear industry

    SciTech Connect

    Johnson, S.G.; Giglio, J.J.; Goodall, P.S.; Cummings, D.G.

    1998-07-01

    Application of high resolution ICP-AES to selected problems of importance in the nuclear industry is a growing field. The advantages in sample preparation time, waste minimization and equipment cost are considerable. Two examples of these advantages are presented in this paper, burnup analysis of spent fuel and analysis of major uranium isotopes. The determination of burnup, an indicator of fuel cycle efficiency, has been accomplished by the determination of {sup 139}La by high resolution inductively coupled plasma atomic emission spectroscopy (HR-ICP-AES). Solutions of digested samples of reactor fuel rods were introduced into a shielded glovebox housing an inductively coupled plasma (ICP) and the resulting atomic emission transmitted to a high resolution spectrometer by a 31 meter fiber optic bundle. Total and isotopic U determination by thermal ionization mass spectrometry (TIMS) is presented to allow for the calculation of burnup for the samples. This method of burnup determination reduces the time, material, sample handling and waste generated associated with typical burnup determinations which require separation of lanthanum from the other fission products with high specific activities. Work concerning an alternative burnup indicator, {sup 236}U, is also presented for comparison. The determination of {sup 235}U:{sup 238}U isotope ratios in U-Zr fuel alloys is also presented to demonstrate the versatility of HR-ICP-AES.

  2. LINFLUX-AE: A Turbomachinery Aeroelastic Code Based on a 3-D Linearized Euler Solver

    NASA Technical Reports Server (NTRS)

    Reddy, T. S. R.; Bakhle, M. A.; Trudell, J. J.; Mehmed, O.; Stefko, G. L.

    2004-01-01

    This report describes the development and validation of LINFLUX-AE, a turbomachinery aeroelastic code based on the linearized unsteady 3-D Euler solver, LINFLUX. A helical fan with flat plate geometry is selected as the test case for numerical validation. The steady solution required by LINFLUX is obtained from the nonlinear Euler/Navier Stokes solver TURBO-AE. The report briefly describes the salient features of LINFLUX and the details of the aeroelastic extension. The aeroelastic formulation is based on a modal approach. An eigenvalue formulation is used for flutter analysis. The unsteady aerodynamic forces required for flutter are obtained by running LINFLUX for each mode, interblade phase angle and frequency of interest. The unsteady aerodynamic forces for forced response analysis are obtained from LINFLUX for the prescribed excitation, interblade phase angle, and frequency. The forced response amplitude is calculated from the modal summation of the generalized displacements. The unsteady pressures, work done per cycle, eigenvalues and forced response amplitudes obtained from LINFLUX are compared with those obtained from LINSUB, TURBO-AE, ASTROP2, and ANSYS.

  3. Finite element modelling of ultrasound, with reference to transducers and AE waves.

    PubMed

    Hill, R; Forsyth, S A; Macey, P

    2004-04-01

    Finite element (FE) modelling has a role to play in simulating elastic wave propagation associated with structural vibrations, acoustic phenomena and ultrasound problems. In this work we have used the PAFEC software [PAFEC finite element software PACSYS, Strelley Hall, Nottingham, NG8 6PE, UK]. With the advent of increased computer power and greater availability of software these simulations have become more readily available and will provide improved insight into wave propagation problems. Simulations have been undertaken of transient wave propagation in steel plates with an attached simple resonant transducer. This simulates acoustic emission (AE) propagation in plate like structures relevant to many industrial applications. Simulations for short propagation distances suggest the resonant transducer voltage signal carries information on the plate-waves propagating in the structure, overlaid with the piezoelectric resonance and some information might be extracted from the transducer signal. Looking at the wave propagation information alone, a great deal of variability is seen in the displacement profile for different source types, orientations and locations. Although users have expressed a need for calibration of the AE detection process, this idea remains problematic since the complete generation and detection system has the features of a chaotic system. Using FE modelling a method of "point calibration" might be available, for some specific AE applications such as crack growth along known paths. PMID:15047294

  4. Towards leakage resiliency: memristor-based AES design for differential power attack mitigation

    NASA Astrophysics Data System (ADS)

    Khedkar, Ganesh; Donahue, Colin; Kudithipudi, Dhireesha

    2014-05-01

    Side-channel attacks (SCAs), specifically differential power attacks (DPA), target hardware vulnerabilities of cryptosystems. Next generation computing systems, integrated with emerging technologies such as RRAM, offer unique opportunities to mitigate DPAs with their inherent device characteristics. We propose two different approaches to mitigate DPA attacks using memristive hardware. The first approach, obfuscates the power profile using dual RRAM modules. The power profile stays almost uniform for any given data access. This is achieved by realizing a memory and its complementary module in RRAM hardware. Balancing logic, which ensures the parallel access, is implemented in CMOS. The power consumed with the dual-RRAM balancing is an order lower than the corresponding pure CMOS implementation. The second exploratory approach, uses a novel neuromemristive architecture to compute an AES transformation and mitigate DPAs. Both the proposed approaches were tested on a 128-bit AES algorithm. A customized simulation framework, integrating CAD tools, is developed to mount the DPA attacks. In both the designs, the attack mounted on the baseline architectures (CMOS only) was successful and full key was recovered. However, DPA attacks mounted on the dual RRAM modules and neuromemristive hardware modules of an AES cryptoprocessor yielded no successful keys, demonstrating their resiliency to DPA attacks.

  5. An AES chip with DPA resistance using hardware-based random order execution

    NASA Astrophysics Data System (ADS)

    Bo, Yu; Xiangyu, Li; Cong, Chen; Yihe, Sun; Liji, Wu; Xiangmin, Zhang

    2012-06-01

    This paper presents an AES (advanced encryption standard) chip that combats differential power analysis (DPA) side-channel attack through hardware-based random order execution. Both decryption and encryption procedures of an AES are implemented on the chip. A fine-grained dataflow architecture is proposed, which dynamically exploits intrinsic byte-level independence in the algorithm. A novel circuit called an HMF (Hold-Match-Fetch) unit is proposed for random control, which randomly sets execution orders for concurrent operations. The AES chip was manufactured in SMIC 0.18 μm technology. The average energy for encrypting one group of plain texts (128 bits secrete keys) is 19 nJ. The core area is 0.43 mm2. A sophisticated experimental setup was built to test the DPA resistance. Measurement-based experimental results show that one byte of a secret key cannot be disclosed from our chip under random mode after 64000 power traces were used in the DPA attack. Compared with the corresponding fixed order execution, the hardware based random order execution is improved by at least 21 times the DPA resistance.

  6. Ae4 (Slc4a9) is an electroneutral monovalent cation-dependent Cl-/HCO3- exchanger.

    PubMed

    Peña-Münzenmayer, Gaspar; George, Alvin T; Shull, Gary E; Melvin, James E; Catalán, Marcelo A

    2016-05-01

    Ae4 (Slc4a9) belongs to the Slc4a family of Cl(-)/HCO3 (-) exchangers and Na(+)-HCO3 (-) cotransporters, but its ion transport cycle is poorly understood. In this study, we find that native Ae4 activity in mouse salivary gland acinar cells supports Na(+)-dependent Cl(-)/HCO3 (-) exchange that is comparable with that obtained upon heterologous expression of mouse Ae4 and human AE4 in CHO-K1 cells. Additionally, whole cell recordings and ion concentration measurements demonstrate that Na(+) is transported by Ae4 in the same direction as HCO3 (-) (and opposite to that of Cl(-)) and that ion transport is not associated with changes in membrane potential. We also find that Ae4 can mediate Na(+)-HCO3 (-) cotransport-like activity under Cl(-)-free conditions. However, whole cell recordings show that this apparent Na(+)-HCO3 (-) cotransport activity is in fact electroneutral HCO3 (-)/Na(+)-HCO3 (-) exchange. Although the Ae4 anion exchanger is thought to regulate intracellular Cl(-) concentration in exocrine gland acinar cells, our thermodynamic calculations predict that the intracellular Na(+), Cl(-), and HCO3 (-) concentrations required for Ae4-mediated Cl(-) influx differ markedly from those reported for acinar secretory cells at rest or under sustained stimulation. Given that K(+) ions share many properties with Na(+) ions and reach intracellular concentrations of 140-150 mM (essentially the same as extracellular [Na(+)]), we hypothesize that Ae4 could mediate K(+)-dependent Cl(-)/HCO3 (-) exchange. Indeed, we find that Ae4 mediates Cl(-)/HCO3 (-) exchange activity in the presence of K(+) as well as Cs(+), Li(+), and Rb(+) In summary, our results strongly suggest that Ae4 is an electroneutral Cl(-)/nonselective cation-HCO3 (-) exchanger. We postulate that the physiological role of Ae4 in secretory cells is to promote Cl(-) influx in exchange for K(+)(Na(+)) and HCO3 (-) ions.

  7. Low Cost Design of an Advanced Encryption Standard (AES) Processor Using a New Common-Subexpression-Elimination Algorithm

    NASA Astrophysics Data System (ADS)

    Chen, Ming-Chih; Hsiao, Shen-Fu

    In this paper, we propose an area-efficient design of Advanced Encryption Standard (AES) processor by applying a new common-expression-elimination (CSE) method to the sub-functions of various transformations required in AES. The proposed method reduces the area cost of realizing the sub-functions by extracting the common factors in the bit-level XOR/AND-based sum-of-product expressions of these sub-functions using a new CSE algorithm. Cell-based implementation results show that the AES processor with our proposed CSE method has significant area improvement compared with previous designs.

  8. Ae4 (Slc4a9) is an electroneutral monovalent cation-dependent Cl−/HCO3− exchanger

    PubMed Central

    Peña-Münzenmayer, Gaspar; George, Alvin T.; Shull, Gary E.; Melvin, James E.

    2016-01-01

    Ae4 (Slc4a9) belongs to the Slc4a family of Cl−/HCO3− exchangers and Na+-HCO3− cotransporters, but its ion transport cycle is poorly understood. In this study, we find that native Ae4 activity in mouse salivary gland acinar cells supports Na+-dependent Cl−/HCO3− exchange that is comparable with that obtained upon heterologous expression of mouse Ae4 and human AE4 in CHO-K1 cells. Additionally, whole cell recordings and ion concentration measurements demonstrate that Na+ is transported by Ae4 in the same direction as HCO3− (and opposite to that of Cl−) and that ion transport is not associated with changes in membrane potential. We also find that Ae4 can mediate Na+-HCO3− cotransport–like activity under Cl−-free conditions. However, whole cell recordings show that this apparent Na+-HCO3− cotransport activity is in fact electroneutral HCO3−/Na+-HCO3− exchange. Although the Ae4 anion exchanger is thought to regulate intracellular Cl− concentration in exocrine gland acinar cells, our thermodynamic calculations predict that the intracellular Na+, Cl−, and HCO3− concentrations required for Ae4-mediated Cl− influx differ markedly from those reported for acinar secretory cells at rest or under sustained stimulation. Given that K+ ions share many properties with Na+ ions and reach intracellular concentrations of 140–150 mM (essentially the same as extracellular [Na+]), we hypothesize that Ae4 could mediate K+-dependent Cl−/HCO3− exchange. Indeed, we find that Ae4 mediates Cl−/HCO3− exchange activity in the presence of K+ as well as Cs+, Li+, and Rb+. In summary, our results strongly suggest that Ae4 is an electroneutral Cl−/nonselective cation–HCO3− exchanger. We postulate that the physiological role of Ae4 in secretory cells is to promote Cl− influx in exchange for K+(Na+) and HCO3− ions. PMID:27114614

  9. AE-941, a multifunctional antiangiogenic compound: trials in renal cell carcinoma.

    PubMed

    Bukowski, Ronald M

    2003-08-01

    The therapy of renal cell carcinoma remains a challenge for medical oncologists and urologists. During the past 10 years, the molecular abnormalities occurring in various subtypes of renal cancer, such as clear cell renal carcinoma, have been well described. The genetic abnormalities found in clear cell tumours involve chromosome 3p and, additionally, hypermethylation of the von Hippel-Lindau (VHL) gene can be detected. The VHL protein is involved in the angiogenic cascade in non-hypoxic conditions, and the possible role of mutant or hypermethylated VHL protein in promoting angiogenesis is, therefore, of interest. The majority of patients with renal cell carcinoma who receive treatment, such as IL-2 and/or IFN, fail and develop progressive disease. Therapy is therefore inadequate and novel approaches, such as those inhibiting angiogenesis, are of interest. The agent AE-941 (Neovostat trade mark; AEterna) was developed based on the observation that shark cartilage may contain biologically active inhibitors of angiogenesis. A variety of in vitro and in vivo activities of this preparation have been identified. At the molecular level, AE-941 appears to exhibit four different potential mechanisms of action: modulation of matrix proteases; inhibition of vascular endothelial growth factor binding to its receptor; induction of endothelial cell apoptosis; and stimulation of angiostatin production. The antitumour effects of AE-941 are seen in multiple murine models and involve not only effects on primary tumour growth but also on development of metastases. AE-941 is administered orally and has an excellent toxicity profile. Of interest are the findings in patients with renal cell carcinoma. Preliminary trials in this setting have suggested that responses to AE-941 occur and that patients receiving higher doses of this agent may have improved survival. Based on these preliminary data, a large, multi-institutional, randomised, Phase III trial of this agent has now been

  10. Validation of the new trapped environment AE9/AP9/SPM at low Earth orbit

    NASA Astrophysics Data System (ADS)

    Badavi, Francis F.

    2014-09-01

    The completion of the international space station (ISS) in 2011 has provided the space research community an ideal proving ground for future long duration human activities in space. Ionizing radiation measurements in ISS form the ideal tool for the validation of radiation environmental models, nuclear transport codes and nuclear reaction cross sections. Indeed, prior measurements on the space transportation system (STS; shuttle) provided vital information impacting both the environmental models and the nuclear transport code developments by indicating the need for an improved dynamic model of the low Earth orbit (LEO) trapped environment. Additional studies using thermo-luminescent detector (TLD), tissue equivalent proportional counter (TEPC) area monitors, and computer aided design (CAD) model of earlier ISS configurations, confirmed STS observations that, as input, computational dosimetry requires an environmental model with dynamic and directional (anisotropic) behavior, as well as an accurate six degree of freedom (DOF) definition of the vehicle attitude and orientation along the orbit of ISS. At LEO, a vehicle encounters exposure from trapped particles and attenuated galactic cosmic rays (GCR). Within the trapped field, a challenge arises from properly estimating the amount of exposure acquired. There exist a number of models to define the intensities of the trapped particles during the solar quiet and active times. At active times, solar energetic particles (SEP) generated by solar flare or coronal mass ejection (CME) also contribute to the exposure at high northern and southern latitudes. Among the more established trapped models are the historic and popular AE8/AP8, dating back to the 1980s, the historic and less popular CRRES electron/proton, dating back to 1990s and the recently released AE9/AP9/SPM. The AE9/AP9/SPM model is a major improvement over the older AE8/AP8 and CRRES models. This model is derived from numerous measurements acquired over four

  11. Aquaculture Genomics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genomics chapter covers the basics of genome mapping and sequencing and the current status of several relevant species. The chapter briefly describes the development and use of (cDNA, BAC, etc.) libraries for mapping and obtaining specific sequence information. Other topics include comparative ...

  12. A study of the initial oxidation of evaporated thin films of aluminum by AES, ELS, and ESD

    NASA Technical Reports Server (NTRS)

    Bujor, M.; Larson, L. A.; Poppa, H.

    1982-01-01

    The room temperature, low pressure, oxidation of evaporated aluminum thin films has been studied by AES, ELS, and ESD. ESD was the most sensitive of the three methods to characterize a clean aluminum surface. Two oxidation stages were distinguished in the 0-3000 L oxygen exposure range. Between 0 and 50 L, the chemisorption of oxygen atoms was characterized by a fast decrease of the 67 eV AES Al peak and the 10 eV surface plasmon peak, and by a simultaneous increase of the oxygen AES and ESD signals. After 50 L, a change in slope in all AES and ESD signal variations was attributed to the slow growth of a thin layer of aluminum oxide, which after 3000 L was still only a few angstroms thick.

  13. An unsupervised pattern recognition approach for AE data originating from fatigue tests on polymer-composite materials

    NASA Astrophysics Data System (ADS)

    Doan, D. D.; Ramasso, E.; Placet, V.; Zhang, S.; Boubakar, L.; Zerhouni, N.

    2015-12-01

    This work investigates acoustic emission generated during tension fatigue tests carried out on a carbon fiber reinforced polymer (CFRP) composite specimen. Since massive fatigue data processing, especially noise reduction, remains an important challenge in AE data analysis, a Mahalanobis distance-based noise modeling has been proposed in the present work to tackle this problem. A sequential feature selection based on Davies-Bouldin index has been implemented for fast dimensionality reduction. An unsupervised classifier offline-learned from quasi-static data is then used to classify the data to different AE sources with the possibility to dynamically accommodate with unseen ones. With an efficient proposed noise removal and automatic separation of AE events, this pattern discovery procedure provides an insight into fatigue damage development in composites in the presence of millions of AE events.

  14. Diversity of Long Terminal Repeat Retrotransposon Genome Distribution in Natural Populations of the Wild Diploid Wheat Aegilops speltoides

    PubMed Central

    Hosid, Elena; Brodsky, Leonid; Kalendar, Ruslan; Raskina, Olga; Belyayev, Alexander

    2012-01-01

    The environment can have a decisive influence on the structure of the genome, changing it in a certain direction. Therefore, the genomic distribution of environmentally sensitive transposable elements may vary measurably across a species area. In the present research, we aimed to detect and evaluate the level of LTR retrotransposon intraspecific variability in Aegilops speltoides (2n = 2x = 14), a wild cross-pollinated relative of cultivated wheat. The interretrotransposon amplified polymorphism (IRAP) protocol was applied to detect and evaluate the level of retrotransposon intraspecific variability in Ae. speltoides and closely related species. IRAP analysis revealed significant diversity in TE distribution. Various genotypes from the 13 explored populations significantly differ with respect to the patterns of the four explored LTR retrotransposons (WIS2, Wilma, Daniela, and Fatima). This diversity points to a constant ongoing process of LTR retrotransposon fraction restructuring in populations of Ae. speltoides throughout the species’ range and within single populations in time. Maximum changes were recorded in genotypes from small stressed populations. Principal component analysis showed that the dynamics of the Fatima element significantly differ from those of WIS2, Wilma, and Daniela. In terms of relationships between Sitopsis species, IRAP analysis revealed a grouping with Ae. sharonensis and Ae. longissima forming a separate unit, Ae. speltoides appearing as a dispersed group, and Ae. bicornis being in an intermediate position. IRAP display data revealed dynamic changes in LTR retrotransposon fractions in the genome of Ae. speltoides. The process is permanent and population specific, ultimately leading to the separation of small stressed populations from the main group. PMID:22042572

  15. The L7Ae protein binds to two kink-turns in the Pyrococcus furiosus RNase P RNA.

    PubMed

    Lai, Stella M; Lai, Lien B; Foster, Mark P; Gopalan, Venkat

    2014-12-01

    The RNA-binding protein L7Ae, known for its role in translation (as part of ribosomes) and RNA modification (as part of sn/oRNPs), has also been identified as a subunit of archaeal RNase P, a ribonucleoprotein complex that employs an RNA catalyst for the Mg(2+)-dependent 5' maturation of tRNAs. To better understand the assembly and catalysis of archaeal RNase P, we used a site-specific hydroxyl radical-mediated footprinting strategy to pinpoint the binding sites of Pyrococcus furiosus (Pfu) L7Ae on its cognate RNase P RNA (RPR). L7Ae derivatives with single-Cys substitutions at residues in the predicted RNA-binding interface (K42C/C71V, R46C/C71V, V95C/C71V) were modified with an iron complex of EDTA-2-aminoethyl 2-pyridyl disulfide. Upon addition of hydrogen peroxide and ascorbate, these L7Ae-tethered nucleases were expected to cleave the RPR at nucleotides proximal to the EDTA-Fe-modified residues. Indeed, footprinting experiments with an enzyme assembled with the Pfu RPR and five protein cofactors (POP5, RPP21, RPP29, RPP30 and L7Ae-EDTA-Fe) revealed specific RNA cleavages, localizing the binding sites of L7Ae to the RPR's catalytic and specificity domains. These results support the presence of two kink-turns, the structural motifs recognized by L7Ae, in distinct functional domains of the RPR and suggest testable mechanisms by which L7Ae contributes to RNase P catalysis.

  16. IrAE – an asparaginyl endopeptidase (legumain) in the gut of the hard tick Ixodes ricinus

    PubMed Central

    Sojka, Daniel; Hajdušek, Ondřej; Dvořák, Jan; Sajid, Mohammed; Franta, Zdeněk; Schneider, Eric L.; Craik, Charles S.; Vancová, Marie; Burešová, Veronika; Bogyo, Matthew; Sexton, Kelly B.; McKerrow, James H.; Caffrey, Conor R.; Kopáček, Petr

    2008-01-01

    Ticks are ectoparasitic blood-feeders and important vectors for pathogens including arboviruses, rickettsiae, spirochetes and protozoa. As obligate blood-feeders, one possible strategy to retard disease transmission is disruption of the parasite’s ability to digest host proteins. However, the constituent peptidases in the parasite gut and their potential interplay in the digestion of the blood meal are poorly understood. We have characterized a novel asparaginyl endopeptidase (legumain) from the hard tick Ixodes ricinus (termed IrAE), which is the first such characterization of a clan CD family C13 cysteine peptidase (protease) in arthropods. By RT-PCR of different tissues, IrAE mRNA was only expressed in the tick gut. Indirect immunofluorescence and electron microscopy localized IrAE in the digestive vesicles of gut cells and within the peritrophic matrix. IrAE was functionally expressed in Pichia pastoris and reacted with a specific peptidyl fluorogenic substrate, and acyloxymethyl ketone and aza-asparagine Michael acceptor inhibitors. IrAE activity was unstable at pH ≥ 6.0 and was shown to have a strict specificity for asparagine at P1 using a positional scanning synthetic combinatorial library. The enzyme hydrolyzed protein substrates with a pH optimum of 4.5, consistent with the pH of gut cell digestive vesicles. Thus, IrAE cleaved the major protein of the blood meal, hemoglobin, to a predominant peptide of 4 kDa. Also, IrAE trans-processed and activated the zymogen form of Schistosoma mansoni cathepsin B1 – an enzyme contributing to hemoglobin digestion in the gut of that bloodfluke. The possible functions of IrAE in the gut digestive processes of I. ricinus are compared with those suggested for other hematophagous parasites. PMID:17336985

  17. Houttuynoids A-E, anti-herpes simplex virus active flavonoids with novel skeletons from Houttuynia cordata.

    PubMed

    Chen, Shao-Dan; Gao, Hao; Zhu, Qin-Chang; Wang, Ya-Qi; Li, Ting; Mu, Zhen-Qiang; Wu, Hong-Ling; Peng, Tao; Yao, Xin-Sheng

    2012-04-01

    Houttuynoids A-E (1-5), a new type of flavonoid with houttuynin tethered to hyperoside, and their presumed biosynthetic precursor hyperoside (6) were isolated from the whole plant of Houttuynia cordata. Their structures were elucidated by analysis of 1D and 2D NMR. A hypothetical biogenetic pathway for houttuynoids A-E was proposed. Compounds 1-5 exhibited potent anti-HSV (herpes simplex viruses) activity. PMID:22414220

  18. Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers.

    PubMed

    Molnár, István; Šimková, Hana; Leverington-Waite, Michelle; Goram, Richard; Cseh, András; Vrána, Jan; Farkas, András; Doležel, Jaroslav; Molnár-Láng, Márta; Griffiths, Simon

    2013-01-01

    Diploid Aegilops umbellulata and Ae. comosa and their natural allotetraploid hybrids Ae. biuncialis and Ae. geniculata are important wild gene sources for wheat. With the aim of assisting in alien gene transfer, this study provides gene-based conserved orthologous set (COS) markers for the U and M genome chromosomes. Out of the 140 markers tested on a series of wheat-Aegilops chromosome introgression lines and flow-sorted subgenomic chromosome fractions, 100 were assigned to Aegilops chromosomes and six and seven duplications were identified in the U and M genomes, respectively. The marker-specific EST sequences were BLAST-ed to Brachypodium and rice genomic sequences to investigate macrosyntenic relationships between the U and M genomes of Aegilops, wheat and the model species. Five syntenic regions of Brachypodium identified genome rearrangements differentiating the U genome from the M genome and from the D genome of wheat. All of them seem to have evolved at the diploid level and to have been modified differentially in the polyploid species Ae. biuncialis and Ae. geniculata. A certain level of wheat-Aegilops homology was detected for group 1, 2, 3 and 5 chromosomes, while a clearly rearranged structure was showed for the group 4, 6 and 7 Aegilops chromosomes relative to wheat. The conserved orthologous set markers assigned to Aegilops chromosomes promise to accelerate gene introgression by facilitating the identification of alien chromatin. The syntenic relationships between the Aegilops species, wheat and model species will facilitate the targeted development of new markers specific for U and M genomic regions and will contribute to the understanding of molecular processes related to allopolyploidization.

  19. Syntenic Relationships between the U and M Genomes of Aegilops, Wheat and the Model Species Brachypodium and Rice as Revealed by COS Markers

    PubMed Central

    Molnár, István; Šimková, Hana; Leverington-Waite, Michelle; Goram, Richard; Cseh, András; Vrána, Jan; Farkas, András; Doležel, Jaroslav; Molnár-Láng, Márta; Griffiths, Simon

    2013-01-01

    Diploid Aegilops umbellulata and Ae. comosa and their natural allotetraploid hybrids Ae. biuncialis and Ae. geniculata are important wild gene sources for wheat. With the aim of assisting in alien gene transfer, this study provides gene-based conserved orthologous set (COS) markers for the U and M genome chromosomes. Out of the 140 markers tested on a series of wheat-Aegilops chromosome introgression lines and flow-sorted subgenomic chromosome fractions, 100 were assigned to Aegilops chromosomes and six and seven duplications were identified in the U and M genomes, respectively. The marker-specific EST sequences were BLAST-ed to Brachypodium and rice genomic sequences to investigate macrosyntenic relationships between the U and M genomes of Aegilops, wheat and the model species. Five syntenic regions of Brachypodium identified genome rearrangements differentiating the U genome from the M genome and from the D genome of wheat. All of them seem to have evolved at the diploid level and to have been modified differentially in the polyploid species Ae. biuncialis and Ae. geniculata. A certain level of wheat–Aegilops homology was detected for group 1, 2, 3 and 5 chromosomes, while a clearly rearranged structure was showed for the group 4, 6 and 7 Aegilops chromosomes relative to wheat. The conserved orthologous set markers assigned to Aegilops chromosomes promise to accelerate gene introgression by facilitating the identification of alien chromatin. The syntenic relationships between the Aegilops species, wheat and model species will facilitate the targeted development of new markers specific for U and M genomic regions and will contribute to the understanding of molecular processes related to allopolyploidization. PMID:23940651

  20. Roche tomography of cataclysmic variables - VI. Differential rotation of AE Aqr - not tidally locked!

    NASA Astrophysics Data System (ADS)

    Hill, C. A.; Watson, C. A.; Shahbaz, T.; Steeghs, D.; Dhillon, V. S.

    2014-10-01

    We present Roche tomograms of the K4V secondary star in the cataclysmic variable AE Aqr, reconstructed from two data sets taken 9 d apart, and measure the differential rotation of the stellar surface. The tomograms show many large, cool starspots, including a large high-latitude spot and a prominent appendage down the trailing hemisphere. We find two distinct bands of spots around 22° and 43° latitude, and estimate a spot coverage of 15.4-17 per cent on the Northern hemisphere. Assuming a solar-like differential rotation law, the differential rotation of AE Aqr was measured using two different techniques. The first method yields an equator-pole lap time of 269 d and the second yields a lap time of 262 d. This shows that the star is not fully tidally locked, as was previously assumed for CVs, but has a co-rotation latitude of ˜40°. We discuss the implications that these observations have on stellar dynamo theory, as well as the impact that spot traversal across the L1 point may have on accretion rates in CVs as well as some of their other observed properties. The entropy landscape technique was applied to determine the system parameters of AE Aqr. For the two independent data sets, we find M1 = 1.20 and 1.17 M⊙, M2 = 0.81 and 0.78 M⊙, and orbital inclinations of 50° to 51° at optimal systemic velocities of γ = -64.7 and -62.9 km s-1.

  1. Antarctic Genomics

    PubMed Central

    Clarke, Andrew; Cockell, Charles S.; Convey, Peter; Detrich III, H. William; Fraser, Keiron P. P.; Johnston, Ian A.; Methe, Barbara A.; Murray, Alison E.; Peck, Lloyd S.; Römisch, Karin; Rogers, Alex D.

    2004-01-01

    With the development of genomic science and its battery of technologies, polar biology stands on the threshold of a revolution, one that will enable the investigation of important questions of unprecedented scope and with extraordinary depth and precision. The exotic organisms of polar ecosystems are ideal candidates for genomic analysis. Through such analyses, it will be possible to learn not only the novel features that enable polar organisms to survive, and indeed thrive, in their extreme environments, but also fundamental biological principles that are common to most, if not all, organisms. This article aims to review recent developments in Antarctic genomics and to demonstrate the global context of such studies. PMID:18629155

  2. Regions of the bread wheat D genome associated with variation in key photosynthesis traits and shoot biomass under both well watered and water deficient conditions.

    PubMed

    Osipova, Svetlana; Permyakov, Alexey; Permyakova, Marina; Pshenichnikova, Tatyana; Verkhoturov, Vasiliy; Rudikovsky, Alexandr; Rudikovskaya, Elena; Shishparenok, Alexandr; Doroshkov, Alexey; Börner, Andreas

    2016-05-01

    A quantitative trait locus (QTL) approach was taken to reveal the genetic basis in wheat of traits associated with photosynthesis during a period of exposure to water deficit stress. The performance, with respect to shoot biomass, gas exchange and chlorophyll fluorescence, leaf pigment content and the activity of various ascorbate-glutathione cycle enzymes and catalase, of a set of 80 wheat lines, each containing a single chromosomal segment introgressed from the bread wheat D genome progenitor Aegilops tauschii, was monitored in plants exposed to various water regimes. Four of the seven D genome chromosomes (1D, 2D, 5D, and 7D) carried clusters of both major (LOD >3.0) and minor (LOD between 2.0 and 3.0) QTL. A major QTL underlying the activity of glutathione reductase was located on chromosome 2D, and another, controlling the activity of ascorbate peroxidase, on chromosome 7D. A region of chromosome 2D defined by the microsatellite locus Xgwm539 and a second on chromosome 7D flanked by the marker loci Xgwm1242 and Xgwm44 harbored a number of QTL associated with the water deficit stress response.

  3. Ae4 (Slc4a9) Anion Exchanger Drives Cl- Uptake-dependent Fluid Secretion by Mouse Submandibular Gland Acinar Cells.

    PubMed

    Peña-Münzenmayer, Gaspar; Catalán, Marcelo A; Kondo, Yusuke; Jaramillo, Yasna; Liu, Frances; Shull, Gary E; Melvin, James E

    2015-04-24

    Transcellular Cl(-) movement across acinar cells is the rate-limiting step for salivary gland fluid secretion. Basolateral Nkcc1 Na(+)-K(+)-2Cl(-) cotransporters play a critical role in fluid secretion by promoting the intracellular accumulation of Cl(-) above its equilibrium potential. However, salivation is only partially abolished in the absence of Nkcc1 cotransporter activity, suggesting that another Cl(-) uptake pathway concentrates Cl(-) ions in acinar cells. To identify alternative molecular mechanisms, we studied mice lacking Ae2 and Ae4 Cl(-)/HCO3 (-) exchangers. We found that salivation stimulated by muscarinic and β-adrenergic receptor agonists was normal in the submandibular glands of Ae2(-/-) mice. In contrast, saliva secretion was reduced by 35% in Ae4(-/-) mice. The decrease in salivation was not related to loss of Na(+)-K(+)-2Cl(-) cotransporter or Na(+)/H(+) exchanger activity in Ae4(-/-) mice but correlated with reduced Cl(-) uptake during β-adrenergic receptor activation of cAMP signaling. Direct measurements of Cl(-)/HCO3 (-) exchanger activity revealed that HCO3 (-)-dependent Cl(-) uptake was reduced in the acinar cells of Ae2(-/-) and Ae4(-/-) mice. Moreover, Cl(-)/HCO3 (-) exchanger activity was nearly abolished in double Ae4/Ae2 knock-out mice, suggesting that most of the Cl(-)/HCO3 (-) exchanger activity in submandibular acinar cells depends on Ae2 and Ae4 expression. In conclusion, both Ae2 and Ae4 anion exchangers are functionally expressed in submandibular acinar cells; however, only Ae4 expression appears to be important for cAMP-dependent regulation of fluid secretion.

  4. Three-dimensional model for the human Cl-/HCO3- exchanger, AE1, by homology to the E. coli ClC protein.

    PubMed

    Bonar, Pamela; Schneider, Hans-Peter; Becker, Holger M; Deitmer, Joachim W; Casey, Joseph R

    2013-07-24

    AE1 mediates electroneutral 1:1 exchange of bicarbonate for chloride across the plasma membrane of erythrocytes and type A cells of the renal collecting duct. No high-resolution structure is available for the AE1 membrane domain, which alone is required for its transport activity. A recent electron microscopy structure of the AE1 membrane domain was proposed to have a similar protein fold to ClC chloride channels. We developed a three-dimensional homology model of the AE1 membrane domain, using the Escherichia coli ClC channel structure as a template. This model agrees well with a long list of biochemically established spatial constraints for AE1. To investigate the AE1 transport mechanism, we created point mutations in regions corresponding to E. coli ClC transport mechanism residues. When expressed in HEK293 cells, several mutants had Cl(-)/HCO3(-) exchange rates significantly different from that of wild-type AE1. When further assessed in Xenopus laevis oocytes, there were significant changes in the transport activity of several AE1 point mutants as assessed by changes in pH. None of the mutants, however, added an electrogenic component to AE1 transport activity. This indicates that the AE1 point mutants altered the transport activity of AE1, without changing its electrogenicity and stoichiometry. The homology model successfully identified residues in AE1 that are critical to AE1 transport activity. Thus, we conclude that AE1 has a similar protein fold to ClC chloride channels.

  5. Conceptual design of the AE481 Demon Remotely Piloted Vehicle (RPV)

    NASA Technical Reports Server (NTRS)

    Hailes, Chris; Kolver, Jill; Nestor, Julie; Patterson, Mike; Selow, Jan; Sagdeo, Pradip; Katz, Kenneth

    1994-01-01

    This project report presents a conceptual design for a high speed remotely piloted vehicle (RPV). The AE481 Demon RPV is capable of performing video reconnaissance missions and electronic jamming over hostile territory. The RPV cruises at a speed of Mach 0.8 and an altitude of 300 feet above the ground throughout its mission. It incorporates a rocket assisted takeoff and a parachute-airbag landing. Missions are preprogrammed, but in-flight changes are possible. The Demon is the answer to a military need for a high speed, low altitude RPV. The design methods, onboard systems, and avionics payload are discussed in this conceptual design report along with economic viability.

  6. HARPS spectropolarimetry of three sharp-lined Herbig Ae stars: New insights ⋆

    NASA Astrophysics Data System (ADS)

    Järvinen, S. P.; Carroll, T. A.; Hubrig, S.; Schöller, M.; Ilyin, I.; Korhonen, H.; Pogodin, M.; Drake, N. A.

    2015-12-01

    Aims: Recently, several arguments have been presented that favour a scenario in which the low detection rate of magnetic fields in Herbig Ae stars can be explained by the weakness of these fields and rather large measurement uncertainties. Spectropolarimetric studies involving sharp-lined Herbig Ae stars appear to be a promising approach for the detection of such weak magnetic fields. These studies offer a clear spectrum interpretation with respect to the effects of blending, local velocity fields, and chemical abundances, and allow us to identify a proper sample of spectral lines appropriate for magnetic field determination. Methods: High-resolution spectropolarimetric observations of the three sharp-lined (vsini< 15 km s-1) Herbig Ae stars HD 101412, HD 104237, and HD 190073 have been obtained in recent years with the HARPS spectrograph in polarimetric mode. We used these archival observations to investigate the behaviour of their longitudinal magnetic fields. To carry out the magnetic field measurements, we used the multi-line singular value decomposition (SVD) method for Stokes profile reconstruction. Results: We carried out a high-resolution spectropolarimetric analysis of the Herbig Ae star HD 101412 for the first time. We discovered that different line lists yield differences in both the shape of the Stokes V signatures and their field strengths. They could be interpreted in the context of the impact of the circumstellar matter and elemental abundance inhomogeneities on the measurements of the magnetic field. On the other hand, due to the small size of the Zeeman features on the first three epochs and the lack of near-IR observations, circumstellar and photospheric contributions cannot be estimated unambiguously. In the SVD Stokes V spectrum of the SB2 system HD 104237, we detect that the secondary component, which is a T Tauri star, possesses a rather strong magnetic field ⟨Bz⟩ = 129 ± 12 G, while no significant field is present in the primary

  7. Low-dimensional chaos in magnetospheric activity from AE time series

    NASA Technical Reports Server (NTRS)

    Vassiliadis, D. V.; Sharma, A. S.; Eastman, T. E.; Papadopoulos, K.

    1990-01-01

    The magnetospheric response to the solar-wind input, as represented by the time-series measurements of the auroral electrojet (AE) index, has been examined using phase-space reconstruction techniques. The system was found to behave as a low-dimensional chaotic system with a fractal dimension of 3.6 and has Kolmogorov entropy less than 0.2/min. These indicate that the dynamics of the system can be adequately described by four independent variables, and that the corresponding intrinsic time scale is of the order of 5 min. The relevance of the results to magnetospheric modeling is discussed.

  8. Determination of soil micronutrients (Fe, Cu, Mn, B) extracted by Mehlich 3 using MP-AES

    NASA Astrophysics Data System (ADS)

    Krebstein, Kadri; Tõnutare, Tõnu; Rodima, Ako; Kõlli, Raimo; Künnapas, Allan; Rebane, Jaanus; Penu, Priit; Vennik, Kersti; Soobik, Liina

    2015-04-01

    The total concentration of micronutrients in soils is not a good predictor of its bioavailability and solubility. Therefore, during the decades several methods for the determination of plant availability and extractable fraction of micro- and macronutrients in soil were developed. Among several methods Mehlich 3 is the most appropriate due to its suitability for extracting soil micro- and macronutrients simultaneously. The AAS (atomic absorption spectroscopic) and ICP (inductively coupled plasma) methods are widely used for the analysis of microelements today. In 2011 the third method was added to this list with the appearance of the microwave plasma atomic emission spectrometer (MP-AES). This multielemental analytical equipment has a high potential in the soil analysis. Up to now there have been made some experiments for the use of MP-AES in soil and geological material analysis. But there is no information about the analysis of soil micronutrients extracted according to Mehlich 3 method and determined with the MP-AES. Due to the differences in atomization conditions the different emission and absorption lines are used in different instrumental methods. Therefore it is very important to choose the most suitable emission lines and the best atomization conditions. From the analytical viewpoint it is important to get coincidental results with other instrumental methods and from the agronomical point of view it is important to know the difference between AAS and ICP methods. For the experiment 51 soil samples were used. The samples were collected from A horizons of agricultural lands. The pH range was from 4.7 to 7.5 and organic matter content from 1.4 to 7.8%. The content of Mehlich 3 extractable micronutrients was determined using ICP and MP instrumental methods. The micronutrient contents ranged as follows: Fe - from 170 to 470 mg kg-1, Mn - from 5 to 190 mg kg-1, Cu - from 0.3 to 4.5 mg kg-1, B - from 0.2 to 2.1 mg kg-1. The optimal instrumental settings for iron

  9. Microstructural Evolution of a C-Mn Steel During Hot Compression Above the Ae3

    NASA Astrophysics Data System (ADS)

    Aranas, Clodualdo M.; Shen, Yu-Jack; Rodrigues, Samuel F.; Jonas, John J.

    2016-09-01

    In order to study the microstructural evolution during deformation, hot compression tests were carried out on a 0.06 wt pct C-0.30 wt pct Mn-0.01 wt pct Si steel at temperatures above the Ae3. The volume fraction of ferrite produced dynamically increased with the applied strain and decreased with increasing temperature. The present data are used to generate an isothermal strain-temperature-transformation diagram based on the applied strain. Results of this type can be employed to predict the effect of dynamic transformation during thermomechanical processing.

  10. Estimation of The Radiation Environment Based On The NASA Ap-8 and Ae-8 Models

    NASA Technical Reports Server (NTRS)

    Morton, Thomas; Lyons, Valerie (Technical Monitor)

    2002-01-01

    In this paper, we discuss the earth's trapped radiation environment, as described by the NASA models AP-8 and AE-8. We include a description of the sources and structure of the trapped radiation belts, and their dependence on external factors. After describing how to use the models to predict the environment, we present data from various space missions, and compare those data to the models. This shows the limits and strengths of the models. Finally, we describe alternative models of the trapped radiation belts, and discuss why they have not been widely adopted yet.

  11. Prediction of AU, AL, and AE indices using solar wind parameters

    NASA Astrophysics Data System (ADS)

    Luo, B.; Li, X.; Temerin, M. A.; Liu, S.

    2013-12-01

    An empirical model that predicts the AU index, a measure of the Earth's east electrojet, derived from magnetometers in the Northern hemisphere, is introduced. In addition, we have improved the previous AL model (Li et al., 2007) and have combined it with the AU model to produce an AE model. All models are based on upstream solar wind and interplanetary magnetic field parameters that have been propagated to the magnetopause by a simple ballistic propagation scheme for the years 1995 to 2001. The AU model predicts the 10-min averaged AU index for the seven years 1995-2001 with a prediction efficiency (PE) of 0.716, a linear correlation coefficient (LC) between the AU index and the model of 0.846, and a root mean square (RMS) error of 39.3 nT. We have updated the AL model introduced in Li et al. [2007] using the same prediction functions used to predict AU but with different parameters. The new AL model predicts the seven year AL index with a PE of 0.715, an LC of 0.846, and an RMS error of 81.6 nT. Using AE = AU-AL, the AE index is predicted with a PE of 0.788, an LC of 0.888, and an RMS error of 95.7 nT. The better PE and LC of the AE model over AU and AL models is because AU and AL are better correlated then their prediction errors. It is also found that: (1) The F10.7 index modulates the growth of auroral electrojet indices; (2) AU and AL behave differently during geomagnetic storm main phases. AU can drop to a low level while the magnitude of AL does not drop as much; (3) the longer-averaged auroral electrojets indices can be predicted very well but shorter timescale variations are much less predictable; (4) auroral electrojet activity is strongly dependent on the upstream solar wind velocity and the interplanetary magnetic field but is only weakly dependent on the solar wind density.

  12. [Artificial neural network applied for spectral overlap interference correction in ICP-AES].

    PubMed

    Zhang, Z; Liu, S; Zeng, X

    1997-10-01

    A back-propagation artificial neural network (BP-ANN) has been applied to correcting spectral overlap interference in inductively coupled plasma atomic emission spectrometry (ICP-AES). Some network parameters including the range of input values and training sequence for training patterns presented to the network were discussed using simulated Ce 413.380nm and Pr 413.380nm line profiles. Results show that the noise in simulated mixture spectra will slow down the network convergence and has more influence on network prediction. PMID:15810366

  13. The Environment of the Optically Brightest Herbig Ae Star, HD 104237

    NASA Astrophysics Data System (ADS)

    Grady, C. A.; Woodgate, B.; Torres, Carlos A. O.; Henning, Th.; Apai, D.; Rodmann, J.; Wang, Hongchi; Stecklum, B.; Linz, H.; Williger, G. M.; Brown, A.; Wilkinson, E.; Harper, G. M.; Herczeg, G. J.; Danks, A.; Vieira, G. L.; Malumuth, E.; Collins, N. R.; Hill, R. S.

    2004-06-01

    We investigate the environment of the nearest Herbig Ae star, HD 104237, with a multiwavelength combination of optical coronagraphic, near-IR, and mid-IR imaging supported by optical, UV, and far-ultraviolet spectroscopy. We confirm the presence of T Tauri stars associated with the Herbig Ae star HD 104237, noted by Feigelson et al. We find that two of the stars within 15" of HD 104237 have IR excesses, potentially indicating the presence of circumstellar disks, in addition to the Herbig Ae star itself. We derive a new spectral type of A7.5Ve-A8Ve for HD 104237 and find log(L/Lsolar)=1.39. With these data, HD 104237 has an age of t~5 Myr, in agreement with the estimates for the other members of the association. HD 104237 is still actively accreting, with a conspicuous UV/far-UV excess seen down to 1040 Å, and is driving a bipolar microjet termed HH 669. This makes it the second, older Herbig Ae star now known to have a microjet. The presence of the microjet enables us to constrain the circumstellar disk to r<=0.6" (70 AU) with an inclination angle of i=18deg+14-11 from pole-on. The absence of a spatially extended continuum and fluorescent H2 emission near Lyα is in agreement with the prediction of shadowed disk models for the IR spectral energy distribution. With the high spatial density of disks in this group of stars, proximity, and minimal reddening, HD 104237 and its companions should serve as ideal laboratories for probing the comparative evolution of planetary systems. Based on observations made with the NASA/ESA Hubble Space Telescope, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA Contract NAS5-26555. Based on observations made with ESO's TIMMI2 camera on La Silla, Chile, under program ID 71.C-0438. Based on observations made with the ESO VLT and the Near-IR Adaptive Optics System+Conica, under program ID 71.C-0143. Based on observations made under the ON-ESO agreement for the joint operation of the 1.52 m

  14. Reniochalistatins A-E, cyclic peptides from the marine sponge Reniochalina stalagmitis.

    PubMed

    Zhan, Kai-Xuan; Jiao, Wei-Hua; Yang, Fan; Li, Jing; Wang, Shu-Ping; Li, Yu-Shan; Han, Bing-Nan; Lin, Hou-Wen

    2014-12-26

    Five new cyclic peptides (including four heptapeptides and one octapeptide), reniochalistatins A-E (1-5), were isolated and characterized from the marine sponge Reniochalina stalagmitis collected off Yongxing Island in the South China Sea. Their structures were assigned on the basis of HRESIMS, 1D and 2D NMR spectroscopic data, and MALDI-TOF/TOF data for sequence analysis. The absolute configurations of all of the amino acid residues were determined using chiral-phase HPLC and Marfey's analysis. The cyclic octapeptide reniochalistatin E showed biological activity in various cytotoxicity assays employing different tumor cell lines (RPMI-8226, MGC-803, HL-60, HepG2, and HeLa).

  15. Indimicins A-E, Bisindole Alkaloids from the Deep-Sea-Derived Streptomyces sp. SCSIO 03032.

    PubMed

    Zhang, Wenjun; Ma, Liang; Li, Sumei; Liu, Zhong; Chen, Yuchan; Zhang, Haibo; Zhang, Guangtao; Zhang, Qingbo; Tian, Xinpeng; Yuan, Chengshan; Zhang, Si; Zhang, Weimin; Zhang, Changsheng

    2014-08-22

    Five new bisindole alkaloids, indimicins A-E (1-5), bearing a unique 1',3'-dimethyl-2'-hydroindole moiety, were isolated from the marine-derived Streptomyces sp. SCSIO 03032, along with two new compounds, lynamicins F and G (6 and 7). Their planar structures were elucidated by detailed interpretation of their MS and NMR spectroscopic data, and the absolute configurations were determined by X-ray crystallographic analysis (for 1), comparison of CD spectra (for 2-4), and quantum chemical calculations (for 5). Indimicin B (2) exhibited moderate cytotoxic activity toward the MCF-7 cell line.

  16. Primary care units in A&E departments in North Thames in the 1990s: initial experience and future implications.

    PubMed Central

    Freeman, G K; Meakin, R P; Lawrenson, R A; Leydon, G M; Craig, G

    1999-01-01

    BACKGROUND: In 1992, the Tomlinson Report recommended a shift from secondary to primary care, including specific primary care provision in accident and emergency (A&E) departments. Availability of short-term so-called Tomlinson moneys allowed a number of experimental services. A study of the experience of A&E-based staff is reported to assist general practitioners (GPs) and purchasers and identify areas for further research. AIMS: To find the number and scope of primary care facilities in A&E services in North Thames; to find factors encouraging or inhibiting the setting-up of a successful service; to examine the views of a range of A&E staff including GPs, consultants, and nurses; and to suggest directions for more specific research. METHOD: A postal questionnaire was sent to all North Thames A&E departments, and an interview study of staff in one unit was arranged, leading to a questionnaire study of all GPs employed in North Thames primary care services in A&E. This was followed by interviews of staff members in five contrasting primary care units in A&E. RESULTS: By mid-1995, at least 16 of the 33 North Thames A&E departments ran a primary care service. Seven mainly employed GPs, the others employed nurse practitioners (NPs). Problems for GPs included unclear role definition and their non-availability at times of highest patient demand. GPs' reasons for working in A&E sometimes differed from the aims of primary care in an A&E service. Staff interviews revealed differing views about their role and about use of triage protocols. Ethnicity data were being collected, but not yet being used, to improve service to patients. CONCLUSIONS: A number of benefits follow the introduction of primary care practitioners into A&E. Different models have evolved, with a variety of GP and NP staffing arrangements according to local ideas and priorities. There is some confusion over whether these services aim to improve A&E-based care or to divert it to general practice. Cost

  17. Identification of quantitative trait loci for abscisic acid responsiveness in the D-genome of hexaploid wheat.

    PubMed

    Iehisa, Julio C M; Matsuura, Takakazu; Mori, Izumi C; Yokota, Hirokazu; Kobayashi, Fuminori; Takumi, Shigeo

    2014-06-15

    In crop species such as wheat, abiotic stresses and preharvest sprouting reduce grain yield and quality. The plant hormone abscisic acid (ABA) plays important roles in abiotic stress tolerance and seed dormancy. In previous studies, we evaluated ABA responsiveness of 67 Aegilops tauschii accessions and their synthetic hexaploid wheat lines, finding wide variation that was due to the D-genome. In this study, quantitative trait locus (QTL) analysis was performed using an F2 population derived from crosses of highly ABA-responsive and less-responsive synthetic wheat lines. A significant QTL was detected on chromosome 6D, in a similar location to that reported for ABA responsiveness using recombinant inbred lines derived from common wheat cultivars Mironovskaya 808 and Chinese Spring. A comparative map and physiological and expression analyses of the 6D QTL suggested that this locus involved in line differences among wheat synthetics is different from that involved in cultivar differences in common wheat. The common wheat 6D QTL was found to affect seed dormancy and the regulation of cold-responsive/late embryogenesis abundant genes during dehydration. However, in synthetic wheat, we failed to detect any association of ABA responsiveness with abiotic stress tolerance or seed dormancy, at least under our experimental conditions. Development of near-isogenic lines will be important for functional analyses of the synthetic wheat 6D QTL. PMID:24877675

  18. In silico phylogenomics using complete genomes: a case study on the evolution of hominoids.

    PubMed

    Costa, Igor Rodrigues; Prosdocimi, Francisco; Jennings, W Bryan

    2016-09-01

    The increasing availability of complete genome data is facilitating the acquisition of phylogenomic data sets, but the process of obtaining orthologous sequences from other genomes and assembling multiple sequence alignments remains piecemeal and arduous. We designed software that performs these tasks and outputs anonymous loci (AL) or anchored enrichment/ultraconserved element loci (AE/UCE) data sets in ready-to-analyze formats. We demonstrate our program by applying it to the hominoids. Starting with human, chimpanzee, gorilla, and orangutan genomes, our software generated an exhaustive data set of 292 ALs (∼1 kb each) in ∼3 h. Not only did analyses of our AL data set validate the program by yielding a portrait of hominoid evolution in agreement with previous studies, but the accuracy and precision of our estimated ancestral effective population sizes and speciation times represent improvements. We also used our program with a published set of 512 vertebrate-wide AE "probe" sequences to generate data sets consisting of 171 and 242 independent loci (∼1 kb each) in 11 and 13 min, respectively. The former data set consisted of flanking sequences 500 bp from adjacent AEs, while the latter contained sequences bordering AEs. Although our AE data sets produced the expected hominoid species tree, coalescent-based estimates of ancestral population sizes and speciation times based on these data were considerably lower than estimates from our AL data set and previous studies. Accordingly, we suggest that loci subjected to direct or indirect selection may not be appropriate for coalescent-based methods. Complete in silico approaches, combined with the burgeoning genome databases, will accelerate the pace of phylogenomics. PMID:27435933

  19. In silico phylogenomics using complete genomes: a case study on the evolution of hominoids.

    PubMed

    Costa, Igor Rodrigues; Prosdocimi, Francisco; Jennings, W Bryan

    2016-09-01

    The increasing availability of complete genome data is facilitating the acquisition of phylogenomic data sets, but the process of obtaining orthologous sequences from other genomes and assembling multiple sequence alignments remains piecemeal and arduous. We designed software that performs these tasks and outputs anonymous loci (AL) or anchored enrichment/ultraconserved element loci (AE/UCE) data sets in ready-to-analyze formats. We demonstrate our program by applying it to the hominoids. Starting with human, chimpanzee, gorilla, and orangutan genomes, our software generated an exhaustive data set of 292 ALs (∼1 kb each) in ∼3 h. Not only did analyses of our AL data set validate the program by yielding a portrait of hominoid evolution in agreement with previous studies, but the accuracy and precision of our estimated ancestral effective population sizes and speciation times represent improvements. We also used our program with a published set of 512 vertebrate-wide AE "probe" sequences to generate data sets consisting of 171 and 242 independent loci (∼1 kb each) in 11 and 13 min, respectively. The former data set consisted of flanking sequences 500 bp from adjacent AEs, while the latter contained sequences bordering AEs. Although our AE data sets produced the expected hominoid species tree, coalescent-based estimates of ancestral population sizes and speciation times based on these data were considerably lower than estimates from our AL data set and previous studies. Accordingly, we suggest that loci subjected to direct or indirect selection may not be appropriate for coalescent-based methods. Complete in silico approaches, combined with the burgeoning genome databases, will accelerate the pace of phylogenomics.

  20. Genomic Testing

    MedlinePlus

    ... Working Group Independent Web site Informing the effective integration of genomics into health practice—Lynch syndrome ACCE Model for Evaluating Genetic Tests Recommendations by the EGAPP Working Group Top of ... ...

  1. Targeted disruption of the Cl−/HCO3− exchanger Ae2 results in osteopetrosis in mice

    PubMed Central

    Josephsen, Kaj; Praetorius, Jeppe; Frische, Sebastian; Gawenis, Lara R.; Kwon, Tae-Hwan; Agre, Peter; Nielsen, Søren; Fejerskov, Ole

    2009-01-01

    Osteoclasts are multinucleated bone-resorbing cells responsible for constant remodeling of bone tissue and for maintaining calcium homeostasis. The osteoclast creates an enclosed space, a lacuna, between their ruffled border membrane and the mineralized bone. They extrude H+ and Cl− into these lacunae by the combined action of vesicular H+-ATPases and ClC-7 exchangers to dissolve the hydroxyapatite of bone matrix. Along with intracellular production of H+ and HCO3− by carbonic anhydrase II, the H+-ATPases and ClC-7 exchangers seems prerequisite for bone resorption, because genetic disruption of either of these proteins leads to osteopetrosis. We aimed to complete the molecular model for lacunar acidification, hypothesizing that a HCO3− extruding and Cl− loading anion exchange protein (Ae) would be necessary to sustain bone resorption. The Ae proteins can provide both intracellular pH neutrality and serve as cellular entry mechanism for Cl− during bone resorption. Immunohistochemistry revealed that Ae2 is exclusively expressed at the contra-lacunar plasma membrane domain of mouse osteoclast. Severe osteopetrosis was encountered in Ae2 knockout (Ae2−/−) mice where the skeletal development was impaired with a higher diffuse radio-density on x-ray examination and the bone marrow cavity was occupied by irregular bone speculae. Furthermore, osteoclasts in Ae2−/− mice were dramatically enlarged and fail to form the normal ruffled border facing the lacunae. Thus, Ae2 is likely to be an essential component of the bone resorption mechanism in osteoclasts. PMID:19164575

  2. Effect of Deep Cryogenic Treatment on Microstructure and Properties of AE42 Mg Alloy

    NASA Astrophysics Data System (ADS)

    Bhale, Pranav; Shastri, H.; Mondal, A. K.; Masanta, M.; Kumar, S.

    2016-07-01

    The effect of deep cryogenic treatment (DCT) on microstructure and mechanical properties including corrosion behavior of the squeeze-cast AE42 alloy has been investigated. For comparison, the same has also been studied on the untreated alloy. Both the untreated and deep cryogenic-treated (DCTed) alloys comprised α-Mg and Al4RE phases. Volume fraction of the Al4RE phase in the AE42 alloy reduced gradually following DCT carried out from 4 to 16 h. Ductility and UTS increase significantly with a marginal increase in YS of all the DCTed alloys. The improvement was attributed to the dissolution of the brittle Al4RE phase following DCT. Among the alloys employed, the best tensile properties were obtained for the 16-h DCT alloy due to its lowest content of the brittle Al4RE phase. Creep resistance of the DCTed alloys was lower than that of the untreated alloy owing to the presence of less amount of thermally stable intermetallic Al4RE phase. Wear resistance of the alloy reduces following DCT due to reduced hardness of the DCTed alloys. The untreated alloy exhibits the best corrosion resistance, whereas poor corrosion resistance of the DCTed alloys is attributed to the reduced amount of Al4RE phase that fails to built a corrosion resistance barrier.

  3. Hello darkness my old friend: the fading of the nearby TDE ASASSN-14ae

    NASA Astrophysics Data System (ADS)

    Brown, Jonathan S.; Shappee, Benjamin J.; Holoien, T. W.-S.; Stanek, K. Z.; Kochanek, C. S.; Prieto, J. L.

    2016-11-01

    We present late-time optical spectroscopy taken with the Large Binocular Telescope's Multi-Object Double Spectrograph, an improved All-Sky Automated Survey for SuperNovae pre-discovery non-detection, and late-time Swift observations of the nearby (d = 193 Mpc, z = 0.0436) tidal disruption event (TDE) ASASSN-14ae. Our observations span from ˜20 d before to ˜750 d after discovery. The proximity of ASASSN-14ae allows us to study the optical evolution of the flare and the transition to a host-dominated state with exceptionally high precision. We measure very weak Hα emission 300 d after discovery (LH α ≃ 4 × 1039 erg s-1) and the most stringent upper limit to date on the Hα luminosity ˜750 d after discovery (LH α ≲ 1039 erg s-1), suggesting that the optical emission arising from a TDE can vanish on a time-scale as short as 1 yr. Our results have important implications for both spectroscopic detection of TDE candidates at late times, as well as the nature of TDE host galaxies themselves.

  4. Global equatorial ionospheric vertical plasma drifts measured by the AE-E satellite

    SciTech Connect

    Fejer, B.G.; Paula, E.R. de l Heelis, R.A.

    1995-04-01

    Ion drift meter observations from the Atmospheric Explorer E satellite during the period of January 1977 to December 1979 are used to study the dependence of equatorial (dip latitudes {le}7.5{degrees}) F region vertical plasma drifts (east-west electric fields) on solar activity, season, and longitude. The satellite-observed ion drifts show large day-to-day and seasonal variations. Solar cycle effects are most pronounced near the dusk sector with a large increase of the prereversal velocity enhancement from solar minimum to maximum. The diurnal, seasonal, and solar cycle dependence of the longitudinally averaged drifts are consistent with results from the Jicamarca radar except near the June solstice when the AE-E nightime downward velocities are significantly smaller than those observed by the radar. Pronounced presunrise downward drift enhancements are often observed over a large longitudinal range but not in the Peruvian equatorial region. The satellite data indicate that longitudinal variations are largest near the June solstice, particularly near dawn and dusk but are virtually absent during equinox. The longitudinal dependence of the AE-E vertical drifts is consistent with results from ionosonde data. These measurements were also used to develop a description of equatorial F region vertical drifts in four longitudinal sectors. 17 refs., 7 figs.

  5. Hello Darkness My Old Friend: The Fading of the Nearby TDE ASASSN-14ae

    NASA Astrophysics Data System (ADS)

    Brown, Jonathan S.; Shappee, Benjamin J.; Holoien, T. W.-S.; Stanek, K. Z.; Kochanek, C. S.; Prieto, J. L.

    2016-08-01

    We present late-time optical spectroscopy taken with the Large Binocular Telescope's Multi-Object Double Spectrograph, an improved ASAS-SN pre-discovery non-detection, and late-time Swift observations of the nearby (d = 193 Mpc, z = 0.0436) tidal disruption event (TDE) ASASSN-14ae. Our observations span from ˜ 20 days before to ˜ 750 days after discovery. The proximity of ASASSN-14ae allows us to study the optical evolution of the flare and the transition to a host dominated state with exceptionally high precision. We measure very weak Hα emission 300 days after discovery (LHα ≃ 4 × 1039 ergs s-1) and the most stringent upper limit to date on the Hα luminosity ˜ 750 days after discovery (LHα ≲ 1039 ergs s-1), suggesting that the optical emission arising from a TDE can vanish on a timescale as short as 1 year. Our results have important implications for both spectroscopic detection of TDE candidates at late times, as well as the nature of TDE host galaxies themselves.

  6. The far-infrared behaviour of Herbig Ae/Be discs: Herschel PACS photometry

    NASA Astrophysics Data System (ADS)

    Pascual, N.; Montesinos, B.; Meeus, G.; Marshall, J. P.; Mendigutía, I.; Sandell, G.

    2016-02-01

    Herbig Ae/Be objects are pre-main sequence stars surrounded by gas- and dust-rich circumstellar discs. These objects are in the throes of star and planet formation, and their characterisation informs us of the processes and outcomes of planet formation processes around intermediate mass stars. Here we analyse the spectral energy distributions of disc host stars observed by the Herschel open time key programme "Gas in Protoplanetary Systems". We present Herschel/PACS far-infrared imaging observations of 22 Herbig Ae/Bes and 5 debris discs, combined with ancillary photometry spanning ultraviolet to sub-millimetre wavelengths. From these measurements we determine the diagnostics of disc evolution, along with the total excess, in three regimes spanning near-, mid-, and far-infrared wavelengths. Using appropriate statistical tests, these diagnostics are examined for correlations. We find that the far-infrared flux, where the disc becomes optically thin, is correlated with the millimetre flux, which provides a measure of the total dust mass. The ratio of far-infrared to sub-millimetre flux is found to be greater for targets with discs that are brighter at millimetre wavelengths and that have steeper sub-millimetre slopes. Furthermore, discs with flared geometry have, on average, larger excesses than flat geometry discs. Finally, we estimate the extents of these discs (or provide upper limits) from the observations. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

  7. Deciphering the X-ray Emission of the Nearest Herbig Ae Star

    NASA Technical Reports Server (NTRS)

    Skinner, Stephen L.

    2004-01-01

    In this research program, we obtained and analyzed an X-ray observation of the young nearby intermediate mass pre-main sequence star HD 104237 using the XMM-Newton space-based observatory. The observation was obtained on 17 Feb. 2002. This observation yielded high-quality X-ray images, spectra, and timing data which provided valuable information on the physical processes responsible for the X-ray emission. This star is a member of the group of so-called Herbig Ae/Be stars, which are young intermediate mass (approx. 2 - 4 solar masses) pre-main sequence (PMS) stars a few million years old that have not yet begun core hydrogen burning. The objective of the XMM-Newton observation was to obtain higher quality data than previously available in order to constrain possible X-ray emission mechanisms. The origin of the X-ray emission from Herbig Ae/Be stars is not yet known. These intermediate mass PMS stars lie on radiative tracks and are not expected to emit X-rays via solar-like magnetic processes, nor are their winds powerful enough to produce X-rays by radiative wind shocks as in more massive O-type stars. The emission could originate in unseen low-mass companions, or it may be intrinsic to the Herbig stars themselves if they still have primordial magnetic fields or can sustain magnetic activity via a nonsolar dynamo.

  8. Einstein X-ray observations of Herbig Ae/Be stars

    NASA Technical Reports Server (NTRS)

    Damiani, F.; Micela, G.; Sciortino, S.; Harnden, F. R., Jr.

    1994-01-01

    We have investigated the X-ray emission from Herbig Ae/Be stars, using the full set of Einstein Imaging Proportional Counter (IPC) observations. Of a total of 31 observed Herbig stars, 11 are confidently identified with X-ray sources, with four additonal dubious identifications. We have used maximum likelihood luminosity functions to study the distribution of X-ray luminosity, and we find that Be stars are significantly brighter in X-rays than Ae stars and that their X-ray luminosity is independent of projected rotational velocity v sin i. The X-ray emission is instead correlated with stellar bolometric luminosity and with effective temperature, and also with the kinetic luminosity of the stellar wind. These results seem to exclude a solar-like origin for the X-ray emission, a possibility suggested by the most recent models of Herbig stars' structure, and suggest an analogy with the X-ray emission of O (and early B) stars. We also observe correlations between X-ray luminosity and the emission at 2.2 microns (K band) and 25 microns, which strengthen the case for X-ray emission of Herbig stars originating in their circumstellar envelopes.

  9. Effect of Deep Cryogenic Treatment on Microstructure and Properties of AE42 Mg Alloy

    NASA Astrophysics Data System (ADS)

    Bhale, Pranav; Shastri, H.; Mondal, A. K.; Masanta, M.; Kumar, S.

    2016-09-01

    The effect of deep cryogenic treatment (DCT) on microstructure and mechanical properties including corrosion behavior of the squeeze-cast AE42 alloy has been investigated. For comparison, the same has also been studied on the untreated alloy. Both the untreated and deep cryogenic-treated (DCTed) alloys comprised α-Mg and Al4RE phases. Volume fraction of the Al4RE phase in the AE42 alloy reduced gradually following DCT carried out from 4 to 16 h. Ductility and UTS increase significantly with a marginal increase in YS of all the DCTed alloys. The improvement was attributed to the dissolution of the brittle Al4RE phase following DCT. Among the alloys employed, the best tensile properties were obtained for the 16-h DCT alloy due to its lowest content of the brittle Al4RE phase. Creep resistance of the DCTed alloys was lower than that of the untreated alloy owing to the presence of less amount of thermally stable intermetallic Al4RE phase. Wear resistance of the alloy reduces following DCT due to reduced hardness of the DCTed alloys. The untreated alloy exhibits the best corrosion resistance, whereas poor corrosion resistance of the DCTed alloys is attributed to the reduced amount of Al4RE phase that fails to built a corrosion resistance barrier.

  10. Surface imaging of late-type contact binaries I: AE Phoenicis and YY Eridani

    NASA Astrophysics Data System (ADS)

    Maceroni, C.; Vilhu, O.; van't Veer, F.; van Hamme, W.

    1994-08-01

    This paper presents the results of the first application of Doppler Imaging to solar-type contact binaries. Our aim was to examine whether this technique can help discriminate between various types of surface inhomogeneities (dark vs. bright star-spots) which are produced by different physical processes and which affect not only the surface brightness distribution but also the system's secular evolution. Simultaneous high dispersion spectroscopy and photometry for the systems AE Phe and YY Eri were obtained at ESO using the Coude Auxiliary Telescope (CAT) and the 50 cm telescope. The observed light-curves were solved by means of the latest version of the Wilson-Devinney program. Doppler maps were constructed taking into account the effects of fast rotation and proximity of the system's components. Doppler maps reveal the presence of dark spots on both systems. For AE Phe, this result is in agreement with the light-curve solution. Indirect evidence of enhanced chromospheric emission is also found. This emission appears to be more intense on the primary components.

  11. Roche tomography of cataclysmic variables - VII. The long-term magnetic activity of AE Aqr

    NASA Astrophysics Data System (ADS)

    Hill, C. A.; Watson, C. A.; Steeghs, D.; Dhillon, V. S.; Shahbaz, T.

    2016-06-01

    We present a long-term study of the secondary star in the cataclysmic variable AE Aqr, using Roche tomography to indirectly image starspots on the stellar surface spanning 8 years of observations. The seven maps show an abundance of spot features at both high and low latitudes. We find that all maps have at least one large high-latitude spot region, and we discuss its complex evolution between maps, as well as its compatibility with current dynamo theories. Furthermore, we see the apparent growth in fractional spot coverage, fs, around 45° latitude over the duration of observations, with a persistently high fs near latitudes of 20°. These bands of spots may form as part of a magnetic activity cycle, with magnetic flux tubes emerging at different latitudes, similar to the `butterfly' diagram for the Sun. We discuss the nature of flux tube emergence in close binaries, as well as the activity of AE Aqr in the context of other stars.

  12. Sodium Laser Guide Star Adaptive Optics Imaging Polarimetry of Herbig Ae/Be Stars

    SciTech Connect

    Perrin, M D; Graham, J R; Lloyd, J P; Kalas, P; Gates, E L; Gavel, D T; Pennington, D M; Max, C E

    2004-01-08

    The future of high-resolution ground-based optical and infrared astronomy requires the successful implementation of laser guide star adaptive optics systems. We present the first science results from the Lick Observatory sodium beacon laser guide star system. By coupling this system to a near-infrared (J;H;Ks bands) dual-channel imaging polarimeter, we achieve very high sensitivity to light scattered in the circumstellar enviroment of Herbig Ae/Be stars on scales of 100-300 AU. Observations of LkH{alpha} 198 reveal a highly polarized, biconical nebula 10 arcseconds in diameter (6000 AU) . We also observe a polarized jet-like feature associated with the deeply embedded source LkH{alpha} 198-IR. The star LkH{alpha} 233 presents a narrow, unpolarized dark lane dividing its characteristic butterfly-shaped polarized reflection nebulosity. This linear structure is oriented perpendicular to an optical jet and bipolar cavity and is consistent with the presence of an optically thick circumstellar disk blocking our direct view of the star. These data suggest that the evolutionary picture developed for the lower-mass T Tauri stars is also relevant to the Herbig Ae/Be stars and demonstrate the ability of laser guide star adaptive optics systems to obtain scientific results competitive with natural guide star adaptive optics or space-based telescopes.

  13. On the embedding-dimension analysis of AE and AL time series

    NASA Technical Reports Server (NTRS)

    Shan, Lin-Hua; Goertz, Christoph; Smith, Robert A.

    1991-01-01

    Several authors have employed the embedding-dimension method to analyze time series of geomagnetic indices, with differing results for the value of the correlation dimension nu. It is argued that these differences may arise from corresponding differences in the length and construction of the various data sets used. Practical application of the method to sets of discretized data requires use of a delay time scale set by the autocorrelation time of the data set. It is found that a particular data set containing 35 days of AE exhibits an autocorrelation time tau(c) longer by an order of magnitude than that of a short-duration (less than 5 days) set, raising the possibility that extant analyses of long-duration sets may have employed delay times shorter than tau(c). In addition, the power spectrum of AE reveals modulation at a period of 24 hr. A numerical experiment on the logistic map shows that such modulation introduces an extra degree of freedom in the data, resulting in an augmented correlation dimension.

  14. NuSTAR AND SWIFT Observations of the Fast Rotating Magnetized White Dwarf AE Aquarii

    NASA Technical Reports Server (NTRS)

    Kitaguchi, Takao; An, Hongjun; Beloborodov, Andrei M.; Gotthelf, Eric V.; Hayashi, Takayuki; Kaspi, Victoria M.; Rana, Vikram R.; Boggs, Steven E.; Christensen, Finn E.; Craig, William W.; Hailey, Charles J.; Harrison, Fiona A.; Stern, Daniel; Zhang, Will W.

    2014-01-01

    AE Aquarii is a cataclysmic variable with the fastest known rotating magnetized white dwarf (P(sub spin) = 33.08 s). Compared to many intermediate polars, AE Aquarii shows a soft X-ray spectrum with a very low luminosity (LX (is) approximately 10(exp 31) erg per second). We have analyzed overlapping observations of this system with the NuSTAR and the Swift X-ray observatories in 2012 September. We find the 0.5-30 keV spectra to be well fitted by either an optically thin thermal plasma model with three temperatures of 0.75(+0.18 / -0.45), 2.29(+0.96 / -0.82), and 9.33 (+6.07 / -2.18) keV, or an optically thin thermal plasma model with two temperatures of 1.00 (+0.34 / -0.23) and 4.64 (+1.58 / -0.84) keV plus a power-law component with photon index of 2.50 (+0.17 / -0.23). The pulse profile in the 3-20 keV band is broad and approximately sinusoidal, with a pulsed fraction of 16.6% +/- 2.3%. We do not find any evidence for a previously reported sharp feature in the pulse profile.

  15. NuStar and Swift Observations of the Fast Rotating Magnetized White Dwarf AE Aquarii

    NASA Technical Reports Server (NTRS)

    Kitaguchi, Takao; An, Hongjun; Beloborodov, Andrei M.; Gotthelf, Eric V.; Hayashi, Takayuki; Kaspi, Victoria M.; Rana, Vikram R.; Boggs, Steven E.; Christensen, Finn E.; Craig, William W.; Hailey, Charles J.; Harrison, Fiona A.; Stern, Daniel; Zhang, Will W.

    2014-01-01

    AE Aquarii is a cataclysmic variable with the fastest known rotating magnetized white dwarf (P(sub spin) = 33.08 s). Compared to many intermediate polars, AE Aquarii shows a soft X-ray spectrum with a very low luminosity (LX (is) approximately 10(exp 31) erg per second). We have analyzed overlapping observations of this system with the NuSTAR and the Swift X-ray observatories in 2012 September. We find the 0.5-30 keV spectra to be well fitted by either an optically thin thermal plasma model with three temperatures of 0.75(+0.18 / -0.45), 2.29(+0.96 / -0.82), and 9.33 (+6.07 / -2.18) keV, or an optically thin thermal plasma model with two temperatures of 1.00 (+0.34 / -0.23) and 4.64 (+1.58 / -0.84) keV plus a power-law component with photon index of 2.50 (+0.17 / -0.23). The pulse profile in the 3-20 keV band is broad and approximately sinusoidal, with a pulsed fraction of 16.6% +/- 2.3%. We do not find any evidence for a previously reported sharp feature in the pulse profile.

  16. Trafficking defect of mutant kidney anion exchanger 1 (kAE1) proteins associated with distal renal tubular acidosis and Southeast Asian ovalocytosis.

    PubMed

    Sawasdee, Nunghathai; Udomchaiprasertkul, Wandee; Noisakran, Sansanee; Rungroj, Nanyawan; Akkarapatumwong, Varaporn; Yenchitsomanus, Pa-thai

    2006-11-24

    Compound heterozygous anion exchanger 1 (AE1) SAO/G701D mutations result in distal renal tubular acidosis with Southeast Asian ovalocytosis. Interaction, trafficking and localization of wild-type and mutant (SAO and G701D) kAE1 proteins fused with hemagglutinin, six-histidine, Myc, or green fluorescence protein (GFP) were examined in human embryonic kidney (HEK) 293 cells. When individually expressed, wild-type kAE1 was localized at cell surface while mutant kAE1 SAO and G701D were intracellularly retained. When co-expressed, wild-type kAE1 could form heterodimer with kAE1 SAO or kAE1 G701D and could rescue mutant kAE1 proteins to express on the cell surface. Co-expression of kAE1 SAO and kAE1 G701D also resulted in heterodimer formation but intracellular retention without cell surface expression, suggesting their trafficking defect and failure to rescue each other to the plasma membrane, most likely the molecular mechanism of the disease in the compound heterozygous condition. PMID:17027918

  17. Implementation of the AES as a Hash Function for Confirming the Identity of Software on a Computer System

    SciTech Connect

    Hansen, Randy R.; Bass, Robert B.; Kouzes, Richard T.; Mileson, Nicholas D.

    2003-01-20

    This paper provides a brief overview of the implementation of the Advanced Encryption Standard (AES) as a hash function for confirming the identity of software resident on a computer system. The PNNL Software Authentication team chose to use a hash function to confirm software identity on a system for situations where: (1) there is limited time to perform the confirmation and (2) access to the system is restricted to keyboard or thumbwheel input and output can only be displayed on a monitor. PNNL reviewed three popular algorithms: the Secure Hash Algorithm - 1 (SHA-1), the Message Digest - 5 (MD-5), and the Advanced Encryption Standard (AES) and selected the AES to incorporate in software confirmation tool we developed. This paper gives a brief overview of the SHA-1, MD-5, and the AES and sites references for further detail. It then explains the overall processing steps of the AES to reduce a large amount of generic data-the plain text, such is present in memory and other data storage media in a computer system, to a small amount of data-the hash digest, which is a mathematically unique representation or signature of the former that could be displayed on a computer's monitor. This paper starts with a simple definition and example to illustrate the use of a hash function. It concludes with a description of how the software confirmation tool uses the hash function to confirm the identity of software on a computer system.

  18. Imaging genomics

    PubMed Central

    Thompson, Paul M.; Martin, Nicholas G.; Wright, Margaret J.

    2010-01-01

    Purpose of review Imaging genomics is an emerging field that is rapidly identifying genes that influence the brain, cognition, and risk for disease. Worldwide, thousands of individuals are being scanned with high-throughput genotyping (genome-wide scans), and new imaging techniques [high angular resolution diffusion imaging and resting state functional magnetic resonance imaging (MRI)] that provide fine-grained measures of the brain’s structural and functional connectivity. Along with clinical diagnosis and cognitive testing, brain imaging offers highly reproducible measures that can be subjected to genetic analysis. Recent findings Recent studies of twin, pedigree, and population-based datasets have discovered several candidate genes that consistently show small to moderate effects on brain measures. Many studies measure single phenotypes from the images, such as hippocampal volume, but voxel-wise genomic methods can plot the profile of genetic association at each 3D point in the brain. This exploits the full arsenal of imaging statistics to discover and replicate gene effects. Summary Imaging genomics efforts worldwide are now working together to discover and replicate many promising leads. By studying brain phenotypes closer to causative gene action, larger gene effects are detectable with realistic sample sizes obtainable from meta-analysis of smaller studies. Imaging genomics has broad applications to dementia, mental illness, and public health. PMID:20581684

  19. Genome databases

    SciTech Connect

    Courteau, J.

    1991-10-11

    Since the Genome Project began several years ago, a plethora of databases have been developed or are in the works. They range from the massive Genome Data Base at Johns Hopkins University, the central repository of all gene mapping information, to small databases focusing on single chromosomes or organisms. Some are publicly available, others are essentially private electronic lab notebooks. Still others limit access to a consortium of researchers working on, say, a single human chromosome. An increasing number incorporate sophisticated search and analytical software, while others operate as little more than data lists. In consultation with numerous experts in the field, a list has been compiled of some key genome-related databases. The list was not limited to map and sequence databases but also included the tools investigators use to interpret and elucidate genetic data, such as protein sequence and protein structure databases. Because a major goal of the Genome Project is to map and sequence the genomes of several experimental animals, including E. coli, yeast, fruit fly, nematode, and mouse, the available databases for those organisms are listed as well. The author also includes several databases that are still under development - including some ambitious efforts that go beyond data compilation to create what are being called electronic research communities, enabling many users, rather than just one or a few curators, to add or edit the data and tag it as raw or confirmed.

  20. Evaluation of the new radiation belt AE9/AP9/SPM model for a cislunar mission

    NASA Astrophysics Data System (ADS)

    Badavi, Francis F.; Walker, Steven A.; Santos Koos, Lindsey M.

    2014-09-01

    this time. From a mission planning point of view, this date is ideal as the predictable GCR exposure will be at a maximum, while the sporadic SEP will be at a minimum. In addition, it is anticipated that by 2020 a vehicle capable of launching a crew of four will be operationally ready. During the LEO-GEO transit, the crew and cargo vehicles will encounter exposure from trapped particles and attenuated GCR, followed by free space exposure due to GCR and SEP during solar active times. Within the trapped field, a challenge arises from properly calculating the amount of exposure acquired. Within this field, in the absence of SEP (i.e. solar quiet times), the vehicles will have to transit through an inner proton belt, an inner and outer electron belts, and an attenuated GCR field. There exist a number of models to define the intensities of the trapped particles during the quiet and active SEP. Among the more established trapped models are the historic and popular electron/proton AE8/AP8 model dating back to the 1980s, the historic and less popular electron/proton CRRES model dating back to 1990s, and the recently released electron/proton/space plasma AE9/AP9/SPM model. The AE9/AP9/SPM model is a major improvement over the older AE8/AP8 and CRRES models. This model is derived from numerous measurements acquired over four solar cycles dating back to the 1970s, roughly representing 40 years of data collection. In contrast, the older AE8/AP8 and CRRES models were limited to only a few months of measurements taken during the prior solar minima and maxima. In this work, within the trapped field, along the design trajectory of the crew vehicle, the AE9/AP9/SPM model is evaluated against the older AE8/AP8 model during solar quiet times. The analysis is then extended to the GCR dominated en-route, cislunar L2 space and return trajectories in order to provide cumulative exposure estimates to the crew vehicle for the duration of the entire mission.

  1. Aerosol absorption coefficient and Equivalent Black Carbon by parallel operation of AE31 and AE33 aethalometers at the Zeppelin station, Ny Ålesund, Svalbard

    NASA Astrophysics Data System (ADS)

    Eleftheriadis, Konstantinos; Kalogridis, Athina-Cerise; Vratolis, Sterios; Fiebig, Markus

    2016-04-01

    Light absorbing carbon in atmospheric aerosol plays a critical role in radiative forcing and climate change. Despite the long term measurements across the Arctic, comparing data obtained by a variety of methods across stations requires caution. A method for extracting the aerosol absorption coefficient from data obtained over the decades by filter based instrument is still under development. An IASOA Aerosol working group has been initiated to address this and other cross-site aerosol comparison opportunities. Continuous ambient measurements of EBC/light attenuation by means of a Magee Sci. AE-31 aethalometer operating at the Zeppelinfjellet station (474 m asl; 78°54'N, 11°53'E), Ny Ålesund, Svalbard, have been available since 2001 (Eleftheriadis et al, 2009), while a new aethalometer model (AE33, Drinovec et al, 2014) has been installed to operate in parallel from the same inlet since June 2015. Measurements are recorded by a Labview routine collecting all available parameters reported by the two instrument via RS232 protocol. Data are reported at 1 and 10 minute intervals as averages for EBC (μg m-3) and aerosol absorption coefficients (Mm-1) by means of routine designed to report Near Real Time NRT data at the EBAS WDCA database (ebas.nilu.no) Results for the first 6 month period are reported here in an attempt to evaluate comparative performance of the two instruments in terms of their response with respect to the variable aerosol load of light absorbing carbon during the warm and cold seasons found in the high arctic. The application of available conversion schemes for obtaining the absorption coefficient by the two instruments is found to demonstrate a marked difference in their output. During clean periods of low aerosol load (EBC < 30 ng m-3), the two instruments display a better agreement with regression slope for the 880 nm signal between the two at ~ 0.9 compared to a slope at ~ 0.6 during the period of higher absorbing carbon loads (400< EBC<30 ng m

  2. Listeria Genomics

    NASA Astrophysics Data System (ADS)

    Cabanes, Didier; Sousa, Sandra; Cossart, Pascale

    The opportunistic intracellular foodborne pathogen Listeria monocytogenes has become a paradigm for the study of host-pathogen interactions and bacterial adaptation to mammalian hosts. Analysis of L. monocytogenes infection has provided considerable insight into how bacteria invade cells, move intracellularly, and disseminate in tissues, as well as tools to address fundamental processes in cell biology. Moreover, the vast amount of knowledge that has been gathered through in-depth comparative genomic analyses and in vivo studies makes L. monocytogenes one of the most well-studied bacterial pathogens. This chapter provides an overview of progress in the exploration of genomic, transcriptomic, and proteomic data in Listeria spp. to understand genome evolution and diversity, as well as physiological aspects of metabolism used by bacteria when growing in diverse environments, in particular in infected hosts.

  3. Genome Informatics

    PubMed Central

    Winslow, Raimond L.; Boguski, Mark S.

    2005-01-01

    This article reviews recent advances in genomics and informatics relevant to cardiovascular research. In particular, we review the status of (1) whole genome sequencing efforts in human, mouse, rat, zebrafish, and dog; (2) the development of data mining and analysis tools; (3) the launching of the National Heart, Lung, and Blood Institute Programs for Genomics Applications and Proteomics Initiative; (4) efforts to characterize the cardiac transcriptome and proteome; and (5) the current status of computational modeling of the cardiac myocyte. In each instance, we provide links to relevant sources of information on the World Wide Web and critical appraisals of the promises and the challenges of an expanding and diverse information landscape. PMID:12750305

  4. Analysis of high-purity germanium dioxide by ETV-ICP-AES with preliminary concentration of trace elements.

    PubMed

    Medvedev, Nickolay S; Shaverina, Anastasiya V; Tsygankova, Alphiya R; Saprykin, Anatoly I

    2016-08-01

    The paper presents a combined technique of germanium dioxide analysis by inductively coupled plasma atomic emission spectrometry (ICP-AES) with preconcentration of trace elements by distilling off matrix and electrothermal (ETV) introduction of the trace elements concentrate into the ICP. Evaluation of metrological characteristics of the developed technique of high-purity germanium dioxide analysis was performed. The limits of detection (LODs) for 25 trace elements ranged from 0.05 to 20ng/g. The accuracy of proposed technique is confirmed by "added-found" («or spiking») experiment and comparing the results of ETV-ICP-AES and ICP-AES analysis of high purity germanium dioxide samples.

  5. The analysis of chlorine with other elements of interest in waste oil/fuels by ICP-AES

    SciTech Connect

    Tsourides, D.

    1998-12-31

    It has been said that there are more chemical analysis performed on oil/fuels than any other material. The sensitivity, linearity, multi-element capability, and relative freedom from matrix effects of ICP-AES makes it particularly suitable for elemental analysis of these samples. However, until recently the routine analysis of Chlorine had not been possible by ICP-AES. The addition of the Halogen elements, particularly Chlorine, to ICP-AES analysis is of importance to several industries that burn waste oil as fuel. The recycling and disposal of waste oil is closely regulated by metal and halogen content in all developed countries. In some countries, waste oil containing more than 1,000 ppm of Chlorine is considered hazardous waste. However, used oil may be burned as a fuel if it meets certain allowable limits. The paper describes the procedures for chlorine analysis by Inductively Coupled Plasma Atomic Emission Spectroscopy.

  6. Global Genomic Diversity of Human Papillomavirus 6 Based on 724 Isolates and 190 Complete Genome Sequences

    PubMed Central

    Jelen, Mateja M.; Chen, Zigui; Kocjan, Boštjan J.; Burt, Felicity J.; Chan, Paul K. S.; Chouhy, Diego; Combrinck, Catharina E.; Coutlée, François; Estrade, Christine; Ferenczy, Alex; Fiander, Alison; Franco, Eduardo L.; Garland, Suzanne M.; Giri, Adriana A.; González, Joaquín Víctor; Gröning, Arndt; Heidrich, Kerstin; Hibbitts, Sam; Hošnjak, Lea; Luk, Tommy N. M.; Marinic, Karina; Matsukura, Toshihiko; Neumann, Anna; Oštrbenk, Anja; Picconi, Maria Alejandra; Richardson, Harriet; Sagadin, Martin; Sahli, Roland; Seedat, Riaz Y.; Seme, Katja; Severini, Alberto; Sinchi, Jessica L.; Smahelova, Jana; Tabrizi, Sepehr N.; Tachezy, Ruth; Tohme, Sarah; Uloza, Virgilijus; Vitkauskiene, Astra; Wong, Yong Wee; Židovec Lepej, Snježana; Burk, Robert D.

    2014-01-01

    ABSTRACT Human papillomavirus type 6 (HPV6) is the major etiological agent of anogenital warts and laryngeal papillomas and has been included in both the quadrivalent and nonavalent prophylactic HPV vaccines. This study investigated the global genomic diversity of HPV6, using 724 isolates and 190 complete genomes from six continents, and the association of HPV6 genomic variants with geographical location, anatomical site of infection/disease, and gender. Initially, a 2,800-bp E5a-E5b-L1-LCR fragment was sequenced from 492/530 (92.8%) HPV6-positive samples collected for this study. Among them, 130 exhibited at least one single nucleotide polymorphism (SNP), indel, or amino acid change in the E5a-E5b-L1-LCR fragment and were sequenced in full. A global alignment and maximum likelihood tree of 190 complete HPV6 genomes (130 fully sequenced in this study and 60 obtained from sequence repositories) revealed two variant lineages, A and B, and five B sublineages: B1, B2, B3, B4, and B5. HPV6 (sub)lineage-specific SNPs and a 960-bp representative region for whole-genome-based phylogenetic clustering within the L2 open reading frame were identified. Multivariate logistic regression analysis revealed that lineage B predominated globally. Sublineage B3 was more common in Africa and North and South America, and lineage A was more common in Asia. Sublineages B1 and B3 were associated with anogenital infections, indicating a potential lesion-specific predilection of some HPV6 sublineages. Females had higher odds for infection with sublineage B3 than males. In conclusion, a global HPV6 phylogenetic analysis revealed the existence of two variant lineages and five sublineages, showing some degree of ethnogeographic, gender, and/or disease predilection in their distribution. IMPORTANCE This study established the largest database of globally circulating HPV6 genomic variants and contributed a total of 130 new, complete HPV6 genome sequences to available sequence repositories. Two HPV

  7. RHEED, AES and XPS studies of the passive films formed on ion implanted stainless steel

    SciTech Connect

    Clayton, C.R.; Doss, K.G.K.; Wang, Y.F.; Warren, J.B.; Hubler, G.K.

    1981-12-01

    P-implantation (10/sup 17/ ions cm/sup -2/, 40 KeV) into 304 stainless steel (ss) has been carried out, and an amorphous surface alloy was formed. Polarization studies in deaerated 1N H/sub 2/SO/sub 4/+ 2% NaCl showed that P-implantation improved both the general and localized corrosion resistance of 304 ss. A comparative study has been carried out between the implanted and unimplanted steel to determine what influence P-implantation has upon the properties of the passive film formed 1N H/sub 2/SO/sub 4/. The influence of Cl ions on pre-formed passive films was also studied. RHEED, XPS and AES were used to evaluate the nature of the passive films formed in these studies.

  8. The AE9/AP9/SPM Next Generation Radiation Specification Models - Progress Report

    NASA Astrophysics Data System (ADS)

    O'Brien, Paul; Johnston, William Robert; Huston, Stuart; Guild, Timothy

    2016-07-01

    The AE9/AP9/SPM model has now been released to the global satellite design community, with a recent update to version 1.2. We are working on incorporating new data sources, such as AZUR and NASA's Van Allen Probes, while also addressing critiques raised by the science and engineering communities. In particular, we are investigating discrepancies for protons at low altitude and electrons at geostationary altitudes. Finally, we are scoping out architectural improvements to enable features requested by industry: improved stitching between the plasma and radiation models, local time dependence in the plasma model, longitude dependence in the electron radiation model, and solar cycle variation in the low altitude protons. We provide a brief update on the status of the model, discrepancy investigations, and plans for the future.

  9. VizieR Online Data Catalog: SN 2010ae optical spectra (Stritzinger+, 2014)

    NASA Astrophysics Data System (ADS)

    Stritzinger, M. D.; Hsiao, E.; Valenti, S.; Taddia, F.; Rivera-Thorsen, T. J.; Leloudas, G.; Maeda, K.; Pastorello, A.; Phillips, M. M.; Pignata, G.; Baron, E.; Burns, C. R.; Contreras, C.; Folatelli, G.; Hamuy, M.; Hoeflich, P.; Morrell, N.; Prieto, J. L.; Benetti, S.; Campillay, A.; Haislip, J. B.; Laclutze, A. P.; Moore, J. P.; Reichart, D. E.

    2014-01-01

    With substantial target-of-opportunity (ToO) access on Gemini- South (+GMOS) and the VLT (+X-Shooter), along with visitor nights at the NTT (+EFOSC, SOFI), SOAR (+GOODMAN), and du Pont (+WFCCD) telescopes, a detailed time series of optical and NIR spectroscopy was obtained for SN 2010ae. The resulting early phase time series consists of 21 spectra covering 20 epochs of optical spectroscopy, extending from -2d to +57d relative to T(B)max, as well as eight NIR spectra covering seven epochs ranging from -1d to +18d. Additionally, at late phases a visual-wavelength spectrum was taken with the VLT (+FORS2) on +252d. (2 data files).

  10. ICP-AES Determination of Mineral Content in Boletus tomentipes Collected from Different Sites of China.

    PubMed

    Wang, Xue-mei; Zhang, Ji; Li, Tao; Li, Jie-qing; Wang, Yuan-zhong; Liu, Hong-gao

    2015-05-01

    P, Na, Ca, Cu, Fe, Mg, Zn, As, Cd, Co, Cr and Ni, contents have been examined in caps and stipes of Boletus tomentipes collected from different sites of Yunnan province, southwest China. The elements were determined using inductively coupled plasma atomic emission spectroscopy (ICP-AES) with microwave digestion. P, Ca, Mg, Fe, Zn and Cu were the most abundant amongst elements determined in Boletus tomentipes. The caps were richer in P, Mg, Zn and Cd, and the stipes in Ca, Co and Ni. Cluster analysis showed a difference between Puer (BT7 and BT8) and other places. The PCA explained about 77% of the total variance, and the minerals differentiating these places were P (PC1) together with Ca, Cu, Fe, Mg, As and Ni, Na (PC2) together with Cd, and Zn (PC3). The results of this study imply that element concentrations of a mushroom are mutative when collected from the different bedrock soil geochemistry. PMID:26415467

  11. Asphodosides A-E, anti-MRSA metabolites from Asphodelus microcarpus

    PubMed Central

    Ghoneim, Mohammed M.; Elokely, Khaled M.; El-Hela, Atef A.; Mohammad, Abd-Elsalam I.; Jacob, Melissa; Radwan, Mohamed M.; Doerksen, Robert J.; Cutler, Stephen J.; Ross, Samir A.

    2016-01-01

    Bioassay guided fractionation of the ethanolic extract of Asphodelus microcarpus Salzm. et Viv. (Xanthorrhoeaceae or Asphodelaceae) resulted in isolation of five compounds identified as asphodosides A-E (1–5). Compounds 2–4 showed activity against methicillin resistant Staphylococcus aureus (MRSA) with IC50 values of 1.62, 7.0 and 9.0 μg/mL, respectively. They also exhibited activity against Staphylococcus aureus (non-MRSA) with IC50 values of 1.0, 3.4 and 2.2 μg/mL, respectively. The structure elucidation of isolated metabolites was carried out using spectroscopic data (1D and 2D NMR), optical rotation and both experimental and calculated electronic circular dichroism (ECD). PMID:25034614

  12. ICP-AES Determination of Mineral Content in Boletus tomentipes Collected from Different Sites of China.

    PubMed

    Wang, Xue-mei; Zhang, Ji; Li, Tao; Li, Jie-qing; Wang, Yuan-zhong; Liu, Hong-gao

    2015-05-01

    P, Na, Ca, Cu, Fe, Mg, Zn, As, Cd, Co, Cr and Ni, contents have been examined in caps and stipes of Boletus tomentipes collected from different sites of Yunnan province, southwest China. The elements were determined using inductively coupled plasma atomic emission spectroscopy (ICP-AES) with microwave digestion. P, Ca, Mg, Fe, Zn and Cu were the most abundant amongst elements determined in Boletus tomentipes. The caps were richer in P, Mg, Zn and Cd, and the stipes in Ca, Co and Ni. Cluster analysis showed a difference between Puer (BT7 and BT8) and other places. The PCA explained about 77% of the total variance, and the minerals differentiating these places were P (PC1) together with Ca, Cu, Fe, Mg, As and Ni, Na (PC2) together with Cd, and Zn (PC3). The results of this study imply that element concentrations of a mushroom are mutative when collected from the different bedrock soil geochemistry.

  13. [Determination of harmful elements in various fish tissues by ICP-AES].

    PubMed

    He, Jin-Zhe; Liu, Wen-Han; Yang, Kai; Wu, Hao

    2007-06-01

    Twelve kinds of fish tissues were wetly decomposed and the harmful elements of Cd, As, Pb and Hg were determined by ICP-AES method in the present paper. The techniques for operating ICP instrument were optimized, spectral interference for elements in special wavelength range was studied, and the correction factor of IECs model was established. The results indicated that the signal to noise ratio and detection limit for elements with higher ionization potential energy may be improved by increasing the radio generator power properly and reducing the nebulizer pressure. There were Cr, Cu, As, Sn and Na elements that mainly disturbed the determined elements such as As (189.042 nm), Pb (220.353 nm), Cd (228.802 nm) and Hg (184.950 nm). The primary contaminating elements in tissues of freshwater fish and seawater fish were Pb and As respectively.

  14. Characterization of new and degraded mirrors with AES, ESCA and SIMS

    NASA Astrophysics Data System (ADS)

    Pederson, L. R.; Thomas, M. T.

    1980-09-01

    Samples representing each production stage of second surface mirrors for solar energy concentrators were examined by AES, ESCA, and SIMS along with ion sputtering. Significant weathering occurred on a 6-month-old soda-lime-silicate glass that was intended for use in the Barstow solar pilot plant. Further glass-water reactions occurred during the silvering step, which was demonstrated by the detection of deuterium in the glass on mirrors made from D2O silver solutions. In addition, diffusion of silver into the glass matrix was observed, even on freshly prepared mirrors. On degraded specimens, sulfur was strongly associated with the reacting edge of the copper films, while chloride was similarly associated with the silver films, implying that these elements are important corrosive agents.

  15. [Analysis of rare earth elements in pu'er tea of Yunnan by ICP-AES].

    PubMed

    Ning, Peng-bo; Gong, Chun-mei; Zhang, Yan-ming; Guo, Kang-kang

    2010-10-01

    The 150 samples of pu'er tea collected from the main producing area of Yunnan were detected by ICP-AES method, to investigate the current safety status of pu'er tea rare earth elements. The rare earth elements contents were found to be in the range 0.26-4.07 mg x kg(-1) in all detected samples, with the 43.0% samples exceeding the maximum levels of contaminants of 2 mg x kg(-1) set by GB 2762-2005 "Maximum levels of contaminants in foods". There was a significant difference between ripened tea rare earth elements and raw tea's from the same sources, which affected some ripened tea quality at last. There was a significant difference among the rare earth elements contents of the pu'er tea main producing areas, and the condition of pu'er tea quality and safety controlling was not optimistic at individual producing areas.

  16. The FUSE satellite is prepped for prelaunch processing at Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    At Hangar AE, Cape Canaveral Air Station, NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite stands alone after workstands have been removed. As part of prelaunch processing, FUSE will undergo a functional test of its systems, followed by installation of the flight batteries and solar arrays. Tests are also scheduled for the communications and data systems linking FUSE with the spacecraft control center at The Johns Hopkins University, Baltimore, Md. FUSE was developed and will be operated by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md. FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. The launch aboard a Boeing Delta II rocket is targeted for May 20 at Launch Complex 17.

  17. The FUSE satellite is prepped for prelaunch processing at Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    Workers in Hangar AE, Cape Canaveral Air Station, begin removing the plastic covering from NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite before prelaunch processing. FUSE will undergo a functional test of its systems, followed by installation of the flight batteries and solar arrays. Tests are also scheduled for the communications and data systems linking FUSE with the spacecraft control center at The Johns Hopkins University, Baltimore, Md. FUSE was developed and will be operated by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md. FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. The launch aboard a Boeing Delta II rocket is targeted for May 20 at Launch Complex 17.

  18. The FUSE satellite is prepped for prelaunch processing at Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    Workers in Hangar AE, Cape Canaveral Air Station, get ready to remove the protective shipping cover from NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite for prelaunch processing. FUSE will undergo a functional test of its systems, followed by installation of the flight batteries and solar arrays. Tests are also scheduled for the communications and data systems linking FUSE with the spacecraft control center at The Johns Hopkins University, Baltimore, Md. FUSE was developed and will be operated by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md. FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. The launch aboard a Boeing Delta II rocket is targeted for May 20 at Launch Complex 17.

  19. The FUSE satellite is prepped for prelaunch processing at Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    At Hangar AE, Cape Canaveral Air Station, NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite is unveiled before prelaunch processing. FUSE will undergo a functional test of its systems, followed by installation of the flight batteries and solar arrays. Tests are also scheduled for the communications and data systems linking FUSE with the spacecraft control center at The Johns Hopkins University, Baltimore, Md. FUSE was developed and will be operated by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md. FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. The launch aboard a Boeing Delta II rocket is targeted for May 20 at Launch Complex 17.

  20. New isoprenylated flavones, artochamins A--E, and cytotoxic principles from Artocarpus chama.

    PubMed

    Wang, Yong-Hong; Hou, Ai-Jun; Chen, Lei; Chen, Dao-Feng; Sun, Han-Dong; Zhao, Qin-Shi; Bastow, Kenneth F; Nakanish, Yuka; Wang, Xi-Hong; Lee, Kuo-Hsiung

    2004-05-01

    Five new isoprenylated flavones, artochamins A-E (1-5), together with eight known flavones (6-13), were isolated from the roots of Artocarpus chama. All structures were elucidated by spectroscopic methods. Artonin E (12) showed strong cytotoxicity against 1A9 (ovarian), significant activity against MCF-7 (breast adenocarcinoma), and moderate activity against HCT-8 (ileocecal) and MDA-MB-231 (breast adenocarcinoma) tumor cell lines. Artochamin C (3) was more potent against MCF-7, 1A9, HCT-8, and SK-MEL-2 (melanoma) than A549 (lung carcinoma), KB (epidermoid carcinoma of the nasopharynx), and its drug-resistant (KB-VIN) variant. Artocarpin (6) displayed weak but relatively broad inhibitory effects compared with 3 and 12.

  1. Disk wind and magnetospheric accretion in emission from the Herbig Ae star MWC 480

    NASA Astrophysics Data System (ADS)

    Tambovtseva, L. V.; Grinin, V. P.; Potravnov, I. S.; Mkrtichian, D. E.

    2016-09-01

    The young Herbig Ae star MWC 480 (HD 31648) is one of the comprehensively spectroscopically studied stars in the ultraviolet, optical, and infrared spectral ranges. Using non-LTE modeling of its hydrogen spectrum, we have calculated the contribution to the hydrogen emission from such important regions of the circumstellar environment as the disk wind and the magnetosphere. We have used our own observations of the stellar spectrum performed with the 2.4-m telescope at the Thai National Observatory to quantitatively check our theoretical calculations. In addition, all of the visible and infrared spectra available in the literature have been used for a qualitative comparison. The modeling results have revealed a significant role of the magneto-centrifugal disk wind in the formation of atomic hydrogen emission. The cause of the emission line variability in the spectrum ofMWC 480 is discussed.

  2. Chondrosterins A-E, triquinane-type sesquiterpenoids from soft coral-associated fungus Chondrostereum sp.

    PubMed

    Li, Hou-Jin; Xie, Ying-Lu; Xie, Zhong-Liang; Chen, Ying; Lam, Chi-Keung; Lan, Wen-Jian

    2012-03-01

    The marine fungus Chondrostereum sp. was collected from a soft coral Sarcophyton tortuosum from the South China Sea. This fungus was cultured in potato dextrose broth medium and the culture broth was extracted with EtOAc. Five new triquinane-type sesquiterpenoids, chondrosterins A-E (1-5), and the known sesquiterpenoid hirsutanol C (6), were isolated. The structures were elucidated mainly on the basis of NMR, MS, and X-ray single-crystal diffraction data. Chondrosterin A (1) showed significant cytotoxic activities against cancer lines A549, CNE2, and LoVo with IC(50) values of 2.45, 4.95, and 5.47 μM, respectively.

  3. DIAGNOSING MASS FLOWS AROUND HERBIG Ae/Be STARS USING THE HE I λ10830 LINE

    SciTech Connect

    Cauley, P. Wilson; Johns-Krull, Christopher M. E-mail: cmj@rice.edu

    2014-12-20

    We examine He I λ10830 profile morphologies for a sample of 56 Herbig Ae/Be stars (HAEBES). We find significant differences between HAEBES and classical T-Tauri stars (CTTS) in the statistics of both blueshifted absorption (i.e., mass outflows) and redshifted absorption features (i.e., mass infall or accretion). Our results suggest that, in general, Herbig Be (HBe) stars do not accrete material from their inner disks in the same manner as CTTS, which are believed to accrete material via magnetospheric accretion, whereas Herbig Ae (HAe) stars generally show evidence for magnetospheric accretion. We find no evidence in our sample of narrow blueshifted absorption features, which are typical indicators of inner disk winds and are common in He I λ10830 profiles of CTTS. The lack of inner-disk-wind signatures in HAEBES, combined with the paucity of detected magnetic fields on these objects, suggests that accretion through large magnetospheres that truncate the disk several stellar radii above the surface is not as common for HAe and late-type HBe stars as it is for CTTS. Instead, evidence is found for smaller magnetospheres in the maximum redshifted absorption velocities in our HAEBE sample. These velocities are, on average, a smaller fraction of the system escape velocity than is found for CTTS, suggesting accretion is taking place closer to the star. Smaller magnetospheres, and evidence for boundary layer accretion in HBe stars, may explain the less common occurrence of redshifted absorption in HAEBES. Evidence is found that smaller magnetospheres may be less efficient at driving outflows compared to CTTS magnetospheres.

  4. Comparison between the polar cap index, PC and the auroral electrojet indices AE, AL, and AU

    SciTech Connect

    Vennerstrom, S.; Friis-Christensen, E. ); Troshichev, O.A.; Andresen, V.G. )

    1991-01-01

    The newly introduced index PC for magnetic activity in the polar cap has been examined to establish to which extent it can serve as an indicator of auroral electrojet activity. PC is derived from a single nearpole station, as a 15-min average index. The authors have derived it for two stations, one in the northern hemisphere (Thule) and one in the southern hemisphere (Vostok). The simplicity of the PC index enables us to make a large data base for statistical investigations. They have thus used 7 years of PC values for the two stations to analyze the relationship between PC and the auroral zone indices AE, AU, and AL statistically. They find a very high correlation between PC and AE during winter and equinox, the linear correlation coefficient being {approximately} 0.8-0.9 for Thule and {approximately} 0.7-0.8 for Vostok. During summer the correlation is less because the PC index is then disturbed by polar cap currents controlled by the northward and east-west components of the interplanetary magnetic field. They therefore stress the importance of having PC available from both the northern and southern hemisphere. From event studies they find that PC is sensitive both to DP 2 type electrojet activity and to substorm intensifications of the westward electrojet in the midnight or postmidnight sector but less sensitive to substorm intensifications of the westward electrojet in the midnight or post midnight sector. They conclude that PC can serve as a fast available indicator of DP 2 and DP 1 activity in the polar regions, excluding intrusions of the westward electrojet in the premidnight sector.

  5. The magnetic field of the pre-main sequence Herbig Ae star HD 190073

    NASA Astrophysics Data System (ADS)

    Catala, C.; Alecian, E.; Donati, J.-F.; Wade, G. A.; Landstreet, J. D.; Böhm, T.; Bouret, J.-C.; Bagnulo, S.; Folsom, C.; Silvester, J.

    2007-01-01

    Context: The general context of this paper is the study of magnetic fields in the pre-main sequence intermediate mass Herbig Ae/Be stars. Magnetic fields are likely to play an important role in pre-main sequence evolution at these masses, in particular in controlling the gains and losses of stellar angular momentum. Aims: The particular aim of this paper is to announce the detection of a structured magnetic field in the Herbig Ae star HD 190073, and to discuss various scenarii for the geometry of the star, its environment and its magnetic field. Methods: We have used the ESPaDOnS spectropolarimeter at CFHT in 2005 and 2006 to obtain high-resolution, high signal-to-noise circular polarization spectra which demonstrate unambiguously the presence of a magnetic field in the photosphere of this star. Results: Nine circular polarization spectra were obtained, each one showing a clear Zeeman signature. This signature is suggestive of a magnetic field structured on large scales. The signature, which corresponds to a longitudinal magnetic field of 74± 10 G, does not vary detectably on a one-year timeframe, indicating either an azimuthally symmetric field, a zero inclination angle between the rotation axis and the line of sight, or a very long rotation period. The optical spectrum of HD 190073 exhibits a large number of emission lines. We discuss the formation of these emission lines in the framework of a model involving a turbulent heated region at the base of the stellar wind, possibly powered by magnetic accretion. Conclusions: .This magnetic detection contributes an important new observational discovery which will aid our understanding of stellar magnetism at intermediate masses. Based on observations obtained at the Canada-France-Hawaii Telescope (CFHT) which is operated by the National Research Council of Canada, the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique of France, and the University of Hawaii.

  6. Chandra X-Ray Observatory's Radiation Environment and the AP-8/AE-8 Model

    NASA Technical Reports Server (NTRS)

    Virani, S. N.; Plucinsky, P. P.; Butt, Y. M.; Mueller-Mellin, R.

    2000-01-01

    The Chandra X-ray Observatory (CXO) was launched on July 23, 1999 and reached its final orbit on August 7, 1999. The CXO is in a highly elliptical orbit, approximately 140,000 km x 10,000 km, and has a period of roughly 63.5 hours (approx. 2.6 days). It transits the Earth's Van Allen belts once per orbit during which no science observations can be performed due to the high radiation environment. The Chandra X-ray Observatory Center (CXC) currently uses the National Space Science Data Center's "near Earth" AP-8/AE-8 radiation belt model to predict the start and end times of passage through the radiation belts. However, our scheduling software only uses a simple dipole model of the Earth's magnetic field. The resulting B, L magnet coordinates, do not always give sufficiently accurate predictions of the start and end times of transit of the Van Allen belts. We show this by comparing to the data from Chandra's on-board radiation monitor, the EPHIN (Electron, Proton, Helium Instrument particle detector) instrument. We present evidence that demonstrates this mis- of the radiation belts as well as data that also demonstrate the significant variability of one radiation belt transit to the next as experienced by the CXO. We present an explanation for why the dipole implementation of the AP-8/AE-8 gives inaccurate results. We are also investigating use of the Magnetospheric Specification and Forecast Model (MSM) - a model that also accounts for radiation belt variability and geometry.

  7. Chandra X-ray Observatory's radiation environment and the AP-8/AE-8 model

    NASA Astrophysics Data System (ADS)

    Virani, Shanil N.; Mueller-Mellin, Reinhold; Plucinsky, Paul P.; Butt, Yousaf M.

    2000-07-01

    The Chandra X-ray Observatory (CXO) was launched on July 23, 1999 and reached its final orbit on August 7, 1999. The CXO is in a highly elliptical orbit, approximately 140,000 km X 10,000 km, and has a period of approximately 63.5 hours (approximately equals 2.65 days). It transits the Earth's Van Allen belts once per orbit during which no science observations can be performed due to the high radiation environment. The Chandra X-ray Observatory Center currently uses the National Space Science Data Center's `near Earth' AP-8/AE-8 radiation belt model to predict the start and end times of passage through the radiation belts. However, our scheduling software uses only a simple dipole model of the Earth's magnetic field. The resulting B, L magnetic coordinates, do not always give sufficiently accurate predictions of the start and end times of transit of the Van Allen belts. We show this by comparing to the data from Chandra's on-board radiation monitor, the EPHIN (Electron, Proton, Helium Instrument particle detector) instrument. We present evidence that demonstrates this mis-timing of the outer electron radiation belt as well as data that also demonstrate the significant variability of one radiation belt transit to the next as experienced by the CXO. We also present an explanation for why the dipole implementation of the AP-8/AE-8 model is not ideally suited for the CXO. Lastly, we provide a brief discussion of our on-going efforts to identify a model that accounts for radiation belt variability, geometry, and one that can be used for observation scheduling purposes.

  8. Prescribing the Kp, AE and Dst Response Using the Magnetospheric State Technique

    NASA Astrophysics Data System (ADS)

    Fung, S. F.; Van Artsdalen, K. J.; Shao, X.

    2014-12-01

    The magnetosphere exhibits a variety of geomagnetic activities in response to different solar wind and interplanetary magnetic field (IMF) input. Global-scale geomagnetic activities, such as those due to substorms and storms, are reflected in the Kp, AE and Dst indices, which are constructed from ground-based magnetometer observations. Understanding how and the conditions under which a geomagnetic storm or substorm occurs are outstanding questions in heliophysics and space weather predication. While it is generally accepted that Earth-directed coronal mass ejections from the sun can cause geomagnetic storms and substorms in the magnetosphere, the specific necessary and sufficient conditions, in terms of both the solar wind drivers and pre-existing magnetospheric conditions, for triggering different types of geomagnetic activities are yet to be delineated. For example, while it is generally thought that geomagnetic storms can be triggered by extended intervals of southward IMF Bz, it is still not clear how and at what point during the southward-IMF Bz interval a storm will arise, and how the storm-triggering process may be affected by the pre-existing state of the magnetosphere. To address these specific questions, we have applied the magnetospheric state prescription technique developed by Fung and Shao [2008]. We have used solar wind and geomagnetic indices data taken in 1970-2009 to constructed a magnetospheric state lookup table and applied the table to perform out-of-sample predictions or prescriptions of the Kp, AE and Dst indices during different geomagnetic storm intervals (with minimum Dst ≤ -100 nT) that occurred after 2009. Our presentation will discuss the validity of the magnetospheric state prescription technique and the role of different magnetopsheric state parameters in prescribing geomagnetic storm development. Fung, S. F. and X. Shao, Specification of multiple geomagnetic responses to variable solar wind and IMF input, Ann. Geophys., 26, 639

  9. A high-resolution spectropolarimetric survey of Herbig Ae/Be stars - I. Observations and measurements

    NASA Astrophysics Data System (ADS)

    Alecian, E.; Wade, G. A.; Catala, C.; Grunhut, J. H.; Landstreet, J. D.; Bagnulo, S.; Böhm, T.; Folsom, C. P.; Marsden, S.; Waite, I.

    2013-02-01

    This is the first in a series of papers in which we describe and report the analysis of a large survey of Herbig Ae/Be stars in circular spectropolarimetry. Using the ESPaDOnS and Narval high-resolution spectropolarimeters at the Canada-France-Hawaii and Bernard Lyot Telescopes, respectively, we have acquired 132 circularly polarized spectra of 70 Herbig Ae/Be stars and Herbig candidates. The large majority of these spectra are characterized by a resolving power of about 65 000, and a spectral coverage from about 3700 Å to 1 μm. The peak signal-to-noise ratio per CCD pixel ranges from below 100 (for the faintest targets) to over 1000 (for the brightest). The observations were acquired with the primary aim of searching for magnetic fields in these objects. However, our spectra are suitable for a variety of other important measurements, including rotational properties, variability, binarity, chemical abundances, circumstellar environment conditions and structure, etc. In this paper, we describe the sample selection, the observations and their reduction, and the measurements that will comprise the basis of much of our following analysis. We describe the determination of fundamental parameters for each target. We detail the least-squares deconvolution (LSD) that we have applied to each of our spectra, including the selection, editing and tuning of the LSD line masks. We describe the fitting of the LSD Stokes I profiles using a multicomponent model that yields the rotationally broadened photospheric profile (providing the projected rotational velocity and radial velocity for each observation) as well as circumstellar emission and absorption components. Finally, we diagnose the longitudinal Zeeman effect via the measured circular polarization, and report the longitudinal magnetic field and Stokes V Zeeman signature detection probability. As an appendix, we provide a detailed review of each star observed.

  10. Far-infrared photometry and mapping of Herbig Ae/Be stars with ISO

    NASA Astrophysics Data System (ADS)

    Ábrahám, P.; Leinert, Ch.; Burkert, A.; Henning, Th.; Lemke, D.

    2000-02-01

    Seven Herbig Ae/Be stars were observed at mid- and far-infrared wavelengths with ISOPHOT, the photometer on-board the Infrared Space Observatory. At λ{<=}25μm, where the emission mainly arises from a compact circumstellar region, the observed spectral energy distributions can be described by power-law relationships between wavelength and flux density (Fnu {~}ν-n). The exponent of the power-law changes considerably among the stars, from n~0 for MWC 1080 to n~2.3 in the case of LkHα 234, with a typical value of around 1. Interpreting the observed power-law relationships in terms of circumstellar disks, in 5 out of 6 cases relatively shallow radial temperature distributions have to be assumed (T{~}r-q where 0.37{<=}q{<=}0.53). At longer wavelengths the observed emission is spatially extended, and in some cases significant discrepancy with IRAS was found due to beam size effects. The peak of the SEDs (in Fnu ) is typically at 60-100mu m, corresponding to temperatures of around 50 K. At λ>100μm the emission observed by ISOPHOT is never dominated by the Herbig Ae/Be stars. The most likely sources of the far-infrared radiation are dust cores of about 1 arcminute in size. The dust cores are probably located in the vicinity of the stars, and may be related to the star forming process. Based on observations with ISO, an ESA project with instruments funded by ESA member states (especially the P/I countries France, Germany, the Netherlands and the United Kingdom) with participation of ISAS and NASA.

  11. Comparative genomics - a perspective.

    PubMed

    Sivashankari, Selvarajan; Shanmughavel, Piramanayagam

    2007-03-27

    The rapidly emerging field of comparative genomics has yielded dramatic results. Comparative genome analysis has become feasible with the availability of a number of completely sequenced genomes. Comparison of complete genomes between organisms allow for global views on genome evolution and the availability of many completely sequenced genomes increases the predictive power in deciphering the hidden information in genome design, function and evolution. Thus, comparison of human genes with genes from other genomes in a genomic landscape could help assign novel functions for un-annotated genes. Here, we discuss the recently used techniques for comparative genomics and their derived inferences in genome biology.

  12. Comparative genomics - A perspective

    PubMed Central

    Sivashankari, Selvarajan; Shanmughavel, Piramanayagam

    2007-01-01

    The rapidly emerging field of comparative genomics has yielded dramatic results. Comparative genome analysis has become feasible with the availability of a number of completely sequenced genomes. Comparison of complete genomes between organisms allow for global views on genome evolution and the availability of many completely sequenced genomes increases the predictive power in deciphering the hidden information in genome design, function and evolution. Thus, comparison of human genes with genes from other genomes in a genomic landscape could help assign novel functions for un-annotated genes. Here, we discuss the recently used techniques for comparative genomics and their derived inferences in genome biology. PMID:17597925

  13. Genome cartography: charting the apicomplexan genome.

    PubMed

    Kissinger, Jessica C; DeBarry, Jeremy

    2011-08-01

    Genes reside in particular genomic contexts that can be mapped at many levels. Historically, 'genetic maps' were used primarily to locate genes. Recent technological advances in the determination of genome sequences have made the analysis and comparison of whole genomes possible and increasingly tractable. What do we see if we shift our focus from gene content (the 'inventory' of genes contained within a genome) to the composition and organization of a genome? This review examines what has been learned about the evolution of the apicomplexan genome as well as the significance and impact of genomic location on our understanding of the eukaryotic genome and parasite biology.

  14. Alteration of the Microbiota and Virulence Gene Expression in E. coli O157:H7 in Pig Ligated Intestine with and without AE Lesions

    PubMed Central

    Yu, Hai; Feng, Yanni; Ying, Xin; Gong, Joshua; Gyles, Carlton L.

    2015-01-01

    Background Previously we found that E. coli O157:H7 inoculated into ligated pig intestine formed attaching and effacing (AE) lesions in some pigs but not in others. The present study evaluated changes in the microbial community and in virulence gene expression in E. coli O157:H7 in ligated pig intestine in which the bacteria formed AE lesions or failed to form AE lesions. Methodology/Principal Findings The intestinal microbiota was assessed by RNA-based denaturing gradient gel electrophoresis (DGGE) analysis. The DGGE banding patterns showed distinct differences involving two bands which had increased intensity specifically in AE-negative pigs (AE- bands) and several bands which were more abundant in AE-positive pigs. Sequence analysis revealed that the two AE- bands belonged to Veillonella caviae, a species with probiotic properties, and Bacteroides sp. Concurrent with the differences in microbiota, gene expression analysis by quantitative PCR showed that, compared with AE negative pigs, E. coli O157:H7 in AE positive pigs had upregulated genes for putative adhesins, non-LEE encoded nleA and quorum sensing qseF, acid resistance gene ureD, and genes from the locus of enterocyte effacement (LEE). Conclusions/Significance The present study demonstrated that AE-positive pigs had reduced activities or populations of Veillonella caviae and Bacterioides sp. compared with AE-negative pigs. Further studies are required to understand how the microbiota was changed and the role of these organisms in the control of E. coli O157:H7. PMID:26090813

  15. 42 CFR 84.153 - Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

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  16. 42 CFR 84.153 - Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... APPROVAL OF RESPIRATORY PROTECTIVE DEVICES Supplied-Air Respirators § 84.153 Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements. (a) Airflow resistance will be... 42 Public Health 1 2014-10-01 2014-10-01 false Airflow resistance test, Type A and Type...

  17. 42 CFR 84.153 - Airflow resistance test, Type A and Type AE supplied-air respirators; minimum requirements.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

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  18. 75 FR 20591 - AES Sparrows Point LNG, LLC and Mid-Atlantic Express, LLC; Notice of Final General Conformity...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-20

    ... General Conformity Determination for Pennsylvania for the Proposed Sparrows Point LNG Terminal and... liquefied natural gas (LNG) import terminal and natural gas pipeline proposed by AES Sparrows Point LNG, LLC... quality impacts from the construction and operation of the following LNG terminal and natural gas...

  19. 75 FR 11169 - AES Sparrows Point LNG, LLC; Mid-Atlantic Express, LLC; Notice of Availability of the Revised...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-10

    ... Sparrows Point LNG Terminal and Pipeline Project March 1, 2010. The staff of the Federal Energy Regulatory... operation of a liquefied natural gas (LNG) import terminal and natural gas pipeline proposed by AES Sparrows... LNG terminal and natural gas pipeline facilities: A ship unloading facility, with two berths,...

  20. 75 FR 353 - AES Sparrows Point LNG, LLC and Mid-Atlantic Express, LLC; Notice of Availability of the Final...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-05

    ... Terminal and Pipeline Project December 29, 2009. The staff of the Federal Energy Regulatory Commission... natural gas (LNG) import terminal and natural gas pipeline proposed by AES Sparrows Point LNG, LLC and Mid... operation of the following LNG terminal and natural gas pipeline facilities: A ship unloading facility,...

  1. Undergraduate Observations of Separation and Position Angle of Double Stars ARY 6 AD and ARY 6 AE at Manzanita Observatory

    NASA Astrophysics Data System (ADS)

    Hoffert, Michael J.; Weise, Eric; Clow, Jenna; Hirzel, Jacquelyn; Leeder, Brett; Molyneux, Scott; Scutti, Nicholas; Spartalis, Sarah; Tokuhara, Corey

    2014-05-01

    Six beginning astronomy students, part of an undergraduate stellar astronomy course, one advanced undergraduate student assistant, and a professor measured the position angles and separations of Washington Double Stars (WDS) 05460 + 2119 (also known as ARY 6 AD and ARY 6 AE). The measurements were made at the Manzanita Observatory (116° 20'42" W, 32° 44' 5" N) of the Tierra Astronomical Institute on 10 Blackwood Rd. in Boulevard, California (www.youtube.com/watch?v=BHVdcMGBGDU), at an elevation of 4,500 ft. A Celestron 11" HD Edge telescope was used to measure the position angles and separations of ARY 6 AD and ARY 6 AE. The averages of our measurements are as follows: separation AD: trial 1 124.1 arcseconds and trial 2 124.5 arcseconds. The average of separation for AE: trial 1 73.3 arcseconds and trial 2 73.8 arcseconds. The averages of position angle for AD: trial 1 159.9 degrees and trial 2 161.3 degrees. The averages of position angle for AE: trial 1 232.6 degrees and trial 2 233.7 degrees.

  2. 19 CFR 4.76 - Procedures and responsibilities of carriers filing outbound vessel manifest information via the AES.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... filing of outbound vessel manifest information electronically (see, 15 CFR part 30). All sea carriers are... for AES are found at 15 CFR 30.60. A sea carrier certified to use the module that adheres to the procedures set forth in this section and the Census Regulations (15 CFR part 30) concerning the...

  3. 42 CFR 84.160 - Man test for gases and vapors; Type A and Type AE respirators; test requirements.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

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  4. 42 CFR 84.160 - Man test for gases and vapors; Type A and Type AE respirators; test requirements.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

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  5. 42 CFR 84.160 - Man test for gases and vapors; Type A and Type AE respirators; test requirements.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

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  6. 42 CFR 84.160 - Man test for gases and vapors; Type A and Type AE respirators; test requirements.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false Man test for gases and vapors; Type A and Type AE respirators; test requirements. 84.160 Section 84.160 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES OCCUPATIONAL SAFETY AND HEALTH RESEARCH AND RELATED ACTIVITIES APPROVAL OF RESPIRATORY PROTECTIVE DEVICES...

  7. 42 CFR 84.160 - Man test for gases and vapors; Type A and Type AE respirators; test requirements.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 42 Public Health 1 2013-10-01 2013-10-01 false Man test for gases and vapors; Type A and Type AE respirators; test requirements. 84.160 Section 84.160 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES OCCUPATIONAL SAFETY AND HEALTH RESEARCH AND RELATED ACTIVITIES APPROVAL OF RESPIRATORY PROTECTIVE DEVICES...

  8. 19 CFR 4.76 - Procedures and responsibilities of carriers filing outbound vessel manifest information via the AES.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... filing of outbound vessel manifest information electronically (see, 15 CFR part 30). All sea carriers are eligible to apply for participation in the Sea Carrier's Module. Application and certification procedures for AES are found at 15 CFR 30.60. A sea carrier certified to use the module that adheres to...

  9. 19 CFR 4.76 - Procedures and responsibilities of carriers filing outbound vessel manifest information via the AES.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... filing of outbound vessel manifest information electronically (see, 15 CFR part 30). All sea carriers are eligible to apply for participation in the Sea Carrier's Module. Application and certification procedures for AES are found at 15 CFR 30.60. A sea carrier certified to use the module that adheres to...

  10. Citrus Genomics

    PubMed Central

    Talon, Manuel; Gmitter Jr., Fred G.

    2008-01-01

    Citrus is one of the most widespread fruit crops globally, with great economic and health value. It is among the most difficult plants to improve through traditional breeding approaches. Currently, there is risk of devastation by diseases threatening to limit production and future availability to the human population. As technologies rapidly advance in genomic science, they are quickly adapted to address the biological challenges of the citrus plant system and the world's industries. The historical developments of linkage mapping, markers and breeding, EST projects, physical mapping, an international citrus genome sequencing project, and critical functional analysis are described. Despite the challenges of working with citrus, there has been substantial progress. Citrus researchers engaged in international collaborations provide optimism about future productivity and contributions to the benefit of citrus industries worldwide and to the human population who can rely on future widespread availability of this health-promoting and aesthetically pleasing fruit crop. PMID:18509486

  11. An EP4 antagonist ONO-AE3-208 suppresses cell invasion, migration, and metastasis of prostate cancer.

    PubMed

    Xu, Song; Zhang, Zhengyu; Ogawa, Osamu; Yoshikawa, Takeshi; Sakamoto, Hiromasa; Shibasaki, Noboru; Goto, Takayuki; Wang, Liming; Terada, Naoki

    2014-09-01

    EP4 is one of the prostaglandin E2 receptors, which is the most common prostanoid and is associated with inflammatory disease and cancer. We previously reported that over-expression of EP4 was one of the mechanisms responsible for progression to castration-resistant prostate cancer, and an EP4 antagonist ONO-AE3-208 in vivo suppressed the castration-resistant progression regulating the activation of androgen receptor. The aim of this study was to analyze the association of EP4 with prostate cancer metastasis and the efficacy of ONO-AE3-208 for suppressing the metastasis. The expression levels of EP4 mRNA were evaluated in prostate cancer cell lines, LNCaP, and PC3. EP4 over-expressing LNCaP was established, and their cell invasiveness was compared with the control LNCaP (LNCaP/mock). The in vitro cell proliferation, invasion, and migration of these cells were examined under different concentrations of ONO-AE3-208. An in vivo bone metastatic mouse model was constructed by inoculating luciferase expressing PC3 cells into left ventricle of nude mice. Their bone metastasis was observed by bioluminescent imaging with or without ONO-AE3-208 administration. The EP4 mRNA expression levels were higher in PC3 than in LNCaP, and EP4 over-expression of LNCaP cells enhanced their cell invasiveness. The in vitro cell invasion and migration were suppressed by ONO-AE3-208 in a dose-dependent manner without affecting cell proliferation. The in vivo bone metastasis of PC3 was also suppressed by ONO-AE3-208 treatment. EP4 expression levels were correlated with prostate cancer cell invasiveness and EP4 specific antagonist ONO-AE3-208 suppressed cell invasion, migration, and bone metastasis, indicating that it is a potential novel therapeutic modality for the treatment of metastatic prostate cancer.

  12. Simultaneous observations of reaction kinetics, creep behavior, and AE activities during syndeformational antigorite dehydration at high pressures

    NASA Astrophysics Data System (ADS)

    Kubo, T.; Iwasato, T.; Higo, Y.; Kato, T.; Kaneshima, S.; Uehara, S.; Koizumi, S.; Imamura, M.; Tange, Y.

    2015-12-01

    Intermediate-depth earthquakes are seismic activities in Wadati-Benioff zone at depths from 60 km to 300 km, where subducting plates deform plastically rather than brittle failure. Although it has been reported that unstable faulting occurred during antigorite dehydration even at higher pressures than ~2 GPa (e.g., Jung et al., 2009), the recent study by Chernak and Hirth (2011) revealed that the syndefromational antigorite dehydration does not produces stick-slip instabilities but stable fault slip. In the present study, we newly developed an AE monitoring system for high-pressure reaction-deformation processes combined with D-DIA and synchrotron monochromatic X-ray to observe reaction kinetics, creep behaviors, and AE activities simultaneously. We applied this technique to investigate shear instability during syndeformational antigorite dehydration. High-pressure deformation experiments were conducted up to ~8 GPa, ~1050 K, and strain rates of 3.4-9.2 x 10-5 s-1 in compression using a D-DIA type apparatus installed at BL-04B1, SPring-8. 50 keV mono X-ray were used to measure reaction kinetics and stress-strain data. To monitor shear instabilities by detecting AEs, six piezoelectric devices were positioned between first and second stage anvils of MA 6-6 type system. We used three kinds of starting materials of polycrystalline antigorite, fine-grained forsterite polycrystal, and two-phase mixtures of antigorite and San Carlos olivine (10%, 30%, and 50%atg). Clear contrasts were observed in AE activities between forsterite and antigorite samples. AE activities detected within the forsterite polycrystal suggested (semi) brittle behaviors at low pressures during the cold compression stage.
Almost no AEs were detected within the antigorite samples during any stages of cold compression, ramping, deformation, and syndeformational dehydration although localized deformation textures were observed in recovered samples. Instead, we detected some AEs outside the sample

  13. Ancient genomics

    PubMed Central

    Der Sarkissian, Clio; Allentoft, Morten E.; Ávila-Arcos, María C.; Barnett, Ross; Campos, Paula F.; Cappellini, Enrico; Ermini, Luca; Fernández, Ruth; da Fonseca, Rute; Ginolhac, Aurélien; Hansen, Anders J.; Jónsson, Hákon; Korneliussen, Thorfinn; Margaryan, Ashot; Martin, Michael D.; Moreno-Mayar, J. Víctor; Raghavan, Maanasa; Rasmussen, Morten; Velasco, Marcela Sandoval; Schroeder, Hannes; Schubert, Mikkel; Seguin-Orlando, Andaine; Wales, Nathan; Gilbert, M. Thomas P.; Willerslev, Eske; Orlando, Ludovic

    2015-01-01

    The past decade has witnessed a revolution in ancient DNA (aDNA) research. Although the field's focus was previously limited to mitochondrial DNA and a few nuclear markers, whole genome sequences from the deep past can now be retrieved. This breakthrough is tightly connected to the massive sequence throughput of next generation sequencing platforms and the ability to target short and degraded DNA molecules. Many ancient specimens previously unsuitable for DNA analyses because of extensive degradation can now successfully be used as source materials. Additionally, the analytical power obtained by increasing the number of sequence reads to billions effectively means that contamination issues that have haunted aDNA research for decades, particularly in human studies, can now be efficiently and confidently quantified. At present, whole genomes have been sequenced from ancient anatomically modern humans, archaic hominins, ancient pathogens and megafaunal species. Those have revealed important functional and phenotypic information, as well as unexpected adaptation, migration and admixture patterns. As such, the field of aDNA has entered the new era of genomics and has provided valuable information when testing specific hypotheses related to the past. PMID:25487338

  14. One-tube real-time isothermal amplification assay to identify and distinguish human immunodeficiency virus type 1 subtypes A, B, and C and circulating recombinant forms AE and AG.

    PubMed

    de Baar, M P; Timmermans, E C; Bakker, M; de Rooij, E; van Gemen, B; Goudsmit, J

    2001-05-01

    To halt the human immunodeficiency virus type 1 (HIV-1) epidemic requires interventions that can prevent transmission of numerous HIV-1 subtypes. The most frequently transmitted viruses belong to the subtypes A, B, and C and the circulating recombinant forms (CRFs) AE and AG. A fast one-tube assay that identifies and distinguishes among subtypes A, B, and C and CRFs AE and AG of HIV-1 was developed. The assay amplifies a part of the gag gene sequence of the genome of all currently known HIV-1 subtypes and can identify and distinguish among the targeted subtypes as the reaction proceeds, because of the addition of subtype-specific molecular beacons with multiple fluorophores. The combination of isothermal nucleic acid sequence-based amplification and molecular beacons is a new approach in the design of real-time assays. To obtain a sufficiently specific assay, we developed a new strategy in the design of molecular beacons, purposely introducing mismatches in the molecular beacons. The subtype A and CRF AG isolates reacted with the same molecular beacon. We tested the specificity and sensitivity of the assay on a panel of the culture supernatant of 34 viruses encompassing all HIV-1 subtypes: subtypes A through G, CRF AE and AG, a group O isolate, and a group N isolate. Assay sensitivity on this panel was 92%, with 89% correct subtype identification relative to sequence analysis. A linear relationship was found between the amount of input RNA in the reaction mixture and the time that the reaction became positive. The lower detection level of the assay was approximately 10(3) copies of HIV-1 RNA per reaction. In 38% of 50 serum samples from HIV-1-infected individuals with a detectable amount of virus, we could identify subtype sequences with a specificity of 94% by using sequencing and phylogenetic analysis as the "gold standard." In conclusion, we showed the feasibility of the approach of using multiple molecular beacons labeled with different fluorophores in

  15. Chloride Accumulators NKCC1 and AE2 in Mouse GnRH Neurons: Implications for GABAA Mediated Excitation.

    PubMed

    Taylor-Burds, Carol; Cheng, Paul; Wray, Susan

    2015-01-01

    A developmental "switch" in chloride transporters occurs in most neurons resulting in GABAA mediated hyperpolarization in the adult. However, several neuronal cell subtypes maintain primarily depolarizing responses to GABAA receptor activation. Among this group are gonadotropin-releasing hormone-1 (GnRH) neurons, which control puberty and reproduction. NKCC1 is the primary chloride accumulator in neurons, expressed at high levels early in development and contributes to depolarization after GABAA receptor activation. In contrast, KCC2 is the primary chloride extruder in neurons, expressed at high levels in the adult and contributes to hyperpolarization after GABAA receptor activation. Anion exchangers (AEs) are also potential modulators of responses to GABAA activation since they accumulate chloride and extrude bicarbonate. To evaluate the mechanism(s) underlying GABAA mediated depolarization, GnRH neurons were analyzed for 1) expression of chloride transporters and AEs in embryonic, pre-pubertal, and adult mice 2) responses to GABAA receptor activation in NKCC1-/- mice and 3) function of AEs in these responses. At all ages, GnRH neurons were immunopositive for NKCC1 and AE2 but not KCC2 or AE3. Using explants, calcium imaging and gramicidin perforated patch clamp techniques we found that GnRH neurons from NKCC1-/- mice retained relatively normal responses to the GABAA agonist muscimol. However, acute pharmacological inhibition of NKCC1 with bumetanide eliminated the depolarization/calcium response to muscimol in 40% of GnRH neurons from WT mice. In the remaining GnRH neurons, HCO3- mediated mechanisms accounted for the remaining calcium responses to muscimol. Collectively these data reveal mechanisms responsible for maintaining depolarizing GABAA mediated transmission in GnRH neurons. PMID:26110920

  16. Peptide-Based Optical uPAR Imaging for Surgery: In Vivo Testing of ICG-Glu-Glu-AE105

    PubMed Central

    Juhl, Karina; Christensen, Anders; Persson, Morten; Ploug, Michael; Kjaer, Andreas

    2016-01-01

    Near infrared intra-operative optical imaging is an emerging technique with clear implications for improved cancer surgery by enabling a more distinct delineation of the tumor margins during resection. This modality has the potential to increase the number of patients having a curative radical tumor resection. In the present study, a new uPAR-targeted fluorescent probe was developed and the in vivo applicability was evaluated in a human xenograft mouse model. Most human carcinomas express high level of uPAR in the tumor-stromal interface of invasive lesions and uPAR is therefore considered an ideal target for intra-operative imaging. Conjugation of the flourophor indocyanine green (ICG) to the uPAR agonist (AE105) provides an optical imaging ligand with sufficiently high receptor affinity to allow for a specific receptor targeting in vivo. For in vivo testing, human glioblastoma xenograft mice were subjected to optical imaging after i.v. injection of ICG-AE105, which provided an optimal contrast in the time window 6–24 h post injection. Specificity of the uPAR-targeting probe ICG-AE105 was demonstrated in vivo by 1) no uptake of unconjugated ICG after 15 hours, 2) inhibition of ICG-AE105 tumor uptake by a bolus injection of the natural uPAR ligand pro-uPA, and finally 3) the histological colocalization of ICG-AE105 fluorescence and immunohistochemical detected human uPAR on resected tumor slides. Taken together, our data supports the potential use of this probe for intra-operative optical guidance in cancer surgery to ensure complete removal of tumors while preserving adjacent, healthy tissue. PMID:26828431

  17. Spectroscopic signatures of magnetospheric accretion in Herbig Ae/Be stars. I. The case of HD 101412

    NASA Astrophysics Data System (ADS)

    Schöller, M.; Pogodin, M. A.; Cahuasquí, J. A.; Drake, N. A.; Hubrig, S.; Petr-Gotzens, M. G.; Savanov, I. S.; Wolff, B.; González, J. F.; Mysore, S.; Ilyin, I.; Järvinen, S. P.; Stelzer, B.

    2016-07-01

    Context. Models of magnetically-driven accretion and outflows reproduce many observational properties of T Tauri stars. This concept is not well established for the more massive Herbig Ae/Be stars. Aims: We intend to examine the magnetospheric accretion in Herbig Ae/Be stars and search for rotational modulation using spectroscopic signatures, in this first paper concentrating on the well-studied Herbig Ae star HD 101412. Methods: We used near-infrared spectroscopic observations of the magnetic Herbig Ae star HD 101412 to test the magnetospheric character of its accretion disk/star interaction. We reduced and analyzed 30 spectra of HD 101412, acquired with the CRIRES and X-shooter spectrographs installed at the VLT (ESO, Chile). The spectroscopic analysis was based on the He iλ10 830 and Paγ lines, formed in the accretion region. Results: We found that the temporal behavior of these diagnostic lines in the near-infrared spectra of HD 101412 can be explained by rotational modulation of line profiles generated by accreting gas with a period P = 20.53d±1.68d. The discovery of this period, about half of the magnetic rotation period Pm = 42.076d previously determined from measurements of the mean longitudinal magnetic field, indicates that the accreted matter falls onto the star in regions close to the magnetic poles intersecting the line-of-sight two times during the rotation cycle. We intend to apply this method to a larger sample of Herbig Ae/Be stars. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under programme IDs 087.C-0124(A), 088.C-0218(A,B,C,E), 090.C-0331(A), and 092.C-0126(A).

  18. Temporal Patterns of Abundance of Aedes aegypti and Aedes albopictus (Diptera: Culicidae) and Mitochondrial DNA Analysis of Ae. albopictus in the Central African Republic

    PubMed Central

    Kamgang, Basile; Ngoagouni, Carine; Manirakiza, Alexandre; Nakouné, Emmanuel; Paupy, Christophe; Kazanji, Mirdad

    2013-01-01

    The invasive Asian tiger mosquito Aedes albopictus (Diptera: Culicidae) was first reported in central Africa in 2000, in Cameroon, with the indigenous mosquito species Ae. aegypti (Diptera: Culicidae). Today, this invasive species is present in almost all countries of the region, including the Central African Republic (CAR), where it was first recorded in 2009. As invasive species of mosquitoes can affect the distribution of native species, resulting in new patterns of vectors and concomitant risk for disease, we undertook a comparative study early and late in the wet season in the capital and the main cities of CAR to document infestation and the ecological preferences of the two species. In addition, we determined the probable geographical origin of invasive populations of Ae. albopictus with two mitochondrial DNA genes, COI and ND5. Analysis revealed that Ae. aegypti was more abundant earlier in the wet season and Ae. albopictus in the late wet season. Used tyres were the most heavily colonized productive larval habitats for both species in both seasons. The invasive species Ae. albopictus predominated over the resident species at all sites in which the two species were sympatric. Mitochondrial DNA analysis revealed broad low genetic diversity, confirming recent introduction of Ae. albopictus in CAR. Phylogeographical analysis based on COI polymorphism indicated that the Ae. albopictus haplotype in the CAR population segregated into two lineages, suggesting multiple sources of Ae. albopictus. These data may have important implications for vector control strategies in central Africa. PMID:24349596

  19. Relating jet structure to photometric variability: the Herbig Ae star HD 163296

    NASA Astrophysics Data System (ADS)

    Ellerbroek, L. E.; Podio, L.; Dougados, C.; Cabrit, S.; Sitko, M. L.; Sana, H.; Kaper, L.; de Koter, A.; Klaassen, P. D.; Mulders, G. D.; Mendigutía, I.; Grady, C. A.; Grankin, K.; van Winckel, H.; Bacciotti, F.; Russell, R. W.; Lynch, D. K.; Hammel, H. B.; Beerman, L. C.; Day, A. N.; Huelsman, D. M.; Werren, C.; Henden, A.; Grindlay, J.

    2014-03-01

    Herbig Ae/Be stars are intermediate-mass pre-main sequence stars surrounded by circumstellar dust disks. Some are observed to produce jets, whose appearance as a sequence of shock fronts (knots) suggests a past episodic outflow variability. This "jet fossil record" can be used to reconstruct the outflow history. We present the first optical to near-infrared (NIR) spectra of the jet from the Herbig Ae star HD 163296, obtained with VLT/X-shooter. We determine the physical conditions in the knots and also their kinematic "launch epochs". Knots are formed simultaneously on either side of the disk, with a regular interval of ~16 yr. The velocity dispersion versus jet velocity and the energy input are comparable between both lobes. However, the mass-loss rate, velocity,and shock conditions are asymmetric. We find Ṁjet/Ṁacc ~ 0.01-0.1, which is consistent with magneto-centrifugal jet launching models. No evidence of any dust is found in the high-velocity jet, suggesting a launch region within the sublimation radius (<0.5 au). The jet inclination measured from proper motions and radial velocities confirms that it is perpendicular to the disk. A tentative relation is found between the structure of the jet and the photometric variability of the central source. Episodes of NIR brightening were previously detected and attributed to a dusty disk wind. We report for the first time significant optical fadings lasting from a few days up to a year, coinciding with the NIR brightenings. These are very likely caused by dust lifted high above the disk plane, and this supports the disk wind scenario. The disk wind is launched at a larger radius than the high-velocity atomic jet, although their outflow variability may have a common origin. No significant relation between outflow and accretion variability could be established. Our findings confirm that this source undergoes periodic ejection events, which may be coupled with dust ejections above the disk plane. Based on observations

  20. Multi-Window Classical Least Squares Multivariate Calibration Methods for Quantitative ICP-AES Analyses

    SciTech Connect

    CHAMBERS,WILLIAM B.; HAALAND,DAVID M.; KEENAN,MICHAEL R.; MELGAARD,DAVID K.

    1999-10-01

    The advent of inductively coupled plasma-atomic emission spectrometers (ICP-AES) equipped with charge-coupled-device (CCD) detector arrays allows the application of multivariate calibration methods to the quantitative analysis of spectral data. We have applied classical least squares (CLS) methods to the analysis of a variety of samples containing up to 12 elements plus an internal standard. The elements included in the calibration models were Ag, Al, As, Au, Cd, Cr, Cu, Fe, Ni, Pb, Pd, and Se. By performing the CLS analysis separately in each of 46 spectral windows and by pooling the CLS concentration results for each element in all windows in a statistically efficient manner, we have been able to significantly improve the accuracy and precision of the ICP-AES analyses relative to the univariate and single-window multivariate methods supplied with the spectrometer. This new multi-window CLS (MWCLS) approach simplifies the analyses by providing a single concentration determination for each element from all spectral windows. Thus, the analyst does not have to perform the tedious task of reviewing the results from each window in an attempt to decide the correct value among discrepant analyses in one or more windows for each element. Furthermore, it is not necessary to construct a spectral correction model for each window prior to calibration and analysis: When one or more interfering elements was present, the new MWCLS method was able to reduce prediction errors for a selected analyte by more than 2 orders of magnitude compared to the worst case single-window multivariate and univariate predictions. The MWCLS detection limits in the presence of multiple interferences are 15 rig/g (i.e., 15 ppb) or better for each element. In addition, errors with the new method are only slightly inflated when only a single target element is included in the calibration (i.e., knowledge of all other elements is excluded during calibration). The MWCLS method is found to be vastly

  1. Genome engineering with CRISPR-Cas9 in the mosquito Aedes aegypti.

    PubMed

    Kistler, Kathryn E; Vosshall, Leslie B; Matthews, Benjamin J

    2015-04-01

    The mosquito Aedes aegypti is a potent vector of the chikungunya, yellow fever, and dengue viruses, responsible for hundreds of millions of infections and over 50,000 human deaths per year. Mutagenesis in Ae. aegypti has been established with TALENs, ZFNs, and homing endonucleases, which require the engineering of DNA-binding protein domains to provide genomic target sequence specificity. Here, we describe the use of the CRISPR-Cas9 system to generate site-specific mutations in Ae. aegypti. This system relies on RNA-DNA base-pairing to generate targeting specificity, resulting in efficient and flexible genome-editing reagents. We investigate the efficiency of injection mix compositions, demonstrate the ability of CRISPR-Cas9 to generate different types of mutations via disparate repair mechanisms, and report stable germline mutations in several genomic loci. This work offers a detailed exploration into the use of CRISPR-Cas9 in Ae. aegypti that should be applicable to non-model organisms previously out of reach of genetic modification. PMID:25818303

  2. The variable Herbig Ae Star HR 5999. X - Its photometric 'pulse-shaped' variability

    NASA Technical Reports Server (NTRS)

    Perez, M. R.; Webb, J. R.; The, P. S.

    1992-01-01

    We present additional photometric observations (Stromgren y filter) of the Herbig Ae Star HR 5999. This new set of data, composed of 282 data points covering April 1983 to August 1989, was used in conjunction with the 362 data points compiled by Baade and Stahl (1989). Our aim was to detect single or multiple periods in the integrated set of data spanning nearly 20 yr. Through the use of series analysis techniques, and by removing any linear component present in the raw data, we were able to detect weak peaks in the power spectra (in the order of intensity the strongest peaks are at 301 and 113 d) which were not self-evident in the phase diagrams. The overall picture of the data shows a small linear component, which is more noticeable in the new set of data, indicating that the recent maxima appear brighter. By a detailed analysis of the full light curve we were able to detect the presence of well-defined 'pulses' or bursts. Further Gaussian fits of these bursts indicated that the pulses are relatively rapid, of the order of 10 d, with some of them being closely spaced. No periodicity was found for the pulses. A possible explanation of these aperiodic outbursts is that they detect a flow of matter accompanied by magnetic field disturbances originated from the interior of the star, unlike those originating externally such as binary perturbations, which tend to be periodic.

  3. The optical counterpart of IRAS 12496 - 7650 - A highly embedded Herbig AE star

    NASA Astrophysics Data System (ADS)

    Hughes, J. D.; Hartigan, P.; Graham, J. A.; Emerson, J. P.; Marang, F.

    1991-03-01

    Optical and near-infrared observations of IRAS 12496 - 7650, an active young star and the most luminous IRAS source in the Chamaeleon II dark cloud, are reported. The object has become brighter at optical wavelengths since 1976, and has exhibited variations of more than a magnitude at K between January 1987 and May 1990. IRAS 12496 - 7650 is redder when fainter, and the amplitude of the brightness fluctuations decreases toward longer infrared wavelengths. Differing amounts of circumstellar extinction or intrinsic color variations of the source can produce most of the observed variability. Optical spectra confirm that IRAS 12496 - 7650 is an extremely active (probably Herbig Ae type) star with blueshifted forbidden lines of O I and S II and a prominent P-Cygni profile at H-alpha. The S II emission extends 3-4 arcsec on either side of the star and shows a significant velocity gradient, suggestive of a jetlike structure. The detection of outflowing material from IRAS 12496 - 7650 reinforces earlier evidence that this object is the exciting source for the HH 52 - 54 group Herbig-Haro objects. The broad spectral energy distribution suggests that IRAS 12496 - 7650 has a circumstellar disk.

  4. [Study of microelements in plant's ash and environmental soil by microwave digestion ICP-AES].

    PubMed

    Zhang, Yu-Ling; Wang, Song-Jun; Wang, Pu-Jun; Cai, Yu

    2009-08-01

    A model MDS-2002A microwave digestion sample preparation system with auto control pressure in obturation was developed for the determination of microelements in clearing-up plant's ash and environment soil sample by ICP-AES. The authors discussed sample preparation result influenced by mixed acid system, scale of mixed acid dispensation, proportion between solid and liquid and time of microwave clearing. Excellent project was A2B1C2, work procedure 2 in microwave process. When the dispensation scale was 6 : 2 : 1 : 1 and mixed acid system was HNO3-HCl-HF-HClO4, the result was the best in 10 min of microwave clearing at highest power. The reagent was dried at constant temperature electric heating board, with its salinity being dissolved by aqua fortis. The method was validated through the soil (GBW07401) and plant (GBW07603) for national standard matter. The relative error of its result is between 0.00% and 7.14%, and the relative standard deviation is between 0.87% and 5.25%. The method is quick, handy, saving reagent and completely digesting in dealing with plant's ash and soil sample, and the accuracy and precision of results are satisfying.

  5. Mechanism of the Anticoagulant Activity of Thrombin Mutant W215A/E217A

    SciTech Connect

    Gandhi, Prafull S.; Page, Michael J.; Chen, Zhiwei; Bush-Pelc, Leslie; Di Cera, Enrico

    2009-09-15

    The thrombin mutant W215A/E217A (WE) is a potent anticoagulant both in vitro and in vivo. Previous x-ray structural studies have shown that WE assumes a partially collapsed conformation that is similar to the inactive E* form, which explains its drastically reduced activity toward substrate. Whether this collapsed conformation is genuine, rather than the result of crystal packing or the mutation introduced in the critical 215-217 {beta}-strand, and whether binding of thrombomodulin to exosite I can allosterically shift the E* form to the active E form to restore activity toward protein C are issues of considerable mechanistic importance to improve the design of an anticoagulant thrombin mutant for therapeutic applications. Here we present four crystal structures of WE in the human and murine forms that confirm the collapsed conformation reported previously under different experimental conditions and crystal packing. We also present structures of human and murine WE bound to exosite I with a fragment of the platelet receptor PAR1, which is unable to shift WE to the E form. These structural findings, along with kinetic and calorimetry data, indicate that WE is strongly stabilized in the E* form and explain why binding of ligands to exosite I has only a modest effect on the E*-E equilibrium for this mutant. The E* {yields} E transition requires the combined binding of thrombomodulin and protein C and restores activity of the mutant WE in the anticoagulant pathway.

  6. Investigation of ancient Harappan faience through LA-ICP-AES and SR-μ CT

    NASA Astrophysics Data System (ADS)

    Gu, Z.; Kenoyer, J. M.; Yang, Y.

    2016-04-01

    Faience (glazed quartz) production is one of the complex craft techniques used by artisans to create high-status goods for elite consumers during the Harappan Phase, 2600-1900 BC. In this study, some faience objects selected from Harappa site, Pakistan were analyzed by LA-ICP-AES and SR-μ CT. The results suggested that these faience objects can be divided into two groups by using different flux: sajji-khar (a kind of plant ash) and mixed alkali flux; copper and iron were used as coloring elements in the blue and red faience; the forming technology of two groups of faience was similar:these beads were firstly formed on an organic cylinder and then glazed by using the efflorescence technique according to replica experiments and the structural information revealed by SR-μ CT slices. Up to our knowledge, the results firstly and scientifically confirm that the production of the Harappan faience beads adopts the efflorescence glazing method. The research has increased the understanding about production technology of ancient Indus faience.

  7. Investigation of ancient Harappan faience through LA-ICP-AES and SR-μ CT

    NASA Astrophysics Data System (ADS)

    Gu, Z.; Kenoyer, J. M.; Yang, Y.

    2016-04-01

    Faience (glazed quartz) production is one of the complex craft techniques used by artisans to create high-status goods for elite consumers during the Harappan Phase, 2600–1900 BC. In this study, some faience objects selected from Harappa site, Pakistan were analyzed by LA-ICP-AES and SR-μ CT. The results suggested that these faience objects can be divided into two groups by using different flux: sajji-khar (a kind of plant ash) and mixed alkali flux; copper and iron were used as coloring elements in the blue and red faience; the forming technology of two groups of faience was similar:these beads were firstly formed on an organic cylinder and then glazed by using the efflorescence technique according to replica experiments and the structural information revealed by SR-μ CT slices. Up to our knowledge, the results firstly and scientifically confirm that the production of the Harappan faience beads adopts the efflorescence glazing method. The research has increased the understanding about production technology of ancient Indus faience.

  8. A global model of the neutral thermosphere in magnetic coordinates based on AE-C data

    NASA Technical Reports Server (NTRS)

    Stehle, C. G.; Nisbet, J. S.; Bleuler, E.

    1983-01-01

    Molecular nitrogen, atomic oxygen, and helium densities obtained from the AE-C satellite are analyzed in magnetic latitude and magnetic local time coordinates and compared to OGO 6 data for various seasons and magnetic activity levels. A depletion region for atomic oxygen and helium with respect to molecular nitrogen at high magnetic latitudes in the postmidnight magnetic local time sector persists under both high and low solar activity conditions. A global model in magnetic coordinates, patterned after the mass spectrometer and incoherent scatter (MSIS) model, is developed for molecular nitrogen, atomic oxygen, and helium. It is shown to represent the data well, without any residual UT dependence, and with an accuracy comparable to that provided by the more complex MSIS model with longitude terms The advantage of using magnetic coordinates is that they are more directly related to the major energy inputs and momentum sources in the polar regions than are geographic coordinates and are more convenient to use in studies of high latitude energy deposition processes. This is important for comparison with theoretical models where the number of coordinates is limited.

  9. Features of the matter flows in the peculiar cataclysmic variable AE Aquarii

    NASA Astrophysics Data System (ADS)

    Isakova, P. B.; Ikhsanov, N. R.; Zhilkin, A. G.; Bisikalo, D. V.; Beskrovnaya, N. G.

    2016-05-01

    The structure ofmatter flows in close binary systems in which one of the components is a rapidly rotating magnetic white dwarf is studied. Themain example considered is the AEAquarii system; the period of the white dwarf's rotation is about a factor of 1000 shorter than the orbital period, and the magnetic field on the white-dwarf surface is of order 50MG. The matter flows in this system were analyzed via numerical solution of a systemofmagnetohydrodynamical equatons. These computations show that the white dwarf's magnetic field does not significantly influence the velocity field of the matter in its Roche lobe in the case of a laminar flow regime, so that the field does not hinder the formation of a transient disk (ring) surrounding the magnetosphere. However, the efficiency of the energy and angular-momentum exchange between the white dwarf and the surrounding matter increases considerably with the development of turbulent motions in the matter, accelerating the matter at the magnetosphere boundary and leading to a high escape rate from the system. The time scales for the system's transition between the laminar and turbulent modes are close to those for the transition of AE Aquarii between its quiet and active phases.

  10. Reflections of AE Waves in Finite Plates: Finite Element Modeling and Experimental Measurements

    NASA Technical Reports Server (NTRS)

    Prosser, W. H.; Hamstad, M. A.; Gary, J.; OGallagher, A.

    1999-01-01

    The capability of a three-dimensional dynamic finite element method for predicting far-field acoustic emission signals in thin plates of finite lateral extent, including their reflections from the plate edges, was investigated. A lead break (Hsu-Neilsen) source to simulate AE was modeled and used in the experimental measurements. For the thin plate studied, the signals were primarily composed of the lowest order symmetric (S0) and antisymmetric (A0) Lamb modes. Experimental waveforms were detected with an absolutely calibrated, wideband, conical element transducer. The conditions of lead fractures both on the surface of the plate as well as on the edge of the plate were investigated. Surface lead breaks preferentially generate the A0 mode while edge lead breaks generate the S0 mode. Reflections of developed plate waves from both normal and oblique incidence angles were evaluated. Particularly interesting for the case of the lead break on the plate edge were S0 waves produced by the interaction of a Rayleigh wave with the plate corner and by a bulk shear wave mode converting at the side edge. The Rayleigh wave, in this case, propagated along the specimen edge. For all cases considered, the experimental measurements were in good agreement with the predictions of the finite element model.

  11. New strategies for SHM based on a multichannel wireless AE node

    NASA Astrophysics Data System (ADS)

    Godinez-Azcuaga, Valery; Ley, Obdulia

    2014-03-01

    This paper discusses the development of an Acoustic Emission (AE) wireless node and its application for SHM (Structural Health Monitoring). The instrument development was planned for applications monitoring steel and concrete bridges components. The final product, now commercially available, is a sensor node which includes multiple sensing elements, on board signal processing and analysis capabilities, signal conditioning electronics, power management circuits, wireless data transmission element and energy harvesting unit. The sensing elements are capable of functioning in both passive and active modes, while the multiple parametric inputs are available for connecting various sensor types to measure external characteristics affecting the performance of the structure under monitoring. The output of all these sensors are combined and analyzed at the node in order to minimize the data transmission rate, which consumes significant amount of power. Power management circuits are used to reduce the data collection intervals through selective data acquisition strategies and minimize the sensor node power consumption. This instrument, known as the 1284, is an excellent platform to deploy SHM in the original bridge applications, but initial prototypes has shown significant potential in monitoring composite wind turbine blades and composites mockups of Unmanned Autonomous Vehicles (UAV) components; currently we are working to extend the use of this system to fields such as coal flow, power transformer, and off-shore platform monitoring.

  12. The Mg 2 lines as diagnostic of PMS nature in Herbig Ae/Be stars

    NASA Technical Reports Server (NTRS)

    1994-01-01

    The main objective of this program was to observe some newly discovered and previously unobserved Herbig Ae/Be (HAeBe) stars with IUE. A previous archival study suggested that there was a full range of profiles in the Mg II lines for these objects; ranging from the double peak emission to the narrow absorption lines. It has been found that by studying the IUE data of main sequence B and classical Be stars that the P Cygni profiles in the Mg II lines in HAeBe stars are truly unique and are the signature of accelerating winds in their extended circumstellar material. The arguement, for the purposes of this proposal, that the structure of the Mg II lines was a superior diagnostic of the dynamical activity and ultimately the PMS nature of these objects. This program was a follow up study of several interesting intermediate-mass stars with the goal of classifying these objects based on the shape of their MG II lines. A list of publications resulting from this research is included.

  13. Adenovirus E1A/E1B Transformed Amniotic Fluid Cells Support Human Cytomegalovirus Replication

    PubMed Central

    Krömmelbein, Natascha; Wiebusch, Lüder; Schiedner, Gudrun; Büscher, Nicole; Sauer, Caroline; Florin, Luise; Sehn, Elisabeth; Wolfrum, Uwe; Plachter, Bodo

    2016-01-01

    The human cytomegalovirus (HCMV) replicates to high titers in primary human fibroblast cell cultures. A variety of primary human cells and some tumor-derived cell lines do also support permissive HCMV replication, yet at low levels. Cell lines established by transfection of the transforming functions of adenoviruses have been notoriously resistant to HCMV replication and progeny production. Here, we provide first-time evidence that a permanent cell line immortalized by adenovirus type 5 E1A and E1B (CAP) is supporting the full HCMV replication cycle and is releasing infectious progeny. The CAP cell line had previously been established from amniotic fluid cells which were likely derived from membranes of the developing fetus. These cells can be grown under serum-free conditions. HCMV efficiently penetrated CAP cells, expressed its immediate-early proteins and dispersed restrictive PML-bodies. Viral DNA replication was initiated and viral progeny became detectable by electron microscopy in CAP cells. Furthermore, infectious virus was released from CAP cells, yet to lower levels compared to fibroblasts. Subviral dense bodies were also secreted from CAP cells. The results show that E1A/E1B expression in transformed cells is not generally repressive to HCMV replication and that CAP cells may be a good substrate for dense body based vaccine production. PMID:26848680

  14. A Light Curve And Period Analysis Of AE Ursae Majoris, CY Aquarii, And DY Pegasi

    NASA Astrophysics Data System (ADS)

    Joner, Michael D.; Iverson, E. P.; Jolley, J. W.; Joner, L. A.; Swenson, C. A.

    2007-12-01

    We present a light curve analysis of three high amplitude delta Scuti stars (HADs). Data for this presentation were all secured during spring and fall of 2007. Most of the observations were obtained using the facilities of the Brigham Young University West Mountain Observatory. The variable stars we observed in this investigation include AE Ursae Majoris, CY Aquarii, and DY Pegasi. We present evidence for small period changes as well as an analysis of the light curve components for each of the variables. We compare the results obtained in the present investigation with prior studies of these same targets. This investigation is part of an initiative to provide a mentored learning environment at the West Mountain Observatory and to promote a variety of undergraduate research experiences. Tools developed in this investigation include the data reduction procedures that enable us to process the several thousand CCD frames that are secured each night as raw observations. We thank the Department of Physics and Astronomy and the College of Physical and Mathematical Sciences at Brigham Young University for the continued support of mentored undergraduate research.

  15. [Study on trace elements of lake sediments by ICP-AES and XRF core scanning].

    PubMed

    Cheng, Ai-Ying; Yu, Jun-Qing; Gao, Chun-Liang; Zhang, Li-Sha; He, Xian-Hu

    2013-07-01

    It is the first time to study sediment of Toson lake in Qaidam Basin. Trace elements including Cd, Cr, Cu, Zn and Pb in lake sediment were measured by ICP-AES method, studied and optimized from different resolution methods respectively, and finally determined a optimum pretreatment system for sediment of Toson lake, namely, HCl-HNO3-HF-HClO4-H2O2 system in the proportions of 5 : 5 : 5 : 1 : 1 was determined. At the same time, the data measured by XRF core scanning were compared, the use of moisture content correction method was analyzed, and the influence of the moisture content on the scanning method was discussed. The results showed that, compared to the background value, the contents of Cd and Zn were a little higher, the content of Cr, Cu and Pb was within the background value limits. XRF core scanning was controlled by sediment elements as well as water content in sediment to some extent. The results by the two methods showed a significant positive correlation, with the correlation coefficient up to 0.673-0.925, and they have a great comparability.

  16. iPAS: AES Flight System Technology Maturation for Human Spaceflight

    NASA Technical Reports Server (NTRS)

    Othon, William L.

    2014-01-01

    In order to realize the vision of expanding human presence in space, NASA will develop new technologies that can enable future crewed spacecraft to go far beyond Earth orbit. These technologies must be matured to the point that future project managers can accept the risk of incorporating them safely and effectively within integrated spacecraft systems, to satisfy very challenging mission requirements. The technologies must also be applied and managed within an operational context that includes both on-board crew and mission support on Earth. The Advanced Exploration Systems (AES) Program is one part of the NASA strategy to identify and develop key capabilities for human spaceflight, and mature them for future use. To support this initiative, the Integrated Power Avionics and Software (iPAS) environment has been developed that allows engineers, crew, and flight operators to mature promising technologies into applicable capabilities, and to assess the value of these capabilities within a space mission context. This paper describes the development of the integration environment to support technology maturation and risk reduction, and offers examples of technology and mission demonstrations executed to date.

  17. PIXE and ICP-AES analysis of early glass unearthed from Xinjiang (China)

    NASA Astrophysics Data System (ADS)

    Zhang, B.; Cheng, H. S.; Ma, B.; Li, Q. H.; Zhang, P.; Gan, F. X.; Yang, F. J.

    2005-10-01

    Early glasses (about 1066 BC-220 AD) unearthed from Xinjiang of China were chemically characterized by using PIXE and ICP-AES. It was found that these glasses were basically attributed to PbO-BaO-SiO2 system, K2O-SiO2 system, Na2O-CaO-SiO2 system and Na2O-CaO-PbO-SiO2 system. The results from the cluster analysis showed that some glasses had basically similar recipe and technology. The PbO-BaO-SiO2 glass and the K2O-SiO2 glass were thought to come from the central area and the south of ancient China, respectively. The part of the Na2O-CaO-SiO2 glass (including the Na2O-CaO-PbO-SiO2 glass) might be imported from Mesopotamia, while the other part might be locally produced.

  18. Estimation of trace impurities in reactor-grade uranium using ICP-AES.

    PubMed

    Malhotra, R K; Satyanarayana, K

    1999-10-01

    Estimation of impurities in reactor grade uranium is important from the point of view of neutron economy. For chemical separation, ion exchange and solvent extraction techniques have been employed although the latter is generally preferred. Amongst various extractants TBP (tri-n-butyl phosphate), TBP-TOPO (tri-n-octyl phosphine oxide), or TOPO only (in CCl(4), xylene, dodecane) is most often used. New reagents like Cyanex-923 (mixture of 4 tri-alkyl phosphine oxides)/TEHP (tri-ethylhexyl phosphoric acid) are also being used. This communication reports chemical separation of uranium by precipitation using 1,2-diaminocyclohexane NNN'N'-tetra acetic acid (CyDTA)/ammonium hydroxide in presence of 1,10-phenanthroline and estimation of impurities in the filtrate by ICP-AES. Quantitative separation of U, a high spectral interferent in plasma and recovery of impurities have been achieved. Recovery of Cd has been improved by using 1,10-phenanthroline. The method is accurate and precise, offering a relative standard deviation ranging from less than 4% (3.8% for Eu at the 10mug g(-1) level) to 12.9% (for Ce at the 2.5 mug g(-1) level) for all the elements studied.

  19. Linear spectropolarimetry across the optical spectrum of Herbig Ae/Be stars

    NASA Astrophysics Data System (ADS)

    Ababakr, K. M.; Oudmaijer, R. D.; Vink, J. S.

    2016-09-01

    We present the results of spectropolarimetric observations of 12 Herbig Ae/Be objects. Our data have the largest spectropolarimetric wavelength coverage, 4560-9480 Å, published to date. A change in linear polarization across the H α line, is detected in all objects. Such a line effect reveals the fact that stellar photons are scattered off free electrons that are not distributed in a spherically symmetric volume, suggesting the presence of small discs around these accreting objects. Thanks to the large wavelength coverage, we can report that H α is the spectral line in the optical wavelength range that is most sensitive to revealing deviations from spherical symmetry, and the one most likely to show a line effect across the polarization in such cases. Few other spectral lines display changes in polarization across the line. In addition, H α is the only line which shows an effect across its absorption component in some sources. We present a scenario explaining this finding and demonstrate that the detection of the line effect strongly relies on the number of photons scattered into our line of sight. We highlight the special case of R Mon, which is the only object in our sample to show many lines with a polarization effect, which is much stronger than in all other objects. Given that the object and its nebulosity is spatially resolved, we argue that this is due to scattering of the stellar and emission spectrum off circumstellar dust.

  20. A Study of Ro-vibrational OH Emission from Herbig Ae/Be Stars

    NASA Astrophysics Data System (ADS)

    Brittain, Sean D.; Najita, Joan R.; Carr, John S.; Ádámkovics, Máté; Reynolds, Nickalas

    2016-10-01

    We present a study of ro-vibrational OH and CO emission from 21 disks around Herbig Ae/Be stars. We find that the OH and CO luminosities are proportional over a wide range of stellar ultraviolet luminosities. The OH and CO line profiles are also similar, indicating that they arise from roughly the same radial region of the disk. The CO and OH emission are both correlated with the far-ultraviolet luminosity of the stars, while the polycyclic aromatic hydrocarbon (PAH) luminosity is correlated with the longer wavelength ultraviolet luminosity of the stars. Although disk flaring affects the PAH luminosity, it is not a factor in the luminosity of the OH and CO emission. These properties are consistent with models of UV-irradiated disk atmospheres. We also find that the transition disks in our sample, which have large optically thin inner regions, have lower OH and CO luminosities than non-transition disk sources with similar ultraviolet luminosities. This result, while tentative given the small sample size, is consistent with the interpretation that transition disks lack a gaseous disk close to the star.

  1. H2 emission from disks around Herbig Ae and T Tauri stars

    NASA Astrophysics Data System (ADS)

    Thi, W. F.; van Dishoeck, E. F.; Blake, G. A.; van Zadelhoff, G. J.; Hogerheijde, M. R.; Mannings, V.; Sargent, A. I.; Becklin, E. E.; Horn, J.; Zuckerman, B.; Koerner, D.; Mundy, L. G.; Waters, L. B. F. M.; Wesselius, P. R.; van den Ancker, M. E.; Natta, A.; Waelkens, C.; Malfait, K.

    1999-03-01

    We present the initial results of a deep ISO-SWS survey for the low J pure rotational emission lines of H2 toward a number of Herbig Ae and T Tauri stars. The objects are selected to be as isolated as possible from molecular clouds, with a spectral energy distribution characteristic of a circumstellar disk. For most of them the presence of a disk has been established directly by millimeter interferometry. The S(1) line is detected in most sources with a peak flux of 0.3-1 Jy. The S(0) line is definitely seen in 2 objects: GG Tau. The observations suggest the presence of ``warm'' gas at Tkin~ 100 K with a mass of a few % of the total gas + dust mass, derived assuming a gas-to-dust ratio of 100:1. The S(1) peak flux does not show a strong correlation with spectral type of the central star or continuum flux at 1.3 millimeter. Possible origins for the warm gas seen in H2 are discussed, and comparisons with model calculations are made.

  2. Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat.

    PubMed

    Cheuk, Arnaud; Houde, Mario

    2016-04-01

    The C1-2i wheat Q-type C2H2 zinc finger protein (ZFP) transcription factor subclass has been reported to play important roles in plant stress responses. This subclass of ZFPs has not been studied in hexaploid wheat (Triticum aestivum) and we aimed to identify all members of this subclass and evaluate their responses to different abiotic stresses causing oxidative stress. Exploiting the recently published wheat draft genome sequence, we identified 53 members (including homoeologs from A, B and D genomes) of the C1-2i wheat Q-type C2H2 ZFPs (TaZFPs) representing 21 genes. Evolution analysis revealed that 9 TaZFPs members are directly inherited from the parents Triticum urartu and Aegilops tauschii, while 15 diverged through neoploidization events. This TaZFP subclass is responsive to the oxidative stress generator H2O2 and to high light, drought stress and flooding. Most TaZFPs are responsive to H2O2 (37/53), high light (44/53), flooding (31/53) or drought (37/53); 32 TaZFPs were up-regulated by at least 3 stresses and 16 were responsive to all stresses tested. A large number of these TaZFPs were physically mapped on different wheat draft genome sequences with known markers useful for QTL mapping. Our results show that the C1-2i subclass of TaZFPs is associated with responses to different abiotic stresses and that most TaZFPs (30/53 or 57 %) are located on group 5 chromosomes known to be involved in environment adaptation. Detailed characterization of these novel wheat TaZFPs and their association to QTL or eQTL may help to design wheat cultivars with improved tolerance to abiotic stress.

  3. Lateral genomics.

    PubMed

    Doolittle, W F

    1999-12-01

    More than 20 complete prokaryotic genome sequences are now publicly available, each by itself an unparalleled resource for understanding organismal biology. Collectively, these data are even more powerful: they could force a dramatic reworking of the framework in which we understand biological evolution. It is possible that a single universal phylogenetic tree is not the best way to depict relationships between all living and extinct species. Instead a web- or net-like pattern, reflecting the importance of horizontal or lateral gene transfer between lineages of organisms, might provide a more appropriate visual metaphor. Here, I ask whether this way of thinking is really justified, and explore its implications.

  4. Observations of Herbig Ae/Be Stars with Herschel/PACS: The Atomic and Molecular Contents of Their Protoplanetary Discs

    NASA Technical Reports Server (NTRS)

    Meeus, G.; Montesinos, B.; Mendigutia, I.; Kamp, I.; Thi, W. F.; Eiroa, C.; Grady, C. A.; Mathews, G.; Sandell, G.; Martin-Zaidi, C.; Brittain, S.; Dent, W. R. F.; Howard, C.; Menard, F.; Pinte, C.; Roberge, A.; Vandenbussche, B.; Williams, J. P.

    2012-01-01

    We observed a sample of 20 representative Herbig Ae/Be stars and 5 A-type debris discs with PACS onboard Herschel, as part of the GAS in Protoplanetary Systems (GASPS) project. The observations were done in spectroscopic mode, and cover the far-infrared lines of [OI], [CII], CO, CH+, H20, and OH. We have a [OI]63 micro/ detection rate of 100% for the Herbig Ae/Be and 0% for the debris discs. The [OI] 145 micron line is only detected in 25% and CO J = 18-17 in 45% (and fewer cases for higher J transitions) of the Herbig Ae/Be stars, while for [CII] 157 micron, we often find spatially variable background contamination. We show the first detection of water in a Herbig Ae disc, HD 163296, which has a settled disc. Hydroxyl is detected as well in this disc. First seen in HD 100546, CH+ emission is now detected for the second time in a Herbig Ae star, HD 97048. We report fluxes for each line and use the observations as line diagnostics of the gas properties. Furthermore, we look for correlations between the strength of the emission lines and either the stellar or disc parameters, such as stellar luminosity, ultraviolet and X-ray flux. accretion rate, polycyclic aromatic hydrocarbon (PAH) band strength, and flaring. We find that the stellar ultraviolet flux is the dominant excitation mechanism of [OI] 63 micron, with the highest line fluxes being found in objects with a large amount of flaring and among the largest PAH strengths. Neither the amount of accretion nor the X-ray luminosity has an influence on the line strength. We find correlations between the line flux of [OI]63 micron and [OI] 145 micron, CO J = IS-17 and [OI] 6300 A, and between the continuum flux at 63 micron and at 1.3 mm, while we find weak correlations between the line flux. of [OI] 63 micron and the PAH luminosity, the line flux of CO J = 3-2, the continuum flux at 63 pm, the stellar effective temperature, and the Br-gamma luminosity. Finally, we use a combination of the [OI] 63 micron and C(12)O J

  5. Genomes on ice.

    PubMed

    Parkhill, Julian

    2016-03-01

    This month's Genome Watch discusses the analysis of a Helicobacter pylori genome from the preserved Copper-Age mummy known as the Iceman and how ancient genomes shed light on the history of bacterial pathogens. PMID:26853114

  6. Genomes on ice.

    PubMed

    Parkhill, Julian

    2016-03-01

    This month's Genome Watch discusses the analysis of a Helicobacter pylori genome from the preserved Copper-Age mummy known as the Iceman and how ancient genomes shed light on the history of bacterial pathogens.

  7. Whole Genome Sequencing

    MedlinePlus

    ... you want to learn. Search form Search Whole Genome Sequencing You are here Home Testing & Services Testing ... the full story, click here . What is whole genome sequencing? Whole genome sequencing is the mapping out ...

  8. Comparative Analysis of Continuous Acoustic Emission (AE) Data, Acquired from 12 and 16 Bit Streaming Systems during Rock Deformation Experiments

    NASA Astrophysics Data System (ADS)

    Flynn, J.; Goodfellow, S. D.; Nasseri, M. H.; Reyes-Montes, J. M.; Young, R.

    2013-12-01

    A comparative analysis of continuous acoustic emission (AE) data acquired during a triaxial compression test, using a 12-bit and a 16-bit acquisition system, is presented. A cylindrical sample (diameter 50.1 mm and length 125 mm) of Berea sandstone was triaxally deformed at a confining pressure of 15 MPa and a strain rate of 1.6E-06 s-1. The sample was loaded differentially until failure occurred at approximately σ1 = 160 MPa. AE activity was monitored for the duration of the experiment by an array of 8 broadband piezoelectric transducers coupled to the rock sample. Raw signals were amplified by 40 dB using pre-amplifiers equipped with filter modules with a frequency passband of 100 kHz to 1 MHz. The amplifiers had a split output enabling the measured signal to be fed into a 12-bit and a 16-bit acquisition system. AE waveforms were continuously recorded at 10 MS/s on 8 data acquisition channels per system. Approximately 4,500 events were harvested and source located from the continuous data for each system. P-wave arrivals were automatically picked and event locations calculated using the downhill Simplex method and a time-varying transverse isotropic velocity model based on periodical surveys across the sample. Events detected on the 12-bit and 16-bit systems were compared both in terms of their P-wave picks and their source locations. In the early stages of AE activity, there appeared to be little difference between P-wave picks and hypocenter locations from both data sets. As the experiment progressed into the post-peak stress regime, which was accompanied by an increase in AE rate and amplitude, fewer events could be harvested from the 12-bit data compared to the 16-bit data. This is linked to the observation of a higher signal-to-noise ratio on AE waveforms harvested from the 16-bit stream compared to those from the 12-bit stream, which results in an easier identification of P-wave onsets. Similarly a higher confidence in source location is expected. Analysis

  9. Investigation of interdiffusion and depth resolution in Cu/Ni multilayers by means of AES depth profiling

    NASA Astrophysics Data System (ADS)

    Yan, X. L.; Liu, Y.; Swart, H. C.; Wang, J. Y.; Terblans, J. J.

    2016-02-01

    The interdiffusion upon annealing Cu/Ni multilayers structures at 325 °C, 350 °C and 375 °C for 30 min were investigated by Auger electron spectroscopy (AES) depth profiling. The Cu/Ni multilayers structures were deposited on a SiO2 substrate by means of electron beam evaporation in a high vacuum. The measured AES depth profiles of the as-deposited and annealed samples were quantitatively fitted by the Mixing-Roughness-Information depth model assuming that the roughness parameter has linearly increased with the sputtered depth. The roughness values extracted from the depth profiling data fits agreed well with those measured by atomic force microscopy. The depth-dependent interdiffusion coefficients of the annealed samples and depth resolution upon depth profiling of the as-deposited sample were quantitatively evaluated accordingly.

  10. On the evolution of the nova-like variable AE Aquarii

    NASA Astrophysics Data System (ADS)

    Meintjes, P. J.

    2002-10-01

    A possible evolution for the enigmatic cataclysmic variable AE Aquarii is considered that may put into context the long orbital period and short white dwarf rotation period compared with other DQ Her systems. It has been shown that mass transfer could have been initiated when the secondary KIV-V star was already somewhat evolved when it established Roche lobe contact. In this initial phase the orbital period of the system was probably Porb,i~ 8.5 h, and the white dwarf rotation period P*,i > 1 h. Mass transfer in the form of diamagnetic gas blobs will result in an initial discless accretion process, resulting in an efficient drain of the binary orbital angular momentum. Since the initial mass ratio of the binary was probably qi~ 0.8, a high mass transfer rate and a slow expansion of the Roche lobe of the secondary star followed, accompanied by a fast expanding secondary following the mass loss. This could have resulted in the KIV-V secondary flooding its Roche surface, causing a run-away mass transfer of that lasted for approximately , during which time the binary expanded to an orbital period of approximately Porb~ 11 h. During this phase the mass accretion rate on to the surface of the white dwarf most probably exceeded the critical value for stable nuclear burning , which could have resulted in AE Aqr turning into an ultrasoft X-ray source. The high mass transfer terminated when a critical mass ratio of qcrit= 0.73 was reached. Disc torques spun-up the white dwarf to a period close to 33 s within the time-scale before the high mass transfer shut down when qcrit was reached. The decrease in the mass loss of the secondary allowed it to re-establish hydrostatic equilibrium on the dynamical time-scale (fraction of a day). From this point when qcrit is reached the mass transfer and binary evolution proceed at a slower rate since mass transfer from the secondary star is driven by magnetic braking of the secondary on a time-scale , which is the same as the thermal time

  11. Analysis of valence XPS and AES of C, N, O, and F-containing substances by DFT calculations using the model molecules

    NASA Astrophysics Data System (ADS)

    Endo, Kazunaka; Hyodo, Kenji; Takaoka, Kazuchiyo; Ida, Tomonori; Shimada, Shingo; Takagi, Yusuke; Kurmaev, Ernst Z.

    2015-05-01

    Experimental valence X-ray photoelectron spectra (VXPS) and Auger electron spectra (AES) of (Li, C, N, O, F) elements of four solid substances [graphite, GaN, SiO2, LiF] are analyzed by density-functional theory calculations using the model molecules of the unit cell. For the calculations, we use deMon density functional theory (DFT) program to estimate VXPS, core-electron binding energies, and (Li, C, N, O, F)-KVV AES of the solid substances. In the AES simulations, we evaluate theoretical kinetic energies of the AES with our modified calculation method. The modified kinetic energies correspond to two final-state holes at the ground state and at the transition-state in DFT calculations, respectively. Experimental KVV AES of the (Li, C, N, O) atoms in the substances agree considerably well to simulation of AES obtained with the maximum kinetic energies of the atoms, while, the experimental F KVV AES of LiF is almost in accordance with the spectra from the transition-state kinetic energy calculations.

  12. Photometric and Polarimetric Activity of the Herbig Ae Star VX Cas

    NASA Astrophysics Data System (ADS)

    Shakhovskoi, D. N.; Rostopchina, A. N.; Grinin, V. P.; Minikulov, N. Kh.

    2003-04-01

    We present the results of our simultaneous photometric and polarimetric observations of the Herbig Ae/Be star VX Cas acquired in 1987 2001. The star belongs to the UX Ori subtype of young variable stars and exhibits a rather low level of photometric activity: only six Algol-like minima with amplitudes ΔV>1m were recorded in 15 years of observations. Two of these minima, in 1998 and 2001, were the deepest in the history of the star’s photometric studies, with V amplitudes of about 2m. In each case, the dimming was accompanied by an increase in the linear polarization in agreement with the law expected for variable circumstellar extinction. The highest V polarization was about 5%. Observations of VX Cas in the deep minima revealed a turnover of the color tracks, typical of stars of this type and due to an increased contribution from radiation scattered in the circumstellar disk. We separated the observed polarization of VX Cas into interstellar (P is) and intrinsic (P in) components. Their position angles differ by approximately 60°, with P is dominating in the bright state and P in dominating during the deep minima. The competition of these two polarization components leads to changes in both the degree and position angle of the polarization during the star’s brightness variations. Generally speaking, in terms of the behavior of the brightness, color indices, and linear polarization, VX Cas is similar to other UX Ori stars studied by us earlier. A number of episodes of photometric and polarimetric activity suggest that, in their motion along highly eccentric orbits, circumstellar gas and dust clouds can enter the close vicinity of the star (and be disrupted there).

  13. [Analysis of twenty trace elements in ling zhi by ICP-AES].

    PubMed

    He, Jin-zhe; Kui, Xiao-yun; Yang, Kai; Shao, Pin; Sun, Pei-long

    2009-05-01

    Twenty trace elements, Al, As, Ca, Cd, Co, Cr, Cu, Fe, Ge, Hg, K, Mg, Mn, Na, Ni, P, Pb, S, Se and Zn were determined by ICP--AES with wet digestion from two kinds of different ling zhi fruitbody materials (Zhongzhi and Xianyuan), Ling Zhi root, ling zhi mixture, unbroken and broken ling zhi spore powder. The common feature about the element content showed that there were rich trace elements in different Ling Zhi materials, and the concentrations of K, Ca, Mg, Fe, Zn, P and S in all kinds of ling zhi samples were relatively high. Besides, there were trace elements, Cu, Co, Grand Ni, and potentially physiologically toxic elements, Al, As, Hg, Pb and Cd, in all samples. Elements Se and Ge with anticancer efficacy were not found in ling zhi samples. The concentrations of heavy metal elements were lower in spore powders than in other ling zhi samples. Trace element contents in the broken and unbroken spore powders showed minor difference, The concentrations of Fe and Se in ling zhi mixtures were obviously higher than in other kinds of Ling Zhi samples, due to factitious addition of these elements to Ling Zhi mixture sample. There was some difference between two kinds of Ling Zhi fruitbody from deferent plant places, which may have some relations with the soil and environment. The concentrations of Ca, Cu and Zn in ling zhi root were higher than in other ling zhi materials. According to the analyses, these elements in ling zhi were helpful to improving cardiovascular function. PMID:19650502

  14. UV spectral variability in the Herbig Ae star HR 5999. 11: The accretion interpretation

    NASA Technical Reports Server (NTRS)

    Perez, M. R.; Grady, C. A.; The, P. S.

    1993-01-01

    We report recent IUE high- and low-dispersion observations with the IUE long wavelength camera (LWP) and short wavelength camera (SWP) of the Herbig Ae star HR 5999. We have found a dramatic change in the structure of the Mg II h and k lines (2795.5, 2802.7 A) along with some continuum flux excesses especially at the short end of the SWP camera. LWP high dispersion observations of HR 5999 obtained between 1979 and 1990, at times of comparatively low UV continuum fluxes, exhibit P Cygni type m profiles in the Mg II resonance doublet. In contrast, observations made from September 1990 through March 16-18, 1992, with high W continuum fluxes, present Mg II lines with reverse P Cygni profiles indicative of some active episodic accretion. Accreting gas can also be detected in the additional red wings of the various Fe II and Mn II absorption lines, with velocities up to +300-350 km/s (September 1990). By September 10, 1992 the Mg II profile had returned to the type III P Cygni profile similar to those from earlier spectra. The correlation between the presence of large column densities of accreting gas and the continuum light variations supports suggestions by several authors that HR 5999 is surrounded by an optically thick, viscously heated accretion disk. Detection of accreting gas in the line of sight to HR 5999 permits us to place constraints on our viewing geometry for this system. A discussion is included comparing the spectral and physical similarities between HR 5999 and the more evolved proto-planetary candidate system, beta Pictoris.

  15. ISO-LWS observations of Herbig Ae/Be stars. II. Molecular lines

    NASA Astrophysics Data System (ADS)

    Giannini, T.; Lorenzetti, D.; Tommasi, E.; Nisini, B.; Benedettini, M.; Pezzuto, S.; Strafella, F.; Barlow, M.; Clegg, P. E.; Cohen, M.; di Giorgio, A. M.; Liseau, R.; Molinari, S.; Palla, F.; Saraceno, P.; Smith, H. A.; Spinoglio, L.; White, G. J.

    1999-06-01

    We present the first ISO-LWS observations of the molecular FIR lines in 3 out of a sample of 11 Herbig Ae/Be stars (HAEBE), namely IRAS12496-7650, RCrA and LkHα 234. High-J rotational CO lines (from Jup = 14 to Jup = 19) have been observed in all the spectra, while two (at 79 mu m and 84 mu m) and three OH lines (at 71 mu m, 79 mu m and 84 mu m) were detected in LkHα 234 and RCrA respectively. For all sources the molecular emission has been consistently fitted with a Large Velocity Gradient (LVG) model and it results originated in a warm (T ga 200 K) and dense (nH_2 >~ 10(5) cm(-3) ) gas located in very compact regions having diameters of few hundreds of AU. These three sources are those with the highest density among the stars of the sample; this suggests that the molecular emission arises in regions showing density peaks. By comparing the observed cooling ratios with model predictions, we find that the FUV radiation from the central source (or from a more embedded companion) is the most likely responsible for the line excitation. At least for the sources where OH has been observed, the contribution of shocks to the line emission can be reasonably ruled out because of the absence in the spectra of any water vapour lines, in contrast with the predictions for molecular emission coming from warm shocked environments. Based on observations with ISO, an ESA project with instruments funded by ESA Member States and with the participation of ISAS and NASA}

  16. [Determination of Mineral Elements in Choerospondias Axillaris and Its Extractives by ICP-AES].

    PubMed

    Zhai, Yu-xin; Chen, Jun; Li, Ti; Liu, Ji-yan; Wang, Xie-yi; Cheng, Chao; Liu, Cheng-mei

    2015-04-01

    Nine elements in Choerospondias axillaris flesh, peels, aqueous extractives and gastric digesta were determined by the inductively coupled plasma atomic emission spectrometry (ICP-AES) in the present study. The results showed that the contents of Fe, Ca, Zn, Mn, Al, Mg, Cu, K and P in the flesh were 27.37, 269.88, 1.51, 2.45, 1.95, 195.30, 2.45, 2,970.11, and 133.94 µg · g(-1), respectively. They are lower than that in the peels, about 40.31%, 11.70%, 21.68%, 4.27%, 10.58%, 15.76%, 68.72%, 42.04%, and 22.59%, respectively. For microwave assistant extraction, the release rate of Mn was highest (81.68%), while Fe was lowest (4.42%) in the flesh. The release rate of Zn was the highest (79.00%), while that of A1 was the lowest (4.94%) in the peels. Except Fe, Cu and Zn, the release rates of the other elements in flesh were higher than those in the peels. After gastric digestion, the release rates of nine elements were 3.25%-87.51% in the flesh and 7.11%-50.69% in the peels. The release rates of minerals in the flesh were found to be higher than those in the peels except Fe and Cu. Microwave assistant extraction can more efficiently release Fe, Ca, Mn, Mg and K from the flesh than the gastric digestion do. While gastric digestion had a significant effect on the peels, the release rates of elements, except Zn, were higher than those in microwave assistant extraction. Therefore, the difference of distribution and release of mineral elements between peels and flesh of Choerospondias axillaris was understood, which will provide a positive guide for further study of bioavailability of minerals for human body.

  17. Investigating the Origin of Hot Gas Lines in Herbig Ae/Be Stars

    NASA Astrophysics Data System (ADS)

    Cauley, P. Wilson; Johns-Krull, Christopher M.

    2016-07-01

    We analyze high-resolution UV spectra of a small sample of Herbig Ae/Be stars (HAEBESs) in order to explore the origin of the T ˜ 105 K gas in these stars. The C iv λ λ1548, 1550 line luminosities are compared to nonsimultaneous accretion rate estimates for the objects showing C iv emission. We show that the correlation between L C iv and \\dot{M} previously established for classical T Tauri stars (CTTSs) seems to extend into the HAEBE mass regime, although the large spread in literature \\dot{M} and A V values makes the actual relationship highly uncertain. With the exception of DX Cha, we find no evidence for hot, optically thick winds in our HAEBE sample. All other objects showing clear doublet emission in C iv can be well described by a two-component (i.e., a single component for each doublet member) or four-component (i.e., two components for each doublet member) Gaussian emission line fit. The morphologies and peak-flux velocities of these lines suggest that they are formed in weak, optically thin stellar winds and not in an accretion flow, as is the case for the hot lines observed in CTTSs. The lack of strong outflow signatures and lack of evidence for line formation in accretion flows are consistent with the conclusion presented in our recent optical and He i λ10830 studies that the immediate circumstellar environments of HAEBESs, in general, are not scaled-up analogs of the immediate environments around CTTSs. The conclusions presented here for hot gas lines around HAEBESs should be verified with a larger sample of objects.

  18. [Application of a modified method of wavelet noise removing to noisy ICP-AES spectra].

    PubMed

    Ma, Xiao-guo; Zhang, Zhan-xia

    2003-06-01

    A new method for noise removal from signal by the wavelet transform was developed. Compared with analytical signal, noise has higher frequency and smaller amplitude. By the new wavelet filtering method, the high frequency components were first removed, and then the small ones in the remaining transformed vectors were discarded. The proposed approach was evaluated by the processing of simulated and experimental noisy ICP-AES spectra. Different amounts of noise were added to a Gaussian peak to obtain a series of noisy ICP spectra. The simulated noisy spectra with R (signal to noise ratio) = 6 and N (data number) = 51, and with R = 6 and N = 17 were used to illustrate the feasibility of the proposed method. The performances of noise removal by the wavelet smoothing, the wavelet denoising and the proposed technique were compared. It was found that using the new approach, the relative errors of peak height would be no more than 5% for spectra with normal sampling points and R > or = 2. Moreover, the baseline could be easily defined, which was helpful to the accurate measurement of peak height. Experimental spectra of Al and V at low concentrations were processed by the proposed method. Intense noises were efficiently removed and the spectra became smoother without underestimating the analytical signal. The distortion of V 303.310 nm line was substantially rectified. The linear correlation coefficients between the peak heights in the reconstructed spectra and the concentrations were found to be 0.9953 for Al and 0.9836 for V, respectively. PMID:12953539

  19. [Determination of nano-silver spatiotemporal distribution in cut gerbera flowers by ICP-AES].

    PubMed

    Lü, Pei-Tao; Huang, Xin-Min; Lu, Yi-Min; Liu, Ji-Ping; Zhang, Zhao-Qi; He, Sheng-Gen

    2011-08-01

    The spatiotemporal distribution of nano-silver in cut gerbera (Gerbera hybrida cv. Crossfire) flowers were determined by inductively coupled plasma-atomic emission spectrometry technique (ICP-AES). The relative standard deviations of this method were between 0.14% and 2.89%, and the recovery ratio obtained by standard addition method ranged from 93.33% to 106.67%. The method was proved to be simple, rapid, reliable and highly sensitive, which can meet the demands of actual sample analysis. The experimental results also showed that Ag could be found in the basal stem end, upper stem end and petal of the cut gerbera flowers treated in nano-silver solution of 5 mg x L(-1) for 24 h and thereafter placed in distilled water. However, the Ag content in basal stem ends was much higher than those in upper stem ends and petals. The results indicated that nano-silver particles could enter into the flower stems through the cuts of stem ends and then moved to different parts of the cut gerbera flowers, but most of them located in the basal stem ends during the vase period. The fact that Ag was centred in basal stem end implied that the positive preservation effects of nano-silver on cut gerbera flowers is related to its strong and sustainable antiseptic action in the stem ends of cut flowers. The above results provide a reliable method for the determination of nano-silver and theoretical basis for its futher research and application in the preservation of cut flowers.

  20. Experimental study of the effect of spacer grid on the flow structure in fuel assemblies of the AES 2006 reactor

    NASA Astrophysics Data System (ADS)

    Kashinskii, O. N.; Lobanov, P. D.; Pribaturin, N. A.; Kurdyumov, A. S.; Volkov, S. E.

    2013-01-01

    Results from an experimental study of the local hydrodynamic structure of liquid flow in a 37-cell model simulating a fuel assembly used in the AES-2006 reactor are presented. Special attention is paid to the effect of spacer grid on flow hydrodynamics. Data on variations of the local and integral values of the liquid axial velocity and friction stress on the fuel rod simulator's wall with distance from the grid are given.

  1. Ecological effects of an anionic C12-15 AE-3S alkylethoxysulfate surfactant in outdoor stream mesocosms.

    PubMed

    Lizotte, Richard E; Dorn, Philip B; Steinriede, R Wade; Wong, Diana C L; Rodgers, John H

    2002-12-01

    The ecological assessment of a C12-15 AE-3S linear alkylethoxysulfate (AES) anionic surfactant to invertebrates, fish, periphyton, and an aquatic macrophyte was conducted in a 30-d outdoor stream mesocosm study with five replicated concentrations and controls. Alkylethoxysulfate structural integrity and exposure concentrations were maintained during the 30-d treatment period, with average measured concentrations of 0.7, 1.27, 2.2, 4.31, and 10.18 mg/L. No effects were observed on the aquatic macrophyte Myriophyllum aquaticum at the highest concentration tested. A sevenfold increase in periphyton biomass at 10.18 mg/L was observed relative to controls primarily because of increases in density of the filamentous alga Mougeotia sp. Densities of the invertebrates Annelida (Stylaria), Amphipoda, Copepoda, Trichoptera (Hydropsychidae), Cladocera, and Diptera (Chironomidae) significantly decreased in streams treated with AES at 10.18 mg/L. Densities of drifting invertebrates were not observed to be affected at any concentration tested. Reproduction of Pimephales promelas significantly decreased at 1.27 mg/L and growth of juvenile Lepomis macrochirus was significantly affected at 4.31 mg/L. Multivariate cluster analysis and nonmetric multidimensional scaling ordination showed distinct structural effects on the invertebrate communities in the streams treated with AES at 10.18 mg/ L compared to the control and streams treated at < 10.18 mg/L through the 30-d treatment. Convergence of the communities treated at 10.18 mg/L toward control communities in the ordination suggests recovery in these communities after termination of surfactant treatment. The results from this study support an ecosystem value of > 2.0 mg/L, and indicate that the conservative Dutch risk assessment for AESs has at least a fivefold margin of safety.

  2. Mapping Copper and Lead Concentrations at Abandoned Mine Areas Using Element Analysis Data from ICP–AES and Portable XRF Instruments: A Comparative Study

    PubMed Central

    Lee, Hyeongyu; Choi, Yosoon; Suh, Jangwon; Lee, Seung-Ho

    2016-01-01

    Understanding spatial variation of potentially toxic trace elements (PTEs) in soil is necessary to identify the proper measures for preventing soil contamination at both operating and abandoned mining areas. Many studies have been conducted worldwide to explore the spatial variation of PTEs and to create soil contamination maps using geostatistical methods. However, they generally depend only on inductively coupled plasma atomic emission spectrometry (ICP–AES) analysis data, therefore such studies are limited by insufficient input data owing to the disadvantages of ICP–AES analysis such as its costly operation and lengthy period required for analysis. To overcome this limitation, this study used both ICP–AES and portable X-ray fluorescence (PXRF) analysis data, with relatively low accuracy, for mapping copper and lead concentrations at a section of the Busan abandoned mine in Korea and compared the prediction performances of four different approaches: the application of ordinary kriging to ICP–AES analysis data, PXRF analysis data, both ICP–AES and transformed PXRF analysis data by considering the correlation between the ICP–AES and PXRF analysis data, and co-kriging to both the ICP–AES (primary variable) and PXRF analysis data (secondary variable). Their results were compared using an independent validation data set. The results obtained in this case study showed that the application of ordinary kriging to both ICP–AES and transformed PXRF analysis data is the most accurate approach when considers the spatial distribution of copper and lead contaminants in the soil and the estimation errors at 11 sampling points for validation. Therefore, when generating soil contamination maps for an abandoned mine, it is beneficial to use the proposed approach that incorporates the advantageous aspects of both ICP–AES and PXRF analysis data. PMID:27043594

  3. Loss of the AE3 Cl−/HCO−3 exchanger in mice affects rate-dependent inotropy and stress-related AKT signaling in heart

    PubMed Central

    Prasad, Vikram; Lorenz, John N.; Lasko, Valerie M.; Nieman, Michelle L.; Al Moamen, Nabeel J.; Shull, Gary E.

    2013-01-01

    Cl−/HCO−3 exchangers are expressed abundantly in cardiac muscle, suggesting that HCO−3 extrusion serves an important function in heart. Mice lacking Anion Exchanger Isoform 3 (AE3), a major cardiac Cl−/HCO−3 exchanger, appear healthy, but loss of AE3 causes decompensation in a hypertrophic cardiomyopathy (HCM) model. Using intra-ventricular pressure analysis, in vivo pacing, and molecular studies we identified physiological and biochemical changes caused by loss of AE3 that may contribute to decompensation in HCM. AE3-null mice had normal cardiac contractility under basal conditions and after β-adrenergic stimulation, but pacing of hearts revealed that frequency-dependent inotropy was blunted, suggesting that AE3-mediated HCO−3 extrusion is required for a robust force-frequency response (FFR) during acute biomechanical stress in vivo. Modest changes in expression of proteins that affect Ca2+-handling were observed, but Ca2+-transient analysis of AE3-null myocytes showed normal twitch-amplitude and Ca2+-clearance. Phosphorylation and expression of several proteins implicated in HCM and FFR, including phospholamban (PLN), myosin binding protein C, and troponin I were not altered in hearts of paced AE3-null mice; however, phosphorylation of Akt, which plays a central role in mechanosensory signaling, was significantly higher in paced AE3-null hearts than in wild-type controls and phosphorylation of AMPK, which is affected by Akt and is involved in energy metabolism and some cases of HCM, was reduced. These data show loss of AE3 leads to impaired rate-dependent inotropy, appears to affect mechanical stress-responsive signaling, and reduces activation of AMPK, which may contribute to decompensation in heart failure. PMID:24427143

  4. MHC class II tetramer analyses in AE37-vaccinated prostate cancer patients reveal vaccine-specific polyfunctional and long-lasting CD4(+) T-cells.

    PubMed

    Anastasopoulou, Eleftheria A; Voutsas, Ioannis F; Papamichail, Michael; Baxevanis, Constantin N; Perez, Sonia A

    2016-07-01

    Realizing the basis for generating long-lasting clinical responses in cancer patients after therapeutic vaccinations provides the means to further ameliorate clinical efficacy. Peptide cancer vaccines stimulating CD4(+) T helper cells are often promising for inducing immunological memory and persistent CD8(+) cytotoxic T cell responses. Recent reports from our clinical trial with the AE37 vaccine, which is a HER2 hybrid polypeptide, documented its efficacy to induce CD4(+) T cell immunity, which was associated with clinical improvements preferentially among HLA-DRB1*11(+) prostate cancer patients. Here, we performed in-depth investigation of the CD4(+) T cell response against the AE37 vaccine. We used the DR11/AE37 tetramer in combination with multicolor flow cytometry to identify and characterize AE37-specific CD4(+) T cells regarding memory and Tregs phenotype in HLA-DRB1*11(+) vaccinated patients. To verify vaccine-specific immunological memory in vivo, we also assessed AE37-specific CD4(+) T cells in defined CD4(+) memory subsets by cell sorting. Finally, vaccine-induced AE37-specific CD4(+) T cells were assessed regarding their functional profile. AE37-specific memory CD4(+) T cells could be detected in peptide-stimulated cultures from prostate cancer patients following vaccination even 4 y post-vaccination. The vast majority of vaccine-induced AE37-specific CD4(+) T cells exhibited a multifunctional, mostly Th1 cytokine signature, with the potential of granzyme B production. In contrast, we found relatively low frequencies of Tregs among AE37-specific CD4(+) T cells. This is the first report on the identification of vaccine-induced HER2-specific multifunctional long-lasting CD4(+) T cells in vaccinated prostate cancer patients. PMID:27622033

  5. Mapping Copper and Lead Concentrations at Abandoned Mine Areas Using Element Analysis Data from ICP-AES and Portable XRF Instruments: A Comparative Study.

    PubMed

    Lee, Hyeongyu; Choi, Yosoon; Suh, Jangwon; Lee, Seung-Ho

    2016-03-30

    Understanding spatial variation of potentially toxic trace elements (PTEs) in soil is necessary to identify the proper measures for preventing soil contamination at both operating and abandoned mining areas. Many studies have been conducted worldwide to explore the spatial variation of PTEs and to create soil contamination maps using geostatistical methods. However, they generally depend only on inductively coupled plasma atomic emission spectrometry (ICP-AES) analysis data, therefore such studies are limited by insufficient input data owing to the disadvantages of ICP-AES analysis such as its costly operation and lengthy period required for analysis. To overcome this limitation, this study used both ICP-AES and portable X-ray fluorescence (PXRF) analysis data, with relatively low accuracy, for mapping copper and lead concentrations at a section of the Busan abandoned mine in Korea and compared the prediction performances of four different approaches: the application of ordinary kriging to ICP-AES analysis data, PXRF analysis data, both ICP-AES and transformed PXRF analysis data by considering the correlation between the ICP-AES and PXRF analysis data, and co-kriging to both the ICP-AES (primary variable) and PXRF analysis data (secondary variable). Their results were compared using an independent validation data set. The results obtained in this case study showed that the application of ordinary kriging to both ICP-AES and transformed PXRF analysis data is the most accurate approach when considers the spatial distribution of copper and lead contaminants in the soil and the estimation errors at 11 sampling points for validation. Therefore, when generating soil contamination maps for an abandoned mine, it is beneficial to use the proposed approach that incorporates the advantageous aspects of both ICP-AES and PXRF analysis data.

  6. MHC class II tetramer analyses in AE37-vaccinated prostate cancer patients reveal vaccine-specific polyfunctional and long-lasting CD4(+) T-cells.

    PubMed

    Anastasopoulou, Eleftheria A; Voutsas, Ioannis F; Papamichail, Michael; Baxevanis, Constantin N; Perez, Sonia A

    2016-07-01

    Realizing the basis for generating long-lasting clinical responses in cancer patients after therapeutic vaccinations provides the means to further ameliorate clinical efficacy. Peptide cancer vaccines stimulating CD4(+) T helper cells are often promising for inducing immunological memory and persistent CD8(+) cytotoxic T cell responses. Recent reports from our clinical trial with the AE37 vaccine, which is a HER2 hybrid polypeptide, documented its efficacy to induce CD4(+) T cell immunity, which was associated with clinical improvements preferentially among HLA-DRB1*11(+) prostate cancer patients. Here, we performed in-depth investigation of the CD4(+) T cell response against the AE37 vaccine. We used the DR11/AE37 tetramer in combination with multicolor flow cytometry to identify and characterize AE37-specific CD4(+) T cells regarding memory and Tregs phenotype in HLA-DRB1*11(+) vaccinated patients. To verify vaccine-specific immunological memory in vivo, we also assessed AE37-specific CD4(+) T cells in defined CD4(+) memory subsets by cell sorting. Finally, vaccine-induced AE37-specific CD4(+) T cells were assessed regarding their functional profile. AE37-specific memory CD4(+) T cells could be detected in peptide-stimulated cultures from prostate cancer patients following vaccination even 4 y post-vaccination. The vast majority of vaccine-induced AE37-specific CD4(+) T cells exhibited a multifunctional, mostly Th1 cytokine signature, with the potential of granzyme B production. In contrast, we found relatively low frequencies of Tregs among AE37-specific CD4(+) T cells. This is the first report on the identification of vaccine-induced HER2-specific multifunctional long-lasting CD4(+) T cells in vaccinated prostate cancer patients.

  7. Mapping Copper and Lead Concentrations at Abandoned Mine Areas Using Element Analysis Data from ICP-AES and Portable XRF Instruments: A Comparative Study.

    PubMed

    Lee, Hyeongyu; Choi, Yosoon; Suh, Jangwon; Lee, Seung-Ho

    2016-04-01

    Understanding spatial variation of potentially toxic trace elements (PTEs) in soil is necessary to identify the proper measures for preventing soil contamination at both operating and abandoned mining areas. Many studies have been conducted worldwide to explore the spatial variation of PTEs and to create soil contamination maps using geostatistical methods. However, they generally depend only on inductively coupled plasma atomic emission spectrometry (ICP-AES) analysis data, therefore such studies are limited by insufficient input data owing to the disadvantages of ICP-AES analysis such as its costly operation and lengthy period required for analysis. To overcome this limitation, this study used both ICP-AES and portable X-ray fluorescence (PXRF) analysis data, with relatively low accuracy, for mapping copper and lead concentrations at a section of the Busan abandoned mine in Korea and compared the prediction performances of four different approaches: the application of ordinary kriging to ICP-AES analysis data, PXRF analysis data, both ICP-AES and transformed PXRF analysis data by considering the correlation between the ICP-AES and PXRF analysis data, and co-kriging to both the ICP-AES (primary variable) and PXRF analysis data (secondary variable). Their results were compared using an independent validation data set. The results obtained in this case study showed that the application of ordinary kriging to both ICP-AES and transformed PXRF analysis data is the most accurate approach when considers the spatial distribution of copper and lead contaminants in the soil and the estimation errors at 11 sampling points for validation. Therefore, when generating soil contamination maps for an abandoned mine, it is beneficial to use the proposed approach that incorporates the advantageous aspects of both ICP-AES and PXRF analysis data. PMID:27043594

  8. Improvement of sensitivity of electrolyte cathode discharge atomic emission spectrometry (ELCAD-AES) for mercury using acetic acid medium.

    PubMed

    Shekhar, R

    2012-05-15

    A method has been developed to improve the sensitivity of the electrolyte cathode discharge atomic emission spectrometry (ELCAD-AES) for mercury determination. Effects of various low molecular weight organic solvents at different volume percentages as well as at different acid molarities on the mercury signal were investigated using ELCAD-AES. The addition of few percent of organic solvent, acetic acid produced significant enhancement in mercury signal. Acetic acid of 5% (v/v) with the 0.2M acidity has been found to give 500% enhancement for mercury signal in flow injection mode. Under the optimized parameters the repeatability, expressed as the percentage relative standard deviation of spectral peak area for mercury with 5% acetic acid was found to be 10% for acid blank solution and 5% for 20 ng/mL mercury standard based on multiple measurements with a multiple sample loading in flow injection mode. Limit of detection of this method was determined to be 2 ng/mL for inorganic mercury. The proposed method has been validated by determining mercury in certified reference materials, Tuna fish (IAEA-350) and Aquatic plant (BCR-060). Accuracy of the method for the mercury determination in the reference materials has been found to be between 3.5% and 5.9%. This study enhances the utility of ELCAD-AES for various types of biological and environmental materials to quantify total mercury at very low levels. PMID:22483872

  9. Improvement of sensitivity of electrolyte cathode discharge atomic emission spectrometry (ELCAD-AES) for mercury using acetic acid medium.

    PubMed

    Shekhar, R

    2012-05-15

    A method has been developed to improve the sensitivity of the electrolyte cathode discharge atomic emission spectrometry (ELCAD-AES) for mercury determination. Effects of various low molecular weight organic solvents at different volume percentages as well as at different acid molarities on the mercury signal were investigated using ELCAD-AES. The addition of few percent of organic solvent, acetic acid produced significant enhancement in mercury signal. Acetic acid of 5% (v/v) with the 0.2M acidity has been found to give 500% enhancement for mercury signal in flow injection mode. Under the optimized parameters the repeatability, expressed as the percentage relative standard deviation of spectral peak area for mercury with 5% acetic acid was found to be 10% for acid blank solution and 5% for 20 ng/mL mercury standard based on multiple measurements with a multiple sample loading in flow injection mode. Limit of detection of this method was determined to be 2 ng/mL for inorganic mercury. The proposed method has been validated by determining mercury in certified reference materials, Tuna fish (IAEA-350) and Aquatic plant (BCR-060). Accuracy of the method for the mercury determination in the reference materials has been found to be between 3.5% and 5.9%. This study enhances the utility of ELCAD-AES for various types of biological and environmental materials to quantify total mercury at very low levels.

  10. Application Of AE Technique On Properties Evaluation Of Anode-supported Ceria Electrolyte Thin Film-based SOFCs

    NASA Astrophysics Data System (ADS)

    Lin, H.; Ding, C.; Kumada, K.; Sato, K.; Tsutai, Y.; Wada, C.; Hashida, T.

    2008-02-01

    In this study, Ni-Gd0.1Ce0.9O1.95 (GDC) anode-supported ceria electrolyte film was prepared by a citrate sol-gel route. A simulated environment testing method which was combined with acoustic emission (AE) monitoring was developed to investigate the electrochemical performance and fracture process of a fuel cell Ni-GDC/Sm0.2Ce0.8O1.9 (20SDC)/La0.6Sr0.4Co0.2Fe0.8O3-δ (LSCF) based on this thin film with thickness of 500 nm. The damage testing method was applied o anode-supported thin creia electrolyte single cells. The results showed that the AE monitoring detected the fracture process at cell performance temperatures of 700-900 °C, which showed the delamination of LSCF cathode from the SDC electrolyte film, which presented a drastic decrease of electrical performance. It was demonstrated that the AE monitoring conducted in this study was useful to detect and analyze the fracture process of the single cell with the electrochemical measurement.

  11. Medium and large-scale variations of dynamo-induced electric fields from AE ion drift measurements

    NASA Technical Reports Server (NTRS)

    Coley, W. R.; Mcclure, J. P.

    1986-01-01

    Current models of the low latitude electric field are largely based on data from incoherent scatter radars. These observations are extended through the addition of the rather extensive high quality electric field measurements from the Ion Drift Meter (IDM) aboard the Atmosphere Explorer (AE) spacecraft. Some preliminary results obtained from the Unified Abstract files of satellite AE-E are presented. This satellite was active from the end of 1975 through June 1981 in various elliptical and circular orbits having an inclination near 20 deg. The resulting data can be examined for the variation of ion drift with latitude, longitude, season, solar cycle, altitude, and magnetic activity. The results presented deal primarily with latitudinal variations of the drift features. Diagrams of data are given and briefly interpreted. The preliminary results presented here indicate that IDM data from the AE and the more recent Dynamics Explorer B spacecraft should continue to disclose some interesting and previously unobserved dynamical features of the low latitude F region.

  12. Surface characterization of hydrogen charged and uncharged alpha-2 and gamma titanium aluminide alloys using AES and REELS

    NASA Technical Reports Server (NTRS)

    Shanabarger, M. R.

    1990-01-01

    The surfaces of selected uncharged and hydrogen charged alpha-2 and gamma titanium aluminide alloys with Nb additions were characterized by Auger electron (AES) and reflected electron energy loss (REELS) spectroscopy. The alloy surfaces were cleaned before analysis at room temperature by ion sputtering. The low energy (500 eV) ion sputtering process preferentially sputtered the surface concentration. The surface concentrations were determined by comparing AES data from the alloys with corresponding data from elemental references. No differences were observed in the Ti or Nb Auger spectra for the uncharged and hydrogen charged alloys, even though the alpha-2 alloy had 33.4 atomic percent dissolved hydrogen. Also, no differences were observed in the AES spectra when hydrogen was adsorbed from the gas phase. Bulk plasmon energy shifts were observed in all alloys. The energy shifts were induced either by dissolved hydrogen (alpha-2 alloy) or hydrogen adsorbed from the gas phase (alpha-2 and gamma alloys). The adsorption induced plasmon energy shifts were greatest for the gamma alloy and cp-Ti metal.

  13. Evaluation of Generation Mechanism of Vertical Cracks in Top Coat of TBCs During APS Deposition by Laser AE Method

    NASA Astrophysics Data System (ADS)

    Ito, K.; Kuriki, H.; Araki, H.; Kuroda, S.; Enoki, M.

    2015-06-01

    Vertical cracks can be generated in the top coat of thermal barrier coatings (TBCs) deposited by atmospheric plasma spraying (APS). Since they are known to improve the durability of TBCs such as in the case of dense vertically cracked TBC, clarification of the mechanism and the criteria of cracking are very important. In this study, generation of such vertical cracks was monitored during APS process by laser acoustic emission (AE) method, which is an in situ, non-contact, and non-destructive technique. Temperature was also monitored inside and on the surface of a specimen during APS process for estimation of the temperature field in the top coat. Results of the AE and temperature monitoring were combined to evaluate the relationship between cracking and thermal stress in the top coat. Most of the AE events due to the generation of vertical cracks were detected during rapid heating of the surface of the top coat by the heat flux from the torch. It showed that the vertical cracks were induced due to the tensile stress caused by the temperature difference in the top coat from the rapid heating. Furthermore, the estimated critical thermal stress for vertical cracking from the monitoring results was consistent with a previously reported strength of YSZ coating deposited by thermal spray.

  14. Ensembl genomes 2016: more genomes, more complexity

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the two resources provide a consistent...

  15. Ensembl Genomes 2016: more genomes, more complexity

    PubMed Central

    Kersey, Paul Julian; Allen, James E.; Armean, Irina; Boddu, Sanjay; Bolt, Bruce J.; Carvalho-Silva, Denise; Christensen, Mikkel; Davis, Paul; Falin, Lee J.; Grabmueller, Christoph; Humphrey, Jay; Kerhornou, Arnaud; Khobova, Julia; Aranganathan, Naveen K.; Langridge, Nicholas; Lowy, Ernesto; McDowall, Mark D.; Maheswari, Uma; Nuhn, Michael; Ong, Chuang Kee; Overduin, Bert; Paulini, Michael; Pedro, Helder; Perry, Emily; Spudich, Giulietta; Tapanari, Electra; Walts, Brandon; Williams, Gareth; Tello–Ruiz, Marcela; Stein, Joshua; Wei, Sharon; Ware, Doreen; Bolser, Daniel M.; Howe, Kevin L.; Kulesha, Eugene; Lawson, Daniel; Maslen, Gareth; Staines, Daniel M.

    2016-01-01

    Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the two resources provide a consistent set of programmatic and interactive interfaces to a rich range of data including reference sequence, gene models, transcriptional data, genetic variation and comparative analysis. This paper provides an update to the previous publications about the resource, with a focus on recent developments. These include the development of new analyses and views to represent polyploid genomes (of which bread wheat is the primary exemplar); and the continued up-scaling of the resource, which now includes over 23 000 bacterial genomes, 400 fungal genomes and 100 protist genomes, in addition to 55 genomes from invertebrate metazoa and 39 genomes from plants. This dramatic increase in the number of included genomes is one part of a broader effort to automate the integration of archival data (genome sequence, but also associated RNA sequence data and variant calls) within the context of reference genomes and make it available through the Ensembl user interfaces. PMID:26578574

  16. uPAR targeted radionuclide therapy with (177)Lu-DOTA-AE105 inhibits dissemination of metastatic prostate cancer.

    PubMed

    Persson, Morten; Juhl, Karina; Rasmussen, Palle; Brandt-Larsen, Malene; Madsen, Jacob; Ploug, Michael; Kjaer, Andreas

    2014-08-01

    The urokinase-type plasminogen activator receptor (uPAR) is implicated in cancer invasion and metastatic development in prostate cancer and provides therefore an attractive molecular target for both imaging and therapy. In this study, we provide the first in vivo data on an antimetastatic effect of uPAR radionuclide targeted therapy in such lesions and show the potential of uPAR positron emission tomography (PET) imaging for identifying small foci of metastatic cells in a mouse model of disseminating human prostate cancer. Two radiolabeled ligands were generated in high purity and specific activity: a uPAR-targeting probe ((177)Lu-DOTA-AE105) and a nonbinding control ((177)Lu-DOTA-AE105mut). Both uPAR flow cytometry and ELISA confirmed high expression levels of the target uPAR in PC-3M-LUC2.luc cells, and cell binding studies using (177)Lu-DOTA-AE105 resulted in a specific binding with an IC50 value of 100 nM in a competitive binding experiment. In vivo, uPAR targeted radionuclide therapy significantly reduced the number of metastatic lesions in the disseminated metastatic prostate cancer model, when compared to vehicle and nontargeted (177)Lu groups (p < 0.05) using bioluminescence imaging. Moreover, we found a significantly longer metastatic-free survival, with 65% of all mice without any disseminated metastatic lesions present at 65 days after first treatment dose (p = 0.047). In contrast, only 30% of all mice in the combined control groups treated with (177)Lu-DOTA-AE105mut or vehicle were without metastatic lesions. No treatment-induced toxicity was observed during the study as evaluated by observing animal weight and H&E staining of kidney tissue (dose-limiting organ). Finally, uPAR PET imaging using (64)Cu-DOTA-AE105 detected all small, disseminated metastatic foci when compared with bioluminescence imaging in a cohort of animals during the treatment study. In conclusion, uPAR targeted radiotherapy resulted in a significant reduction in the number of

  17. New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing

    PubMed Central

    Helguera, Marcelo; Rivarola, Máximo; Clavijo, Bernardo; Martis, Mihaela M.; Vanzetti, Leonardo S.; González, Sergio; Garbus, Ingrid; Leroy, Phillippe; Šimková, Hana; Valárik, Miroslav; Caccamo, Mario; Doležel, Jaroslav; Mayer, Klaus F.X.; Feuillet, Catherine; Tranquilli, Gabriela; Paniego, Norma; Echenique, Viviana

    2015-01-01

    Survey sequencing of the bread wheat (Triticum aestivum L.) genome (AABBDD) has been approached through different strategies delivering important information. However, the current wheat sequence knowledge is not complete. The aim of our study is to provide different and complementary set of data for chromosome 4D. A survey sequence was obtained by pyrosequencing of flow-sorted 4DS (7.2×) and 4DL (4.1×) arms. Single ends (SE) and long mate pairs (LMP) reads were assembled into contigs (223 Mb) and scaffolds (65 Mb) that were aligned to Aegilops tauschii draft genome (DD), anchoring 34 Mb to chromosome 4. Scaffolds annotation rendered 822 gene models. A virtual gene order comprising 1973 wheat orthologous gene loci and 381 wheat gene models was built. This order was largely consistent with the scaffold order determined based on a published high density map from the Ae. tauschii chromosome 4, using bin-mapped 4D ESTs as a common reference. The virtual order showed a higher collinearity with homeologous 4B compared to 4A. Additionally, a virtual map was constructed and ∼5700 genes (∼2200 on 4DS and ∼3500 on 4DL) predicted. The sequence and virtual order obtained here using the 454 platform were compared with the Illumina one used by the IWGSC, giving complementary information. PMID:25711827

  18. New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.

    PubMed

    Helguera, Marcelo; Rivarola, Máximo; Clavijo, Bernardo; Martis, Mihaela M; Vanzetti, Leonardo S; González, Sergio; Garbus, Ingrid; Leroy, Phillippe; Šimková, Hana; Valárik, Miroslav; Caccamo, Mario; Doležel, Jaroslav; Mayer, Klaus F X; Feuillet, Catherine; Tranquilli, Gabriela; Paniego, Norma; Echenique, Viviana

    2015-04-01

    Survey sequencing of the bread wheat (Triticum aestivum L.) genome (AABBDD) has been approached through different strategies delivering important information. However, the current wheat sequence knowledge is not complete. The aim of our study is to provide different and complementary set of data for chromosome 4D. A survey sequence was obtained by pyrosequencing of flow-sorted 4DS (7.2×) and 4DL (4.1×) arms. Single ends (SE) and long mate pairs (LMP) reads were assembled into contigs (223Mb) and scaffolds (65Mb) that were aligned to Aegilops tauschii draft genome (DD), anchoring 34Mb to chromosome 4. Scaffolds annotation rendered 822 gene models. A virtual gene order comprising 1973 wheat orthologous gene loci and 381 wheat gene models was built. This order was largely consistent with the scaffold order determined based on a published high density map from the Ae. tauschii chromosome 4, using bin-mapped 4D ESTs as a common reference. The virtual order showed a higher collinearity with homeologous 4B compared to 4A. Additionally, a virtual map was constructed and ∼5700 genes (∼2200 on 4DS and ∼3500 on 4DL) predicted. The sequence and virtual order obtained here using the 454 platform were compared with the Illumina one used by the IWGSC, giving complementary information.

  19. Funding Opportunity: Genomic Data Centers

    Cancer.gov

    Funding Opportunity CCG, Funding Opportunity Center for Cancer Genomics, CCG, Center for Cancer Genomics, CCG RFA, Center for cancer genomics rfa, genomic data analysis network, genomic data analysis network centers,

  20. The evidence for clumpy accretion in the Herbig Ae star HR 5999

    NASA Technical Reports Server (NTRS)

    Perez, M. R.; Grady, C. A.; The, P. S.

    1993-01-01

    Analysis of IUE high- and low-dispersion spectra of the young Herbig Ae star HR 5999 (HD 144668) covering 1978-1992 revealed dramatic changes in the Mg II h and k (2795.5, 2802.7 A) emission profiles, changes in the column density and distribution in radial velocity of accreting gas, and flux in the Ly(alpha), O I, and C IV emission lines, which are correlated with the UV excess luminosity. Variability in the spectral type inferred from the UV spectral energy distribution, ranging from A5 IV-III in high state to A7 III in the low state, was also observed. The trend of earlier inferred spectral type with decreasing wavelength and with increasing UV continuum flux has previously been noted as a signature of accretion disks in lower mass pre-main sequence stars (PMS) and in systems undergoing FU Orionis-type outbursts. Our data represent the first detection of similar phenomena in an intermediate mass (M greater than or equal to 2 solar mass) PMS star. Recent IUE spectra show gas accreting toward the star with velocities as high as plus 300 km/s, much as is seen toward beta Pic, and suggest that we also view this system through the debris disk. The absence of UV lines with the rotational broadening expected given the optical data (A7 IV, V sini=180 plus or minus 20 km/s for this system) also suggests that most of the UV light originates in the disk, even in the low continuum state. The dramatic variability in the column density of accreting gas, is consistent with clumpy accretion, such as has been observed toward beta Pic, is a hallmark of accretion onto young stars, and is not restricted to the clearing phase, since detectable amounts of accretion are present for stars with 0.5 Myr less than t(sub age) less than 2.8 Myr. The implications for models of beta Pic and similar systems are briefly discussed.

  1. Genome Mapping in Plant Comparative Genomics.

    PubMed

    Chaney, Lindsay; Sharp, Aaron R; Evans, Carrie R; Udall, Joshua A

    2016-09-01

    Genome mapping produces fingerprints of DNA sequences to construct a physical map of the whole genome. It provides contiguous, long-range information that complements and, in some cases, replaces sequencing data. Recent advances in genome-mapping technology will better allow researchers to detect large (>1kbp) structural variations between plant genomes. Some molecular and informatics complications need to be overcome for this novel technology to achieve its full utility. This technology will be useful for understanding phenotype responses due to DNA rearrangements and will yield insights into genome evolution, particularly in polyploids. In this review, we outline recent advances in genome-mapping technology, including the processes required for data collection and analysis, and applications in plant comparative genomics.

  2. Enabling functional genomics with genome engineering.

    PubMed

    Hilton, Isaac B; Gersbach, Charles A

    2015-10-01

    Advances in genome engineering technologies have made the precise control over genome sequence and regulation possible across a variety of disciplines. These tools can expand our understanding of fundamental biological processes and create new opportunities for therapeutic designs. The rapid evolution of these methods has also catalyzed a new era of genomics that includes multiple approaches to functionally characterize and manipulate the regulation of genomic information. Here, we review the recent advances of the most widely adopted genome engineering platforms and their application to functional genomics. This includes engineered zinc finger proteins, TALEs/TALENs, and the CRISPR/Cas9 system as nucleases for genome editing, transcription factors for epigenome editing, and other emerging applications. We also present current and potential future applications of these tools, as well as their current limitations and areas for future advances.

  3. Enabling functional genomics with genome engineering.

    PubMed

    Hilton, Isaac B; Gersbach, Charles A

    2015-10-01

    Advances in genome engineering technologies have made the precise control over genome sequence and regulation possible across a variety of disciplines. These tools can expand our understanding of fundamental biological processes and create new opportunities for therapeutic designs. The rapid evolution of these methods has also catalyzed a new era of genomics that includes multiple approaches to functionally characterize and manipulate the regulation of genomic information. Here, we review the recent advances of the most widely adopted genome engineering platforms and their application to functional genomics. This includes engineered zinc finger proteins, TALEs/TALENs, and the CRISPR/Cas9 system as nucleases for genome editing, transcription factors for epigenome editing, and other emerging applications. We also present current and potential future applications of these tools, as well as their current limitations and areas for future advances. PMID:26430154

  4. Hemolytic anemia and distal renal tubular acidosis in two Indian patients homozygous for SLC4A1/AE1 mutation A858D

    PubMed Central

    Shmukler, Boris E.; Kedar, Prabhakar S.; Warang, Prashant; Desai, Mukesh; Madkaikar, Manisha; Ghosh, Kanjaksha; Colah, Roshan B.; Alper, Seth L.

    2012-01-01

    Familial distal renal tubular acidosis (dRTA) can be caused by mutations in the Cl−/HCO3− exchanger of the renal Type A intercalated cell, kidney AE1/SLC4A1. dRTA-associated AE1 mutations have been reported in families from North America, Europe, Thailand, Malaysia, Papua-New Guinea, Taiwan, and the Philipines, but not India. The dRTA mutation AE1 A858D has been detected only in the context of compound heterozygosity. We report here two unrelated Indian patients with combined hemolytic anemia and dRTA who share homozygous A858D mutations of the AE1/SLC4A1 gene. The mutation creates a novel restriction site that is validated for diagnostic screening. PMID:20799361

  5. Activity and distribution of intracellular carbonic anhydrase II and their effects on the transport activity of anion exchanger AE1/SLC4A1

    PubMed Central

    Al-Samir, Samer; Papadopoulos, Symeon; Scheibe, Renate J; Meißner, Joachim D; Cartron, Jean-Pierre; Sly, William S; Alper, Seth L; Gros, Gerolf; Endeward, Volker

    2013-01-01

    We have investigated the previously published ‘metabolon hypothesis’ postulating that a close association of the anion exchanger 1 (AE1) and cytosolic carbonic anhydrase II (CAII) exists that greatly increases the transport activity of AE1. We study whether there is a physical association of and direct functional interaction between CAII and AE1 in the native human red cell and in tsA201 cells coexpressing heterologous fluorescent fusion proteins CAII-CyPet and YPet-AE1. In these doubly transfected tsA201 cells, YPet-AE1 is clearly associated with the cell membrane, whereas CAII-CyPet is homogeneously distributed throughout the cell in a cytoplasmic pattern. Förster resonance energy transfer measurements fail to detect close proximity of YPet-AE1 and CAII-CyPet. The absence of an association of AE1 and CAII is supported by immunoprecipitation experiments using Flag-antibody against Flag-tagged AE1 expressed in tsA201 cells, which does not co-precipitate native CAII but co-precipitates coexpressed ankyrin. Both the CAII and the AE1 fusion proteins are fully functional in tsA201 cells as judged by CA activity and by cellular HCO3− permeability () sensitive to inhibition by 4,4′-Diisothiocyano-2,2′-stilbenedisulfonic acid. Expression of the non-catalytic CAII mutant V143Y leads to a drastic reduction of endogenous CAII and to a corresponding reduction of total intracellular CA activity. Overexpression of an N-terminally truncated CAII lacking the proposed site of interaction with the C-terminal cytoplasmic tail of AE1 substantially increases intracellular CA activity, as does overexpression of wild-type CAII. These variously co-transfected tsA201 cells exhibit a positive correlation between cellular and intracellular CA activity. The relationship reflects that expected from changes in cytoplasmic CA activity improving substrate supply to or removal from AE1, without requirement for a CAII–AE1 metabolon involving physical interaction. A functional

  6. Navigating yeast genome maintenance with functional genomics.

    PubMed

    Measday, Vivien; Stirling, Peter C

    2016-03-01

    Maintenance of genome integrity is a fundamental requirement of all organisms. To address this, organisms have evolved extremely faithful modes of replication, DNA repair and chromosome segregation to combat the deleterious effects of an unstable genome. Nonetheless, a small amount of genome instability is the driver of evolutionary change and adaptation, and thus a low level of instability is permitted in populations. While defects in genome maintenance almost invariably reduce fitness in the short term, they can create an environment where beneficial mutations are more likely to occur. The importance of this fact is clearest in the development of human cancer, where genome instability is a well-established enabling characteristic of carcinogenesis. This raises the crucial question: what are the cellular pathways that promote genome maintenance and what are their mechanisms? Work in model organisms, in particular the yeast Saccharomyces cerevisiae, has provided the global foundations of genome maintenance mechanisms in eukaryotes. The development of pioneering genomic tools inS. cerevisiae, such as the systematic creation of mutants in all nonessential and essential genes, has enabled whole-genome approaches to identifying genes with roles in genome maintenance. Here, we review the extensive whole-genome approaches taken in yeast, with an emphasis on functional genomic screens, to understand the genetic basis of genome instability, highlighting a range of genetic and cytological screening modalities. By revealing the biological pathways and processes regulating genome integrity, these analyses contribute to the systems-level map of the yeast cell and inform studies of human disease, especially cancer.

  7. Navigating yeast genome maintenance with functional genomics.

    PubMed

    Measday, Vivien; Stirling, Peter C

    2016-03-01

    Maintenance of genome integrity is a fundamental requirement of all organisms. To address this, organisms have evolved extremely faithful modes of replication, DNA repair and chromosome segregation to combat the deleterious effects of an unstable genome. Nonetheless, a small amount of genome instability is the driver of evolutionary change and adaptation, and thus a low level of instability is permitted in populations. While defects in genome maintenance almost invariably reduce fitness in the short term, they can create an environment where beneficial mutations are more likely to occur. The importance of this fact is clearest in the development of human cancer, where genome instability is a well-established enabling characteristic of carcinogenesis. This raises the crucial question: what are the cellular pathways that promote genome maintenance and what are their mechanisms? Work in model organisms, in particular the yeast Saccharomyces cerevisiae, has provided the global foundations of genome maintenance mechanisms in eukaryotes. The development of pioneering genomic tools inS. cerevisiae, such as the systematic creation of mutants in all nonessential and essential genes, has enabled whole-genome approaches to identifying genes with roles in genome maintenance. Here, we review the extensive whole-genome approaches taken in yeast, with an emphasis on functional genomic screens, to understand the genetic basis of genome instability, highlighting a range of genetic and cytological screening modalities. By revealing the biological pathways and processes regulating genome integrity, these analyses contribute to the systems-level map of the yeast cell and inform studies of human disease, especially cancer. PMID:26323482

  8. Exploring Other Genomes: Bacteria.

    ERIC Educational Resources Information Center

    Flannery, Maura C.

    2001-01-01

    Points out the importance of genomes other than the human genome project and provides information on the identified bacterial genomes Pseudomonas aeuroginosa, Leprosy, Cholera, Meningitis, Tuberculosis, Bubonic Plague, and plant pathogens. Considers the computer's use in genome studies. (Contains 14 references.) (YDS)

  9. Role of adaptor proteins and clathrin in the trafficking of human kidney anion exchanger 1 (kAE1) to the cell surface.

    PubMed

    Junking, Mutita; Sawasdee, Nunghathai; Duangtum, Natapol; Cheunsuchon, Boonyarit; Limjindaporn, Thawornchai; Yenchitsomanus, Pa-thai

    2014-07-01

    Kidney anion exchanger 1 (kAE1) plays an important role in acid-base homeostasis by mediating chloride/bicarbornate (Cl-/HCO3-) exchange at the basolateral membrane of α-intercalated cells in the distal nephron. Impaired intracellular trafficking of kAE1 caused by mutations of SLC4A1 encoding kAE1 results in kidney disease - distal renal tubular acidosis (dRTA). However, it is not known how the intracellular sorting and trafficking of kAE1 from trans-Golgi network (TGN) to the basolateral membrane occurs. Here, we studied the role of basolateral-related sorting proteins, including the mu1 subunit of adaptor protein (AP) complexes, clathrin and protein kinase D, on kAE1 trafficking in polarized and non-polarized kidney cells. By using RNA interference, co-immunoprecipitation, yellow fluorescent protein-based protein fragment complementation assays and immunofluorescence staining, we demonstrated that AP-1 mu1A, AP-3 mu1, AP-4 mu1 and clathrin (but not AP-1 mu1B, PKD1 or PKD2) play crucial roles in intracellular sorting and trafficking of kAE1. We also demonstrated colocalization of kAE1 and basolateral-related sorting proteins in human kidney tissues by double immunofluorescence staining. These findings indicate that AP-1 mu1A, AP-3 mu1, AP-4 mu1 and clathrin are required for kAE1 sorting and trafficking from TGN to the basolateral membrane of acid-secreting α-intercalated cells. PMID:24698155

  10. Role of adaptor proteins and clathrin in the trafficking of human kidney anion exchanger 1 (kAE1) to the cell surface.

    PubMed

    Junking, Mutita; Sawasdee, Nunghathai; Duangtum, Natapol; Cheunsuchon, Boonyarit; Limjindaporn, Thawornchai; Yenchitsomanus, Pa-thai

    2014-07-01

    Kidney anion exchanger 1 (kAE1) plays an important role in acid-base homeostasis by mediating chloride/bicarbornate (Cl-/HCO3-) exchange at the basolateral membrane of α-intercalated cells in the distal nephron. Impaired intracellular trafficking of kAE1 caused by mutations of SLC4A1 encoding kAE1 results in kidney disease - distal renal tubular acidosis (dRTA). However, it is not known how the intracellular sorting and trafficking of kAE1 from trans-Golgi network (TGN) to the basolateral membrane occurs. Here, we studied the role of basolateral-related sorting proteins, including the mu1 subunit of adaptor protein (AP) complexes, clathrin and protein kinase D, on kAE1 trafficking in polarized and non-polarized kidney cells. By using RNA interference, co-immunoprecipitation, yellow fluorescent protein-based protein fragment complementation assays and immunofluorescence staining, we demonstrated that AP-1 mu1A, AP-3 mu1, AP-4 mu1 and clathrin (but not AP-1 mu1B, PKD1 or PKD2) play crucial roles in intracellular sorting and trafficking of kAE1. We also demonstrated colocalization of kAE1 and basolateral-related sorting proteins in human kidney tissues by double immunofluorescence staining. These findings indicate that AP-1 mu1A, AP-3 mu1, AP-4 mu1 and clathrin are required for kAE1 sorting and trafficking from TGN to the basolateral membrane of acid-secreting α-intercalated cells.

  11. Genome Maps, a new generation genome browser.

    PubMed

    Medina, Ignacio; Salavert, Francisco; Sanchez, Rubén; de Maria, Alejandro; Alonso, Roberto; Escobar, Pablo; Bleda, Marta; Dopazo, Joaquín

    2013-07-01

    Genome browsers have gained importance as more genomes and related genomic information become available. However, the increase of information brought about by new generation sequencing technologies is, at the same time, causing a subtle but continuous decrease in the efficiency of conventional genome browsers. Here, we present Genome Maps, a genome browser that implements an innovative model of data transfer and management. The program uses highly efficient technologies from the new HTML5 standard, such as scalable vector graphics, that optimize workloads at both server and client sides and ensure future scalability. Thus, data management and representation are entirely carried out by the browser, without the need of any Java Applet, Flash or other plug-in technology installation. Relevant biological data on genes, transcripts, exons, regulatory features, single-nucleotide polymorphisms, karyotype and so forth, are imported from web services and are available as tracks. In addition, several DAS servers are already included in Genome Maps. As a novelty, this web-based genome browser allows the local upload of huge genomic data files (e.g. VCF or BAM) that can be dynamically visualized in real time at the client side, thus facilitating the management of medical data affected by privacy restrictions. Finally, Genome Maps can easily be integrated in any web application by including only a few lines of code. Genome Maps is an open source collaborative initiative available in the GitHub repository (https://github.com/compbio-bigdata-viz/genome-maps). Genome Maps is available at: http://www.genomemaps.org.

  12. Genome Maps, a new generation genome browser

    PubMed Central

    Medina, Ignacio; Salavert, Francisco; Sanchez, Rubén; de Maria, Alejandro; Alonso, Roberto; Escobar, Pablo; Bleda, Marta; Dopazo, Joaquín

    2013-01-01

    Genome browsers have gained importance as more genomes and related genomic information become available. However, the increase of information brought about by new generation sequencing technologies is, at the same time, causing a subtle but continuous decrease in the efficiency of conventional genome browsers. Here, we present Genome Maps, a genome browser that implements an innovative model of data transfer and management. The program uses highly efficient technologies from the new HTML5 standard, such as scalable vector graphics, that optimize workloads at both server and client sides and ensure future scalability. Thus, data management and representation are entirely carried out by the browser, without the need of any Java Applet, Flash or other plug-in technology installation. Relevant biological data on genes, transcripts, exons, regulatory features, single-nucleotide polymorphisms, karyotype and so forth, are imported from web services and are available as tracks. In addition, several DAS servers are already included in Genome Maps. As a novelty, this web-based genome browser allows the local upload of huge genomic data files (e.g. VCF or BAM) that can be dynamically visualized in real time at the client side, thus facilitating the management of medical data affected by privacy restrictions. Finally, Genome Maps can easily be integrated in any web application by including only a few lines of code. Genome Maps is an open source collaborative initiative available in the GitHub repository (https://github.com/compbio-bigdata-viz/genome-maps). Genome Maps is available at: http://www.genomemaps.org. PMID:23748955

  13. Genome Maps, a new generation genome browser.

    PubMed

    Medina, Ignacio; Salavert, Francisco; Sanchez, Rubén; de Maria, Alejandro; Alonso, Roberto; Escobar, Pablo; Bleda, Marta; Dopazo, Joaquín

    2013-07-01

    Genome browsers have gained importance as more genomes and related genomic information become available. However, the increase of information brought about by new generation sequencing technologies is, at the same time, causing a subtle but continuous decrease in the efficiency of conventional genome browsers. Here, we present Genome Maps, a genome browser that implements an innovative model of data transfer and management. The program uses highly efficient technologies from the new HTML5 standard, such as scalable vector graphics, that optimize workloads at both server and client sides and ensure future scalability. Thus, data management and representation are entirely carried out by the browser, without the need of any Java Applet, Flash or other plug-in technology installation. Relevant biological data on genes, transcripts, exons, regulatory features, single-nucleotide polymorphisms, karyotype and so forth, are imported from web services and are available as tracks. In addition, several DAS servers are already included in Genome Maps. As a novelty, this web-based genome browser allows the local upload of huge genomic data files (e.g. VCF or BAM) that can be dynamically visualized in real time at the client side, thus facilitating the management of medical data affected by privacy restrictions. Finally, Genome Maps can easily be integrated in any web application by including only a few lines of code. Genome Maps is an open source collaborative initiative available in the GitHub repository (https://github.com/compbio-bigdata-viz/genome-maps). Genome Maps is available at: http://www.genomemaps.org. PMID:23748955

  14. Removal of Fe3+ and Zn2+ from plasma metalloproteins by iron chelating therapeutics depicted with SEC-ICP-AES.

    PubMed

    Sooriyaarachchi, Melani; Gailer, Jürgen

    2010-08-28

    The iron chelation therapy drugs desferrioxamine B (DFO) and deferiprone (DFP) are used to treat iron overload patients, but not much is known about their adverse effects on other essential metals in vivo. After the addition of a clinically relevant dose of DFP or an equimolar dose of DFO to human plasma in vitro, the mixtures were analyzed by size exclusion chromatography (SEC) coupled to an inductively coupled plasma atomic emission spectrometer (ICP-AES). Simultaneous detection of the emission lines of copper, iron and zinc allowed the visualization of changes that these drugs exerted at the metalloprotein level. After the addition of DFP, a <10 kDa novel Fe-peak was detected and identified as (DFP)(3)Fe, whereas DFO resulted in the elution of a much smaller amount of Fe in this elution range. In fact, DFP was approximately 8-times more efficient than DFO regarding the removal of Fe from plasma proteins. The addition of both iron chelators also resulted in the elution of a <10 kDa novel Zn-peak. DFP abstracted twice as much Zn from plasma proteins compared to DFO. The identification of one of these peaks as (DFP)(2)Zn establishes a feasible biomolecular basis for the etiology of Zn-deficiency in patients that undergo long-term treatment with these drugs. Our results demonstrate that the analysis of plasma by SEC-ICP-AES can simultaneously provide insight into the efficacy of chelation therapy drugs and their adverse health effects at the metalloprotein level. Thus, SEC-ICP-AES emerges as a useful analytical tool to visualize health-relevant bioinorganic chemistry-related reactions of medicinal drugs in blood plasma in vitro.

  15. Application of microwave plasma atomic emission spectrometry (MP-AES) for environmental monitoring of industrially contaminated sites in Hyderabad city.

    PubMed

    Kamala C T; Balaram V; Dharmendra V; Satyanarayanan M; Subramanyam K S V; Krishnaiah A

    2014-11-01

    Recently introduced microwave plasma-atomic emission spectroscopy (MP-AES) represents yet another and very important addition to the existing array of modern instrumental analytical techniques. In this study, an attempt is made to summarize the performance characteristics of MP-AES and its potential as an analytical tool for environmental studies with some practical examples from Patancheru and Uppal industrial sectors of Hyderabad city. A range of soil, sediment, water reference materials, particulate matter, and real-life samples were chosen to evaluate the performance of this new analytical technique. Analytical wavelengths were selected considering the interference effects of other concomitant elements present in different sample solutions. The detection limits for several elements were found to be in the range from 0.05 to 5 ng/g. The trace metals analyzed in both the sectors followed the topography with more pollution in the low-lying sites. The metal contents were found to be more in ground waters than surface waters. Since a decade, the pollutants are transfered from Patancheru industrial area to Musi River. After polluting Nakkavagu and turning huge tracts of agricultural lands barren besides making people residing along the rivulet impotent and sick, industrialists of Patancheru are shifting the effluents to downstream of Musi River through an 18-km pipeline from Patancheru. Since the effluent undergoes primary treatment at Common Effluent Treatment Plant (CETP) at Patanchru and travels through pipeline and mixes with sewage, the organic effluents will be diluted. But the inorganic pollutants such as heavy and toxic metals tend to accumulate in the environmental segments near and downstreams of Musi River. The data generated by MP-AES of toxic metals like Zn, Cu, and Cr in the ground and surface waters can only be attributed to pollution from Patancheru since no other sources are available to Musi River.

  16. Allocation of the S-genome chromosomes of Aegilops variabilis Eig. carrying powdery mildew resistance in triticale (× Triticosecale Wittmack).

    PubMed

    Kwiatek, M; Belter, J; Majka, M; Wiśniewska, H

    2016-03-01

    It has been hypothesized that the powdery mildew adult plant resistance (APR) controlled by the Pm13 gene in Aegilops longissima Schweinf. & Muschl. (S(l)S(l)) has been evolutionary transferred to Aegilops variabilis Eig. (UUSS). The molecular marker analysis and the visual evaluation of powdery mildew symptoms in Ae. variabilis and the Ae. variabilis × Secale cereale amphiploid forms (2n = 6x = 42, UUSSRR) showed the presence of product that corresponded to Pm13 marker and the lower infection level compared to susceptible model, respectively. This study also describes the transfer of Ae. variabilis Eig. (2n = 4x = 28, U(v)U(v)S(v)S(v)) chromosomes, carrying powdery mildew resistance, into triticale (× Triticosecale Wittm., 2n = 6x = 42, AABBRR) using Ae. variabilis × S. cereale amphiploid forms. The individual chromosomes of Ae. variabilis, triticale 'Lamberto' and hybrids were characterized by genomic and fluorescence in situ hybridization (GISH/FISH). The chromosome configurations of obtained hybrid forms were studied at first metaphase of meiosis of pollen mother cells (PMCs) using GISH. The statistical analysis showed that the way of S-genome chromosome pairing and transmission to subsequent hybrid generations was diploid-like and had no influence on chromosome pairing of triticale chromosomes. The cytogenetic study of hybrid forms were supported by the marker-assisted selection using Pm13 marker and visual evaluation of natural infection by Blumeria graminis, that allowed to select the addition or substitution lines of hybrids carrying chromosome 3S(v) which were tolerant to the powdery mildew infection.

  17. Allocation of the S-genome chromosomes of Aegilops variabilis Eig. carrying powdery mildew resistance in triticale (× Triticosecale Wittmack).

    PubMed

    Kwiatek, M; Belter, J; Majka, M; Wiśniewska, H

    2016-03-01

    It has been hypothesized that the powdery mildew adult plant resistance (APR) controlled by the Pm13 gene in Aegilops longissima Schweinf. & Muschl. (S(l)S(l)) has been evolutionary transferred to Aegilops variabilis Eig. (UUSS). The molecular marker analysis and the visual evaluation of powdery mildew symptoms in Ae. variabilis and the Ae. variabilis × Secale cereale amphiploid forms (2n = 6x = 42, UUSSRR) showed the presence of product that corresponded to Pm13 marker and the lower infection level compared to susceptible model, respectively. This study also describes the transfer of Ae. variabilis Eig. (2n = 4x = 28, U(v)U(v)S(v)S(v)) chromosomes, carrying powdery mildew resistance, into triticale (× Triticosecale Wittm., 2n = 6x = 42, AABBRR) using Ae. variabilis × S. cereale amphiploid forms. The individual chromosomes of Ae. variabilis, triticale 'Lamberto' and hybrids were characterized by genomic and fluorescence in situ hybridization (GISH/FISH). The chromosome configurations of obtained hybrid forms were studied at first metaphase of meiosis of pollen mother cells (PMCs) using GISH. The statistical analysis showed that the way of S-genome chromosome pairing and transmission to subsequent hybrid generations was diploid-like and had no influence on chromosome pairing of triticale chromosomes. The cytogenetic study of hybrid forms were supported by the marker-assisted selection using Pm13 marker and visual evaluation of natural infection by Blumeria graminis, that allowed to select the addition or substitution lines of hybrids carrying chromosome 3S(v) which were tolerant to the powdery mildew infection. PMID:25868512

  18. JGI Fungal Genomics Program

    SciTech Connect

    Grigoriev, Igor V.

    2011-03-14

    Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

  19. Genomic Encyclopedia of Fungi

    SciTech Connect

    Grigoriev, Igor

    2012-08-10

    Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 150 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

  20. A Complete Sequence of the T. tengcongensis Genome

    PubMed Central

    Bao, Qiyu; Tian, Yuqing; Li, Wei; Xu, Zuyuan; Xuan, Zhenyu; Hu, Songnian; Dong, Wei; Yang, Jian; Chen, Yanjiong; Xue, Yanfen; Xu, Yi; Lai, Xiaoqin; Huang, Li; Dong, Xiuzhu; Ma, Yanhe; Ling, Lunjiang; Tan, Huarong; Chen, Runsheng; Wang, Jian; Yu, Jun; Yang, Huanming

    2002-01-01

    Thermoanaerobacter tengcongensis is a rod-shaped, gram-negative, anaerobic eubacterium that was isolated from a freshwater hot spring in Tengchong, China. Using a whole-genome-shotgun method, we sequenced its 2,689,445-bp genome from an isolate, MB4T (Genbank accession no. AE008691). The genome encodes 2588 predicted coding sequences (CDS). Among them, 1764 (68.2%) are classified according to homology to other documented proteins, and the rest, 824 CDS (31.8%), are functionally unknown. One of the interesting features of the T. tengcongensis genome is that 86.7% of its genes are encoded on the leading strand of DNA replication. Based on protein sequence similarity, the T. tengcongensis genome is most similar to that of Bacillus halodurans, a mesophilic eubacterium, among all fully sequenced prokaryotic genomes up to date. Computational analysis on genes involved in basic metabolic pathways supports the experimental discovery that T. tengcongensis metabolizes sugars as principal energy and carbon source and utilizes thiosulfate and element sulfur, but not sulfate, as electron acceptors. T. tengcongensis, as a gram-negative rod by empirical definitions (such as staining), shares many genes that are characteristics of gram-positive bacteria whereas it is missing molecular components unique to gram-negative bacteria. A strong correlation between the G + C content of tDNA and rDNA genes and the optimal growth temperature is found among the sequenced thermophiles. It is concluded that thermophiles are a biologically and phylogenetically divergent group of prokaryotes that have converged to sustain extreme environmental conditions over evolutionary timescale. [Supplemental material is available online at http://www.genome.org.] PMID:11997336

  1. Genomics and Health Impact Update

    MedlinePlus

    ... Genomics in Practice Newborn Screening Pharmacogenomics Reproductive Health Tools and Databases About the Genomics & Health Impact Update The Office of Public Health Genomics provides updated and credible ...

  2. Plant genomics: an overview.

    PubMed

    Campos-de Quiroz, Hugo

    2002-01-01

    Recent technological advancements have substantially expanded our ability to analyze and understand plant genomes and to reduce the gap existing between genotype and phenotype. The fast evolving field of genomics allows scientists to analyze thousand of genes in parallel, to understand the genetic architecture of plant genomes and also to isolate the genes responsible for mutations. Furthermore, whole genomes can now be sequenced. This review addresses these issues and also discusses ways to extract biological meaning from DNA data. Although genomic issuesare addressed from a plant perspective, this review provides insights into the genomic analyses of other organisms. PMID:12462991

  3. Phylodynamic Analysis Reveals CRF01_AE Dissemination between Japan and Neighboring Asian Countries and the Role of Intravenous Drug Use in Transmission

    PubMed Central

    Shiino, Teiichiro; Hattori, Junko; Yokomaku, Yoshiyuki; Iwatani, Yasumasa; Sugiura, Wataru

    2014-01-01

    Background One major circulating HIV-1 subtype in Southeast Asian countries is CRF01_AE, but little is known about its epidemiology in Japan. We conducted a molecular phylodynamic study of patients newly diagnosed with CRF01_AE from 2003 to 2010. Methods Plasma samples from patients registered in Japanese Drug Resistance HIV-1 Surveillance Network were analyzed for protease-reverse transcriptase sequences; all sequences undergo subtyping and phylogenetic analysis using distance-matrix-based, maximum likelihood and Bayesian coalescent Markov Chain Monte Carlo (MCMC) phylogenetic inferences. Transmission clusters were identified using interior branch test and depth-first searches for sub-tree partitions. Times of most recent common ancestor (tMRCAs) of significant clusters were estimated using Bayesian MCMC analysis. Results Among 3618 patient registered in our network, 243 were infected with CRF01_AE. The majority of individuals with CRF01_AE were Japanese, predominantly male, and reported heterosexual contact as their risk factor. We found 5 large clusters with ≥5 members and 25 small clusters consisting of pairs of individuals with highly related CRF01_AE strains. The earliest cluster showed a tMRCA of 1996, and consisted of individuals with their known risk as heterosexual contacts. The other four large clusters showed later tMRCAs between 2000 and 2002 with members including intravenous drug users (IVDU) and non-Japanese, but not men who have sex with men (MSM). In contrast, small clusters included a high frequency of individuals reporting MSM risk factors. Phylogenetic analysis also showed that some individuals infected with HIV strains spread in East and South-eastern Asian countries. Conclusions Introduction of CRF01_AE viruses into Japan is estimated to have occurred in the 1990s. CFR01_AE spread via heterosexual behavior, then among persons connected with non-Japanese, IVDU, and MSM. Phylogenetic analysis demonstrated that some viral variants are largely

  4. Imaging of human pancreatic cancer xenografts by single-photon emission computed tomography with 99mTc-Hynic-PEG-AE105

    PubMed Central

    ZHANG, XIN; TIAN, YE; SUN, FANGFANG; FENG, HONGBO; YANG, CHUN; GONG, XIAOYAN; TAN, GUANG

    2015-01-01

    The elevated expression of urokinase-type plasminogen activator receptor (uPAR) is associated with the poor prognosis of pancreatic cancer patients. Thus, uPAR is a promising candidate as a molecular target for the non-invasive imaging of pancreatic cancer. The present study aimed to develop a technetium-99m (99mTc)-labeled uPAR-binding peptide for non-invasive single-photon emission computed tomography (SPECT) assessment of uPAR expression in pancreatic cancer xenograft models. A linear high-affinity uPAR peptide antagonist, Hynic-PEG-AE105, was labeled with 99mTc. Human uPAR-positive pancreatic cancer BxPC-3 cells were inoculated into nude mice. SPECT was performed in the pancreatic cancer xenograft mice models. The results showed that the rate of the 99mTc labeling of Hynic-PEG-AE105 was 97.72±1.73%. The tumor uptake of 99mTc-Hynic-PEG-AE105 was higher than the control inactive peptide 99mTc-Hynic-PEG-AE105mut at 4 h (3.37±0.11 vs. 1.36±0.18; P<0.001) and 6 h (3.64±0.25 vs. 1.28±0.20; P<0.001) (n=10). Moreover, a significant correlation was observed between the tumor uptake of 99mTc-Hynic-PEG-AE105 and uPAR expression (r=0.791, P=0.006). In conclusion, in the present study, a peptide-based SPECT tracer, 99mTc-Hynic-PEG-AE105, with a high purity and specific radioactivity was synthesized. 99mTc-Hynic-PEG-AE105 is a promising agent for the non-invasive determination of uPAR expression in pancreatic cancer. PMID:26622829

  5. Aedes (Stegomyia) aegypti and Aedes (Howardina) cozumelensis in Yucatán State, México, with a summary of published collection records for Ae. cozumelensis.

    PubMed

    García-Rejón, Julián E; López-Uribe, Mildred P; Loroño-Pino, María Alba; Arana-Guardia, Roger; Puc-Tinal, Maria; López-Uribe, Genny M; Coba-Tún, Carlos; Baak-Baak, Carlos M; Machain-Williams, Carlos; Reyes-Solis, Guadalupe C; Lozano-Fuentes, Saul; Saavedra-Rodriguez, Karla; Black, William C; Beaty, Barry J; Eisen, Lars

    2012-12-01

    We collected mosquito immatures from artificial containers during 2010-2011 from 26 communities, ranging in size from small rural communities to large urban centers, located in different parts of Yucatán State in southeastern México. The arbovirus vector Aedes (Stegomyia) aegypti was collected from all 26 examined communities, and nine of the communities also yielded another container-inhabiting Aedes mosquito: Aedes (Howardina) cozumelensis. The communities from which Ae. cozumelensis were collected were all small rural communities (<6,000 inhabitants) in the north-central part of Yucatán State. These new collection records for Ae. cozumelensis demonstrate that this mosquito has a far broader geographic range in the Yucatán Peninsula than previously known. Ae. cozumelensis immatures were collected from both residential premises and cemeteries, with specimens recovered from rock holes as well as various artificial containers including metal cans, flower vases, buckets, tires, and a water storage tank. The co-occurrence with Ae. aegypti in small rural communities poses intriguing questions regarding linkages between these mosquitoes, including the potential for direct competition for larval development sites. Additional studies are needed to determine how commonly Ae. cozumelensis feeds on human blood and whether it is naturally infected with arboviruses or other pathogens of medical or veterinary importance. We also summarize the published records for Ae. cozumelensis, which are restricted to collections from México's Yucatán Peninsula and Belize, and uniformly represent geographic locations where Ae. aegypti can be expected to occur.

  6. Aedes (Stegomyia) aegypti and Aedes (Howardina) cozumelensis in Yucatán State, México, with a summary of published collection records for Ae. cozumelensis

    PubMed Central

    García-Rejón, Julián E.; López-Uribe, Mildred P.; Loroño-Pino, María Alba; Arana-Guardia, Roger; Puc-Tinal, Maria; López-Uribe, Genny M.; Coba-Tún, Carlos; Baak-Baak, Carlos M.; Machain-Williams, Carlos; Reyes-Solis, Guadalupe C.; Lozano-Fuentes, Saul; Saavedra-Rodriguez, Karla; Black IV, William C.; Beaty, Barry J.; Eisen, Lars

    2013-01-01

    We collected mosquito immatures from artificial containers during 2010–2011 from 26 communities, ranging in size from small rural communities to large urban centers, located in different parts of Yucatán State in southeastern México. The arbovirus vector Aedes (Stegomyia) aegypti was collected from all 26 examined communities, and nine of the communities also yielded another container-inhabiting Aedes mosquito: Aedes (Howardina) cozumelensis. The communities from which Ae. cozumelensis were collected were all small, rural communities (<6,000 inhabitants) in the north-central part of Yucatán State. These new collection records for Ae. cozumelensis demonstrate that this mosquito has a far broader geographic range in the Yucatán Peninsula than previously known. Ae. cozumelensis immatures were collected from both residential premises and cemeteries, with specimens recovered from rock holes as well as various artificial containers including metal cans, flower vases, buckets, tires and a water storage tank. The co-occurrence with Ae. aegypti in small rural communities poses intriguing questions regarding linkages between these mosquitoes, including the potential for direct competition for larval development sites. Additional studies are needed to determine how commonly Ae. cozumelensis feeds on human blood and whether it is naturally infected with arboviruses or other pathogens of medical or veterinary importance. We also summarize the published records for Ae. cozumelensis, which are restricted to collections from México’s Yucatán Peninsula and Belize, and uniformly represent geographic locations where Ae. aegypti can be expected to occur. PMID:23181861

  7. A spectroscopic survey of Herbig Ae/Be stars with X-shooter - I. Stellar parameters and accretion rates

    NASA Astrophysics Data System (ADS)

    Fairlamb, J. R.; Oudmaijer, R. D.; Mendigutía, I.; Ilee, J. D.; van den Ancker, M. E.

    2015-10-01

    Herbig Ae/Be stars (HAeBes) span a key mass range that links low- and high-mass stars, and thus provide an ideal window from which to explore their formation. This paper presents Very Large Telescope/X-shooter spectra of 91 HAeBes, the largest spectroscopic study of HAeBe accretion to date. A homogeneous approach to determining stellar parameters is undertaken for the majority of the sample. Measurements of the ultraviolet are modelled within the context of magnetospheric accretion, allowing a direct determination of mass accretion rates. Multiple correlations are observed across the sample between accretion and stellar properties: the youngest and often most massive stars are the strongest accretors, and there is an almost 1:1 relationship between the accretion luminosity and stellar luminosity. Despite these overall trends of increased accretion rates in HAeBes when compared to classical T Tauri stars, we also find noticeable differences in correlations when considering the Herbig Ae and Herbig Be subsets. This, combined with the difficulty in applying a magnetospheric accretion model to some of the Herbig Be stars, could suggest that another form of accretion may be occurring within Herbig Be mass range.

  8. Evolutionary Dynamics and Complicated Genetic Transmission Network Patterns of HIV-1 CRF01_AE among MSM in Shanghai, China

    PubMed Central

    Li, Xiaoshan; Xue, Yile; Lin, Yi; Gai, Jing; Zhang, Lei; Cheng, Hua; Ning, Zhen; Zhou, Leiming; Zhu, Kexin; Vanham, Guido; Kang, Laiyi; Wang, Ying; Zhuang, Minghua; Pan, Qichao; Zhong, Ping

    2016-01-01

    To explore the evolutionary dynamics and molecular transmission patterns of HIV-1 CRF01_AE in depth among men who have sex with men (MSM) in Shanghai, we constructed phylogenetic tree and genetic transmission networks based on 1, 152 pol sequences from MSM, 282 from other risk groups and 795 references. Phylogenetic analyses identified two distinct major CRF01_AE lineages and a Shanghai-based sub-lineage. The estimated tMRCAs for lineage 1 and 2 were 1996.0 (1992.9–1999.2) and 1997.8 (1994.3–2001.4), respectively. Of the 1, 152 MSM, 681 (59.1%) were identified as belonging to 241 separate networks. Of these 681 individuals in networks, 74.2% were linked to cases diagnosed in different years, 4.3% were linked to heterosexual women, and 0.7% were linked to persons who inject drugs. A total of 71 networks including 180 individuals diagnosed in Shanghai with the same domicile were found. Recent infection (P = 0.022) and sampling year after 2011 (P < 0.001) were significantly associated with potential transmission links among the networks. Besides, a significant transmission of viruses with drug resistant mutations at V179D/E were found in the networks. Given these findings, we propose that genetic transmission analysis is a useful tool in HIV intervention strategies to curb the spread of virus and promoting public health. PMID:27698457

  9. Comparision of ICP-OES and MP-AES in determing soil nutrients by Mechlich3 method

    NASA Astrophysics Data System (ADS)

    Tonutare, Tonu; Penu, Priit; Krebstein, Kadri; Rodima, Ako; Kolli, Raimo; Shanskiy, Merrit

    2014-05-01

    Accurate, routine testing of nutrients in soil samples is critical to understanding soil potential fertility. There are different factors which must be taken into account selecting the best analytical technique for soil laboratory analysis. Several techniques can provide adequate detection range for same analytical subject. In similar cases the choise of technique will depend on factors such as sample throughput, required infrastructure, ease of use, used chemicals and need for gas supply and operating costs. Mehlich 3 extraction method is widely used for the determination of the plant available nutrient elements contents in agricultural soils. For determination of Ca, K, and Mg from soil extract depending of laboratory ICP and AAS techniques are used, also flame photometry for K in some laboratories. For the determination of extracted P is used ICP or Vis spectrometry. The excellent sensitivity and wide working range for all extracted elements make ICP a nearly ideal method, so long as the sample throughput is big enough to justify the initial capital outlay. Other advantage of ICP techniques is the multiplex character (simultaneous acquisition of all wavelengths). Depending on element the detection limits are in range 0.1 - 1000 μg/L. For smaller laboratories with low sample throughput requirements the use of AAS is more common. Flame AAS is a fast, relatively cheap and easy technique for analysis of elements. The disadvantages of the method is single element analysis and use of flammable gas, like C2H2 and oxidation gas N2O for some elements. Detection limits of elements for AAS lays from 1 to 1000 μg/L. MP-AES offers a unique alternative to both, AAS and ICP-OES techniques with its detection power, speed of analysis. MP-AES is quite new, simple and relatively inexpensive multielemental technique, which is use self-sustained atmospheric pressure microwave plasma (MP) using nitrogen gas generated by nitrogen generator. Therefore not needs for argon and

  10. Genomic Data Commons | Office of Cancer Genomics

    Cancer.gov

    The NCI’s Center for Cancer Genomics launches the Genomic Data Commons (GDC), a unified data sharing platform for the cancer research community. The mission of the GDC is to enable data sharing across the entire cancer research community, to ultimately support precision medicine in oncology.

  11. A simian-human immunodeficiency virus carrying the rt gene from Chinese CRF01_AE strain of HIV is sensitive to nucleoside reverse transcriptase inhibitors and has a highly genetic stability in vivo.

    PubMed

    Wang, Wei; Yao, Nan; Ju, Bin; Dong, Zhihui; Cong, Zhe; Jiang, Hong; Qin, Chuan; Wei, Qiang

    2014-06-01

    Human immunodeficiency virus (HIV)-1 subtype CRF01_AE is one of the major HIV-1 subtypes that dominate the global epidemic. However, its drug resistance, associated mutations, and viral fitness have not been systemically studied, because available chimeric simian-HIVs (SHIVs) usually express the HIV-1 reverse transcriptase (rt) gene of subtype B HIV-1, which is different from subtype CRF01_AE HIV-1. In this study, a recombinant plasmid, pRT-SHIV/AE, was constructed to generate a chimeric RT-SHIV/AE by replacing the rt gene of simian immunodeficiency virus (SIVmac239) with the counterpart of Chinese HIV-1 subtype CRF01_AE. The infectivity, replication capacity, co-receptor tropism, drug sensitivity, and genetic stability of RT-SHIV/AE were characterized. The new chimeric RT-SHIV/AE effectively infected and replicated in human T cell line and rhesus peripheral blood mononuclear cells (rhPBMC). The rt gene of RT-SHIV/AE lacked the common mutation (T215I) associated with drug resistance. RT-SHIV-AE retained infectivity and immunogenicity, similar to that of its counterpart RT-SHIV/TC virus following intravenous inoculation in Chinese rhesus macaque. RT-SHIV-AE was more sensitive to nucleoside reverse transcriptase inhibitors (NRTIs) than the RT-SHIV/TC. RT-SHIV/AE was genetically stable in Chinese rhesus macaque. The new chimeric RT-SHIV/AE may be a valuable tool for evaluating the efficacy of the rt-based antiviral drugs against the subtype CRF01_AE HIV-1.

  12. Harvesting rice's dispensable genome.

    PubMed

    Wing, Rod A

    2015-01-01

    A rapid and cost-effective approach has been developed to harvest and map the dispensable genome, that is, population-level natural sequence variation within a species that is not present in static genome assemblies. PMID:26429765

  13. Genomic Data Commons launches

    Cancer.gov

    The Genomic Data Commons (GDC), a unified data system that promotes sharing of genomic and clinical data between researchers, launched today with a visit from Vice President Joe Biden to the operations center at the University of Chicago.

  14. GENOMICS AND ENVIRONMENTAL RESEARCH

    EPA Science Inventory

    The impact of recently developed and emerging genomics technologies on environmental sciences has significant implications for human and ecological risk assessment issues. The linkage of data generated from genomics, transcriptomics, proteomics, metabalomics, and ecology can be ...

  15. Advanced Exploration Systems (AES) Logistics Reduction and Repurposing Project: Advanced Clothing Ground Study Final Report

    NASA Technical Reports Server (NTRS)

    Byrne, Vicky; Orndoff, Evelyne; Poritz, Darwin; Schlesinger, Thilini

    2013-01-01

    All human space missions require significant logistical mass and volume that will become an excessive burden for long duration missions beyond low Earth orbit. The goal of the Advanced Exploration Systems (AES) Logistics Reduction & Repurposing (LRR) project is to bring new ideas and technologies that will enable human presence in farther regions of space. The LRR project has five tasks: 1) Advanced Clothing System (ACS) to reduce clothing mass and volume, 2) Logistics to Living (L2L) to repurpose existing cargo, 3) Heat Melt Compactor (HMC) to reprocess materials in space, 4) Trash to Gas (TTG) to extract useful gases from trash, and 5) Systems Engineering and Integration (SE&I) to integrate these logistical components. The current International Space Station (ISS) crew wardrobe has already evolved not only to reduce some of the logistical burden but also to address crew preference. The ACS task is to find ways to further reduce this logistical burden while examining human response to different types of clothes. The ACS task has been broken into a series of studies on length of wear of various garments: 1) three small studies conducted through other NASA projects (MMSEV, DSH, HI-SEAS) focusing on length of wear of garments treated with an antimicrobial finish; 2) a ground study, which is the subject of this report, addressing both length of wear and subject perception of various types of garments worn during aerobic exercise; and 3) an ISS study replicating the ground study, and including every day clothing to collect information on perception in reduced gravity in which humans experience physiological changes. The goal of the ground study is first to measure how long people can wear the same exercise garment, depending on the type of fabric and the presence of antimicrobial treatment, and second to learn why. Human factors considerations included in the study consist of the Institutional Review Board approval, test protocol and participants' training, and a web

  16. Exploiting the genome

    SciTech Connect

    Block, S.; Cornwall, J.; Dyson, F.; Koonin, S.; Lewis, N.; Schwitters, R.

    1998-09-11

    In 1997, JASON conducted a DOE-sponsored study of the human genome project with special emphasis on the areas of technology, quality assurance and quality control, and informatics. The present study has two aims: first, to update the 1997 Report in light of recent developments in genome sequencing technology, and second, to consider possible roles for the DOE in the ''post-genomic" era, following acquisition of the complete human genome sequence.

  17. Genome-wide association for grain morphology in synthetic hexaploid wheats using digital imaging analysis

    PubMed Central

    2014-01-01

    Background Grain size and shape greatly influence grain weight which ultimately enhances grain yield in wheat. Digital imaging (DI) based phenomic characterization can capture the three dimensional variation in grain size and shape than has hitherto been possible. In this study, we report the results from using digital imaging of grain size and shape to understand the relationship among different components of this trait, their contribution to enhance grain weight, and to identify genomic regions (QTLs) controlling grain morphology using genome wide association mapping with high density diversity array technology (DArT) and allele-specific markers. Results Significant positive correlations were observed between grain weight and grain size measurements such as grain length (r = 0.43), width, thickness (r = 0.64) and factor from density (FFD) (r = 0.69). A total of 231 synthetic hexaploid wheats (SHWs) were grouped into five different sub-clusters by Bayesian structure analysis using unlinked DArT markers. Linkage disequilibrium (LD) decay was observed among DArT loci > 10 cM distance and approximately 28% marker pairs were in significant LD. In total, 197 loci over 60 chromosomal regions and 79 loci over 31 chromosomal regions were associated with grain morphology by genome wide analysis using general linear model (GLM) and mixed linear model (MLM) approaches, respectively. They were mainly distributed on homoeologous group 2, 3, 6 and 7 chromosomes. Twenty eight marker-trait associations (MTAs) on the D genome chromosomes 2D, 3D and 6D may carry novel alleles with potential to enhance grain weight due to the use of untapped wild accessions of Aegilops tauschii. Statistical simulations showed that favorable alleles for thousand kernel weight (TKW), grain length, width and thickness have additive genetic effects. Allelic variations for known genes controlling grain size and weight, viz. TaCwi-2A, TaSus-2B, TaCKX6-3D and TaGw2-6A, were also associated

  18. Evolution of new disease specificity at a simple resistance locus in a crop-weed complex: reconstitution of the Lr21 gene in wheat.

    PubMed

    Huang, Li; Brooks, Steven; Li, Wanlong; Fellers, John; Nelson, James C; Gill, Bikram

    2009-06-01

    The wheat leaf-rust resistance gene Lr21 was first identified in an Iranian accession of goatgrass, Aegilops tauschii Coss., the D-genome donor of hexaploid bread wheat, and was introgressed into modern wheat cultivars by breeding. To elucidate the origin of the gene, we analyzed sequences of Lr21 and lr21 alleles from 24 wheat cultivars and 25 accessions of Ae. tauschii collected along the Caspian Sea in Iran and Azerbaijan. Three basic nonfunctional lr21 haplotypes, H1, H2, and H3, were identified. Lr21 was found to be a chimera of H1 and H2, which were found only in wheat. We attempted to reconstitute a functional Lr21 allele by crossing the cultivars Fielder (H1) and Wichita (H2). Rust inoculation of 5876 F(2) progeny revealed a single resistant plant that proved to carry the H1H2 haplotype, a result attributed to intragenic recombination. These findings reflect how plants balance the penalty and the necessity of a resistance gene and suggest that plants can reuse "dead" alleles to generate new disease-resistance specificity, leading to a "death-recycle" model of plant-resistance gene evolution at simple loci. We suggest that selection pressure in crop-weed complexes contributes to this process.

  19. mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat[W][OPEN

    PubMed Central

    Li, Aili; Liu, Dengcai; Wu, Jun; Zhao, Xubo; Hao, Ming; Geng, Shuaifeng; Yan, Jun; Jiang, Xiaoxue; Zhang, Lianquan; Wu, Junyan; Yin, Lingjie; Zhang, Rongzhi; Wu, Liang; Zheng, Youliang; Mao, Long

    2014-01-01

    Nascent allohexaploid wheat may represent the initial genetic state of common wheat (Triticum aestivum), which arose as a hybrid between Triticum turgidum (AABB) and Aegilops tauschii (DD) and by chromosome doubling and outcompeted its parents in growth vigor and adaptability. To better understand the molecular basis for this success, we performed mRNA and small RNA transcriptome analyses in nascent allohexaploid wheat and its following generations, their progenitors, and the natural allohexaploid cultivar Chinese Spring, with the assistance of recently published A and D genome sequences. We found that nonadditively expressed protein-coding genes were rare but relevant to growth vigor. Moreover, a high proportion of protein-coding genes exhibited parental expression level dominance, with genes for which the total homoeolog expression level in the progeny was similar to that in T. turgidum potentially participating in development and those with similar expression to that in Ae. tauschii involved in adaptation. In addition, a high proportion of microRNAs showed nonadditive expression upon polyploidization, potentially leading to differential expression of important target genes. Furthermore, increased small interfering RNA density was observed for transposable element–associated D homoeologs in the allohexaploid progeny, which may account for biased repression of D homoeologs. Together, our data provide insights into small RNA–mediated dynamic homoeolog regulation mechanisms that may contribute to heterosis in nascent hexaploid wheat. PMID:24838975

  20. HIV gp120 H375 Is Unique to HIV-1 Subtype CRF01_AE and Confers Strong Resistance to the Entry Inhibitor BMS-599793, a Candidate Microbicide Drug

    PubMed Central

    Schader, Susan M.; Colby-Germinario, Susan P.; Quashie, Peter K.; Oliveira, Maureen; Ibanescu, Ruxandra-Ilinca; Moisi, Daniela; Mespléde, Thibault

    2012-01-01

    BMS-599793 is a small molecule entry inhibitor that binds to human immunodeficiency virus type 1 (HIV-1) gp120, resulting in the inhibition of CD4-dependent entry into cells. Since BMS-599793 is currently considered a candidate microbicide drug, we evaluated its efficacy against a number of primary patient HIV isolates from different subtypes and circulating recombinant forms (CRFs) and showed that activity varied between ∼3 ρM and 7 μM at 50% effective concentrations (EC50s). Interestingly, CRF01_AE HIV-1 isolates consistently demonstrated natural resistance against this compound. Genotypic analysis of >1,600 sequences (Los Alamos HIV sequence database) indicated that a single amino acid polymorphism in Env, H375, may account for the observed BMS-599793 resistance in CRF01_AE HIV-1. Results of site-directed mutagenesis experiments confirmed this hypothesis, and in silico drug docking simulations identified a drug resistance mechanism at the molecular level. In addition, CRF01_AE viruses were shown to be resistant to multiple broadly neutralizing monoclonal antibodies. Thus, our results not only provide insight into how Env polymorphisms may contribute to entry inhibitor resistance but also may help to elucidate how HIV can evade some broadly neutralizing antibodies. Furthermore, the high frequency of H375 in CRF01_AE HIV-1, and its apparent nonoccurrence in other subtypes, could serve as a means for rapid identification of CRF01_AE infections. PMID:22615295

  1. Synthesis and structural characterization of the ternary Zintl phases AE{sub 3}Al{sub 2}Pn{sub 4} and AE{sub 3}Ga{sub 2}Pn{sub 4} (AE=Ca, Sr, Ba, Eu; Pn=P, As)

    SciTech Connect

    He, Hua; Tyson, Chauntae; Saito, Maia; Bobev, Svilen

    2012-04-15

    Ten new ternary phosphides and arsenides with empirical formulae AE{sub 3}Al{sub 2}Pn{sub 4} and AE{sub 3}Ga{sub 2}Pn{sub 4} (AE=Ca, Sr, Ba, Eu; Pn=P, As) have been synthesized using molten Ga, Al, and Pb fluxes. They have been structurally characterized by single-crystal and powder X-ray diffraction to form with two different structures-Ca{sub 3}Al{sub 2}P{sub 4}, Sr{sub 3}Al{sub 2}As{sub 4}, Eu{sub 3}Al{sub 2}P{sub 4}, Eu{sub 3}Al{sub 2}As{sub 4}, Ca{sub 3}Ga{sub 2}P{sub 4}, Sr{sub 3}Ga{sub 2}P{sub 4}, Sr{sub 3}Ga{sub 2}As{sub 4}, and Eu{sub 3}Ga{sub 2}As{sub 4} crystallize with the Ca{sub 3}Al{sub 2}As{sub 4} structure type (space group C2/c, Z=4); Ba{sub 3}Al{sub 2}P{sub 4} and Ba{sub 3}Al{sub 2}As{sub 4} adopt the Na{sub 3}Fe{sub 2}S{sub 4} structure type (space group Pnma, Z=4). The polyanions in both structures are made up of TrPn{sub 4} tetrahedra, which share common corners and edges to form {sup 2}{sub {infinity}}[TrPn{sub 2}]{sub 3-} layers in the phases with the Ca{sub 3}Al{sub 2}As{sub 4} structure, and {sup 1}{sub {infinity}}[TrPn{sub 2}]{sub 3-} chains in Ba{sub 3}Al{sub 2}P{sub 4} and Ba{sub 3}Al{sub 2}As{sub 4} with the Na{sub 3}Fe{sub 2}S{sub 4} structure type. The valence electron count for all of these compounds follows the Zintl-Klemm rules. Electronic band structure calculations confirm them to be semiconductors. - Graphical abstract: AE{sub 3}Al{sub 2}Pn{sub 4} and AE{sub 3}Ga{sub 2}Pn{sub 4} (AE=Ca, Sr, Ba, Eu; Pn=P, As) crystallize in two different structures-Ca{sub 3}Al{sub 2}P{sub 4}, Sr{sub 3}Al{sub 2}As{sub 4}, Eu{sub 3}Al{sub 2}P{sub 4}, Eu{sub 3}Al{sub 2}As{sub 4}, Ca{sub 3}Ga{sub 2}P{sub 4}, Sr{sub 3}Ga{sub 2}P{sub 4}, Sr{sub 3}Ga{sub 2}As{sub 4}, and Eu{sub 3}Ga{sub 2}As{sub 4}, are isotypic with the previously reported Ca{sub 3}Al{sub 2}As{sub 4} (space group C2/c (No. 15)), while Ba{sub 3}Al{sub 2}P{sub 4} and Ba{sub 3}Al{sub 2}As{sub 4} adopt a different structure known for Na{sub 3}Fe{sub 2}S{sub 4} (space group Pnma (No. 62

  2. Cluster Chemistry in Electron-Poor Ae-Pt-Cd Systems (Ae=Ca, Sr, Ba): (Sr,Ba)Pt2Cd4, Ca6Pt8Cd16, and Its Known Antitype Er6Pd16Sb8

    SciTech Connect

    Samal, Saroj L.; Gulo, Fakhili; Corbett, John D.

    2013-02-18

    Three new ternary polar intermetallic compounds, cubic Ca6Pt8Cd16, and tetragonal (Sr, Ba)Pt2Cd4 have been discovered during explorations of the Ae–Pt–Cd systems. Cubic Ca6Pt8Cd16 (Fm-3m, Z = 4, a = 13.513(1) Å) contains a 3D array of separate Cd8 tetrahedral stars (TS) that are both face capped along the axes and diagonally bridged by Pt atoms to generate the 3D anionic network Cd8[Pt(1)]6/2[Pt(2)]4/8. The complementary cationic surface of the cell consists of a face-centered cube of Pt(3)@Ca6 octahedra. This structure is an ordered ternary variant of Sc11Ir4 (Sc6Ir8Sc16), a stuffed version of the close relative Na6Au7Cd16, and a network inverse of the recent Er6Sb8Pd16 (compare Ca6Pt8Cd16). The three groups of elements each occur in only one structural version. The new AePt2Cd4, Ae = Sr, Ba, are tetragonal (P42/mnm,Z = 2, a ≈ 8.30 Å, c ≈ 4.47 Å) and contain chains of edge-sharing Cd4 tetrahedra along c that are bridged by four-bonded Ba/Sr. LMTO-ASA and ICOHP calculation results and comparisons show that the major bonding (Hamilton) populations in Ca6Pt8Cd16 and Er6Sb8Pd16 come from polar Pt–Cd and Pd–Sb interactions, that Pt exhibits larger relativistic contributions than Pd, that characteristic size and orbital differences are most evident for Sb 5s, Pt8, and Pd16, and that some terms remain incomparable, Ca–Cd versus Er–Pd.

  3. Phase-Space Density Analyses of the AE-8 Trapped Electron and the AP-8 Trapped Proton Model Environments

    SciTech Connect

    T.E. Cayton

    2005-08-12

    The AE-8 trapped electron and the AP-8 trapped proton models are used to examine the L-shell variation of phase-space densities for sets of transverse (or 1st) invariants, {mu}, and geometrical invariants, K (related to the first two adiabatic invariants). The motivation for this study is twofold: first, to discover the functional dependence of the phase-space density upon the invariants; and, second, to explore the global structure of the radiation belts within this context. Variation due to particle rest mass is considered as well. The overall goal of this work is to provide a framework for analyzing energetic particle data collected by instruments on Global Positioning System (GPS) spacecraft that fly through the most intense region of the radiation belt. For all considered values of {mu} and K, and for 3.5 R{sub E} < L < 6.5 R{sub E}, the AE-8 electron phase-space density increases with increasing L; this trend--the expected one for a population diffusing inward from an external source--continues to L = 7.5 R{sub E} for both small and large values of K but reverses slightly for intermediate values of K. The AP-8 proton phase-space density exhibits {mu}-dependent local minima around L = 5 R{sub E}. Both AE-8 and AP-8 exhibit critical or cutoff values for the invariants beyond which the flux and therefore the phase-space density vanish. For both electrons and protons, these cutoff values vary systematically with magnetic moment and L-shell and are smaller than those estimated for the atmospheric loss cone. For large magnetic moments, for both electrons and protons, the K-dependence of the phase-space density is exponential, with maxima at the magnetic equator (K = 0) and vanishing beyond a cutoff value, K{sub c}. Such features suggest that momentum-dependent trapping boundaries, perhaps drift-type loss cones, serve as boundary conditions for trapped electrons as well as trapped protons.

  4. Phase-Space Density Analysis of the AE-8 Traped Electron and the AP-8 Trapped Proton Model Environments

    SciTech Connect

    Thomas E. Cayton

    2005-08-01

    The AE-8 trapped electron and the AP-8 trapped proton models are used to examine the L-shell variation of phase-space densities for sets of transverse (or 1st) invariants, {mu}, and geometrical invariants, K (related to the first two adiabatic invariants). The motivation for this study is twofold: first, to discover the functional dependence of the phase-space density upon the invariants; and, second, to explore the global structure of the radiation belts within this context. Variation due to particle rest mass is considered as well. The overall goal of this work is to provide a framework for analyzing energetic particle data collected by instruments on Global Positioning System (GPS) spacecraft that fly through the most intense region of the radiation belt. For all considered values of {mu} and K, and for 3.5 R{sub E} < L < 6.5 R{sub E}, the AE-8 electron phase-space density increases with increasing L; this trend--the expected one for a population diffusing inward from an external source--continues to L = 7.5 R{sub E} for both small and large values of K but reverses slightly for intermediate values of K. The AP-8 proton phase-space density exhibits {mu}-dependent local minima around L = 5 R{sub E}. Both AE-8 and AP-8 exhibit critical or cutoff values for the invariants beyond which the flux and therefore the phase-space density vanish. For both electrons and protons, these cutoff values vary systematically with magnetic moment and L-shell and are smaller than those estimated for the atmospheric loss cone. For large magnetic moments, for both electrons and protons, the K-dependence of the phase-space density is exponential, with maxima at the magnetic equator (K = 0) and vanishing beyond a cutoff value, K{sub c}. Such features suggest that momentum-dependent trapping boundaries, perhaps drift-type loss cones, serve as boundary conditions for trapped electrons as well as trapped protons.

  5. The Genomic Medicine Game.

    PubMed

    Tran, Elvis; de Andrés-Galiana, Enrique J; Benitez, Sonia; Martin-Sanchez, Fernando; Lopez-Campos, Guillermo H

    2016-01-01

    With advancements in genomics technology, health care has been improving and new paradigms of medicine such as genomic medicine have evolved. The education of clinicians, researchers and students to face the challenges posed by these new approaches, however, has been often lagging behind. From this the Genomic Medicine Game, an educational tool, was created for the purpose of conceptualizing the key components of Genomic Medicine. A number of phenotype-genotype associations were found through a literature review, which was used to be a base for the concepts the Genomic Medicine Game would focus on. Built in Java, the game was successfully tested with promising results. PMID:27577486

  6. Bacterial Genome Instability

    PubMed Central

    Darmon, Elise

    2014-01-01

    SUMMARY Bacterial genomes are remarkably stable from one generation to the next but are plastic on an evolutionary time scale, substantially shaped by horizontal gene transfer, genome rearrangement, and the activities of mobile DNA elements. This implies the existence of a delicate balance between the maintenance of genome stability and the tolerance of genome instability. In this review, we describe the specialized genetic elements and the endogenous processes that contribute to genome instability. We then discuss the consequences of genome instability at the physiological level, where cells have harnessed instability to mediate phase and antigenic variation, and at the evolutionary level, where horizontal gene transfer has played an important role. Indeed, this ability to share DNA sequences has played a major part in the evolution of life on Earth. The evolutionary plasticity of bacterial genomes, coupled with the vast numbers of bacteria on the planet, substantially limits our ability to control disease. PMID:24600039

  7. Enabling responsible public genomics.

    PubMed

    Conley, John M; Doerr, Adam K; Vorhaus, Daniel B

    2010-01-01

    As scientific understandings of genetics advance, researchers require increasingly rich datasets that combine genomic data from large numbers of individuals with medical and other personal information. Linking individuals' genetic data and personal information precludes anonymity and produces medically significant information--a result not contemplated by the established legal and ethical conventions governing human genomic research. To pursue the next generation of human genomic research and commerce in a responsible fashion, scientists, lawyers, and regulators must address substantial new issues, including researchers' duties with respect to clinically significant data, the challenges to privacy presented by genomic data, the boundary between genomic research and commerce, and the practice of medicine. This Article presents a new model for understanding and addressing these new challenges--a "public genomics" premised on the idea that ethically, legally, and socially responsible genomics research requires openness, not privacy, as its organizing principle. Responsible public genomics combines the data contributed by informed and fully consenting information altruists and the research potential of rich datasets in a genomic commons that is freely and globally available. This Article examines the risks and benefits of this public genomics model in the context of an ambitious genetic research project currently under way--the Personal Genome Project. This Article also (i) demonstrates that large-scale genomic projects are desirable, (ii) evaluates the risks and challenges presented by public genomics research, and (iii) determines that the current legal and regulatory regimes restrict beneficial and responsible scientific inquiry while failing to adequately protect participants. The Article concludes by proposing a modified normative and legal framework that embraces and enables a future of responsible public genomics.

  8. Brackett γ radiation from the inner gaseous accretion disk, magnetosphere, and disk wind region of Herbig AeBe stars

    NASA Astrophysics Data System (ADS)

    Tambovtseva, L. V.; Grinin, V. P.; Weigelt, G.

    2016-05-01

    Various disk and outflow components such as the magnetosphere, the disk wind, the gaseous accretion disk, and other regions may contribute to the hydrogen line emission of young Herbig AeBe stars. Non-LTE modeling was performed to show the influence of the model parameters of each emitting region on the intensity and shape of the Brγ line profile, to present the spatial brightness distribution of each component, and to compare the contribution of each component to the total line emission. The modeling shows that the disk wind is the dominant contributor to the Brγ line rather than the magnetosphere and inner gaseous accretion disk. The contribution of the disk wind region to the Hα line is also considered.

  9. THE FOGGY DISKS SURROUNDING HERBIG Ae STARS: A THEORETICAL STUDY OF THE H{sub 2}O LINE SPECTRA

    SciTech Connect

    Cernicharo, J.; Ceccarelli, C.; Menard, F.; Pinte, C.; Fuente, A.

    2009-10-01

    Water is a key species in many astrophysical environments, but it is particularly important in protoplanetary disks. So far, observations of water in these objects have been scarce, but the situation should soon change thanks to the Herschel satellite. We report here a theoretical study of the water line spectrum of a protoplanetary disk surrounding Ae stars. We show that several lines will be observable with the HIFI instrument onboard the Herschel Space Observatory. We predict that some maser lines also could be observable with ground telescopes and we discuss how the predictions depend not only on the adopted physical and chemical model but also on the set of collisional coefficients used and on the H{sub 2} ortho-to-para ratio through its effect on collisional excitation. This makes the water line observations a powerful, but dangerous-if misused-diagnostic tool.

  10. Simulation and measurement of AES depth profiles; a case study of the C/Ta/C/Si system

    NASA Astrophysics Data System (ADS)

    Zommer, Ludomir; Jablonski, Alexander; Kotis, László; Safran, Gyorgy; Menyhárd, Miklós

    2010-04-01

    A multilayer sample (C (23.3 nm)/Ta (26.5 nm)/C (22.7 nm)/Si substrate) was submitted to AES depth profiling by Ar + ions of energy 1 keV and angles of incidence of 72°, 78°, and 82°. The shapes of the as-measured depth profiles were strongly different emphasizing that the ion-bombardment conditions strongly affects the shapes of measured depth profiles. We simulated the depth profile measured at an angle of incidence of 72° by calculating the backscattering factor, applying attenuation lengths available in the literature, and simulating the ion-bombardment-induced specimen alteration with a TRIDYN simulation and a trial and error method. The good agreement between the calculated and measured depth profiles justified the method applied.

  11. The FUSE satellite is moved to a payload attach fitting in Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    Workers at Hangar AE, Cape Canaveral Air Station, maneuver an overhead crane toward NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite standing between vertical workstands. The crane will lift FUSE to move it onto the Payload Attach Fitting (PAF) in front of it. FUSE is undergoing a functional test of its systems, plus installation of flight batteries and solar arrays. Developed by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md., FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. FUSE is scheduled to be launched May 27 aboard a Boeing Delta II rocket at Launch Complex 17.

  12. The FUSE satellite is moved to a payload attach fitting in Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    Suspended by a crane in Hangar AE, Cape Canaveral Air Station, NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite is lowered onto a circular Payload Attach Fitting (PAF). FUSE is undergoing a functional test of its systems, plus installation of flight batteries and solar arrays. Developed by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md., FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. FUSE is scheduled to be launched May 27 aboard a Boeing Delta II rocket at Launch Complex 17.

  13. The FUSE satellite is moved to a payload attach fitting in Hangar AE, Cape Canaveral Air Station

    NASA Technical Reports Server (NTRS)

    1999-01-01

    While a crane lifts NASA's Far Ultraviolet Spectroscopic Explorer (FUSE) satellite, workers at Hangar AE, Cape Canaveral Air Station, help guide it toward the circular Payload Attach Fitting (PAF) in front of it. FUSE is undergoing a functional test of its systems, plus installation of flight batteries and solar arrays. Developed by The Johns Hopkins University under contract to Goddard Space Flight Center, Greenbelt, Md., FUSE will investigate the origin and evolution of the lightest elements in the universe - hydrogen and deuterium. In addition, the FUSE satellite will examine the forces and process involved in the evolution of the galaxies, stars and planetary systems by investigating light in the far ultraviolet portion of the electromagnetic spectrum. FUSE is scheduled to be launched May 27 aboard a Boeing Delta II rocket at Launch Complex 17.

  14. Supplemental site inspection for Air Force Plant 59, Johnson City, New York, Volume 2: Appendices A-E

    SciTech Connect

    Nashold, B.; Rosenblatt, D.; Tomasko, D.

    1995-08-01

    This summary describes a Supplemental Site Inspection (SSI) conducted by Argonne National Laboratory (ANL) at Air Force Plant 59 (AFP 59) in Johnson City, New York. All required data pertaining to this project were entered by ANL into the Air Force-wide Installation Restoration Program Information System (IRPIMS) computer format and submitted to an appropriate authority. The work was sponsored by the United States Air Force as part of its Installation Restoration Program (IRP). Previous studies had revealed the presence of contaminants at the site and identified several potential contaminant sources. Argonne`s study was conducted to answer questions raised by earlier investigations. This volume consists of appendices A-E, containing field data and data validation.

  15. Behavioral Observations and Sound Recordings of Free-Flight Mating Swarms of Ae. aegypti (Diptera: Culicidae) in Thailand

    PubMed Central

    CATOR, LAUREN J.; ARTHUR, BENJAMIN J.; PONLAWAT, ALONGKOT; HARRINGTON, LAURA C.

    2016-01-01

    Sound plays an important role in the mating behavior of mosquitoes, including Aedes aegypti (L). Males orient to the fundamental wing beat frequency of females, and both sexes actively modulate their flight tone before mating to converge at harmonic frequencies. The majority of studies on mosquito mating acoustics have been conducted in the laboratory using tethered individuals. In this study, we present the first free-flight recording of naturally forming Ae. aegypti swarms in Thailand. We describe mating behaviors and present results on the flight tone frequency and dynamics of wild pairs in free flight. To assess the importance of these behaviors in vector control programs, especially those using genetically modified mosquitoes, it will be critical to use methods, such as those described in this work, to measure mosquito mating behaviors in the field. PMID:21845959

  16. C and N depth profiles of SiCN layers determined with nuclear reaction analyses and AES

    NASA Astrophysics Data System (ADS)

    Link, F.; Baumann, H.; Bethge, K.; Klewe-Nebenius, H.; Bruns, M.

    1998-04-01

    Si 1C xN y layers were prepared by sequential implantation of 40 keV 13C- and 50 keV 15N-ions into c-Si <1 1 1> samples near RT. The carbon and nitrogen depth distributions were measured using the resonant nuclear (p,γ) reactions 15N(p,αγ) 12C at Eres=429 keV and 13C(p,γ) 14N at Eres=1748 keV, respectively. The measured raw data of depth profiling (gamma yield versus the proton beam energy) are converted to concentration-depth profiles of the elements C, N and Si with a common depth scale by using a new developed computer algorithm. These concentration profiles are compared with those obtained with Auger Electron Spectroscopy (AES) and non-Rutherford Backscattering Spectrometry (n-RBS).

  17. Millimeter Source 13 S in R CrA:Observations of a Proto-Herbig Ae System Candidate

    NASA Astrophysics Data System (ADS)

    Saul, M.

    2015-08-01

    Compelled to observe a young, intermediate mass (IM) protostar candidate, we image velocity structure in a variety of molecular lines toward a strong millimeter continuum peak, MMS 13, in the young stellar object cluster R Corona Australis. We report the detection of N2H+ (1-0) and C34S (2-1) corresponding to a filamentary IM core coincident with a site of turbulent flow convergence and Spitzer infrared emission minimum. Several emission features including a central decay of turbulence, kinematic signatures of bulk infall, and strong winds support mass and age estimates in indicating the presence of a proto-Herbig Ae system in the region. Channeling of center velocity flow with turbulence amplification along the rotation axis drives wind generation in the system candidate.

  18. NASA, Navy, and AES/York sea ice concentration comparison of SSM/I algorithms with SAR derived values

    NASA Technical Reports Server (NTRS)

    Jentz, R. R.; Wackerman, C. C.; Shuchman, R. A.; Onstott, R. G.; Gloersen, Per; Cavalieri, Don; Ramseier, Rene; Rubinstein, Irene; Comiso, Joey; Hollinger, James

    1991-01-01

    Previous research studies have focused on producing algorithms for extracting geophysical information from passive microwave data regarding ice floe size, sea ice concentration, open water lead locations, and sea ice extent. These studies have resulted in four separate algorithms for extracting these geophysical parameters. Sea ice concentration estimates generated from each of these algorithms (i.e., NASA/Team, NASA/Comiso, AES/York, and Navy) are compared to ice concentration estimates produced from coincident high-resolution synthetic aperture radar (SAR) data. The SAR concentration estimates are produced from data collected in both the Beaufort Sea and the Greenland Sea in March 1988 and March 1989, respectively. The SAR data are coincident to the passive microwave data generated by the Special Sensor Microwave/Imager (SSM/I).

  19. Penicibrocazines A-E, five new sulfide diketopiperazines from the marine-derived endophytic fungus Penicillium brocae.

    PubMed

    Meng, Ling-Hong; Zhang, Peng; Li, Xiao-Ming; Wang, Bin-Gui

    2015-01-07

    Five new sulfide diketopiperazine derivatives, namely, penicibrocazines A-E (1-5), along with a known congener (6), were isolated and identified from the culture extract of Penicillium brocae MA-231, an endophytic fungus obtained from the fresh tissue of the marine mangrove plant Avicennia marina. The structures of these compounds were elucidated by detailed interpretation of NMR and mass spectroscopic data and the structures of compounds 1 and 3 were confirmed by single-crystal X-ray diffraction analysis. All these compounds were examined for cytotoxic and antimicrobial activities. Compounds 2-6 exhibited antimicrobial activity against some of the tested strains with MIC values ranging from 0.25 to 64 μg/mL.

  20. Study of O/Ni(100) with LEED (low-energy electron diffraction) and AES (auger electron spectroscopy) from chemisorption to oxidation

    SciTech Connect

    Wang, Wen-Di.

    1990-11-16

    The structures formed on the Ni(100) surface during oxygen adsorption, leading to oxidation, are studied with Video-LEED (low-energy electron diffraction) and AES (Auger electron spectroscopy). The temperature- and exposure-dependence in the development of LEED patterns observed during oxidation of Ni(100), at oxidation temperatures of 80 to 400 K, are investigated extensively. Integrated diffraction spot intensities and fractional spot profiles are measured quantitatively and continuously, allowing unambiguous correlation of various surface processes. AES is used to measure the oxidation onset during adsorption and the final relative thickness of the oxide. 48 figs., 79 refs.