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Sample records for aerobic respiration denitrification

  1. Modeling the influence of varying hydraulic conditions on aerobic respiration and denitrification in the hyporheic zone

    NASA Astrophysics Data System (ADS)

    Trauth, N.; Schmidt, C.; Fleckenstein, J. H.

    2013-12-01

    Exchange of water and solutes across the stream-sediment interface is an important control for biogeochemical transformations in the hyporheic zone (HZ) with measurable impacts on nutrient cycling and solute attenuation in fluvial systems. Here we investigate the interplay between turbulent stream flow and HZ flow under various hydraulic conditions applied to two cases: a) three-dimensional generic pool-riffle sequences with different morphological properties, and b) a real mid-stream gravel-bar. Stream flow is simulated by the open source computational fluid dynamics (CFD) software OpenFOAM which provides the hydraulic head distribution at the streambed. It is sequentially coupled to the top of the groundwater model code MIN3P, simulating flow, solute transport, aerobic respiration (AR) and denitrification (DN) in the HZ. Flow in the HZ is directly influenced by the hydraulic head distribution at the streambed surface and the ambient groundwater flow. Three reactive transport scenarios are considered: 1) stream water as the primary source of dissolved oxygen (DO), nitrate (NO3) and dissolved organic carbon (DOC), 2) upwelling groundwater as an additionally source of NO3, and 3) upwelling groundwater as an additional source of DO in various concentrations. Results show an increase in hyporheic exchange flow for increasing stream discharge with a concurrent decrease in residence time. The fraction of circulating stream water through the HZ is in the range of 1x10-5 to 1x10-6 per unit stream length, decreasing with increasing discharge. Ambient groundwater flow in both the up- and downwelling direction diminishes significantly the hyporheic exchange flow and extent. Biogeochemical processes in the HZ are strongly controlled by ambient groundwater flow, even more so than by changes in stream discharge. AR and DN efficiencies of the HZ are significantly reduced by up- and downwelling groundwater and are positively correlated with median residence times. AR occurs in

  2. Influence of Small Scale Permeability Heterogeneity on Aerobic Respiration and Denitrification in the Streambed: A Stochastic Simulation Approach

    NASA Astrophysics Data System (ADS)

    Laube, Gerrit; Fleckenstein, Jan H.; Schmidt, Christian

    2016-04-01

    In streams and rivers, streambed permeability heterogeneity is known to increase hyporheic flux and to decrease hyporheic residence time through preferential flow paths. However, the link between permeability and biogeochemical reactions remains poorly understood. Previous studies have come to contradicting conclusions, likely because of the limited number of heterogeneity scenarios considered. In this study we systematically study the influence of permeability heterogeneity on ripple-induced hyporheic exchange, aerobic respiration and denitrification in the streambed. We simulated and evaluated more than 2000 2D-heterogeneity scenarios by means of Gaussian random fields. The conductivity distributions of those Gaussian fields were transformed to either log-normal or binary distributions with varying variance of hydraulic conductivity in order to investigate both continuous and discrete heterogeneities on a large range of intensities. The results indicate that total aerobic respiration in the domain increases with heterogeneity intensity, expressed as the variance of hydraulic conductivity. In contrast, total denitrification in the domain is minimally influenced by the intensity of heterogeneity, because of the competing effect of increasing solute flux and decreasing reaction time. These results represent the general trends among the entire range of scenarios. The total solute transformation of single realizations revealed strong deviations from these trends whenever special spatial permeability distributions such as clogging layers occurred. The permeability distribution in the uppermost layer of the domain, at the interface between surface water and sediment, was found to strongly influence the extent of deviation from the general trends.

  3. A critical role for the cccA gene product, cytochrome c2, in diverting electrons from aerobic respiration to denitrification in Neisseria gonorrhoeae.

    PubMed

    Hopper, Amanda C; Li, Ying; Cole, Jeffrey A

    2013-06-01

    Neisseria gonorrhoeae is a microaerophile that, when oxygen availability is limited, supplements aerobic respiration with a truncated denitrification pathway, nitrite reduction to nitrous oxide. We demonstrate that the cccA gene of Neisseria gonorrhoeae strain F62 (accession number NG0292) is expressed, but the product, cytochrome c2, accumulates to only low levels. Nevertheless, a cccA mutant reduced nitrite at about half the rate of the parent strain. We previously reported that cytochromes c4 and c5 transfer electrons to cytochrome oxidase cbb3 by two independent pathways and that the CcoP subunit of cytochrome oxidase cbb3 transfers electrons to nitrite. We show that mutants defective in either cytochrome c4 or c5 also reduce nitrite more slowly than the parent. By combining mutations in cccA (Δc2), cycA (Δc4), cycB (Δc5), and ccoP (ccoP-C368A), we demonstrate that cytochrome c2 is required for electron transfer from cytochrome c4 via the third heme group of CcoP to the nitrite reductase, AniA, and that cytochrome c5 transfers electrons to nitrite reductase by an independent pathway. We propose that cytochrome c2 forms a complex with cytochrome oxidase. If so, the redox state of cytochrome c2 might regulate electron transfer to nitrite or oxygen. However, our data are more consistent with a mechanism in which cytochrome c2 and the CcoQ subunit of cytochrome oxidase form alternative complexes that preferentially catalyze nitrite and oxygen reduction, respectively. Comparison with the much simpler electron transfer pathway for nitrite reduction in the meningococcus provides fascinating insights into niche adaptation within the pathogenic neisseriae. PMID:23543713

  4. [Heterotrophic Nitrification and Aerobic Denitrification of the Hypothermia Aerobic Denitrification Bacterium: Arthrobacter arilaitensis].

    PubMed

    He, Teng-xia; Ni, Jiu-pai; Li, Zhen-lun; Sun, Quan; Ye Qing; Xu, Yi

    2016-03-15

    High concentrations of ammonium, nitrate and nitrite nitrogen were employed to clarify the abilities of heterotrophic nitrification and aerobic denitrification of Arthrobacter arilaitensis strain Y-10. Meanwhile, by means of inoculating the strain suspension into the mixed ammonium and nitrate, ammonium and nitrite nitrogen simulated wastewater, we studied the simultaneous nitrification and denitrification ability of Arthrobacter arilaitensis strain Y-10. In addition, cell optical density was assayed in each nitrogen removal process to analyze the relationship of cell growth and nitrogen removal efficiency. The results showed that the hypothermia denitrification strain Arthrobacter arilaitensis Y-10 exhibited high nitrogen removal efficiency during heterotrophic nitrification and aerobic denitrification. The ammonium, nitrate and nitrite removal rates were 65.0%, 100% and 61.2% respectively when strain Y-10 was cultivated for 4 d at 15°C with initial ammonium, nitrate and nitrite nitrogen concentrations of 208.43 mg · L⁻¹, 201.16 mg · L⁻¹ and 194.33 mg · L⁻¹ and initial pH of 7.2. Nitrite nitrogen could only be accumulated in the medium containing nitrate nitrogen during heterotrophic nitrification and aerobic denitrification process. Additionally, the ammonium nitrogen was mainly removed in the inorganic nitrogen mixed synthetic wastewater. In short, Arthrobacter arilaitensis Y-10 could conduct nitrification and denitrification effectively under aerobic condition and the ammonium nitrogen removal rate was more than 80.0% in the inorganic nitrogen mixed synthetic wastewater. PMID:27337904

  5. Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.

    PubMed

    Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A; Graco, Michelle I; Kuypers, Marcel M M

    2015-01-01

    Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein. PMID:26192623

  6. Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.

    PubMed

    Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A; Graco, Michelle I; Kuypers, Marcel M M

    2015-01-01

    Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein.

  7. Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

    PubMed Central

    Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M.; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K.; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A.; Graco, Michelle I.; Kuypers, Marcel M. M.

    2015-01-01

    Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein. PMID:26192623

  8. AEROBIC DENITRIFICATION: IMPLICATIONS FOR NITROGEN FATE MODELING

    EPA Science Inventory

    In the Mississippi, as well as most nitrogen-degraded rivers and streams, NO3- is the dominant N species and therefore understanding its biogeochemical behavior is critical for accurate nitrogen fate modeling. To our knowledge this is the first work to report aerobic denitrificat...

  9. Aerobic Microbial Respiration in Oceanic Oxygen Minimum Zones

    NASA Astrophysics Data System (ADS)

    Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M.; Revsbech, Niels Peter; Schunck, Harald; Loescher, Carolin; Desai, Dhwani K.; LaRoche, Julie; Schmitz-Streit, Ruth; Kuypers, Marcel M. M.

    2014-05-01

    In the oxygen minimum zones (OMZs) of the tropical oceans, sluggish ventilation combined with strong microbial respiration of sinking organic matter results in the depletion of oxygen (O2). When O2 concentrations drop below ~5 µmol/L, organic matter is generally assumed to be respired with nitrate, ultimately leading to the loss of fixed inorganic nitrogen via anammox and denitrification. However, direct measurements of microbial O2 consumption at low O2 levels are - apart from a single experiment conducted in the OMZ off Peru - so far lacking. At the same time, consistently observed active aerobic ammonium and nitrite oxidation at non-detectable O2 concentrations (<1 µmol/L) in all major OMZs, suggests aerobic microorganisms, likely including heterotrophs, to be well adapted to near-anoxic conditions. Consequently, microaerobic (≤5 µmol/L) remineralization of organic matter, and thus release of ammonium, in low- O2 environments might be significantly underestimated at present. Here we present extensive measurements of microbial O2 consumption in OMZ waters, combined with highly sensitive O2 (STOX) measurements and meta-omic functional gene analyses. Short-term incubation experiments with labelled O2 (18-18O2) carried out in the Namibian and Peruvian OMZ, revealed persistent aerobic microbial activity at depths with non-detectable concentrations of O2 (≤50 nmol/L). In accordance, examination of metagenomes and metatranscriptomes from Chilean and Peruvian OMZ waters identified genes encoding for terminal respiratory oxidases with high O2 affinities as well as their expression by diverse microbial communities. Oxygen consumption was particularly enhanced near the upper OMZ boundaries and could mostly (~80%) be assigned to heterotrophic microbial activity. Compared to previously identified anaerobic microbial processes, microaerobic organic matter respiration was the dominant remineralization pathway and source of ammonium (~90%) in the upper Namibian and

  10. Denitrification kinetics in anoxic/aerobic activated sludge systems

    SciTech Connect

    Horne, G.M.

    1998-12-11

    Nitrogen removal needs at municipal wastewater treatment plants (WWTPs) have increased due to greater concerns about eutrophication and increased interest in reuse of treated municipal effluents. Biological processes are the most cost-effective method for nitrogen removal. Biological nitrogen removal is accomplished in two distinctly different processes by the conversion of nitrogen in the wastewater from organic nitrogen and ammonia to nitrate, followed by reduction of the nitrate to nitrogen gas. Nitrate production occurs in an aerobic activated sludge treatment zone during a process called nitrification. The nitrate is then converted through a series of intermediate steps to nitrogen gas in an anoxic zone (an anaerobic condition with nitrate present) during a process called denitrification, effectively removing the nitrogen from the wastewater. Many different WWTP designs have been developed to incorporate these two conditions for nitrogen removal.

  11. Waiting to inhale: HIF-1 modulates aerobic respiration.

    PubMed

    Boutin, Adam T; Johnson, Randall S

    2007-04-01

    The hypoxia-inducible factor HIF-1 is known to promote anaerobic respiration during low oxygen conditions (hypoxia). In this issue, Fukuda et al. (2007) expand the range of HIF-1's functions by showing that it modulates aerobic respiration as well.

  12. The Energetics of Aerobic versus Anaerobic Respiration.

    ERIC Educational Resources Information Center

    Champion, Timothy D.; Schwenz, Richard W.

    1990-01-01

    Background information, laboratory procedures, and a discussion of the results of an experiment designed to investigate the difference in energy gained from the aerobic and anaerobic oxidation of glucose are presented. Sample experimental and calculated data are included. (CW)

  13. Teaching Aerobic Cell Respiration Using the 5Es

    ERIC Educational Resources Information Center

    Patro, Edward T.

    2008-01-01

    The 5E teaching model provides a five step method for teaching science. While the sequence of the model is strictly linear, it does provide opportunities for the teacher to "revisit" prior learning before moving on. The 5E method is described as it relates to the teaching of aerobic cell respiration.

  14. Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration.

    PubMed

    Lopez, Christopher A; Miller, Brittany M; Rivera-Chávez, Fabian; Velazquez, Eric M; Byndloss, Mariana X; Chávez-Arroyo, Alfredo; Lokken, Kristen L; Tsolis, Renée M; Winter, Sebastian E; Bäumler, Andreas J

    2016-09-16

    Citrobacter rodentium uses a type III secretion system (T3SS) to induce colonic crypt hyperplasia in mice, thereby gaining an edge during its competition with the gut microbiota through an unknown mechanism. Here, we show that by triggering colonic crypt hyperplasia, the C. rodentium T3SS induced an excessive expansion of undifferentiated Ki67-positive epithelial cells, which increased oxygenation of the mucosal surface and drove an aerobic C. rodentium expansion in the colon. Treatment of mice with the γ-secretase inhibitor dibenzazepine to diminish Notch-driven colonic crypt hyperplasia curtailed the fitness advantage conferred by aerobic respiration during C. rodentium infection. We conclude that C. rodentium uses its T3SS to induce histopathological lesions that generate an intestinal microenvironment in which growth of the pathogen is fueled by aerobic respiration. PMID:27634526

  15. Denitrification and nitric oxide reduction in an aerobic toluene-treating biofilter

    SciTech Connect

    Plessis, C.A. du; Kinney, K.A.; Schroeder, E.D.; Chang, D.P.Y.; Scow, K.M.

    1998-05-20

    The presence of significant denitrification activity in an aerobic toluene-treating biofilter was demonstrated under batch and flow-through conditions. N{sub 2}O concentrations of 9.2 ppm{sub v} were produced by denitrifying bacteria in the presence of 15% acetylene, in a flow-through system with a bulk gas phase O{sub 2} concentration of >17%. The carbon source for denitrification was not toluene but a byproduct or metabolite of toluene catabolism. Denitrification conditions were successfully used for the reduction of 60 ppm{sub v} nitric oxide to 15 ppm{sub v} at a flow rate of 3 L/min (EBRT of 3 min) in a fully aerated, 17%/v/v O{sub 2} (superficially aerobic) biofilter. Higher NO removal efficiency (97%) was obtained by increasing the toluene supply to the biofilter.

  16. Chemotactic Motility of Pseudomonas fluorescens F113 under Aerobic and Denitrification Conditions

    PubMed Central

    Redondo-Nieto, Miguel; Rivilla, Rafael; Martín, Marta

    2015-01-01

    The sequence of the genome of Pseudomonas fluorescens F113 has shown the presence of multiple traits relevant for rhizosphere colonization and plant growth promotion. Among these traits are denitrification and chemotactic motility. Besides aerobic growth, F113 is able to grow anaerobically using nitrate and nitrite as final electron acceptors. F113 is able to perform swimming motility under aerobic conditions and under anaerobic conditions when nitrate is used as the electron acceptor. However, nitrite can not support swimming motility. Regulation of swimming motility is similar under aerobic and anaerobic conditions, since mutants that are hypermotile under aerobic conditions, such as gacS, sadB, kinB, algU and wspR, are also hypermotile under anaerobic conditions. However, chemotactic behavior is different under aerobic and denitrification conditions. Unlike most pseudomonads, the F113 genome encode three complete chemotaxis systems, Che1, Che2 and Che3. Mutations in each of the cheA genes of the three Che systems has shown that the three systems are functional and independent. Mutation of the cheA1 gene completely abolished swimming motility both under aerobic and denitrification conditions. Mutation of the cheA2 gene, showed only a decrease in swimming motility under both conditions, indicating that this system is not essential for chemotactic motility but is necessary for optimal motility. Mutation of the cheA3 gene abolished motility under denitrification conditions but only produced a decrease in motility under aerobic conditions. The three Che systems proved to be implicated in competitive rhizosphere colonization, being the cheA1 mutant the most affected. PMID:26161531

  17. [Identification and denitrification characteristics of a psychrotolerant facultative basophilic aerobic denitrifier].

    PubMed

    Wang, Zhao-Yang; Chen, Guo-Yao; Jiang, Ke; Xu, Pei-Ya

    2014-06-01

    An aerobic denitrifier was isolated from the activated sludge of landfill leachate through traditional microbiological methods. Based on its morphological feature, physiological and biochemical properties, and 16S rDNA sequence analysis, this strain was identified as Pseudomonas sp., named as GL19 with an accession number of KC710974 in GenBank. Its aerobic denitrification characteristics and nitrification function were studied to show that the factors including carbon source, C/N, pH and cultivation temperature were important for denitrification. The optimized condition for aerobic denitrification was as follows: sodium citrate as the carbon resource, C/N no less than 15, pH of 6-10, DO of 4.8-7.7 mg x L(-1), culture temperature of 15-34 degrees C and the initial nitrate nitrogen of 140 mg x L(-1). Combining these conditions, the removal rate of nitrate nitrogen and average removal rate of TN reached 100% and 96.5%, respectively, without the accumulation of nitrite nitrogen. The strain had the capability to utilize nitrite nitrogen or ammonia nitrogen to achieve high nitrogen removal efficiency: the nitrite nitrogen removal rate reached 100% in 20 hours with an initial nitrite nitrogen of 140 mg x L(-1); the ammonia nitrogen was efficiently removed from 280 mg x L(-1) to 3.11 mg x L(-1) in 28 hours with the removal rate of up to 98.9%. These results suggested that strain GL19 with the function of cold resistance and highly effective aerobic denitrification could achieve simultaneous nitrification and denitrification. Hence, GL19 could have high potential in practical wastewater treatment in winter of south area. PMID:25158516

  18. Large-scale controls on potential respiration and denitrification in riverine floodplains.

    PubMed

    Welti, Nina; Bondar-Kunze, Elisabeth; Singer, Gabriel; Tritthart, Michael; Zechmeister-Boltenstern, Sophie; Hein, Thomas; Pinay, Gilles

    2012-05-01

    Restoration measures of deteriorated river ecosystems generally aim at increasing the spatial heterogeneity and connectivity of these systems in order to increase biodiversity and ecosystem stability. While this is believed to benefit overall ecological integrity, consequences of such restoration projects on biogeochemical processes per se (i.e. ecosystem functioning) in fluvial systems are rarely considered. We address these issues by evaluating the characteristics of surface water connection between side arms and the main river channel in a former braided river section and the role and degree of connectivity (i.e. duration of surface water connection) on the sediment biogeochemistry. We hypothesized that potential respiration and denitrification would be controlled by the degree of hydrological connectivity, which was increased after floodplain restoration. We measured potential microbial respiration (SIR) and denitrification (DEA) and compared a degraded floodplain section of the Danube River with a reconnected and restored floodplain in the same river section. Re-establishing surface water connection altered the controls on sediment microbial respiration and denitrification ultimately impacting potential microbial activities. Meta-variables were created to characterize the effects of hydrology, morphology, and the available carbon and nutrient pools on potential microbial processing. Mantel statistics and path analysis were performed and demonstrate a hierarchy where the effects of hydrology on the available substrates and microbial processing are mediated by the morphology of the floodplain. In addition, these processes are highest in the least connected sites. Surface water connection, mediated by morphology regulates the potential denitrification rate and the ratio of N2O to N2 emissions, demonstrating the effects of restoration in floodplain systems.

  19. Large-scale controls on potential respiration and denitrification in riverine floodplains

    PubMed Central

    Welti, Nina; Bondar-Kunze, Elisabeth; Singer, Gabriel; Tritthart, Michael; Zechmeister-Boltenstern, Sophie; Hein, Thomas; Pinay, Gilles

    2012-01-01

    Restoration measures of deteriorated river ecosystems generally aim at increasing the spatial heterogeneity and connectivity of these systems in order to increase biodiversity and ecosystem stability. While this is believed to benefit overall ecological integrity, consequences of such restoration projects on biogeochemical processes per se (i.e. ecosystem functioning) in fluvial systems are rarely considered. We address these issues by evaluating the characteristics of surface water connection between side arms and the main river channel in a former braided river section and the role and degree of connectivity (i.e. duration of surface water connection) on the sediment biogeochemistry. We hypothesized that potential respiration and denitrification would be controlled by the degree of hydrological connectivity, which was increased after floodplain restoration. We measured potential microbial respiration (SIR) and denitrification (DEA) and compared a degraded floodplain section of the Danube River with a reconnected and restored floodplain in the same river section. Re-establishing surface water connection altered the controls on sediment microbial respiration and denitrification ultimately impacting potential microbial activities. Meta-variables were created to characterize the effects of hydrology, morphology, and the available carbon and nutrient pools on potential microbial processing. Mantel statistics and path analysis were performed and demonstrate a hierarchy where the effects of hydrology on the available substrates and microbial processing are mediated by the morphology of the floodplain. In addition, these processes are highest in the least connected sites. Surface water connection, mediated by morphology regulates the potential denitrification rate and the ratio of N2O to N2 emissions, demonstrating the effects of restoration in floodplain systems. PMID:23565037

  20. [Characteristics of Nitrogen Removal by a Heterotrophic Nitrification-Aerobic Denitrification Bacterium YL].

    PubMed

    Liang, Xian; Ren, Yong-xiang; Yang, Lei; Zhao, Si-qi; Xia, Zhi-hong

    2015-05-01

    Traditional process of autotrophic nitrification-anaerobic denitrification usually has problems of long procedure and low efficiency. To overcome these problems, a heterotrophic nitrification-aerobic denitrification bacterium YL was isolated from a domesticated mature SBR reactor with efficient simultaneous nitrification and denitrification ability, and was identified as Pseudomonas aeruginosa YL. Meanwhile, the characteristics of the nitrogen removal of strain YL was investigated through single-factor experiments and an orthogonal experiment. The results showed that the preferred conditions were: succinate as the carbon source, C/N ratio of 10, pH of 7.0, temperature of 30°C, and the shaking speed of 160-200 r · min(-1), while the removal rate of ammonia oxidation was 5. 05 mg · (g · h)(-1), the transformation rate of TOC was 45.95 mg · (g · h)(-1), and the removal rates of nitrogen and TOC were 100% and 90.8%, respectively. Nitrite, nitrate and hydroxylamine could also be metabolized by strain YL, and the removal rates were 92.7%, 93.6% and 94.8%, respectively. The most important influencing factor on aerobic denitrification of strain YL was C/N ratio. Under the optimal conditions (C/N = 10, T = 30°C , r = 200 r · min(-1), pH = 7), the removal rates of nitrate and total nitrogen were 94.6% and 76.3%, respectively. Hence, strain YL could remove nitrogen by heterotrophic nitrification-aerobic denitrification independently, quickly, and effectively.

  1. Characteristics of nitrate removal in a bio-ceramsite reactor by aerobic denitrification.

    PubMed

    Chen, Dan; Yang, Kai; Wang, Hongyu; Lv, Bin; Ma, Fang

    2015-01-01

    A newly aerobic denitrifying bacterial strain, Pseudomonas sp. X31, which was isolated from activated sludge, was added to a newly developed aerobic denitrification bio-ceramsite reactor as an inoculum to treat nitrate-polluted water and the denitrification activities of this system under different air-water ratio, hydraulic loading, and C/N (carbon/nitrogen ratio) conditions were investigated. It demonstrated excellent capability for denitrification in the bio-ceramsite reactor at air-water ratios that varied from 6.5:1 to 8:1. The optimal hydraulic loading for the bio-ceramsite reactor was 0.75 m/h with the optimum denitrification efficiency of 95.18%. The optimal C/N was 4.5:1 with a maximum nitrate removal efficiency of 98.48%. COD could be completely removed under the most appropriate condition (air-water ratio 6.5:1-8:1, hydraulic loading 0.75 m/h, and C/N 4.5:1). The quantity of the biomass in the reactor decreased along with flow, which was in accordance with the variety of the available substrate concentrations in the water. However, the biofilm activity was not proportional to the biomass in the bio-ceramsite reactor, but increased with the quantity of the biomass up to a peak value and then decreased.

  2. The characteristics of a novel heterotrophic nitrification-aerobic denitrification bacterium, Bacillus methylotrophicus strain L7.

    PubMed

    Zhang, Qing-Ling; Liu, Ying; Ai, Guo-Min; Miao, Li-Li; Zheng, Hai-Yan; Liu, Zhi-Pei

    2012-03-01

    Bacillus methylotrophicus strain L7, exhibited efficient heterotrophic nitrification-aerobic denitrification ability, with maximum NH(4)(+)-N and NO(2)(-)-N removal rate of 51.58 mg/L/d and 5.81 mg/L/d, respectively. Strain L7 showed different gaseous emitting patterns from those strains ever described. When (15)NH(4)Cl, or Na(15)NO(2), or K(15)NO(3) was used, results of GC-MS indicated that N(2)O was emitted as the intermediate of heterotrophic nitrification or aerobic denitrification, while GC-IRMS results showed that N(2) was produced as end product when nitrite was used. Single factor experiments suggested that the optimal conditions for heterotrophic nitrification were sodium succinate as carbon source, C/N 6, pH 7-8, 0 g/L NaCl, 37 °C and a wide range of NH(4)(+)-N from 80 to 1000 mg/L. Orthogonal tests showed that the optimal conditions for aerobic denitrification were C/N 20, pH 7-8, 10 g/L NaCl and DO 4.82 mg/L (shaking speed 50 r/min) when nitrite was served as substrate.

  3. Ammonium removal by Agrobacterium sp. LAD9 capable of heterotrophic nitrification-aerobic denitrification.

    PubMed

    Chen, Qian; Ni, Jinren

    2012-05-01

    Characteristics of ammonium removal by a newly isolated heterotrophic nitrification-aerobic denitrification bacterium Agrobacterium sp. LAD9 were systematically investigated. Succinate and acetate were found to be the most favorable carbon sources for LAD9. Response surface methodology (RSM) analysis demonstrated that maximum removal of ammonium occurred under the conditions with an initial pH of 8.46, C/N ratio of 8.28, temperature of 27.9°C and shaking speed of 150rpm, where temperature and shaking speed produced the largest effect. Further nitrogen balance analysis revealed that 50.1% of nitrogen was removed as gas products and 40.8% was converted to the biomass. Moreover, the occurrence of aerobic denitrification was evidenced by the utilization of nitrite and nitrate as nitrogen sources, and the successful amplifications of membrane bound nitrate reductase and cytochrome cd(1) nitrite reductase genes from strain LAD9. Thus, the nitrogen removal in strain LAD9 was speculated to comply with the mechanism of heterotrophic nitrification coupled with aerobic denitrification (NH(4)(+)-NH(2)OH-NO(2)(-)-N(2)O-N(2)), in which also accompanied with the mutual transformation of nitrite and nitrate. The findings can help in applying appropriate controls over operational parameters in systems involving the use of this kind of strain.

  4. Stimulating in situ denitrification in an aerobic, highly permeable municipal drinking water aquifer.

    PubMed

    Critchley, K; Rudolph, D L; Devlin, J F; Schillig, P C

    2014-12-15

    A preliminary trial of a cross-injection system (CIS) was designed to stimulate in situ denitrification in an aquifer servicing an urban community in southern Ontario. It was hypothesized that this remedial strategy could be used to reduce groundwater nitrate in the aquifer such that it could remain in use as a municipal supply until the beneficial effects of local reduced nutrient loadings lead to long-term water quality improvement at the wellfield. The CIS application involved injecting a carbon source (acetate) into the subsurface using an injection-extraction well pair positioned perpendicular to the regional flow direction, up-gradient of the water supply wells, with the objective of stimulating native denitrifying bacteria. The pilot remedial strategy was targeted in a high nitrate flux zone within an aerobic and heterogeneous section of the glacial sand and gravel aquifer. Acetate injections were performed at intervals ranging from daily to bi-daily. The carbon additions led to general declines in dissolved oxygen concentrations; decreases in nitrate concentration were localized in aquifer layers where velocities were estimated to be less than 0.5m/day. NO3-(15)N and NO3-(18)O isotope data indicated the nitrate losses were due to denitrification. Relatively little nitrate was removed from groundwater in the more permeable strata, where velocities were estimated to be on the order of 18 m/day or greater. Overall, about 11 percent of the nitrate mass passing through the treatment zone was removed. This work demonstrates that stimulating in situ denitrification in an aerobic, highly conductive aquifer is challenging but achievable. Further work is needed to increase rates of denitrification in the most permeable units of the aquifer.

  5. Stimulating in situ denitrification in an aerobic, highly permeable municipal drinking water aquifer

    NASA Astrophysics Data System (ADS)

    Critchley, K.; Rudolph, D. L.; Devlin, J. F.; Schillig, P. C.

    2014-12-01

    A preliminary trial of a cross-injection system (CIS) was designed to stimulate in situ denitrification in an aquifer servicing an urban community in southern Ontario. It was hypothesized that this remedial strategy could be used to reduce groundwater nitrate in the aquifer such that it could remain in use as a municipal supply until the beneficial effects of local reduced nutrient loadings lead to long-term water quality improvement at the wellfield. The CIS application involved injecting a carbon source (acetate) into the subsurface using an injection-extraction well pair positioned perpendicular to the regional flow direction, up-gradient of the water supply wells, with the objective of stimulating native denitrifying bacteria. The pilot remedial strategy was targeted in a high nitrate flux zone within an aerobic and heterogeneous section of the glacial sand and gravel aquifer. Acetate injections were performed at intervals ranging from daily to bi-daily. The carbon additions led to general declines in dissolved oxygen concentrations; decreases in nitrate concentration were localized in aquifer layers where velocities were estimated to be less than 0.5 m/day. NO3-15N and NO3-18O isotope data indicated the nitrate losses were due to denitrification. Relatively little nitrate was removed from groundwater in the more permeable strata, where velocities were estimated to be on the order of 18 m/day or greater. Overall, about 11 percent of the nitrate mass passing through the treatment zone was removed. This work demonstrates that stimulating in situ denitrification in an aerobic, highly conductive aquifer is challenging but achievable. Further work is needed to increase rates of denitrification in the most permeable units of the aquifer.

  6. Internal recycle to improve denitrification in a step feed anoxic/aerobic activated sludge system.

    PubMed

    Boyle, C A; McKenzie, C J; Morgan, S

    2009-01-01

    During periods of low load (weekends and holidays) the Mangere wastewater treatment plant effluent has breached the summer consent conditions for total nitrogen. The purpose of this research was to determine if an internal recycle would improve nitrogen removal in the anoxic/aerobic activated sludge reactors sufficient to meet the summer resource consent standard. The recycle returned nitrate rich mixed liquor from the downstream aerobic zone back to the initial anoxic zone, thus potentially improving denitrification. A full scale trial showed that installation of the internal recycle on each RC would have satisfied the resource consent for total nitrogen in most cases over the three summer resource consent periods since the upgrade. However, further modifications of the internal recycle would be required to ensure that consent conditions were satisfied at all times and to improve the consistency of the results.

  7. [Bioaugmentation for shortcut nitrification in SBR treating for sewage containing sea water by nitrification-aerobic denitrification bacteria].

    PubMed

    Qu, Yang; Zhang, Pei-Yu; Yu, De-Shuang; Guo, Sha-Sha; Yang, Rui-Xia

    2010-10-01

    The feasibility of heterotrophic nitrification-aerobic denitrification bacteria applied in shortcut nitrification system was studied. Four heterotrophic nitrification-aerobic denitrification strains mixed with halotolerant activated sludge was added into SBR in order to test their bioaugmentation ability for shortcut nitrification system, which was treating for sewage containing sea water, and the difference between bioaugmentation system and original system was compared. The results showed that the maximum accumulation of NO2(-) -N in bioaugmentation system was 34.92% lower than that in original system, and the time of maximum accumulation of NO2(-) -N was 2 hours earlier than that in original system. The TN and COD was continuously decreasing in the later phase of nitrification in bioaugmentation system, and finally the removal rate of TN and COD were 15.24% and 5.39% higher than that in original system respectively, as well as the removal rate of NH4(+) -N and the nitrosation rate were 6.85% and 14.47% higher than that in original system. And the pH was 0.46 higher than that in original system, whereas the ORP was 25.84 mV lower. It was considered that the function of heterotrophic nitrification-aerobic denitrification bacteria should strengthen the performance of bioaugmentation system. When the seawater content raised to 70%, the stability of bioaugmentation system was better than that in original system, and the current that transforming shortcut nitrification to complete nitrification was restrained by heterotrophic nitrification-aerobic denitrification bacteria effectively. The number of heterotrophic nitrification-aerobic denitrification bacteria was changed when bioaugmentation system and original system ran in different phase and the bacteria had a great loss with the discharge of activated sludge. These results may provide a theoretical reference about the feasibility that the heterotrophic nitrification-aerobic denitrification bacteria applied in

  8. Simultaneous Heterotrophic Nitrification and Aerobic Denitrification by Chryseobacterium sp. R31 Isolated from Abattoir Wastewater

    PubMed Central

    Kundu, Pradyut; Pramanik, Arnab; Dasgupta, Arpita; Mukherjee, Somnath; Mukherjee, Joydeep

    2014-01-01

    A heterotrophic carbon utilizing microbe (R31) capable of simultaneous nitrification and denitrification (SND) was isolated from wastewater of an Indian slaughterhouse. From an initial COD value of 583.0 mg/L, 95.54% was removed whilst, from a starting NH4+-N concentration of 55.7 mg/L, 95.87% was removed after 48 h contact. The concentrations of the intermediates hydroxylamine, nitrite, and nitrate were low, thus ensuring nitrogen removal. Aerobic denitrification occurring during ammonium removal by R31 was confirmed by utilization of both nitrate and nitrite as nitrogen substrates. Glucose and succinate were superior while acetate and citrate were poor substrates for nitrogen removal. Molecular phylogenetic identification, supported by chemotaxonomic and physiological properties, assigned R31 as a close relative of Chryseobacterium haifense. The NH4+-N utilization rate and growth of strain R31 were found to be higher at C/N = 10 in comparison to those achieved with C/N ratios of 5 and 20. Monod kinetic coefficients, half saturation concentration (Ks), maximum rate of substrate utilization (k), yield coefficient, (Y) and endogenous decay coefficient (Kd) indicated potential application of R31 in large-scale SND process. This is the first report on concomitant carbon oxidation, nitrification, and denitrification in the genus Chryseobacterium and the associated kinetic coefficients. PMID:24991552

  9. Simultaneous heterotrophic nitrification and aerobic denitrification by the marine origin bacterium Pseudomonas sp. ADN-42.

    PubMed

    Jin, Ruofei; Liu, Tianqi; Liu, Guangfei; Zhou, Jiti; Huang, Jianyu; Wang, Aijie

    2015-02-01

    Recent research has highlighted the existence of some bacteria that are capable of performing heterotrophic nitrification and have a phenomenal ability to denitrify their nitrification products under aerobic conditions. A high-salinity-tolerant strain ADN-42 was isolated from Hymeniacidon perleve and found to display high heterotrophic ammonium removal capability. This strain was identified as Pseudomonas sp. via 16S rRNA gene sequence analysis. Gene cloning and sequencing analysis indicated that the bacterial genome contains N2O reductase function (nosZ) gene. NH3-N removal rate of ADN-42 was very high. And the highest removal rate was 6.52 mg/L · h in the presence of 40 g/L NaCl. Under the condition of pure oxygen (DO >8 mg/L), NH3-N removal efficiency was 56.9 %. Moreover, 38.4 % of oxygen remained in the upper gas space during 72 h without greenhouse gas N2O production. Keeping continuous and low level of dissolved oxygen (DO <3 mg/L) was helpful for better denitrification performance. All these results indicated that the strain has heterotrophic nitrification and aerobic denitrification abilities, which guarantee future application in wastewater treatment.

  10. Simultaneous heterotrophic nitrification and aerobic denitrification by the marine origin bacterium Pseudomonas sp. ADN-42.

    PubMed

    Jin, Ruofei; Liu, Tianqi; Liu, Guangfei; Zhou, Jiti; Huang, Jianyu; Wang, Aijie

    2015-02-01

    Recent research has highlighted the existence of some bacteria that are capable of performing heterotrophic nitrification and have a phenomenal ability to denitrify their nitrification products under aerobic conditions. A high-salinity-tolerant strain ADN-42 was isolated from Hymeniacidon perleve and found to display high heterotrophic ammonium removal capability. This strain was identified as Pseudomonas sp. via 16S rRNA gene sequence analysis. Gene cloning and sequencing analysis indicated that the bacterial genome contains N2O reductase function (nosZ) gene. NH3-N removal rate of ADN-42 was very high. And the highest removal rate was 6.52 mg/L · h in the presence of 40 g/L NaCl. Under the condition of pure oxygen (DO >8 mg/L), NH3-N removal efficiency was 56.9 %. Moreover, 38.4 % of oxygen remained in the upper gas space during 72 h without greenhouse gas N2O production. Keeping continuous and low level of dissolved oxygen (DO <3 mg/L) was helpful for better denitrification performance. All these results indicated that the strain has heterotrophic nitrification and aerobic denitrification abilities, which guarantee future application in wastewater treatment. PMID:25432342

  11. Analysis of Aerobic Respiration in Intact Skeletal Muscle Tissue by Microplate-Based Respirometry.

    PubMed

    Shintaku, Jonathan; Guttridge, Denis C

    2016-01-01

    Mitochondrial function is a key component of skeletal muscle health, and its dysfunction has been associated with a wide variety of diseases. Microplate-based respirometry measures aerobic respiration of live cells through extracellular changes in oxygen concentration. Here, we describe a methodology to measure aerobic respiration of intact murine skeletal muscle tissue. The tissues are not cultured, permeabilized, or enzymatically dissociated to single fibers, so there is minimal experimental manipulation affecting the samples prior to acquiring measurements. PMID:27492183

  12. Regulation of dissolved oxygen from accumulated nitrite during the heterotrophic nitrification and aerobic denitrification of Pseudomonas stutzeri T13.

    PubMed

    Sun, Yilu; Li, Ang; Zhang, Xuening; Ma, Fang

    2015-04-01

    The nitrogen-removing characteristics of Pseudomonas stutzeri T13, a heterotrophic nitrifying-aerobic denitrifying bacterium, were investigated. The ammonium and nitrate removal of the bacterium was found to reach nearly 100 % at 15 h. However, the total nitrogen (TN) removal rate reached only about 23.47 % because of the dramatic accumulation of nitrite at a high dissolved oxygen (DO) level (160 rpm). The process of nitrite reduction was found to be the bottleneck for the efficiency of aerobic denitrification. Decreasing the shaking speed from 160 to 50 rpm to lower the DO concentration during cultivation was an effective method of improving nitrite utilization because nitrite removal increased from 62.37 to 100 %. The 99.21 % capability of simultaneous heterotrophic nitrification and aerobic denitrification with TN removal was achieved at a relatively low DO level (50 rpm). PMID:25417744

  13. Molecular characterization of a microbial consortium involved in methane oxidation coupled to denitrification under micro-aerobic conditions

    PubMed Central

    Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu

    2014-01-01

    Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functional microorganisms. Real-time quantitative polymerase chain reaction results showed high numbers of methanotrophs and denitrifiers in the enriched consortium. The 16S rRNA gene clone library revealed that Methylococcaceae and Methylophilaceae were the dominant populations in the MOD ecosystem. Phylogenetic analyses of pmoA gene clone libraries indicated that all methanotrophs belonged to Methylococcaceae, a type I methanotroph employing the ribulose monophosphate pathway for methane oxidation. Methylotrophic denitrifiers of the Methylophilaceae that can utilize organic intermediates (i.e. formaldehyde, citrate and acetate) released from the methanotrophs played a vital role in aerobic denitrification. This study is the first report to confirm micro-aerobic denitrification and to make phylogenetic and functional assignments for some members of the microbial assemblages involved in MOD. PMID:24245852

  14. Molecular characterization of a microbial consortium involved in methane oxidation coupled to denitrification under micro-aerobic conditions.

    PubMed

    Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu

    2014-01-01

    Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functional microorganisms. Real-time quantitative polymerase chain reaction results showed high numbers of methanotrophs and denitrifiers in the enriched consortium. The 16S rRNA gene clone library revealed that Methylococcaceae and Methylophilaceae were the dominant populations in the MOD ecosystem. Phylogenetic analyses of pmoA gene clone libraries indicated that all methanotrophs belonged to Methylococcaceae, a type I methanotroph employing the ribulose monophosphate pathway for methane oxidation. Methylotrophic denitrifiers of the Methylophilaceae that can utilize organic intermediates (i.e. formaldehyde, citrate and acetate) released from the methanotrophs played a vital role in aerobic denitrification. This study is the first report to confirm micro-aerobic denitrification and to make phylogenetic and functional assignments for some members of the microbial assemblages involved in MOD.

  15. Modeling of simultaneous denitrification--anaerobic digestion--organic matter aerobic oxidation and nitrification in an anoxic-anaerobic-aerobic compact filter reactor.

    PubMed

    Moya, Jaime; Huiliñir, César; Peredo, Karol; Aspé, Estrella; Roeckel, Marlene

    2012-08-31

    A mathematical model was developed for a compact anoxic-anaerobic-aerobic filter reactor with liquid recirculation for the treatment of fishing effluents. The model includes denitrification, anaerobic digestion, aerobic carbon oxidation and nitrification steps, as well as an evaluation of the liquid gas mass transfer and pH. The model was calibrated using one experimental condition at a recycling ratio (R)=10, and was validated with R equal to 2 and 0, with an organic concentration of 554±24 mg TOCL(-1), salinity of 24 g L(-1) and hydraulic retention time (HRT) of 2 d. Carbon total removal is higher than 98%, while maximum nitrogen removal is 62% using total nitrification in the aerobic zone, due to a higher quantity of NO(x) produced which were recirculated to the anoxic zone. In the aerobic zone, simultaneous nitrification and denitrification processes occur, because the diffusion limitations cause a low oxygen penetration in the biofilm. In the anoxic-anaerobic zone, denitrification or methanogenesis inhibition by DO (caused by the recycled oxygen) is not observed.

  16. Activation of accumulated nitrite reduction by immobilized Pseudomonas stutzeri T13 during aerobic denitrification.

    PubMed

    Ma, Fang; Sun, Yilu; Li, Ang; Zhang, Xuening; Yang, Jixian

    2015-01-01

    The excellent removal efficiency of nitrate by the aerobic denitrifier, Pseudomonas stutzeri T13, was achieved in free cells system. However, poor nitrite reduction prevents efficient aerobic denitrification because of the nitrite accumulation. This problem could be conquered by immobilizing the cells on supports. In this study, strain T13 was immobilized by mycelial pellets (MPs), polyurethane foam cubes (PFCs) and sodium alginate beads (SABs). Higher removal percentages of TN in MP (43.78%), PFC (42.31%) and SAB (57.25%) systems were achieved compared with the free cell system (29.7%). Furthermore, the optimal condition for immobilized cell systems was as follows: 30°C, 100rpm shaking speed and pH 7. The shock-resistance of SAB system was relatively poor, which could collapse under either alkaline (pH=9) or high rotating (200rpm) conditions. The recycling experiments demonstrated that the high steady TN removal rate could be maintained for seven cycles in both MP and PFC systems. PMID:25827250

  17. Simultaneous nitrification and denitrification by EPSs in aerobic granular sludge enhanced nitrogen removal of ammonium-nitrogen-rich wastewater.

    PubMed

    Yan, Lilong; Zhang, Shaoliang; Hao, Guoxin; Zhang, Xiaolei; Ren, Yuan; Wen, Yan; Guo, Yihan; Zhang, Ying

    2016-02-01

    In this study, role of extracellular polymeric substances (EPSs) in enhancing nitrogen-removal from ammonium-nitrogen-rich wastewater using aerobic granular sludge (AGS) technology were analyzed. AGS enabled ammonium oxidation and denitrification to occur simultaneously. Air stripping and simultaneous nitrification-denitrification contributed to total-nitrogen removal. Clone-library analysis revealed that close relatives of Nitrosomonas eutropha and heterotrophic denitrifiers were dominant in the AGS, whereas anammox bacteria were not detected. EPSs adsorption of ammonium, nitrite, and nitrate nitrogen results in improved removal of nitrogen in batch experiments.

  18. [Identification and Nitrogen Removal Characteristics of a Heterotrophic Nitrification-Aerobic Denitrification Strain Isolated from Marine Environment].

    PubMed

    Sun, Qing-hua; Yu, De-shuang; Zhang, Pei-yu; Lin, Xue-zheng; Li, Jin

    2016-02-15

    A heterotrophic nitrification-aerobic denitrification strain named y5 was isolated from marine environment by traditional microbial isolation method using seawater as medium. It was identified as Klebsiella sp. based on the morphological, physiological and 16S rRNA sequence analysis. The experiment results showed that the optimal carbon resource was sodium citrate; the optimal pH was 7.0; and the optimal C/N was 17. The strain could use NH4Cl, NaNO2 and KNO3 as sole nitrogen source, and the removal efficiencies were77.07%, 64.14% and 100% after 36 hours, respectively. The removal efficiency reached 100% after 36 hours in the coexistence of NH4Cl, NaNO2 and KNO3. The results showed that the strain y5 had independent and efficient heterotrophic nitrification and aerobic denitrification activities in high salt wastewater. PMID:27363156

  19. Measuring aerobic respiration in stream ecosystems using the resazurin-resorufin system

    NASA Astrophysics Data System (ADS)

    GonzáLez-Pinzón, Ricardo; Haggerty, Roy; Myrold, David D.

    2012-09-01

    The use of smart tracers to study hydrologic systems is becoming more widespread. Smart tracers are compounds that irreversibly react in the presence of a process or condition under investigation. Resazurin (Raz) is a smart tracer that undergoes an irreversible reduction to resorufin (Rru) in the presence of cellular metabolic activity. We quantified the relationship between the transformation of Raz and aerobic bacterial respiration in pure culture experiments using two obligate aerobes and two facultative anaerobes, and in colonized surface and shallow (<10 cm) hyporheic sediments using reach-scale experiments. We found that the transformation of Raz to Rru was nearly perfectly (minr2 = 0.986), positively correlated with aerobic microbial respiration in all experiments. These results suggest that Raz can be used as a surrogate to measure respiration in situ and in vivoat different spatial scales, thus providing an alternative to investigate mechanistic controls of solute transport and stream metabolism on nutrient processing. Lastly, a comparison of respiration and mass-transfer rates in streams suggests that field-scale respiration is controlled by the slower of respiration and mass transfer, highlighting the need to understand both biogeochemistry and physics in stream ecosystems.

  20. Reducing NO and N₂O emission during aerobic denitrification by newly isolated Pseudomonas stutzeri PCN-1.

    PubMed

    Zheng, Maosheng; He, Da; Ma, Tao; Chen, Qian; Liu, Sitong; Ahmad, Muhammad; Gui, Mengyao; Ni, Jinren

    2014-06-01

    As two obligatory intermediates of denitrification, both NO and N2O had harmful environmental and biological impacts. An aerobic denitrifying bacterial strain PCN-1 was newly isolated and identified as Pseudomonas stutzeri, which was capable of high efficient nitrogen removal under aerobic condition with maximal NO and N2O accumulation as low as 0.003% and 0.33% of removed NO3(-)-N, respectively. Further experiment taking nitrite as denitrifying substrate indicated similar low NO and N2O emission of 0.006% and 0.29% of reduced NO2(-)-N, respectively. Reverse transcription-polymerase chain reaction (RT-PCR) analysis revealed that the coordinate expression of denitrification gene nirS (for cytochrome cd1 nitrite reductase), cnorB (for NO reductase) and nosZ (for N2O reductase) was the fundamental reason of low NO and N2O accumulation. Activated sludge system bioaugmented by strain PCN-1 demonstrated a significant reduction of NO and N2O emission from wastewater during aerobic denitrification, implied great potential of PCN-1 in practical applications.

  1. Genetic associations as indices of nitrogen cycling rates in an aerobic denitrification biofilter used for groundwater remediation.

    PubMed

    Zhang, Yan; Ji, Guodong; Wang, Rongjing

    2015-10-01

    An aerobic denitrification biofilter (ADB) for groundwater remediation was developed with high removal efficiencies (total nitrogen (TN): 82.3-95.8%; NO3(-)-N: 93.2-98.2%). Nitrate (NO3(-)-N) transformation rates stabilized between 21.0 and 23.4 g/(m(3) h), whereas nitrite (NO2(-)-N) and ammonium (NH4(+)-N) transformation rates remained less than 6.0 g/(m(3) h) as the dissolved oxygen (DO) level increased from 1.0 mg/L to 6.0 mg/L. Nitric oxide (NO) and nitrous oxide (N2O) accumulated with great fluctuations (NO: 0-1.6×10(-3) g/(m(3) h); N2O: 0.1-1.1g/(m(3)h)) throughout the experiment. This study suggested that gene associations reflect quantitative relationships with aerobic denitrification rates and can provide useful information regarding aerobic denitrification processes in groundwater. Especially, the qnorB/nosZ ratio acts as the main driver for NO3(-)-N and NH4(+)-N transformation, while the qnorB/nosZ ratio followed by the (nirS+nirK)/nosZ ratio serve a dominant role in the accumulation of N2O and NO.

  2. Bioturbation enhances the aerobic respiration of lake sediments in warming lakes.

    PubMed

    Baranov, Viktor; Lewandowski, Jörg; Krause, Stefan

    2016-08-01

    While lakes occupy less than 2% of the total surface of the Earth, they play a substantial role in global biogeochemical cycles. For instance, shallow lakes are important sites of carbon metabolism. Aerobic respiration is one of the important drivers of the carbon metabolism in lakes. In this context, bioturbation impacts of benthic animals (biological reworking of sediment matrix and ventilation of the sediment) on sediment aerobic respiration have previously been underestimated. Biological activity is likely to change over the course of a year due to seasonal changes of water temperatures. This study uses microcosm experiments to investigate how the impact of bioturbation (by Diptera, Chironomidae larvae) on lake sediment respiration changes when temperatures increase. While at 5°C, respiration in sediments with and without chironomids did not differ, at 30°C sediment respiration in microcosms with 2000 chironomids per m(2) was 4.9 times higher than in uninhabited sediments. Our results indicate that lake water temperature increases could significantly enhance lake sediment respiration, which allows us to better understand seasonal changes in lake respiration and carbon metabolism as well as the potential impacts of global warming. PMID:27484649

  3. Bioturbation enhances the aerobic respiration of lake sediments in warming lakes

    PubMed Central

    Krause, Stefan

    2016-01-01

    While lakes occupy less than 2% of the total surface of the Earth, they play a substantial role in global biogeochemical cycles. For instance, shallow lakes are important sites of carbon metabolism. Aerobic respiration is one of the important drivers of the carbon metabolism in lakes. In this context, bioturbation impacts of benthic animals (biological reworking of sediment matrix and ventilation of the sediment) on sediment aerobic respiration have previously been underestimated. Biological activity is likely to change over the course of a year due to seasonal changes of water temperatures. This study uses microcosm experiments to investigate how the impact of bioturbation (by Diptera, Chironomidae larvae) on lake sediment respiration changes when temperatures increase. While at 5°C, respiration in sediments with and without chironomids did not differ, at 30°C sediment respiration in microcosms with 2000 chironomids per m2 was 4.9 times higher than in uninhabited sediments. Our results indicate that lake water temperature increases could significantly enhance lake sediment respiration, which allows us to better understand seasonal changes in lake respiration and carbon metabolism as well as the potential impacts of global warming. PMID:27484649

  4. Mystery of the Toxic Flea Dip: An Interactive Approach to Teaching Aerobic Cellular Respiration

    ERIC Educational Resources Information Center

    Baines, A. T.; McVey, M.; Rybarczyk, B.; Thompson, J. T.; Wilkins, H. R.

    2004-01-01

    We designed an interrupted case study to teach aerobic cellular respiration to major and nonmajor biology students. The case is based loosely on a real-life incident of rotenone poisoning. It places students in the role of a coroner who must determine the cause of death of the victim. The case is presented to the students in four parts. Each part…

  5. Identification of B-type procyanidins in Fallopia spp. involved in biological denitrification inhibition.

    PubMed

    Bardon, Clément; Piola, Florence; Haichar, Feth el Zahar; Meiffren, Guillaume; Comte, Gilles; Missery, Boris; Balby, Manon; Poly, Franck

    2016-02-01

    Nitrogen (N) is considered as a main limiting factor in plant growth, and nitrogen losses through denitrification can be responsible for severe decreases in plant productivity. Recently, it was demonstrated that Fallopia spp. is responsible for biological denitrification inhibition (BDI) through the release of unknown secondary metabolites. Here, we investigate the secondary metabolites involved in the BDI of Fallopia spp. The antioxidant, protein precipitation capability of Fallopia spp. extracts was measured in relation to the aerobic respiration and denitrification of two bacteria (Gram positive and Gram negative). Proanthocyanidin concentrations were estimated. Proanthocyanidins in extracts were characterized by chromatographic analysis, purified and tested on the bacterial denitrification and aerobic respiration of two bacterial strains. The effect of commercial procyanidins on denitrification was tested on two different soil types. Denitrification and aerobic respiration inhibition were correlated with protein precipitation capacity and concentration of proanthocyanidins but not to antioxidant capacity. These proanthocyanidins were B-type procyanidins that inhibited denitrification more than the aerobic respiration of bacteria. In addition, procyanidins also inhibited soil microbial denitrification. We demonstrate that procyanidins are involved in the BDI of Fallopia spp. Our results pave the way to a better understanding of plant-microbe interactions and highlight future applications for a more sustainable agriculture.

  6. Unraveling characteristics of simultaneous nitrification, denitrification and phosphorus removal (SNDPR) in an aerobic granular sequencing batch reactor.

    PubMed

    He, Qiulai; Zhang, Shilu; Zou, Zhuocheng; Zheng, Li-An; Wang, Hongyu

    2016-11-01

    An aerobic granular sequencing batch reactor (SBR) on an aerobic/oxic/anoxic (AOA) mode was operated for 50days with acetate sodium as the sole carbon source for simultaneous carbon, nitrogen and phosphorus removal. Excellent removal efficiencies for chemical oxygen demand (COD) (94.46±3.59%), nitrogen (96.56±3.44% for ammonia nitrogen (NH4(+)-N) and 93.88±6.78% for total inorganic nitrogen (TIN)) and phosphorus (97.71±3.63%) were obtained over operation. Mechanisms for simultaneous nutrients removal were explored and the results indicated that simultaneous nitrification, denitrification and phosphorus removal (SNDPR) under aerobic conditions was mainly responsible for most of nitrogen and phosphorus removal. Identification and quantification of the granular AOA SBR revealed that higher rates of nutrients removal and more potentials were to be exploited by optimizing the operating conditions including time durations for AOA mode and the feeding compositions. PMID:27599624

  7. p63 supports aerobic respiration through hexokinase II.

    PubMed

    Viticchiè, Guiditta; Agostini, Massimiliano; Lena, Anna Maria; Mancini, Mara; Zhou, Huiqing; Zolla, Lello; Dinsdale, David; Saintigny, Gaelle; Melino, Gerry; Candi, Eleonora

    2015-09-15

    Short p63 isoform, ΔNp63, is crucial for epidermis formation, and it plays a pivotal role in controlling the turnover of basal keratinocytes by regulating the expression of a subset of genes involved in cell cycle and cell adhesion programs. The glycolytic enzyme hexokinase 2 (HK2) represents the first step of glucose utilization in cells. The family of HKs has four isoforms that differ mainly in their tissue and subcellular distribution. The preferential mitochondrial localization of HK2 at voltage-dependent anion channels provides access to ATP generated by oxidative phosphorylation and generates an ADP/ATP recycling mechanism to maintain high respiration rates and low electron leak. Here, we report that ΔNp63 depletion in human keratinocytes impairs mitochondrial basal respiration and increases mitochondrial membrane polarization and intracellular reactive oxygen species. We show ΔNp63-dependent regulation of HK2 expression, and we use ChIP, validated by p63-Chip sequencing genomewide profiling analysis, and luciferase assays to demonstrate the presence of one p63-specific responsive element within the 15th intronic region of the HK2 gene, providing evidence of a direct interaction. Our data support the notion of ΔNp63 as a master regulator in epithelial cells of a combined subset of molecular mechanisms, including cellular energy metabolism and respiration. The ΔNp63-HK2 axis is also present in epithelial cancer cells, suggesting that ΔNp63 could participate in cancer metabolic reprogramming. PMID:26324887

  8. p63 supports aerobic respiration through hexokinase II.

    PubMed

    Viticchiè, Guiditta; Agostini, Massimiliano; Lena, Anna Maria; Mancini, Mara; Zhou, Huiqing; Zolla, Lello; Dinsdale, David; Saintigny, Gaelle; Melino, Gerry; Candi, Eleonora

    2015-09-15

    Short p63 isoform, ΔNp63, is crucial for epidermis formation, and it plays a pivotal role in controlling the turnover of basal keratinocytes by regulating the expression of a subset of genes involved in cell cycle and cell adhesion programs. The glycolytic enzyme hexokinase 2 (HK2) represents the first step of glucose utilization in cells. The family of HKs has four isoforms that differ mainly in their tissue and subcellular distribution. The preferential mitochondrial localization of HK2 at voltage-dependent anion channels provides access to ATP generated by oxidative phosphorylation and generates an ADP/ATP recycling mechanism to maintain high respiration rates and low electron leak. Here, we report that ΔNp63 depletion in human keratinocytes impairs mitochondrial basal respiration and increases mitochondrial membrane polarization and intracellular reactive oxygen species. We show ΔNp63-dependent regulation of HK2 expression, and we use ChIP, validated by p63-Chip sequencing genomewide profiling analysis, and luciferase assays to demonstrate the presence of one p63-specific responsive element within the 15th intronic region of the HK2 gene, providing evidence of a direct interaction. Our data support the notion of ΔNp63 as a master regulator in epithelial cells of a combined subset of molecular mechanisms, including cellular energy metabolism and respiration. The ΔNp63-HK2 axis is also present in epithelial cancer cells, suggesting that ΔNp63 could participate in cancer metabolic reprogramming.

  9. Characterization of a halophilic heterotrophic nitrification-aerobic denitrification bacterium and its application on treatment of saline wastewater.

    PubMed

    Duan, Jinming; Fang, Hongda; Su, Bing; Chen, Jinfang; Lin, Jinmei

    2015-03-01

    A novel halophilic bacterium capable of heterotrophic nitrification-aerobic denitrification was isolated from marine sediments and identified as Vibrio diabolicus SF16. It had ability to remove 91.82% of NH4(+)-N (119.77 mg/L) and 99.71% of NO3(-)-N (136.43 mg/L). The nitrogen balance showed that 35.83% of initial NH4(+)-N (119.77 mg/L) was changed to intracellular nitrogen, and 53.98% of the initial NH4(+)-N was converted to gaseous denitrification products. The existence of napA gene further proved the aerobic denitrification ability of strain SF16. The optimum culture conditions were salinity 1-5%, sodium acetate as carbon source, C/N 10, and pH 7.5-9.5. When an aerated biological filter system inoculated with strain SF16 was employed to treat saline wastewater, the average removal efficiency of NH4(+)-N and TN reached 97.14% and 73.92%, respectively, indicating great potential of strain SF16 for future full-scale applications. PMID:25557251

  10. Removal of nitrogen by heterotrophic nitrification-aerobic denitrification of a phosphate accumulating bacterium Pseudomonas stutzeri YG-24.

    PubMed

    Li, Chune; Yang, Jinshui; Wang, Xin; Wang, Entao; Li, Baozhen; He, Ruoxue; Yuan, Hongli

    2015-04-01

    Phosphate accumulating bacterium Pseudomonas stutzeri YG-24 exhibited efficient heterotrophic nitrification and aerobic denitrification ability. Single factor experiments showed that both heterotrophic nitrification and aerobic denitrification occurred with sodium citrate as carbon source and lower C/N ratio of 8. High average NH4(+)-N, NO2(-)-N and NO3(-)-N removal rates of 8.75, 7.51 and 7.73 mg L(-1)h(-1) were achieved. The application of strain YG-24 in wastewater samples resulted in TN, NH4(+)-N, NO2(-)-N, NO3(-)-N and P removal efficiencies of 85.28%, 88.13%, 86.15%, 70.83% and 51.21%. Sequencing and quantitative amplification by real-time PCR of napA, nirS and ppk showed that nitrogen removal pathway of strain YG-24 was achieved through heterotrophic ammonium nitrification coupled with fast nitrite denitrification (NH4(+)-N to NO2(-)-N and then to gaseous nitrogen) directly. These results demonstrated the strain as a suitable candidate to simultaneously remove both nitrogen and phosphate in wastewater treatment.

  11. Simultaneous phosphorus uptake and denitrification by EBPR-r biofilm under aerobic conditions: effect of dissolved oxygen.

    PubMed

    Wong, Pan Yu; Ginige, Maneesha P; Kaksonen, Anna H; Cord-Ruwisch, Ralf; Sutton, David C; Cheng, Ka Yu

    2015-01-01

    A biofilm process, termed enhanced biological phosphorus removal and recovery (EBPR-r), was recently developed as a post-denitrification approach to facilitate phosphorus (P) recovery from wastewater. Although simultaneous P uptake and denitrification was achieved despite substantial intrusion of dissolved oxygen (DO >6 mg/L), to what extent DO affects the process was unclear. Hence, in this study a series of batch experiments was conducted to assess the activity of the biofilm under various DO concentrations. The biofilm was first allowed to store acetate (as internal storage) under anaerobic conditions, and was then subjected to various conditions for P uptake (DO: 0-8 mg/L; nitrate: 10 mg-N/L; phosphate: 8 mg-P/L). The results suggest that even at a saturating DO concentration (8 mg/L), the biofilm could take up P and denitrify efficiently (0.70 mmol e(-)/g total solids*h). However, such aerobic denitrification activity was reduced when the biofilm structure was physically disturbed, suggesting that this phenomenon was a consequence of the presence of oxygen gradient across the biofilm. We conclude that when a biofilm system is used, EBPR-r can be effectively operated as a post-denitrification process, even when oxygen intrusion occurs. PMID:26398030

  12. Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration.

    PubMed

    Gao, Haichun; Barua, Soumitra; Liang, Yili; Wu, Lin; Dong, Yangyang; Reed, Samantha; Chen, Jingrong; Culley, Dave; Kennedy, David; Yang, Yunfeng; He, Zhili; Nealson, Kenneth H; Fredrickson, James K; Tiedje, James M; Romine, Margaret; Zhou, Jizhong

    2010-07-01

    Shewanella are renowned for their ability to utilize a wide range of electron acceptors (EA) for respiration, which has been partially accredited to the presence of a large number of the c-type cytochromes. To investigate the involvement of c-type cytochrome proteins in aerobic and anaerobic respiration of Shewanella oneidensis Mr -1, 36 in-frame deletion mutants, among possible 41 predicted, c-type cytochrome genes were obtained. The potential involvement of each individual c-type cytochrome in the reduction of a variety of EAs was assessed individually as well as in competition experiments. While results on the well-studied c-type cytochromes CymA(SO4591) and MtrC(SO1778) were consistent with previous findings, collective observations were very interesting: the responses of S. oneidensis Mr -1 to low and highly toxic metals appeared to be significantly different; CcoO, CcoP and PetC, proteins involved in aerobic respiration in various organisms, played critical roles in both aerobic and anaerobic respiration with highly toxic metals as EA. In addition, these studies also suggested that an uncharacterized c-type cytochrome (SO4047) may be important to both aerobiosis and anaerobiosis.

  13. Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration

    SciTech Connect

    Gao, Haichun; Barua, Soumitra; Liang, Yili; Wu, Lianming; Dong, Yangyang; Reed, Samantha B.; Chen, Jingrong; Culley, David E.; Kennedy, David W.; Yang, Yunfeng; He, Zhili; Nealson, Kenneth H.; Fredrickson, Jim K.; Tiedje, James M.; Romine, Margaret F.; Zhou, Jizhong

    2010-06-24

    Shewanella are renowned for their ability to utilize a wide range of electron acceptors (EA) for respiration, which has been partially accredited to the presence of a large number of the c-type cytochromes. To investigate the involvement of c-type cytochrome proteins in aerobic and anaerobic respiration of Shewanella oneidensis Mr -1, 36 in-frame deletion mutants, among possible 41 predicted, c-type cytochrome genes were obtained. The potential involvement of each individual c-type cytochrome in the reduction of a variety of EAs was assessed individually as well as in competition experiments. While results on the wellstudied c-type cytochromes CymA(SO4591) and MtrC(SO1778) were consistent with previous findings, collective observations were very interesting: the responses of S. oneidensis Mr -1 to low and highly toxic metals appeared to be significantly different; CcoO, CcoP and PetC, proteins involved in aerobic respiration in various organisms, played critical roles in both aerobic and anaerobic respiration with highly toxic metals as EA. In addition, these studies also suggested that an uncharacterized c-type cytochrome (SO4047) may be important to both aerobiosis and anaerobiosis.

  14. Impacts of Shewanella oneidensis c‐type cytochromes on aerobic and anaerobic respiration

    PubMed Central

    Gao, Haichun; Barua, Soumitra; Liang, Yili; Wu, Lin; Dong, Yangyang; Reed, Samantha; Chen, Jingrong; Culley, Dave; Kennedy, David; Yang, Yunfeng; He, Zhili; Nealson, Kenneth H.; Fredrickson, James K.; Tiedje, James M.; Romine, Margaret; Zhou, Jizhong

    2010-01-01

    Summary Shewanella are renowned for their ability to utilize a wide range of electron acceptors (EA) for respiration, which has been partially accredited to the presence of a large number of the c‐type cytochromes. To investigate the involvement of c‐type cytochrome proteins in aerobic and anaerobic respiration of Shewanella oneidensis Mr ‐1, 36 in‐frame deletion mutants, among possible 41 predicted, c‐type cytochrome genes were obtained. The potential involvement of each individual c‐type cytochrome in the reduction of a variety of EAs was assessed individually as well as in competition experiments. While results on the well‐studied c‐type cytochromes CymA(SO4591) and MtrC(SO1778) were consistent with previous findings, collective observations were very interesting: the responses of S. oneidensis Mr ‐1 to low and highly toxic metals appeared to be significantly different; CcoO, CcoP and PetC, proteins involved in aerobic respiration in various organisms, played critical roles in both aerobic and anaerobic respiration with highly toxic metals as EA. In addition, these studies also suggested that an uncharacterized c‐type cytochrome (SO4047) may be important to both aerobiosis and anaerobiosis. PMID:21255343

  15. The Lomagundi Event Marks Post-Pasteur Point Evolution of Aerobic Respiration: A Hypothesis

    NASA Astrophysics Data System (ADS)

    Raub, T. D.; Kirschvink, J. L.; Nash, C. Z.; Raub, T. M.; Kopp, R. E.; Hilburn, I. A.

    2009-05-01

    All published early Earth carbon cycle models assume that aerobic respiration is as ancient as oxygenic photosynthesis. However, aerobic respiration shuts down at oxygen concentrations below the Pasteur Point, (.01 of the present atmospheric level, PAL). As geochemical processes are unable to produce even local oxygen concentrations above .001 PAL, it follows that aerobic respiration could only have evolved after oxygenic photosynthesis, implying a time gap. The evolution of oxygen reductase-utilizing metabolisms presumably would have occupied this interval. During this time the PS-II-generated free oxygen would have been largely unavailable for remineralization of dissolved organic carbon and so would have profoundly shifted the burial ratio of organic/inorganic carbon. We argue that the sequential geological record of the Makganyene (Snowball?) glaciation (2.3-2.22), the exessively aerobic Hekpoort and coeval paleosols, the Lomagundi-Jatuli carbon isotopic excursion (ending 2.056 Ga), and the deposition of concentrated, sedimentary organic carbon (shungite) mark this period of a profoundly unbalanced global carbon cycle. The Kopp et al. (2005) model for oxyatmoversion agrees with phylogenetic evidence for the radiation of cyanobacteria followed closely by the radiation of gram-negative lineages containing magnetotactic bacteria, which depend upon vertical oxygen gradients. These organisms include delta-Proteobacteria from which the mitochondrial ancestor originated. The Precambrian carbon cycle was rebalanced after a series of biological innovations allowed utilization of the high redox potential of free oxygen. Aerobic respiration in mitochondria required the evolution of a unique family of Fe-Cu oxidases, one of many factors contributing to the >210 Myr delay between the Makganyene deglaciation and the end of the Lomagundi-Jatuli event. We speculate that metalliferious fluids associated with the eruption of the Bushveld complex facilitated evolution of these

  16. Intracellular azo decolorization is coupled with aerobic respiration by a Klebsiella oxytoca strain.

    PubMed

    Yu, Lei; Zhang, Xiao-Yu; Xie, Tian; Hu, Jin-Mei; Wang, Shi; Li, Wen-Wei

    2015-03-01

    Reduction of azo dye methyl red coupled with aerobic respiration by growing cultures of Klebsiella oxytoca GS-4-08 was investigated. In liquid media containing dye and 0.6 % glucose in a mineral salts base, 100 mg l(-1) of the dye are completely removed in 3 h under shaking conditions. The dye cannot be aerobically decolorized by strain GS-4-08 without extra carbon sources, indicating a co-metabolism process. Higher initial dye concentration prolonged the lag phase of the cell growth, but final cell concentrations of each batches reached a same level with range from 6.3 to 7.6 mg l(-1) after the dye adaption period. This strain showed stronger dye tolerance and decolorization ability than many reported strains. Furthermore, a new intracellular oxygen-insensitive azoreductase was isolated from this strain, and the specific activity of enzyme was 0.846 and 0.633 U mg(-1) protein in the presence of NADH and NADPH, respectively. N,N dimethyl-p-phenylenediamine and anthranilic acid were stoichiometrically released from MR dye, indicating the breakage of azo bonds accounts for the intracellular decolorization. Combining the characteristics of azoreductase, the stoichiometry of EMP, and TCA cycle, the electron transfer chain theory of aerobic respiration, and the possible mechanism of aerobic respiration coupled with azo reduction by K. oxytoca GS-4-08 are proposed. This study is expected to provide a sound theoretical basis for the development of the K. oxytoca strain in aerobic process for azo dye containing wastewaters. PMID:25343980

  17. Mystery of the toxic flea dip: an interactive approach to teaching aerobic cellular respiration.

    PubMed

    Baines, A T; McVey, M; Rybarczyk, B; Thompson, J T; Wilkins, H R

    2004-01-01

    We designed an interrupted case study to teach aerobic cellular respiration to major and nonmajor biology students. The case is based loosely on a real-life incident of rotenone poisoning. It places students in the role of a coroner who must determine the cause of death of the victim. The case is presented to the students in four parts. Each part is followed by discussion questions that the students answer in small groups prior to a classwide discussion. Successive parts of the case provide additional clues to the mystery and help the students focus on the physiological processes involved in aerobic respiration. Students learn the information required to solve the mystery by reading the course textbook prior to class, listening to short lectures interspersed throughout the case, and discussing the case in small groups. The case ends with small group discussions in which the students are given the names and specific molecular targets of other poisons of aerobic respiration and asked to determine which process (i.e., glycolysis, citric acid cycle, or the electron transport chain) the toxin disrupts. PMID:22039346

  18. [Cultivation of Aerobic Granular Sludge with Real Low Concentration Domestic Wastewater and Its Denitrification Performances Under the Continuous Flow].

    PubMed

    Yao, Li; Xin, Xin; Lu, Hang; Zhu, Liao-dong; Xie, Si-jian

    2015-07-01

    The COD, ammonia and total nitrogen removal efficiency, as well as the physical properties of aerobic granular sludge (AGS) and its denitrification kinetics were studied in the continuous flow reactor. The experimental results showed that the AGS was successfully cultivated in the continuous flow system within 40 days. The nitrogen and carbon removal efficiencies were gradually improved with the improvement of sludge granulation. In the running stage of 41 - 60 days, the COD, ammonia and TN removal efficiency could reach 85. 54% , 95. 5% and 65. 56%, respectively. And the nitrate and nitrite nitrogen accumulation was not high in the reaction process. Mature AGS had more void structure and a large number of extracellular polymeric substances. It had significant advantages compared with the seed sludge in the aspects of moisture content, wet density, sedimentation rate, mechanical strength, and SVI values. The simultaneous nitrification and denitrification efficiency was 81. 69% , the nitrification rate and denitrification rate were 5.78 mg . (L.h) -1 and 4. 90 mg . (L.h) -1, respectively. PMID:26489334

  19. Removal of nitrogen by heterotrophic nitrification-aerobic denitrification of a novel metal resistant bacterium Cupriavidus sp. S1.

    PubMed

    Sun, Zhiyi; Lv, Yongkang; Liu, Yuxiang; Ren, Ruipeng

    2016-11-01

    A novel heterotrophic nitrifying and metal resistant bacterium was isolated and identified as Cupriavidus sp. S1. The utilization of ammonium, nitrate and nitrite as well as the production of N2 proved the heterotrophic nitrification and aerobic denitrification ability of S1. The ammonium, nitrate and nitrite removal efficiencies were 99.68%, 98.03% and 99.81%, with removal rates of 10.43, 8.64 and 8.36mg/L/h, respectively. A multiple regression equation well described the relationship between carbon source utilization, cell growth and nitrification. Keeping the shaking speed at 120rpm was beneficial for denitrification. Moreover, different forms of nitrogen source could be utilize in simultaneous nitrification and denitrification. Additionally, the efficient removal of ammonium occurred at 20.0mg/LZn(2+), or 10.0mg/LNi(2+) or 8.0mg/LCu(2+) or 5.0mg/LCr(6+), 33.35mmol/L sodium pyruvate, C/N 12-28. These findings demonstrate that S1 was effective for nitrogen removal in industrial wastewater containing heavy metal. PMID:27566522

  20. Interaction of Cr(VI) reduction and denitrification by strain Pseudomonas aeruginosa PCN-2 under aerobic conditions.

    PubMed

    He, Da; Zheng, Maosheng; Ma, Tao; Li, Can; Ni, Jinren

    2015-06-01

    Inhibition of efficient denitrification in presence of toxic heavy metals is one of the current problems encountered in municipal wastewater treatment plants. This paper presents how to remove hexavalent chromium (Cr(VI)) and nitrate simultaneously by the novel strain Pseudomonas aeruginosa PCN-2 under aerobic conditions. The capability of strain PCN-2 for Cr(VI) and nitrate reduction was confirmed by PCR analysis of gene ChrR, napA, nirS, cnorB, nosZ, while Cr(VI) reduction was proved via an initial single-electron transfer through Cr(V) detection using electron paramagnetic resonance. Experimental results demonstrated that Cr(VI) and nitrate reduction by strain PCN-2 was much faster at pH 8-9 and higher initial cell concentration. However, increasing Cr(VI) concentration would inhibit aerobic denitrification process and result in an significant delay of nitrate reduction or N2O accumulation, which was attributed to competition between three electron acceptors, i.e., Cr(VI), O2 and nitrate in the electron transport chain.

  1. Simultaneous nitrification/denitrification and trace organic contaminant (TrOC) removal by an anoxic-aerobic membrane bioreactor (MBR).

    PubMed

    Phan, Hop V; Hai, Faisal I; Kang, Jinguo; Dam, Hoa K; Zhang, Ren; Price, William E; Broeckmann, Andreas; Nghiem, Long D

    2014-08-01

    Simultaneous nitrification/denitrification and trace organic contaminant (TrOC) removal during wastewater treatment by an integrated anoxic-aerobic MBR was examined. A set of 30 compounds was selected to represent TrOCs that occur ubiquitously in domestic wastewater. The system achieved over 95% total organic carbon (TOC) and over 80% total nitrogen (TN) removal. In addition, 21 of the 30 TrOCs investigated here were removed by over 90%. Low oxidation reduction potential (i.e., anoxic/anaerobic) regimes were conducive to moderate to high (50% to 90%) removal of nine TrOCs. These included four pharmaceuticals and personal care products (primidone, metronidazole, triclosan, and amitriptyline), one steroid hormone (17β-estradiol-17-acetate), one industrial chemical (4-tert-octylphenol) and all three selected UV filters (benzophenone, oxybenzone, and octocrylene). Internal recirculation between the anoxic and aerobic bioreactors was essential for anoxic removal of remaining TrOCs. A major role of the aerobic MBR for TOC, TN, and TrOC removal was observed.

  2. Models of oxic respiration, denitrification and sulfate reduction in zones of coastal upwelling

    NASA Astrophysics Data System (ADS)

    Canfield, D. E.

    2006-12-01

    Coastal upwelling zones support some of the highest rates of primary production in the oceans. The settling and subsequent decomposition of this organic matter promotes oxygen depletion. In the Eastern tropical North and South Pacific and the Arabian Sea, large tracts of anoxic water develop, where intensive N 2 production through denitrification and anammox accounts for about 1/3 of the total loss of fixed nitrogen in the marine realm. It is curious that despite extensive denitrification in these waters, complete nitrate removal and the onset of sulfate reduction is extremely rare. A simple box model is constructed here to reproduce the dynamics of carbon, oxygen and nutrient cycling in coastal upwelling zones. The model is constructed with five boxes, where water is exchanged between the boxes by vertical and horizontal mixing and advection. These primary physical drivers control the dynamics of the system. The model demonstrates that in the absence of nitrogen fixation, the anoxic waters in a coastal upwelling system will not become nitrate free. This is because nitrate is the limiting nutrient controlling primary production, and if nitrate concentration becomes too low, primary production rate drops and this reduces rates of nitrate removal through N 2 production. With nitrogen fixation, however, complete nitrate depletion can occur and sulfate reduction will ensue. This situation is extremely rare in coastal upwelling zones, probably because nitrogen-fixing bacteria do not prosper in the high nutrient, turbid waters as typically in these areas. Finally, it is predicted here that the chemistry of the upwelling system will develop in a similar matter regardless whether N 2 production is dominated by anaerobic ammonium oxidation (anammox) or canonical heterotrophic denitrification.

  3. Respiration and respiratory enzyme activity in aerobic and anaerobic cultures of the marine denitrifying bacterium, Pseudomonas perfectomarinus

    NASA Astrophysics Data System (ADS)

    Packard, T. T.; Garfield, P. C.; Martinez, R.

    1983-03-01

    Oxygen consumption, nitrate reduction, respiratory electron transport activity, and nitrate reductase activity were measured in aerobic and anaerobic cultures of the marine bacterium, Pseudomonas perfectomarinus. The respiratory electron transport activity was closely correlated with oxygen consumption ( r = 0.98) in aerobic cultures and nearly as well correlated with nitrate reductase activity ( r = 0.91) and nitrate reduction ( r = 0.85) in anaerobic cultures. It was also well correlated with biomass in both aerobic ( r = 0.99) and anaerobic ( r = 0.94) cultures supporting the use of tetrazolium reduction as an index of living biomass. Time courses of nitrate and nitrate in the anaerobic cultures demonstrated that at nitrate concentrations above 1 mM, denitrification proceeds stepwise. Time courses of pH in anaerobic cultures revealed a rise from 7 to 8.5 during nitrite reduction indicating net proton utilization. This proton utilization is predicted by the stoichiometry of denitrification. Although the experiments were not under 'simulated in situ' conditions, the results are relevant to studies of denitrification, to bacterial ATP production, and to the respiratory activity of marine plankton in the ocean.

  4. Oxygen distribution and aerobic respiration in the north and south eastern tropical Pacific oxygen minimum zones

    NASA Astrophysics Data System (ADS)

    Tiano, Laura; Garcia-Robledo, Emilio; Dalsgaard, Tage; Devol, Allan H.; Ward, Bess B.; Ulloa, Osvaldo; Canfield, Donald E.; Peter Revsbech, Niels

    2014-12-01

    Highly sensitive STOX O2 sensors were used for determination of in situ O2 distribution in the eastern tropical north and south Pacific oxygen minimum zones (ETN/SP OMZs), as well as for laboratory determination of O2 uptake rates of water masses at various depths within these OMZs. Oxygen was generally below the detection limit (few nmol L-1) in the core of both OMZs, suggesting the presence of vast volumes of functionally anoxic waters in the eastern Pacific Ocean. Oxygen was often not detectable in the deep secondary chlorophyll maximum found at some locations, but other secondary maxima contained up to ~0.4 μmol L-1. Directly measured respiration rates were high in surface and subsurface oxic layers of the coastal waters, reaching values up to 85 nmol L-1 O2 h-1. Substantially lower values were found at the depths of the upper oxycline, where values varied from 2 to 33 nmol L-1 O2 h-1. Where secondary chlorophyll maxima were found the rates were higher than in the oxic water just above. Incubation times longer than 20 h, in the all-glass containers, resulted in highly increased respiration rates. Addition of amino acids to the water from the upper oxycline did not lead to a significant initial rise in respiration rate within the first 20 h, indicating that the measurement of respiration rates in oligotrophic Ocean water may not be severely affected by low levels of organic contamination during sampling. Our measurements indicate that aerobic metabolism proceeds efficiently at extremely low oxygen concentrations with apparent half-saturation concentrations (Km values) ranging from about 10 to about 200 nmol L-1.

  5. Augmentation of aerobic respiration and mitochondrial biogenesis in skeletal muscle by hypoxia preconditioning with cobalt chloride

    SciTech Connect

    Saxena, Saurabh; Shukla, Dhananjay; Bansal, Anju

    2012-11-01

    High altitude/hypoxia training is known to improve physical performance in athletes. Hypoxia induces hypoxia inducible factor-1 (HIF-1) and its downstream genes that facilitate hypoxia adaptation in muscle to increase physical performance. Cobalt chloride (CoCl{sub 2}), a hypoxia mimetic, stabilizes HIF-1, which otherwise is degraded in normoxic conditions. We studied the effects of hypoxia preconditioning by CoCl{sub 2} supplementation on physical performance, glucose metabolism, and mitochondrial biogenesis using rodent model. The results showed significant increase in physical performance in cobalt supplemented rats without (two times) or with training (3.3 times) as compared to control animals. CoCl{sub 2} supplementation in rats augmented the biological activities of enzymes of TCA cycle, glycolysis and cytochrome c oxidase (COX); and increased the expression of glucose transporter-1 (Glut-1) in muscle showing increased glucose metabolism by aerobic respiration. There was also an increase in mitochondrial biogenesis in skeletal muscle observed by increased mRNA expressions of mitochondrial biogenesis markers which was further confirmed by electron microscopy. Moreover, nitric oxide production increased in skeletal muscle in cobalt supplemented rats, which seems to be the major reason for peroxisome proliferator activated receptor-gamma coactivator-1α (PGC-1α) induction and mitochondrial biogenesis. Thus, in conclusion, we state that hypoxia preconditioning by CoCl{sub 2} supplementation in rats increases mitochondrial biogenesis, glucose uptake and metabolism by aerobic respiration in skeletal muscle, which leads to increased physical performance. The significance of this study lies in understanding the molecular mechanism of hypoxia adaptation and improvement of work performance in normal as well as extreme conditions like hypoxia via hypoxia preconditioning. -- Highlights: ► We supplemented rats with CoCl{sub 2} for 15 days along with training. ► Co

  6. The HMGB1 protein induces a metabolic type of tumour cell death by blocking aerobic respiration.

    PubMed

    Gdynia, Georg; Sauer, Sven W; Kopitz, Jürgen; Fuchs, Dominik; Duglova, Katarina; Ruppert, Thorsten; Miller, Matthias; Pahl, Jens; Cerwenka, Adelheid; Enders, Markus; Mairbäurl, Heimo; Kamiński, Marcin M; Penzel, Roland; Zhang, Christine; Fuller, Jonathan C; Wade, Rebecca C; Benner, Axel; Chang-Claude, Jenny; Brenner, Hermann; Hoffmeister, Michael; Zentgraf, Hanswalter; Schirmacher, Peter; Roth, Wilfried

    2016-01-01

    The high-mobility group box 1 (HMGB1) protein has a central role in immunological antitumour defense. Here we show that natural killer cell-derived HMGB1 directly eliminates cancer cells by triggering metabolic cell death. HMGB1 allosterically inhibits the tetrameric pyruvate kinase isoform M2, thus blocking glucose-driven aerobic respiration. This results in a rapid metabolic shift forcing cells to rely solely on glycolysis for the maintenance of energy production. Cancer cells can acquire resistance to HMGB1 by increasing glycolysis using the dimeric form of PKM2, and employing glutaminolysis. Consistently, we observe an increase in the expression of a key enzyme of glutaminolysis, malic enzyme 1, in advanced colon cancer. Moreover, pharmaceutical inhibition of glutaminolysis sensitizes tumour cells to HMGB1 providing a basis for a therapeutic strategy for treating cancer. PMID:26948869

  7. The HMGB1 protein induces a metabolic type of tumour cell death by blocking aerobic respiration

    PubMed Central

    Gdynia, Georg; Sauer, Sven W.; Kopitz, Jürgen; Fuchs, Dominik; Duglova, Katarina; Ruppert, Thorsten; Miller, Matthias; Pahl, Jens; Cerwenka, Adelheid; Enders, Markus; Mairbäurl, Heimo; Kamiński, Marcin M.; Penzel, Roland; Zhang, Christine; Fuller, Jonathan C.; Wade, Rebecca C.; Benner, Axel; Chang-Claude, Jenny; Brenner, Hermann; Hoffmeister, Michael; Zentgraf, Hanswalter; Schirmacher, Peter; Roth, Wilfried

    2016-01-01

    The high-mobility group box 1 (HMGB1) protein has a central role in immunological antitumour defense. Here we show that natural killer cell-derived HMGB1 directly eliminates cancer cells by triggering metabolic cell death. HMGB1 allosterically inhibits the tetrameric pyruvate kinase isoform M2, thus blocking glucose-driven aerobic respiration. This results in a rapid metabolic shift forcing cells to rely solely on glycolysis for the maintenance of energy production. Cancer cells can acquire resistance to HMGB1 by increasing glycolysis using the dimeric form of PKM2, and employing glutaminolysis. Consistently, we observe an increase in the expression of a key enzyme of glutaminolysis, malic enzyme 1, in advanced colon cancer. Moreover, pharmaceutical inhibition of glutaminolysis sensitizes tumour cells to HMGB1 providing a basis for a therapeutic strategy for treating cancer. PMID:26948869

  8. The HMGB1 protein induces a metabolic type of tumour cell death by blocking aerobic respiration.

    PubMed

    Gdynia, Georg; Sauer, Sven W; Kopitz, Jürgen; Fuchs, Dominik; Duglova, Katarina; Ruppert, Thorsten; Miller, Matthias; Pahl, Jens; Cerwenka, Adelheid; Enders, Markus; Mairbäurl, Heimo; Kamiński, Marcin M; Penzel, Roland; Zhang, Christine; Fuller, Jonathan C; Wade, Rebecca C; Benner, Axel; Chang-Claude, Jenny; Brenner, Hermann; Hoffmeister, Michael; Zentgraf, Hanswalter; Schirmacher, Peter; Roth, Wilfried

    2016-03-07

    The high-mobility group box 1 (HMGB1) protein has a central role in immunological antitumour defense. Here we show that natural killer cell-derived HMGB1 directly eliminates cancer cells by triggering metabolic cell death. HMGB1 allosterically inhibits the tetrameric pyruvate kinase isoform M2, thus blocking glucose-driven aerobic respiration. This results in a rapid metabolic shift forcing cells to rely solely on glycolysis for the maintenance of energy production. Cancer cells can acquire resistance to HMGB1 by increasing glycolysis using the dimeric form of PKM2, and employing glutaminolysis. Consistently, we observe an increase in the expression of a key enzyme of glutaminolysis, malic enzyme 1, in advanced colon cancer. Moreover, pharmaceutical inhibition of glutaminolysis sensitizes tumour cells to HMGB1 providing a basis for a therapeutic strategy for treating cancer.

  9. A rapid in situ respiration test for measuring aerobic biodegradation rates of hydrocarbons in soil.

    PubMed

    Hinchee, R E; Ong, S K

    1992-10-01

    An in situ test method to measure the aerobic biodegradation rates of hydrocarbons in contaminated soil is presented. The test method provides an initial assessment of bioventing as a remediation technology for hydrocarbon-contaminated soil. The in situ respiration test consists of ventilating the contaminated soil of the unsaturated zone with air and periodically monitoring the depletion of oxygen (O2) and production of carbon dioxide (CO2) over time after the air is turned off. The test is simple to implement and generally takes about four to five days to complete. The test was applied at eight hydrocarbon-contaminated sites of different geological and climatic conditions. These sites were contaminated with petroleum products or petroleum fuels, except for two sites where the contaminants were primarily polycyclic aromatic hydrocarbons. Oxygen utilization rates for the eight sites ranged from 0.02 to 0.99 percent O2/hour. Estimated biodegradation rates ranged from 0.4 to 19 mg/kg of soil/day. These rates were similar to the biodegradation rates obtained from field and pilot studies using mass balance methods. Estimated biodegradation rates based on O2 utilization were generally more reliable (especially for alkaline soils) than rates based on CO2 production. CO2 produced from microbial respiration was probably converted to carbonate under alkaline conditions.

  10. Preconditioning with ethyl 3,4-dihydroxybenzoate augments aerobic respiration in rat skeletal muscle

    PubMed Central

    Nimker, Charu; Singh, Deependra Pratap; Saraswat, Deepika; Bansal, Anju

    2016-01-01

    Muscle respiratory capacity decides the amount of exertion one’s skeletal muscle can undergo, and endurance exercise is believed to increase it. There are also certain preconditioning methods by which muscle respiratory and exercise performance can be enhanced. In this study, preconditioning with ethyl 3,4-dihydroxybenzoate (EDHB), a prolyl hydroxylase domain enzyme inhibitor, has been investigated to determine its effect on aerobic metabolism and bioenergetics in skeletal muscle, thus facilitating boost in physical performance in a rat model. We observed that EDHB supplementation increases aerobic metabolism via upregulation of HIF-mediated GLUT1 and GLUT4, thus enhancing glucose uptake in muscles. There was also a twofold rise in the activity of enzymes of tricarboxylic acid (TCA) cycle and glycolysis, ie, hexokinase and phosphofructokinase. There was an increase in citrate synthase and succinate dehydrogenase activity, resulting in the rise in the levels of ATP due to enhanced Krebs cycle activity as substantiated by enhanced acetyl-CoA levels in EDHB-treated rats as compared to control group. Increased lactate dehydrogenase activity, reduced expression of monocarboxylate transporter 1, and increase in monocarboxylate transporter 4 suggest transport of lactate from muscle to blood. There was a concomitant decrease in plasma lactate, which might be due to enhanced transport of lactate from blood to the liver. This was further supported by the rise in liver pyruvate levels and liver glycogen levels in EDHB-supplemented rats as compared to control rats. These results suggest that EDHB supplementation leads to improved physical performance due to the escalation of aerobic respiration quotient, ie, enhanced muscle respiratory capacity. PMID:27800513

  11. [Isolation, Identification and Nitrogen Removal Characteristics of a Heterotrophic Nitrification-Aerobic Denitrification Strain y3 Isolated from Marine Environment].

    PubMed

    Sun, Qing-hua; Yu, De-shuang; Zhang, Pei-yu; Lin, Xue-zheng; Xu, Guang-yao; Li, Jin

    2016-03-15

    A heterotrophic nitrification--aerobic denitrification bacterium named y3 was isolated from the sludge of Jiaozhou Bay using the enrichment medium with seawater as the matrix. It was identified as Pseudomonas sp. based on the morphological observation, physiological experiments and sequence analysis of 16S rRNA. The experiment results showed that the optimal carbon resource was sodium citrate, the optimal pH was 7.0, and the optimal C/N was 13. The strain could use NH₄Cl, NaNO₂ and KNO₃ as sole nitrogen source, and the removal efficiencies were 98.69%, 78.38% and 72.95% within 20 hours, respectively. There was no nitrate and nitrite accumulation during the heterotrophic nitrification process. Within 20 hours, the nitrogen removal efficiencies were 99.56%, 99.75% and 99.41%, respectively, in the mixed system with NO₃⁻-N: NO²⁻-N of 2:1, 1:1 and 1:2. When the NH₄⁺-N: NO₃⁻-N ratios were 2: 1 , 1: 1 , 1: 2, the nitrogen removal efficiencies were all 100% . When the NH₄⁺-N:NO₂⁻-N ratios were 2:1,1:1,1:2, the nitrogen removal efficiencies were 90.43%, 92.79% and 99.96%, respectively. They were higher than those with single nitrogen source. As a result, strain y3 had good nitrogen removal performance in high saline wastewater treatment.

  12. Special role of corn flour as an ideal carbon source for aerobic denitrification with minimized nitrous oxide emission.

    PubMed

    Zhu, Shuangyue; Zheng, Maosheng; Li, Can; Gui, Mengyao; Chen, Qian; Ni, Jinren

    2015-06-01

    Much effort has been made for reducing nitrous oxide (N2O) emission in wastewater treatment processes. This paper presents an interesting way to minimize N2O in aerobic denitrification by strain Pseudomonas stutzeri PCN-1 with help of corn flour as cheaper additional carbon source. Experimental results showed that maximal N2O accumulation by strain PCN-1 was only 0.02% of removed nitrogen if corn flour was used as sole carbon source, which was significantly reduced by 52.07-99.81% comparing with others such as succinate, glucose, acetate and citrate. Sustained release of reducing sugar from starch and continuous expression of nosZ coding for N2O reductase contributed to the special role of corn flour as the ideal carbon source for strain PCN-1. Further experiments in sequencing batch reactors (SBRs) demonstrated similarly efficient nitrogen removal with much less N2O emission due to synergy of the novel strain and activated sludge, which was then confirmed by quantitative PCR analysis. PMID:25802047

  13. [Isolation, Identification and Nitrogen Removal Characteristics of a Heterotrophic Nitrification-Aerobic Denitrification Strain y3 Isolated from Marine Environment].

    PubMed

    Sun, Qing-hua; Yu, De-shuang; Zhang, Pei-yu; Lin, Xue-zheng; Xu, Guang-yao; Li, Jin

    2016-03-15

    A heterotrophic nitrification--aerobic denitrification bacterium named y3 was isolated from the sludge of Jiaozhou Bay using the enrichment medium with seawater as the matrix. It was identified as Pseudomonas sp. based on the morphological observation, physiological experiments and sequence analysis of 16S rRNA. The experiment results showed that the optimal carbon resource was sodium citrate, the optimal pH was 7.0, and the optimal C/N was 13. The strain could use NH₄Cl, NaNO₂ and KNO₃ as sole nitrogen source, and the removal efficiencies were 98.69%, 78.38% and 72.95% within 20 hours, respectively. There was no nitrate and nitrite accumulation during the heterotrophic nitrification process. Within 20 hours, the nitrogen removal efficiencies were 99.56%, 99.75% and 99.41%, respectively, in the mixed system with NO₃⁻-N: NO²⁻-N of 2:1, 1:1 and 1:2. When the NH₄⁺-N: NO₃⁻-N ratios were 2: 1 , 1: 1 , 1: 2, the nitrogen removal efficiencies were all 100% . When the NH₄⁺-N:NO₂⁻-N ratios were 2:1,1:1,1:2, the nitrogen removal efficiencies were 90.43%, 92.79% and 99.96%, respectively. They were higher than those with single nitrogen source. As a result, strain y3 had good nitrogen removal performance in high saline wastewater treatment. PMID:27337905

  14. [Identification of a high ammonia nitrogen tolerant and heterotrophic nitrification-aerobic denitrification bacterial strain TN-14 and its nitrogen removal capabilities].

    PubMed

    Xin, Xin; Yao, Li; Lu, Lei; Leng, Lu; Zhou, Ying-Qin; Guo, Jun-Yuan

    2014-10-01

    A new strain of high ammonia nitrogen tolerant and heterotrophic nitrification-aerobic denitrification bacterium TN-14 was isolated from the environment. Its physiological and biochemical characteristics and molecular identification, performences of heterotrophic nitrification-aerobic, the abilities of resistance to ammonia nitrogen as well as the decontamination abilities were studied, respectively. It was preliminary identified as Acinetobacter sp. according to its physiological and biochemical characteristics and molecular identification results. In heterotrophic nitrification system, the ammonia nitrogen and total nitrogen removal rate of the bacterial strain TN-14 could reach 97.13% and 93.53% within 24 h. In nitrates denitrification system, the nitrate concentration could decline from 94.24 mg · L(-1) to 39.32 mg · L(-1) within 24 h, where the removal rate was 58.28% and the denitrification rate was 2.28 mg · (L · h)(-1); In nitrite denitrification systems, the initial concentration of nitrite could be declined from 97.78 mg · L(-1) to 21.30 mg x L(-1), with a nitrite nitrogen removal rate of 78.22%, and a denitrification rate of 2.55 mg · (L· h)(-1). Meanwhile, strain TN-14 had the capability of flocculant production, and the flocculating rate could reach 94.74% when its fermentation liquid was used to treat 0.4% kaolin suspension. Strain TN-14 could grow at an ammonia nitrogen concentration as high as 1200 mg · L(-1). In the aspect of actual piggery wastewater treatment by strain TN-14, the removal rate of COD, ammonia nitrogen, TN and TP cloud reached 85.30%, 65.72%, 64.86% and 79.41%, respectively. Strain TN-14 has a good application prospect in biological treatment of real high- ammonia wastewater. PMID:25693403

  15. [Identification of a high ammonia nitrogen tolerant and heterotrophic nitrification-aerobic denitrification bacterial strain TN-14 and its nitrogen removal capabilities].

    PubMed

    Xin, Xin; Yao, Li; Lu, Lei; Leng, Lu; Zhou, Ying-Qin; Guo, Jun-Yuan

    2014-10-01

    A new strain of high ammonia nitrogen tolerant and heterotrophic nitrification-aerobic denitrification bacterium TN-14 was isolated from the environment. Its physiological and biochemical characteristics and molecular identification, performences of heterotrophic nitrification-aerobic, the abilities of resistance to ammonia nitrogen as well as the decontamination abilities were studied, respectively. It was preliminary identified as Acinetobacter sp. according to its physiological and biochemical characteristics and molecular identification results. In heterotrophic nitrification system, the ammonia nitrogen and total nitrogen removal rate of the bacterial strain TN-14 could reach 97.13% and 93.53% within 24 h. In nitrates denitrification system, the nitrate concentration could decline from 94.24 mg · L(-1) to 39.32 mg · L(-1) within 24 h, where the removal rate was 58.28% and the denitrification rate was 2.28 mg · (L · h)(-1); In nitrite denitrification systems, the initial concentration of nitrite could be declined from 97.78 mg · L(-1) to 21.30 mg x L(-1), with a nitrite nitrogen removal rate of 78.22%, and a denitrification rate of 2.55 mg · (L· h)(-1). Meanwhile, strain TN-14 had the capability of flocculant production, and the flocculating rate could reach 94.74% when its fermentation liquid was used to treat 0.4% kaolin suspension. Strain TN-14 could grow at an ammonia nitrogen concentration as high as 1200 mg · L(-1). In the aspect of actual piggery wastewater treatment by strain TN-14, the removal rate of COD, ammonia nitrogen, TN and TP cloud reached 85.30%, 65.72%, 64.86% and 79.41%, respectively. Strain TN-14 has a good application prospect in biological treatment of real high- ammonia wastewater.

  16. A biochemical approach to study the role of the terminal oxidases in aerobic respiration in Shewanella oneidensis MR-1.

    PubMed

    Le Laz, Sébastien; Kpebe, Arlette; Bauzan, Marielle; Lignon, Sabrina; Rousset, Marc; Brugna, Myriam

    2014-01-01

    The genome of the facultative anaerobic γ-proteobacterium Shewanella oneidensis MR-1 encodes for three terminal oxidases: a bd-type quinol oxidase and two heme-copper oxidases, a A-type cytochrome c oxidase and a cbb 3-type oxidase. In this study, we used a biochemical approach and directly measured oxidase activities coupled to mass-spectrometry analysis to investigate the physiological role of the three terminal oxidases under aerobic and microaerobic conditions. Our data revealed that the cbb 3-type oxidase is the major terminal oxidase under aerobic conditions while both cbb 3-type and bd-type oxidases are involved in respiration at low-O2 tensions. On the contrary, the low O2-affinity A-type cytochrome c oxidase was not detected in our experimental conditions even under aerobic conditions and would therefore not be required for aerobic respiration in S. oneidensis MR-1. In addition, the deduced amino acid sequence suggests that the A-type cytochrome c oxidase is a ccaa 3-type oxidase since an uncommon extra-C terminal domain contains two c-type heme binding motifs. The particularity of the aerobic respiratory pathway and the physiological implication of the presence of a ccaa 3-type oxidase in S. oneidensis MR-1 are discussed.

  17. Linkages between denitrification and dissolved organicmatter quality, Boulder Creek watershed, Colorado

    USGS Publications Warehouse

    Barnes, Rebecca T.; Smith, Richard L.; Aiken, George R.

    2012-01-01

    Dissolved organic matter (DOM) fuels the majority of in-stream microbial processes, including the removal of nitrate via denitrification. However, little is known about how the chemical composition of DOM influences denitrification rates. Water and sediment samples were collected across an ecosystem gradient, spanning the alpine to plains, in central Colorado to determine whether the chemical composition of DOM was related to denitrification rates. Laboratory bioassays measured denitrification potentials using the acetylene block technique and carbon mineralization via aerobic bioassays, while organic matter characteristics were evaluated using spectroscopic and fractionation methods. Denitrification potentials under ambient and elevated nitrate concentrations were strongly correlated with aerobic respiration rates and the percent mineralized carbon, suggesting that information about the aerobic metabolism of a system can provide valuable insight regarding the ability of the system to additionally reduce nitrate. Multiple linear regressions (MLR) revealed that under elevated nitrate concentrations denitrification potentials were positively related to the presence of protein-like fluorophores and negatively related to more aromatic and oxidized fractions of the DOM pool. Using MLR, the chemical composition of DOM, carbon, and nitrate concentrations explained 70% and 78% of the observed variability in denitrification potential under elevated and ambient nitrate conditions, respectively. Thus, it seems likely that DOM optical properties could help to improve predictions of nitrate removal in the environment. Finally, fluorescence measurements revealed that bacteria used both protein and humic-like organic molecules during denitrification providing further evidence that larger, more aromatic molecules are not necessarily recalcitrant in the environment.

  18. Correlation of denitrification-accepted fraction of electrons with NAD(P)H fluorescence for Pseudomonas aeruginosa performing simultaneous denitrification and respiration at extremely low dissolved oxygen conditions.

    PubMed

    Chen, Fan; Xia, Qing; Ju, Lu-Kwang

    2004-01-01

    In cystic fibrosis airway infection, Pseudomonas aeruginosa forms a microaerobic biofilm and undergoes significant physiological changes. It is important to understand the bacterium's metabolism at microaerobic conditions. In this work, the culture properties and two indicators (the denitrification-accepted e- fraction and an NAD(P)H fluorescence fraction) for the culture's "fractional approach" to a fully anaerobic denitrifying state were examined in continuous cultures with practically zero DO but different aeration rates. With decreasing aeration, specific OUR decreased while specific NAR and NIR increased and kept Y(ATP/S) relatively constant. P. aeruginosa thus appeared to effectively compensate for energy generation at microaerobic conditions with denitrification. At the studied dilution rate of 0.06 h(-1), the maximum specific OUR was 2.8 mmol O2/g cells-h and the Monod constant for DO, in the presence of nitrate, was extremely low (<0.001 mg/L). The cell yield Y(X/S) increased significantly (from 0.24 to 0.34) with increasing aeration, attributed to a roughly opposite trend of Y(ATP/X) (ATP generation required for cell growth). As for the denitrification-accepted e- fraction and the fluorescence fraction, both decreased with increasing aeration as expected. The two fractions, however, were not directly proportional. The fluorescence fraction changed more rapidly than the e- fraction at very low aeration rates, whereas the opposite was true at higher aeration. The results demonstrated the feasibility of using online NAD(P)H fluorescence to monitor sensitive changes of cellular physiology and provided insights to the shift of e- -accepting mechanisms of P. aeruginosa under microaerobic conditions.

  19. Partitioning of Respiration in an Animal-Algal Symbiosis: Implications for Different Aerobic Capacity between Symbiodinium spp.

    PubMed

    Hawkins, Thomas D; Hagemeyer, Julia C G; Hoadley, Kenneth D; Marsh, Adam G; Warner, Mark E

    2016-01-01

    Cnidarian-dinoflagellate symbioses are ecologically important and the subject of much investigation. However, our understanding of critical aspects of symbiosis physiology, such as the partitioning of total respiration between the host and symbiont, remains incomplete. Specifically, we know little about how the relationship between host and symbiont respiration varies between different holobionts (host-symbiont combinations). We applied molecular and biochemical techniques to investigate aerobic respiratory capacity in naturally symbiotic Exaiptasia pallida sea anemones, alongside animals infected with either homologous ITS2-type A4 Symbiodinium or a heterologous isolate of Symbiodinium minutum (ITS2-type B1). In naturally symbiotic anemones, host, symbiont, and total holobiont mitochondrial citrate synthase (CS) enzyme activity, but not host mitochondrial copy number, were reliable predictors of holobiont respiration. There was a positive association between symbiont density and host CS specific activity (mg protein(-1)), and a negative correlation between host- and symbiont CS specific activities. Notably, partitioning of total CS activity between host and symbiont in this natural E. pallida population was significantly different to the host/symbiont biomass ratio. In re-infected anemones, we found significant between-holobiont differences in the CS specific activity of the algal symbionts. Furthermore, the relationship between the partitioning of total CS activity and the host/symbiont biomass ratio differed between holobionts. These data have broad implications for our understanding of cnidarian-algal symbiosis. Specifically, the long-held assumption of equivalency between symbiont/host biomass and respiration ratios can result in significant overestimation of symbiont respiration and potentially erroneous conclusions regarding the percentage of carbon translocated to the host. The interspecific variability in symbiont aerobic capacity provides further evidence

  20. Partitioning of Respiration in an Animal-Algal Symbiosis: Implications for Different Aerobic Capacity between Symbiodinium spp.

    PubMed Central

    Hawkins, Thomas D.; Hagemeyer, Julia C. G.; Hoadley, Kenneth D.; Marsh, Adam G.; Warner, Mark E.

    2016-01-01

    Cnidarian-dinoflagellate symbioses are ecologically important and the subject of much investigation. However, our understanding of critical aspects of symbiosis physiology, such as the partitioning of total respiration between the host and symbiont, remains incomplete. Specifically, we know little about how the relationship between host and symbiont respiration varies between different holobionts (host-symbiont combinations). We applied molecular and biochemical techniques to investigate aerobic respiratory capacity in naturally symbiotic Exaiptasia pallida sea anemones, alongside animals infected with either homologous ITS2-type A4 Symbiodinium or a heterologous isolate of Symbiodinium minutum (ITS2-type B1). In naturally symbiotic anemones, host, symbiont, and total holobiont mitochondrial citrate synthase (CS) enzyme activity, but not host mitochondrial copy number, were reliable predictors of holobiont respiration. There was a positive association between symbiont density and host CS specific activity (mg protein−1), and a negative correlation between host- and symbiont CS specific activities. Notably, partitioning of total CS activity between host and symbiont in this natural E. pallida population was significantly different to the host/symbiont biomass ratio. In re-infected anemones, we found significant between-holobiont differences in the CS specific activity of the algal symbionts. Furthermore, the relationship between the partitioning of total CS activity and the host/symbiont biomass ratio differed between holobionts. These data have broad implications for our understanding of cnidarian-algal symbiosis. Specifically, the long-held assumption of equivalency between symbiont/host biomass and respiration ratios can result in significant overestimation of symbiont respiration and potentially erroneous conclusions regarding the percentage of carbon translocated to the host. The interspecific variability in symbiont aerobic capacity provides further evidence

  1. Aerobic respiration metabolism in lactic acid bacteria and uses in biotechnology.

    PubMed

    Pedersen, Martin B; Gaudu, Philippe; Lechardeur, Delphine; Petit, Marie-Agnès; Gruss, Alexandra

    2012-01-01

    The lactic acid bacteria (LAB) are essential for food fermentations and their impact on gut physiology and health is under active exploration. In addition to their well-studied fermentation metabolism, many species belonging to this heterogeneous group are genetically equipped for respiration metabolism. In LAB, respiration is activated by exogenous heme, and for some species, heme and menaquinone. Respiration metabolism increases growth yield and improves fitness. In this review, we aim to present the basics of respiration metabolism in LAB, its genetic requirements, and the dramatic physiological changes it engenders. We address the question of how LAB acquired the genetic equipment for respiration. We present at length how respiration can be used advantageously in an industrial setting, both in the context of food-related technologies and in novel potential applications.

  2. Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4.1.

    PubMed

    Arai, Hiroyuki; Roh, Jung Hyeob; Kaplan, Samuel

    2008-01-01

    Rhodobacter sphaeroides 2.4.1 is a facultative photosynthetic anaerobe that grows by anoxygenic photosynthesis under anaerobic-light conditions. Changes in energy generation pathways under photosynthetic and aerobic respiratory conditions are primarily controlled by oxygen tensions. In this study, we performed time series microarray analyses to investigate transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration. Major changes in gene expression profiles occurred in the initial 15 min after the shift from anaerobic-light to aerobic-dark conditions, with changes continuing to occur up to 4 hours postshift. Those genes whose expression levels changed significantly during the time series were grouped into three major classes by clustering analysis. Class I contained genes, such as that for the aa3 cytochrome oxidase, whose expression levels increased after the shift. Class II contained genes, such as those for the photosynthetic apparatus and Calvin cycle enzymes, whose expression levels decreased after the shift. Class III contained genes whose expression levels temporarily increased during the time series. Many genes for metabolism and transport of carbohydrates or lipids were significantly induced early during the transition, suggesting that those endogenous compounds were initially utilized as carbon sources. Oxidation of those compounds might also be required for maintenance of redox homeostasis after exposure to oxygen. Genes for the repair of protein and sulfur groups and uptake of ferric iron were temporarily upregulated soon after the shift, suggesting they were involved in a response to oxidative stress. The flagellar-biosynthesis genes were expressed in a hierarchical manner at 15 to 60 min after the shift. Numerous transporters were induced at various time points, suggesting that the cellular composition went through significant changes during the transition from anaerobic photosynthesis to aerobic respiration

  3. Lateral Transfer of the Denitrification Pathway Genes among Thermus thermophilus Strains▿

    PubMed Central

    Alvarez, Laura; Bricio, Carlos; José Gómez, Manuel; Berenguer, José

    2011-01-01

    Nitrate respiration is a common and strain-specific property in Thermus thermophilus encoded by the nitrate respiration conjugative element (NCE) that can be laterally transferred by conjugation. In contrast, nitrite respiration and further denitrification steps are restricted to a few isolates of this species. These later steps of the denitrification pathway are under the regulatory control of an NCE-encoded transcription factor, but nothing is known about their coding sequences or its putative genetic linkage to the NCE. In this study we examine the genetic linkage between nitrate and nitrite respiration through lateral gene transfer (LGT) assays and describe a cluster of genes encoding the nitrite-nitric oxide respiration in T. thermophilus PRQ25. We show that the whole denitrification pathway can be transferred from the denitrificant strain PRQ25 to an aerobic strain, HB27, and that the genes coding for nitrite and nitric oxide respiration are encoded near the NCE. Sequence data from the draft genome of PRQ25 confirmed these results and allowed us to describe the most compact nor-nir cluster known thus far and to demonstrate the expression and activities of the encoded enzymes in the HB27 denitrificant derivatives obtained by LGT. We conclude that this NCE nor-nir supercluster constitutes a whole denitrification island that can be spread by lateral transfer among Thermus thermophilus strains. PMID:21169443

  4. Aerobically respiring prokaryotic strains exhibit a broader temperature–pH–salinity space for cell division than anaerobically respiring and fermentative strains

    PubMed Central

    Harrison, Jesse P.; Dobinson, Luke; Freeman, Kenneth; McKenzie, Ross; Wyllie, Dale; Nixon, Sophie L.; Cockell, Charles S.

    2015-01-01

    Biological processes on the Earth operate within a parameter space that is constrained by physical and chemical extremes. Aerobic respiration can result in adenosine triphosphate yields up to over an order of magnitude higher than those attained anaerobically and, under certain conditions, may enable microbial multiplication over a broader range of extremes than other modes of catabolism. We employed growth data published for 241 prokaryotic strains to compare temperature, pH and salinity values for cell division between aerobically and anaerobically metabolizing taxa. Isolates employing oxygen as the terminal electron acceptor exhibited a considerably more extensive three-dimensional phase space for cell division (90% of the total volume) than taxa using other inorganic substrates or organic compounds as the electron acceptor (15% and 28% of the total volume, respectively), with all groups differing in their growth characteristics. Understanding the mechanistic basis of these differences will require integration of research into microbial ecology, physiology and energetics, with a focus on global-scale processes. Critical knowledge gaps include the combined impacts of diverse stress parameters on Gibbs energy yields and rates of microbial activity, interactions between cellular energetics and adaptations to extremes, and relating laboratory-based data to in situ limits for cell division. PMID:26354829

  5. Aerobically respiring prokaryotic strains exhibit a broader temperature-pH-salinity space for cell division than anaerobically respiring and fermentative strains.

    PubMed

    Harrison, Jesse P; Dobinson, Luke; Freeman, Kenneth; McKenzie, Ross; Wyllie, Dale; Nixon, Sophie L; Cockell, Charles S

    2015-09-01

    Biological processes on the Earth operate within a parameter space that is constrained by physical and chemical extremes. Aerobic respiration can result in adenosine triphosphate yields up to over an order of magnitude higher than those attained anaerobically and, under certain conditions, may enable microbial multiplication over a broader range of extremes than other modes of catabolism. We employed growth data published for 241 prokaryotic strains to compare temperature, pH and salinity values for cell division between aerobically and anaerobically metabolizing taxa. Isolates employing oxygen as the terminal electron acceptor exhibited a considerably more extensive three-dimensional phase space for cell division (90% of the total volume) than taxa using other inorganic substrates or organic compounds as the electron acceptor (15% and 28% of the total volume, respectively), with all groups differing in their growth characteristics. Understanding the mechanistic basis of these differences will require integration of research into microbial ecology, physiology and energetics, with a focus on global-scale processes. Critical knowledge gaps include the combined impacts of diverse stress parameters on Gibbs energy yields and rates of microbial activity, interactions between cellular energetics and adaptations to extremes, and relating laboratory-based data to in situ limits for cell division. PMID:26354829

  6. Aerobically respiring prokaryotic strains exhibit a broader temperature-pH-salinity space for cell division than anaerobically respiring and fermentative strains.

    PubMed

    Harrison, Jesse P; Dobinson, Luke; Freeman, Kenneth; McKenzie, Ross; Wyllie, Dale; Nixon, Sophie L; Cockell, Charles S

    2015-09-01

    Biological processes on the Earth operate within a parameter space that is constrained by physical and chemical extremes. Aerobic respiration can result in adenosine triphosphate yields up to over an order of magnitude higher than those attained anaerobically and, under certain conditions, may enable microbial multiplication over a broader range of extremes than other modes of catabolism. We employed growth data published for 241 prokaryotic strains to compare temperature, pH and salinity values for cell division between aerobically and anaerobically metabolizing taxa. Isolates employing oxygen as the terminal electron acceptor exhibited a considerably more extensive three-dimensional phase space for cell division (90% of the total volume) than taxa using other inorganic substrates or organic compounds as the electron acceptor (15% and 28% of the total volume, respectively), with all groups differing in their growth characteristics. Understanding the mechanistic basis of these differences will require integration of research into microbial ecology, physiology and energetics, with a focus on global-scale processes. Critical knowledge gaps include the combined impacts of diverse stress parameters on Gibbs energy yields and rates of microbial activity, interactions between cellular energetics and adaptations to extremes, and relating laboratory-based data to in situ limits for cell division.

  7. [Analysis of the Microbial Community Structure in Continuous Flow Reactor Enhanced by Heterotrophic Nitrification and Aerobic Denitrification Bacterium Burkholderia sp. YX02].

    PubMed

    Shao, Ji-lun; Cao, Gang; Li, Zi-hui; Huang, Zheng-zheng; Luo, Kai; Mo, Ce-hui

    2016-02-15

    To reveal the dynamic succession of microbial community structure along with time in bio-denitrification reactor, a continuous flow reactor containing immobilized heterotrophic nitrification-aerobic denitrification bacterium Burkholderia sp. YX02 was taken as a model. The microbial community structure in the bioreactor was analyzed by PCR-DCGE, and its correlations with environmental factors such as pH, NH4+ -N, NO2- -N, NO3- -N and COD were simultaneously investigated. The results showed that the microbial community was relatively rich during the early stage of 18 days. The similarity of community structure in different stages was not orderly declining with the operation. In addition, the structural similarity in adjacent stages firstly increased, then decreased, and eventually tended to be stable. Shannon-Wiener index firstly descended significantly, and then ascended with new microbial community emerging at the later stage. UPGMA clustering analysis roughly divided the process into three periods with certain relationship. Principal component analysis showed that during the operation of the bioreactor predominant bacterial community formed steadily and new microbial community dominated by Burkholderia sp. YX02 emerged at the later stage of the operation. Canonical correspondence analysis certificated that the structure of microbial community was most obviously affected by NO2- -N, followed by NO3- -N, NH4+ -N and COD, and pH had the least effect. PMID:27363154

  8. Isolation of high-salinity-tolerant bacterial strains, Enterobacter sp., Serratia sp., Yersinia sp., for nitrification and aerobic denitrification under cyanogenic conditions.

    PubMed

    Mpongwana, N; Ntwampe, S K O; Mekuto, L; Akinpelu, E A; Dyantyi, S; Mpentshu, Y

    2016-01-01

    Cyanides (CN(-)) and soluble salts could potentially inhibit biological processes in wastewater treatment plants (WWTPs), such as nitrification and denitrification. Cyanide in wastewater can alter metabolic functions of microbial populations in WWTPs, thus significantly inhibiting nitrifier and denitrifier metabolic processes, rendering the water treatment processes ineffective. In this study, bacterial isolates that are tolerant to high salinity conditions, which are capable of nitrification and aerobic denitrification under cyanogenic conditions, were isolated from a poultry slaughterhouse effluent. Three of the bacterial isolates were found to be able to oxidise NH(4)-N in the presence of 65.91 mg/L of free cyanide (CN(-)) under saline conditions, i.e. 4.5% (w/v) NaCl. The isolates I, H and G, were identified as Enterobacter sp., Yersinia sp. and Serratia sp., respectively. Results showed that 81% (I), 71% (G) and 75% (H) of 400 mg/L NH(4)-N was biodegraded (nitrification) within 72 h, with the rates of biodegradation being suitably described by first order reactions, with rate constants being: 4.19 h(-1) (I), 4.21 h(-1) (H) and 3.79 h(-1) (G), respectively, with correlation coefficients ranging between 0.82 and 0.89. Chemical oxygen demand (COD) removal rates were 38% (I), 42% (H) and 48% (G), over a period of 168 h with COD reduction being highest at near neutral pH. PMID:27148718

  9. Mitochondrial aerobic respiration is activated during hair follicle stem cell differentiation, and its dysfunction retards hair regeneration.

    PubMed

    Tang, Yan; Luo, Binping; Deng, Zhili; Wang, Ben; Liu, Fangfen; Li, Jinmao; Shi, Wei; Xie, Hongfu; Hu, Xingwang; Li, Ji

    2016-01-01

    Background. Emerging research revealed the essential role of mitochondria in regulating stem/progenitor cell differentiation of neural progenitor cells, mesenchymal stem cells and other stem cells through reactive oxygen species (ROS), Notch or other signaling pathway. Inhibition of mitochondrial protein synthesis results in hair loss upon injury. However, alteration of mitochondrial morphology and metabolic function during hair follicle stem cells (HFSCs) differentiation and how they affect hair regeneration has not been elaborated upon. Methods. We compared the difference in mitochondrial morphology and activity between telogen bulge cells and anagen matrix cells. Expression levels of mitochondrial ROS and superoxide dismutase 2 (SOD2) were measured to evaluate redox balance. In addition, the level of pyruvate dehydrogenase kinase (PDK) and pyruvate dehydrogenase (PDH) were estimated to present the change in energetic metabolism during differentiation. To explore the effect of the mitochondrial metabolism on regulating hair regeneration, hair growth was observed after application of a mitochondrial respiratory inhibitor upon hair plucking. Results. During HFSCs differentiation, mitochondria became elongated with more abundant organized cristae and showed higher activity in differentiated cells. SOD2 was enhanced for redox balance with relatively stable ROS levels in differentiated cells. PDK increased in HFSCs while differentiated cells showed enhanced PDH, indicating that respiration switched from glycolysis to oxidative phosphorylation during differentiation. Inhibiting mitochondrial respiration in differentiated hair follicle cells upon hair plucking repressed hair regeneration in vivo. Conclusions. Upon HFSCs differentiation, mitochondria are elongated with more abundant cristae and show higher activity, accompanying with activated aerobic respiration in differentiated cells for higher energy supply. Also, dysfunction of mitochondrial respiration delays hair

  10. Mitochondrial aerobic respiration is activated during hair follicle stem cell differentiation, and its dysfunction retards hair regeneration

    PubMed Central

    Tang, Yan; Luo, Binping; Deng, Zhili; Wang, Ben; Liu, Fangfen; Li, Jinmao; Shi, Wei; Xie, Hongfu; Hu, Xingwang

    2016-01-01

    Background. Emerging research revealed the essential role of mitochondria in regulating stem/progenitor cell differentiation of neural progenitor cells, mesenchymal stem cells and other stem cells through reactive oxygen species (ROS), Notch or other signaling pathway. Inhibition of mitochondrial protein synthesis results in hair loss upon injury. However, alteration of mitochondrial morphology and metabolic function during hair follicle stem cells (HFSCs) differentiation and how they affect hair regeneration has not been elaborated upon. Methods. We compared the difference in mitochondrial morphology and activity between telogen bulge cells and anagen matrix cells. Expression levels of mitochondrial ROS and superoxide dismutase 2 (SOD2) were measured to evaluate redox balance. In addition, the level of pyruvate dehydrogenase kinase (PDK) and pyruvate dehydrogenase (PDH) were estimated to present the change in energetic metabolism during differentiation. To explore the effect of the mitochondrial metabolism on regulating hair regeneration, hair growth was observed after application of a mitochondrial respiratory inhibitor upon hair plucking. Results. During HFSCs differentiation, mitochondria became elongated with more abundant organized cristae and showed higher activity in differentiated cells. SOD2 was enhanced for redox balance with relatively stable ROS levels in differentiated cells. PDK increased in HFSCs while differentiated cells showed enhanced PDH, indicating that respiration switched from glycolysis to oxidative phosphorylation during differentiation. Inhibiting mitochondrial respiration in differentiated hair follicle cells upon hair plucking repressed hair regeneration in vivo. Conclusions. Upon HFSCs differentiation, mitochondria are elongated with more abundant cristae and show higher activity, accompanying with activated aerobic respiration in differentiated cells for higher energy supply. Also, dysfunction of mitochondrial respiration delays hair

  11. Aerobic microbial respiration in 86-million-year-old deep-sea red clay.

    PubMed

    Røy, Hans; Kallmeyer, Jens; Adhikari, Rishi Ram; Pockalny, Robert; Jørgensen, Bo Barker; D'Hondt, Steven

    2012-05-18

    Microbial communities can subsist at depth in marine sediments without fresh supply of organic matter for millions of years. At threshold sedimentation rates of 1 millimeter per 1000 years, the low rates of microbial community metabolism in the North Pacific Gyre allow sediments to remain oxygenated tens of meters below the sea floor. We found that the oxygen respiration rates dropped from 10 micromoles of O(2) liter(-1) year(-1) near the sediment-water interface to 0.001 micromoles of O(2) liter(-1) year(-1) at 30-meter depth within 86 million-year-old sediment. The cell-specific respiration rate decreased with depth but stabilized at around 10(-3) femtomoles of O(2) cell(-1) day(-1) 10 meters below the seafloor. This result indicated that the community size is controlled by the rate of carbon oxidation and thereby by the low available energy flux. PMID:22605778

  12. High-efficient nitrogen removal by coupling enriched autotrophic-nitrification and aerobic-denitrification consortiums at cold temperature.

    PubMed

    Zou, Shiqiang; Yao, Shuo; Ni, Jinren

    2014-06-01

    This study paid particular attention to total nitrogen removal at low temperature (10°C) by excellent coupling of enriched autotrophic nitrifying and heterotrophic denitrifying consortiums at sole aerobic condition. The maximum specific nitrifying rate of the nitrifying consortium reached 8.85mgN/(gSSh). Further test in four identical lab-scale sequencing batch reactors demonstrated its excellent performance for bioaugmentation in potential applications. On the other hand, the aerobic denitrifying consortium could achieve a specific denitrifying rate of 32.93mgN/(gSSh) under dissolved oxygen of 1.0-1.5mg/L at 10°C. Coupling both kinds of consortiums was proved very successful for a perfect total nitrogen (TN) removal at COD/N of 4 and dissolved oxygen of 1.5-4.5mg/L, which was hardly reached by any single consortium reported previously. The encouraging results from coupling aerobic consortiums implied a huge potential in practical treatment of low-strength domestic wastewater (200-300mg/L COD) during wintertime.

  13. High Concentrations of H2O2 Make Aerobic Glycolysis Energetically More Favorable for Cellular Respiration.

    PubMed

    Molavian, Hamid R; Kohandel, Mohammad; Sivaloganathan, Sivabal

    2016-01-01

    Since the original observation of the Warburg Effect in cancer cells, over 8 decades ago, the major question of why aerobic glycolysis is favored over oxidative phosphorylation has remained unresolved. An understanding of this phenomenon may well be the key to the development of more effective cancer therapies. In this paper, we use a semi-empirical method to throw light on this puzzle. We show that aerobic glycolysis is in fact energetically more favorable than oxidative phosphorylation for concentrations of peroxide (H2O2) above some critical threshold value. The fundamental reason for this is the activation and high engagement of the pentose phosphate pathway (PPP) in response to the production of reactive oxygen species (ROS) H2O2 by mitochondria and the high concentration of H2O2 (produced by mitochondria and other sources). This makes oxidative phosphorylation an inefficient source of energy since it leads (despite high levels of ATP production) to a concomitant high energy consumption in order to respond to the hazardous waste products resulting from cellular processes associated with this metabolic pathway. We also demonstrate that the high concentration of H2O2 results in an increased glucose consumption, and also increases the lactate production in the case of glycolysis.

  14. High Concentrations of H2O2 Make Aerobic Glycolysis Energetically More Favorable for Cellular Respiration

    PubMed Central

    Molavian, Hamid R.; Kohandel, Mohammad; Sivaloganathan, Sivabal

    2016-01-01

    Since the original observation of the Warburg Effect in cancer cells, over 8 decades ago, the major question of why aerobic glycolysis is favored over oxidative phosphorylation has remained unresolved. An understanding of this phenomenon may well be the key to the development of more effective cancer therapies. In this paper, we use a semi-empirical method to throw light on this puzzle. We show that aerobic glycolysis is in fact energetically more favorable than oxidative phosphorylation for concentrations of peroxide (H2O2) above some critical threshold value. The fundamental reason for this is the activation and high engagement of the pentose phosphate pathway (PPP) in response to the production of reactive oxygen species (ROS) H2O2 by mitochondria and the high concentration of H2O2 (produced by mitochondria and other sources). This makes oxidative phosphorylation an inefficient source of energy since it leads (despite high levels of ATP production) to a concomitant high energy consumption in order to respond to the hazardous waste products resulting from cellular processes associated with this metabolic pathway. We also demonstrate that the high concentration of H2O2 results in an increased glucose consumption, and also increases the lactate production in the case of glycolysis. PMID:27601999

  15. High Concentrations of H2O2 Make Aerobic Glycolysis Energetically More Favorable for Cellular Respiration.

    PubMed

    Molavian, Hamid R; Kohandel, Mohammad; Sivaloganathan, Sivabal

    2016-01-01

    Since the original observation of the Warburg Effect in cancer cells, over 8 decades ago, the major question of why aerobic glycolysis is favored over oxidative phosphorylation has remained unresolved. An understanding of this phenomenon may well be the key to the development of more effective cancer therapies. In this paper, we use a semi-empirical method to throw light on this puzzle. We show that aerobic glycolysis is in fact energetically more favorable than oxidative phosphorylation for concentrations of peroxide (H2O2) above some critical threshold value. The fundamental reason for this is the activation and high engagement of the pentose phosphate pathway (PPP) in response to the production of reactive oxygen species (ROS) H2O2 by mitochondria and the high concentration of H2O2 (produced by mitochondria and other sources). This makes oxidative phosphorylation an inefficient source of energy since it leads (despite high levels of ATP production) to a concomitant high energy consumption in order to respond to the hazardous waste products resulting from cellular processes associated with this metabolic pathway. We also demonstrate that the high concentration of H2O2 results in an increased glucose consumption, and also increases the lactate production in the case of glycolysis. PMID:27601999

  16. High Concentrations of H2O2 Make Aerobic Glycolysis Energetically More Favorable for Cellular Respiration

    PubMed Central

    Molavian, Hamid R.; Kohandel, Mohammad; Sivaloganathan, Sivabal

    2016-01-01

    Since the original observation of the Warburg Effect in cancer cells, over 8 decades ago, the major question of why aerobic glycolysis is favored over oxidative phosphorylation has remained unresolved. An understanding of this phenomenon may well be the key to the development of more effective cancer therapies. In this paper, we use a semi-empirical method to throw light on this puzzle. We show that aerobic glycolysis is in fact energetically more favorable than oxidative phosphorylation for concentrations of peroxide (H2O2) above some critical threshold value. The fundamental reason for this is the activation and high engagement of the pentose phosphate pathway (PPP) in response to the production of reactive oxygen species (ROS) H2O2 by mitochondria and the high concentration of H2O2 (produced by mitochondria and other sources). This makes oxidative phosphorylation an inefficient source of energy since it leads (despite high levels of ATP production) to a concomitant high energy consumption in order to respond to the hazardous waste products resulting from cellular processes associated with this metabolic pathway. We also demonstrate that the high concentration of H2O2 results in an increased glucose consumption, and also increases the lactate production in the case of glycolysis.

  17. Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota.

    PubMed

    Ravcheev, Dmitry A; Thiele, Ines

    2014-01-01

    Because of the specific anatomical and physiological properties of the human intestine, a specific oxygen gradient builds up within this organ that influences the intestinal microbiota. The intestinal microbiome has been intensively studied in recent years, and certain respiratory substrates used by gut inhabiting microbes have been shown to play a crucial role in human health. Unfortunately, a systematic analysis has not been previously performed to determine the respiratory capabilities of human gut microbes (HGM). Here, we analyzed the distribution of aerobic and anaerobic respiratory reductases in 254 HGM genomes. In addition to the annotation of known enzymes, we also predicted a novel microaerobic reductase and novel thiosulfate reductase. Based on this comprehensive assessment of respiratory reductases in the HGM, we proposed a number of exchange pathways among different bacteria involved in the reduction of various nitrogen oxides. The results significantly expanded our knowledge of HGM metabolism and interactions in bacterial communities.

  18. Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota.

    PubMed

    Ravcheev, Dmitry A; Thiele, Ines

    2014-01-01

    Because of the specific anatomical and physiological properties of the human intestine, a specific oxygen gradient builds up within this organ that influences the intestinal microbiota. The intestinal microbiome has been intensively studied in recent years, and certain respiratory substrates used by gut inhabiting microbes have been shown to play a crucial role in human health. Unfortunately, a systematic analysis has not been previously performed to determine the respiratory capabilities of human gut microbes (HGM). Here, we analyzed the distribution of aerobic and anaerobic respiratory reductases in 254 HGM genomes. In addition to the annotation of known enzymes, we also predicted a novel microaerobic reductase and novel thiosulfate reductase. Based on this comprehensive assessment of respiratory reductases in the HGM, we proposed a number of exchange pathways among different bacteria involved in the reduction of various nitrogen oxides. The results significantly expanded our knowledge of HGM metabolism and interactions in bacterial communities. PMID:25538694

  19. Remediation of nitrate-nitrogen contaminated groundwater using a pilot-scale two-layer heterotrophic-autotrophic denitrification permeable reactive barrier with spongy iron/pine bark.

    PubMed

    Huang, Guoxin; Huang, Yuanying; Hu, Hongyan; Liu, Fei; Zhang, Ying; Deng, Renwei

    2015-07-01

    A novel two-layer heterotrophic-autotrophic denitrification (HAD) permeable reactive barrier (PRB) was proposed for remediating nitrate-nitrogen contaminated groundwater in an oxygen rich environment, which has a packing structure of an upstream pine bark layer and a downstream spongy iron and river sand mixture layer. The HAD PRB involves biological deoxygenation, heterotrophic denitrification, hydrogenotrophic denitrification, and anaerobic Fe corrosion. Column and batch experiments were performed to: (1) investigate the NO3(-)-N removal and inorganic geochemistry; (2) explore the nitrogen transformation and removal mechanisms; (3) identify the hydrogenotrophic denitrification capacity; and (4) evaluate the HAD performance by comparison with other approaches. The results showed that the HAD PRB could maintain constant high NO3(-)-N removal efficiency (>91%) before 38 pore volumes (PVs) of operation (corresponding to 504d), form little or even negative NO2(-)-N during the 45 PVs, and produce low NH4(+)-N after 10 PVs. Aerobic heterotrophic bacteria played a dominant role in oxygen depletion via aerobic respiration, providing more CO2 for hydrogenotrophic denitrification. The HAD PRB significantly relied on heterotrophic denitrification. Hydrogenotrophic denitrification removed 10-20% of the initial NO3(-)-N. Effluent total organic carbon decreased from 403.44mgL(-1) at PV 1 to 9.34mgL(-1) at PV 45. Packing structure had a noticeable effect on its denitrification. PMID:25747301

  20. Remediation of nitrate-nitrogen contaminated groundwater using a pilot-scale two-layer heterotrophic-autotrophic denitrification permeable reactive barrier with spongy iron/pine bark.

    PubMed

    Huang, Guoxin; Huang, Yuanying; Hu, Hongyan; Liu, Fei; Zhang, Ying; Deng, Renwei

    2015-07-01

    A novel two-layer heterotrophic-autotrophic denitrification (HAD) permeable reactive barrier (PRB) was proposed for remediating nitrate-nitrogen contaminated groundwater in an oxygen rich environment, which has a packing structure of an upstream pine bark layer and a downstream spongy iron and river sand mixture layer. The HAD PRB involves biological deoxygenation, heterotrophic denitrification, hydrogenotrophic denitrification, and anaerobic Fe corrosion. Column and batch experiments were performed to: (1) investigate the NO3(-)-N removal and inorganic geochemistry; (2) explore the nitrogen transformation and removal mechanisms; (3) identify the hydrogenotrophic denitrification capacity; and (4) evaluate the HAD performance by comparison with other approaches. The results showed that the HAD PRB could maintain constant high NO3(-)-N removal efficiency (>91%) before 38 pore volumes (PVs) of operation (corresponding to 504d), form little or even negative NO2(-)-N during the 45 PVs, and produce low NH4(+)-N after 10 PVs. Aerobic heterotrophic bacteria played a dominant role in oxygen depletion via aerobic respiration, providing more CO2 for hydrogenotrophic denitrification. The HAD PRB significantly relied on heterotrophic denitrification. Hydrogenotrophic denitrification removed 10-20% of the initial NO3(-)-N. Effluent total organic carbon decreased from 403.44mgL(-1) at PV 1 to 9.34mgL(-1) at PV 45. Packing structure had a noticeable effect on its denitrification.

  1. Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis.

    PubMed

    Gao, Haichun; Wang, Xiaohu; Yang, Zamin K; Chen, Jingrong; Liang, Yili; Chen, Haijiang; Palzkill, Timothy; Zhou, Jizhong

    2010-12-28

    In the genome of Shewanella oneidensis, genes encoding the global regulators ArcA, Crp, and EtrA have been identified. All these proteins deviate from their counterparts in E. coli significantly in terms of functionality and regulon. It is worth investigating the involvement and relationship of these global regulators in aerobic and anaerobic respiration in S. oneidensis. In this study, the impact of the transcriptional factors ArcA, Crp, and EtrA on aerobic and anaerobic respiration in S. oneidensis were assessed. While all these proteins appeared to be functional in vivo, the importance of individual proteins in these two major biological processes differed. The ArcA transcriptional factor was critical in aerobic respiration while the Crp protein was indispensible in anaerobic respiration. Using a newly developed reporter system, it was found that expression of arcA and etrA was not influenced by growth conditions but transcription of crp was induced by removal of oxygen. An analysis of the impact of each protein on transcription of the others revealed that Crp expression was independent of the other factors whereas ArcA repressed both etrA and its own transcription while EtrA also repressed arcA transcription. Transcriptional levels of arcA in the wild type, crp, and etrA strains under either aerobic or anaerobic conditions were further validated by quantitative immunoblotting with a polyclonal antibody against ArcA. This extensive survey demonstrated that all these three global regulators are functional in S. oneidensis. In addition, the reporter system constructed in this study will facilitate in vivo transcriptional analysis of targeted promoters.

  2. Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis

    SciTech Connect

    Gao, Haichun; Wang, Xiaohu; Chen, Jingrong; Liang, Yili; Chen, Haijiang; Palzkill, Timothy; Zhou, Jizhong

    2010-01-01

    In the genome of Shewanella oneidensis, genes encoding the global regulators ArcA, Crp, and EtrA have been identified. All these proteins deviate from their counterparts in E. coli significantly in terms of functionality and regulon. It is worth investigating the involvement and relationship of these global regulators in aerobic and anaerobic respiration in S. oneidensis. In this study, the impact of the transcriptional factors ArcA, Crp, and EtrA on aerobic and anaerobic respiration in S. oneidensis were assessed. While all these proteins appeared to be functional in vivo, the importance of individual proteins in these two major biological processes differed. The ArcA transcriptional factor was critical in aerobic respiration while the Crp protein was indispensible in anaerobic respiration. Using a newly developed reporter system, it was found that expression of arcA and etrA was not influenced by growth conditions but transcription of crp was induced by removal of oxygen. An analysis of the impact of each protein on transcription of the others revealed that Crp expression was independent of the other factors whereas ArcA repressed both etrA and its own transcription while EtrA also repressed arcA transcription. Transcriptional levels of arcA in the wild type, crp, and etrA strains under either aerobic or anaerobic conditions were further validated by quantitative immunoblotting with a polyclonal antibody against ArcA. This extensive survey demonstrated that all these three global regulators are functional in S. oneidensis. In addition, the reporter system constructed in this study will facilitate in vivo transcriptional analysis of targeted promoters.

  3. cbb3-type cytochrome c oxidases, aerobic respiratory enzymes, impact the anaerobic life of Pseudomonas aeruginosa PAO1.

    PubMed

    Hamada, Masakaze; Toyofuku, Masanori; Miyano, Tomoki; Nomura, Nobuhiko

    2014-11-01

    For bacteria, many studies have focused on the role of respiratory enzymes in energy conservation; however, their effect on cell behavior is poorly understood. Pseudomonas aeruginosa can perform both aerobic respiration and denitrification. Previous studies demonstrated that cbb3-type cytochrome c oxidases that support aerobic respiration are more highly expressed in P. aeruginosa under anoxic conditions than are other aerobic respiratory enzymes. However, little is known about their role under such conditions. In this study, it was shown that cbb3 oxidases of P. aeruginosa PAO1 alter anaerobic growth, the denitrification process, and cell morphology under anoxic conditions. Furthermore, biofilm formation was promoted by the cbb3 oxidases under anoxic conditions. cbb3 oxidases led to the accumulation of nitric oxide (NO), which is produced during denitrification. Cell elongation induced by NO accumulation was reported to be required for robust biofilm formation of P. aeruginosa PAO1 under anoxic conditions. Our data show that cbb3 oxidases promote cell elongation by inducing NO accumulation during the denitrification process, which further leads to robust biofilms. Our findings show that cbb3 oxidases, which have been well studied as aerobic respiratory enzymes, are also involved in denitrification and influence the lifestyle of P. aeruginosa PAO1 under anoxic conditions.

  4. Mechanism of biological denitrification inhibition: procyanidins induce an allosteric transition of the membrane-bound nitrate reductase through membrane alteration.

    PubMed

    Bardon, Clément; Poly, Franck; Piola, Florence; Pancton, Muriel; Comte, Gilles; Meiffren, Guillaume; Haichar, Feth el Zahar

    2016-05-01

    Recently, it has been shown that procyanidins from Fallopia spp. inhibit bacterial denitrification, a phenomenon called biological denitrification inhibition (BDI). However, the mechanisms involved in such a process remain unknown. Here, we investigate the mechanisms of BDI involving procyanidins, using the model strain Pseudomonas brassicacearum NFM 421. The aerobic and anaerobic (denitrification) respiration, cell permeability and cell viability of P. brassicacearum were determined as a function of procyanidin concentration. The effect of procyanidins on the bacterial membrane was observed using transmission electronic microscopy. Bacterial growth, denitrification, NO3- and NO2-reductase activity, and the expression of subunits of NO3- (encoded by the gene narG) and NO2-reductase (encoded by the gene nirS) under NO3 or NO2 were measured with and without procyanidins. Procyanidins inhibited the denitrification process without affecting aerobic respiration at low concentrations. Procyanidins also disturbed cell membranes without affecting cell viability. They specifically inhibited NO3- but not NO2-reductase.Pseudomonas brassicacearum responded to procyanidins by over-expression of the membrane-bound NO3-reductase subunit (encoded by the gene narG). Our results suggest that procyanidins can specifically inhibit membrane-bound NO3-reductase inducing enzymatic conformational changes through membrane disturbance and that P. brassicacearum responds by over-expressing membrane-bound NO3-reductase. Our results lead the way to a better understanding of BDI. PMID:26906096

  5. Denitrification by a soil bacterium with phthalate and other aromatic compounds as substrates. [Pseudomonas sp. strain P136

    SciTech Connect

    Nozawa, T.; Maruyama, Y.

    1988-06-01

    A soil bacterium, Pseudomonas sp. strain P136, was isolated by selective enrichment for anaerobic utilization of o-phthalate through nitrate respiration. o-Phthalate, m-phthalate, p-phthalate, benzoate, cyclohex-1-ene-carboxylate, and cyclohex-3-ene-carboxylate were utilized by this strain under both aerobic and anaerobic conditions. m-Hydroxybenzoate and p-hydroxybenzoate were utilized only under anaerobic conditions. Cells grown anaerobically on one of these aromatic compounds also utilized all other aromatic compounds as substrates for denitrification without a lag period. On the other hand, cells grown on succinate utilized aromatic compounds after a lag period. Anaerobic growth on these substrates was dependent on the presence of nitrate and accompanied by the production of molecular nitrogen. The reduction of nitrite to nitrous oxide and the reduction of nitrous oxide to molecular nitrogen were also supported by anaerobic utilization of these aromatic compounds in this strain. Aerobically grown cells showed a lag period in denitrification with all substrates tested. Cells grown anaerobically on aromatic compounds also consumed oxygen. No lag period was observed for oxygen consumption during the transition period from anaerobic to aerobic conditions. Cells grown aerobically on one of these aromatic compounds were also adapted to utilize other aromatic compounds as substrates for respiration. However, cells grown on succinate showed a lag period during respiration with aromatic compounds.

  6. Denitrification by a soil bacterium with phthalate and other aromatic compounds as substrates.

    PubMed Central

    Nozawa, T; Maruyama, Y

    1988-01-01

    A soil bacterium, Pseudomonas sp. strain P136, was isolated by selective enrichment for anaerobic utilization of o-phthalate through nitrate respiration. o-Phthalate, m-phthalate, p-phthalate, benzoate, cyclohex-1-ene-carboxylate, and cyclohex-3-ene-carboxylate were utilized by this strain under both aerobic and anaerobic conditions. m-Hydroxybenzoate and p-hydroxybenzoate were utilized only under anaerobic conditions. Protocatechuate and catechol were neither utilized nor detected as metabolic intermediates during the metabolism of these aromatic compounds under both aerobic and anaerobic conditions. Cells grown anaerobically on one of these aromatic compounds also utilized all other aromatic compounds as substrates for denitrification without a lag period. On the other hand, cells grown on succinate utilized aromatic compounds after a lag period. Anaerobic growth on these substrates was dependent on the presence of nitrate and accompanied by the production of molecular nitrogen. The reduction of nitrite to nitrous oxide and the reduction of nitrous oxide to molecular nitrogen were also supported by anaerobic utilization of these aromatic compounds in this strain. Aerobically grown cells showed a lag period in denitrification with all substrates tested. Cells grown anaerobically on aromatic compounds also consumed oxygen. No lag period was observed for oxygen consumption during the transition period from anaerobic to aerobic conditions. Cells grown aerobically on one of these aromatic compounds were also adapted to utilize other aromatic compounds as substrates for respiration. However, cells grown on succinate showed a lag period during respiration with aromatic compounds. Some other characteristic properties on metabolism and regulation of this strain are also discussed for their physiological aspects. PMID:3372476

  7. Exposure to high glutamate concentration activates aerobic glycolysis but inhibits ATP-linked respiration in cultured cortical astrocytes.

    PubMed

    Shen, Yao; Tian, Yueyang; Shi, Xiaojie; Yang, Jianbo; Ouyang, Li; Gao, Jieqiong; Lu, Jianxin

    2014-08-01

    Astrocytes play a key role in removing the synaptically released glutamate from the extracellular space and maintaining the glutamate below neurotoxic level in the brain. However, high concentration of glutamate leads to toxicity in astrocytes, and the underlying mechanisms are unclear. The purpose of this study was to investigate whether energy metabolism disorder, especially impairment of mitochondrial respiration, is involved in the glutamate-induced gliotoxicity. Exposure to 10-mM glutamate for 48 h stimulated glycolysis and respiration in astrocytes. However, the increased oxygen consumption was used for proton leak and non-mitochondrial respiration, but not for oxidative phosphorylation and ATP generation. When the exposure time extended to 72 h, glycolysis was still activated for ATP generation, but the mitochondrial ATP-linked respiration of astrocytes was reduced. The glutamate-induced astrocyte damage can be mimicked by the non-metabolized substrate d-aspartate but reversed by the non-selective glutamate transporter inhibitor TBOA. In addition, the glutamate toxicity can be partially reversed by vitamin E. These findings demonstrate that changes of bioenergetic profile occur in cultured cortical astrocytes exposed to high concentration of glutamate and highlight the role of mitochondria respiration in glutamate-induced gliotoxicity in cortical astrocytes.

  8. Molecular Approaches to Studying Denitrification

    NASA Astrophysics Data System (ADS)

    Voytek, M. A.

    2001-05-01

    Denitrification is carried out by a diverse array of microbes, mainly as an alternative mode of respiration that allows the organisms to respire using oxidized N compounds instead of oxygen. A common approach in biogeochemistry to the study of the regulation of denitrification is to assess activity by mass balance of substrates and products or direct rate measurements and has intrinsically assumed resource regulation of denitrification. Reported rates can vary significantly even among ecosystems characterized by similar environmental conditions, thus indicating that direct control by abiotic factors often is not sufficient to predict denitrification rates accurately in natural environments. Alternatively, a microbiological approach would proceed with the identification of the organisms responsible and an evaluation of the effect of environmental factors on the biochemical pathways involved. Traditional studies have relied on culturing techniques, such as most probable number enrichments, and have failed to assess the role of the predominately uncultivable members of the microbial community. A combination of biogeochemical measurements and the assessment of the microbial community is necessary and becoming increasingly possible with the development and application of molecular techniques. In order to understand how the composition and physiological behavior of the microbial community affects denitrification rates, we use a suite of molecular techniques developed for phylogenetic and metabolic characterization of denitrifying communities. Molecular tools available for quantifying denitrifying bacteria and assessing their diversity and activity are summarized. Their application is illustrated with examples from marine and freshwater environments. Emerging techniques and their application to ground water studies will be discussed.

  9. Both foliar and residual applications of herbicides that inhibit amino acid biosynthesis induce alternative respiration and aerobic fermentation in pea roots.

    PubMed

    Armendáriz, O; Gil-Monreal, M; Zulet, A; Zabalza, A; Royuela, M

    2016-05-01

    The objective of this work was to ascertain whether there is a general pattern of carbon allocation and utilisation in plants following herbicide supply, independent of the site of application: sprayed on leaves or supplied to nutrient solution. The herbicides studied were the amino acid biosynthesis-inhibiting herbicides (ABIH): glyphosate, an inhibitor of aromatic amino acid biosynthesis, and imazamox, an inhibitor of branched-chain amino acid biosynthesis. All treated plants showed impaired carbon metabolism; carbohydrate accumulation was detected in both leaves and roots of the treated plants. The accumulation in roots was due to lack of use of available sugars as growth was arrested, which elicited soluble carbohydrate accumulation in the leaves due to a decrease in sink strength. Under aerobic conditions, ethanol fermentative metabolism was enhanced in roots of the treated plants. This fermentative response was not related to a change in total respiration rates or cytochrome respiratory capacity, but an increase in alternative oxidase capacity was detected. Pyruvate accumulation was detected after most of the herbicide treatments. These results demonstrate that both ABIH induce the less-efficient, ATP-producing pathways, namely fermentation and alternative respiration, by increasing the key metabolite, pyruvate. The plant response was similar not only for the two ABIH but also after foliar or residual application.

  10. Relative rates of nitric oxide and nitrous oxide production by nitrifiers, denitrifiers, and nitrate respirers

    NASA Technical Reports Server (NTRS)

    Anderson, I. C.; Levine, J. S.

    1986-01-01

    An account is given of the atmospheric chemical and photochemical effects of biogenic nitric and nitrous oxide emissions. The magnitude of the biogenic emission of NO is noted to remain uncertain. Possible soil sources of NO and N2O encompass nitrification by autotropic and heterotropic nitrifiers, denitrification by nitrifiers and denitrifiers, nitrate respiration by fermenters, and chemodenitrification. Oxygen availability is the primary determinant of these organisms' relative rates of activity. The characteristics of this major influence are presently investigated in light of the effect of oxygen partial pressure on NO and N2O production by a wide variety of common soil-nitrifying, denitrifying, and nitrate-respiring bacteria under laboratory conditions. The results obtained indicate that aerobic soils are primary sources only when there is sufficient moisture to furnish anaerobic microsites for denitrification.

  11. Teaching Aerobic Fitness Concepts.

    ERIC Educational Resources Information Center

    Sander, Allan N.; Ratliffe, Tom

    2002-01-01

    Discusses how to teach aerobic fitness concepts to elementary students. Some of the K-2 activities include location, size, and purpose of the heart and lungs; the exercise pulse; respiration rate; and activities to measure aerobic endurance. Some of the 3-6 activities include: definition of aerobic endurance; heart disease risk factors;…

  12. Hexokinase II acts through UCP3 to suppress mitochondrial reactive oxygen species production and maintain aerobic respiration.

    PubMed

    Mailloux, Ryan J; Dumouchel, Tyler; Aguer, Céline; deKemp, Rob; Beanlands, Rob; Harper, Mary-Ellen

    2011-07-15

    UCP3 (uncoupling protein-3) mitigates mitochondrial ROS (reactive oxygen species) production, but the mechanisms are poorly understood. Previous studies have also examined UCP3 effects, including decreased ROS production, during metabolic states when fatty acid oxidation is high (e.g. a fasting state). However, the role of UCP3 when carbohydrate oxidation is high (e.g. fed state) has remained largely unexplored. In the present study, we show that mitochondrial-bound HK (hexokinase) II curtails oxidative stress and enhances aerobic metabolism of glucose in the fed state in a UCP3-dependent manner. Genetic knockout or inhibition of UCP3 significantly decreased mitochondrial-bound HKII. Furthermore, UCP3 was required for the HKII-mediated decrease in mitochondrial ROS emission. Intriguingly, the UCP3-mediated modulation of mitochondria-associated HKII was only observed in cells cultured under high-glucose conditions. UCP3 was required to maintain high rates of aerobic metabolism in high-glucose-treated cells and in muscle of fed mice. Deficiency in UCP3 resulted in a metabolic shift that favoured anaerobic glycolytic metabolism, increased glucose uptake and increased sensitivity to oxidative challenge. PET (positron emission tomography) of [18F]fluoro-deoxyglucose uptake confirmed these findings in UCP3-knockout and wild-type mice. Collectively, our findings link the anti-oxidative and metabolic functions of UCP3 through a surprising molecular connection with mitochondrial-bound HKII.

  13. The contribution of aerobic and anaerobic respiration to intestinal colonization and virulence for Salmonella typhimurium in the chicken.

    PubMed

    Barrow, Paul Andrew; Berchieri, Angelo; Freitas Neto, Oliveiro Caetano de; Lovell, Margaret

    2015-10-01

    The basic mechanism whereby Salmonella serovars colonize the chicken intestine remains poorly understood. Previous studies have indicated that proton-translocating proteins utilizing oxygen as terminal electron acceptor do not appear to be of major importance in the gut of the newly hatched chicken and consequently they would be even less significant during intestinal colonization of more mature chickens where the complex gut microflora would trap most of the oxygen in the lumen. Consequently, alternative electron acceptors may be more significant or, in their absence, substrate-level phosphorylation may also be important to Salmonella serovars in this environment. To investigate this we constructed mutants of Salmonella enterica serovar Typhimurium defective in various aspects of oxidative or substrate-level phosphorylation to assess their role in colonization of the chicken intestine, assessed through faecal shedding, and virulence. Mutations affecting use of oxygen or alternative electron acceptors did not eliminate faecal shedding. By contrast mutations in either pta (phosphotransacetylase) or ackA (acetate kinase) abolished shedding. The pta but not the ackA mutation also abolished systemic virulence for chickens. An additional ldhA (lactate dehydrogenase) mutant also showed poor colonizing ability. We hypothesise that substrate-level phosphorylation may be more important than respiration using oxygen or alternative electron acceptors for colonization of the chicken caeca.

  14. The contribution of aerobic and anaerobic respiration to intestinal colonization and virulence for Salmonella typhimurium in the chicken.

    PubMed

    Barrow, Paul Andrew; Berchieri, Angelo; Freitas Neto, Oliveiro Caetano de; Lovell, Margaret

    2015-10-01

    The basic mechanism whereby Salmonella serovars colonize the chicken intestine remains poorly understood. Previous studies have indicated that proton-translocating proteins utilizing oxygen as terminal electron acceptor do not appear to be of major importance in the gut of the newly hatched chicken and consequently they would be even less significant during intestinal colonization of more mature chickens where the complex gut microflora would trap most of the oxygen in the lumen. Consequently, alternative electron acceptors may be more significant or, in their absence, substrate-level phosphorylation may also be important to Salmonella serovars in this environment. To investigate this we constructed mutants of Salmonella enterica serovar Typhimurium defective in various aspects of oxidative or substrate-level phosphorylation to assess their role in colonization of the chicken intestine, assessed through faecal shedding, and virulence. Mutations affecting use of oxygen or alternative electron acceptors did not eliminate faecal shedding. By contrast mutations in either pta (phosphotransacetylase) or ackA (acetate kinase) abolished shedding. The pta but not the ackA mutation also abolished systemic virulence for chickens. An additional ldhA (lactate dehydrogenase) mutant also showed poor colonizing ability. We hypothesise that substrate-level phosphorylation may be more important than respiration using oxygen or alternative electron acceptors for colonization of the chicken caeca. PMID:26443064

  15. Cocurrent biological nitrification and denitrification in wastewater treatment

    SciTech Connect

    Spector, M.

    1998-11-01

    Repetitive conditioning of recycle activated sludge (RAS) under strict anaerobic conditions gradually changes the products of ammonia oxidation from nitrite and nitrate to nitrous oxide (N{sub 2}O) and nitrogen (N{sub 2}). Nitrite inhibits oxygen respiration of anaerobically conditioned sludge; biochemical oxygen demand (BOD) is then oxidized by nitrite, which is reduce to N{sub 2}O and N{sub 2}. When anaerobic RAS conditioning is initially imposed on a nitrifying system, Nitrobacter species continue to oxidize nitrite to nitrate and thus reduce the nitrite available to oxidize BOD. However, Nitrobacter in the mixed liquor gradually tend to wash out because the sole source of Nictrobacter energy, the oxidation of nitrite to nitrate, is diminished to the extent that nitrite is reduced. Incorporation of an RAS conditioning zone to the activate-sludge process results in evolution of a nonfilamentous biomass, which affects both cocurrent biological nitrification and denitrification (CBND) and biological phosphorus removal (BPR). The initial feed zone may be either aerobic or anaerobic. A final anoxic denitrification zone is desirable for removal of residual nitrite plus nitrate (NO{sub x}) from aeration effluent. Nitrous oxide, the main reaction product of CBND, promotes both global warming and destruction of the stratospheric ozone layer.

  16. [Research progress in microbial methane oxidation coupled to denitrification].

    PubMed

    Zhu, Jing; Yuan, Meng-Dong; Liu, Jing-Jing; Huang, Xiao-Xiao; Wu, Wei-Xiang

    2013-12-01

    Methane oxidation coupled to denitrification is an essential bond to connect carbon- and nitrogen cycling. To deeply research this process will improve our understanding on the biochemical cycling of global carbon and nitrogen. As an exogenous gaseous carbon source of denitrification, methane can both regulate the balance of atmospheric methane to effectively mitigate the greenhouse effect caused by methane, and reduce the cost of exogenous carbon source input in traditional wastewater denitrification treatment process. As a result, great attention has being paid to the mechanical study of the process. This paper mainly discussed the two types of methane oxidation coupled to denitrification, i. e., aerobic methane oxidation coupled to denitrification (AME-D) and anaerobic methane oxidation coupled to denitrification (ANME-D), with the focus on the microbiological coupling mechanisms and related affecting factors. The existing problems in the engineering application of methane oxidation coupled to denitrification were pointed out, and the application prospects were approached. PMID:24697087

  17. [Research progress in microbial methane oxidation coupled to denitrification].

    PubMed

    Zhu, Jing; Yuan, Meng-Dong; Liu, Jing-Jing; Huang, Xiao-Xiao; Wu, Wei-Xiang

    2013-12-01

    Methane oxidation coupled to denitrification is an essential bond to connect carbon- and nitrogen cycling. To deeply research this process will improve our understanding on the biochemical cycling of global carbon and nitrogen. As an exogenous gaseous carbon source of denitrification, methane can both regulate the balance of atmospheric methane to effectively mitigate the greenhouse effect caused by methane, and reduce the cost of exogenous carbon source input in traditional wastewater denitrification treatment process. As a result, great attention has being paid to the mechanical study of the process. This paper mainly discussed the two types of methane oxidation coupled to denitrification, i. e., aerobic methane oxidation coupled to denitrification (AME-D) and anaerobic methane oxidation coupled to denitrification (ANME-D), with the focus on the microbiological coupling mechanisms and related affecting factors. The existing problems in the engineering application of methane oxidation coupled to denitrification were pointed out, and the application prospects were approached.

  18. Comprehensive Proteomic and Metabolomic Signatures of Nontypeable Haemophilus influenzae-Induced Acute Otitis Media Reveal Bacterial Aerobic Respiration in an Immunosuppressed Environment.

    PubMed

    Harrison, Alistair; Dubois, Laura G; St John-Williams, Lisa; Moseley, M Arthur; Hardison, Rachael L; Heimlich, Derek R; Stoddard, Alexander; Kerschner, Joseph E; Justice, Sheryl S; Thompson, J Will; Mason, Kevin M

    2016-03-01

    A thorough understanding of the molecular details of the interactions between bacteria and host are critical to ultimately prevent disease. Recent technological advances allow simultaneous analysis of host and bacterial protein and metabolic profiles from a single small tissue sample to provide insight into pathogenesis. We used the chinchilla model of human otitis media to determine, for the first time, the most expansive delineation of global changes in protein and metabolite profiles during an experimentally induced disease. After 48 h of infection with nontypeable Haemophilus influenzae, middle ear tissue lysates were analyzed by high-resolution quantitative two-dimensional liquid chromatography-tandem mass spectrometry. Dynamic changes in 105 chinchilla proteins and 66 metabolites define the early proteomic and metabolomic signature of otitis media. Our studies indicate that establishment of disease coincides with actin morphogenesis, suppression of inflammatory mediators, and bacterial aerobic respiration. We validated the observed increase in the actin-remodeling complex, Arp2/3, and experimentally showed a role for Arp2/3 in nontypeable Haemophilus influenzae invasion. Direct inhibition of actin branch morphology altered bacterial invasion into host epithelial cells, and is supportive of our efforts to use the information gathered to modify outcomes of disease. The twenty-eight nontypeable Haemophilus influenzae proteins identified participate in carbohydrate and amino acid metabolism, redox homeostasis, and include cell wall-associated metabolic proteins. Quantitative characterization of the molecular signatures of infection will redefine our understanding of host response driven developmental changes during pathogenesis. These data represent the first comprehensive study of host protein and metabolite profiles in vivo in response to infection and show the feasibility of extensive characterization of host protein profiles during disease. Identification of

  19. Comprehensive Proteomic and Metabolomic Signatures of Nontypeable Haemophilus influenzae-Induced Acute Otitis Media Reveal Bacterial Aerobic Respiration in an Immunosuppressed Environment.

    PubMed

    Harrison, Alistair; Dubois, Laura G; St John-Williams, Lisa; Moseley, M Arthur; Hardison, Rachael L; Heimlich, Derek R; Stoddard, Alexander; Kerschner, Joseph E; Justice, Sheryl S; Thompson, J Will; Mason, Kevin M

    2016-03-01

    A thorough understanding of the molecular details of the interactions between bacteria and host are critical to ultimately prevent disease. Recent technological advances allow simultaneous analysis of host and bacterial protein and metabolic profiles from a single small tissue sample to provide insight into pathogenesis. We used the chinchilla model of human otitis media to determine, for the first time, the most expansive delineation of global changes in protein and metabolite profiles during an experimentally induced disease. After 48 h of infection with nontypeable Haemophilus influenzae, middle ear tissue lysates were analyzed by high-resolution quantitative two-dimensional liquid chromatography-tandem mass spectrometry. Dynamic changes in 105 chinchilla proteins and 66 metabolites define the early proteomic and metabolomic signature of otitis media. Our studies indicate that establishment of disease coincides with actin morphogenesis, suppression of inflammatory mediators, and bacterial aerobic respiration. We validated the observed increase in the actin-remodeling complex, Arp2/3, and experimentally showed a role for Arp2/3 in nontypeable Haemophilus influenzae invasion. Direct inhibition of actin branch morphology altered bacterial invasion into host epithelial cells, and is supportive of our efforts to use the information gathered to modify outcomes of disease. The twenty-eight nontypeable Haemophilus influenzae proteins identified participate in carbohydrate and amino acid metabolism, redox homeostasis, and include cell wall-associated metabolic proteins. Quantitative characterization of the molecular signatures of infection will redefine our understanding of host response driven developmental changes during pathogenesis. These data represent the first comprehensive study of host protein and metabolite profiles in vivo in response to infection and show the feasibility of extensive characterization of host protein profiles during disease. Identification of

  20. High-Resolution Denitrification Kinetics in Pasture Soils Link N2O Emissions to pH, and Denitrification to C Mineralization.

    PubMed

    Samad, Md Sainur; Bakken, Lars R; Nadeem, Shahid; Clough, Timothy J; de Klein, Cecile A M; Richards, Karl G; Lanigan, Gary J; Morales, Sergio E

    2016-01-01

    Denitrification in pasture soils is mediated by microbial and physicochemical processes leading to nitrogen loss through the emission of N2O and N2. It is known that N2O reduction to N2 is impaired by low soil pH yet controversy remains as inconsistent use of soil pH measurement methods by researchers, and differences in analytical methods between studies, undermine direct comparison of results. In addition, the link between denitrification and N2O emissions in response to carbon (C) mineralization and pH in different pasture soils is still not well described. We hypothesized that potential denitrification rate and aerobic respiration rate would be positively associated with soils. This relationship was predicted to be more robust when a high resolution analysis is performed as opposed to a single time point comparison. We tested this by characterizing 13 different temperate pasture soils from northern and southern hemispheres sites (Ireland and New Zealand) using a fully automated-high-resolution GC detection system that allowed us to detect a wide range of gas emissions simultaneously. We also compared the impact of using different extractants for determining pH on our conclusions. In all pH measurements, soil pH was strongly and negatively associated with both N2O production index (IN2O) and N2O/(N2O+N2) product ratio. Furthermore, emission kinetics across all soils revealed that the denitrification rates under anoxic conditions (NO+N2O+N2 μmol N/h/vial) were significantly associated with C mineralization (CO2 μmol/h/vial) measured both under oxic (r2 = 0.62, p = 0.0015) and anoxic (r2 = 0.89, p<0.0001) conditions.

  1. High-Resolution Denitrification Kinetics in Pasture Soils Link N2O Emissions to pH, and Denitrification to C Mineralization

    PubMed Central

    Samad, Md Sainur; Bakken, Lars R.; Nadeem, Shahid; Clough, Timothy J.; de Klein, Cecile A. M.; Richards, Karl G.; Lanigan, Gary J.; Morales, Sergio E.

    2016-01-01

    Denitrification in pasture soils is mediated by microbial and physicochemical processes leading to nitrogen loss through the emission of N2O and N2. It is known that N2O reduction to N2 is impaired by low soil pH yet controversy remains as inconsistent use of soil pH measurement methods by researchers, and differences in analytical methods between studies, undermine direct comparison of results. In addition, the link between denitrification and N2O emissions in response to carbon (C) mineralization and pH in different pasture soils is still not well described. We hypothesized that potential denitrification rate and aerobic respiration rate would be positively associated with soils. This relationship was predicted to be more robust when a high resolution analysis is performed as opposed to a single time point comparison. We tested this by characterizing 13 different temperate pasture soils from northern and southern hemispheres sites (Ireland and New Zealand) using a fully automated-high-resolution GC detection system that allowed us to detect a wide range of gas emissions simultaneously. We also compared the impact of using different extractants for determining pH on our conclusions. In all pH measurements, soil pH was strongly and negatively associated with both N2O production index (IN2O) and N2O/(N2O+N2) product ratio. Furthermore, emission kinetics across all soils revealed that the denitrification rates under anoxic conditions (NO+N2O+N2 μmol N/h/vial) were significantly associated with C mineralization (CO2 μmol/h/vial) measured both under oxic (r2 = 0.62, p = 0.0015) and anoxic (r2 = 0.89, p<0.0001) conditions. PMID:26990862

  2. Acetate limitation and nitrite accumulation during denitrification

    SciTech Connect

    Oh, J.; Silverstein, J.

    1999-03-01

    Nitrite accumulated in denitrifying activated sludge mixed liquor when the carbon and electron source, acetate, was limited. If acetate was added to obtain a carbon-to-nitrogen (C:N) ratio in the range of 2:1 to 3:1, nitrate was completely consumed at the same rate with no nitrite accumulation, indicating that nitrate concentration controlled the respiration rate as long as sufficient substrate was present. However, when acetate was reduced to a C:N ratio of 1:1, while nitrate continued to be consumed, > 50% of the initial nitrate-nitrogen accumulated as nitrite and 29% persisted as nitrite throughout an endogenous denitrification period of 8--9 h. While nitrite accumulated during acetate-limited denitrification, the specific nitrate reduction rate increased significantly compared with the rate when excess acetate was provided as follows: 0.034 mg-NO{sub 3}-N/mg-mixed liquid volatile suspended solids/h versus 0.023 mg-NO{sub 3}-N/mg-mixed liquid volatile suspended solids/h, respective. This may be explained by nitrate respiration out-competing nitrite respiration for limited acetate electrons. Complete restoration of balanced denitrification and elimination of nitrite accumulation during denitrification required several weeks after the C:N ratio was increased back to 2:1.

  3. Physiological levels of nitrate support anoxic growth by denitrification of Pseudomonas aeruginosa at growth rates reported in cystic fibrosis lungs and sputum.

    PubMed

    Line, Laura; Alhede, Morten; Kolpen, Mette; Kühl, Michael; Ciofu, Oana; Bjarnsholt, Thomas; Moser, Claus; Toyofuku, Masanori; Nomura, Nobuhiko; Høiby, Niels; Jensen, Peter Ø

    2014-01-01

    Chronic Pseudomonas aeruginosa lung infection is the most severe complication in patients with cystic fibrosis (CF). The infection is characterized by the formation of biofilm surrounded by numerous polymorphonuclear leukocytes (PMNs) and strong O2 depletion in the endobronchial mucus. We have reported that O2 is mainly consumed by the activated PMNs, while O2 consumption by aerobic respiration is diminutive and nitrous oxide (N2O) is produced in infected CF sputum. This suggests that the reported growth rates of P. aeruginosa in lungs and sputum may result from anaerobic respiration using denitrification. The growth rate of P. aeruginosa achieved by denitrification at physiological levels (~400 μM) of nitrate (NO(-) 3) is however, not known. Therefore, we have measured growth rates of anoxic cultures of PAO1 and clinical isolates (n = 12) in LB media supplemented with NO(-) 3 and found a significant increase of growth when supplementing PAO1 and clinical isolates with ≥150 μM NO(-) 3 and 100 μM NO(-) 3, respectively. An essential contribution to growth by denitrification was demonstrated by the inability to establish a significantly increased growth rate by a denitrification deficient ΔnirS-N mutant at <1 mM of NO(-) 3. Activation of denitrification could be achieved by supplementation with as little as 62.5 μM of NO(-) 3 according to the significant production of N2O by the nitrous oxide reductase deficient ΔnosZ mutant. Studies of the promoter activity, gene transcripts, and enzyme activity of the four N-oxide reductases in PAO1 (Nar, Nir, Nor, Nos) further verified the engagement of denitrification, showing a transient increase in activation and expression and rapid consumption of NO(-) 3 followed by a transient increase of NO(-) 2. Growth rates obtained by denitrification in this study were comparable to our reported growth rates in the majority of P. aeruginosa cells in CF lungs and sputum. Thus, we have demonstrated that denitrification is required

  4. Involvement in Denitrification is Beneficial to the Biofilm Lifestyle of Comamonas testosteroni: A Mechanistic Study and Its Environmental Implications.

    PubMed

    Wu, Yichao; Shukal, Sudha; Mukherjee, Manisha; Cao, Bin

    2015-10-01

    Comamonas is one of the most abundant microorganisms in biofilm communities driving wastewater treatment. Little has been known about the role of this group of organisms and their biofilm mode of life. In this study, using Comamonas testosteroni as a model organism, we demonstrated the involvement of Comamonas biofilms in denitrification under bulk aerobic conditions and elucidated the influence of nitrate respiration on its biofilm lifestyle. Our results showed that C. testosteroni could use nitrate as the sole electron acceptor for anaerobic growth. Under bulk aerobic condition, biofilms of C. testosteroni were capable of reducing nitrate, and intriguingly, nitrate reduction significantly enhanced viability of the biofilm-cells and reduced cell detachment from the biofilms. Nitrate respiration was further shown to play an essential role in maintaining high cell viability in the biofilms. RNA-seq analysis, quantitative polymerase chain reaction, and liquid chromatography-mass spectrometry revealed a higher level of bis(3'-5')-cyclic dimeric guanosine monophosphate (c-di-GMP) in cells respiring on nitrate than those grown aerobically (1.3 × 10(-4) fmol/cell vs 7.9 × 10(-6) fmol/cell; P < 0.01). C-di-GMP is one universal signaling molecule that regulates the biofilm mode of life, and a higher c-di-GMP concentration reduces cell detachment from biofilms. Taking these factors together, this study reveals that nitrate reduction occurs in mature biofilms of C. testosteroni under bulk aerobic conditions, and the respiratory reduction of nitrate is beneficial to the biofilm lifestyle by providing more metabolic energy to maintain high viability and a higher level of c-di-GMP to reduce cell detachment. PMID:26327221

  5. A PRELIMINARY EXPERIMENT ON DENITRIFICATION OF WASTE LANDFILL LEACHATE

    NASA Astrophysics Data System (ADS)

    Wada, Nariaki; Nakamichi, Tamihiro; Yagi, Masahiro; Matsumoto, Toshihide; Kugimiya, Akikazu; Michioku, Kohji

    A laboratory experiment on denitrification was carried out in order to reduce nitrogen load from municipal landfill leachate. Nitrogen was efficiently removed by feeding sludge of the leachate pond into the tanks, which could activate denitrification bacteria. Although inorganic reducing agent such as iron powder was not able to make the whole water mass anoxic, denitrification took place by supplying organic matters such as methanol, hydrogen feeding agent, etc.. It is considered that small amount of anoxic water film produced on surfaces of container and carriers might contribute to denitrification, although the bulk water is kept aerobic. It is found that organic matters contained in the leachate is so insufficient that nitrification liquid circulation does not work well for denitrification.

  6. Denitrification Potential, Root Biomass and Organic Matter in Degraded and Restored Urban Riparian Zones

    EPA Science Inventory

    Hydrologic changes associated with urbanization often lead to lower water tables and drier, more aerobic soils in riparian zones. These changes reduce the potential for denitrification, an anaerobic microbial process that converts nitrate, a common water pollutant, into nitroge...

  7. Denitrification Potential, Root Biomass, and Organic Matter in Degraded and Restored Urban Riparian Zones

    EPA Science Inventory

    Hydrologic changes associated with urbanization often lead to lower water tables and drier, more aerobic soils in riparian zones. These changes reduce the potential for denitrification, an anaerobic microbial process that converts nitrate, a common water pollutant, into nitrogen...

  8. Soil infiltration bioreactor incorporated with pyrite-based (mixotrophic) denitrification for domestic wastewater treatment.

    PubMed

    Kong, Zhe; Li, Lu; Feng, Chuanping; Chen, Nan; Dong, Shanshan; Hu, Weiwu

    2015-01-01

    In this study, an integrated two-stage soil infiltration bioreactor incorporated with pyrite-based (mixotrophic) denitrification (SIBPD) was designed for domestic wastewater treatment. Benefited from excellent adsorption ability and water-permeability, soil infiltration could avoid clogging, shorten operating time and lower maintenance cost. Respiration and nitrification were mostly engaged in aerobic stage (AES), while nitrate was majorly removed by pyrite-based mixotrophic denitrification mainly occurred in anaerobic stage (ANS). Fed with synthetic and real wastewater for 120days at 1.5h HRT, SIBPD demonstrated good removal performance showing 87.14% for COD, 92.84% for NH4(+)-N and 82.58% for TP along with 80.72% of nitrate removed by ANS. TN removal efficiency was 83.74% when conducting real wastewater. Compared with sulfur-based process, the effluent pH of SIBPD was maintained at 6.99-7.34 and the highest SO4(2-) concentration was only 64.63mgL(-1). This study revealed a promising and feasible application prospect for on-site domestic wastewater treatment. PMID:25827248

  9. Soil infiltration bioreactor incorporated with pyrite-based (mixotrophic) denitrification for domestic wastewater treatment.

    PubMed

    Kong, Zhe; Li, Lu; Feng, Chuanping; Chen, Nan; Dong, Shanshan; Hu, Weiwu

    2015-01-01

    In this study, an integrated two-stage soil infiltration bioreactor incorporated with pyrite-based (mixotrophic) denitrification (SIBPD) was designed for domestic wastewater treatment. Benefited from excellent adsorption ability and water-permeability, soil infiltration could avoid clogging, shorten operating time and lower maintenance cost. Respiration and nitrification were mostly engaged in aerobic stage (AES), while nitrate was majorly removed by pyrite-based mixotrophic denitrification mainly occurred in anaerobic stage (ANS). Fed with synthetic and real wastewater for 120days at 1.5h HRT, SIBPD demonstrated good removal performance showing 87.14% for COD, 92.84% for NH4(+)-N and 82.58% for TP along with 80.72% of nitrate removed by ANS. TN removal efficiency was 83.74% when conducting real wastewater. Compared with sulfur-based process, the effluent pH of SIBPD was maintained at 6.99-7.34 and the highest SO4(2-) concentration was only 64.63mgL(-1). This study revealed a promising and feasible application prospect for on-site domestic wastewater treatment.

  10. Effect of oxic and anoxic conditions on nitrous oxide emissions from nitrification and denitrification processes.

    PubMed

    Rassamee, Varit; Sattayatewa, Chakkrid; Pagilla, Krishna; Chandran, Kartik

    2011-09-01

    A lab-scale sequencing batch reactor fed with real municipal wastewater was used to study nitrous oxide (N(2)O) emissions from simulated wastewater treatment processes. The experiments were performed under four different controlled conditions as follows: (1) fully aerobic, (2) anoxic-aerobic with high dissolved oxygen (DO) concentration, (3) anoxic-aerobic with low DO concentration, and 4) intermittent aeration. The results indicated that N(2)O production can occur from both incomplete nitrification and incomplete denitrification. N(2)O production from denitrification was observed in both aerobic and anoxic phases. However, N(2)O production from aerobic conditions occurred only when both low DO concentrations and high nitrite concentration existed simultaneously. The magnitude of N(2) O produced via anoxic denitrification was lower than via oxic denitrification and required the presence of nitrite. Changes in DO, ammonium, and nitrite concentrations influenced the magnitude of N(2)O production through denitrification. The results also suggested that N(2)O can be produced from incomplete denitrification and then released to the atmosphere during aeration phase due to air stripping. Therefore, biological nitrogen removal systems should be optimized to promote complete nitrification and denitrification to minimize N(2)O emissions.

  11. Cell biology and molecular basis of denitrification.

    PubMed Central

    Zumft, W G

    1997-01-01

    Denitrification is a distinct means of energy conservation, making use of N oxides as terminal electron acceptors for cellular bioenergetics under anaerobic, microaerophilic, and occasionally aerobic conditions. The process is an essential branch of the global N cycle, reversing dinitrogen fixation, and is associated with chemolithotrophic, phototrophic, diazotrophic, or organotrophic metabolism but generally not with obligately anaerobic life. Discovered more than a century ago and believed to be exclusively a bacterial trait, denitrification has now been found in halophilic and hyperthermophilic archaea and in the mitochondria of fungi, raising evolutionarily intriguing vistas. Important advances in the biochemical characterization of denitrification and the underlying genetics have been achieved with Pseudomonas stutzeri, Pseudomonas aeruginosa, Paracoccus denitrificans, Ralstonia eutropha, and Rhodobacter sphaeroides. Pseudomonads represent one of the largest assemblies of the denitrifying bacteria within a single genus, favoring their use as model organisms. Around 50 genes are required within a single bacterium to encode the core structures of the denitrification apparatus. Much of the denitrification process of gram-negative bacteria has been found confined to the periplasm, whereas the topology and enzymology of the gram-positive bacteria are less well established. The activation and enzymatic transformation of N oxides is based on the redox chemistry of Fe, Cu, and Mo. Biochemical breakthroughs have included the X-ray structures of the two types of respiratory nitrite reductases and the isolation of the novel enzymes nitric oxide reductase and nitrous oxide reductase, as well as their structural characterization by indirect spectroscopic means. This revealed unexpected relationships among denitrification enzymes and respiratory oxygen reductases. Denitrification is intimately related to fundamental cellular processes that include primary and secondary

  12. Wetland Characteristics and Denitrification

    EPA Science Inventory

    This presentation serves as an initial summary of our wetland field work's watershed characteristics hydrologic characteristics, water quality measurements, and denitrification assays. We present our measurement results in the context of wetland type (Estuarine, Freshwater Mars...

  13. Expansion of pelagic denitrification during early Pleistocene cooling

    NASA Astrophysics Data System (ADS)

    Robinson, Rebecca S.; Etourneau, Johan; Martinez, Philippe M.; Schneider, Ralph

    2014-03-01

    Bioavailable nitrogen is removed from the oceans in oxygen-deficient benthic and pelagic environments by denitrification. Future warming is predicted to reduce ocean oxygenation and to cause hypoxic regions to expand, potentially accelerating denitrification. A compilation of high-resolution sedimentary nitrogen isotope (δN15) records from the eastern tropical Pacific, North Pacific, and the Arabian Sea, and a global multi-site survey are presented as evidence for weak pelagic denitrification at the end of the Pliocene warm period. Mean δN15 values increased in the major oxygen minimum zones (OMZs) between 2.1 and 1.5 Ma. Pelagic denitrification strengthened during a period of long term global cooling, despite solubility driven increases in initial oxygen contents of Antarctic intermediate and Subantarctic mode waters ventilating the OMZs. This trend is opposite to the predicted mean trend for a cooling ocean as well as to the observed glacial-interglacial variation. Several alternatives to explain the shift are proposed, including a rise in net respiration, a progressive increase in the ventilation age of the deep ocean associated with million year scale, secular cooling, and a shoaling of the remotely ventilated thermocline to shallow depths corresponding to the zone of peak subsurface respiration. Given no evidence for a net increase in production, we assert that large-scale, climate-driven changes in ocean circulation regulate long timescale variations in the extent of pelagic denitrification. Additional data and modeling are required to fully explain the observations.

  14. Whole-Genome Transcriptional Analysis of Chemolithoautotrophic Thiosulfate Oxidation by Thiobacillus denitrificans Under Aerobic vs. Denitrifying Conditions

    SciTech Connect

    Beller, H R; Letain, T E; Chakicherla, A; Kane, S R; Legler, T C; Coleman, M A

    2006-04-22

    Thiobacillus denitrificans is one of the few known obligate chemolithoautotrophic bacteria capable of energetically coupling thiosulfate oxidation to denitrification as well as aerobic respiration. As very little is known about the differential expression of genes associated with ke chemolithoautotrophic functions (such as sulfur-compound oxidation and CO2 fixation) under aerobic versus denitrifying conditions, we conducted whole-genome, cDNA microarray studies to explore this topic systematically. The microarrays identified 277 genes (approximately ten percent of the genome) as differentially expressed using Robust Multi-array Average statistical analysis and a 2-fold cutoff. Genes upregulated (ca. 6- to 150-fold) under aerobic conditions included a cluster of genes associated with iron acquisition (e.g., siderophore-related genes), a cluster of cytochrome cbb3 oxidase genes, cbbL and cbbS (encoding the large and small subunits of form I ribulose 1,5-bisphosphate carboxylase/oxygenase, or RubisCO), and multiple molecular chaperone genes. Genes upregulated (ca. 4- to 95-fold) under denitrifying conditions included nar, nir, and nor genes (associated respectively with nitrate reductase, nitrite reductase, and nitric oxide reductase, which catalyze successive steps of denitrification), cbbM (encoding form II RubisCO), and genes involved with sulfur-compound oxidation (including two physically separated but highly similar copies of sulfide:quinone oxidoreductase and of dsrC, associated with dissimilatory sulfite reductase). Among genes associated with denitrification, relative expression levels (i.e., degree of upregulation with nitrate) tended to decrease in the order nar > nir > nor > nos. Reverse transcription, quantitative PCR analysis was used to validate these trends.

  15. Quantifying factors limiting aerobic degradation during aerobic bioreactor landfilling.

    PubMed

    Yazdani, Ramin; Mostafid, M Erfan; Han, Byunghyun; Imhoff, Paul T; Chiu, Pei; Augenstein, Don; Kayhanian, Masoud; Tchobanoglous, George

    2010-08-15

    A bioreactor landfill cell at Yolo County, California was operated aerobically for six months to quantify the extent of aerobic degradation and mechanisms limiting aerobic activity during air injection and liquid addition. The portion of the solid waste degraded anaerobically was estimated and tracked through time. From an analysis of in situ aerobic respiration and gas tracer data, it was found that a large fraction of the gas-filled pore space was in immobile zones where it was difficult to maintain aerobic conditions, even at relatively moderate landfill cell-average moisture contents of 33-36%. Even with the intentional injection of air, anaerobic activity was never less than 13%, and sometimes exceeded 65%. Analyses of gas tracer and respiration data were used to quantify rates of respiration and rates of mass transfer to immobile gas zones. The similarity of these rates indicated that waste degradation was influenced significantly by rates of oxygen transfer to immobile gas zones, which comprised 32-92% of the gas-filled pore space. Gas tracer tests might be useful for estimating the size of the mobile/immobile gas zones, rates of mass transfer between these regions, and the difficulty of degrading waste aerobically in particular waste bodies. PMID:20704218

  16. Identifying functional zones of denitrification in heterogeneous aquifer systems by numerical simulations - a case study

    NASA Astrophysics Data System (ADS)

    Jang, E.; Kalbacher, T.; He, W.; Shao, H.; Schueth, C.; Kolditz, O.

    2014-12-01

    Nitrate contamination in shallow groundwater is still one of the common problems in many countries. Because of its high solubility and anionic nature, nitrate can easily leach through soil and persist in groundwater for decades. High nitrate concentration has been suggested as a major cause of accelerated eutrophication, methemoglobinemia and gastric cancer. There are several factors influencing the fate of nitrate in groundwater system, which is e.g. distribution of N- sources to soil and groundwater, distribution and amount of reactive substances maintaining denitrification, rate of nitrate degradation and its kinetics, and geological characteristics of the aquifer. Nitrate transport and redox transformation processes are closely linked to complex and spatially distributed physical and chemical interaction, therefore it is difficult to predict and quantify in the field and laboratory experiment. Models can play a key role in elucidation of nitrate reduction pathway in groundwater system and in the design and evaluation of field tests to investigate in situ remediation technologies as well. The goal of the current study is to predict groundwater vulnerability to nitrate, to identify functional zones of denitrification in heterogeneous aquifer systems and to describe the uncertainty of the predictions due to scale effects. For this aim, we developed a kinetic model using multi-component mass transport code OpenGeoSys coupling with IPhreeqc module of the geochemical solver PHREEQC. The developed model included sequential aerobic and nitrate-based respiration, multi-Monod kinetics, multi-species biogeochemical reactions, and geological characteristics of the groundwater aquifer. Moreover water-rock interaction such as secondary mineral precipitation was also included in this model. In this presentation, we focused on the general modelling approach and present the simulation results of nitrate transport simulation in a hypothetical aquifer systems based on data from

  17. Denitrification in anaerobic digesters: A review of recent studies

    SciTech Connect

    Akunna, J.C.

    1996-11-01

    Wastewaters from food processing industries (and domestic activities) are usually treated principally for organic carbon removal. But recent standards have generated interests in nitrogen and phosphorus removal. This has led to the addition of nitrification, denitrification and phosphorus removal units in the existing treatment plants, thus increasing the cost of treatment operations. The need to reduce treatment costs has led to research on ways to carry out many treatment processes in a single system. One of these systems consists of anaerobic and aerobic units in series with effluent recycle. In the anaerobic unit, anaerobic digestion and denitrification take place simultaneously producing methane and nitrogen gas while in the aerobic unit, ammonia oxidation to nitrate (nitrification) takes place. This process configuration appears to give lesser problems associated with operations such as the addition of raw wastewater or external organic carbon to ensure complete denitrification. In this paper a review of the results of recent studies are presented, with special emphasis on the factors affecting treatment efficiencies (i.e., denitrification, ammonia production from nitrate, and methane production efficiencies).

  18. Denitrification and photosynthesis in stream sediment studied with microsensor and whole-core techniques

    SciTech Connect

    Nielsen, L.P.; Christensen, P.B.; Revsbech, N.P.; Soerensen, J. )

    1990-07-01

    The effect of light on benthic photosynthesis, denitrification, and assimilation of NH{sub 4}{sup +} and NO{sub 3}{sup {minus}} in stream sediments was studied with whole-core techniques and with O{sub 2} and N{sub 2}O microsensors. Photosynthetic oxygen production increased the thickness of the aerobic surface layer from 1.5 mm in the dark to {approximately} 3.5 mm at a light intensity saturating photosynthesis. The O{sub 2} flux change concurrently from net uptake to net release and the overall rate of denitrification was reduced by 70%. Denitrification was always restricted to a narrow zone immediately below the aerobic-anaerobic interface. Calculated NO{sub 3}{sup {minus}} microprofiles showed that overall denitrification was primarily dependent on the thickness of the aerobic layer which acted as a barrier for diffusion of NO{sub 3}{sup {minus}} from the overlying water. In the light, algal NO{sub 3}{sup {minus}} assimilation could exceed NO{sub 3}{sup {minus}} consumption by denitrification when availability of NH{sub 4}{sup +} was low. Assimilation of NO{sub 3}{sup {minus}}, however, had no influence on the flux of NO{sub 3}{sup {minus}} to the denitrification zone, since assimilation occurred relatively close to the sediment surface.

  19. Combining simultaneous nitrification-endogenous denitrification and phosphorus removal with post-denitrification for low carbon/nitrogen wastewater treatment.

    PubMed

    Wang, Xiaoxia; Wang, Shuying; Zhao, Ji; Dai, Xian; Peng, Yongzhen

    2016-11-01

    Due to the limited nutrient removal from low carbon/nitrogen (⩽4) wastewater, a process combined simultaneous nitrification-endogenous denitrification and phosphorus removal (SNDPR) with post-denitrification (PD) in a SBR was proposed for deep-level nutrient removal without external carbon addition. SNDPR driven by PAOs and GAOs reduced PO4(3-)-P (98.3%) and partial TN (59.0%) at low DO conditions (0.5±0.1mg/L), and post-dentrification achieved further NOX(-) (produced by SNDPR) removal (24.0%) anoxically by utilizing the residual intracellular polymers in GAOs. Combined control of anaerobic/aerobic/anoxic durations and low DO inhibition to aerobic GAOs and NOB conducted partial nitrification-endogenous denitrification (PNED) (66%), which saved 44.3% intracellular polymers to further reduce 64% TN in effluent. After 115-day operation, the average effluent PO4(3-)-P and TN concentrations were 0.4 and 3.9mg/L, respectively, with 92.1% of TN removal. Highly enriched PAOs (36%±2%), GAOs (22%±2%) and AOB (15%±3%) over NOB (3%±1%) facilitated P uptake, PNED and post-denitrification in the SNDPR-PD system. PMID:27552719

  20. Temperature dependence of denitrification in phototrophic river biofilms.

    PubMed

    Boulêtreau, S; Salvo, E; Lyautey, E; Mastrorillo, S; Garabetian, F

    2012-02-01

    Denitrification is an ecosystem service of nitrogen load regulation along the terrestrial-freshwater-marine continuum. The present study documents the short-term temperature sensitivity of denitrification enzyme activity in phototrophic river biofilms as a typical microbial assemblage of this continuum. Denitrification measurements were performed using the acetylene inhibition method at four incubation temperatures: 1.1, 12.1, 21.2 and 30.9°C. For this range of temperature, N(2)O production could be fitted to an exponential function of incubation temperature, yielding mean (±standard error) activation energy of 1.42 (±0.24) eV and Q(10) of 7.0 (±1.4). This first quantification of denitrification enzyme activity temperature dependence in phototrophic river biofilms compares with previous studies performed in soils and sediments. This demonstrates the high temperature dependence of denitrification as compared to other community-level metabolisms such as respiration or photosynthesis. This result suggests that global warming can unbalance natural community metabolisms in phototrophic river biofilms and affect their biogeochemical budget.

  1. Differential Carbon and Nitrogen Controls of Denitrification in Riparian Zones and Streams along an Urban to Exurban Gradient.

    PubMed

    Waters, Emily R; Morse, Jennifer L; Bettez, Neil D; Groffman, Peter M

    2014-05-01

    Denitrification is an anaerobic microbial process that transforms nitrate (NO) to nitrogen (N) gas, preventing the movement of NO into coastal waters where it can lead to eutrophication. Urbanization can reduce the potential for denitrification in riparian zones and streams by altering the environmental conditions that foster denitrification (i.e., low oxygen and available C). Here we evaluated the factors limiting denitrification potential in forested and herbaceous riparian and stream pool and organic debris dam habitats in urban, suburban, exurban, and forested reference watersheds in the Baltimore, Maryland metropolitan area. Denitrification potential (with and without C and NO additions) and microbial biomass C and N content, potential net N mineralization and nitrification, microbial respiration, and inorganic N pools were measured in summer (June) and fall (November). Denitrification potentials were highest in the herbaceous riparian soils and lowest in pool sediments. Forested riparian soil denitrification potential was highest in the exurban watershed but in other habitats did not vary with watershed type. Nearly all variables were higher in June than in November. Overall, C was a more important driver of denitrification potential than N; potentials in unamended and N-amended treatments were very similar (<200 ng N g h) and were much lower than in the C-amended and C+N-amended treatments (>800 ng N g h). Our results suggest that efforts to enhance denitrification in urban watersheds need to focus on the differential controls of denitrification across habitats, urban land use types, and seasons. PMID:25602824

  2. Denitrification incorporating microporous membranes

    SciTech Connect

    Reising, A.R.; Schroeder, E.D.

    1996-07-01

    A microbial system for removal of nitrate from drinking water in which the denitrification reactions are physically separated from the water being treated by a microporous membrane was studied. The experimental system was composed of two equal-volume cells separated by a 0.02 {mu}m pore size polytetrafluoroethylene membrane. No pressure difference existed across the membrane, and nitrate ions were transported through the membrane by diffusion. Results of experiments with biofilm denitrification and suspended-culture systems are presented. Deoxygenation by N{sub 2} stripping and by SO{sub 3}{sup {minus}2} produced equivalent results. Removal rates with the suspended culture systems were greater than those with biofilms. Effective membrane diffusivities calculated for suspended-culture systems were approximately the same as for sterile systems, indicating that resistance to transport was not changed by the addition of the suspended microbial culture. The methanol requirement observed in the experiments was 1.4 g total organic carbon (TOC) per g NO{sub 3}{sup {minus}}-N removed. Removal rates followed first-order pseudotransport controlled models for both the biofilm and suspended-culture systems. A prototype continuous-flow system is presented.

  3. Searching for hot spots and hot moments of soil denitrification in northern hardwood forests

    NASA Astrophysics Data System (ADS)

    Morse, J. L.; Duran, J.; Morillas, L.; Roales, J.; Bailey, S. W.; McGuire, K. J.; Groffman, P. M.

    2014-12-01

    Denitrification is a key biogeochemical process that affects nitrogen (N) availability, N losses to aquatic systems, and atmospheric chemistry. In upland forests, denitrification has not been thought to be a major N pathway because it is an anaerobic microbial process that requires nitrate, labile carbon (C), and low oxygen (O2) conditions, which do not occur broadly or consistently throughout forest soils. However, there may be enough spatial and temporal heterogeneity at fine scales to support denitrification rates that are relevant at the landscape scale. To quantify the importance of spatial and temporal variability in soil denitrification in northern hardwood forests at the Hubbard Brook Experimental Forest (HBEF; New Hampshire, USA), we developed two related projects: 1) we sought to identify hot spots of biogeochemical activity, including soil denitrification potential, based on hydropedologic settings and flowpaths in a catchment during the growing season; and 2) we investigated the influence of simulated rainfall events on soil O2 and nitrous oxide concentrations, denitrification rates, and soil respiration during different seasons at HBEF. In the first study, we expected to find that sites dominated by soils with thick Bh horizons (zones of C accumulation) would have the highest denitrification rates. However, despite the variation among soil profiles found in different hydropedologic settings, we did not find significant differences in denitrification potential. Rather, when areal coverage and horizon thickness for the contrasting hydropedologic settings were accounted for, catchment-scale estimates of denitrification potential were about 1/3 higher than conventionally calculated estimates. In the second study, soil O2 in surface horizons only decreased following additions of labile C. Responses of soil respiration and denitrification to simulated rainfall were also influenced by season. While these studies highlight the complex heterogeneity in forest

  4. Impacts of carbon source addition on denitrification and phosphorus uptake in enhanced biological phosphorus removal systems.

    PubMed

    Begum, Shamim A; Batista, Jacimaria R

    2013-01-01

    In this study, simultaneous denitrification and phosphorus (P) removal were investigated in batch tests using nitrified mixed liquor and secondary wastewater influent from a full-scale treatment plant and different levels of acetate and propionate as supplemental carbon sources. Without supplemental carbon source, denitrification occurred at low rate and P release and P uptake was negatively affected (i.e., P removal of only 59.7%). When acetate and propionate were supplied, denitrification and P release occurred simultaneously under anoxic conditions. For acetate and propionate at a C/N stoichiometric ratio of 7.6, P release was negatively affected by denitrification. For acetate, the percent P removal and denitrification were very similar for C/N ratios of 22 (5X stoichiometric) and 59 (10X stoichiometric). For propionate, both percent P removal and denitrification deteriorated for C/N ratios of 22 (5X stoichiometric) and 45 (10X stoichiometric). It was observed that carbon source added in excess to stoichiometric ratio was consumed in the aerobic zone, but P was not taken up. This implies that PAO bacteria may utilize the excess carbon source in the aerobic zone rather than their polyhydroxyalkanoate (PHA) reserves, thereby promoting deterioration of the system.

  5. Nitrogen isotope fractionation as a tool for determining denitrification in constructed wetlands.

    PubMed

    Søvik, A K; Mørkved, P T

    2007-01-01

    Constructed wetlands (CWs) treat municipal wastewater through the retention of nutrients and particles. The retention of nitrogen (N) was studied in the laboratory using columns and meso-scale trenches filled with shellsand and light-weight aggregates (LWA). The objective was to examine whether measuring the natural abundance of delta15N in NO3(-) could be used to estimate the relative contribution of denitrification to the total NO3(-) removal in these treatment systems. In both the columns and the trenches it was seen that denitrification was more efficient in shellsand and LWA collected from on-site treatment systems compared to new LWA. This was due to the high pH value (about 10) of new LWA. The enrichment factors (epsilon) from the column study were in general lower than values found in laboratory tests of isotope discrimination in denitrification, but similar to epsilon values found for denitrification in groundwater systems. No enrichment factors could be found for the trench study due to simultaneous denitrification and nitrification and inhomogeneous N transformation patterns. When NH4+ was partially nitrified in the upper parts of the trench, this diluted the 15N enrichment of NO3(-) due to denitrification. Thus, in systems with high NH4+ concentrations and partial aerobic conditions, the method of natural abundance is not suitable for estimating the relative contribution of denitrification to the total NO3(-) removal. PMID:17802852

  6. Nitrate removal in stream ecosystems measured by 15N addition experiments: 2. Denitrification

    SciTech Connect

    Mulholland, Patrick J; Hall, Robert; Sobota, Daniel; Dodds, Walter; Findlay, Stuart; Grimm, Nancy; Hamilton, Stephen; McDowell, William; O'Brien, Jon; Tank, Jennifer; Ashkenas, Linda; Cooper, Lee W; Dahm, Cliff; Gregory, Stanley; Johnson, Sherri; Meyer, Judy; Peterson, Bruce; Poole, Geoff; Valett, H. Maurice; Webster, Jackson; Arango, Clay; Beaulieu, Jake; Bernot, Melody; Burgin, Amy; Crenshaw, Chelsea; Helton, Ashley; Johnson, Laura; Niederlehner, Bobbie; Potter, Jody; Sheibley, Rich; Thomas, Suzanne

    2009-01-01

    We measured denitrification rates using a field {sup 15}N-NO{sub 3}{sup -} tracer-addition approach in a large, cross-site study of nitrate uptake in reference, agricultural, and suburban-urban streams. We measured denitrification rates in 49 of 72 streams studied. Uptake length due to denitrification (S{sub Wden}) ranged from 89 m to 184 km (median of 9050 m) and there were no significant differences among regions or land-use categories, likely because of the wide range of conditions within each region and land use. N{sub 2} production rates far exceeded N{sub 2}O production rates in all streams. The fraction of total NO{sub 3}{sup -} removal from water due to denitrification ranged from 0.5% to 100% among streams (median of 16%), and was related to NH{sub 4}{sup +} concentration and ecosystem respiration rate (ER). Multivariate approaches showed that the most important factors controlling S{sub Wden} were specific discharge (discharge/width) and NO{sub 3}{sup -} concentration (positive effects), and ER and transient storage zones (negative effects). The relationship between areal denitrification rate (U{sub den}) and NO{sub 3}{sup -} concentration indicated a partial saturation effect. A power function with an exponent of 0.5 described this relationship better than a Michaelis-Menten equation. Although U{sub den} increased with increasing NO{sub 3}{sup -} concentration, the efficiency of NO{sub 3}{sup -} removal from water via denitrification declined, resulting in a smaller proportion of streamwater NO{sub 3}{sup -} load removed over a given length of stream. Regional differences in stream denitrification rates were small relative to the proximate factors of NO{sub 3}{sup -} concentration and ecosystem respiration rate, and land use was an important but indirect control on denitrification in streams, primarily via its effect on NO{sub 3}{sup -} concentration.

  7. Nitrate removal in stream ecosystems measured by 15N addition experiments: Denitrification

    USGS Publications Warehouse

    Mulholland, P.J.; Hall, R.O.; Sobota, D.J.; Dodds, W.K.; Findlay, S.E.G.; Grimm, N. B.; Hamilton, S.K.; McDowell, W.H.; O'Brien, J. M.; Tank, J.L.; Ashkenas, L.R.; Cooper, L.W.; Dahm, Clifford N.; Gregory, S.V.; Johnson, S.L.; Meyer, J.L.; Peterson, B.J.; Poole, G.C.; Valett, H.M.; Webster, J.R.; Arango, C.P.; Beaulieu, J.J.; Bernot, M.J.; Burgin, A.J.; Crenshaw, C.L.; Helton, A.M.; Johnson, L.T.; Niederlehner, B.R.; Potter, J.D.; Sheibley, R.W.; Thomasn, S.M.

    2009-01-01

    We measured denitrification rates using a field 15N-NO- 3 tracer-addition approach in a large, cross-site study of nitrate uptake in reference, agricultural, and suburban-urban streams. We measured denitrification rates in 49 of 72 streams studied. Uptake length due to denitrification (SWden) ranged from 89 m to 184 km (median of 9050 m) and there were no significant differences among regions or land-use categories, likely because of the wide range of conditions within each region and land use. N2 production rates far exceeded N2O production rates in all streams. The fraction of total NO-3 removal from water due to denitrification ranged from 0.5% to 100% among streams (median of 16%), and was related to NHz 4 concentration and ecosystem respiration rate (ER). Multivariate approaches showed that the most important factors controlling SWden were specific discharge (discharge / width) and NO-3 concentration (positive effects), and ER and transient storage zones (negative effects). The relationship between areal denitrification rate (Uden) and NO- 3 concentration indicated a partial saturation effect. A power function with an exponent of 0.5 described this relationship better than a Michaelis-Menten equation. Although Uden increased with increasing NO- 3 concentration, the efficiency of NO-3 removal from water via denitrification declined, resulting in a smaller proportion of streamwater NO-3 load removed over a given length of stream. Regional differences in stream denitrification rates were small relative to the proximate factors of NO-3 concentration and ecosystem respiration rate, and land use was an important but indirect control on denitrification in streams, primarily via its effect on NO-3 concentration. ?? 2009.

  8. Simultaneous phenol removal, nitrification and denitrification using microbial fuel cell technology.

    PubMed

    Feng, Chunhua; Huang, Liqiao; Yu, Hui; Yi, Xiaoyun; Wei, Chaohai

    2015-06-01

    Here we show that concomitant removal of phenol and nitrogen can be accomplished in a single dual-chamber microbial fuel cell (MFC) reactor, in which the two chambers are separated with an anion-exchange membrane. A series of experiments were performed with ammonium (230 NH4(+)-N mg L(-1)) and phenol (with concentrations varying from 0 to 1400 mg L(-1)) fed to the aerobic cathode chamber of the MFC. Experimental results demonstrated that no apparent inhibitory effect of phenol on the nitrifying reaction was noted even at the phenol concentration up to 600 mg L(-1). For all the experiments, simultaneous nitrification and denitrification was achieved in the MFC. In comparison to the traditional aerobic bioreactor (ABR) and the same MFC run under the open-circuit condition, the MFC reactor allowed less inhibition of nitrification to phenol exposure and higher rate of nitrogen removal. The data of bacterial analysis revealed that electrochemically active bacteria and denitrifiers in the anaerobic chamber play a significant role in electricity generation and anaerobic denitrification, respectively, while phenol-degrading bacteria, nitrifiers, and denitrifiers in the aerobic cathode chamber are responsible for phenol oxidation, aerobic nitrification and aerobic denitrification, respectively. These results imply that the MFC holds potential for simultaneous removal of phenolic compounds and nitrogen contained in some particular industrial wastewaters.

  9. Widespread occurrence of nitrate storage and denitrification among Foraminifera and Gromiida

    PubMed Central

    Piña-Ochoa, Elisa; Høgslund, Signe; Geslin, Emmanuelle; Cedhagen, Tomas; Revsbech, Niels Peter; Nielsen, Lars Peter; Schweizer, Magali; Jorissen, Frans; Rysgaard, Søren; Risgaard-Petersen, Nils

    2009-01-01

    Benthic foraminifers inhabit a wide range of aquatic environments including open marine, brackish, and freshwater environments. Here we show that several different and diverse foraminiferal groups (miliolids, rotaliids, textulariids) and Gromia, another taxon also belonging to Rhizaria, accumulate and respire nitrates through denitrification. The widespread occurrence among distantly related organisms suggests an ancient origin of the trait. The diverse metabolic capacity of these organisms, which enables them to respire with oxygen and nitrate and to sustain respiratory activity even when electron acceptors are absent from the environment, may be one of the reasons for their successful colonization of diverse marine sediment environments. The contribution of eukaryotes to the removal of fixed nitrogen by respiration may equal the importance of bacterial denitrification in ocean sediments. PMID:20080540

  10. Protein Network of the Pseudomonas aeruginosa Denitrification Apparatus

    PubMed Central

    Borrero-de Acuña, José Manuel; Rohde, Manfred; Wissing, Josef; Jänsch, Lothar; Schobert, Max; Molinari, Gabriella; Timmis, Kenneth N.

    2016-01-01

    . The molecular basis for the interaction of these complexes is poorly understood. We employed membrane interactomics and electron microscopy to determine the protein-protein interactions involved. The well-investigated enzyme complexes of denitrification of the pathogenic bacterium Pseudomonas aeruginosa served as a model. Denitrification is one essential step of the universal N cycle and provides the bacterium with an effective alternative to oxygen respiration. This process allows the bacterium to form biofilms, which create low-oxygen habitats and which are a key in the infection mechanism. Our results provide new insights into the molecular basis of respiration, as well as opening a new window into the infection strategies of this pathogen. PMID:26903416

  11. AEROBIC DENITRIFICATION: IMPLICATIONS FOR THE MOM RIVER BASIN

    EPA Science Inventory

    Each year about 1.6 million metric tons of nitrogen, mostly from agriculture, is discharged from the lower Mississippi/Atchafalaya River Basin into the Gulf of Mexico, and each spring this excess nitrogen fuels the formation of a huge hypoxic zone in the Gulf. In the Mississippi...

  12. Mechanism and rate of denitrification in an agricultural watershed: Electron and mass balance along groundwater flow paths

    USGS Publications Warehouse

    Tesoriero, A.J.; Liebscher, H.; Cox, S.E.

    2000-01-01

    The rate and mechanism of nitrate removal along and between groundwater flow paths were investigated using a series of well nests screened in an unconfined sand and gravel aquifer. Intensive agricultural activity in this area has resulted in nitrate concentrations in groundwater often exceeding drinking water standards. Both the extent and rate of denitrification varied depending on the groundwater flow path. While little or no denitrification occurred in much of the upland portions of the aquifer, a gradual redox gradient is observed as aerobic upland groundwater moves deeper in the aquifer. In contrast, a sharp shallow redox gradient is observed adjacent to a third-order stream as aerobic groundwater enters reduced sediments. An essentially complete loss of nitrate concurrent with increases in excess N2 provide evidence that denitrification occurs as groundwater enters this zone. Electron and mass balance calculations suggest that iron sulfide (e.g., pyrite) oxidation is the primary source of electrons for denitrification. Denitrification rate estimates were based on mass balance calculations using nitrate and excess N2 coupled with groundwater travel times. Travel times were determined using a groundwater flow model and were constrained by chlorofluorocarbon-based age dates. Denitrification rates were found to vary considerably between the two areas where denitrification occurs. Denitrification rates in the deep, upland portions of the aquifer were found to range from < 0.01 to 0.14 mM of N per year; rates at the redoxcline along the shallow flow path range from 1.0 to 2.7 mM of N per year. Potential denitrification rates in groundwater adjacent to the stream may be much faster, with rates up to 140 mM per year based on an in situ experiment conducted in this zone.The rate and mechanism of nitrate removal along and between groundwater flow paths were investigated using a series of well nests screened in an unconfined sand and gravel aquifer. Intensive

  13. Using nirS gene expression as a proxy for denitrification rate

    NASA Astrophysics Data System (ADS)

    Bachmann, M.; Kump, L.; Regan, J.

    2004-12-01

    Quantification of microbial respiration rates in subsurface environments is complicated by difficult access to samples, impervious aquifer materials, and a lack of information about groundwater transport processes. Here, Quantitative Reverse Transcriptase Polymerase Chain Reaction (Q-RT-PCR) is investigated as a novel method of directly quantifying biological denitrification rates on a single sample using a single measurement. Benchtop batch reactors innoculated with the model organism Paracoccus denitrificans are sampled for denitrification rate as measured by mass balance, and these rates are then correlated with the abundance of expressed copies of the nitrite reductase gene nirS. Future work will examine the applicability of this technique to mixed cultures and environmental samples.

  14. [Biocatalyst of redox mediators on the denitrification by Paracoccus versutus strain GW1].

    PubMed

    Li, Hai-Bo; Lian, Jing; Guo, Yan-Kai; Zhao, Li-Jun; Du, Hai-Feng; Yang, Jing-Liang; Guo, Jian-Bo

    2012-07-01

    The quinone respiration process of Paracoccus versutus strain GW1 was characterized and the effects of the four redox mediators on the denitrification process were studied. The experiment results suggested that quinones were utilized by Paracoccus versutus strain GW1 as electron acceptors in the respiratory chain and reduced to hydroquinone. Batch experiments were carried out to investigate the biocatalyst effect of redox mediators as catalyst on the denitrification process at 35 degrees C. All four redox mediators tested were able to enhance the nitrate removal efficiency and the denitrification efficiency by 1.14-1.63 fold and 1.12-2.02 fold, respectively. The accelerating effect from high to low was AQDS > 1,5-AQDS > AQS > alpha-AQS. In the presence of redox mediators, the stabilized ORP values in the nitrate decomposition process were reduced by 33-75 mV. The pH variations in denitrification with redox mediators showed similar tendency to that of the conventional nitrate removal process. In the concentration range of 0-0.32 mmol x L(-1), AQDS had the best accelerating effect and a linear correlation was found for the denitrification rate K and the AQDS concentration cAQDS. This study indicated that the application of redox mediators significantly improved the denitrification process by enhancing the decomposition rate. PMID:23002627

  15. Denitrification by Chromobacterium violaceum.

    PubMed

    Bazylinski, D A; Palome, E; Blakemore, N A; Blakemore, R P

    1986-10-01

    One host (Rana catesbiana)-associated and two free-living mesophilic strains of bacteria with violet pigmentation and biochemical characteristics of Chromobacterium violaceum were isolated from freshwater habitats. Cells of each freshly isolated strain and of strain ATCC 12472 (the neotype strain) grew anaerobically with glucose as the sole carbon and energy source. The major fermentation products of cells grown in Trypticase soy broth (BBL Microbiology Systems, Cockeysville, Md.) supplemented with glucose included acetate, small amounts of propionate, lactate, and pyruvate. The final cell yield and culture growth rate of each strain cultured anaerobically in this medium increased approximately twofold with the addition of 2 mM NaNO(3). Final growth yields increased in direct proportion to the quantity of added NaNO(3) over the range of 0.5 to 5 mM. Each strain reduced NO(3), producing NO(2), NO, and N(2)O. NO(2) accumulated transiently. With 2 mM NaNO(3) in the medium, N(2)O made up 85 to 98% of the N product recovered with each strain. N-oxides were recovered in the same quantity and distribution whether 0.01 atm (ca. 1 kPa) of C(2)H(2) (added to block N(2)O reduction) was present or not. Neither N(2) production nor gas accumulation was detected during NO(3) reduction by growing cells. Cell growth in media containing 0.5 to 5 mM NaNO(2) in lieu of NaNO(3) was delayed, and although N(2)O was produced by the end of growth, NO(2) -containing media did not support growth to an extent greater than did medium lacking NO(3) or NO(2). The data indicate that C. violaceum cells ferment glucose or denitrify, terminating denitrification with the production of N(2)O, and that NO(2) reduction to N(2)O is not coupled to growth but may serve as a detoxification mechanism. No strain detectably fixed N(2) (reduced C(2)H(2)). PMID:16347164

  16. Denitrification associated with stream periphyton: Chamber estimates from undisrupted communities

    USGS Publications Warehouse

    Duff, J.H.; Triska, F.J.; Oremland, R.S.

    1984-01-01

    Undisrupted periphyton communities from a N-rich (NO3- = 63 ??mol L-1) and pristine (NO3- = 2.9 ??mol L-1) stream were assayed for denitrifying activity (acetylene-blockage technique) in 40-L chambers incubated at in situ temperature and nutrient concentrations. Nitrous oxide formation associated with periphyton from the N-rich stream was immediate and linear (52.1 ??mol N2O m-2 h-1) in the dark, anaerobic chamber (50 kPa C2H2). In the corresponding light, aerobic chamber (50 kPa C2H2), N2O production was inhibited by 82% (9.3 ??mol N2O m-2 h-1). Nitrous oxide formation was not associated with periphyton from the pristine stream incubated in situ, either with or without NO3- amendment. Denitrification estimates made with undisrupted periphyton communities at in situ temperature and nutrient concentrations (40-L chambers) were less variable than estimates made with periphyton 'scrapings' in small flasks (room temperature). The calculated diel periphyton-associated denitrification rate based on a 14-h light-10-h dark day was 651 ??mol N2O m-2 d-1. The data suggest denitrification within periphyton mats may contribute toward removal of NO3- from N-rich fluvial environments.

  17. The enzymes associated with denitrification

    NASA Technical Reports Server (NTRS)

    Hochstein, L. I.; Tomlinson, G. A.

    1988-01-01

    The enzymes involved in the reduction of nitrogenous oxides are thought to be intermediates in denitrification processes. This review examines the roles of nitrate reductase, nitrite reductases, nitric oxide reductase, mechanisms of N-N bond formation, and nitrous oxide reductases.

  18. Sediment, water column, and open-channel denitrification in rivers measured using membrane-inlet mass spectrometry

    NASA Astrophysics Data System (ADS)

    Reisinger, Alexander J.; Tank, Jennifer L.; Hoellein, Timothy J.; Hall, Robert O.

    2016-05-01

    Riverine biogeochemical processes are understudied relative to headwaters, and reach-scale processes in rivers reflect both the water column and sediment. Denitrification in streams is difficult to measure, and is often assumed to occur only in sediment, but the water column is potentially important in rivers. Dissolved nitrogen (N) gas flux (as dinitrogen (N2)) and open-channel N2 exchange methods avoid many of the artificial conditions and expenses of common denitrification methods like acetylene block and 15N-tracer techniques. We used membrane-inlet mass spectrometry and microcosm incubations to quantify net N2 and oxygen flux from the sediment and water column of five Midwestern rivers spanning a land use gradient. Sediment and water column denitrification ranged from below detection to 1.8 mg N m-2 h-1 and from below detection to 4.9 mg N m-2 h-1, respectively. Water column activity was variable across rivers, accounting for 0-85% of combined microcosm denitrification and 39-85% of combined microcosm respiration. Finally, we estimated reach-scale denitrification at one Midwestern river using a diel, open-channel N2 exchange approach based on reach-scale metabolism methods, providing an integrative estimate of riverine denitrification. Reach-scale denitrification was 8.8 mg N m-2 h-1 (95% credible interval: 7.8-9.7 mg N m-2 h-1), higher than combined sediment and water column microcosm estimates from the same river (4.3 mg N m-2 h-1) and other estimates of reach-scale denitrification from streams. Our denitrification estimates, which span habitats and spatial scales, suggest that rivers can remove N via denitrification at equivalent or higher rates than headwater streams.

  19. Inhibition of denitrification activity but not of mRNA induction in Paracoccus denitrificans by nitrite at a suboptimal pH.

    PubMed

    Baumann, B; van der Meer, J R; Snozzi, M; Zehnder, A J

    1997-10-01

    The influence of pH on the denitrification activity of a continuous culture of Paracoccus denitrificans was studied in relation to the presence of nitrite. After a transition from aerobic to anaerobic conditions at the suboptimal pH of 6.8, P. denitrificans was not able to build up a functional denitrification pathway. Nitrite accumulated in the medium as the predominant denitrification product. Although the nitrite reductase gene was induced properly, the enzyme could not be detected at sufficient amounts in the culture. These observations was somehow inhibited, or once synthesized nitrite reductase was inactivated, possibly by the high concentrations of nitrous acid (HNO2). Interestingly, when a P. denitrificans culture which was grown to steady-state under anaerobic conditions was then exposed to suboptimal pHs, cells exhibited a reduced overall denitrification activity, but neither nitrite nor any other denitrification intermediate accumulated. PMID:9403103

  20. Denitrification in the Antarctic stratosphere

    NASA Technical Reports Server (NTRS)

    Salawitch, R. J.; Gobbi, G. P.; Wofsy, S. C.; Mcelroy, M. B.

    1989-01-01

    Rapid loss of ozone over Antarctica in spring requires that the abundance of gaseous nitric acid be very low. Precipitation of particulate nitric acid has been assumed to occur in association with large ice crystals, requiring significant removal of H2O and temperatures well below the frost point. However, stratospheric clouds exhibit a bimodal size distribution in the Antarctic atmosphere, with most of the nitrate concentrated in particles with radii of 1 micron or greater. It is argued here that the bimodal size distribution sets the stage for efficient denitrification, with nitrate particles either falling on their own or serving as nuclei for the condensation of ice. Denitrification can therefore occur without significant dehydration, and it is unnecessary for temperatures to drop significantly below the frost point.

  1. Diverse electron sources support denitrification under hypoxia in the obligate methanotroph Methylomicrobium album strain BG8

    PubMed Central

    Kits, K. Dimitri; Campbell, Dustin J.; Rosana, Albert R.; Stein, Lisa Y.

    2015-01-01

    Aerobic methane-oxidizing bacteria (MOB) are a diverse group of microorganisms that are ubiquitous in natural environments. Along with anaerobic MOB and archaea, aerobic methanotrophs are critical for attenuating emission of methane to the atmosphere. Clearly, nitrogen availability in the form of ammonium and nitrite have strong effects on methanotrophic activity and their natural community structures. Previous findings show that nitrite amendment inhibits the activity of some cultivated methanotrophs; however, the physiological pathways that allow some strains to transform nitrite, expression of gene inventories, as well as the electron sources that support this activity remain largely uncharacterized. Here we show that Methylomicrobium album strain BG8 utilizes methane, methanol, formaldehyde, formate, ethane, ethanol, and ammonia to support denitrification activity under hypoxia only in the presence of nitrite. We also demonstrate that transcript abundance of putative denitrification genes, nirS and one of two norB genes, increased in response to nitrite. Furthermore, we found that transcript abundance of pxmA, encoding the alpha subunit of a putative copper-containing monooxygenase, increased in response to both nitrite and hypoxia. Our results suggest that expression of denitrification genes, found widely within genomes of aerobic methanotrophs, allow the coupling of substrate oxidation to the reduction of nitrogen oxide terminal electron acceptors under oxygen limitation. The present study expands current knowledge of the metabolic flexibility of methanotrophs by revealing that a diverse array of electron donors support nitrite reduction to nitrous oxide under hypoxia. PMID:26500622

  2. Denitrification potential in stormwater control structures and natural riparian zones in an urban landscape.

    PubMed

    Bettez, Neil D; Groffman, Peter M

    2012-10-16

    Humans have significantly altered urban landscapes, creating impervious surfaces, and changing drainage patterns that increase volume and velocity as well as frequency and timing of runoff following precipitation events. These changes in runoff have impaired streams and riparian areas that previously reduced watershed nitrogen (N) flux through uptake and denitrification. Stormwater control measures (SCM) are used most frequently to mitigate these hydrologic impacts. While SCM control runoff, their ability to remove N compared to natural riparian areas is not well-known. In this study we compared potential denitrification [as denitrification enzyme activity (DEA)] in five types of SCM (wet ponds, dry detention ponds, dry extended detention, infiltration basin, and filtering practices) and forested and herbaceous riparian areas in Baltimore, MD. DEA was higher in SCM (1.2 mg N kg(-1) hr(-1)) than in riparian areas (0.4 mg N kg(-1) hr(-1)). While DEA was highly correlated with soil moisture, organic matter, microbial biomass, and soil respiration areas across sites, it was always higher in SCM at equivalent levels of these variables. SCM appear to function as denitrification hotspots and, despite having similar microbial biomass, have higher potential denitrification than natural riparian areas.

  3. Flow microcalorimetry of a respiration-deficient mutant of Saccharomyces cerevisiae.

    PubMed

    Loureiro-Dias, M C; Arrabaça, J D

    1982-01-01

    In aerobic batch cultures in mineral medium with glucose of a respiration-deficient mutant of Saccharomyces cerevisiae, growth parameters were estimated and the heat evolved was measured by a flow microcalorimeter. A growth enthalpy of -163.6 joule per mole of glucose consumed was measured. Under anaerobic conditions, the value was -134.6 joule, closer to the expected for alcoholic fermentation alone. The difference was found to be due to cyanide-resistant respiration under aerobic conditions.

  4. Topographic effects on denitrification in drained agricultural fields

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Denitrification is affected by soil moisture, while soil moisture can be affected by topography. Therefore, denitrification can be spatially correlated to topographic gradients. Three prior converted fields on the Delmarva Peninsula were sampled spatially for denitrification enzyme activity. The up...

  5. Genome sequences for six Rhodanobacter strains isolated from soils and the terrestrial subsurface with variable denitrification capabilities

    SciTech Connect

    Kostka, Joel; Green, Stefan; Rishishwar, Lavanya; Prakash, Om; Katz, Lee; Marino-Ramirez, Leonardo; Jordan, King; Munk, Christine; Ivanova, Natalia; Mikhailova, Natalia; Watson, David B; Brown, Steven D; Palumbo, Anthony Vito; Brooks, Scott C

    2012-01-01

    We report the first genome sequences for six strains of Rhodanobacter species isolated from a variety of soil and subsurface environments. Three of these strains are capable of complete denitrification and three others are not. However, all six strains contain most of the genes required for the respiration of nitrate to gaseous nitrogen. The nondenitrifying members of the genus lack only the gene for nitrate reduction, the first step in the full denitrification pathway. The data suggest that the environmental role of bacteria from the genus Rhodanobacter should be reevaluated.

  6. Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities

    PubMed Central

    Green, Stefan J.; Rishishwar, Lavanya; Prakash, Om; Katz, Lee S.; Mariño-Ramírez, Leonardo; Jordan, I. King; Munk, Christine; Ivanova, Natalia; Mikhailova, Natalia; Watson, David B.; Brown, Steven D.; Palumbo, Anthony V.; Brooks, Scott C.

    2012-01-01

    We report the first genome sequences for six strains of Rhodanobacter species isolated from a variety of soil and subsurface environments. Three of these strains are capable of complete denitrification and three others are not. However, all six strains contain most of the genes required for the respiration of nitrate to gaseous nitrogen. The nondenitrifying members of the genus lack only the gene for nitrate reduction, the first step in the full denitrification pathway. The data suggest that the environmental role of bacteria from the genus Rhodanobacter should be reevaluated. PMID:22843592

  7. Nosepiece respiration monitor

    NASA Technical Reports Server (NTRS)

    Lavery, A. L.; Long, L. E.; Rice, N. E.

    1968-01-01

    Comfortable, inexpensive nosepiece respiration monitor produces rapid response signals to most conventional high impedance medical signal conditioners. The monitor measures respiration in a manner that produces a large signal with minimum delay.

  8. Anaerobic Metabolism in Haloferax Genus: Denitrification as Case of Study.

    PubMed

    Torregrosa-Crespo, J; Martínez-Espinosa, R M; Esclapez, J; Bautista, V; Pire, C; Camacho, M; Richardson, D J; Bonete, M J

    2016-01-01

    A number of species of Haloferax genus (halophilic archaea) are able to grow microaerobically or even anaerobically using different alternative electron acceptors such as fumarate, nitrate, chlorate, dimethyl sulphoxide, sulphide and/or trimethylamine. This metabolic capability is also shown by other species of the Halobacteriaceae and Haloferacaceae families (Archaea domain) and it has been mainly tested by physiological studies where cell growth is observed under anaerobic conditions in the presence of the mentioned compounds. This work summarises the main reported features on anaerobic metabolism in the Haloferax, one of the better described haloarchaeal genus with significant potential uses in biotechnology and bioremediation. Special attention has been paid to denitrification, also called nitrate respiration. This pathway has been studied so far from Haloferax mediterranei and Haloferax denitrificans mainly from biochemical point of view (purification and characterisation of the enzymes catalysing the two first reactions). However, gene expression and gene regulation is far from known at the time of writing this chapter.

  9. Anaerobic Metabolism in Haloferax Genus: Denitrification as Case of Study.

    PubMed

    Torregrosa-Crespo, J; Martínez-Espinosa, R M; Esclapez, J; Bautista, V; Pire, C; Camacho, M; Richardson, D J; Bonete, M J

    2016-01-01

    A number of species of Haloferax genus (halophilic archaea) are able to grow microaerobically or even anaerobically using different alternative electron acceptors such as fumarate, nitrate, chlorate, dimethyl sulphoxide, sulphide and/or trimethylamine. This metabolic capability is also shown by other species of the Halobacteriaceae and Haloferacaceae families (Archaea domain) and it has been mainly tested by physiological studies where cell growth is observed under anaerobic conditions in the presence of the mentioned compounds. This work summarises the main reported features on anaerobic metabolism in the Haloferax, one of the better described haloarchaeal genus with significant potential uses in biotechnology and bioremediation. Special attention has been paid to denitrification, also called nitrate respiration. This pathway has been studied so far from Haloferax mediterranei and Haloferax denitrificans mainly from biochemical point of view (purification and characterisation of the enzymes catalysing the two first reactions). However, gene expression and gene regulation is far from known at the time of writing this chapter. PMID:27134021

  10. Denitrification in Agricultural Soils: Integrated control and Modelling at various scales (DASIM)

    NASA Astrophysics Data System (ADS)

    Müller, Christoph; Well, Reinhard; Böttcher, Jürgen; Butterbach-Bahl, Klaus; Dannenmann, Michael; Deppe, Marianna; Dittert, Klaus; Dörsch, Peter; Horn, Marcus; Ippisch, Olaf; Mikutta, Robert; Senbayram, Mehmet; Vogel, Hans-Jörg; Wrage-Mönnig, Nicole; Müller, Carsten

    2016-04-01

    The new research unit DASIM brings together the expertise of 11 working groups to study the process of denitrification at unprecedented spatial and temporal resolution. Based on state-of-the art analytical techniques our aim is to develop improved denitrification models ranging from the microscale to the field/plot scale. Denitrification, the process of nitrate reduction allowing microbes to sustain respiration under anaerobic conditions, is the key process returning reactive nitrogen as N2to the atmosphere. Actively denitrifying communities in soil show distinct regulatory phenotypes (DRP) with characteristic controls on the single reaction steps and end-products. It is unresolved whether DRPs are anchored in the taxonomic composition of denitrifier communities and how environmental conditions shape them. Despite being intensively studied for more than 100 years, denitrification rates and emissions of its gaseous products can still not be satisfactorily predicted. While the impact of single environmental parameters is well understood, the complexity of the process itself with its intricate cellular regulation in response to highly variable factors in the soil matrix prevents robust prediction of gaseous emissions. Key parameters in soil are pO2, organic matter content and quality, pH and the microbial community structure, which in turn are affected by the soil structure, chemistry and soil-plant interactions. In the DASIM research unit, we aim at the quantitative prediction of denitrification rates as a function of microscale soil structure, organic matter quality, DRPs and atmospheric boundary conditions via a combination of state-of-the-art experimental and analytical tools (X-ray μCT, 15N tracing, NanoSIMS, microsensors, advanced flux detection, NMR spectroscopy, and molecular methods including next generation sequencing of functional gene transcripts). We actively seek collaboration with researchers working in the field of denitrification.

  11. Characteristics of a Novel Aerobic Denitrifying Bacterium, Enterobacter cloacae Strain HNR.

    PubMed

    Guo, Long-Jie; Zhao, Bin; An, Qiang; Tian, Meng

    2016-03-01

    A novel aerobic denitrifier strain HNR, isolated from activated sludge, was identified as Enterobacter cloacae by16S rRNA sequencing analysis. Glucose was considered as the most favorable C-source for strain HNR. The logistic equation well described the bacterial growth, yielding a maximum growth rate (μmax) of 0.283 h(-1) with an initial NO3 (-)-N concentration of 110 mg/L. Almost all NO3 (-)-N was removed aerobically within 30 h with an average removal rate of 4.58 mg N L(-1) h(-1). Nitrogen balance analysis revealed that proximately 70.8 % of NO3 (-)-N was removed as gas products and only 20.7 % was transformed into biomass. GC-MS result indicates that N2 was the end product of aerobic denitrification. The enzyme activities of nitrate reductase and nitrite reductase, which are related to the process of aerobic denitrification, were 0.0688 and 0.0054 U/mg protein, respectively. Thus, the aerobic denitrification of reducing NO3 (-) to N2 by strain HNR was demonstrated. The optimal conditions for nitrate removal were C/N ratio 13, pH value 8, shaking speed 127 rpm and temperature 30 °C. These findings show that E. cloacae strain HNR has a potential application on wastewater treatment to achieve nitrate removal under aerobic conditions.

  12. Energy transduction by anaerobic ferric iron respiration in Thiobacillus ferrooxidans

    SciTech Connect

    Pronk, J.T.; Liem, K.; Bos, P.; Kuenen, J.G. )

    1991-07-01

    Formate-grown cells of the obligately chemolithoautotrophic acidophile Thiobacillus ferrooxidans were capable of formate- and elemental sulfur-dependent reduction of ferric iron under anaerovic conditions. Under aerobic conditions, both oxygen and ferric iron could be simultaneously used as electron acceptors. To investigate whether anaerobic ferric iron respiration by T. ferrooxidans is an energy-transducing process, uptake of amino acids was studied. Glycine uptake by starved cells did not occur in the absence of an electron donor, neither under aerobic conditions nor under anaerobic conditions. Uptake of glycine could be driven by formate- and ferrous iron-dependent oxygen uptake. Under anaerobic conditions, ferric iron respiration with the electron donors formate and elemental sulfur could energize glycine uptake. Glycine uptake was inhibited by the uncoupler 2,4-dinitrophenol. The results indicate that anaerobic ferric iron respiration can contribute to the energy budget of T. ferrooxidans.

  13. Stream denitrification across biomes and its response to anthropogenic nitrate loading.

    PubMed

    Mulholland, Patrick J; Helton, Ashley M; Poole, Geoffrey C; Hall, Robert O; Hamilton, Stephen K; Peterson, Bruce J; Tank, Jennifer L; Ashkenas, Linda R; Cooper, Lee W; Dahm, Clifford N; Dodds, Walter K; Findlay, Stuart E G; Gregory, Stanley V; Grimm, Nancy B; Johnson, Sherri L; McDowell, William H; Meyer, Judy L; Valett, H Maurice; Webster, Jackson R; Arango, Clay P; Beaulieu, Jake J; Bernot, Melody J; Burgin, Amy J; Crenshaw, Chelsea L; Johnson, Laura T; Niederlehner, B R; O'Brien, Jonathan M; Potter, Jody D; Sheibley, Richard W; Sobota, Daniel J; Thomas, Suzanne M

    2008-03-13

    Anthropogenic addition of bioavailable nitrogen to the biosphere is increasing and terrestrial ecosystems are becoming increasingly nitrogen-saturated, causing more bioavailable nitrogen to enter groundwater and surface waters. Large-scale nitrogen budgets show that an average of about 20-25 per cent of the nitrogen added to the biosphere is exported from rivers to the ocean or inland basins, indicating that substantial sinks for nitrogen must exist in the landscape. Streams and rivers may themselves be important sinks for bioavailable nitrogen owing to their hydrological connections with terrestrial systems, high rates of biological activity, and streambed sediment environments that favour microbial denitrification. Here we present data from nitrogen stable isotope tracer experiments across 72 streams and 8 regions representing several biomes. We show that total biotic uptake and denitrification of nitrate increase with stream nitrate concentration, but that the efficiency of biotic uptake and denitrification declines as concentration increases, reducing the proportion of in-stream nitrate that is removed from transport. Our data suggest that the total uptake of nitrate is related to ecosystem photosynthesis and that denitrification is related to ecosystem respiration. In addition, we use a stream network model to demonstrate that excess nitrate in streams elicits a disproportionate increase in the fraction of nitrate that is exported to receiving waters and reduces the relative role of small versus large streams as nitrate sinks.

  14. Stream denitrification across biomes and its response to anthropogenic nitrate loading

    USGS Publications Warehouse

    Mulholland, P.J.; Helton, A.M.; Poole, G.C.; Hall, R.O.; Hamilton, S.K.; Peterson, B.J.; Tank, J.L.; Ashkenas, L.R.; Cooper, L.W.; Dahm, Clifford N.; Dodds, W.K.; Findlay, S.E.G.; Gregory, S.V.; Grimm, N. B.; Johnson, S.L.; McDowell, W.H.; Meyer, J.L.; Valett, H.M.; Webster, J.R.; Arango, C.P.; Beaulieu, J.J.; Bernot, M.J.; Burgin, A.J.; Crenshaw, C.L.; Johnson, L.T.; Niederlehner, B.R.; O'Brien, J. M.; Potter, J.D.; Sheibley, R.W.; Sobota, D.J.; Thomas, S.M.

    2008-01-01

    Anthropogenic addition of bioavailable nitrogen to the biosphere is increasing and terrestrial ecosystems are becoming increasingly nitrogen-saturated, causing more bioavailable nitrogen to enter groundwater and surface waters. Large-scale nitrogen budgets show that an average of about 20-25 per cent of the nitrogen added to the biosphere is exported from rivers to the ocean or inland basins, indicating that substantial sinks for nitrogen must exist in the landscape. Streams and rivers may themselves be important sinks for bioavailable nitrogen owing to their hydrological connections with terrestrial systems, high rates of biological activity, and streambed sediment environments that favour microbial denitrification. Here we present data from nitrogen stable isotope tracer experiments across 72 streams and 8 regions representing several biomes. We show that total biotic uptake and denitrification of nitrate increase with stream nitrate concentration, but that the efficiency of biotic uptake and denitrification declines as concentration increases, reducing the proportion of in-stream nitrate that is removed from transport. Our data suggest that the total uptake of nitrate is related to ecosystem photosynthesis and that denitrification is related to ecosystem respiration. In addition, we use a stream network model to demonstrate that excess nitrate in streams elicits a disproportionate increase in the fraction of nitrate that is exported to receiving waters and reduces the relative role of small versus large streams as nitrate sinks. ??2008 Nature Publishing Group.

  15. Relative rates of nitric oxide and nitrous oxide production by nitrifiers, denitrifiers, and nitrate respirers. [Pseudomonas fluorescens; Serratia marcescens; Alcaligenes faecalis

    SciTech Connect

    Anderson, I.C.; Levine, J.S.

    1986-05-01

    The authors investigated the effect of the partial pressure of oxygen (pO/sub 2/) on the production of NO and N/sub 2/O by a wide variety of common soil nitrifying, denitrifying, and nitrate-respiring bacteria under laboratory conditions. The production of NO per cell was highest by autotrophic nitrifiers and was independent of pO/sub 2/ in the range tested (0.5 to 10%), whereas N/sub 2/O production was inversely proportional to pO/sub 2/. Nitrous oxide production was highest in the denitrifier Pseudomonas fluorescens, but only under anaerobic conditions. The molar ratio of NO/N/sub 2/O produced was usually greater than unity for nitrifiers and much less than unity for denitrifiers. Chemodenitrification was the major source of both the NO and N/sub 2/O produced by the nitrate respirer Serratia marcescens. Chemodenitrification was also a possible source of NO and N/sub 2/O produced by the nitrate respirer Serratia marcescens. Chemodenitrification was also a possible source of No and N/sub 2/O in nitrifier cultures but only when high concentrations of nitrite had accumulated or were added to the medium. Although most of the denitrifiers produced NO and N/sub 2/O only under anaerobic conditions, chemostat cultures of Alcaligenes faecalis continued to emit these gases even when the cultures were sprayed with air. Based upon these results, we predict that aerobic soils are primary sources of NO and that N/sub 2/O is produced only when there is sufficient soil moisture to provide the anaerobic microsites necessary for denitrification by either denitrifiers or nitrifiers.

  16. Denitrification in marine shales in northeastern Colorado

    USGS Publications Warehouse

    McMahon, P.B.; Böhlke, J.K.; Bruce, B.W.

    1999-01-01

    Parts of the South Platte River alluvial aquifer in northeastern Colorado are underlain by the Pierre Shale, a marine deposit of Late Cretaceous age that is <1000 m thick. Ground water in the aquifer is contaminated with NO3/-, and the shale contains abundant potential electron donors for denitrification in the forms of organic carbon and sulfide minerals. Nested piezometers were sampled, pore water was squeezed from cores of shale, and an injection test was conducted to determine if denitrification in the shale was a sink for alluvial NO3/- and to measure denitrification rates in the shale. Measured values of NO3/-, N2, NH4/+, ??15[NO3/-], ??15N[N2], and ??15N[NH4/+] in the alluvial and shale pore water indicated that denitrification in the shale was a sink for alluvial NO3/-. Chemical gradients, reaction rate constants, and hydraulic head data indicated that denitrification in the shale was limited by the slow rate of NO3/- transport (possibly by diffusion) into the shale. The apparent in situ first-order rate constant for denitrification in the shale based on diffusion calculations was of the order of 0.04-0.4 yr-1, whereas the potential rate constant in the shale based on injection tests was of the order of 60 yr-1. Chemical data and mass balance calculations indicate that organic carbon was the primary electron donor for denitrification in the shale during the injection test, and ferrous iron was a minor electron donor in the process. Flux calculations for the conditions encountered at the site indicate that denitrification in the shale could remove only a small fraction of the annual agricultural NO3/- input to the alluvial aquifer. However, the relatively large potential first-order rate constant for denitrification in the shale indicated that the percentage of NO3/- uptake by the shale could be considerably larger in areas where NO3/- is transported more rapidly into the shale by advection.

  17. The kinetics of denitrification in permeable sediments

    NASA Astrophysics Data System (ADS)

    Evrard, Victor; Glud, Ronnie N.; Cook, Perran L. M.

    2013-04-01

    Permeable sediments comprise the majority of shelf sediments, yet the rates of denitrification remain highly uncertain in these environments. Computational models are increasingly being used to understand the dynamics of denitrification in permeable sediments, which are complex environments to study experimentally. The realistic implementation of such models requires reliable experimentally derived data on the kinetics of denitrification. Here we undertook measurements of denitrification kinetics as a function of nitrate concentration and in the presence and absence of oxygen, in carefully controlled flow through reactor experiments on sediments taken from six shallow coastal sites in Port Phillip Bay, Victoria, Australia. The results showed that denitrification commenced rapidly (within 30 min) after the onset of anoxia and the kinetics could be well described by Michaelis-Menten kinetics with half saturation constants (apparent Km) ranging between 1.5 and 19.8 μM, and maximum denitrification rate (Vmax) were in the range of 0.9-7.5 nmol mL-1 h-1. The production of N2 through anaerobic ammonium oxidation (anammox) was generally found to be less than 10% that of denitrification. Vmax were in the same range as previously reported in cohesive sediments despite organic carbon contents one order of magnitude lower for the sediments studied here. The ratio of sediment O2 consumption to Vmax was in the range of 0.02-0.09, and was on average much lower than the theoretical ratio of 0.8. The most likely explanation for this is that the microbial community is not able to instantaneously shift or optimally use a particular electron acceptor in the highly dynamic redox environment experienced in permeable sediments. Consistent with this explanation, subsequent longer-term experiments over 5 days showed that denitrification rates increased by a factor of 10 within 3 days of the permanent onset of anoxia. In contrast to previous studies, we did not observe any significant

  18. Comparison of aerobic and anaerobic biotreatment of municipal solid waste.

    PubMed

    Borglin, Sharon E; Hazen, Terry C; Oldenburg, Curtis M; Zawislanski, Peter T

    2004-07-01

    To increase the operating lifetime of landfills and to lower leachate treatment costs, an increasing number of municipal solid waste (MSW) landfills are being managed as either aerobic or anaerobic bioreactors. Landfill gas composition, respiration rates, and subsidence were measured for 400 days in 200-L tanks filled with fresh waste materials to compare the relative effectiveness of the two treatments. Tanks were prepared to provide the following conditions: (1) air injection and leachate recirculation (aerobic), (2) leachate recirculation (anaerobic), and (3) no treatment (anaerobic). Respiration tests on the aerobic wet tank showed a steady decrease in oxygen consumption rates from 1.3 mol/day at 20 days to 0.1 mol/day at 400 days. Aerobic wet tanks produced, on average, 6 mol of carbon dioxide (CO2)/kg of MSW as compared with anaerobic wet tanks, which produced 2.2 mol methane/kg of MSW and 2.0 mol CO2/kg methane. Over the test period, the aerobic tanks settled on average 35%, anaerobic tanks settled 21.7%, and the no-treatment tank settled 7.5%, equivalent to overall mass loss in the corresponding reactors. Aerobic tanks reduced stabilization time and produced negligible odor compared with anaerobic tanks, possibly because of the 2 orders of magnitude lower leachate ammonia levels in the aerobic tank. Both treatment regimes provide the opportunity for disposal and remediation of liquid waste.

  19. Evidence of nitrification and denitrification in high and low microbial abundance sponges.

    PubMed

    Schläppy, Marie-Lise; Schöttner, Sandra I; Lavik, Gaute; Kuypers, Marcel M M; de Beer, Dirk; Hoffmann, Friederike

    2010-01-01

    Aerobic and anaerobic microbial key processes were quantified and compared to microbial numbers and morphological structure in Mediterranean sponges. Direct counts on histological sections stained with DAPI showed that sponges with high microbial abundances (HMA sponges) have a denser morphological structure with a reduced aquiferous system compared to low microbial abundance (LMA) sponges. In Dysidea avara, the LMA sponge, rates of nitrification and denitrification were higher than in the HMA sponge Chondrosia reniformis, while anaerobic ammonium oxidation and sulfate reduction were below detection in both species. This study shows that LMA sponges may host physiologically similar microbes with comparable or even higher metabolic rates than HMA sponges, and that anaerobic processes such as denitrification can be found both in HMA and LMA sponges. A higher concentration of microorganisms in the mesohyl of HMA compared to LMA sponges may indicate a stronger retention of and, hence, a possible benefit from associated microbes.

  20. Hydrogenotrophic denitrification of highly saline aquaculture wastewater using hollow fiber membrane bioreactor.

    PubMed

    Visvanathan, C; Phong, D D; Jegatheesan, V

    2008-06-01

    A hydrogenotrophic denitrification system with a hollow fiber membrane was evaluated for treating and recycling synthetic aquaculture wastewater. Hollow fibers ensured bubble-less diffusion of hydrogen and subsequent removal of nitrate from the first bioreactor. The second aerobic reactor was used for biomass filtration and removal of organic matter. Nitrate and organic matter expressed as dissolved organic carbon were 50 mgl(-1) and 20 mgl(-1), respectively, in the inlet. Acclimatization of hydrogenotrophic bacteria to 10, 20 and 30 ppt of salinity was also observed. Optimum hydraulic retention time and denitrification rate corresponding to these salinities were 3, 5 and 6 h and 366.8, 226.2 and 193.2 gm(-3) day(-1), respectively. PMID:18702296

  1. Hydrogenotrophic denitrification of highly saline aquaculture wastewater using hollow fiber membrane bioreactor.

    PubMed

    Visvanathan, C; Phong, D D; Jegatheesan, V

    2008-06-01

    A hydrogenotrophic denitrification system with a hollow fiber membrane was evaluated for treating and recycling synthetic aquaculture wastewater. Hollow fibers ensured bubble-less diffusion of hydrogen and subsequent removal of nitrate from the first bioreactor. The second aerobic reactor was used for biomass filtration and removal of organic matter. Nitrate and organic matter expressed as dissolved organic carbon were 50 mgl(-1) and 20 mgl(-1), respectively, in the inlet. Acclimatization of hydrogenotrophic bacteria to 10, 20 and 30 ppt of salinity was also observed. Optimum hydraulic retention time and denitrification rate corresponding to these salinities were 3, 5 and 6 h and 366.8, 226.2 and 193.2 gm(-3) day(-1), respectively.

  2. Use of low frequency and density ultrasound to stimulate partial nitrification and simultaneous nitrification and denitrification.

    PubMed

    Zheng, Min; Liu, Yan-chen; Xu, Kang-ning; Wang, Cheng-wen; He, Hui; Zhu, Wei; Dong, Qian

    2013-10-01

    Low frequency and density ultrasound has attracted considerable attention in enhancing wastewater treatment performance, particularly in the removal of nitrogen. In the present study, two sequencing batch reactors were operated to confirm the effects of ultrasound at the frequency of 40 kHz and density of 0.027 W/mL on partial nitrification and simultaneous nitrification and denitrification (SND). At the optimal irradiation time of 2.0 h, the obtained nitrite accumulation ratio and SND efficiency at full aerobic were 73.9% and 72.8%, respectively. Nitrite accumulation was the result of increased NH4(+)-N removal and improved ammonia oxidizing bacteria (AOB) activity with simultaneous inhibition of nitrite oxidizing bacteria (NOB) activity. Ultrasonic treatment could provide suitable conditions in temperature and pH for AOB growth, and destroy the NOB community structure. Moreover, organic matters were released and offered an additional carbon source for denitrification apart from the negative effects on sludge properties.

  3. Meiofauna increases bacterial denitrification in marine sediments

    PubMed Central

    Bonaglia, S.; Nascimento, F. J. A; Bartoli, M.; Klawonn, I.; Brüchert, V.

    2014-01-01

    Denitrification is a critical process that can alleviate the effects of excessive nitrogen availability in aquatic ecosystems subject to eutrophication. An important part of denitrification occurs in benthic systems where bioturbation by meiofauna (invertebrates <1 mm) and its effect on element cycling are still not well understood. Here we study the quantitative impact of meiofauna populations of different abundance and diversity, in the presence and absence of macrofauna, on nitrate reduction, carbon mineralization and methane fluxes. In sediments with abundant and diverse meiofauna, denitrification is double that in sediments with low meiofauna, suggesting that meiofauna bioturbation has a stimulating effect on nitrifying and denitrifying bacteria. However, high meiofauna densities in the presence of bivalves do not stimulate denitrification, while dissimilatory nitrate reduction to ammonium rate and methane efflux are significantly enhanced. We demonstrate that the ecological interactions between meio-, macrofauna and bacteria are important in regulating nitrogen cycling in soft-sediment ecosystems. PMID:25318852

  4. Biological denitrification of high concentration nitrate waste

    DOEpatents

    Francis, Chester W.; Brinkley, Frank S.

    1977-01-01

    Biological denitrification of nitrate solutions at concentrations of greater than one kilogram nitrate per cubic meter is accomplished anaerobically in an upflow column having as a packing material a support for denitrifying bacteria.

  5. Marinobacter strain NNA5, a newly isolated and highly efficient aerobic denitrifier with zero N2O emission.

    PubMed

    Liu, Ying; Ai, Guo-Min; Miao, Li-Li; Liu, Zhi-Pei

    2016-04-01

    An efficient aerobic denitrification bacterium, strain NNA5, was isolated and identified as Marinobacter sp. NNA5. NNA5 did not perform heterotrophic nitrification. GC/IRMS analysis revealed that (15)N2 was produced from Na(15)NO2 and K(15)NO3. GC/MS and quantitative analyses showed that no N2O emission occurred when nitrite or nitrate was used as substrate. Single factor experiments indicated that optimal conditions for aerobic denitrification were: sodium succinate or sodium pyruvate as carbon source, temperature 35 °C, NaCl concentration 2-4%, C/N ratio 6-8, pH 7.5, rotation speed 150 rpm (giving dissolved oxygen concentration 6.08 mg/L), NO3(-)-N concentration ranging from 140 to 700 mg/L. NNA5 displayed highly efficient aerobic denitrifying ability, with maximal NO3(-)-N removal rate 112.8 mg/L/d. In view of its ability to perform aerobic denitrification with zero N2O emission, NNA5 has great potential for future application in aerobic denitrification processes in industrial and aquaculture wastewater treatment systems. PMID:26836845

  6. Chemoautotrophic production and respiration in the hyporheic zone of a sonoran desert stream

    SciTech Connect

    Jones, J.B. Jr.; Holmes, R.M.; Fisher, S.G.; Grimm, N.B.

    1994-12-31

    Chemoautotrophic production and respiration (aerobic and anaerobic) were examined along flowpaths in three subsystems in Sycamore Creek, Arizona. Chemoautotrophic production was highest where surface waters enter parafluvial sediments (64 to 76 mgC{center_dot}m{sup {minus}2}{center_dot}d{sup {minus}1}) and lowest in anoxic bank sediments (14 to 16 mgC{center_dot}m{sup {minus}2}{center_dot}d{sup {minus}1}). Aerobic respiration was considerable greater than chemoautotrophy in oxygenated hyporheic and parafluvial zones (2,400 to 4,900 mgC{center_dot}m{sup {minus}2}{center_dot}d{sup {minus}1}). In anoxic bank sediments, respiration was also much greater than chemoautotrophy, but was entirely anaerobic (i.e., methane production; 3,500 mgC{center_dot}m{sup {minus}2}{center_dot}d{sup {minus}1}). Weighting subsystems by areal extent, the largest proportion of aerobic respiration and chemoautotrophic production occurred in parafluvial sediments (64 to 76%), whereas anoxic bank sediments were most important for anaerobic respiration (94% of total anaerobic respiration). Overall, chemoautotrophic production was only 1.0 to 1.3% of respiration and methane production was only 5% of total sediment respiration.

  7. Effects of bioirrigation of non-biting midges (Diptera: Chironomidae) on lake sediment respiration.

    PubMed

    Baranov, Viktor; Lewandowski, Jörg; Romeijn, Paul; Singer, Gabriel; Krause, Stefan

    2016-01-01

    Bioirrigation or the transport of fluids into the sediment matrix due to the activities of organisms such as bloodworms (larvae of Diptera, Chironomidae), has substantial impacts on sediment respiration in lakes. However, previous quantifications of bioirrigation impacts of Chironomidae have been limited by technical challenges such as the difficulty to separate faunal and bacterial respiration. This paper describes a novel method based on the bioreactive tracer resazurin for measuring respiration in-situ in non-sealed systems with constant oxygen supply. Applying this new method in microcosm experiments revealed that bioirrigation enhanced sediment respiration by up to 2.5 times. The new method is yielding lower oxygen consumption than previously reported, as it is only sensitive to aerobic heterotrophous respiration and not to other processes causing oxygen decrease. Hence it decouples the quantification of respiration of animals and inorganic oxygen consumption from microbe respiration in sediment. PMID:27256514

  8. Effects of bioirrigation of non-biting midges (Diptera: Chironomidae) on lake sediment respiration

    PubMed Central

    Baranov, Viktor; Lewandowski, Jörg; Romeijn, Paul; Singer, Gabriel; Krause, Stefan

    2016-01-01

    Bioirrigation or the transport of fluids into the sediment matrix due to the activities of organisms such as bloodworms (larvae of Diptera, Chironomidae), has substantial impacts on sediment respiration in lakes. However, previous quantifications of bioirrigation impacts of Chironomidae have been limited by technical challenges such as the difficulty to separate faunal and bacterial respiration. This paper describes a novel method based on the bioreactive tracer resazurin for measuring respiration in-situ in non-sealed systems with constant oxygen supply. Applying this new method in microcosm experiments revealed that bioirrigation enhanced sediment respiration by up to 2.5 times. The new method is yielding lower oxygen consumption than previously reported, as it is only sensitive to aerobic heterotrophous respiration and not to other processes causing oxygen decrease. Hence it decouples the quantification of respiration of animals and inorganic oxygen consumption from microbe respiration in sediment. PMID:27256514

  9. Modeling nitrate removal in a denitrification bed.

    PubMed

    Ghane, Ehsan; Fausey, Norman R; Brown, Larry C

    2015-03-15

    Denitrification beds are promoted to reduce nitrate load in agricultural subsurface drainage water to alleviate the adverse environmental effects associated with nitrate pollution of surface water. In this system, drainage water flows through a trench filled with a carbon media where nitrate is transformed into nitrogen gas under anaerobic conditions. The main objectives of this study were to model a denitrification bed treating drainage water and evaluate its adverse greenhouse gas emissions. Field experiments were conducted at an existing denitrification bed. Evaluations showed very low greenhouse gas emissions (mean N2O emission of 0.12 μg N m(-2) min(-1)) from the denitrification bed surface. Field experiments indicated that nitrate removal rate was described by Michaelis-Menten kinetics with the Michaelis-Menten constant of 7.2 mg N L(-1). We developed a novel denitrification bed model based on the governing equations for water flow and nitrate removal kinetics. The model evaluation statistics showed satisfactory prediction of bed outflow nitrate concentration during subsurface drainage flow. The model can be used to design denitrification beds with efficient nitrate removal which in turn leads to enhanced drainage water quality. PMID:25638338

  10. Denitrification inhibition by high nitrate wastes

    SciTech Connect

    Veydovec, W.; Silverstein, J.; Cook, N.E. Jr.; Figueroa, L.A.; Hund, R.; Lehmkuhl, G.D.

    1994-12-31

    The processing of radioactive metal products at nuclear weapons plants and research labs has produced wastewaters containing high concentrations of nitrate, often greater than 50,000 mg/l N. The adaptation of activated sludge and inhibition of denitrification at high nitrate concentrations was studied using pH controlled bench-scale sequencing batch reactors (SBRs), operated with 50% of the SBR volume recycled (recycle volume = influent volume). Denitrification of 1,350 and 2,700 mg/l NO{sub 3}{sup {minus}}-N was completed after approximately 5 hours and 15 hours, respectively. No denitrification of 5,400 mg/l NO{sub 3}{sup {minus}}-N was observed. These results suggest that there is a progressive inhibition of denitrification as nitrate concentrations increase from 1,350 to 5,400 mg/l NO{sub 3}{sup {minus}}-N. In a subsequent series of experiments at an initial reactor nitrate concentration of 1,350 mg/l N, a significant accumulation of nitrate was observed, resulting once in destabilization with loss of denitrification and once in successful adaptation of the activated sludge. At a nitrate concentration of 1,350 mg/l N, the adaptation of activated sludge appears to be unstable, resulting sometimes in stable denitrification and sometimes in biomass washout.

  11. Transferable Denitrification Capability of Thermus thermophilus

    PubMed Central

    Alvarez, Laura; Bricio, Carlos; Blesa, Alba; Hidalgo, Aurelio

    2014-01-01

    Laboratory-adapted strains of Thermus spp. have been shown to require oxygen for growth, including the model strains T. thermophilus HB27 and HB8. In contrast, many isolates of this species that have not been intensively grown under laboratory conditions keep the capability to grow anaerobically with one or more electron acceptors. The use of nitrogen oxides, especially nitrate, as electron acceptors is one of the most widespread capabilities among these facultative strains. In this process, nitrate is reduced to nitrite by a reductase (Nar) that also functions as electron transporter toward nitrite and nitric oxide reductases when nitrate is scarce, effectively replacing respiratory complex III. In many T. thermophilus denitrificant strains, most electrons for Nar are provided by a new class of NADH dehydrogenase (Nrc). The ability to reduce nitrite to NO and subsequently to N2O by the corresponding Nir and Nor reductases is also strain specific. The genes encoding the capabilities for nitrate (nar) and nitrite (nir and nor) respiration are easily transferred between T. thermophilus strains by natural competence or by a conjugation-like process and may be easily lost upon continuous growth under aerobic conditions. The reason for this instability is apparently related to the fact that these metabolic capabilities are encoded in gene cluster islands, which are delimited by insertion sequences and integrated within highly variable regions of easily transferable extrachromosomal elements. Together with the chromosomal genes, these plasmid-associated genetic islands constitute the extended pangenome of T. thermophilus that provides this species with an enhanced capability to adapt to changing environments. PMID:24141123

  12. [Temporal-spatial distribution of agricultural diffuse nitrogen pollution and relationship with soil respiration and nitrification].

    PubMed

    Wei, Ouyang; Cai, Guan-Qing; Huang, Hao-Bo; Geng, Xiao-Jun

    2014-06-01

    The soil respiration, nitrification and denitrification processes play an important role on soil nitrogen transformation and diffuse nitrogen loading. These processes are also the chains for soil circle. In this study, the Zhegao watershed located north of Chaohu Lake was selected to explore the interactions of these processes with diffuse nitrogen pollution. The BaPS (Barometric Process Separation) was applied to analyze the soil respiration, nitrification and denitrification processes in farmland and forest. The SWAT (Soil and Water Assessment Tool) simulated the temporal and spatial pattern of diffuse nitrogen loading. As the expanding of farmland and higher level of fertilization, the yearly mean loading of diffuse nitrogen increased sustainably from 1980-1995 to 1996-2012. The monthly loading in 1996-2012 was also higher than that in the period of 1980-1995, which closely related to the precipitation. The statistical analysis indicated that there was a significant difference between two periods. The yearly averaged loading of the whole watershed in 1996-2012 was 10.40 kg x hm(-2), which was 8.10 kg x hm(-2) in 1980-1995. The variance analysis demonstrated that there was also a big difference between the spatial distributions of two periods. The forest soil had much higher soil respiration than the farmland soil. But the farmland had higher nitrification and denitrification rates. The more intensive nitrogen transformation in the farmland contributed to the less diffuse nitrogen loading. As the nitrification rate of farmland was higher than denitrification rate, agricultural diffuse nitrate nitrogen loading would increase and organic nitrogen loading would reduce. The analysis of soil respiration, nitrification and denitrification is helpful for the study of soil nitrogen circle form the aspect of soil biology, which also benefits the control of agricultural diffuse nitrogen pollution.

  13. Optimization and evaluation of a bottom substrate denitrification tank for nitrate removal from a recirculating aquaculture system.

    PubMed

    Pungrasmi, Wiboonluk; Playchoom, Cholticha; Powtongsook, Sorawit

    2013-08-01

    A bottom substrate denitrification tank for a recirculating aquaculture system was developed. The laboratory scale denitrification tank was an 8 L tank (0.04 m2 tank surface area), packed to a depth of 5 cm with a bottom substrate for natural denitrifying bacteria. An aquarium pump was used for gentle water mixing in the tank; the dissolved oxygen in the water was maintained in aerobic conditions (e.g. > 2 mg/L) while anoxic conditions predominated only at the bottom substrate layer. The results showed that, among the four substrates tested (soil, sand, pumice stone and vermiculite), pumice was the most preferable material. Comparing carbon supplementation using methanol and molasses, methanol was chosen as the carbon source because it provided a higher denitrification rate than molasses. When methanol was applied at the optimal COD:N ratio of 5:1, a nitrate removal rate of 4591 +/- 133 mg-N/m2 tank bottom area/day was achieved. Finally, nitrate removal using an 80 L denitrification tank was evaluated with a 610 L recirculating tilapia culture system. Nitrate treatment was performed by batch transferring high nitrate water from the nitrification tank into the denitrification tank and mixing with methanol at a COD:N ratio of 5:1. The results from five batches of nitrate treatment revealed that nitrate was successfully removed from water without the accumulation of nitrite and ammonia. The average nitrate removal efficiency was 85.17% and the average denitrification rate of the denitrification tank was 6311 +/- 945 mg-N/m2 tank bottom area/day or 126 +/- 18 mg-N/L of pumice packing volume/day. PMID:24520693

  14. Barometric process separation: New method for quantifying nitrification, denitrification, and nitrous oxide sources in soils

    SciTech Connect

    Ingwersen, J.; Butterbach-Bahl, K.; Gasche, R.; Papen, H.; Richter, O.

    1999-01-01

    A method, Barometric Process Separation (BaPS), was developed for the quantification of gross nitrification rates and denitrification rates in oxic soil using intact soil cores incubated in an isothermal gas tight system. Gross nitrification rates and denitrification rates are derived from measurements of changes (i) in air pressure within the closed system, which are primarily the result of the activities of nitrification, denitrification, and respiration, and (2) of O{sub 2} and CO{sub 2} concentrations in the system. Besides these biological processes, the contribution of physicochemical dissolution of produced CO{sub 2} in soil water to the pressure changes observed is to be considered. The method allows collection of additional information about the contribution of nitrification and denitrification to N{sub 2}O emission from soil, provided simultaneous measurements of N{sub 2}O emission are performed. Furthermore, BaPS can be used to quantify the percentage of N{sub 2}O lost from nitrification. The advantage of BaPS is that disturbance of the soil system is minimized compared with other methods such as the use of gaseous inhibitors (e.g., acetylene) or application of {sup 15}N compounds to the soil. The authors present the theoretical considerations of BaPS, results for nitrification rates, denitrification rates, and identification of soil N{sub 2}O sources in a well-aerated coniferous forest soil using BaPS. The suitability of BaPS as a method for determination of gross nitrification is demonstrated by validation experiments using the {sup 15}N-pool dilution technique.

  15. Influence of porewater advection on denitrification in carbonate sands: Evidence from repacked sediment column experiments

    NASA Astrophysics Data System (ADS)

    Santos, Isaac R.; Eyre, Bradley D.; Glud, Ronnie N.

    2012-11-01

    Porewater flow enhances mineralization rates in organic-poor permeable sands. Here, a series of sediment column experiments were undertaken to assess the potential effect of advective porewater transport on denitrification in permeable carbonate sands collected from Heron Island (Great Barrier Reef). Experimental conditions (flow path length, advection rate, and temperature) were manipulated to represent conditions similar to near shore tropical environments. HgCl2-poisoned controls were used to assess whether reactions were microbially mediated. Overall, significant correlations were found between oxygen consumption and N2 production. The N:O2 slope of 0.114 implied that about 75% of all the nitrogen mineralized was denitrified. A 4-fold increase in sediment column length (from 10 to 40 cm) resulted in an overall increase in oxygen consumption (1.6-fold), TCO2 production (1.8-fold), and denitrification (1.9-fold). Oxic respiration increased quickly until advection reached 80 L m-2 h-1 and then plateaued at higher advection rates. Interestingly, denitrification peaked (up to 336 μmol N2 m-2 h-1) at intermediate advection rates (30-80 L m-2 h-1). We speculate that intermediate advection rates enhance the development of microniches (i.e., steep oxygen gradients) within porous carbonate sands, perhaps providing optimum conditions for denitrification. The denitrification peak fell within the broad range of advection rates (often on scales of 1-100 L m-2 h-1) typically found on continental shelves implying that carbonate sands may play a major, but as yet unquantified, role in oceanic nitrogen budgets.

  16. Denitrification of agricultural drainage line water via immobilized denitrification sludge.

    PubMed

    Hunt, Patrick G; Matheny, Terry A; Ro, Kyoung S; Stone, Kenneth C; Vanotti, Matias B

    2008-07-15

    Nonpoint source nitrogen is recognized as a significant water pollutant worldwide. One of the major contributors is agricultural drainage line water. A potential method of reducing this nitrogen discharge to water bodies is the use of immobilized denitrifying sludge (IDS). Our objectives were to (1) produce an effective IDS, (2) determine the IDS reaction kinetics in laboratory column bioreactors, and (3) test a field bioreactor for nitrogen removal from agricultural drainage line water. We developed a mixed liquor suspended solid (MLSS) denitrifying sludge using inoculant from an overland flow treatment system. It had a specific denitrification rate of 11.4 mg NO(3)-N g(-1) MLSS h(-1). We used polyvinyl alcohol (PVA) to immobilize this sludge and form IDS pellets. When placed in a 3.8-L column bioreactor, the IDS had a maximum removal rate (K(MAX)) of 3.64 mg NO(3)-N g(-1) pellet d(-1). In a field test with drainage water containing 7.8 mg NO(3)-N L(-1), 50% nitrogen removal was obtained with a 1 hr hydraulic retention time. Expressed as a 1 m(3) cubically-shaped bioreactor, the nitrogen removal rate would be 94 g NO(3)-N m(-2)d(-1), which is dramatically higher than treatment wetlands or passive carbonaceous bioreactors. IDS bioreactors offer potential for reducing nitrogen discharge from agricultural drainage lines. More research is needed to develop the bioreactors for agricultural use and to devise effective strategies for their implementation with other emerging technologies for improved water quality on both watershed and basin scales. PMID:18569323

  17. Denitrification of agricultural drainage line water via immobilized denitrification sludge.

    PubMed

    Hunt, Patrick G; Matheny, Terry A; Ro, Kyoung S; Stone, Kenneth C; Vanotti, Matias B

    2008-07-15

    Nonpoint source nitrogen is recognized as a significant water pollutant worldwide. One of the major contributors is agricultural drainage line water. A potential method of reducing this nitrogen discharge to water bodies is the use of immobilized denitrifying sludge (IDS). Our objectives were to (1) produce an effective IDS, (2) determine the IDS reaction kinetics in laboratory column bioreactors, and (3) test a field bioreactor for nitrogen removal from agricultural drainage line water. We developed a mixed liquor suspended solid (MLSS) denitrifying sludge using inoculant from an overland flow treatment system. It had a specific denitrification rate of 11.4 mg NO(3)-N g(-1) MLSS h(-1). We used polyvinyl alcohol (PVA) to immobilize this sludge and form IDS pellets. When placed in a 3.8-L column bioreactor, the IDS had a maximum removal rate (K(MAX)) of 3.64 mg NO(3)-N g(-1) pellet d(-1). In a field test with drainage water containing 7.8 mg NO(3)-N L(-1), 50% nitrogen removal was obtained with a 1 hr hydraulic retention time. Expressed as a 1 m(3) cubically-shaped bioreactor, the nitrogen removal rate would be 94 g NO(3)-N m(-2)d(-1), which is dramatically higher than treatment wetlands or passive carbonaceous bioreactors. IDS bioreactors offer potential for reducing nitrogen discharge from agricultural drainage lines. More research is needed to develop the bioreactors for agricultural use and to devise effective strategies for their implementation with other emerging technologies for improved water quality on both watershed and basin scales.

  18. Validating soil denitrification models based on laboratory N_{2} and N_{2}O fluxes and underlying processes derived by stable isotope approaches

    NASA Astrophysics Data System (ADS)

    Well, Reinhard; Böttcher, Jürgen; Butterbach-Bahl, Klaus; Dannenmann, Michael; Deppe, Marianna; Dittert, Klaus; Dörsch, Peter; Horn, Marcus; Ippisch, Olaf; Mikutta, Robert; Müller, Carsten; Müller, Christoph; Senbayram, Mehmet; Vogel, Hans-Jörg; Wrage-Mönnig, Nicole

    2016-04-01

    Robust denitrification data suitable to validate soil N2 fluxes in denitrification models are scarce due to methodical limitations and the extreme spatio-temporal heterogeneity of denitrification in soils. Numerical models have become essential tools to predict denitrification at different scales. Model performance could either be tested for total gaseous flux (NO + N2O + N2), individual denitrification products (e.g. N2O and/or NO) or for the effect of denitrification factors (e.g. C-availability, respiration, diffusivity, anaerobic volume, etc.). While there are numerous examples for validating N2O fluxes, there are neither robust field data of N2 fluxes nor sufficiently resolved measurements of control factors used as state variables in the models. To the best of our knowledge there has been only one published validation of modelled soil N2 flux by now, using a laboratory data set to validate an ecosystem model. Hence there is a need for validation data at both, the mesocosm and the field scale including validation of individual denitrification controls. Here we present the concept for collecting model validation data which is be part of the DFG-research unit "Denitrification in Agricultural Soils: Integrated Control and Modelling at Various Scales (DASIM)" starting this year. We will use novel approaches including analysis of stable isotopes, microbial communities, pores structure and organic matter fractions to provide denitrification data sets comprising as much detail on activity and regulation as possible as a basis to validate existing and calibrate new denitrification models that are applied and/or developed by DASIM subprojects. The basic idea is to simulate "field-like" conditions as far as possible in an automated mesocosm system without plants in order to mimic processes in the soil parts not significantly influenced by the rhizosphere (rhizosphere soils are studied by other DASIM projects). Hence, to allow model testing in a wide range of conditions

  19. Denitrification mechanism in combustion of biocoal briquettes.

    PubMed

    Kim, Heejoon; Li, Tianji

    2005-02-15

    Pulp black liquor (PBL), an industrial waste from paper production, has been previously shown to be an effective binder and denitrification agent for coal briquettes. This study investigated the denitrification mechanism of PBL in both the volatile combustion and char combustion stages of coal briquettes. X-ray diffraction and ion chromatography were used to analyze the residual ashes of combustion. The exhaust gas was analyzed by a flue gas analysis system and a Q-mass spectrometry system. The denitrification mechanism of PBL in the volatile combustion stage was found to result from the emission of NH3. The denitrification of PBL in the char combustion stage was associated with the NaOH contained in PBL. The direct reaction of NaOH with NO gas was examined, and some interesting phenomena were observed. Pure carbon or pure NaOH showed only limited reaction with NO. However, the mixture of NaOH and carbon (NaOH + C) significantly enhanced the reaction. This mixture increased the NO removal up to 100%. Subsequently, denitrification lasted for a long time period, with about 25% of NO removal. The pyrolysis characteristic of NaNO3, a compound resulting from denitrification, was also affected by the presence of carbon. In the presence of carbon, the NOx emission resulting from the pyrolysis of NaNO3 was reduced by a factor of 6. Since the denitrification phenomena appeared only in the absence of oxygen, a model of oxygen distribution in a burning coal briquette was employed to explain the reactions occurring in real combustion of coal briquettes.

  20. Denitrification mechanism in combustion of biocoal briquettes.

    PubMed

    Kim, Heejoon; Li, Tianji

    2005-02-15

    Pulp black liquor (PBL), an industrial waste from paper production, has been previously shown to be an effective binder and denitrification agent for coal briquettes. This study investigated the denitrification mechanism of PBL in both the volatile combustion and char combustion stages of coal briquettes. X-ray diffraction and ion chromatography were used to analyze the residual ashes of combustion. The exhaust gas was analyzed by a flue gas analysis system and a Q-mass spectrometry system. The denitrification mechanism of PBL in the volatile combustion stage was found to result from the emission of NH3. The denitrification of PBL in the char combustion stage was associated with the NaOH contained in PBL. The direct reaction of NaOH with NO gas was examined, and some interesting phenomena were observed. Pure carbon or pure NaOH showed only limited reaction with NO. However, the mixture of NaOH and carbon (NaOH + C) significantly enhanced the reaction. This mixture increased the NO removal up to 100%. Subsequently, denitrification lasted for a long time period, with about 25% of NO removal. The pyrolysis characteristic of NaNO3, a compound resulting from denitrification, was also affected by the presence of carbon. In the presence of carbon, the NOx emission resulting from the pyrolysis of NaNO3 was reduced by a factor of 6. Since the denitrification phenomena appeared only in the absence of oxygen, a model of oxygen distribution in a burning coal briquette was employed to explain the reactions occurring in real combustion of coal briquettes. PMID:15773493

  1. Aerobic N2O emission for activated sludge acclimated under different aeration rates in the multiple anoxic and aerobic process.

    PubMed

    Wang, Huoqing; Guan, Yuntao; Pan, Min; Wu, Guangxue

    2016-05-01

    Nitrous oxide (N2O) is a potent greenhouse gas that can be emitted during biological nitrogen removal. N2O emission was examined in a multiple anoxic and aerobic process at the aeration rates of 600mL/min sequencing batch reactor (SBRL) and 1200mL/min (SBRH). The nitrogen removal percentage was 89% in SBRL and 71% in SBRH, respectively. N2O emission mainly occurred during the aerobic phase, and the N2O emission factor was 10.1% in SBRL and 2.3% in SBRH, respectively. In all batch experiments, the N2O emission potential was high in SBRL compared with SBRH. In SBRL, with increasing aeration rates, the N2O emission factor decreased during nitrification, while it increased during denitrification and simultaneous nitrification and denitrification (SND). By contrast, in SBRH the N2O emission factor during nitrification, denitrification and SND was relatively low and changed little with increasing aeration rates. The microbial competition affected the N2O emission during biological nitrogen removal.

  2. Aerobic N2O emission for activated sludge acclimated under different aeration rates in the multiple anoxic and aerobic process.

    PubMed

    Wang, Huoqing; Guan, Yuntao; Pan, Min; Wu, Guangxue

    2016-05-01

    Nitrous oxide (N2O) is a potent greenhouse gas that can be emitted during biological nitrogen removal. N2O emission was examined in a multiple anoxic and aerobic process at the aeration rates of 600mL/min sequencing batch reactor (SBRL) and 1200mL/min (SBRH). The nitrogen removal percentage was 89% in SBRL and 71% in SBRH, respectively. N2O emission mainly occurred during the aerobic phase, and the N2O emission factor was 10.1% in SBRL and 2.3% in SBRH, respectively. In all batch experiments, the N2O emission potential was high in SBRL compared with SBRH. In SBRL, with increasing aeration rates, the N2O emission factor decreased during nitrification, while it increased during denitrification and simultaneous nitrification and denitrification (SND). By contrast, in SBRH the N2O emission factor during nitrification, denitrification and SND was relatively low and changed little with increasing aeration rates. The microbial competition affected the N2O emission during biological nitrogen removal. PMID:27155411

  3. Inhibition of denitrification by ultraviolet radiation.

    PubMed

    Mancinelli, R L; White, M R

    2000-01-01

    It has been shown that UV-A (lambda=320-400 nm) and UV-B (lambda=280-320 nm) inhibit photosynthesis, nitrogen fixation and nitrification. The purpose of this study was to determine the effects, if any, on denitrification in a microbial community inhabiting the intertidal. The community studied is the microbial mat consisting primarily of Lyngbya that inhabits the Pacific marine intertidal, Baja California, Mexico. Rates of denitrification were determined using the acetylene blockage technique. Pseudomonas fluorescens (ATCC #17400) was used as a control organism, and treated similarly to the mat samples. Samples were incubated either beneath a PAR transparent, UV opaque screen (OP3), or a mylar screen to block UV-B, or a UV transparent screen (UVT) for 2 to 3 hours. Sets of samples were also treated with nitrapyrin to inhibit nitrification, or DCMU to inhibit photosynthesis and treated similarly. Denitrification rates were greater in the UV protected samples than in the UV exposed samples the mat samples as well as for the Ps fluorescens cultures. Killed controls exhibited no activity. In the DCMU and nitrapyrin treated samples denitrification rates were the same as in the untreated samples. These data indicate that denitrification is directly inhibited by UV radiation.

  4. Inhibition of denitrification by ultraviolet radiation

    NASA Astrophysics Data System (ADS)

    Mancinelli, R. L.; White, M. R.

    It has been shown that UV-A (λ = 320- 400 nm) and UV-B (λ = 280 - 320 nm) inhibit photosynthesis, nitrogen fixation and nitrification. The purpose of this study was to determine the effects, if any, on denitrification in a microbial community inhabiting the intertidal. The community studied is the microbial mat consisting primarily of Lyngbya that inhabits the Pacific marine intertidal, Baja California, Mexico. Rates of denitrification were determined using the acetylene blockage technique. Pseudomonas fluorescens (ATCC # 17400) was used as a control organism, and treated similarly to the mat samples. Samples were incubated either beneath a PAR transparent, UV opaque screen (OP3), or a mylar screen to block UV-B, or a UV transparent screen (UVT) for 2 to 3 hours. Sets of samples were also treated with nitrapyrin to inhibit nitrification, or DCMU to inhibit photosynthesis and treated similarly. Denitrification rates were greater in the UV protected samples than in the UV exposed samples the mat samples as well as for the Ps. fluorescens cultures. Killed controls exhibited no activity. In the DCMU and nitrapyrin treated samples denitrification rates were the same as in the untreated samples. These data indicate that denitrification is directly inhibited by UV radiation.

  5. Inhibition of denitrification by ultraviolet radiation.

    PubMed

    Mancinelli, R L; White, M R

    2000-01-01

    It has been shown that UV-A (lambda=320-400 nm) and UV-B (lambda=280-320 nm) inhibit photosynthesis, nitrogen fixation and nitrification. The purpose of this study was to determine the effects, if any, on denitrification in a microbial community inhabiting the intertidal. The community studied is the microbial mat consisting primarily of Lyngbya that inhabits the Pacific marine intertidal, Baja California, Mexico. Rates of denitrification were determined using the acetylene blockage technique. Pseudomonas fluorescens (ATCC #17400) was used as a control organism, and treated similarly to the mat samples. Samples were incubated either beneath a PAR transparent, UV opaque screen (OP3), or a mylar screen to block UV-B, or a UV transparent screen (UVT) for 2 to 3 hours. Sets of samples were also treated with nitrapyrin to inhibit nitrification, or DCMU to inhibit photosynthesis and treated similarly. Denitrification rates were greater in the UV protected samples than in the UV exposed samples the mat samples as well as for the Ps fluorescens cultures. Killed controls exhibited no activity. In the DCMU and nitrapyrin treated samples denitrification rates were the same as in the untreated samples. These data indicate that denitrification is directly inhibited by UV radiation. PMID:12038490

  6. Using soil isotopes as an indicator of denitrification in weetlands

    EPA Science Inventory

    Denitrification is an important ecosystem service provided by wetlands, which results in removal of excess nitrogen that can threaten aquatic systems. Unfortunately, direct measurement of denitrification has traditionally been expensive, time intensive, and difficult. However, ...

  7. Respiration in Aquatic Insects.

    ERIC Educational Resources Information Center

    MacFarland, John

    1985-01-01

    This article: (1) explains the respiratory patterns of several freshwater insects; (2) describes the differences and mechanisms of spiracular cutaneous, and gill respiration; and (3) discusses behavioral aspects of selected aquatic insects. (ML)

  8. Stratospheric Polar Freezing Belt Causes Denitrification

    NASA Technical Reports Server (NTRS)

    Tabazadeh, A.; Jensen, E. J.; Toon, O. B.; Drdla, K.; Schoeberl, M. R.; Gore, Warren J. (Technical Monitor)

    2001-01-01

    Trajectory cloud model calculations are presented to show that homogeneous freezing of nitric acid hydrates can produce a polar freezing belt in both hemispheres that can cause denitrification. While hydrate cloud microphysical properties are similar over both poles, the shorter persistence of clouds in the Arctic prevents the depth of the denitrified layers from growing beyond a few kilometers. The 1999-2000 Arctic winter is unique in showing a distinct denitrification profile with a depth of approx. 4.5 km that is nearly half as deep as that computed for a typical Antarctic winter.

  9. Seasonal Patterns of Denitrification and Trace Gas Emissions in a Northern Hardwood Forest

    NASA Astrophysics Data System (ADS)

    Morse, J. L.; Durán, J.; Groffman, P. M.

    2012-12-01

    To determine denitrification rates and trace gas emissions in a northern hardwood forest (Hubbard Brook Experimental Forest, New Hampshire, USA), we conducted two years of seasonal chamber-based field gas flux measurements (carbon dioxide, methane, and nitrous oxide) and laboratory incubations to measure denitrification rates (nitrous oxide and dinitrogen) and carbon dioxide fluxes. We examined spatial and temporal dynamics of soil-atmosphere gas fluxes as well as relationships between environmental variables (soil moisture, soil temperature, and soil oxygen) and among the different gases. We found that denitrification in surface soils could be an important pathway for nitrogen loss in northern hardwood forest ecosystems, even if soils are rarely anoxic. While dinitrogen fluxes were particularly high during the snowmelt period, we did not see a pulse of nitrous oxide as a result of rapid soil warming as we had expected. Compared to cooler/wetter sites, we found that warmer/drier soils had higher soil respiration in early spring, but had stronger methane uptake and consistently lower nitrous oxide emissions throughout the year.

  10. Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen.

    PubMed

    Phillips, Rebecca; Grelet, Gwen; McMillan, Andrew; Song, Bongkeun; Weir, Bevan; Palmada, Thilak; Tobias, Craig

    2016-02-01

    Fungi may play an important role in the production of the greenhouse gas nitrous oxide (N2O). Bipolaris sorokiniana is a ubiquitous saprobe found in soils worldwide, yet denitrification by this fungal strain has not previously been reported. We aimed to test if B. sorokiniana would produce N2O and CO2 in the presence of organic and inorganic forms of nitrogen (N) under microaerobic and anaerobic conditions. Nitrogen source (organic-N, inorganic-N, no-N control) significantly affected N2O and CO2 production both in the presence and absence of oxygen, which contrasts with bacterial denitrification. Inorganic N addition increased denitrification of N2O (from 0 to 0.3 μg N20-N h(-1) g(-1) biomass) and reduced respiration of CO2 (from 0.1 to 0.02 mg CO2 h(-1) g(-1) biomass). Isotope analyses indicated that nitrite, rather than ammonium or glutamine, was transformed to N2O. Results suggest the source of N may play a larger role in fungal N2O production than oxygen status. PMID:26764425

  11. Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen.

    PubMed

    Phillips, Rebecca; Grelet, Gwen; McMillan, Andrew; Song, Bongkeun; Weir, Bevan; Palmada, Thilak; Tobias, Craig

    2016-02-01

    Fungi may play an important role in the production of the greenhouse gas nitrous oxide (N2O). Bipolaris sorokiniana is a ubiquitous saprobe found in soils worldwide, yet denitrification by this fungal strain has not previously been reported. We aimed to test if B. sorokiniana would produce N2O and CO2 in the presence of organic and inorganic forms of nitrogen (N) under microaerobic and anaerobic conditions. Nitrogen source (organic-N, inorganic-N, no-N control) significantly affected N2O and CO2 production both in the presence and absence of oxygen, which contrasts with bacterial denitrification. Inorganic N addition increased denitrification of N2O (from 0 to 0.3 μg N20-N h(-1) g(-1) biomass) and reduced respiration of CO2 (from 0.1 to 0.02 mg CO2 h(-1) g(-1) biomass). Isotope analyses indicated that nitrite, rather than ammonium or glutamine, was transformed to N2O. Results suggest the source of N may play a larger role in fungal N2O production than oxygen status.

  12. Co-occurring anammox, denitrification and codenitrification in agricultural soils

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Anammox and denitrification mediated by bacteria are known to be the major microbial processes converting fixed N to N2 gas in various ecosystems. Codenitrification and denitrification by fungi are additional pathways of generating N2 from soils. However, fungal codenitrification and denitrification...

  13. Suppression of N2O and NO from denitrification by biochar: the role of pH

    NASA Astrophysics Data System (ADS)

    Obia, Alfred; Cornelissen, Gerard; Mulder, Jan; Dörsch, Peter

    2015-04-01

    Denitrification reduces NO3- to N2 and returns excess nitrogen to the atmosphere. NO and N2O are gaseous intermediates of denitrification which, once escaped to the atmosphere, have adverse effects on chemistry and radiative forcing in the atmosphere. We studied the effect of biochar on denitrification and its gaseous intermediates in two acidic soils and tried to distinguish between the alkalizing effect of biochars on soil pH, and other, unknown effects of biochar on denitrification. Anoxic soil slurries were incubated with untreated biochars or biochars from which part of the alkalinity had been removed by water- and acid leaching. Soils amended with NaOH and uncharred cacao shell were used as controls. Biochar addition stimulated overall denitrification depending on biochar and soil type. This stimulation was not strictly coupled to pH increase, suggesting that biochar fueled respiration processes by contributing microbially available C. High resolution gas kinetics of NO, N2O and N2 showed that biochar amended soils induced denitrification enzymes earlier and with higher activity, resulting in less NO and N2O accumulation relative to N2 production. The extent to which biochar suppressed NO and N2O was dose-dependent and clearly related to the effective pH increase during incubation. Acid leaching of BC reduced or eliminated its ability to suppress N2O and NO net production. Comparison of BC with NaOH-amended soils showed that the reduction of N2O and NO net production was mainly an effect of increase in soil pH. Even though other factors supporting N2O reductase activity could not be excluded, our results indicate that soil pH increase might be an important driver behind the often-reported suppression of N2O emissions after biochar addition.

  14. Transient Accumulation of NO2- and N2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes.

    PubMed

    Hassan, Junaid; Qu, Zhi; Bergaust, Linda L; Bakken, Lars R

    2016-01-01

    Denitrifying bacteria accumulate [Formula: see text], NO, and N2O, the amounts depending on transcriptional regulation of core denitrification genes in response to O2-limiting conditions. The genes include nar, nir, nor and nosZ, encoding [Formula: see text]-, [Formula: see text]-, NO- and N2O reductase, respectively. We previously constructed a dynamic model to simulate growth and respiration in batch cultures of Paracoccus denitrificans. The observed denitrification kinetics were adequately simulated by assuming a stochastic initiation of nir-transcription in each cell with an extremely low probability (0.5% h-1), leading to product- and substrate-induced transcription of nir and nor, respectively, via NO. Thus, the model predicted cell diversification: after O2 depletion, only a small fraction was able to grow by reducing [Formula: see text]. Here we have extended the model to simulate batch cultivation with [Formula: see text], i.e., [Formula: see text], NO, N2O, and N2 kinetics, measured in a novel experiment including frequent measurements of [Formula: see text]. Pa. denitrificans reduced practically all [Formula: see text] to [Formula: see text] before initiating gas production. The [Formula: see text] production is adequately simulated by assuming stochastic nar-transcription, as that for nirS, but with a higher probability (0.035 h-1) and initiating at a higher O2 concentration. Our model assumes that all cells express nosZ, thus predicting that a majority of cells have only N2O-reductase (A), while a minority (B) has [Formula: see text]-, NO- and N2O-reductase. Population B has a higher cell-specific respiration rate than A because the latter can only use N2O produced by B. Thus, the ratio [Formula: see text] is low immediately after O2 depletion, but increases throughout the anoxic phase because B grows faster than A. As a result, the model predicts initially low but gradually increasing N2O concentration throughout the anoxic phase, as observed. The

  15. Transient Accumulation of NO2 - and N2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes

    PubMed Central

    Qu, Zhi; Bergaust, Linda L.

    2016-01-01

    Denitrifying bacteria accumulate NO2−, NO, and N2O, the amounts depending on transcriptional regulation of core denitrification genes in response to O2-limiting conditions. The genes include nar, nir, nor and nosZ, encoding NO3−-, NO2−-, NO- and N2O reductase, respectively. We previously constructed a dynamic model to simulate growth and respiration in batch cultures of Paracoccus denitrificans. The observed denitrification kinetics were adequately simulated by assuming a stochastic initiation of nir-transcription in each cell with an extremely low probability (0.5% h-1), leading to product- and substrate-induced transcription of nir and nor, respectively, via NO. Thus, the model predicted cell diversification: after O2 depletion, only a small fraction was able to grow by reducing NO2−. Here we have extended the model to simulate batch cultivation with NO3−, i.e., NO2−, NO, N2O, and N2 kinetics, measured in a novel experiment including frequent measurements of NO2−. Pa. denitrificans reduced practically all NO3− to NO2− before initiating gas production. The NO2− production is adequately simulated by assuming stochastic nar-transcription, as that for nirS, but with a higher probability (0.035 h-1) and initiating at a higher O2 concentration. Our model assumes that all cells express nosZ, thus predicting that a majority of cells have only N2O-reductase (A), while a minority (B) has NO2−-, NO- and N2O-reductase. Population B has a higher cell-specific respiration rate than A because the latter can only use N2O produced by B. Thus, the ratio BA is low immediately after O2 depletion, but increases throughout the anoxic phase because B grows faster than A. As a result, the model predicts initially low but gradually increasing N2O concentration throughout the anoxic phase, as observed. The modelled cell diversification neatly explains the observed denitrification kinetics and transient intermediate accumulations. The result has major implications for

  16. Aerobic Denitrifying Bacteria That Produce Low Levels of Nitrous Oxide

    PubMed Central

    Takaya, Naoki; Catalan-Sakairi, Maria Antonina B.; Sakaguchi, Yasushi; Kato, Isao; Zhou, Zhemin; Shoun, Hirofumi

    2003-01-01

    Most denitrifiers produce nitrous oxide (N2O) instead of dinitrogen (N2) under aerobic conditions. We isolated and characterized novel aerobic denitrifiers that produce low levels of N2O under aerobic conditions. We monitored the denitrification activities of two of the isolates, strains TR2 and K50, in batch and continuous cultures. Both strains reduced nitrate (NO3−) to N2 at rates of 0.9 and 0.03 μmol min−1 unit of optical density at 540 nm−1 at dissolved oxygen (O2) (DO) concentrations of 39 and 38 μmol liter−1, respectively. At the same DO level, the typical denitrifier Pseudomonas stutzeri and the previously described aerobic denitrifier Paracoccus denitrificans did not produce N2 but evolved more than 10-fold more N2O than strains TR2 and K50 evolved. The isolates denitrified NO3− with concomitant consumption of O2. These results indicated that strains TR2 and K50 are aerobic denitrifiers. These two isolates were taxonomically placed in the β subclass of the class Proteobacteria and were identified as P. stutzeri TR2 and Pseudomonas sp. strain K50. These strains should be useful for future investigations of the mechanisms of denitrifying bacteria that regulate N2O emission, the single-stage process for nitrogen removal, and microbial N2O emission into the ecosystem. PMID:12788710

  17. Modeling the effect of copper availability on bacterial denitrification

    PubMed Central

    Woolfenden, Hugh C; Gates, Andrew J; Bocking, Chris; Blyth, Mark G; Richardson, David J; Moulton, Vincent

    2013-01-01

    When denitrifying bacteria such as Paracoccus denitrificans respire anaerobically they convert nitrate to dinitrogen gas via a pathway which includes the potent greenhouse gas, nitrous oxide (N2O). The copper-dependent enzyme Nitrous Oxide reductase (Nos) catalyzes the reduction of N2O to dinitrogen. In low-copper conditions, recent experiments in chemostats have demonstrated that Nos efficiency decreases resulting in significant N2O emissions. For the first time, a chemostat-based mathematical model is developed that describes the anaerobic denitrification pathway based on Michaelis–Menten kinetics and published kinetic parameters. The model predicts steady-state enzyme levels from experimental data. For low copper concentrations, the predicted Nos level is significantly reduced, whereas the levels for the non copper-dependent reductases in the pathway remain relatively unaffected. The model provides time courses for the pathway metabolites that accurately reflect previously published experimental data. In the absence of experimental data purely predictive analyses can also be readily performed by calculating the relative Nos level directly from the copper concentration. Here, the model quantitatively estimates the increasing level of emitted N2O as the copper level decreases. PMID:23913488

  18. Physicochemical properties influencing denitrification rate and microbial activity in denitrification bioreactors

    NASA Astrophysics Data System (ADS)

    Schmidt, C. A.

    2012-12-01

    The use of N-based fertilizer will need to increase to meet future demands, yet existing applications have been implicated as the main source of coastal eutrophication and hypoxic zones. Producing sufficient crops to feed a growing planet will require efficient production in combination with sustainable treatment solutions. The long-term success of denitrification bioreactors to effectively remove nitrate (NO¬3), indicates this technology is a feasible treatment option. Assessing and quantifying the media properties that affect NO¬3 removal rate and microbial activity can improve predictions on bioreactor performance. It was hypothesized that denitrification rates and microbial biomass would be correlated with total C, NO¬3 concentration, metrics of organic matter quality, media surface area and laboratory measures of potential denitrification rate. NO¬3 removal rates and microbial biomass were evaluated in mesocosms filled with different wood treatments and the unique influence of these predictor variables was determined using a multiple linear regression analysis. NO3 reduction rates were independent of NO¬3 concentration indicating zero order reaction kinetics. Temperature was strongly correlated with denitrification rate (r2=0.87; Q10=4.7), indicating the variability of bioreactor performance in differing climates. Fiber quality, and media surface area were strong (R>0.50), unique predictors of rates and microbial biomass, although C:N ratio and potential denitrification rate did not predict actual denitrification rate or microbial biomass. Utilizing a stepwise multiple linear regression, indicates that the denitrification rate can be effectively (r2=0.56;p<0.0001) predicted if the groundwater temperature, neutral detergent fiber and surface area alone are quantified. These results will assist with the widespread implementation of denitrification bioreactors to achieve significant N load reductions in large watersheds. The nitrate reduction rate as a

  19. Denitrification in a Sand and Gravel Aquifer

    PubMed Central

    Smith, Richard L.; Duff, John H.

    1988-01-01

    Denitrification was assayed by the acetylene blockage technique in slurried core material obtained from a freshwater sand and gravel aquifer. The aquifer, which has been contaminated with treated sewage for more than 50 years, had a contaminant plume greater than 3.5-km long. Near the contaminant source, groundwater nitrate concentrations were greater than 1 mM, whereas 0.25 km downgradient the central portion of the contaminant plume was anoxic and contained no detectable nitrate. Samples were obtained along the longitudinal axis of the plume (0 to 0.25 km) at several depths from four sites. Denitrification was evident at in situ nitrate concentrations at all sites tested; rates ranged from 2.3 to 260 pmol of N2O produced (g of wet sediment)−1 h−1. Rates were highest nearest the contaminant source and decreased with increasing distance downgradient. Denitrification was the predominant nitrate-reducing activity; no evidence was found for nitrate reduction to ammonium at any site. Denitrifying activity was carbon limited and not nitrate limited, except when the ambient nitrate level was less than the detection limit, in which case, even when amended with high concentrations of glucose and nitrate, the capacity to denitrify on a short-term basis was lacking. These results demonstrate that denitrification can occur in groundwater systems and, thereby, serve as a mechanism for nitrate removal from groundwater. PMID:16347621

  20. Nitrite inhibition of denitrification by Pseudomonas fluorescens

    SciTech Connect

    Almeida, J.S.; Julio, S.M.; Reis, M.A.M. |

    1995-05-05

    Using a pure culture of Pseudomonas fluorescens as a model system nitrite inhibition of denitrification was studied. A mineral media with acetate and nitrate as sole electron donor and acceptor, respectively, was used. Results obtained in continuous stirred-tank reactors (CSTR) operated at pH values between 6.6 and 7.8 showed that growth inhibition depended only on the nitrite undissociated fraction concentration (nitrous acid). A mathematical model to describe this dependence is put forward. The maximum nitrous acid concentration compatible with cell growth and denitrification activity was found to be 66 {mu}g N/L. Denitrification activity was partially associated with growth, as described by the Luedeking-Piret equation. However, when the freshly inoculated reactor was operated discontinuously, nitrite accumulation caused growth uncoupling from denitrification activity. The authors suggest that these results can be interpreted considering that (a) nitrous acid acts as a proton uncoupler; and (b) cultures continuously exposed to nitrous acid prevent the uncoupling effect but not the growth inhibition. Examination of the growth dependence on nitrite concentration at pH 7.0 showed that adapted cultures (growth on CSTR) are less sensitive to nitrous acid inhibition than the ones cultivated in batch.

  1. Modeling nitrate removal in a denitrification bed

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Denitrification beds are being promoted to reduce nitrate concentrations in agricultural drainage water to alleviate the adverse environmental effects associated with nitrate pollution in surface water. In this system, water flows through a trench filled with a carbon media where nitrate is transfor...

  2. In-situ denitrification of ponds

    SciTech Connect

    Napier, J.M.

    1984-11-01

    An in-situ biological denitrification process successfully reduced nitrate ion concentrations in four 2.5 million gallon open-air holding ponds from nearly 40,000 mg/L to less than 50 mg/L. Concurrently, heavy metal concentrations were reduced to levels acceptable for discharge. 3 figures.

  3. Biological denitrification in microbial fuel cells.

    PubMed

    Clauwaert, Peter; Rabaey, Korneel; Aelterman, Peter; de Schamphelaire, Liesje; Pham, The Hai; Boeckx, Pascal; Boon, Nico; Verstraete, Willy

    2007-05-01

    Microbial fuel cells (MFCs) that remove carbon as well as nitrogen compounds out of wastewater are of special interest for practice. We developed a MFC in which microorganisms in the cathode performed a complete denitrification by using electrons supplied by microorganisms oxidizing acetate in the anode. The MFC with a cation exchange membrane was designed as a tubular reactor with an internal cathode and was able to remove up to 0.146 kg NO(3-)-N m(-3) net cathodic compartment (NCC) d(-1) (0.080 kg NO(3-)-N m(-3) total cathodic compartment d(-1) (TCC)) at a current of 58 A m(-3) NCC (32 A m(-3) TCC) and a cell voltage of 0.075 V. The highest power output in the denitrification system was 8 W m(-3) NCC (4 W m(-3) TCC) with a cell voltage of 0.214 V and a current of 35 A m(-3) NCC. The denitrification rate and the power production was limited bythe cathodic microorganisms, which only denitrified significantly at a cathodic electrode potential below 0 V versus standard hydrogen electrode (SHE). This is, to our knowledge, the first study in which a MFC has both a biological anode and cathode performing simultaneous removal of an organic substrate, power production, and complete denitrification without relying on H2-formation or external added power.

  4. Impact of partial nitritation degree and C/N ratio on simultaneous Sludge Fermentation, Denitrification and Anammox process.

    PubMed

    Wang, Bo; Peng, Yongzhen; Guo, Yuanyuan; Yuan, Yue; Zhao, Mengyue; Wang, Shuying

    2016-11-01

    This study presents a novel process (i.e. PN/SFDA) to remove nitrogen from low C/N domestic wastewater. The process mainly involves two reactors, a pre-Sequencing Batch Reactor for partial nitritation (termed as PN-SBR) and an anoxic reactor for integrated Denitrification and Anammox with carbon sources produced from Sludge Fermentation (termed as SFDA). During long-term Runs, NO2(-)/NH4(+) ratio (i.e. NO2(-)-N/NH4(+)-N calculated by mole) in the PN-SBR effluent was gradually increased from 0.2 to 37 by extending aerobic duration, meaning that partial nitritation turning to full nitritation could be achieved. Impact of partial nitritation degree on SFDA process was investigated and the result showed that, NO2(-)/NH4(+) ratios between 2 and 10 were appropriate for the co-existence of denitrification and anammox together in the SFDA reactor, and denitrification instead of anammox contributed greater for nitrogen removal. Further batch tests indicated that anammox collaborated well with denitrification at low C/N (1.0 in this study). PMID:27513647

  5. Experiments in In-Situ Aquifer Denitrification

    NASA Astrophysics Data System (ADS)

    Khan, I. A.; Spalding, R. F.

    2001-05-01

    During the past five years, denitrification experiments have been conducted in sand and gravel aquifers. Successive experiments have provided data showing both pitfalls and successes in designing sustainable injection/extraction systems for ground water denitrification. Testing has evolved from simple one-well to eight-well injection systems, commonly referred as Daisy systems. Aquifer profiles of the performance of denitrification were determined by multilevel sampling in two-foot intervals within the denitrification zone. Continuous and pulsed injection of organic carbon were tested, and in both cases the 40 mg NO3-N L-1 was reduced to below the detection limit (< 0.1 mg NO3-N L-1). Under continuous injection, accumulation of bacterial material in the vicinity of the injection well resulted in injection well clogging within 10 days. Using a dipole tool developed in the Water Sciences Laboratory, periodic cleaning was accomplished by circulating a cleaning solution (5% H2O2 and 0.02% NaOCl) in the injection well and adjacent ground water. Pulse injections, in which the carbon is separated from the nitrate, successfully alleviated the proliferation of bacterial accumulations without adversely affecting the performance of the denitrification process. Given that ethanol favored enhanced bacterial growth and increased the potential for biofouling of the equipment, acetate became the preferred carbon amendment. About 45% of the nitrate was denitrified before interception in the production well during a three-month pulsed injection experiment using the full eight-well Daisy design. Draw down of nondenitrified water from the upper two-thirds of the aquifer supplied nitrate to the production well and thus limited system performance.

  6. Denitrification in San Francisco Bay intertidal sediments

    USGS Publications Warehouse

    Oremland, Ronald S.; Umberger, Cindy; Culbertson, Charles W.; Smith, Richard L.

    1984-01-01

    The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO3− + NO2− concentrations (≤26 μM) were below the apparent Km (50 μM) for nitrate. During the rainy season, when ambient NO3− + NO2− concentrations were higher (37 to 89 μM), an accurate estimate of the Km could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N2O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N2O in the presence of C2H2 was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cell suspensions of a marine pseudomonad confirmed that this N2O loss was caused by incomplete blockage of N2O reductase by C2H2 at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 μmol of N2 m−2 h−1 (for undisturbed sediments) to 17 to 280 μmol of N2 m−2 h−1 (for shaken sediment slurries).

  7. Dissolved gas and isotopic tracers of denitrification

    SciTech Connect

    Singleton, M J; Moran, J E; Esser, B K; McNab, W W; Carle, S F; Cey, B D

    2008-02-28

    We present results from field studies in California (USA) where tritium-helium age dating is used in conjunction with major gases (N{sub 2}, O{sub 2}, CH{sub 4}, CO{sub 2}), noble gases (He, Ne, Ar, Kr, Xe), and stable isotopes ({sup 15}N/{sup 14}N, {sup 18}O/{sup 16}O) in order to document nitrate loading and denitrification associated with confined animal agricultural operations and septic systems. Preliminary results show that in-field extraction of the full suite of dissolved gases will be possible using a new Gas Extraction System under development to augment the current Noble Gas Mass Spectrometry and Membrane Inlet Mass Spectrometry techniques. Ascribing observed groundwater nitrate levels to specific current and past land use practices is often complicated by uncertainty in groundwater age and the degree and locus of dentrification. Groundwater age dating at dairy field sites using the {sup 3}H-{sup 3}He method indicates that the highest nitrate concentrations (150-260 mg/L-NO3) occur in waters with apparent ages of <5 yrs, whereas older waters contain excess N{sub 2} from saturated zone denitrification [1]. At a residential septic system site in Livermore, CA, waters with young apparent ages (<1 yr) proximal to leach line drainage have lower nitrate concentrations and elevated nitrate {delta}{sup 15}N and {delta}{sup 18}O values consistent with denitrification, but little evidence for excess N{sub 2}, indicating that denitrification is occurring in the unsaturated zone. Degassing of groundwater can complicate efforts to calculate travel times [2] and to quantify denitrification. Degassed groundwater underlying dairy operations is formed by two distinct mechanisms: (1) recharge of manure lagoon water affected by biogenic gas ebullition [3] and (2) saturated zone denitrification producing N{sub 2} gas above solubility in groundwater. Gas loss due to both mechanisms is evident in the concentrations of noble gases and major gases in dairy groundwater samples.

  8. Impact of Aeration and Heme-Activated Respiration on Lactococcus lactis Gene Expression: Identification of a Heme-Responsive Operon▿ †

    PubMed Central

    Pedersen, Martin Bastian; Garrigues, Christel; Tuphile, Karine; Brun, Célia; Vido, Karin; Bennedsen, Mads; Møllgaard, Henrik; Gaudu, Philippe; Gruss, Alexandra

    2008-01-01

    Lactococcus lactis is a widely used food bacterium mainly characterized for its fermentation metabolism. However, this species undergoes a metabolic shift to respiration when heme is added to an aerobic medium. Respiration results in markedly improved biomass and survival compared to fermentation. Whole-genome microarrays were used to assess changes in L. lactis expression under aerobic and respiratory conditions compared to static growth, i.e., nonaerated. We observed the following. (i) Stress response genes were affected mainly by aerobic fermentation. This result underscores the differences between aerobic fermentation and respiration environments and confirms that respiration growth alleviates oxidative stress. (ii) Functions essential for respiratory metabolism, e.g., genes encoding cytochrome bd oxidase, menaquinone biosynthesis, and heme uptake, are similarly expressed under the three conditions. This indicates that cells are prepared for respiration once O2 and heme become available. (iii) Expression of only 11 genes distinguishes respiration from both aerobic and static fermentation cultures. Among them, the genes comprising the putative ygfCBA operon are strongly induced by heme regardless of respiration, thus identifying the first heme-responsive operon in lactococci. We give experimental evidence that the ygfCBA genes are involved in heme homeostasis. PMID:18487342

  9. Autoxidation and acetylene-accelerated oxidation of NO in a 2-phase system; implications for the expression of denitrification in ex situ experiments

    NASA Astrophysics Data System (ADS)

    Nadeem, Shahid; Dörsch, Peter; Bakken, Lars

    2013-04-01

    Denitrification allows microorganisms to sustain respiration under anoxic conditions. The typical niche for denitrification is an environment with fluctuating oxygen concentrations such as soils and borders between anoxic and oxic zones of biofilms and sediments. In such environments, the organisms need adequate regulation of denitrification in response to changing oxygen availability to tackle both oxic and anoxic spells. The regulation of denitrification in soils has environmental implications, since it affects the proportions of N2, N2O and NO emitted to the atmosphere. The expression of denitrification enzymes is regulated by a complex regulatory network involving one or several positive feedback loops via the intermediate nitrogen oxides. Nitric oxide (NO) is known to induce denitrification in model organisms, but the quantitative effect of NO and its concentration dependency has not been assessed for denitrification in soils. NO is chemically unstable in the presence of oxygen due to autoxidation, and the oxidation of NO is accelerated by acetylene (C2H2) which is commonly used as an inhibitor of N2O reductase in denitrification studies. As a first step to a better understanding of NO's role in soil denitrification, we investigated NO oxidation kinetics for a closed "two phase" system (i.e. liquid phase + headspace) typically used for denitrification experiments with soil slurries, with and without acetylene present. Models were developed to adequately predict autoxidation and acetylene-accelerated oxidation. The minimum oxygen concentration in the headspace ([O2]min, mL L-1) for acetylene-accelerated NO oxidation was found to increase linearly with the NO concentration ([NO], mL L-1); [O2]min= 0.192 + [NO]*0.1 (r2=0.978). The models for NO oxidation were then used to assess NO-oxidation rates in denitrification experiments with batches of bacterial cells extracted from soil. The batches were exposed to low initial oxygen concentrations in gas tight serum

  10. A novel stoichiometries methodology to quantify functional microorganisms in simultaneous (partial) nitrification-endogenous denitrification and phosphorus removal (SNEDPR).

    PubMed

    Wang, Xiaoxia; Wang, Shuying; Zhao, Ji; Dai, Xian; Li, Baikun; Peng, Yongzhen

    2016-05-15

    Although efficient removal of carbon (C), nitrogen (N) and phosphorous (P) from wastewater with low C/N ratio was achieved in anaerobic/aerobic simultaneous nitrification-endogenous denitrification and phosphorus removal (SNEDPR) systems, the removal pathways and metabolic transformations in this complex system are unclear. This work targeted at developing the stoichiometric models for denitrifying glycogen organisms (DGAOs) via nitrite and nitrate (DGAONi and DGAONa), and demonstrating a novel methodology to quantify diverse functional microorganisms (e.g. ammonia and nitrite oxidizing bacteria, aerobic phosphorus accumulating organisms (APAOs), denitrifying PAOs (DPAOs) and aerobic GAOs (AGAOs)) for the removal of C, N and P. The results showed that the anaerobic intracellular carbon storage (CODintra) was mainly accomplished by GAOs, and PAOs were only responsible for about 40% of CODintra through a stable P release. At the aerobic stage, 84.9% of P was removed by APAOs with 15.1% left by DPAOs, while 64.6% of N was removed by DGAOs (45.8% by DGAONi and 18.8% by DGAONa) with 18.1% by DPAOs and 17.3% by bacterial growth. High proportion of N removal via nitrite (partial nitrification-endogenous denitrification) (71%) saved 7.3% aeration and 38% intracellular carbon demand. However, AGAOs still activated well at the aerobic intercellular carbon consumption, which limited the further improvement of N removal efficiency. By elucidating the nutrient removal pathways among diverse functional microorganisms, the methodology developed in this study could accelerate the nutrient removal in the SNEDPR process. PMID:27016642

  11. Toxic and inhibitory effects of trichloroethylene aerobic co-metabolism on phenol-grown aerobic granules.

    PubMed

    Zhang, Yi; Tay, JooHwa

    2015-04-01

    Aerobic granule, a form of microbial aggregate, exhibits good potential in degrading toxic and recalcitrant substances. In this study, the inhibitory and toxic effects of trichloroethylene (TCE), a model compound for aerobic co-metabolism, on phenol-grown aerobic granules were systematically studied, using respiratory activities after exposure to TCE as indicators. High TCE concentration did not exert positive or negative effects on the subsequent endogenous respiration rate or phenol dependent specific oxygen utilization rate (SOUR), indicating the absence of solvent stress and induction effect on phenol-hydroxylase. Phenol-grown aerobic granules exhibited a unique response to TCE transformation product toxicity, that small amount of TCE transformation enhanced the subsequent phenol SOUR. Granules that had transformed between 1.3 and 3.7 mg TCE gSS(-1) showed at most 53% increase in the subsequent phenol SOUR, and only when the transformation exceeded 6.6 mg TCE gSS(-1) did the SOUR dropped below that of the control. This enhancing effect was found to sustain throughout several phenol dosages, and TCE transformation below the toxicity threshold also lessened the granules' sensitivity to higher phenol concentration. The unique toxic effect was possibly caused by the granule's compact structure as a protection barrier against the diffusive transformation product(s) of TCE co-metabolism.

  12. Impact of Aquifer Heterogeneities on Autotrophic Denitrification.

    NASA Astrophysics Data System (ADS)

    McCarthy, A.; Roques, C.; Selker, J. S.; Istok, J. D.; Pett-Ridge, J. C.

    2015-12-01

    Nitrate contamination in groundwater is a big challenge that will need to be addressed by hydrogeologists throughout the world. With a drinking water standard of 10mg/L of NO3-, innovative techniques will need to be pursued to ensure a decrease in drinking water nitrate concentration. At the pumping site scale, the influence and relationship between heterogeneous flow, mixing, and reactivity is not well understood. The purpose of this project is to incorporate both physical and chemical modeling techniques to better understand the effect of aquifer heterogeneities on autotrophic denitrification. We will investigate the link between heterogeneous hydraulic properties, transport, and the rate of autotrophic denitrification. Data collected in previous studies in laboratory experiments and pumping site scale experiments will be used to validate the models. The ultimate objective of this project is to develop a model in which such coupled processes are better understood resulting in best management practices of groundwater.

  13. Denitrification mechanisms in the polar stratospheres

    NASA Technical Reports Server (NTRS)

    Toon, Owen B.; Turco, R. P.; Hamill, P.

    1990-01-01

    Microphysical simulations suggest that the time required for nitric acid particles to sediment from the stratosphere is comparable to the time required for falling ice particles to incorporate nitric acid vapor from the vapor phase. Since nitric acid particles form earlier in the winter than ice particles, these simulations favor denitrification being a separate process from dehydration, with denitrification being due to nitric acid particles and dehydration due to ice particles. In the simulations, the column abundance of nitric acid is only depleted if temperatures low enough for nitric acid particles to exist extend to the altitude above which the column is measured. Such low temperatures are infrequent in the Arctic lower stratosphere, which may be the main reason that the Arctic stratospheric column shows little loss of nitric acid during winter, while the colder Antarctic stratospheric column shows a substantial loss of nitric acid.

  14. Relative Magnitude and Controls of in Situ N2 and N2O Fluxes due to Denitrification in Natural and Seminatural Terrestrial Ecosystems Using (15)N Tracers.

    PubMed

    Sgouridis, Fotis; Ullah, Sami

    2015-12-15

    Denitrification is the most uncertain component of the nitrogen (N) cycle, hampering our ability to assess its contribution to reactive N (Nr) removal. This uncertainty emanates from the difficulty in measuring in situ soil N2 production and from the high spatiotemporal variability of the process itself. In situ denitrification was measured monthly between April 2013 and October 2014 in natural (organic and forest) and seminatural ecosystems (semi-improved and improved grasslands) in two UK catchments. Using the (15)N-gas flux method with low additions of (15)NO3(-) tracer, a minimum detectable flux rate of 4 μg N m(-2) h(-1) and 0.2 ng N m(-2) h(-1) for N2 and N2O, respectively, was achieved. Denitrification rates were lower in organic and forest (8 and 10 kg N ha(-1) y(-1), respectively) than in semi-improved and improved grassland soils (13 and 25 kg N ha(-1) y(-1), respectively). The ratio of N2O/N2 + N2O was low and ranged from <1% to 7% across the sites. Variation in denitrification was driven by differences in soil respiration, nitrate, C:N ratio, bulk density, moisture, and pH across the sites. Overall, the contribution of denitrification to Nr removal in natural ecosystems was ~50% of the annual atmospheric Nr deposition, making these ecosystems vulnerable to chronic N saturation.

  15. Aerobic Conditioning Class.

    ERIC Educational Resources Information Center

    Johnson, Neil R.

    1980-01-01

    An aerobic exercise class that focuses on the conditioning of the cardiovascular and muscular systems is presented. Students complete data cards on heart rate, pulse, and exercises to be completed during the forty minute course. (CJ)

  16. Saturated Zone Denitrification at California Dairies

    SciTech Connect

    Singleton, M J; Esser, B K; Moran, J E; McNab, W W; Beller, H R

    2006-02-27

    Denitrification can effectively mitigate the problem of high nitrate concentrations in groundwater under dairy operations by reducing nitrate to N{sub 2} gas, at sites where biogeochemical conditions are favorable. We present results from field studies at central California dairies that document the occurrence of saturated-zone denitrification in shallow groundwater using biomolecular indicators, stable isotope compositions of nitrate, and measurements of dissolved excess N{sub 2} gas. Excess N{sub 2} concentrations provide a measure of the extent to which nitrate in groundwater has been partially or completely denitrified. Abundant excess N{sub 2} and young {sup 3}H/{sup 3}He apparent groundwater ages indicate high denitrification rates near manure lagoons where multiple lines of evidence indicate seepage of lagoon water into the groundwater system. Natural tracers of lagoon water include high chloride and dissolved organic carbon concentrations, distinctive trace organic compounds, and high groundwater {delta}{sup 18}O values (relative to other recharge sources). Proximal to the lagoons, NH{sub 4}{sup +} may be present in groundwater, but is strongly adsorbed on to sediment particles. Bubble formation in the lagoons causes the exsolution of other gases (N{sub 2}, Ar, Ne, He, etc.), which partition into the gas phase and strip the lagoon water of its dissolved gas load, providing a unique tracer of lagoon seepage in groundwater.

  17. Natural denitrification in drying process of dew

    SciTech Connect

    Takenaka, Norimichi; Suzue, Takahiko; Ohira, Kingo; Bandow, Hiroshi; Maeda, Yasuki; Morikawa, Tazuko

    1999-05-01

    This report is the first observation of natural chemical denitrification in the drying process of dew. Nitrogen compounds released in the atmosphere are considered to be subjected to oxidation to form nitric acid by the chemical process so far. The results here show that nitrous acid is reduced to N{sub 2} by drying of dew. Dew was collected at Osaka Prefecture University in Sakai City, Japan from 1996 to 1997. Concentrations of ammonium and nitrite ions in dew were very high related to those in rain, and pHs of dew were relatively high, pH ca. 6.5. The authors found that when dew was dried, most nitrite and ammonium ions included in dew were decomposed. It is well-known that concentrated ammonium nitrite aqueous solution is unstable and decomposes to N{sub 2} and H{sub 2}O. During the drying process of dew, nitrite and ammonium would be concentrated and react to form N{sub 2}, and as a result, nitrite and ammonia in the dried dew are lost, that is, natural denitrification occurs in the drying process of dew. The authors report here results of the natural denitrification.

  18. In situ denitrification in controlled landfill systems

    SciTech Connect

    Onay, T.T.; Pohland, F.G.

    1996-11-01

    The characteristics of leachate from landfill disposal sites vary according to the operational stage of the landfill. Leachates from old landfills are often rich in ammonia nitrogen due to the hydrolysis and fermentation of nitrogenous fractions of biodegradable refuse substrates. The relative concentration accumulating as stabilization progresses is also influenced by washout as leachate is collected and removed for external treatment. However, in landfills operated as bioreactors with leachate containment, collection and in situ recirculation to accelerate decomposition of readily available organic fractions of the refuse, leachate ammonia nitrogen concentrations may accumulate to much higher levels. High leachate ammonia nitrogen concentrations in landfill leachate have been reported, resulting in separate treatment challenges if direct discharge to either land or receiving waters is practiced. External treatment options for landfill leachate may involve complex physical-chemical and/or biological processes for removal of both high-strength organic and inorganic fractions, including nitrogen. Such separate leachate treatment systems are often costly and difficult to control on a continuum. Therefore, this study focused on the investigation of landfill ammonia nitrogen generation patterns, and the potential for its in situ attenuation and conversion in landfills constructed to permit sequential nitrification and denitrification using leachate recirculation. Accordingly, the landfill is constructed and operated as a controlled bioreactor system, with opportunity to convert ammonia to nitrate by nitrification and nitrate to nitrogen gas by denitrification. The results presented in this paper focus on in situ landfill denitrification of nitrified ammonia.

  19. Direct contribution of clams (Ruditapes philippinarum) to benthic fluxes, nitrification, denitrification and nitrous oxide emission in a farmed sediment

    NASA Astrophysics Data System (ADS)

    Welsh, David T.; Nizzoli, Daniele; Fano, Elisa A.; Viaroli, Pierluigi

    2015-03-01

    The influence of the manila clam (Ruditapes philippinarum) on N-cycle processes, and oxygen and nutrient fluxes in a farmed sediment was investigated using a multiple core incubation approach and parallel incubations of individual clams. Clam population/biomass density varied ∼8-fold between cores and all sediment-water column solute (O2. N2, N2O, NH4+, NOX and DIN) fluxes and benthic process (N-regeneration, nitrification and denitrification) rates were strongly and significantly correlated with clam density/biomass. Isolated clams exhibited high rates of respiration, N-excretion, nitrification and denitrification of 2050 ± 70, 395 ± 49, 201 ± 42 and 235 ± 40 nmol individual-1 h-1, respectively. The direct contribution of the clams and their associated microbiota to benthic processes was estimated by multiplying the per individual rates by the number of clams in each incubated core. The clams on average directly accounted for 64-133% of total rates of sediment oxygen demand, N-regeneration, nitrification and denitrification, indicating that they regulated processes primarily through their own metabolic activity and that of bacteria that colonise them. Clams and the farmed sediments were significant sources of the greenhouse gas N2O, but this was primarily due to their high nitrification and denitrification rates, rather than high specific N2O yields, as N2O emissions represented <1% of total N2O + N2 production. The clam-farmed sediments had a high denitrification efficiency of 67 ± 10%, but this ecosystem service came at the environmental cost of increased N-regeneration and N2O emission rates. The measured N2O emissions indicate that bivalve aquaculture may be a significant source of N2O. It is therefore recommended that N2O emissions should be included in the impact assessments of current and future bivalve-farming projects.

  20. Carbon limitation of denitrification rates in an anaerobic groundwater system

    USGS Publications Warehouse

    Bradley, P.M.; Fernandez, M.; Chapelle, F.H.

    1992-01-01

    Rates of potential denitrification were determined for anaerobic aquifer sediments collected at a site where groundwater NO3 concentrations ranged from 0.7 ??M to 8.6 mM. A significant relation (p = 0.046) was observed between denitrification rates and the in situ concentration of NO3, but NO3 concentration only accounted for approximately 34% (r2) of the variation in activity. The highly significant relation (p < 0.001; r2 = 0.80) between potential denitrification and sediment total organic content and the enhanced activity of sediments amended with glucose indicated that denitrification rates in this aquifer system were carbon limited. No significant relation was observed between denitrification and the in situ groundwater pH, but short-term variations in pH influenced both the magnitude and the end products of denitrification. ?? 1992 American Chemical Society.

  1. Molecular characterization of bacterial respiration of minerals. Final technical report, March 1, 1985--February 29, 1996

    SciTech Connect

    Blake, R. II

    1996-08-01

    The goals of this project were to continue the identification, separation, and characterization of the cellular components necessary for aerobic respiration on iron, and to initiate an investigation of the molecular principles whereby these bacteria recognize and adhere to their insoluble inorganic substrates. Progress is described.

  2. Cellular hallmarks reveal restricted aerobic metabolism at thermal limits

    PubMed Central

    Neves, Aitana; Busso, Coralie; Gönczy, Pierre

    2015-01-01

    All organisms live within a given thermal range, but little is known about the mechanisms setting the limits of this range. We uncovered cellular features exhibiting signature changes at thermal limits in Caenorhabditis elegans embryos. These included changes in embryo size and shape, which were also observed in Caenorhabditis briggsae, indicating evolutionary conservation. We hypothesized that such changes could reflect restricted aerobic capacity at thermal limits. Accordingly, we uncovered that relative respiration in C. elegans embryos decreases at the thermal limits as compared to within the thermal range. Furthermore, by compromising components of the respiratory chain, we demonstrated that the reliance on aerobic metabolism is reduced at thermal limits. Moreover, embryos thus compromised exhibited signature changes in size and shape already within the thermal range. We conclude that restricted aerobic metabolism at the thermal limits contributes to setting the thermal range in a metazoan organism. DOI: http://dx.doi.org/10.7554/eLife.04810.001 PMID:25929283

  3. Cellular hallmarks reveal restricted aerobic metabolism at thermal limits.

    PubMed

    Neves, Aitana; Busso, Coralie; Gönczy, Pierre

    2015-05-01

    All organisms live within a given thermal range, but little is known about the mechanisms setting the limits of this range. We uncovered cellular features exhibiting signature changes at thermal limits in Caenorhabditis elegans embryos. These included changes in embryo size and shape, which were also observed in Caenorhabditis briggsae, indicating evolutionary conservation. We hypothesized that such changes could reflect restricted aerobic capacity at thermal limits. Accordingly, we uncovered that relative respiration in C. elegans embryos decreases at the thermal limits as compared to within the thermal range. Furthermore, by compromising components of the respiratory chain, we demonstrated that the reliance on aerobic metabolism is reduced at thermal limits. Moreover, embryos thus compromised exhibited signature changes in size and shape already within the thermal range. We conclude that restricted aerobic metabolism at the thermal limits contributes to setting the thermal range in a metazoan organism.

  4. An experimental investigation of nitrogen gas produced during denitrification

    SciTech Connect

    Istok, J. D.; Park, Melora M.; Peacock, A. D.; Oostrom, Mart; Wietsma, Thomas W.

    2007-07-01

    In Situ denitrification relies on the activity of indegenous or introduced denitrifying microorganisms to reduce nitrate to N2 gas. In this study, we investigated the fate of N2 gas produced during denitrification in an intermediate-scale flow cell containing packed sediments. Denitrification was stimulated by a series of nitrate and ethanol additions. Results show limited reduction of hydraulic conductivity in the aquifer material.

  5. Quantifying Denitrification and Its Effect on Ozone Recovery

    NASA Technical Reports Server (NTRS)

    Tabazadeh, A.; Santee, M. L.; Danilin, M. Y.; Pumphrey, H. C.; Newman, P. A.; Hamill, P. J.; Mergenthaler, J. L.; Gore, Warren J. (Technical Monitor)

    2000-01-01

    Upper Atmosphere Research Satellite observations indicate that extensive denitrification, without significant dehydration, currently occurs only in the Antarctic during mid to late June. The fact that denitrification occurs in a relatively warm month in the Antarctic raises concern about the likelihood of its occurrence, and associated effects on ozone recovery, in a future colder and possibly more humid Arctic lower stratosphere. Polar stratospheric cloud lifetimes required for Arctic denitrification to occur in the future are presented and contrasted against the current Antarctic cloud lifetimes. Model calculations show widespread severe denitrification could enhance future Arctic ozone loss by up to 30%.

  6. Respiration of Escherichia coli in the mouse intestine.

    PubMed

    Jones, Shari A; Chowdhury, Fatema Z; Fabich, Andrew J; Anderson, April; Schreiner, Darrel M; House, Anetra L; Autieri, Steven M; Leatham, Mary P; Lins, Jeremy J; Jorgensen, Mathias; Cohen, Paul S; Conway, Tyrrell

    2007-10-01

    Mammals are aerobes that harbor an intestinal ecosystem dominated by large numbers of anaerobic microorganisms. However, the role of oxygen in the intestinal ecosystem is largely unexplored. We used systematic mutational analysis to determine the role of respiratory metabolism in the streptomycin-treated mouse model of intestinal colonization. Here we provide evidence that aerobic respiration is required for commensal and pathogenic Escherichia coli to colonize mice. Our results showed that mutants lacking ATP synthase, which is required for all respiratory energy-conserving metabolism, were eliminated by competition with respiratory-competent wild-type strains. Mutants lacking the high-affinity cytochrome bd oxidase, which is used when oxygen tensions are low, also failed to colonize. However, the low-affinity cytochrome bo(3) oxidase, which is used when oxygen tension is high, was found not to be necessary for colonization. Mutants lacking either nitrate reductase or fumarate reductase also had major colonization defects. The results showed that the entire E. coli population was dependent on both microaerobic and anaerobic respiration, consistent with the hypothesis that the E. coli niche is alternately microaerobic and anaerobic, rather than static. The results indicate that success of the facultative anaerobes in the intestine depends on their respiratory flexibility. Despite competition for relatively scarce carbon sources, the energy efficiency provided by respiration may contribute to the widespread distribution (i.e., success) of E. coli strains as commensal inhabitants of the mammalian intestine. PMID:17698572

  7. Denitrification in the water column of the central Baltic Sea

    NASA Astrophysics Data System (ADS)

    Dalsgaard, Tage; De Brabandere, Loreto; Hall, Per O. J.

    2013-04-01

    Removal of fixed nitrogen in the water column of the eastern Gotland Basin, central Baltic Sea, was studied during two cruises in September 2008 and August 2010. The water column was stratified with anoxic sulfidic bottom water meeting oxic nitrate containing water at the oxic-anoxic interface. Anammox was never detected whereas denitrification was found in all incubations from anoxic depths and occurred immediately below the oxic-anoxic interface. Sulfide (H2S + HS- + S2-) was in most cases the only electron donor for denitrification but, in contrast to previous findings, denitrification was in some situations driven by organic matter alone. Nitrous oxide (N2O) became an increasingly important product of denitrification with increasing sulfide concentration and was >80% of the total N gas formation at 10 μM sulfide. The potential rates of denitrification measured in incubations at elevated NO3- or sulfide concentrations were converted to in situ rates using the measured water column concentrations of NO3- and sulfide and the actual measured relations between NO3- and sulfide concentrations and denitrification rates. In situ denitrification ranged from 0.24 to 15.9 nM N2 h-1. Assuming that these rates were valid throughout the anoxic NO3- containing zone, depth integrated in situ denitrification rates of 0.06-2.11 mmol N m-2 d-1 were estimated. The thickness of this zone was generally 3-6 m, which is probably what can be maintained through regular turbulent mixing induced by internal waves at the oxic-anoxic interface. However, layers of up to 55 m thickness with low O2 water (<10 μM) were observed which was probably the result of larger scale mixing. In such a layer nitrification may produce NO3- and once the O2 has been depleted denitrification will follow resulting in enormous rates per unit area. Even with an active denitrification layer of 3-6 m thickness the pelagic denitrification per unit area clearly exceeded sediment denitrification rates elsewhere in

  8. CROSS-STREAM COMPARISON OF SUBSTRATE-SPECIFIC DENITRIFICATION POTENTIAL

    SciTech Connect

    Findlay, Stuart; Mulholland, Patrick J; Hamilton, Stephen; Tank, Jennifer; Bernot, Melody; Burgin, Amy; Crenshaw, Chelsea; Grimm, Nancy; McDowell, William; Potter, Jody; Sobota, Daniel

    2011-01-01

    Headwater streams have a demonstrated ability to denitrify a portion of their nitrate (NO(3) (-)) load but there has not been an extensive consideration of where in a stream this process is occurring and how various habitats contribute to total denitrification capability. As part of the Lotic Intersite Nitrogen Experiment II (LINX II) we measured denitrification potential in 65 streams spanning eight regions of the US and draining three land-use types. In each stream, potential denitrification rates were measured in common substrate types found across many streams as well as locations unique to particular streams. Overall, habitats from streams draining urban and agricultural land-uses showed higher potential rates of denitrification than reference streams draining native vegetation. This difference among streams was probably driven by higher ambient nitrate concentrations found in urban or agricultural streams. Within streams, sandy habitats and accumulations of fine benthic organic matter contributed more than half of the total denitrification capacity (mg N removed m(-2) h(-1)). A particular rate of potential denitrification per unit area could be achieved either by high activity per unit organic matter or lower activities associated with larger standing stocks of organic matter. We found that both small patches with high rates (hot spots) or more widespread but less active areas (cool matrix) contributed significantly to whole stream denitrification capacity. Denitrification estimated from scaled-up denitrification enzyme assay (DEA) potentials were not always dramatically higher than in situ rates of denitrification measured as (15)N gas generation following 24-h (15)N-NO(3) tracer additions. In general, headwater streams draining varying land-use types have significant potential to remove nitrate via denitrification and some appear to be functioning near their maximal capacity.

  9. Denitrification Genes Regulate Brucella Virulence in Mice

    PubMed Central

    Baek, Seung-Hun; Rajashekara, Gireesh; Splitter, Gary A.; Shapleigh, James P.

    2004-01-01

    Brucella is the causative agent of the zoonotic disease brucellosis, which is endemic in many parts of the world. Genome sequencing of B. suis and B. melitensis revealed that both are complete denitrifiers. To learn more about the role of denitrification in these animal pathogens, a study of the role of denitrification in the closely related B. neotomae was undertaken. In contrast to B. suis and B. melitensis, it was found that B. neotomae is a partial denitrifier that can reduce nitrate to nitrite but no further. Examination of the B. neotomae genome showed that a deletion in the denitrification gene cluster resulted in complete loss of nirV and the partial deletion of nirK and nnrA. Even though the nor operon is intact, a norC-lacZ promoter fusion was not expressed in B. neotomae. However, the norC-lacZ fusion was expressed in the related denitrifier Agrobacterium tumefaciens, suggesting that the lack of expression in B. neotomae is due to inactivation of NnrA. A narK-lacZ promoter fusion was found to exhibit nitrate-dependent expression consistent with the partial denitrifier phenotype. Complementation of the deleted region in B. neotomae by using nirK, nirV, and nnrA from B. melitensis restored the ability of B. neotomae to reduce nitrite. There was a significant difference in the death of IRF-1−/− mice when infected with B. neotomae containing nirK, nirV, and nnrA and those infected with wild-type B. neotomae. The wild-type strain killed all the infected mice, whereas most of the mice infected with B. neotomae containing nirK, nirV, and nnrA survived. PMID:15342571

  10. Siderophores are not involved in Fe(III) solubilization during anaerobic Fe(III) respiration by Shewanella oneidensis MR-1.

    PubMed

    Fennessey, Christine M; Jones, Morris E; Taillefert, Martial; DiChristina, Thomas J

    2010-04-01

    Shewanella oneidensis MR-1 respires a wide range of anaerobic electron acceptors, including sparingly soluble Fe(III) oxides. In the present study, S. oneidensis was found to produce Fe(III)-solubilizing organic ligands during anaerobic Fe(III) oxide respiration, a respiratory strategy postulated to destabilize Fe(III) and produce more readily reducible soluble organic Fe(III). In-frame gene deletion mutagenesis, siderophore detection assays, and voltammetric techniques were combined to determine (i) if the Fe(III)-solubilizing organic ligands produced by S. oneidensis during anaerobic Fe(III) oxide respiration were synthesized via siderophore biosynthesis systems and (ii) if the Fe(III)-siderophore reductase was required for respiration of soluble organic Fe(III) as an anaerobic electron acceptor. Genes predicted to encode the siderophore (hydroxamate) biosynthesis system (SO3030 to SO3032), the Fe(III)-hydroxamate receptor (SO3033), and the Fe(III)-hydroxamate reductase (SO3034) were identified in the S. oneidensis genome, and corresponding in-frame gene deletion mutants were constructed. DeltaSO3031 was unable to synthesize siderophores or produce soluble organic Fe(III) during aerobic respiration yet retained the ability to solubilize and respire Fe(III) at wild-type rates during anaerobic Fe(III) oxide respiration. DeltaSO3034 retained the ability to synthesize siderophores during aerobic respiration and to solubilize and respire Fe(III) at wild-type rates during anaerobic Fe(III) oxide respiration. These findings indicate that the Fe(III)-solubilizing organic ligands produced by S. oneidensis during anaerobic Fe(III) oxide respiration are not synthesized via the hydroxamate biosynthesis system and that the Fe(III)-hydroxamate reductase is not essential for respiration of Fe(III)-citrate or Fe(III)-nitrilotriacetic acid (NTA) as an anaerobic electron acceptor.

  11. Denitrification by plant roots? New aspects of plant plasma membrane-bound nitrate reductase.

    PubMed

    Eick, Manuela; Stöhr, Christine

    2012-10-01

    A specific form of plasma membrane-bound nitrate reductase in plants is restricted to roots. Two peptides originated from plasma membrane integral proteins isolated from Hordeum vulgare have been assigned as homologues to the subunit NarH of respiratory nitrate reductase of Escherichia coli. Corresponding sequences have been detected for predicted proteins of Populus trichocarpa with high degree of identities for the subunits NarH (75%) and NarG (65%), however, with less accordance for the subunit NarI. These findings coincide with biochemical properties, particularly in regard to the electron donors menadione and succinate. Together with the root-specific and plasma membrane-bound nitrite/NO reductase, nitric oxide is produced under hypoxic conditions in the presence of nitrate. In this context, a possible function in nitrate respiration of plant roots and an involvement of plants in denitrification processes are discussed.

  12. Investigation of fluidized-bed biological denitrification

    SciTech Connect

    Acox, T.A.

    1982-12-16

    The performance of the fluidized-bed bioreactor was modelled for denitrification using a multiple linear regression. Reasonable accuracy was obtained; however, this type of analysis did not take into account the hydraulic characteristics of the fluidized-bed. The Mulcahy and LaMotta computer program previously used to model a fluidized-bed bioreactor cannot be used in this case due to the Michaelis-Menton constant k determined in this study, which was one to two orders of magnitude lower. With some additional bioreactor study and computer program modification, this may prove to be of some benefit.

  13. C4-Dicarboxylate Utilization in Aerobic and Anaerobic Growth.

    PubMed

    Unden, Gottfried; Strecker, Alexander; Kleefeld, Alexandra; Kim, Ok Bin

    2016-06-01

    C4-dicarboxylates and the C4-dicarboxylic amino acid l-aspartate support aerobic and anaerobic growth of Escherichia coli and related bacteria. In aerobic growth, succinate, fumarate, D- and L-malate, L-aspartate, and L-tartrate are metabolized by the citric acid cycle and associated reactions. Because of the interruption of the citric acid cycle under anaerobic conditions, anaerobic metabolism of C4-dicarboxylates depends on fumarate reduction to succinate (fumarate respiration). In some related bacteria (e.g., Klebsiella), utilization of C4-dicarboxylates, such as tartrate, is independent of fumarate respiration and uses a Na+-dependent membrane-bound oxaloacetate decarboxylase. Uptake of the C4-dicarboxylates into the bacteria (and anaerobic export of succinate) is achieved under aerobic and anaerobic conditions by different sets of secondary transporters. Expression of the genes for C4-dicarboxylate metabolism is induced in the presence of external C4-dicarboxylates by the membrane-bound DcuS-DcuR two-component system. Noncommon C4-dicarboxylates like l-tartrate or D-malate are perceived by cytoplasmic one-component sensors/transcriptional regulators. This article describes the pathways of aerobic and anaerobic C4-dicarboxylate metabolism and their regulation. The citric acid cycle, fumarate respiration, and fumarate reductase are covered in other articles and discussed here only in the context of C4-dicarboxylate metabolism. Recent aspects of C4-dicarboxylate metabolism like transport, sensing, and regulation will be treated in more detail. This article is an updated version of an article published in 2004 in EcoSal Plus. The update includes new literature, but, in particular, the sections on the metabolism of noncommon C4-dicarboxylates and their regulation, on the DcuS-DcuR regulatory system, and on succinate production by engineered E. coli are largely revised or new.

  14. C4-Dicarboxylate Utilization in Aerobic and Anaerobic Growth.

    PubMed

    Unden, Gottfried; Strecker, Alexander; Kleefeld, Alexandra; Kim, Ok Bin

    2016-06-01

    C4-dicarboxylates and the C4-dicarboxylic amino acid l-aspartate support aerobic and anaerobic growth of Escherichia coli and related bacteria. In aerobic growth, succinate, fumarate, D- and L-malate, L-aspartate, and L-tartrate are metabolized by the citric acid cycle and associated reactions. Because of the interruption of the citric acid cycle under anaerobic conditions, anaerobic metabolism of C4-dicarboxylates depends on fumarate reduction to succinate (fumarate respiration). In some related bacteria (e.g., Klebsiella), utilization of C4-dicarboxylates, such as tartrate, is independent of fumarate respiration and uses a Na+-dependent membrane-bound oxaloacetate decarboxylase. Uptake of the C4-dicarboxylates into the bacteria (and anaerobic export of succinate) is achieved under aerobic and anaerobic conditions by different sets of secondary transporters. Expression of the genes for C4-dicarboxylate metabolism is induced in the presence of external C4-dicarboxylates by the membrane-bound DcuS-DcuR two-component system. Noncommon C4-dicarboxylates like l-tartrate or D-malate are perceived by cytoplasmic one-component sensors/transcriptional regulators. This article describes the pathways of aerobic and anaerobic C4-dicarboxylate metabolism and their regulation. The citric acid cycle, fumarate respiration, and fumarate reductase are covered in other articles and discussed here only in the context of C4-dicarboxylate metabolism. Recent aspects of C4-dicarboxylate metabolism like transport, sensing, and regulation will be treated in more detail. This article is an updated version of an article published in 2004 in EcoSal Plus. The update includes new literature, but, in particular, the sections on the metabolism of noncommon C4-dicarboxylates and their regulation, on the DcuS-DcuR regulatory system, and on succinate production by engineered E. coli are largely revised or new. PMID:27415771

  15. Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis.

    PubMed

    Slavov, Nikolai; Budnik, Bogdan A; Schwab, David; Airoldi, Edoardo M; van Oudenaarden, Alexander

    2014-05-01

    Fermenting glucose in the presence of enough oxygen to support respiration, known as aerobic glycolysis, is believed to maximize growth rate. We observed increasing aerobic glycolysis during exponential growth, suggesting additional physiological roles for aerobic glycolysis. We investigated such roles in yeast batch cultures by quantifying O2 consumption, CO2 production, amino acids, mRNAs, proteins, posttranslational modifications, and stress sensitivity in the course of nine doublings at constant rate. During this course, the cells support a constant biomass-production rate with decreasing rates of respiration and ATP production but also decrease their stress resistance. As the respiration rate decreases, so do the levels of enzymes catalyzing rate-determining reactions of the tricarboxylic-acid cycle (providing NADH for respiration) and of mitochondrial folate-mediated NADPH production (required for oxidative defense). The findings demonstrate that exponential growth can represent not a single metabolic/physiological state but a continuum of changing states and that aerobic glycolysis can reduce the energy demands associated with respiratory metabolism and stress survival.

  16. Dance--Aerobic and Anaerobic.

    ERIC Educational Resources Information Center

    Cohen, Arlette

    1984-01-01

    This article defines and explains aerobic exercise and its effects on the cardiovascular system. Various studies on dancers are cited indicating that dance is an anaerobic activity with some small degree of aerobic benefit. (DF)

  17. Simultaneous nitrification, denitrification and phosphorus removal (SNDPR) in a full-scale water reclamation plant located in warm climate.

    PubMed

    Yang, Qin; Shen, Nan; Lee, Zarraz M-P; Xu, Guangjing; Cao, Yeshi; Kwok, Beehong; Lay, Winson; Liu, Yu; Zhou, Yan

    2016-01-01

    The combination of simultaneous nitrification-denitrification (SND) with enhanced biological phosphorus removal (EBPR) provides a more efficient and economically viable option for nutrient removal from municipal wastewater compared to conventional two-step nitrification-denitrification. This study analyzed the nutrients (N and P) profiles in a full-scale municipal wastewater reclamation plant (WRP) located in the tropical region, in which more than 90% of nitrogen was removed. Interestingly, average SND efficiency in aerobic zones was found to be up to 50%, whereas phosphorus profile displayed a clear cyclic release and uptake pattern with a phosphorus removal efficiency of up to 76%. The capability of sludge to perform SND and EBPR was further confirmed through a series of batch experiments. Microbial analysis revealed the presence of Accumulibacter and Tetrasphaera phosphate accumulating organisms in the plant, while few glycogen accumulating organisms (GAO) was observed. This study showed the significant occurrence of combined SND and EBPR, known as simultaneous nitrification, denitrification and phosphorus removal (SNDPR), in the studied WRP under warm climate. The possible causes behind the observed SNDPR were also discussed. PMID:27438250

  18. Simultaneous nitrification, denitrification and phosphorus removal (SNDPR) in a full-scale water reclamation plant located in warm climate.

    PubMed

    Yang, Qin; Shen, Nan; Lee, Zarraz M-P; Xu, Guangjing; Cao, Yeshi; Kwok, Beehong; Lay, Winson; Liu, Yu; Zhou, Yan

    2016-01-01

    The combination of simultaneous nitrification-denitrification (SND) with enhanced biological phosphorus removal (EBPR) provides a more efficient and economically viable option for nutrient removal from municipal wastewater compared to conventional two-step nitrification-denitrification. This study analyzed the nutrients (N and P) profiles in a full-scale municipal wastewater reclamation plant (WRP) located in the tropical region, in which more than 90% of nitrogen was removed. Interestingly, average SND efficiency in aerobic zones was found to be up to 50%, whereas phosphorus profile displayed a clear cyclic release and uptake pattern with a phosphorus removal efficiency of up to 76%. The capability of sludge to perform SND and EBPR was further confirmed through a series of batch experiments. Microbial analysis revealed the presence of Accumulibacter and Tetrasphaera phosphate accumulating organisms in the plant, while few glycogen accumulating organisms (GAO) was observed. This study showed the significant occurrence of combined SND and EBPR, known as simultaneous nitrification, denitrification and phosphorus removal (SNDPR), in the studied WRP under warm climate. The possible causes behind the observed SNDPR were also discussed.

  19. Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments

    NASA Astrophysics Data System (ADS)

    D'Hondt, Steven; Inagaki, Fumio; Zarikian, Carlos Alvarez; Abrams, Lewis J.; Dubois, Nathalie; Engelhardt, Tim; Evans, Helen; Ferdelman, Timothy; Gribsholt, Britta; Harris, Robert N.; Hoppie, Bryce W.; Hyun, Jung-Ho; Kallmeyer, Jens; Kim, Jinwook; Lynch, Jill E.; McKinley, Claire C.; Mitsunobu, Satoshi; Morono, Yuki; Murray, Richard W.; Pockalny, Robert; Sauvage, Justine; Shimono, Takaya; Shiraishi, Fumito; Smith, David C.; Smith-Duque, Christopher E.; Spivack, Arthur J.; Steinsbu, Bjorn Olav; Suzuki, Yohey; Szpak, Michal; Toffin, Laurent; Uramoto, Goichiro; Yamaguchi, Yasuhiko T.; Zhang, Guo-Liang; Zhang, Xiao-Hua; Ziebis, Wiebke

    2015-04-01

    The depth of oxygen penetration into marine sediments differs considerably from one region to another. In areas with high rates of microbial respiration, O2 penetrates only millimetres to centimetres into the sediments, but active anaerobic microbial communities are present in sediments hundreds of metres or more below the sea floor. In areas with low sedimentary respiration, O2 penetrates much deeper but the depth to which microbial communities persist was previously unknown. The sediments underlying the South Pacific Gyre exhibit extremely low areal rates of respiration. Here we show that, in this region, microbial cells and aerobic respiration persist through the entire sediment sequence to depths of at least 75 metres below sea floor. Based on the Redfield stoichiometry of dissolved O2 and nitrate, we suggest that net aerobic respiration in these sediments is coupled to oxidation of marine organic matter. We identify a relationship of O2 penetration depth to sedimentation rate and sediment thickness. Extrapolating this relationship, we suggest that oxygen and aerobic communities may occur throughout the entire sediment sequence in 15-44% of the Pacific and 9-37% of the global sea floor. Subduction of the sediment and basalt from these regions is a source of oxidized material to the mantle.

  20. Hydrogenotrophic denitrification in a microporous membrane bioreactor.

    PubMed

    Mansell, Bruce O; Schroeder, Edward D

    2002-11-01

    Hydrogenotrophic denitrification of nitrate contaminated groundwater in a bench-scale microporous membrane bioreactor has been investigated. To prevent microbial contamination of the effluent from the reactor the nitrate-laden water treated was separated from the denitrifying culture with a 0.02 microm pore diameter membrane. Equal pressure was maintained across the membrane and nitrate was removed by molecular diffusion through the membrane and into the denitrifying culture. The system was operated with a hydrogenotrophic denitrification culture to circumvent the addition of an organic substrate to the water. Removal efficiencies ranging from 96% to 92% were achieved at influent concentrations ranging from 20 to 40 mg/L NO3(-)-N. The flux values achieved in this study were 2.7-5.3 g NO3-N m 2d(-1). The microporous membrane served as an effective barrier for preventing microbial contamination of the product water as evidenced by the effluent heterotrophic plate count of 9 (+/- 3.5) CFU/mL. The hydrogenotrophic culture was analyzed using available 16S and 23S rRNA-targeted oligonucleotide probes. It was determined that the enrichment process selected for organisms belonging to the beta subclass of Proteobacteria. Further analysis of the hydrogenotrophic culture indicated that the organisms may belong to the beta-3 subgroup of Proteobacteria and have yet to be identified as hydrogenotrophic denitrifiers.

  1. Modeling enhanced in situ denitrification in groundwater

    USGS Publications Warehouse

    Killingstad, M.W.; Widdowson, M.A.; Smith, R.L.

    2002-01-01

    A two-dimensional numerical solute transport model was developed for simulating an enhanced in situ denitrification experiment performed in a nitrate-contaminated aquifer on Cape Cod, Massachusetts. In this experiment, formate (HCOO-) was injected for a period of 26 days into the carbon-limited aquifer to stimulate denitrification. Calibration of the vertical-profile site model was demonstrated through error analysis and comparison with formate, nitrate, and nitrite concentration data monitored along a transect of three multilevel groundwater sampling wells for 75 days after initial injection. Formate utilization rates were approximately 142 and 38 ??M/day for nitrate and nitrite reduction, respectively. Nitrate and nitrite utilization rates were approximately 29 and 8 ??M/day, respectively. Nitrate utilization rates under enhanced conditions were 1 order of magnitude greater than previously reported naturally occurring rates. The nitrite production rate was approximately 29 ??M/day. Persistence of nitrite was attributed to a combination of factors, including electron donor (formate) limitation late in the experiment, preferential utilization of nitrate as an electron acceptor, and greater nitrite production relative to nitrite utilization.

  2. Growth and energy metabolism in aerobic fed-batch cultures of Saccharomyces cerevisiae: Simulation and model verification

    SciTech Connect

    Pham, H.T.B.; Larsson, G.; Enfors, S.O.

    1998-11-20

    Some yeast species are classified as being glucose sensitive, which means that they may produce ethanol also under aerobic conditions when the sugar concentration is high. A kinetic model of overflow metabolism in Saccharomyces cerevisiae was used for simulation of aerobic fed-batch cultivations. An inhibitory effect of ethanol on the maximum respiration of the yeast was observed in the experiments and included in the model. The model predicts respiration, biomass, and ethanol formation and the subsequent ethanol consumption, and was experimentally validated in fed-batch cultivations. Oscillating sugar feed with resulting oscillating carbon dioxide production did not influence the maximum respiration rate, which indicates that the pyruvate dehydrogenase complex is not involved as a bottleneck causing aerobic ethanol formation.

  3. Tillage Effects on Soil Properties & Respiration

    NASA Astrophysics Data System (ADS)

    Rusu, Teodor; Bogdan, Ileana; Moraru, Paula; Pop, Adrian; Duda, Bogdan; Cacovean, Horea; Coste, Camelia

    2015-04-01

    Soil tillage systems can be able to influence soil compaction, water dynamics, soil temperature and soil structural condition. These processes can be expressed as changes of soil microbiological activity, soil respiration and sustainability of agriculture. Objectives of this study were: 1) to assess the effects of tillage systems (Conventional System-CS, Minimum Tillage-MT, No-Tillage-NT) on soil compaction, soil temperature, soil moisture and soil respiration and 2) to establish the relationship that exists in changing soil properties. Three treatments were installed: CS-plough + disc; MT-paraplow + rotary grape; NT-direct sowing. The study was conducted on an Argic-Stagnic Faeoziom. The MT and NT applications reduce or completely eliminate the soil mobilization, due to this, soil is compacted in the first year of application. The degree of compaction is directly related to soil type and its state of degradation. The state of soil compaction diminished over time, tending toward a specific type of soil density. Soil moisture was higher in NT and MT at the time of sowing and in the early stages of vegetation and differences diminished over time. Moisture determinations showed statistically significant differences. The MT and NT applications reduced the thermal amplitude in the first 15 cm of soil depth and increased the soil temperature by 0.5-2.20C. The determinations confirm the effect of soil tillage system on soil respiration; the daily average was lower at NT (315-1914 mmoli m-2s-1) and followed by MT (318-2395 mmoli m-2s-1) and is higher in the CS (321-2480 mmol m-2s-1). Comparing with CS, all the two conservation tillage measures decreased soil respiration, with the best effects of no-tillage. An exceeding amount of CO2 produced in the soil and released into the atmosphere, resulting from aerobic processes of mineralization of organic matter (excessive loosening) is considered to be not only a way of increasing the CO2 in the atmosphere, but also a loss of

  4. Bioirrigation impacts on sediment respiration and microbial metabolic activity

    NASA Astrophysics Data System (ADS)

    Baranov, V. A.; Lewandowski, J.; Romeijn, P.; Krause, S.

    2015-12-01

    Some bioturbators build tubes in the sediment and pump water through their burrows (ventilation). Oxygen is transferred through the burrow walls in the adjacent sediment (bioirrigation). Bioirrigation is playing a pivotal role in the mediation of biogeochemical processes in lake sediments and has the potential to enhance nutrient cycling. The present study investigates the impact of bioirrigation on lake sediment metabolism, respiration rates and in particular, the biogeochemical impacts of bioirrigation intensity as a function of organism density. We therefore apply the bioreactive Resazurin/Resorufin smart tracer system for quantifying the impact of different densities of Chironomidae (Diptera) larvae (0-2112 larvae/m2) on lake sediment respiration in a microcosm experiment. Tracer decay has been found to be proportional to the amount of the aerobic respiration at the sediment-water interface. Tracer transformation was in good agreement with Chironomidae density (correlation, r=0.9). Tracer transformation rates (and sediment respiration) were found to be correlated to Chironomidae density, with highest transformation rates observed in the microcosms with highest density of 2112 larvae/m2. This relationship was not linear though, with sediment respiration rates at the highest larvae densities declining from the linear trend predicted from lower and intermediate larvae density-respiration relationships. We interpret this effect as a density dependent suppression of the Chironomid's metabolic activity. The observations of this study have implications for eutrophied lakes with high densities of bioirrigators. Despite high density of bioirrigirrigating benthos, mineralization of the organic matter in such habitats would likely be lower than in lakes with intermediate densities of the bioturbators.

  5. Treating low carbon/nitrogen (C/N) wastewater in simultaneous nitrification-endogenous denitrification and phosphorous removal (SNDPR) systems by strengthening anaerobic intracellular carbon storage.

    PubMed

    Wang, Xiaoxia; Wang, Shuying; Xue, Tonglai; Li, Baikun; Dai, Xian; Peng, Yongzhen

    2015-06-15

    A novel simultaneous nitrification denitrification and phosphorous removal-sequencing batch reactor (SNDPR-SBR) enriched with PAOs (phosphorus accumulating organisms), DPAOs (denitrifying PAOs), and GAOs (glycogen accumulating organisms) at the ratio of 2:1:1 was developed to achieve the simultaneous nutrient and carbon removal treating domestic wastewater with low carbon/nitrogen ratio (≤3.5). The SNDPR system was operated for 120 days at extended anaerobic stage (3 h) and short aerobic stage at low oxygen concentration (2.5 h) with short sludge retention time (SRT) of 10.9 d and hydraulic retention time (HRT) of 14.6 h. The results showed that at the stable operating stage, the average effluent chemical oxygen demand (COD) and PO4(3-)-P concentrations were 47.2 and 0.2 mg L(-1), respectively, the total nitrogen (TN) removal efficiency was 77.7%, and the SND efficiency reached 49.3%. Extended anaerobic stage strengthened the intracellular carbon (mainly poly-β-hydroxybutyrate, PHB) storage, efficiently utilized the organic substances in wastewater, and provided sufficient carbon sources for denitrification and phosphorus uptake without external carbon addition. Short aerobic stage at low oxygen concentration (dissolved oxygen (DO): 1 ± 0.3 mg L(-1)) achieved a concurrence of nitrification, endogenous denitrification, denitrifying and aerobic phosphorus uptake, and saved about 65% energy consumption for aeration. Microbial community analysis demonstrated that P removal was mainly performed by aerobic PAOs while N removal was mainly carried out by denitrifying GAOs (DGAOs), even though DPAOs were also participated in both N and P removal.

  6. [Impact of different nitrogen concentrations on the N2O production in the denitrification process of granular sludge].

    PubMed

    Han, Xue; Gao, Da-Wen

    2013-01-01

    The aerobic-anoxic SBR biological wastewater treatment systems were used to examine the impact of different influent NH4(+) -N concentrations on the release of N2O and nitrogen removal in the simultaneous nitrification and denitrification of granular sludge. The results showed that when the influent NH4(+) -N concentration suddenly increased from the stable concentrations of 30 mg x L(-1) to 40 mg x L(-1), 60 mg x L(-1) and 80 mg x L(-1), the ammonia removal rate decreased from 80.04% to 61.40%, 39.65% and 31.02%, respectively, however, the ammonia nitrogen removal amount underwent little change, being about 25 mg x L(-1) in all cases; in addition, there was little influence of influent NH4(+) -N on the N2O production, under the four different influent NH4(+) -N concentrations, the N2O production in a typical cycle was 3.019 mg x m(-3), 3.489 mg x m(-3), 3.271 mg x m(-3), and 3.490 mg x m(-3), respectively, and the N2O emission rates were all around 0.0045 mg x (m3 x min)(-1). N2O was produced in both the aerobic stage and anoxic stage of the granular sludge simultaneous nitrification and denitrification system. Under different influent NH4(+) -N concentrations, the amount of NH4(+) -N removal by the granular sludge simultaneous nitrification and denitrification system was not changed, but significant decrease in nitrogen removal rate was observed with the increase in the influent NH4(+) -N concentration.

  7. Pyruvate kinase triggers a metabolic feedback loop that controls redox metabolism in respiring cells.

    PubMed

    Grüning, Nana-Maria; Rinnerthaler, Mark; Bluemlein, Katharina; Mülleder, Michael; Wamelink, Mirjam M C; Lehrach, Hans; Jakobs, Cornelis; Breitenbach, Michael; Ralser, Markus

    2011-09-01

    In proliferating cells, a transition from aerobic to anaerobic metabolism is known as the Warburg effect, whose reversal inhibits cancer cell proliferation. Studying its regulator pyruvate kinase (PYK) in yeast, we discovered that central metabolism is self-adapting to synchronize redox metabolism when respiration is activated. Low PYK activity activated yeast respiration. However, levels of reactive oxygen species (ROS) did not increase, and cells gained resistance to oxidants. This adaptation was attributable to accumulation of the PYK substrate phosphoenolpyruvate (PEP). PEP acted as feedback inhibitor of the glycolytic enzyme triosephosphate isomerase (TPI). TPI inhibition stimulated the pentose phosphate pathway, increased antioxidative metabolism, and prevented ROS accumulation. Thus, a metabolic feedback loop, initiated by PYK, mediated by its substrate and acting on TPI, stimulates redox metabolism in respiring cells. Originating from a single catalytic step, this autonomous reconfiguration of central carbon metabolism prevents oxidative stress upon shifts between fermentation and respiration.

  8. Potential importance of physiologically diverse benthic foraminifera in sedimentary nitrate storage and respiration

    NASA Astrophysics Data System (ADS)

    Bernhard, Joan M.; Casciotti, Karen L.; McIlvin, Matthew R.; Beaudoin, David J.; Visscher, Pieter T.; Edgcomb, Virginia P.

    2012-09-01

    Until recently, the process of denitrification (conversion of nitrate or nitrite to gaseous products) was thought to be performed exclusively by prokaryotes and fungi. The finding that foraminifera perform complete denitrification could impact our understanding of nitrate removal in sediments as well as our understanding of eukaryotic respiration, especially if it is widespread. However, details of this process and the subcellular location of these reactions in foraminifera remain uncertain. For example, prokaryotic endobionts, rather than the foraminifer proper, could perform denitrification, as has been shown recently in an allogromiid foraminifer. Here, intracellular nitrate concentrations and isotope ratios (δ15NNO3 and δ18ONO3) were measured to assess the nitrate dynamics in four benthic foraminiferal species (Bolivina argentea, Buliminella tenuata, Fursenkoina cornuta, Nonionella stella) with differing cellular architecture and associations with microbial endobionts, recovered from Santa Barbara Basin, California. Cellular nitrate concentrations were high (12-217 mM) in each species, and intracellular nitrate often had elevated δ15NNO3 and δ18ONO3 values. Experiments including suboxic and anoxic incubations of B. argentea revealed a decrease in intracellular nitrate concentration and an increase in δ15NNO3 and δ18ONO3over time, indicating nitrate respiration and/or denitrification within the foraminifera. Results illustrate that nitrate reduction occurs in a range of foraminiferal species, including some possessing endobionts (including a chloroplast-sequestering species) and others lacking endobionts, implying that microbial associates may not solely be responsible for this process in foraminifera. Furthermore, we show that benthic foraminifera may represent important reservoirs of nitrate storage in sediments, as well as mediators of its removal.

  9. Hybrid respiration-signal conditioner

    NASA Technical Reports Server (NTRS)

    Rinard, G. A.; Steffen, D. A.; Sturm, R. E.

    1979-01-01

    Hybrid impedance-pneumograph and respiration-rate signal conditioner element of hand-held vital signs monitor measures changes in impedance of chest during breathing cycle and generates analog respiration signal as output along with synchronous square wave that can be monitored by breath-rate processor.

  10. Late Archean rise of aerobic microbial ecosystems

    PubMed Central

    Eigenbrode, Jennifer L.; Freeman, Katherine H.

    2006-01-01

    We report the 13C content of preserved organic carbon for a 150 million-year section of late Archean shallow and deepwater sediments of the Hamersley Province in Western Australia. We find a 13C enrichment of ≈10‰ in organic carbon of post-2.7-billion-year-old shallow-water carbonate rocks relative to deepwater sediments. The shallow-water organic-carbon 13C content has a 29‰ range in values (−57 to −28‰), and it contrasts with the less variable but strongly 13C-depleted (−40 to −45‰) organic carbon in deepwater sediments. The 13C enrichment likely represents microbial habitats not as strongly influenced by assimilation of methane or other 13C-depleted substrates. We propose that continued oxidation of shallow settings favored the expansion of aerobic ecosystems and respiring organisms, and, as a result, isotopic signatures of preserved organic carbon in shallow settings approached that of photosynthetic biomass. Facies analysis of published carbon-isotopic records indicates that the Hamersley shallow-water signal may be representative of a late Archean global signature and that it preceded a similar, but delayed, 13C enrichment of deepwater deposits. The data suggest that a global-scale expansion of oxygenated habitats accompanied the progression away from anaerobic ecosystems toward respiring microbial communities fueled by oxygenic photosynthesis before the oxygenation of the atmosphere after 2.45 billion years ago. PMID:17043234

  11. Monitoring operational and leachate characteristics of an aerobic simulated landfill bioreactor.

    PubMed

    Giannis, A; Makripodis, G; Simantiraki, F; Somara, M; Gidarakos, E

    2008-01-01

    Long-term biodegradation of MSW in an aerobic landfill bioreactor was monitored as a function of time during 510 days of operation. Operational characteristics such as air importation, temperature and leachate recirculation were monitored. The oxygen utilization rates and biodegradation of organic matter rates showed that aerobic biodegradation was feasible and appropriate to proceed in aerobic landfill bioreactor. Leachate analyses showed that the aerobic bioreactor could remove above 90% of chemical oxygen demand (COD) and close to 100% of biochemical oxygen demand (BOD5) from leachate. Ammonium (NH4+), nitrate (NO3-) and sulphate (SO4(2-)) concentrations of leachate samples were regularly measured. Results suggest that nitrification and denitrification occurred simultaneously, and the increase in nitrate did not reach the levels predicted stoichiometrically, suggesting that other processes were occurring. Leachate recirculation reduced the concentrations of heavy metals because of the effect of the high pH of the leachate, causing heavy metals to be retained by processes such as sorption on MSW, carbonate precipitation, and hydroxide precipitation. Furthermore, the compost derived from the aerobic biodegradation of the organic matter of MSW may be considered as soil improvement in the agricultural plant production. Bio-essays indicated that the ecotoxicity of leachate from the aerobic bioreactor was not toxic at the end of the experiment. Finally, after 510 days of degradation, waste settlement reached 26% mainly due to the compost of the organic matter.

  12. Summer nitrate uptake and denitrification in an upper Mississippi River backwater lake: The role of rooted aquatic vegetation

    USGS Publications Warehouse

    Kreiling, Rebecca M.; Richardson, W.B.; Cavanaugh, J.C.; Bartsch, L.A.

    2011-01-01

    In-stream nitrogen processing in the Mississippi River has been suggested as one mechanism to reduce coastal eutrophication in the Gulf of Mexico. Aquatic macrophytes in river channels and flood plain lakes have the potential to temporarily remove large quantities of nitrogen through assimilation both by themselves and by the attached epiphyton. In addition, rooted macrophytes act as oxygen pumps, creating aerobic microsites around their roots where coupled nitrification-denitrification can occur. We used in situ 15N-NO3- tracer mesocosm experiments to measure nitrate assimilation rates for macrophytes, epiphyton, and microbial fauna in the sediment in Third Lake, a backwater lake of the upper Mississippi River during June and July 2005. We measured assimilation over a range of nitrate concentrations and estimated a nitrate mass balance for Third Lake. Macrophytes assimilated the most nitrate (29.5 mg N m-2 d-1) followed by sediment microbes (14.4 mg N m-2 d-1) and epiphytes (5.7 mg N m-2d-1. Assimilation accounted for 6.8% in June and 18.6% in July of total nitrate loss in the control chambers. However, denitrification (292.4 mg N m-2 d-1) is estimated to account for the majority (82%) of the nitrate loss. Assimilation and denitrification rates generally increased with increasing nitrate concentration but denitrification rates plateaued at about 5 mg N L-1. This suggests that backwaters have the potential to remove a relatively high amount of nitrate but will likely become saturated if the load becomes too large. ?? 2010 US Government.

  13. Effects of cyanobacterial-driven pH increases on sediment nutrient fluxes and coupled nitrification-denitrification in a shallow fresh water estuary

    NASA Astrophysics Data System (ADS)

    Gao, Y.; Cornwell, J. C.; Stoecker, D. K.; Owens, M. S.

    2012-07-01

    Summer cyanobacterial blooms caused an elevation in pH (9 to ~10.5) that lasted for weeks in the shallow and tidal-fresh region of the Sassafras River, a tributary of Chesapeake Bay (USA). Elevated pH promoted desorption of sedimentary inorganic phosphorus and facilitated conversion of ammonium (NH4+) to ammonia (NH3). In this study, we investigated pH effects on exchangeable NH4+ desorption, pore water diffusion and the flux rates of NH4+, soluble reactive phosphorus (SRP) and nitrate (NO3-), nitrification, denitrification, and oxygen consumption. Elevated pH enhanced desorption of exchangeable NH4+ through NH3 formation from both pore water and adsorbed NH4+ pools. Progressive penetration of high pH from the overlying water into sediment promoted the mobility of SRP and the release of total ammonium (NH4+ and NH3) into the pore water. At elevated pH levels, high sediment-water effluxes of SRP and total ammonium were associated with reduction of nitrification, denitrification and oxygen consumption rates. Alkaline pH and the toxicity of NH3 may inhibit nitrification in the thin aerobic zone, simultaneously constraining coupled nitrification-denitrification with limited NO3- supply and high pH penetration into the anaerobic zone. Geochemical feedbacks to pH elevation, such as enhancement of dissolved nutrient effluxes and reduction in N2 loss via denitrification, may enhance the persistence of cyanobacterial blooms in shallow water ecosystems.

  14. Effects of cyanobacterial-driven pH increases on sediment nutrient fluxes and coupled nitrification-denitrification in a shallow fresh water estuary

    NASA Astrophysics Data System (ADS)

    Gao, Y.; Cornwell, J. C.; Stoecker, D. K.; Owens, M. S.

    2012-01-01

    Summer cyanobacterial blooms caused an elevation in pH (9 to ~10.5) that lasted for weeks in the shallow and tidal-fresh region of the Sassafras River, a tributary of Chesapeake Bay (USA). Elevated pH promoted desorption of sedimentary inorganic phosphorus and facilitated conversion of ammonium (NH4+) to ammonia (NH3). In this study, we investigated pH effects on exchangeable NH4+ desorption, nutrient pore water diffusion and flux rates of NH4+, soluble reactive phosphorus (SRP), nitrate (NO3-), nitrification, denitrification, and oxygen consumption. pH elevation enhanced the desorption of exchangeable NH4+ because of NH3 formation from both pore water and adsorbed NH4+ pools. Progressive penetration of high pH from the overlying water into sediment promoted the release of SRP and total ammonium (NH4+ and NH3) into pore water. At elevated pH, high sediment-water effluxes of SRP and total ammonium were associated with reduction in nitrification, denitrification and oxygen consumption rates. Alkaline pH and the toxicity of NH3 may inhibit nitrification in the thin aerobic zone, simultaneously constraining coupled nitrification-denitrification with limited NO3- supply and high pH penetration into the anaerobic zone. Geochemical feedbacks to pH elevation, such as enhancement of dissolved nutrient effluxes and reduction in N2 loss via denitrification, may be responsible for the persistence of cyanobacterial blooms in shallow water ecosystems.

  15. Comparing Denitrification Rates and Carbon Sources in Commercial Scale Upflow Denitrification Biological Filters in Aquaculture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aerobic biological filtration systems employing nitrifying bacteria to remediate excess ammonia and nitrite concentrations are common components of recirculating aquaculture systems (RAS). However, significant water exchange may still be necessary to reduce nitrate concentrations to acceptable leve...

  16. Denitrification in alluvial wetlands in an urban landscape.

    PubMed

    Harrison, Melanie D; Groffman, Peter M; Mayer, Paul M; Kaushal, Sujay S; Newcomer, Tamara A

    2011-01-01

    Riparian wetlands have been shown to be effective "sinks" for nitrate N (NO3-), minimizing the downstream export of N to streams and coastal water bodies. However, the vast majority of riparian denitrification research has been in agricultural and forested watersheds, with relatively little work on riparian wetland function in urban watersheds. We investigated the variation and magnitude of denitrification in three constructed and two relict oxbow urban wetlands, and in two forested reference wetlands in the Baltimore metropolitan area. Denitrification rates in wetland sediments were measured with a 15N-enriched NO3- "push-pull" groundwater tracer method during the summer and winter of 2008. Mean denitrification rates did not differ among the wetland types and ranged from 147 +/- 29 microg N kg soil(-1) d(-1) in constructed stormwater wetlands to 100 +/- 11 microg N kg soil(-1) d(-1) in relict oxbows to 106 +/- 32 microg N kg soil(-1) d(-1) in forested reference wetlands. High denitrification rates were observed in both summer and winter, suggesting that these wetlands are sinks for NO3- year round. Comparison of denitrification rates with NO3- standing stocks in the wetland water column and stream NO3- loads indicated that mass removal of NO3- in urban wetland sediments by denitrification could be substantial. Our results suggest that urban wetlands have the potential to reduce NO3- in urban landscapes and should be considered as a means to manage N in urban watersheds. PMID:21520770

  17. Biological process design and pilot testing for a carbon oxidation, nitrification, and denitrification system

    SciTech Connect

    Givens, S.W.; Brown, E.V. ); Gelman, S.R. ); Grady, C.P.L. Jr. ); Skedsvold, D.A. )

    1991-05-01

    In response to a new NPDES permit incorporating Organic Chemical, Plastic, and Synthetic Fiber (OCPSF) effluent limits for BOD (carbonaceous and nitrogenous), TSS, and priority pollutants, a treatability study was conducted to establish design criteria for a new process wastewater treatment plant for DSM Chemicals North America, Inc. The permit also requires partial removal of total nitrogen. Based on the discharge criteria, a two-stage biological process configuration was selected. The configuration consisted of an anoxic followed by an aerobic reactor with mixed liquor recirculation. To establish design criteria, a two-phase study was conducted. The first phase involved determining wastewater characteristics and kinetic and stoichiometric coefficients. These values were used as input to Simulation of Single-Sludge Processes (SSSP), a computer model that was used to evaluate potential process configurations. In the second phase, a pilot-scale system was operated to verify performance. With a volume distribution of 40% anoxic and 60% aerobic and recirculation ratio of 2, BOD, COD, and total nitrogen removal efficiencies of 99, 88, and 80% were obtained, respectively. Approximately 84% of the biodegradable COD was removed through denitrification.

  18. The real limits to marine life: a further critique of the Respiration Index

    NASA Astrophysics Data System (ADS)

    Seibel, B. A.; Childress, J. J.

    2013-05-01

    The recently proposed "Respiration Index" (RI = log PO2/PCO2) suggests that aerobic metabolism is limited by the ratio of reactants (oxygen) to products (carbon dioxide) according to the thermodynamics of cellular respiration. Here, we demonstrate further that, because of the large standard free energy change for organic carbon oxidation (ΔG° = -686 kcal mol-1), carbon dioxide can never reach concentrations that would limit the thermodynamics of this reaction. A PCO2 to PO2 ratio of 10503 would be required to reach equilibrium (equilibrium constant, Keq = 10503), where ΔG = 0. Thus, a Respiration Index of -503 would be the real thermodynamic limit to aerobic life. Such a Respiration Index is never reached, either in the cell or in the environment. Moreover, cellular respiration and oxygen provision are kinetically controlled such that, within limits, environmental oxygen and CO2 concentrations have little to do with intracellular concentrations. The RI is fundamentally different from the aragonite saturation state, a thermodynamic index used to quantify the potential effect of CO2 on calcification rates, because of its failure to incorporate the equilibrium constant of the reaction. Not only is the RI invalid, but its use leads to incorrect and misleading predictions of the threat of changing oxygen and carbon dioxide to marine life. We provide a physiological framework that identifies oxygen thresholds and allows for synergistic effects of ocean acidification and global warming.

  19. The real limits to marine life: a further critique of the Respiration Index

    NASA Astrophysics Data System (ADS)

    Seibel, B. A.; Childress, J. J.

    2012-11-01

    The recently proposed "Respiration Index" (RI = log[PO2]/[PCO2]) suggests that aerobic metabolism is limited by the ratio of reactants (R, oxygen) and products (P, carbon dioxide) according to the thermodynamics of cellular respiration. Here we demonstrate that, because of the large standard free energy change for organic carbon oxidation (ΔG° = -686 kcal mol-1), carbon dioxide can never reach concentrations that would limit the thermodynamics of this reaction. A PCO2 to PO2 ratio of 10503 would be required to reach equilibrium (equilibrium constant, Keq = 10503), where ΔG = 0. Thus a respiration index of -503 would be the real thermodynamic limit to aerobic life. Such a Respiration Index is never reached either in the cell or in the environment. Moreover cellular respiration and oxygen provision are kinetically controlled such that, within limits, environmental oxygen and CO2 concentrations have little to do with intracellular concentrations. The RI is fundamentally different from the aragonite saturation state, a thermodynamic index used to quantify the potential effect of CO2 on calcification rates, because of its failure to incorporate the equilibrium constant of the reaction. Not only is the RI invalid, its use leads to incorrect and dangerous predictions of the threat of changing oxygen and carbon dioxide to marine life. We provide a physiological model that identifies oxygen thresholds, and allows for synergistic effects of ocean acidification and global warming.

  20. Characteristics of Biological Nitrogen Removal in a Multiple Anoxic and Aerobic Biological Nutrient Removal Process

    PubMed Central

    Wang, Huoqing; Guan, Yuntao; Li, Li; Wu, Guangxue

    2015-01-01

    Two sequencing batch reactors, one with the conventional anoxic and aerobic (AO) process and the other with the multiple AO process, were operated to examine characteristics of biological nitrogen removal, especially of the multiple AO process. The long-term operation showed that the total nitrogen removal percentage of the multiple AO reactor was 38.7% higher than that of the AO reactor. In the multiple AO reactor, at the initial SBR cycle stage, due to the occurrence of simultaneous nitrification and denitrification, no nitrite and/or nitrate were accumulated. In the multiple AO reactor, activities of nitrite oxidizing bacteria were inhibited due to the multiple AO operating mode applied, resulting in the partial nitrification. Denitrifiers in the multiple AO reactor mainly utilized internal organic carbon for denitrification, and their activities were lower than those of denitrifiers in the AO reactor utilizing external organic carbon. PMID:26491676

  1. Respiration signals from photoplethysmography.

    PubMed

    Nilsson, Lena M

    2013-10-01

    respiratory modulation of the pulse oximeter waveform and has been shown to predict fluid responsiveness in mechanically ventilated patients including infants. The pleth variability index value depends on the size of the tidal volume and on positive end-expiratory pressure. In conclusion, the respiration modulation of the PPG signal can be used to monitor respiratory rate. It is probable that improvements in neural network technology will increase sensitivity and specificity for detecting both central and obstructive apnea. The size of the PPG respiration variation can predict fluid responsiveness in mechanically ventilated patients. PMID:23449854

  2. Heterotrophic denitrification of aquaculture effluent using fluidized sand biofilters

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The ability to consistently and cost-effectively reduce nitrate-nitrogen loads in effluent from recirculating aquaculture systems would enhance the industry's environmental stewardship and allow improved facility proximity to large markets in sensitive watersheds. Heterotrophic denitrification techn...

  3. Denitrification, Anammox, and N2 Production in Marine Sediments

    NASA Astrophysics Data System (ADS)

    Devol, Allan H.

    2015-01-01

    Fixed nitrogen limits primary productivity in many parts of the global ocean, and it consequently plays a role in controlling the carbon dioxide content of the atmosphere. The concentration of fixed nitrogen is determined by the balance between two processes: the fixation of nitrogen gas into organic forms by diazotrophs, and the reconversion of fixed nitrogen to nitrogen gas by denitrifying organisms. However, current sedimentary denitrification rates are poorly constrained, especially in permeable sediments, which cover the majority of the continental margin. Also, anammox has recently been shown to be an additional pathway for the loss of fixed nitrogen in sediments. This article briefly reviews sedimentary fixed nitrogen loss by sedimentary denitrification and anammox, including in sediments in contact with oxygen-deficient zones. A simple extrapolation of existing rate measurements to the global sedimentary denitrification rate yields a value smaller than many existing measurement-based estimates but still larger than the rate of water column denitrification.

  4. Comparison of aerobic denitrifying activity among three cultural species with various carbon sources.

    PubMed

    Otani, Y; Hasegawa, K; Hanaki, K

    2004-01-01

    Abilities of three aerobic denitrifiers such as Alcaligenes faecalis, Microvirgula aerodenitrificans and Paracoccus pantotrophus were compared from the viewpoints of nitrate removal efficiency and organic matter utilization. First, the effect of carbon source was investigated. Although nitrate reduction was observed in all strains under aerobic conditions, a change of carbon source considerably affected the denitrification ability. In the case of P. pantotrophus, nitrate and nitrite were completely removed in three days under sodium acetate or leucine as a carbon source. In the case of A. faecalis, sufficient nitrate removal was observed only when sodium acetate or ethanol was added. P. pantotrophus and A. faecalis showed a higher ability of nitrate removal than that of M. aerodenitrificans. Therefore, P. pantotrophus was selected in order to investigate the effects of concentration and repetitive addition of carbon. Sodium acetate was used as a sole carbon source. Nitrate was not reduced when the carbon concentration was below 500 mgC/L. However, when carbon source was added repeatedly, nitrate was reduced under 100 mgC/L after the optical density of the bacterium reached above 1.0. This result indicated that a high enough level of bacterial density was necessary to express aerobic denitrification activity. PMID:15566182

  5. Small sewage treatment system with an anaerobic-anoxic-aerobic combined biofilter.

    PubMed

    Park, S M; Jun, H B; Hong, S P; Kwon, J C

    2003-01-01

    The objective of this study was to investigate a small sewage treatment system that could improve nitrogen and BOD5 removal efficiency as well as generate less solid using an anaerobic-anoxic-aerobic biofiltration system. Wastewater temperature was in the range of 14-25 degrees C, and hydraulic residual times were 12 h for each reactor. The upflow anaerobic digester equipped with anoxic filter was fed with both raw sewage and recycled effluent from the aerobic filter to induce denitrification and solid reduction simultaneously. In the subsequent aerobic filter, residual organic carbon and ammonia might be oxidized and finally nitrate formed. In the anaerobic reactor, about 71% of influent TCOD was removed by sedimentation of the un-filterable COD at the recycle ratio of 300%. Another 20% of influent TCOD was removed in the anoxic filter by denitrification of the recycled nitrate. After 100 days operation, solid reduction and nitrification efficiency were about 30% and 95%, respectively. Overall removal efficiencies of COD and total nitrogen (T-N) were above 94% and 70% at the recycle ratio of 300%, respectively. Total wasted solid from the system after 100 days operation was about 316 g, which was only 44% of the solid generated from a controlled activated sludge system operated at sludge retention time of 8 days.

  6. Anxiety during respirator use: comparison of two respirator types.

    PubMed

    Wu, Samantha; Harber, Philip; Yun, David; Bansal, Siddharth; Li, Yuan; Santiago, Silverio

    2011-03-01

    Anxiety may interfere with proper respirator use. This study directly compares the effect of two types of respirators--elastomeric half-face mask with dual-cartridges (HFM) and N95 filtering facepiece--on anxiety levels. Twelve volunteers with normal or mildly impaired respiratory conditions performed a series of simulated work tasks using the HFM and N95 on different days. The State-Trait Anxiety Inventory (STAI) measured state anxiety (SA) before and during respirator use. STAI also measured trait anxiety (TA), a stable personal characteristic. The effect of the respirator was measured as the difference between SA pre-use and during use. Work with HFM was associated with an increase in SA (2.92 units, p < .01), whereas work with the N95 had no observed effect. Anxiety should be considered in the selection of the best respirator for a user. Impact on anxiety should be considered for respirator design and certification purposes, particularly if the device is to be widely used in workplace and community settings. PMID:21318920

  7. From breathing to respiration.

    PubMed

    Fitting, Jean-William

    2015-01-01

    The purpose of breathing remained an enigma for a long time. The Hippocratic school described breathing patterns but did not associate breathing with the lungs. Empedocles and Plato postulated that breathing was linked to the passage of air through pores of the skin. This was refuted by Aristotle who believed that the role of breathing was to cool the heart. In Alexandria, breakthroughs were accomplished in the anatomy and physiology of the respiratory system. Later, Galen proposed an accurate description of the respiratory muscles and the mechanics of breathing. However, his heart-lung model was hampered by the traditional view of two non-communicating vascular systems - veins and arteries. After a period of stagnation in the Middle Ages, knowledge progressed with the discovery of pulmonary circulation. The comprehension of the purpose of breathing progressed by steps thanks to Boyle and Mayow among others, and culminated with the contribution of Priestley and the discovery of oxygen by Lavoisier. Only then was breathing recognized as fulfilling the purpose of respiration, or gas exchange. A century later, a controversy emerged concerning the active or passive transfer of oxygen from alveoli to the blood. August and Marie Krogh settled the dispute, showing that passive diffusion was sufficient to meet the oxygen needs.

  8. From breathing to respiration.

    PubMed

    Fitting, Jean-William

    2015-01-01

    The purpose of breathing remained an enigma for a long time. The Hippocratic school described breathing patterns but did not associate breathing with the lungs. Empedocles and Plato postulated that breathing was linked to the passage of air through pores of the skin. This was refuted by Aristotle who believed that the role of breathing was to cool the heart. In Alexandria, breakthroughs were accomplished in the anatomy and physiology of the respiratory system. Later, Galen proposed an accurate description of the respiratory muscles and the mechanics of breathing. However, his heart-lung model was hampered by the traditional view of two non-communicating vascular systems - veins and arteries. After a period of stagnation in the Middle Ages, knowledge progressed with the discovery of pulmonary circulation. The comprehension of the purpose of breathing progressed by steps thanks to Boyle and Mayow among others, and culminated with the contribution of Priestley and the discovery of oxygen by Lavoisier. Only then was breathing recognized as fulfilling the purpose of respiration, or gas exchange. A century later, a controversy emerged concerning the active or passive transfer of oxygen from alveoli to the blood. August and Marie Krogh settled the dispute, showing that passive diffusion was sufficient to meet the oxygen needs. PMID:25532022

  9. Respiration in spiders (Araneae).

    PubMed

    Schmitz, Anke

    2016-05-01

    Spiders (Araneae) are unique regarding their respiratory system: they are the only animal group that breathe simultaneously with lungs and tracheae. Looking at the physiology of respiration the existence of tracheae plays an important role in spiders with a well-developed tracheal system. Other factors as sex, life time, type of prey capture and the high ability to gain energy anaerobically influence the resting and the active metabolic rate intensely. Most spiders have metabolic rates that are much lower than expected from body mass; but especially those with two pairs of lungs. Males normally have higher resting rates than females; spiders that are less evolved and possess a cribellum have lower metabolic rates than higher evolved species. Freely hunting spiders show a higher energy turnover than spiders hunting with a web. Spiders that live longer than 1 year will have lower metabolic rates than those species that die after 1 year in which development and reproduction must be completed. Lower temperatures and starvation, which most spiders can cope with, will decrease the metabolic rate as well. PMID:26820263

  10. Denitrification in coastal Louisiana: A spatial assessment and research needs

    NASA Astrophysics Data System (ADS)

    Rivera-Monroy, Victor H.; Lenaker, Peter; Twilley, Robert R.; Delaune, Ronald D.; Lindau, Charles W.; Nuttle, William; Habib, Emad; Fulweiler, Robinson W.; Castañeda-Moya, Edward

    2010-04-01

    By transforming fixed nitrogen (N) into nitrogen gas, the biochemical processes that support denitrification provide a function critical to maintaining the integrity of ecosystems subjected to increased loading of N from anthropogenic sources. The Louisiana coastal region receives high nitrate (NO 3-) concentrations (> 100 µM) from the Mississippi-Ohio-Missouri River Basin and is also an area undergoing high rates of wetland loss. Ongoing and anticipated changes in the Louisiana coastal region promise to alter biogeochemical cycles including the net rate of denitrification by ecosystems. Projecting what these changes could mean for coastal water quality and natural resources requires an understanding of the magnitude and patterns of variation in denitrification rates and their connection to estuarine water quality at large temporal and spatial scales under current conditions. We compile and review denitrification rates reported in 32 studies conducted in a variety of habitats across coastal Louisiana during the period 1981- 2008. The acetylene inhibition and 15N flux were the preferred techniques (95%); most of the studies used sediment slurries rather than intact sediment cores. There are no estimates of denitrification rates using the N 2/Ar ratio and isotope pairing techniques, which address some of the problems and limitations of the acetylene inhibition and 15N flux techniques. These studies have shown that sediments from estuaries, lakes, marshes, forested wetlands, and the coastal shelf region are capable of high potential denitrification rates when exposed to high NO 3- concentrations (> 100 µM). Maximum potential denitrification rates in experimental and natural settings can reach values > 2500 µmol m 2 h - 1 . The lack of contemporary studies to understand the interactions among critical nitrogen transformations (e.g., organic matter mineralization, immobilization, aquatic plant assimilation, nitrification, nitrogen fixation, dissimilatory nitrate

  11. Denitrification and a nitrogen budget of created riparian wetlands.

    PubMed

    Batson, Jacqulyn A; Mander, Ulo; Mitsch, William J

    2012-01-01

    Riparian wetland creation and restoration have been proposed to mediate nitrate-nitrogen (NO-N) pollution from nonpoint agricultural runoff. Denitrification by anaerobic microbial communities in wetland soils is believed to be one of the main sinks for NO-N as it flows through wetlands. Denitrification rates were quantified using an in situ acetylene inhibition technique at 12 locations in three wetland/riverine sites at the Olentangy River Wetland Research Park, Columbus, Ohio for 1 yr. Sites included two created flow-through experimental wetlands and one bottomland forest/river-edge site. Points were spatially distributed at inflows, center, and outflows of the two wetlands to include permanently flooded open water, intermittently flooded transitions, and upland. Annual denitrification rates (median [mean]) were significantly higher ( < 0.001) in permanently flooded zones of the wetlands (266 [415] μg NO-N m h) than in shallower transition zones (58 [37.5] μg NO-N m h). Median wetland transition zone denitrification rates did not differ significantly ( ≥ 0.05) from riverside or upland sites. Denitrification rates peaked in spring; for the months of April through June, median denitrification rates ranged from 240 to 1010 μg NO-N m h in the permanently flooded zones. A N mass balance analysis showed that surface water flux of N was reduced by 57% as water flowed through the wetland, but only about 3.5% of the N inflow was permanently removed through denitrification. Most N was probably lost through groundwater seepage. Comparison with denitrification rates measured previously in these wetlands suggests that these rates have remained steady over the past 4 to 5 yr.

  12. Impact of intermittent aerations on leachate quality and greenhouse gas reduction in the aerobic-anaerobic landfill method.

    PubMed

    Nag, Mitali; Shimaoka, Takayuki; Komiya, Teppei

    2016-09-01

    The aerobic-anaerobic landfill method (AALM) is a novel approach in solid waste management that could shorten the landfill post-closure period and minimize the environmental loads. In this study, the aerobic-anaerobic landfill method was evaluated by using intermittent aeration. In addition, the nitrification-denitrification process was assessed as a means of reducing the emission of greenhouse gases (GHGs) and improving the leachate quality during the degradation of the organic solid waste. The leachate quality and the gas composition in each of the reactors were measured during the experimental period (408days). The aeration process entailed the injection of air into plexiglass cylinders (200cm height×10 cm diameter), filled with fresh organic solid waste collected from a composting plant. Different aeration routines were applied, namely, continuous aeration (aerobic reactor A), aeration for three days/week (aerobic-anaerobic reactor B), aeration for 6h/day (aerobic-anaerobic reactor C), and no aeration (non-aerated reactor D). It was found that aerobic reactor A produced the best results in terms of reduction of GHGs and improvement of the leachate quality. The aerobic-anaerobic reactor C was found to be more effective than reactor B in respect of both the emission of GHGs and the leachate quality; moreover, compared with aerobic reactor A, energy costs were reduced by operating this reactor. The transition period phenomenon was investigated during an intensive seven-day experiment conducted on the discharged leachate obtained from aerobic-anaerobic reactors B and C. The experiment concerned the differences in the composition of the gas during the aeration and the non-aeration periods. It was found that the transition period between the aeration and non-aeration cycles, which followed the simultaneous nitrification-denitrification had a considerable effect on the leachate quality of both the reactors. The results indicated that AALM has the potential to reduce

  13. Impact of intermittent aerations on leachate quality and greenhouse gas reduction in the aerobic-anaerobic landfill method.

    PubMed

    Nag, Mitali; Shimaoka, Takayuki; Komiya, Teppei

    2016-09-01

    The aerobic-anaerobic landfill method (AALM) is a novel approach in solid waste management that could shorten the landfill post-closure period and minimize the environmental loads. In this study, the aerobic-anaerobic landfill method was evaluated by using intermittent aeration. In addition, the nitrification-denitrification process was assessed as a means of reducing the emission of greenhouse gases (GHGs) and improving the leachate quality during the degradation of the organic solid waste. The leachate quality and the gas composition in each of the reactors were measured during the experimental period (408days). The aeration process entailed the injection of air into plexiglass cylinders (200cm height×10 cm diameter), filled with fresh organic solid waste collected from a composting plant. Different aeration routines were applied, namely, continuous aeration (aerobic reactor A), aeration for three days/week (aerobic-anaerobic reactor B), aeration for 6h/day (aerobic-anaerobic reactor C), and no aeration (non-aerated reactor D). It was found that aerobic reactor A produced the best results in terms of reduction of GHGs and improvement of the leachate quality. The aerobic-anaerobic reactor C was found to be more effective than reactor B in respect of both the emission of GHGs and the leachate quality; moreover, compared with aerobic reactor A, energy costs were reduced by operating this reactor. The transition period phenomenon was investigated during an intensive seven-day experiment conducted on the discharged leachate obtained from aerobic-anaerobic reactors B and C. The experiment concerned the differences in the composition of the gas during the aeration and the non-aeration periods. It was found that the transition period between the aeration and non-aeration cycles, which followed the simultaneous nitrification-denitrification had a considerable effect on the leachate quality of both the reactors. The results indicated that AALM has the potential to reduce

  14. Characterization of aerobic ethanol productions in a computerized auxostat

    SciTech Connect

    Fraleigh, S.P.

    1989-01-01

    For many valuable bioproducts high productivity is associated with rapid growth. However, most continuous microbial cultures become unstable when the dilution rate is fixed near the value for maximum growth rate. The auxostat culture technique employs feedback control of a nutrient or metabolite to stabilize the biomass at its maximum potential growth rate. An auxostat device is therefore ideal for study of bioprocesses involving the overproduction of primary metabolites such as ethanol. Oxidoreductive transformations involving ethanol are utilized by Saccharomyces yeasts when normal respiration cannot satisfy energy needs. When rapid growth or other stress creates oxidoreductive conditions in aerobic Saccharomyces cultures, very high specific ethanol formation rates are established and biomass yield drops to levels more typical of anaerobic fermentation. Although the physiology is favorable, the potential for large-scale aerobic ethanol processes to compete with traditional anaerobic fermentations has not previously been assessed. In this study, a fully computerized auxostat device was constructed and used to characterize the specific and volumetric aerobic ethanol productivity of the yeast Saccharomyces cerevisiae. To divert substrate away from biomass and into product formation, aerobic cultures were stressed with variations of ionic balance (via extreme K{sup +} and H{sup +} setpoints) in the auxostat device. During growth with limiting K{sup +} concentrations, the goal of very low biomass yield was attained but the rate of ethanol production was poor. However, with excess K{sup +} the volumetric productivity reached 6.1 g/I,-h, a value that is comparable to optimized, continuous anaerobic cultures.

  15. Denitrification in Marl and Peat Sediments in the Florida Everglades

    PubMed Central

    Gordon, A. S.; Cooper, W. J.; Scheidt, D. J.

    1986-01-01

    The potential for denitrification in marl and peat sediments in the Shark River Slough in the Everglades National Park was determined by the acetylene blockage assay. The influence of nitrate concentration on denitrification rate and N2O yield from added nitrate was examined. The effects of added glucose and phosphate and of temperature on the denitrification potential were determined. The sediments readily denitrified added nitrate. N2O was released from the sediments both with and without added acetylene. The marl sediments had higher rates than the peat on every date sampled. Denitrification was nitrate limited; however, the yields of N2O amounted to only 10 to 34% of the added nitrate when 100 μM nitrate was added. On the basis of measured increases in ammonium concentration, it appears that the balance of added nitrate may be converted to ammonium in the marl sediment. The sediment temperature at the time of sampling greatly influenced the denitrification potential (15-fold rate change) at the marl site, indicating that either the number or the specific activity of the denitrifiers changed in response to temperature fluctuations (9 to 25°C) in the sediment. It is apparent from this study that denitrification in Everglades sediments is not an effective means of removing excess nitrogen which may be introduced as nitrate into the ecosystem with supply water from the South Florida watershed and that sporadic addition of nitrate-rich water may lead to nitrous oxide release from these wetlands. PMID:16347228

  16. Denitrification in an Urban Greenbelt: Contrasting Aquatic and Terrestrial Patches

    NASA Astrophysics Data System (ADS)

    Roach, W. J.; Grimm, N. B.

    2005-05-01

    The Indian Bend Wash flood-control project relies on a greenbelt to safely convey floods through Scottsdale, AZ. A chain of shallow artificially maintained lakes sitting in a larger, protected floodplain of irrigated turf grass characterizes the greenbelt. We conducted a series of experiments exploring how the creation of novel patch types affected denitrification in the wash. DEA analyses on sediments collected from eight lake and six stream segments as well as soil samples from eight floodplain transects demonstrated that mass-specific potential denitrification rates were significantly higher in lakes than in streams or floodplains. Nutrient limitation bioassays revealed that NO3-N limited denitrification in lake sediments while floodplain soils were limited by the availability anaerobic conditions created by water additions. Although rain events are rare in the desert, irrigation is common and we conclude that annual denitrification in the floodplain can be substantial. Because lake water NO3-N concentrations often exceed 1 mg/L, the finding that NO3-N limited denitrification in the sediments was surprising. However, further experiments using intact cores demonstrated that it was not so much the availability of NO3-N in the overlying water as the rate the nitrate diffused into the sediments that limited denitrification in the lakes.

  17. A Network Biology Approach to Denitrification in Pseudomonas aeruginosa

    PubMed Central

    Arat, Seda; Bullerjahn, George S.; Laubenbacher, Reinhard

    2015-01-01

    Pseudomonas aeruginosa is a metabolically flexible member of the Gammaproteobacteria. Under anaerobic conditions and the presence of nitrate, P. aeruginosa can perform (complete) denitrification, a respiratory process of dissimilatory nitrate reduction to nitrogen gas via nitrite (NO2), nitric oxide (NO) and nitrous oxide (N2O). This study focuses on understanding the influence of environmental conditions on bacterial denitrification performance, using a mathematical model of a metabolic network in P. aeruginosa. To our knowledge, this is the first mathematical model of denitrification for this bacterium. Analysis of the long-term behavior of the network under changing concentration levels of oxygen (O2), nitrate (NO3), and phosphate (PO4) suggests that PO4 concentration strongly affects denitrification performance. The model provides three predictions on denitrification activity of P. aeruginosa under various environmental conditions, and these predictions are either experimentally validated or supported by pertinent biological literature. One motivation for this study is to capture the effect of PO4 on a denitrification metabolic network of P. aeruginosa in order to shed light on mechanisms for greenhouse gas N2O accumulation during seasonal oxygen depletion in aquatic environments such as Lake Erie (Laurentian Great Lakes, USA). Simulating the microbial production of greenhouse gases in anaerobic aquatic systems such as Lake Erie allows a deeper understanding of the contributing environmental effects that will inform studies on, and remediation strategies for, other hypoxic sites worldwide. PMID:25706405

  18. Denitrification likely catalyzed by endobionts in an allogromiid foraminifer

    PubMed Central

    Bernhard, Joan M; Edgcomb, Virginia P; Casciotti, Karen L; McIlvin, Matthew R; Beaudoin, David J

    2012-01-01

    Nitrogen can be a limiting macronutrient for carbon uptake by the marine biosphere. The process of denitrification (conversion of nitrate to gaseous compounds, including N2 (nitrogen gas)) removes bioavailable nitrogen, particularly in marine sediments, making it a key factor in the marine nitrogen budget. Benthic foraminifera reportedly perform complete denitrification, a process previously considered nearly exclusively performed by bacteria and archaea. If the ability to denitrify is widespread among these diverse and abundant protists, a paradigm shift is required for biogeochemistry and marine microbial ecology. However, to date, the mechanisms of foraminiferal denitrification are unclear, and it is possible that the ability to perform complete denitrification is because of the symbiont metabolism in some foraminiferal species. Using sequence analysis and GeneFISH, we show that for a symbiont-bearing foraminifer, the potential for denitrification resides in the endobionts. Results also identify the endobionts as denitrifying pseudomonads and show that the allogromiid accumulates nitrate intracellularly, presumably for use in denitrification. Endobionts have been observed within many foraminiferal species, and in the case of associations with denitrifying bacteria, may provide fitness for survival in anoxic conditions. These associations may have been a driving force for early foraminiferal diversification, which is thought to have occurred in the Neoproterozoic era when anoxia was widespread. PMID:22134648

  19. Denitrification likely catalyzed by endobionts in an allogromiid foraminifer.

    PubMed

    Bernhard, Joan M; Edgcomb, Virginia P; Casciotti, Karen L; McIlvin, Matthew R; Beaudoin, David J

    2012-05-01

    Nitrogen can be a limiting macronutrient for carbon uptake by the marine biosphere. The process of denitrification (conversion of nitrate to gaseous compounds, including N(2) (nitrogen gas)) removes bioavailable nitrogen, particularly in marine sediments, making it a key factor in the marine nitrogen budget. Benthic foraminifera reportedly perform complete denitrification, a process previously considered nearly exclusively performed by bacteria and archaea. If the ability to denitrify is widespread among these diverse and abundant protists, a paradigm shift is required for biogeochemistry and marine microbial ecology. However, to date, the mechanisms of foraminiferal denitrification are unclear, and it is possible that the ability to perform complete denitrification is because of the symbiont metabolism in some foraminiferal species. Using sequence analysis and GeneFISH, we show that for a symbiont-bearing foraminifer, the potential for denitrification resides in the endobionts. Results also identify the endobionts as denitrifying pseudomonads and show that the allogromiid accumulates nitrate intracellularly, presumably for use in denitrification. Endobionts have been observed within many foraminiferal species, and in the case of associations with denitrifying bacteria, may provide fitness for survival in anoxic conditions. These associations may have been a driving force for early foraminiferal diversification, which is thought to have occurred in the Neoproterozoic era when anoxia was widespread.

  20. Linking denitrification and infiltration rates during managed groundwater recharge.

    PubMed

    Schmidt, Calla M; Fisher, Andrew T; Racz, Andrew J; Lockwood, Brian S; Huertos, Marc Los

    2011-11-15

    We quantify relations between rates of in situ denitrification and saturated infiltration through shallow, sandy soils during managed groundwater recharge. We used thermal methods to determine time series of point-specific flow rates, and chemical and isotopic methods to assess denitrification progress. Zero order denitrification rates between 3 and 300 μmol L(-1) d(-1) were measured during infiltration. Denitrification was not detected at times and locations where the infiltration rate exceeded a threshold of 0.7 ± 0.2 m d(-1). Pore water profiles of oxygen and nitrate concentration indicated a deepening of the redoxocline at high flow rates, which reduced the thickness of the zone favorable for denitrification. Denitrification rates were positively correlated with infiltration rates below the infiltration threshold, suggesting that for a given set of sediment characteristics, there is an optimal infiltration rate for achieving maximum nitrate load reduction and improvements to water supply during managed groundwater recharge. The extent to which results from this study may be extended to other managed and natural hydrologic settings remains to be determined, but the approach taken in this study should be broadly applicable, and provides a quantitative link between shallow hydrologic and biogeochemical processes.

  1. A network biology approach to denitrification in Pseudomonas aeruginosa

    DOE PAGES

    Arat, Seda; Bullerjahn, George S.; Laubenbacher, Reinhard

    2015-02-23

    Pseudomonas aeruginosa is a metabolically flexible member of the Gammaproteobacteria. Under anaerobic conditions and the presence of nitrate, P. aeruginosa can perform (complete) denitrification, a respiratory process of dissimilatory nitrate reduction to nitrogen gas via nitrite (NO₂), nitric oxide (NO) and nitrous oxide (N₂O). This study focuses on understanding the influence of environmental conditions on bacterial denitrification performance, using a mathematical model of a metabolic network in P. aeruginosa. To our knowledge, this is the first mathematical model of denitrification for this bacterium. Analysis of the long-term behavior of the network under changing concentration levels of oxygen (O₂), nitrate (NO₃),more » and phosphate (PO₄) suggests that PO₄ concentration strongly affects denitrification performance. The model provides three predictions on denitrification activity of P. aeruginosa under various environmental conditions, and these predictions are either experimentally validated or supported by pertinent biological literature. One motivation for this study is to capture the effect of PO₄ on a denitrification metabolic network of P. aeruginosa in order to shed light on mechanisms for greenhouse gas N₂O accumulation during seasonal oxygen depletion in aquatic environments such as Lake Erie (Laurentian Great Lakes, USA). Simulating the microbial production of greenhouse gases in anaerobic aquatic systems such as Lake Erie allows a deeper understanding of the contributing environmental effects that will inform studies on, and remediation strategies for, other hypoxic sites worldwide.« less

  2. The environmental controls that govern the end product of bacterial nitrate respiration

    SciTech Connect

    Kraft, Beate; Tegetmeyer, Halina E.; Sharma, Ritin; Klotz, Martin G.; Ferdelman, Timothy G.; Hettich, Robert L.; Geelhoed, Jeanine S.; Strous, Marc

    2014-08-08

    In the biogeochemical nitrogen cycle, microbial respiration processes compete for nitrate as an electron acceptor. Denitrification converts nitrate into nitrogenous gas and thus removes fixed nitrogen from the biosphere, whereas ammonification converts nitrate into ammonium, which is directly reusable by primary producers. In this paper, we combined multiple parallel long-term incubations of marine microbial nitrate-respiring communities with isotope labeling and metagenomics to unravel how specific environmental conditions select for either process. Microbial generation time, supply of nitrite relative to nitrate, and the carbon/nitrogen ratio were identified as key environmental controls that determine whether nitrite will be reduced to nitrogenous gas or ammonium. Finally, our results define the microbial ecophysiology of a biogeochemical feedback loop that is key to global change, eutrophication, and wastewater treatment.

  3. The environmental controls that govern the end product of bacterial nitrate respiration

    DOE PAGES

    Kraft, Beate; Tegetmeyer, Halina E.; Sharma, Ritin; Klotz, Martin G.; Ferdelman, Timothy G.; Hettich, Robert L.; Geelhoed, Jeanine S.; Strous, Marc

    2014-08-08

    In the biogeochemical nitrogen cycle, microbial respiration processes compete for nitrate as an electron acceptor. Denitrification converts nitrate into nitrogenous gas and thus removes fixed nitrogen from the biosphere, whereas ammonification converts nitrate into ammonium, which is directly reusable by primary producers. In this paper, we combined multiple parallel long-term incubations of marine microbial nitrate-respiring communities with isotope labeling and metagenomics to unravel how specific environmental conditions select for either process. Microbial generation time, supply of nitrite relative to nitrate, and the carbon/nitrogen ratio were identified as key environmental controls that determine whether nitrite will be reduced to nitrogenous gasmore » or ammonium. Finally, our results define the microbial ecophysiology of a biogeochemical feedback loop that is key to global change, eutrophication, and wastewater treatment.« less

  4. Respiration in heterotrophic unicellular eukaryotic organisms.

    PubMed

    Fenchel, Tom

    2014-08-01

    Surface:volume quotient, mitochondrial volume fraction, and their distribution within cells were investigated and oxygen gradients within and outside cells were modelled. Cell surface increases allometrically with cell size. Mitochondrial volume fraction is invariant with cell size and constitutes about 10% and mitochondria are predominantly found close to the outer membrane. The results predict that for small and medium sized protozoa maximum respiration rates should be proportional to cell volume (scaling exponent ≈1) and access to intracellular O2 is not limiting except at very low ambient O2-tensions. Available data do not contradict this and some evidence supports this interpretation. Cell size is ultimately limited because an increasing fraction of the mitochondria becomes exposed to near anoxic conditions with increasing cell size. The fact that mitochondria cluster close to the cell surface and the allometric change in cell shape with increasing cell size alleviates the limitation of aerobic life at low ambient O2-tension and for large cell size.

  5. Aerobic landfill bioreactor

    DOEpatents

    Hudgins, Mark P; Bessette, Bernard J; March, John C; McComb, Scott T.

    2002-01-01

    The present invention includes a system of decomposing municipal solid waste (MSW) within a landfill by converting the landfill to aerobic degradation in the following manner: (1) injecting air via the landfill leachate collection system (2) injecting air via vertical air injection wells installed within the waste mass; (3) applying leachate to the waste mass using a pressurized drip irrigation system; (4) allowing landfill gases to vent; and (5) adjusting air injection and recirculated leachate to achieve a 40% to 60% moisture level and a temperature between 120.degree. F. and 140.degree. F. in steady state.

  6. Aerobic landfill bioreactor

    DOEpatents

    Hudgins, Mark P; Bessette, Bernard J; March, John; McComb, Scott T.

    2000-01-01

    The present invention includes a method of decomposing municipal solid waste (MSW) within a landfill by converting the landfill to aerobic degradation in the following manner: (1) injecting air via the landfill leachate collection system (2) injecting air via vertical air injection wells installed within the waste mass; (3) applying leachate to the waste mass using a pressurized drip irrigation system; (4) allowing landfill gases to vent; and (5) adjusting air injection and recirculated leachate to achieve a 40% to 60% moisture level and a temperature between 120.degree. F. and 140.degree. F. in steady state.

  7. Aerobic landfill bioreactor

    SciTech Connect

    Hudgins, M.P.; Bessette, B.J.; March, J.; McComb, S.T.

    2000-02-15

    The present invention includes a method of decomposing municipal solid waste (MSW) within a landfill by converting the landfill to aerobic degradation in the following manner: (1) injecting air via the landfill leachate collection system (2) injecting air via vertical air injection wells installed within the waste mass; (3) applying leachate to the waste mass using a pressurized drip irrigation system; (4) allowing landfill gases to vent; and (5) adjusting air injection and recirculated leachate to achieve a 40% to 60% moisture level and a temperature between 120 F and 140 F in steady state.

  8. Sulfur-based denitrification: Effect of biofilm development on denitrification fluxes.

    PubMed

    Wang, Yue; Bott, Charles; Nerenberg, Robert

    2016-09-01

    Elemental sulfur (S(o)) can serve as an electron donor for denitrification. However, the mechanisms and rates of S(o)-based denitrification, which depend on a biofilm development on a solid S(o) surface, are not well understood. We used completely-mixed reactors packed with S(o) chips to systematically explore the behavior of S(o)-based denitrification as a function of the bulk nitrate (NO3(-)) concentration and biofilm development. High-purity (99.5%) and agricultural-grade (90% purity) S(o) chips were tested to explore differences in performance. NO3(-) fluxes followed a Monod-type relationship with the bulk NO3(-) concentration. For high-purity S(o), the maximum NO3(-) flux increased from 0.4 gN/m(2)-d at 21 days to 0.9 g N/m(2)-d at around 100 days, but then decreased to 0.65 gN/m(2)-d at 161 days. The apparent (extant) half-saturation constant for NO3(-) KSapp, based on the bulk NO3(-) concentration and NO3(-) fluxes into the biofilm, increased from 0.1 mgN/L at 21 days to 0.8 mgN/L at 161 days, reflecting the increasing mass transfer resistance as the biofilm thickness increased. Nitrite (NO2(-)) accumulation became significant at bulk NO3(-) concentration above 0.2 mgN/L. The behavior of the agricultural-grade S(o) was very similar to the high-purity S(o). The kinetic behavior of S(o)-based denitrification was consistent with substrate counter-diffusion, where the soluble sulfur species diffuse from the S(o) particle into the base of the biofilm, while NO3(-) diffuses into the biofilm from the bulk. Initially, the fluxes were low due to biomass limitation (thin biofilms). As the biofilm thickness increased with time, the fluxes first increased, stabilized, and then decreased. The decrease was probably due to increasing diffusional resistance in the thick biofilm. Results suggest that fluxes comparable to heterotrophic biofilm processes can be achieved, but careful management of biofilm accumulation is important to maintain high fluxes. PMID:27187050

  9. Low-Impact Aerobics: Better than Traditional Aerobic Dance?

    ERIC Educational Resources Information Center

    Koszuta, Laurie Einstein

    1986-01-01

    A form of dance exercise called low-impact aerobics is being touted as a misery-free form of aerobic dance. Because this activity is relatively new, the exact kinds and frequencies of injuries are not known and the fitness benefits have not been examined. (MT)

  10. Biogas desulfurization using autotrophic denitrification process.

    PubMed

    Bayrakdar, Alper; Tilahun, Ebrahim; Calli, Baris

    2016-01-01

    The aim of this study was to evaluate the performance of an autotrophic denitrification process for desulfurization of biogas produced from a chicken manure digester. A laboratory scale upflow fixed bed reactor (UFBR) was operated for 105 days and fed with sodium sulfide or H2S scrubbed from the biogas and nitrate as electron donor and acceptor, respectively. The S/N ratio (2.5 mol/mol) of the feed solution was kept constant throughout the study. When the UFBR was fed with sodium sulfide solution with an influent pH of 7.7, about 95 % sulfide and 90 % nitrate removal efficiencies were achieved. However, the inlet of the UFBR was clogged several times due to the accumulation of biologically produced elemental sulfur particles and the clogging resulted in operational problems. When the UFBR was fed with the H2S absorbed from the biogas and operated with an influent pH of 8-9, around 98 % sulfide and 97 % nitrate removal efficiencies were obtained. In this way, above 95 % of the H2S in the biogas was removed as elemental sulfur and the reactor effluent was reused as scrubbing liquid without any clogging problem.

  11. Zooming in on aquatic denitrification hot spots

    NASA Astrophysics Data System (ADS)

    Schultz, Colin

    2011-06-01

    Inorganic nitrogen is an important resource for marine and aquatic ecosystems, acting as a fertilizer for phytoplankton and aquatic plants. When nitrogen concentrations soar, algae blooms can occur. Subsequently, when the algae blooms die, their decomposition can consume most of the available dissolved oxygen, negatively affecting the ecosystem as a whole. Creeks and streams act as strong controls, regulating downstream nitrogen concentrations, and researchers have been zooming in on hyporheic zones—zones where water flows through the sediment alongside the surface water—as possible hot spots of activity in the nitrogen cycle. Using a stable isotope tracer, Zarnetske et al. tracked the evolution of a nitrogen addition as it flowed through a heavily instrumented gravel bar in Drift Creek, in Oregon. The researchers found that the gravel bar could act as either a source or a sink of inorganic nitrogen, depending on how long it took for the water to make its way through the bar. When the creek water took longer to pass through the hyporheic zone, nitrogen levels were reduced significantly through denitrification, while any water that traveled quickly could have its inorganic nitrogen concentrations increased by nitrification. The authors note that a context-dependent effect of individual hyporheic zones on inorganic nitrogen concentrations could have important implications for attempts to estimate the effects of a watershed on the nitrogen cycle. (Journal of Geophysical Research-Biogeosciences, doi:10.1029/ 2010JG001356, 2011)

  12. Molecular Characterization of Bacterial Respiration on Minerals

    SciTech Connect

    Blake, Robert C.

    2013-04-26

    The overall aim of this project was to contribute to our fundamental understanding of proteins and biological processes under extreme environmental conditions. We sought to define the biochemical and physiological mechanisms that underlie biodegradative and other cellular processes in normal, extreme, and engineered environments. Toward that end, we sought to understand the substrate oxidation pathways, the electron transport mechanisms, and the modes of energy conservation employed during respiration by bacteria on soluble iron and insoluble sulfide minerals. In accordance with these general aims, the specific aims were two-fold: To identify, separate, and characterize the extracellular biomolecules necessary for aerobic respiration on iron under strongly acidic conditions; and to elucidate the molecular principles whereby these bacteria recognize and adhere to their insoluble mineral substrates under harsh environmental conditions. The results of these studies were described in a total of nineteen manuscripts. Highlights include the following: 1. The complete genome of Acidithiobacillus ferrooxidans ATCC 23270 (type strain) was sequenced in collaboration with the DOE Joint Genome Institute; 2. Genomic and mass spectrometry-based proteomic methods were used to evaluate gene expression and in situ microbial activity in a low-complexity natural acid mine drainage microbial biofilm community. This was the first effort to successfully analyze a natural community using these techniques; 3. Detailed functional and structural studies were conducted on rusticyanin, an acid-stable electron transfer protein purified from cell-free extracts of At. ferrooxidans. The three-dimensional structure of reduced rusticyanin was determined from a combination of homonuclear proton and heteronuclear 15N- and 13C-edited NMR spectra. Concomitantly, the three-dimensional structure of oxidized rusticyanin was determined by X-ray crystallography to a resolution of 1.9 A by multiwavelength

  13. Physiological response to ''pressure-demand'' respirator wear

    SciTech Connect

    Raven, P.B.; Bradley, O.; Rohm-Young, D.; McClure, F.L.; Skaggs, B.

    1982-07-01

    This investigation determined cardiorespiratory responses of subjects with normal lung function and exercise tolerance and compared them with subjects with moderate impairment of lung function and exercise tolerance. The respirator was an air-line full-face mask (MSA-Ultravue) ''pressure-demand'' breathing type equipped with an inspiratory resistance of 85 mmH/sub 2/0 at 85 L/min air flow. This resistance was operable in conjunction with the fixed 25 mmH/sub 2/O inspiratory and expiratory resistance required to pressurize the face piece. Physiologically and subjectively the response of the normal and moderately impaired subjects to respirator wear during rest, 35%, 50% and 80% of their maximal aerobic capacity (VO/sub 2//sub max/) were not different. However, the pressure swings inside the face piece exceeded 24 cm H/sub 2/O and resulted in 50% of the subjects being unable to finish 10 minutes of work at 80% VO/sub 2//sub max/. The greater the ventilatory demand placed upon the respirator due to increasing workload, the more like a ''demand'' system pressure-flow response the ''pressure-demand'' system produced. Hence, the concept of increased protection and reduced inspiratory resistance as a result of pressurizing the facepiece during heavy work is seriously questioned.

  14. Assessment of Aerobic and Respiratory Growth in the Lactobacillus casei Group

    PubMed Central

    Zotta, Teresa; Ricciardi, Annamaria; Ianniello, Rocco G.; Parente, Eugenio; Reale, Anna; Rossi, Franca; Iacumin, Lucilla; Comi, Giuseppe; Coppola, Raffaele

    2014-01-01

    One hundred eighty four strains belonging to the species Lactobacillus casei, L. paracasei and L. rhamnosus were screened for their ability to grow under aerobic conditions, in media containing heme and menaquinone and/or compounds generating reactive oxygen species (ROS), in order to identify respiratory and oxygen-tolerant phenotypes. Most strains were able to cope with aerobic conditions and for many strains aerobic growth and heme or heme/menaquinone supplementation increased biomass production compared to anaerobic cultivation. Only four L. casei strains showed a catalase-like activity under anaerobic, aerobic and respiratory conditions and were able to survive in presence of H2O2 (1 mM). Almost all L. casei and L. paracasei strains tolerated menadione (0.2 mM) and most tolerated pyrogallol (50 mM), while L. rhamnosus was usually resistant only to the latter compound. This is the first study in which an extensive screening of oxygen and oxidative stress tolerance of members of the L. casei group has been carried out. Results allowed the selection of strains showing the typical traits of aerobic and respiratory metabolism (increased pH and biomass under aerobic or respiratory conditions) and unique oxidative stress response properties. Aerobic growth and respiration may confer technological and physiological advantages in the L. casei group and oxygen-tolerant phenotypes could be exploited in several food industry applications. PMID:24918811

  15. Using the combined bioelectrochemical and sulfur autotrophic denitrification system for groundwater denitrification.

    PubMed

    Wan, Dongjin; Liu, Huijuan; Qu, Jiuhui; Lei, Pengju; Xiao, Shuhu; Hou, Yining

    2009-01-01

    A combined bioelectrochemical and sulfur autotrophic denitrification system (CBSAD) was evaluated to treat a groundwater with nitrate contamination (20.9-22.0mgNO(3)(-)-N/L). The reactor was operated continuously for several months with groundwater to maximize treatment efficiency under different hydraulic retention times (HRT) and electric currents. The denitrification rate of sulfur autotrophic part followed a half-order kinetics model. Moreover, the removal efficiency of bioelectrochemical part depended on the electric current. The reactor could be operated efficiently at the HRT ranged from 4.2 to 2.1h (corresponding nitrogen volume-loading rates varied from 0.12 to 0.24 kg N/m(3)d; and optimum current ranged from 30 to 1000 mA), and the NO(3)(-)-N removal rate ranged from 95% to 100% without NO(3)(-)-N accumulation. The pH of effluent was satisfactorily adjusted by bioelectrochemical part, and the sulfate concentration of effluent was lower than 250 mg/L, meeting the drinking water standard of China EPA.

  16. Denitrification in cypress swamp within the Atchafalaya River Basin, Louisiana.

    PubMed

    Lindau, C W; Delaune, R D; Scaroni, A E; Nyman, J A

    2008-01-01

    Nitrogen has been implicated as a major cause of hypoxia in shallow water along the Louisiana/Texas, USA coasts. Excess nitrogen (mainly nitrate) from Mississippi and Atchafalaya River drainage basins may drive the onset and duration of hypoxia in the northern Gulf of Mexico. Restoring and enhancing denitrification have been proposed to reduce and control coastal hypoxia and improve water quality in the Mississippi River Basin. Sediments were collected from six baldcypress restoration sites within the Atchafalaya River Basin, Louisiana, USA. The acetylene blockage technique was used to measure background and potential sediment denitrification rates. Denitrification fluxes were measured before nitrate addition (background rates) and after nitrate addition of 100mgNl(-1) (potential denitrification) at three seasonal temperatures. Background denitrification was low across all cypress swamp sites ranging from 0.9 to 8.8, 0.6 to 28.5 and 8.8 to 47.5g N evolved ha(-1)d(-1) at water/sediment column temperatures of 8, 22 and 30 degrees C, respectively. After nitrate addition, temperature had a significant effect on sediment denitrification potential. Maximum rates measured at 8, 22 and 30 degrees C were approximately 250-260, 550 and 970gNha(-1)d(-1), respectively. Most of the added nitrate in water columns, incubated at 8 degrees C, was removed after 65d compared to 32d and 17d at 22 and 30 degrees C, respectively. These results indicate cypress swamps have the potential to assimilate and process elevated levels of floodwater nitrate with denitrification being a major removal mechanism.

  17. Aerobic Fitness and School Children.

    ERIC Educational Resources Information Center

    Hinkle, J. Scott

    1997-01-01

    Provides school counselors with information on aerobic exercise (specifically running) and the psychological, behavioral, and physical benefits children obtained by participating in fitness programs. Recommends collaboration between school counselors and physical education teachers and gives a preliminary discussion of aerobic running and its…

  18. Aerobic Fitness and School Children.

    ERIC Educational Resources Information Center

    Hinkle, J. Scott

    1992-01-01

    Provides school counselors with information regarding aerobic exercise (specifically running), and the psychological, behavioral, and physical benefits children obtain by participating in fitness programs. Presents methods of collaboration between school counselors and physical education teachers. Offers preliminary discussion of aerobic running…

  19. Exercise, Animal Aerobics, and Interpretation?

    ERIC Educational Resources Information Center

    Oliver, Valerie

    1996-01-01

    Describes an aerobic activity set to music for children that mimics animal movements. Example exercises include walking like a penguin or jumping like a cricket. Stresses basic aerobic principles and designing the program at the level of children's motor skills. Benefits include reaching people who normally don't visit nature centers, and bridging…

  20. [Optimization of aerobic/anaerobic subsurface flow constructed wetlands].

    PubMed

    Li, Feng-Min; Shan, Shi; Li, Yuan-Yuan; Li, Yang; Wang, Zheng-Yu

    2012-02-01

    Previous studies showed that setting aerobic and anaerobic paragraph segments in the subsurface constructed wetlands (SFCWs) can improve the COD, NH4(+)-N, and TN removal rate, whereas the oxygen enrichment environment which produced by the artificial aeration could restrain the NO3(-)-N and NO2(-)-N removal process, and to a certain extent, inhibit the denitrification in SFCWs Therefore, in this research the structure and technology of SFCW with aerobic and anaerobic paragraph segments were optimized, by using the multi-point water inflow and setting the corresponding section for the extra pollutant removal. Results showed that with the hydraulic load of 0.06 m3 x (m2 x d)(-1), the COD, NH4(+)-N and TN removal efficiencies in the optimized SFCW achieved 91.6%, 100% and 87.7% respectively. COD/N increased to 10 speedily after the inflow supplement. The multi-point water inflow could add carbon sources, and simultaneously maximum utilization of wetland to remove pollutants. The optimized SFCW could achieve the purposes of purification process optimization, and provide theoretical basis and application foundation for improving the total nitrogen removal efficiency.

  1. Nitrate removal with lateral flow sulphur autotrophic denitrification reactor.

    PubMed

    Lv, Xiaomei; Shao, Mingfei; Li, Ji; Xie, Chuanbo

    2014-01-01

    An innovative lateral flow sulphur autotrophic denitrification (LFSAD) reactor was developed in this study; the treatment performance was evaluated and compared with traditional sulphur/limestone autotrophic denitrification (SLAD) reactor. Results showed that nitrite accumulation in the LFSAD reactor was less than 1.0 mg/L during the whole operation. Denitrification rate increased with the increased initial alkalinity and was approaching saturation when initial alkalinity exceeded 2.5 times the theoretical value. Higher influent nitrate concentration could facilitate nitrate removal capacity. In addition, denitrification efficiency could be promoted under an appropriate reflux ratio, and the highest nitrate removal percentage was achieved under reflux ratio of 200%, increased by 23.8% than that without reflux. Running resistance was only about 1/9 of that in SLAD reactor with equal amount of nitrate removed, which was the prominent excellence of the new reactor. In short, this study indicated that the developed reactor was feasible for nitrate removal from waters with lower concentrations, including contaminated surface water, groundwater or secondary effluent of municipal wastewater treatment with fairly low running resistance. The innovation in reactor design in this study may bring forth new ideas of reactor development of sulphur autotrophic denitrification for nitrate-contaminated water treatment.

  2. Comparison of denitrification between Paracoccus sp. and Diaphorobacter sp.

    PubMed

    Chakravarthy, Srinandan S; Pande, Samay; Kapoor, Ashish; Nerurkar, Anuradha S

    2011-09-01

    Denitrification was compared between Paracoccus sp. and Diaphorobacter sp. in this study, both of which were isolated from activated sludge of a denitrifying reactor. Denitrification of both isolates showed contrasting patterns, where Diaphorobacter sp. showed accumulation of nitrite in the medium while Paracoccus sp. showed no accumulation. The nitrate reduction rate was 1.5 times more than the nitrite reduction in Diaphorobacter sp., as analyzed by the resting state denitrification kinetics. Increasing the nitrate concentration in the medium increased the nitrite accumulation in Diaphorobacter sp., but not in Paracoccus sp., indicating a branched electron transfer during denitrification. Diaphorobacter sp. was unable to denitrify efficiently at high nitrate concentrations from 1 M, but Paracoccus sp. could denitrify even up to 2 M nitrate. Paracoccus sp. was found to be an efficient denitrifier with insignificant amounts of nitrite accumulation, and it could also denitrify high amounts of nitrate up to 2 M. Efficient denitrification without accumulation of intermediates like nitrite is desirable in the removal of high nitrates from wastewaters. Paracoccus sp. is shown to suffice this demand and could be a potential organism to remove high nitrates effectively. PMID:21509603

  3. Inhibition of existing denitrification enzyme activity by chloramphenicol

    USGS Publications Warehouse

    Brooks, M.H.; Smith, R.L.; Macalady, D.L.

    1992-01-01

    Chloramphenicol completely inhibited the activity of existing denitrification enzymes in acetylene-block incubations with (i) sediments from a nitrate-contaminated aquifer and (ii) a continuous culture of denitrifying groundwater bacteria. Control flasks with no antibiotic produced significant amounts of nitrous oxide in the same time period. Amendment with chloramphenicol after nitrous oxide production had begun resulted in a significant decrease in the rate of nitrous oxide production. Chloramphenicol also decreased (>50%) the activity of existing denitrification enzymes in pure cultures of Pseudomonas denitrificans that were harvested during log- phase growth and maintained for 2 weeks in a starvation medium lacking electron donor. Short-term time courses of nitrate consumption and nitrous oxide production in the presence of acetylene with P. denitrificans undergoing carbon starvation were performed under optimal conditions designed to mimic denitrification enzyme activity assays used with soils. Time courses were linear for both chloramphenicol and control flasks, and rate estimates for the two treatments were significantly different at the 95% confidence level. Complete or partial inhibition of existing enzyme activity is not consistent with the current understanding of the mode of action of chloramphenicol or current practice, in which the compound is frequently employed to inhibit de novo protein synthesis during the course of microbial activity assays. The results of this study demonstrate that chloramphenicol amendment can inhibit the activity of existing denitrification enzymes and suggest that caution is needed in the design and interpretation of denitrification activity assays in which chloramphenicol is used to prevent new protein synthesis.

  4. [Study on hydrogen autotrophic denitrification of bio-ceramic reactor].

    PubMed

    Chen, Dan; Wang, Hong-Yu; Song, Min; Yang, Kai; Liu, Chen

    2013-10-01

    Nitrate wastewater is processed in a bio-ceramic reactor based on hydrogen autotrophic denitrification. The implementation procedure of biological denitrification by hydrogen autotrophic denitrification was investigated. The effects of hydraulic retention time, influent nitrate load, influent pH, temperature and the amount of hydrogen were assessed throughout this trial. The results showed that the removal rate of NO-(3) -N was 94. 54% and 97. 47% when the hydraulic retention time was 24 h and 48 h, respectively. When the hydraulic retention time was in the range of 5-16 h, the removal rate gradually dropped with the shortening of the hydraulic retention time. When the influent NO-(3) -N concentration was low, with the increase in the influent NO-(3) -N concentration, the degradation rate also increased. The denitrification was inhibited when the NO-(3) -N concentration was higher than 110 mg.L-1. Neutral and alkaline environment was more suitable for the reactor. The reactor showed a wide range of temperature adaptation and the optimum temperature of the reactor was from 25 to 30 degrees C. When hydrogen was in short supply, the effect of denitrification was significantly reduced. These results indicated the specificity of hydrogen utilization by the denitrifying bacteria. The effluent nitrite nitrogen concentration was maintained at low levels during the operation.

  5. Nitrogen removal in a SBR operated with and without pre-denitrification: effect of the carbon:nitrogen ratio and the cycle time.

    PubMed

    Mees, Juliana Bortoli Rodrigues; Gomes, Simone Damasceno; Hasan, Salah Din Mahmud; Gomes, Benedito Martins; Boas, Márcio Antonio Vilas

    2014-01-01

    The effects of cycle time (CT) (8, 12 and 16h) and C/N ratio (3, 6 and 9) on nitrogen removal efficiencies in a bench top sequencing batch reactor treating slaughterhouse wastewater were investigated under different operating conditions: in condition 1, the reaction comprises an aerobic/anoxic phase and in condition II, the reaction comprises anoxic I/aerobic/anoxic II phases (with pre-denitrification). The greatest percentages of nitrogen removal were obtained in the CT range from 12 to 16 h and C/N ratios from 3 to 6, with mean efficiency values of 80.76% and 85.57% in condition I and 90.99% and 91.09% in condition II. Although condition II gave a higher removal of total inorganic nitrogen (NH4+ - N + NO2- - N + NO3- - N) than condition I, only condition I showed statistically significant and predictive regression for all the steps of nitrogen removal.

  6. The contribution of exopolysaccharides induced struvites accumulation to ammonium adsorption in aerobic granular sludge.

    PubMed

    Lin, Y M; Bassin, J P; van Loosdrecht, M C M

    2012-03-15

    Aerobic granular sludge from a lab-scale reactor with simultaneous nitrification/denitrification and enhanced biological phosphorus removal processes exhibited significant amount of ammonium adsorption (1.5 mg NH4+-N/g TSS at an ammonium concentration of 30 mg N/L). Potassium release accompanied ammonium adsorption, indicating an ion exchange process. The existence of potassium magnesium phosphate (K-struvite) as one of potassium sources in the granular sludge was studied by X-ray diffraction analysis (XRD). Artificially prepared K-struvite was indeed shown to adsorb ammonium. Alginate-like exopolysaccharides were isolated and their inducement for struvite formation was investigated as well. Potassium magnesium phosphate proved to be a major factor for ammonium adsorption on the granular sludge. Struvites (potassium/ammonium magnesium phosphate) accumulate in aerobic granular sludge due to inducing of precipitation by alginate-like exopolysaccharides.

  7. Predicting soil respiration from peatlands.

    PubMed

    Rowson, J G; Worrall, F; Evans, M G; Dixon, S D

    2013-01-01

    This study considers the relative performance of six different models to predict soil respiration from upland peat. Predicting soil respiration is important for global carbon budgets and gap filling measured data from eddy covariance and closed chamber measurements. Further to models previously published new models are presented using two sub-soil zones and season. Models are tested using data from the Bleaklow plateau, southern Pennines, UK. Presented literature models include ANOVA using logged environmental data, the Arrhenius equation, modified versions of the Arrhenius equation to include soil respiration activation energy and water table depth. New models are proposed including the introduction of two soil zones in the peat profile, and season. The first new model proposes a zone of high CO(2) productivity related to increased soil microbial CO(2) production due to the supply of labile carbon from plant root exudates and root respiration. The second zone is a deeper zone where CO(2) production is lower with less labile carbon. A final model allows the zone of high CO(2) production to become dormant during winter months when plants will senesce and will vary depending upon vegetation type within a fixed location. The final model accounted for, on average, 31.9% of variance in net ecosystem respiration within 11 different restoration sites whilst, using the same data set, the best fitting literature equation only accounted for 18.7% of the total variance. Our results demonstrate that soil respiration models can be improved by explicitly accounting for seasonality and the vertically stratified nature of soil processes. These improved models provide an enhanced basis for calculating the peatland carbon budgets which are essential in understanding the role of peatlands in the global C cycle.

  8. ENDOGENOUS RESPIRATION OF STAPHYLOCOCCUS AUREUS

    PubMed Central

    Ramsey, H. H.

    1962-01-01

    Ramsey, H. H. (Stanford University, Palo Alto, Calif.). Endogenous respiration of Staphylococcus aureus. J. Bacteriol. 83:507–514. 1962.—The endogenous respiration of Staphylococcus aureus is dependent upon the medium used to grow the cell suspension. Within wide ranges, the concentration of glucose in the medium has no effect upon subsequent endogenous respiration of the cells, but the concentration of amino acids in the medium, within certain limits, has a very marked effect. The total carbohydrate content of the cells does not decrease during endogenous respiration. As endogenous respiration proceeds, ammonia appears in the supernatant, and the concentration of glutamic acid in the free amino acid pool decreases. Organisms grown in the presence of labeled glutamic acid liberate labeled CO2 when allowed to respire without added substrate. The principal source of this CO2 is the free glutamate in the metabolic pool; its liberation is not suppressed by exogenous glucose or glutamate. With totally labeled cells, the free pool undergoes a rapid, but not total, depletion and remains at a low level for a long time. Activity of the protein fraction declines with time and shows the largest net decrease of all fractions. Exogenous glucose does not inhibit the release of labeled CO2 by totally labeled cells. Other amino acids in the free pool which can serve as endogenous substrates are aspartic acid and, to much lesser extents, glycine and alanine. The results indicate that both free amino acids and cellular protein may serve as endogenous substrates of S. aureus. PMID:14490204

  9. Predicting soil respiration from peatlands.

    PubMed

    Rowson, J G; Worrall, F; Evans, M G; Dixon, S D

    2013-01-01

    This study considers the relative performance of six different models to predict soil respiration from upland peat. Predicting soil respiration is important for global carbon budgets and gap filling measured data from eddy covariance and closed chamber measurements. Further to models previously published new models are presented using two sub-soil zones and season. Models are tested using data from the Bleaklow plateau, southern Pennines, UK. Presented literature models include ANOVA using logged environmental data, the Arrhenius equation, modified versions of the Arrhenius equation to include soil respiration activation energy and water table depth. New models are proposed including the introduction of two soil zones in the peat profile, and season. The first new model proposes a zone of high CO(2) productivity related to increased soil microbial CO(2) production due to the supply of labile carbon from plant root exudates and root respiration. The second zone is a deeper zone where CO(2) production is lower with less labile carbon. A final model allows the zone of high CO(2) production to become dormant during winter months when plants will senesce and will vary depending upon vegetation type within a fixed location. The final model accounted for, on average, 31.9% of variance in net ecosystem respiration within 11 different restoration sites whilst, using the same data set, the best fitting literature equation only accounted for 18.7% of the total variance. Our results demonstrate that soil respiration models can be improved by explicitly accounting for seasonality and the vertically stratified nature of soil processes. These improved models provide an enhanced basis for calculating the peatland carbon budgets which are essential in understanding the role of peatlands in the global C cycle. PMID:23178842

  10. A Function for Representing the Biological Challenge to Respiration Posed by Ocean Acidification and the Geochemical Consequences Inferred

    NASA Astrophysics Data System (ADS)

    Peltzer, E. T.; Brewer, P. G.

    2008-12-01

    Increasing levels of dissolved total CO2 in the ocean from the invasion of fossil fuel CO2 via the atmosphere are widely believed to pose challenges to marine life on several fronts. This is most often expressed as a concern from the resulting lower pH, and the impact of this on calcification in marine organisms (coral reefs, calcareous phytoplankton etc.). These concerns are real, but calcification is by no means the only process affected, nor is the fossil fuel CO2 signal the only geochemical driver of the rapidly emerging deep-sea biological stress. Physical climate change is reducing deep-sea ventilation rates, and thereby leading to increasing oxygen deficits and concomitant increased respiratory CO2. We seek to understand the combined effects of the downward penetration of the fossil fuel signal, and the emergence of the depleted O2/increased respiratory CO2 signal at depth. As a first step, we seek to provide a simple function to capture the changing oceanic state. The most basic thermodynamic equation for the functioning of marine animals can be written as Corg + O2 → CO2 , and this results in the simple Gibbs free energy equation: ΔG° = - RT * ln [fCO2]/[Corg]*[fO2], in which the ratio of pO2 to pCO2 emerges as the dominant factor. From this we construct a simple Respiration Index: RI = log10 (pO2/pCO2), which is linear in energy and map this function for key oceanic regions illustrating the expansion of oceanic dead zones. The formal thermodynamic limit for aerobic life is RI = 0; in practice field data shows that at RI ~ 0.7 microbes turn to electron acceptors other than O2, and denitrification begins to occur. This likely represents the lowest limit for the long-term functioning of higher animals, and the zone RI = 0.7 to 1 appears to present challenges to basic functioning of many marine species. In addition, there are large regions of the ocean where denitrification already occurs, and these zones will expand greatly in size as the combined

  11. [Dark respiration of terrestrial vegetations: a review].

    PubMed

    Sun, Jin-Wei; Yuan, Feng-Hui; Guan, De-Xin; Wu, Jia-Bing

    2013-06-01

    The source and sink effect of terrestrial plants is one of the hotspots in terrestrial ecosystem research under the background of global change. Dark respiration of terrestrial plants accounts for a large fraction of total net carbon balance, playing an important role in the research of carbon cycle under global climate change. However, there is little study on plant dark respiration. This paper summarized the physiological processes of plant dark respiration, measurement methods of the dark respiration, and the effects of plant biology and environmental factors on the dark respiration. The uncertainty of the dark respiration estimation was analyzed, and the future hotspots of related researches were pointed out.

  12. Remediation of nitrate-contaminated wastewater using denitrification biofilters with straws of ornamental flowers added as carbon source.

    PubMed

    Chang, Junjun; Ma, Luyao; Zhou, Yuanyang; Zhang, Shenghua; Wang, Weilu

    2016-01-01

    Straws of four ornamental flowers (carnation, rose, lily, and violet) were added into denitrification biofilters using gravel as matrix through vertically installed perforated polyvinylchloride pipes to provide organic carbon for the treatment of nitrate-contaminated wastewater operating in batch mode. Removal efficiencies of nitrate and phosphate, as well as temporal variations of nitrogen and carbon during batches 10 and 19, were investigated and assessed. Nitrate removal was efficiently enhanced by the addition of flower straws, but decreased gradually as the organic substances were consumed. Phosphate removal was also improved, although this very limited. High nitrate removal rates were achieved during the initial 12 h in the two batches each lasting for 3 days, along with the depletion of influent dissolved oxygen due to aerobic degradation of the organic compounds. NO2(-)-N of 0.01-2.83 mg/L and NH4(+)-N of 0.02-1.69 mg/L were formed and both positively correlated to the nitrate reduced. Inorganic carbon (IC) concentrations increased during the batches and varied conversely with the nitrate contents, and could be indicative of nitrate removal due to the highly significant positive correlation between NO3(-)-N removed and IC concentration (r(2) = 0.881, p < 0.0001). It is feasible and economical to use the denitrification biofilter to treat nitrate-contaminated wastewater, although further optimization of carbon source addition is still required. PMID:27438246

  13. [Rapid Start-up of Simultaneous Nitrification and Denitrification Coupled Phosphorus Removal Process and Its Performing Characteristics].

    PubMed

    Leng, Lu; Xin, Xin; Lu, Hang; Tang, Ya-nan; Wan, Li-hua; Guo, Jun-yuan; Cheng, Qing-feng

    2015-11-01

    In this study, simultaneous nitrification and denitrification (SND) coupled Phosphorus removal process through gradually decreasing DO concentration was investigated by treating wastewater with a low COD/TN ratio (C/N = 3 : 1-4: 1) in a sequencing batch reactor (SBR) inoculated with aerobic granular sludge (AGS). Successful SND coupled Phosphorus phenomenon occurred after 20d at the DO concentration of 0.50-1.0 mg x L(-1). In the following 40 days, the average removal rates of COD, NH4(+) -N, TN and TP were 84.84% , 93.51%, 77.06% and 85.69%, and the NO3(-) -N and NO2(-) -N average accumulations in the effluent were only 4.01 mg x L(-1) and 3.17 mg x L(-1), respectively. The AGS had complete forms and good settling performances, and the sludge volume index (SVI) was about 55.22 mL x g(-1) at the end of starting-up stage. The results of different nitrogen sources showed that the removal rate of TN was in the order of NH4(+) -N > NO2(-) -N > NO3(-) -N, and the removal rate of TP was in the order of NO3(-) -N > NO2(-) -N > NH4(+) -N. The nitrogen and phosphorus removal of wastewater were mainly realized by simultaneous nitrification and denitrification and denitrifying phosphorus removal, respectively.

  14. Remediation of nitrate-contaminated wastewater using denitrification biofilters with straws of ornamental flowers added as carbon source.

    PubMed

    Chang, Junjun; Ma, Luyao; Zhou, Yuanyang; Zhang, Shenghua; Wang, Weilu

    2016-01-01

    Straws of four ornamental flowers (carnation, rose, lily, and violet) were added into denitrification biofilters using gravel as matrix through vertically installed perforated polyvinylchloride pipes to provide organic carbon for the treatment of nitrate-contaminated wastewater operating in batch mode. Removal efficiencies of nitrate and phosphate, as well as temporal variations of nitrogen and carbon during batches 10 and 19, were investigated and assessed. Nitrate removal was efficiently enhanced by the addition of flower straws, but decreased gradually as the organic substances were consumed. Phosphate removal was also improved, although this very limited. High nitrate removal rates were achieved during the initial 12 h in the two batches each lasting for 3 days, along with the depletion of influent dissolved oxygen due to aerobic degradation of the organic compounds. NO2(-)-N of 0.01-2.83 mg/L and NH4(+)-N of 0.02-1.69 mg/L were formed and both positively correlated to the nitrate reduced. Inorganic carbon (IC) concentrations increased during the batches and varied conversely with the nitrate contents, and could be indicative of nitrate removal due to the highly significant positive correlation between NO3(-)-N removed and IC concentration (r(2) = 0.881, p < 0.0001). It is feasible and economical to use the denitrification biofilter to treat nitrate-contaminated wastewater, although further optimization of carbon source addition is still required.

  15. [Rapid Start-up of Simultaneous Nitrification and Denitrification Coupled Phosphorus Removal Process and Its Performing Characteristics].

    PubMed

    Leng, Lu; Xin, Xin; Lu, Hang; Tang, Ya-nan; Wan, Li-hua; Guo, Jun-yuan; Cheng, Qing-feng

    2015-11-01

    In this study, simultaneous nitrification and denitrification (SND) coupled Phosphorus removal process through gradually decreasing DO concentration was investigated by treating wastewater with a low COD/TN ratio (C/N = 3 : 1-4: 1) in a sequencing batch reactor (SBR) inoculated with aerobic granular sludge (AGS). Successful SND coupled Phosphorus phenomenon occurred after 20d at the DO concentration of 0.50-1.0 mg x L(-1). In the following 40 days, the average removal rates of COD, NH4(+) -N, TN and TP were 84.84% , 93.51%, 77.06% and 85.69%, and the NO3(-) -N and NO2(-) -N average accumulations in the effluent were only 4.01 mg x L(-1) and 3.17 mg x L(-1), respectively. The AGS had complete forms and good settling performances, and the sludge volume index (SVI) was about 55.22 mL x g(-1) at the end of starting-up stage. The results of different nitrogen sources showed that the removal rate of TN was in the order of NH4(+) -N > NO2(-) -N > NO3(-) -N, and the removal rate of TP was in the order of NO3(-) -N > NO2(-) -N > NH4(+) -N. The nitrogen and phosphorus removal of wastewater were mainly realized by simultaneous nitrification and denitrification and denitrifying phosphorus removal, respectively. PMID:26911007

  16. Assessment of the denitrification process in alluvial wetlands at floodplain scale using the SWAT model

    Technology Transfer Automated Retrieval System (TEKTRAN)

    As alluvial plains support intensive agricultural activities, they often suffer from groundwater nitrate pollution. Denitrification is recognized as an important process in nitrate pollution control in riparian zones. In shallow aquifer zones influenced by recharged surface water, denitrification ...

  17. Impact of chloride on denitrification potential in roadside wetlands.

    PubMed

    Lancaster, Nakita A; Bushey, Joseph T; Tobias, Craig R; Song, Bongkeun; Vadas, Timothy M

    2016-05-01

    Developed landscapes are exposed to changes in hydrology and water chemistry that limit their ability to mitigate detrimental impacts to coastal water bodies, particularly those that result from stormwater runoff. The elevated level of impervious cover increases not only runoff but also contaminant loading of nutrients, metals, and road salt used for deicing to water bodies. Here we investigate the impact that road salt has on denitrification in roadside environments. Sediments were collected from a series of forested and roadside wetlands and acclimated with a range of Cl(-) concentrations from 0 to 5000 mg L(-1) for 96 h. Denitrification rates were measured by the isotope pairing technique using (15)N-NO3(-), while denitrifying community structures were compared using terminal restriction fragment length polymorphism (T-RFLP) of nitrous oxide reductase genes (nosZ). Chloride significantly (p < 0.05) inhibited denitrification in forested wetlands at a Cl(-) dosage of 2500 or 5000 mg L(-1), but the decrease in denitrification rates was less and not significant for the roadside wetlands historically exposed to elevated concentrations of Cl(-). The difference could not be attributed to other significant changes in conditions, such as DOC concentrations, N species concentrations, or pH levels. Denitrifying communities, as measured by T-RFs of the nosZ gene, in the roadside wetlands with elevated concentration of Cl(-) were distinctly different and more diverse compared to forested wetlands, and also different in roadside wetlands after 96 h exposures to Cl(-). The shifts in denitrifying communities seem to minimize the decrease in denitrification rates in the wetlands previously exposed to Cl. As development results in more Cl(-) use and exposure to a broad range of natural or manmade wetland structures, an understanding of the seasonal effect of Cl on denitrification processes in these systems would aid in design or mitigation of the effects on N removal

  18. Impact of chloride on denitrification potential in roadside wetlands.

    PubMed

    Lancaster, Nakita A; Bushey, Joseph T; Tobias, Craig R; Song, Bongkeun; Vadas, Timothy M

    2016-05-01

    Developed landscapes are exposed to changes in hydrology and water chemistry that limit their ability to mitigate detrimental impacts to coastal water bodies, particularly those that result from stormwater runoff. The elevated level of impervious cover increases not only runoff but also contaminant loading of nutrients, metals, and road salt used for deicing to water bodies. Here we investigate the impact that road salt has on denitrification in roadside environments. Sediments were collected from a series of forested and roadside wetlands and acclimated with a range of Cl(-) concentrations from 0 to 5000 mg L(-1) for 96 h. Denitrification rates were measured by the isotope pairing technique using (15)N-NO3(-), while denitrifying community structures were compared using terminal restriction fragment length polymorphism (T-RFLP) of nitrous oxide reductase genes (nosZ). Chloride significantly (p < 0.05) inhibited denitrification in forested wetlands at a Cl(-) dosage of 2500 or 5000 mg L(-1), but the decrease in denitrification rates was less and not significant for the roadside wetlands historically exposed to elevated concentrations of Cl(-). The difference could not be attributed to other significant changes in conditions, such as DOC concentrations, N species concentrations, or pH levels. Denitrifying communities, as measured by T-RFs of the nosZ gene, in the roadside wetlands with elevated concentration of Cl(-) were distinctly different and more diverse compared to forested wetlands, and also different in roadside wetlands after 96 h exposures to Cl(-). The shifts in denitrifying communities seem to minimize the decrease in denitrification rates in the wetlands previously exposed to Cl. As development results in more Cl(-) use and exposure to a broad range of natural or manmade wetland structures, an understanding of the seasonal effect of Cl on denitrification processes in these systems would aid in design or mitigation of the effects on N removal

  19. Denitrification 'Woodchip' Bioreactors for Productive and Sustainable Agricultural Systems

    NASA Astrophysics Data System (ADS)

    Christianson, L. E.; Summerfelt, S.; Sharrer, K.; Lepine, C.; Helmers, M. J.

    2014-12-01

    Growing alarm about negative cascading effects of reactive nitrogen in the environment has led to multifaceted efforts to address elevated nitrate-nitrogen levels in water bodies worldwide. The best way to mitigate N-related impacts, such as hypoxic zones and human health concerns, is to convert nitrate to stable, non-reactive dinitrogen gas through the natural process of denitrification. This means denitrification technologies need to be one of our major strategies for tackling the grand challenge of managing human-induced changes to our global nitrogen cycle. While denitrification technologies have historically been focused on wastewater treatment, there is great interest in new lower-tech options for treating effluent and drainage water from one of our largest reactive nitrogen emitters -- agriculture. Denitrification 'woodchip' bioreactors are able to enhance this natural N-conversion via addition of a solid carbon source (e.g., woodchips) and through designs that facilitate development of anoxic conditions required for denitrification. Wood-based denitrification technologies such as woodchip bioreactors and 'sawdust' walls for groundwater have been shown to be effective at reducing nitrate loads in agricultural settings around the world. Designing these systems to be low-maintenance and to avoid removing land from agricultural production has been a primary focus of this "farmer-friendly" technology. This presentation provides a background on woodchip bioreactors including design considerations, N-removal performance, and current research worldwide. Woodchip bioreactors for the agricultural sector are an accessible new option to address society's interest in improving water quality while simultaneously allowing highly productive agricultural systems to continue to provide food in the face of increasing demand, changing global diets, and fluctuating weather.

  20. Advanced phosphorus recovery using a novel SBR system with granular sludge in simultaneous nitrification, denitrification and phosphorus removal process.

    PubMed

    Lu, Yong-Ze; Wang, Hou-Feng; Kotsopoulos, Thomas A; Zeng, Raymond J

    2016-05-01

    In this study, a novel process for phosphorus (P) recovery without excess sludge production from granular sludge in simultaneous nitrification-denitrification and P removal (SNDPR) system is presented. Aerobic microbial granules were successfully cultivated in an alternating aerobic-anaerobic sequencing batch reactor (SBR) for removing P and nitrogen (N). Dense and stable granular sludge was created, and the SBR system showed good performance in terms of P and N removal. The removal efficiency was approximately 65.22 % for N, and P was completely removed under stable operating conditions. Afterward, new operating conditions were applied in order to enhance P recovering without excess sludge production. The initial SBR system was equipped with a batch reactor and a non-woven cloth filter, and 1.37 g of CH3COONa·3H2O was added to the batch reactor after mixing it with 1 L of sludge derived from the SBR reactor to enhance P release in the liquid fraction, this comprises the new system configuration. Under the new operating conditions, 93.19 % of the P contained in wastewater was released in the liquid fraction as concentrated orthophosphate from part of granular sludge. This amount of P could be efficiently recovered in the form of struvite. Meanwhile, a deterioration of the denitrification efficiency was observed and the granules were disintegrated into smaller particles. The biomass concentration in the system increased firstly and then maintained at 4.0 ± 0.15 gVSS/L afterward. These results indicate that this P recovery operating (PRO) mode is a promising method to recover P in a SNDPR system with granular sludge. In addition, new insights into the granule transformation when confronted with high chemical oxygen demand (COD) load were provided. PMID:26728017

  1. Observations of denitrification and dehydration in the winter polar stratospheres

    NASA Technical Reports Server (NTRS)

    Fahey, D. W.; Kelly, K. K.; Kawa, S. R.; Tuck, A. F.; Loewenstein, M.

    1990-01-01

    It is argued that denitrification of the Arctic stratosphere can be explained by the selective growth and sedimentation of aerosol particles rich in nitric acid. Because reactive nitrogen species moderate the destruction of ozone by chlorine-catalyzed reactions by sequestering chlorine in reservoir species such as ClONO2, the possibility of the removal of reactive nitrogen without dehydration should be allowed for in attempts to model ozone depletion in the Arctic. Indeed, denitrification along with elevated concentrations of reactive chlorine observed in 1989 indicate that the Arctic was chemically primed for ozone destruction without an extended period of temperatures below the frost point, as is characteristic of the Antarctic.

  2. Soil Respiration - A Geochemist's Perspective

    NASA Astrophysics Data System (ADS)

    Van Cappellen, P.

    2015-12-01

    Soil biogeochemistry is largely driven by the decomposition of plant-derived organic matter by soil microorganisms. In addition to its effects on water quality and soil fertility, the decomposition of organic matter couples soil processes to climate, via the production and emission of greenhouse gases. In this presentation, I will review a number of key factors controlling the rate of decomposition of soil organic matter. In particular, I will discuss the importance of the spatial and temporal variations in redox conditions as drivers of soil respiration. The discussion will highlight the limitations of current soil respiration models based on partitioning soil organic matter in a finite number of pools of different degradability. In order to predict the sensitivity of soil respiration to anthropogenic pressures - including climate warming - it is crucial to relate the apparent degradability of soil organic matter to the geochemical and hydrological dynamics of the soil environment. Overall, there remains much scope for geochemists to help develop more robust, process-based, representations of soil respiration in global carbon models and climate predictions.

  3. Persistence of respirator use learning.

    PubMed

    Harber, Philip; Su, Jing; Hu, Cheng Cheng

    2014-01-01

    Although retraining and repeat fit-testing are needed for respirator users, the optimal frequency is uncertain. The persistence of proper respirator donning/doffing techniques and changes in quantitative fit factor over 6 months after initial training were measured in this study. Initial training was designed for rapid rollout situations in which direct contact with well-trained occupational health professionals may be infeasible. Subjects (n = 175) were assigned randomly to use either a filtering facepiece N95 (FFR) or dual cartridge half facemask (HFM) respirator. Each was assigned randomly to one of three training methods-printed brochure, video, or computer-based training. Soon after initial training, quantitative fit and measures of proper technique were determined. These measurements were repeated 6 months later. In the six-month followup, subjects were randomized to receive either a brief reminder card or a placebo card. Total performance score, major errors, and quantitative fit all became significantly worse at 6 months. An individual's result soon after training was the most important predictor of performance 6 months later. There was a marginal not statistically significant tendency for those initially trained by video to have better protection 6 months later. The study suggests that persons who use respirators intermittently should be thoroughly retrained and reevaluated periodically. [Supplementary materials are available for this article. Go to the publisher's online edition of Journal of Occupational and Environmental Hygiene for the following free supplemental resource: Additional statistical analyses. PMID:24847912

  4. Adaptation of Aerobically Growing Pseudomonas aeruginosa to Copper Starvation▿ †

    PubMed Central

    Frangipani, Emanuela; Slaveykova, Vera I.; Reimmann, Cornelia; Haas, Dieter

    2008-01-01

    Restricted bioavailability of copper in certain environments can interfere with cellular respiration because copper is an essential cofactor of most terminal oxidases. The global response of the metabolically versatile bacterium and opportunistic pathogen Pseudomonas aeruginosa to copper limitation was assessed under aerobic conditions. Expression of cioAB (encoding an alternative, copper-independent, cyanide-resistant ubiquinol oxidase) was upregulated, whereas numerous iron uptake functions (including the siderophores pyoverdine and pyochelin) were expressed at reduced levels, presumably reflecting a lower demand for iron by respiratory enzymes. Wild-type P. aeruginosa was able to grow aerobically in a defined glucose medium depleted of copper, whereas a cioAB mutant did not grow. Thus, P. aeruginosa relies on the CioAB enzyme to cope with severe copper deprivation. A quadruple cyo cco1 cco2 cox mutant, which was deleted for all known heme-copper terminal oxidases of P. aeruginosa, grew aerobically, albeit more slowly than did the wild type, indicating that the CioAB enzyme is capable of energy conservation. However, the expression of a cioA′-′lacZ fusion was less dependent on the copper status in the quadruple mutant than in the wild type, suggesting that copper availability might affect cioAB expression indirectly, via the function of the heme-copper oxidases. PMID:18708503

  5. Adaptation of aerobically growing Pseudomonas aeruginosa to copper starvation.

    PubMed

    Frangipani, Emanuela; Slaveykova, Vera I; Reimmann, Cornelia; Haas, Dieter

    2008-10-01

    Restricted bioavailability of copper in certain environments can interfere with cellular respiration because copper is an essential cofactor of most terminal oxidases. The global response of the metabolically versatile bacterium and opportunistic pathogen Pseudomonas aeruginosa to copper limitation was assessed under aerobic conditions. Expression of cioAB (encoding an alternative, copper-independent, cyanide-resistant ubiquinol oxidase) was upregulated, whereas numerous iron uptake functions (including the siderophores pyoverdine and pyochelin) were expressed at reduced levels, presumably reflecting a lower demand for iron by respiratory enzymes. Wild-type P. aeruginosa was able to grow aerobically in a defined glucose medium depleted of copper, whereas a cioAB mutant did not grow. Thus, P. aeruginosa relies on the CioAB enzyme to cope with severe copper deprivation. A quadruple cyo cco1 cco2 cox mutant, which was deleted for all known heme-copper terminal oxidases of P. aeruginosa, grew aerobically, albeit more slowly than did the wild type, indicating that the CioAB enzyme is capable of energy conservation. However, the expression of a cioA'-'lacZ fusion was less dependent on the copper status in the quadruple mutant than in the wild type, suggesting that copper availability might affect cioAB expression indirectly, via the function of the heme-copper oxidases. PMID:18708503

  6. 30 CFR 57.5044 - Respirators.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... exceeding 1.0 WL, miners shall wear respirators approved by NIOSH for radon daughters prior to July 10, 1995 or under the equivalent section of 42 CFR part 84 and such respirator use shall be in compliance...

  7. 30 CFR 57.5044 - Respirators.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... exceeding 1.0 WL, miners shall wear respirators approved by NIOSH for radon daughters prior to July 10, 1995 or under the equivalent section of 42 CFR part 84 and such respirator use shall be in compliance...

  8. 30 CFR 57.5044 - Respirators.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... exceeding 1.0 WL, miners shall wear respirators approved by NIOSH for radon daughters prior to July 10, 1995 or under the equivalent section of 42 CFR part 84 and such respirator use shall be in compliance...

  9. 30 CFR 57.5044 - Respirators.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... exceeding 1.0 WL, miners shall wear respirators approved by NIOSH for radon daughters prior to July 10, 1995 or under the equivalent section of 42 CFR part 84 and such respirator use shall be in compliance...

  10. 30 CFR 57.5044 - Respirators.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... exceeding 1.0 WL, miners shall wear respirators approved by NIOSH for radon daughters prior to July 10, 1995 or under the equivalent section of 42 CFR part 84 and such respirator use shall be in compliance...

  11. Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived Pseudomonad

    NASA Astrophysics Data System (ADS)

    Beller, H. R.; Han, R.; Geller, J. T.

    2009-12-01

    Chromium contamination of groundwater is widespread within the Department of Energy (DOE) complex. For example, at DOE’s Hanford 100 Area in Washington state, the volume of Cr-contaminated groundwater is estimated to be 1.5 billion gallons. Bioremediation (in situ reductive immobilization) studies involving injection of a lactate-containing polymer have been conducted in the Hanford 100H area, where we have observed sequential use of the dissolved electron acceptors present in groundwater, namely, oxygen, nitrate, and sulfate. As part of an effort to explore Cr(VI) reduction under relevant electron-accepting conditions and with relevant bacteria, we have conducted studies with strain RCH2, a denitrifying bacterium similar to Pseudomonas stutzeri that was isolated from the Hanford 100H aquifer. Cell suspension studies with lactate demonstrated that Cr(VI) reduction could occur under either denitrifying or aerobic conditions (at comparable rates), and that reduction was much more rapid when the terminal electron acceptor (i.e., nitrate or O2) was present. It appears that, under both aerobic and denitrifying conditions, the chromate reductase gene(s) are not inducible by Cr; this conclusion is based on the fact that these cell suspension studies were conducted with cells grown in the absence of Cr and resuspended in a buffer that included chloramphenicol, which inhibits protein synthesis. As our studies indicate that anaerobic Cr(VI) reduction by strain RCH2 is much more rapid in the presence of nitrate (i.e., during denitrification) than in its absence, we explored molecular methods that could readily assess in situ denitrification. Specifically, we investigated whether the gene and transcript copy number of diagnostic denitrification genes (nirS and narG) in groundwater could be used to estimate in situ denitrification rates. Continuous culture (chemostat) studies showed strong correlations (r2 values > 0.93) between denitrification rate and either nirS or nar

  12. The Source of Carbon for Root Respiration

    NASA Astrophysics Data System (ADS)

    Cisneros-Dozal, L.; Trumbore, S.; Zheng, S.

    2004-12-01

    In the Enriched Background Isotope Study (EBIS) that took advantage of a whole-ecosystem radiocarbon label that occurred in the temperate forest near Oak Ridge, Tennessee, we measured the radiocarbon signature of total soil respiration, heterotrophic respiration and root respiration, at different times during the last 3 growing seasons (2002-2004). By applying a mass balance approach, the relative and absolute contributions of heterotrophic and root respiration to total soil respiration were estimated. In contrast to heterotrophic respiration, root respiration seemed to be less affected by changes in soil moisture and temperature but rather showed a link to photosynthetic activity with a very similar pattern during the growing season as that of leaf area index. The radiocarbon signature of root respiration was very dynamic with low values in spring compared to the summer. The sources of variation can include changes in the local atmospheric signature and/or changes in the source of C being respired. Two different sites with different values and patterns of local atmospheric radiocarbon signature showed the same pattern in radiocarbon signatures of root respiration indicating that the source of variation was phenological. Low values during the spring could indicate the use of stored carbohydrates switching to more recent photosynthetic products as the summer progresses. As a first attempt to elucidate the source of C respired by roots, we will compare the radiocarbon content of starch, cellulose and soluble sugars in roots to that of bulk root material and root respired CO2. These radiocarbon signatures can help us identify the pool of C that is most likely being respired by roots during the growing season. A better understanding of the source of C for root respiration has implications for understanding the role of root respiration in C cycling in temperate forests, specifically the timescale over which carbon is fixed through photosynthesis and returned to the

  13. Electron affinity coefficients of nitrogen oxides and biodegradation kinetics in denitrification of contaminated stream water.

    PubMed

    Kim, Seung-Hyun; Chung, Jong-Bae; Jeong, Byeong-Ryong; Lee, Young-Deuk; Prasher, Shiv O

    2003-01-01

    During the dry season in Korea, rivers become more vulnerable to contamination by biochemical oxygen demand (BOD) and nitrogen. It is hypothesized that the natural characteristics of the streams in Korea allow the contaminated water to be treated at the tributaries. Down-stream river water quality in Korea may be improved by spraying the contaminated stream water from the tributaries over the surrounding floodplains. The consequent water filtration through the soil could remove the contaminants through aerobic and denitrifying reactions. In this study, the kinetics parameters of the denitrifying reaction in floodplain filtration were determined using contaminated stream water. For the electron donor the Monod kinetics was used, while the competitive Michaelis-Menten model was employed for the electron acceptors. The parameters to the competitive Michaelis-Menten model were found using continuous denitrifying reactions, instead of the batch reactions employed in previous studies, to match the conditions needed to apply the competitive Michaelis-Menten kinetics. From the result, it was found that continuous reactions as well as batch reactions could be used to determine the affinity coefficients in denitrification. The results of this study also showed that the affinity coefficient of NO2, using continuous reactions, was similar to that of other studies in the literature found via batch reactions, whereas the affinity coefficient of N2O was much larger than that acquired with batch reactions. The parameters obtained in this study will be used in future work to simulate the contaminant behaviors during floodplain filtration using a mathematical model.

  14. Simultaneous nitrification and denitrification by novel heterotrophs in remediation of fish processing effluent.

    PubMed

    Mishra, Saurabh S; Markande, Anoop R; Keluskar, Radhika P; Karunasagar, Indrani; Nayak, Binaya B

    2015-06-01

    Three isolates viz. Lysinibacillus sp. HT13, Alcaligenes sp. HT15 and Proteus sp. HT37 isolated from fish processing effluent and having a C/N ratio of 2, removed 218, 169, and 400 µg cell(-1) day(-1) NH4(+)-N, respectively without subsequent build up of nitrite or nitrate. Ability of the selected isolates in removing NH4(+)-N, NO2(-)-N, and NO3(-)-N was checked in the presence of four commonly reported and tested effluent carbon sources viz. pyruvate, glycerol, methanol, and acetate. Further, when supplemented to fish processing wastewater containing 234 ppm total Kjeldahl's nitrogen, Lysinibacillus sp. HT13, Alcaligenes sp. HT15, and Proteus sp. HT37 could remediate 95.74, 86.17, and 76.6% nitrogen, respectively in 48 h. This is the first report of a Lysinibacillus sp. carrying out aerobically the process of simultaneous nitrification and denitrification. The results demonstrate the potential of the isolates for use in treatment of fish processing effluents and demonstrating the efficient removal of ammonia. PMID:25801104

  15. Gene expression profiling of Corynebacterium glutamicum during Anaerobic nitrate respiration: induction of the SOS response for cell survival.

    PubMed

    Nishimura, Taku; Teramoto, Haruhiko; Inui, Masayuki; Yukawa, Hideaki

    2011-03-01

    The gene expression profile of Corynebacterium glutamicum under anaerobic nitrate respiration revealed marked differences in the expression levels of a number of genes involved in a variety of cellular functions, including carbon metabolism and respiratory electron transport chain, compared to the profile under aerobic conditions using DNA microarrays. Many SOS genes were upregulated by the shift from aerobic to anaerobic nitrate respiration. An elongated cell morphology, similar to that induced by the DivS-mediated suppression of cell division upon cell exposure to the DNA-damaging reagent mitomycin C, was observed in cells subjected to anaerobic nitrate respiration. None of these transcriptional and morphological differences were observed in a recA mutant strain lacking a functional RecA regulator of the SOS response. The recA mutant cells additionally showed significantly reduced viability compared to wild-type cells similarly grown under anaerobic nitrate respiration. These results suggest a role for the RecA-mediated SOS response in the ability of cells to survive any DNA damage that may result from anaerobic nitrate respiration in C. glutamicum.

  16. Excessive use of nitrogen in Chinese agriculture results in high N(2) O/(N(2) O+N(2) ) product ratio of denitrification, primarily due to acidification of the soils.

    PubMed

    Qu, Zhi; Wang, Jingguo; Almøy, Trygve; Bakken, Lars R

    2014-05-01

    China is the world's largest producer and consumer of fertilizer N, and decades of overuse has caused nitrate leaching and possibly soil acidification. We hypothesized that this would enhance the soils' propensity to emit N(2) O from denitrification by reducing the expression of the enzyme N(2) O reductase. We investigated this by standardized oxic/anoxic incubations of soils from five long-term fertilization experiments in different regions of China. After adjusting the nitrate concentration to 2 mM, we measured oxic respiration (R), potential denitrification (D), substrate-induced denitrification, and the denitrification product stoichiometry (NO, N(2) O, N(2) ). Soils with a history of high fertilizer N levels had high N(2) O/(N(2) O+N(2)) ratios, but only in those field experiments where soil pH had been lowered by N fertilization. By comparing all soils, we found a strong negative correlation between pH and the N(2) O/(N(2) O+N(2)) product ratio (r(2) = 0.759, P < 0.001). In contrast, the potential denitrification (D) was found to be a linear function of oxic respiration (R), and the ratio D/R was largely unaffected by soil pH. The immediate effect of liming acidified soils was lowered N(2) O/(N(2) O+N(2)) ratios. The results provide evidence that soil pH has a marginal direct effect on potential denitrification, but that it is the master variable controlling the percentage of denitrified N emitted as N(2) O. It has been known for long that low pH may result in high N(2) O/(N(2) O+N(2)) product ratios of denitrification, but our documentation of a pervasive pH-control of this ratio across soil types and management practices is new. The results are in good agreement with new understanding of how pH may interfere with the expression of N2 O reductase. We argue that the management of soil pH should be high on the agenda for mitigating N(2) O emissions in the future, particularly for countries where ongoing intensification of plant production is likely to acidify

  17. Excessive use of nitrogen in Chinese agriculture results in high N2O/(N2O+N2) product ratio of denitrification, primarily due to acidification of the soils

    PubMed Central

    Qu, Zhi; Wang, Jingguo; Almøy, Trygve; Bakken, Lars R

    2014-01-01

    China is the world's largest producer and consumer of fertilizer N, and decades of overuse has caused nitrate leaching and possibly soil acidification. We hypothesized that this would enhance the soils' propensity to emit N2O from denitrification by reducing the expression of the enzyme N2O reductase. We investigated this by standardized oxic/anoxic incubations of soils from five long-term fertilization experiments in different regions of China. After adjusting the nitrate concentration to 2 mM, we measured oxic respiration (R), potential denitrification (D), substrate-induced denitrification, and the denitrification product stoichiometry (NO, N2O, N2). Soils with a history of high fertilizer N levels had high N2O/(N2O+N2) ratios, but only in those field experiments where soil pH had been lowered by N fertilization. By comparing all soils, we found a strong negative correlation between pH and the N2O/(N2O+N2) product ratio (r2 = 0.759, P < 0.001). In contrast, the potential denitrification (D) was found to be a linear function of oxic respiration (R), and the ratio D/R was largely unaffected by soil pH. The immediate effect of liming acidified soils was lowered N2O/(N2O+N2) ratios. The results provide evidence that soil pH has a marginal direct effect on potential denitrification, but that it is the master variable controlling the percentage of denitrified N emitted as N2O. It has been known for long that low pH may result in high N2O/(N2O+N2) product ratios of denitrification, but our documentation of a pervasive pH-control of this ratio across soil types and management practices is new. The results are in good agreement with new understanding of how pH may interfere with the expression of N2O reductase. We argue that the management of soil pH should be high on the agenda for mitigating N2O emissions in the future, particularly for countries where ongoing intensification of plant production is likely to acidify the soils. PMID:24249526

  18. Herbicide and antibiotic removal by woodchip denitrification filters: Sorption processes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Batch sorption and desorption experiments to evaluate the retention of the agrichemicals onto wood chips from an in situ wood chip denitrification wall were conducted for atrazine, enrofloxacin, monensin, and sulfamethazine. Estimated Freundlich distribution coefficients (Kf) showed that the order o...

  19. Herbicide and antibiotic removal by woodchip denitrification filters: Sorption processes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Batch sorption and desorption experiments to evaluate the retention of the agrichemicals onto wood chips from an in situ wood chip denitrification wall were conducted for atrazine, enrofloxacin, monensin and sulfamethazine. Estimated Freundlich distribution coefficients (Kf) showed that the order of...

  20. Denitrification in Alluvial Wetlands in an Urban Landscape

    EPA Science Inventory

    Riparian wetlands have been shown to be particularly effective “sinks” for nitrate-N (NO3-), minimizing the downstream export of nitrogen (N) to streams and coastal water bodies. However, the vast majority of riparian denitrification research has been in agricultural and forested...

  1. Nitrous oxide emission from denitrification in stream and river networks

    EPA Science Inventory

    Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N2O via microbial denitrification which converts N to N2O and dinitrog...

  2. Sediment nitrification and denitrification rates in a Lake Superior estuary

    EPA Science Inventory

    Microbially-mediated nitrogen (N) cycling in aquatic sediments has been recognized as an ecosystem service due to mitigation of N-transport to receiving waters. In 2011 and 2012, we compared nitrification (NIT), unamended (DeNIT) and amended (DEA) denitrification rates among spat...

  3. Internal hydraulics of an agricultural drainage denitrification bioreactor

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Denitrification bioreactors to reduce the amount of nitrate-nitrogen in agricultural drainage are now being deployed across the U.S. Midwest. However, there are still many unknowns regarding internal hydraulic-driven processes in these "black box" engineered treatment systems. To improve this unders...

  4. N₂O accumulation from denitrification under different temperatures.

    PubMed

    Poh, Leong Soon; Jiang, Xie; Zhang, Zhongbo; Liu, Yu; Ng, Wun Jern; Zhou, Yan

    2015-11-01

    The effects of temperature on nitrous oxide (N2O) accumulation during denitrification and denitritation were investigated. Batch experiments were performed to measure N2O accumulation at 25 and 35 °C. More N2O accumulation was observed during denitritation at the higher temperature as compared with full denitrification and low temperature tests. The highest nitrite concentration tested in this study (25 mg/L NO2 (-)N and pH 8.0) did not show inhibitory effect on N2O reduction. It was found that the major cause of more N2O accumulation during denitrification at higher temperature was due to higher N2O production rate and lower N2O solubility. Specific nitrate, nitrite, and N2O reduction rates increased 62, 61, and 41 %, respectively, when temperature rose from 25 to 35 °C. The decrease of N2O solubility in mixed liquor at 35 °C (when compared to 25 °C) resulted in faster diffusing rate of N2O from liquid to gas phase. It was also more difficult for gas phase N2O to be re-dissolved. The diffused N2O was then accumulated in the headspace, which was not available for denitrification by denitrifiers. The results of this study suggest higher temperature may worsen N2O emission from wastewater treatment plants (WWTPs).

  5. Energetics of Respiration and Oxidative Phosphorylation in Mycobacteria

    PubMed Central

    Hards, Kiel; Vilchèze, Catherine; Hartman, Travis; Berney, Michael

    2014-01-01

    Mycobacteria inhabit a wide range of intracellular and extracellular environments. Many of these environments are highly dynamic and therefore mycobacteria are faced with the constant challenge of redirecting their metabolic activity to be commensurate with either replicative growth or a non-replicative quiescence. A fundamental feature in this adaptation is the ability of mycobacteria to respire, regenerate reducing equivalents and generate ATP via oxidative phosphorylation. Mycobacteria harbor multiple primary dehydrogenases to fuel the electron transport chain and two terminal respiratory oxidases, an aa3-type cytochrome c oxidase and cytochrome bd-type menaquinol oxidase, are present for dioxygen reduction coupled to the generation of a protonmotive force. Hypoxia leads to the downregulation of key respiratory complexes, but the molecular mechanisms regulating this expression are unknown. Despite being obligate aerobes, mycobacteria have the ability to metabolize in the absence of oxygen and a number of reductases are present to facilitate the turnover of reducing equivalents under these conditions (e.g. nitrate reductase, succinate dehydrogenase/fumarate reductase). Hydrogenases and ferredoxins are also present in the genomes of mycobacteria suggesting the ability of these bacteria to adapt to an anaerobic-type of metabolism in the absence of oxygen. ATP synthesis by the membrane-bound F1FO-ATP synthase is essential for growing and non-growing mycobacteria and the enzyme is able to function over a wide range of protonmotive force values (aerobic to hypoxic). The discovery of lead compounds that target respiration and oxidative phosphorylation in Mycobacterium tuberculosis highlights the importance of this area for the generation of new front line drugs to combat tuberculosis. PMID:25346874

  6. Energetics of Respiration and Oxidative Phosphorylation in Mycobacteria.

    PubMed

    Cook, Gregory M; Hards, Kiel; Vilchèze, Catherine; Hartman, Travis; Berney, Michael

    2014-06-01

    Mycobacteria inhabit a wide range of intracellular and extracellular environments. Many of these environments are highly dynamic and therefore mycobacteria are faced with the constant challenge of redirecting their metabolic activity to be commensurate with either replicative growth or a non-replicative quiescence. A fundamental feature in this adaptation is the ability of mycobacteria to respire, regenerate reducing equivalents and generate ATP via oxidative phosphorylation. Mycobacteria harbor multiple primary dehydrogenases to fuel the electron transport chain and two terminal respiratory oxidases, an aa3 -type cytochrome c oxidase and cytochrome bd-type menaquinol oxidase, are present for dioxygen reduction coupled to the generation of a protonmotive force. Hypoxia leads to the downregulation of key respiratory complexes, but the molecular mechanisms regulating this expression are unknown. Despite being obligate aerobes, mycobacteria have the ability to metabolize in the absence of oxygen and a number of reductases are present to facilitate the turnover of reducing equivalents under these conditions (e.g. nitrate reductase, succinate dehydrogenase/fumarate reductase). Hydrogenases and ferredoxins are also present in the genomes of mycobacteria suggesting the ability of these bacteria to adapt to an anaerobic-type of metabolism in the absence of oxygen. ATP synthesis by the membrane-bound F1FO-ATP synthase is essential for growing and non-growing mycobacteria and the enzyme is able to function over a wide range of protonmotive force values (aerobic to hypoxic). The discovery of lead compounds that target respiration and oxidative phosphorylation in Mycobacterium tuberculosis highlights the importance of this area for the generation of new front line drugs to combat tuberculosis. PMID:25346874

  7. Fermentation and anaerobic respiration by Rhodospirillum rubrum and Rhodopseudomonas capsulata

    SciTech Connect

    Schultz, J.E.; Weaver, P.F.

    1982-01-01

    Rhodospirillum rubrum and Rhodopseudomonas capsulata were able to grow anaerobically in the dark either by a strict mixed-acid fermentation of sugars or, in the presence of an appropriate electron acceptor, by an energy-linked anaerobic respiration. Both species fermented fructose without the addition of accessory oxidants, but required the initial presence of bicarbonate before fermentative growth could begin. Major products of R. rubrum fermentation were succinate, acetate, propionate, formate, hydrogen, and carbon dioxide; R. capsulata produced major amounts of lactate, acetate, succinate, hydrogen, and carbon dioxide. R. rubrum and R. capsulata were also capable of growing strictly through anaerobic, respiratory mechanisms. Nonfermentable substrates, such as succinate, malate, or acetate, supported growth only in the presence of an electron acceptor such as dimethyl sulfoxide or trimethylamine oxide. Carbon dioxide and succinate plus dimethyl sulfoxide were produced during growth of R. rubrum and R. capsulata on succinate plus dimethyl sulfoxides. Molar growth yields from cultures grown anaerobically in the dark on fructose plus dimethyl sulfoxide were 3.8 to 4.6 times higher than values obtained from growth on fructose alone and were 56 to 6o% of thevalues obtained from aerobic, respiratory growth with fructose. Likewise, molar growth yields from anaerobic, respiratory growth conditions with succinate plus dimethyl sulfoxide were 51 to 54% of the values obtained from aerobic, respiratory growth with succinate. The data indicate that dimethyl sulfoxide or trimethylamine oxide as a terminal oxidant is approximately 33 to 41% as efficient as O/sub 2/ in conserving energy through electron transport-linked respiration.

  8. Fermentation and Anaerobic Respiration by Rhodospirillum rubrum and Rhodopseudomonas capsulata

    PubMed Central

    Schultz, J. E.; Weaver, P. F.

    1982-01-01

    Rhodospirillum rubrum and Rhodopseudomonas capsulata were able to grow anaerobically in the dark either by a strict mixed-acid fermentation of sugars or, in the presence of an appropriate electron acceptor, by an energy-linked anaerobic respiration. Both species fermented fructose without the addition of accessory oxidants, but required the initial presence of bicarbonate before fermentative growth could begin. Major products of R. rubrum fermentation were succinate, acetate, propionate, formate, hydrogen, and carbon dioxide; R. capsulata produced major amounts of lactate, acetate, succinate, hydrogen, and carbon dioxide. R. rubrum and R. capsulata were also capable of growing strictly through anaerobic, respiratory mechanisms. Nonfermentable substrates, such as succinate, malate, or acetate, supported growth only in the presence of an electron acceptor such as dimethyl sulfoxide or trimethylamine oxide. Carbon dioxide and dimethyl sulfide were produced during growth of R. rubrum and R. capsulata on succinate plus dimethyl sulfoxide. Molar growth yields from cultures grown anaerobically in the dark on fructose plus dimethyl sulfoxide were 3.8 to 4.6 times higher than values obtained from growth on fructose alone and were 56 to 60% of the values obtained from aerobic, respiratory growth with fructose. Likewise, molar growth yields from anaerobic, respiratory growth conditions with succinate plus dimethyl sulfoxide were 51 to 54% of the values obtained from aerobic, respiratory growth with succinate. The data indicate that dimethyl sulfoxide or trimethylamine oxide as a terminal oxidant is approximately 33 to 41% as efficient as O2 in conserving energy through electron transport-linked respiration. PMID:6798016

  9. Simulated workplace performance of N95 respirators.

    PubMed

    Coffey, C C; Campbell, D L; Zhuang, Z

    1999-01-01

    During July 1995 the National Institute for Occupational Safety and Health (NIOSH) began to certify nine new classes of particulate respirators. To determine the level of performance of these respirators, NIOSH researchers conducted a study to (1) measure the simulated workplace performance of 21 N95 respirator models, (2) determine whether fit-testing affected the performance, and (3) investigate the effect of varying fit-test pass/fail criteria on respirator performance. The performance of each respirator model was measured by conducting 100 total penetration tests. The performance of each respirator model was then estimated by determining the 95th percentile of the total penetration through the respirator (i.e., 95% of wearers of that respirator can expect to have a total penetration value below the 95th percentile penetration value). The 95th percentile of total penetrations for each respirator without fit-testing ranged from 6 to 88%. The 95th percentile of total penetrations for all the respirators combined was 33%, which exceeds the amount of total penetration (10%) normally expected of a half-mask respirator. When a surrogate fit test (1% criterion) was applied to the data, the 95th percentile of total penetrations for each respirator decreased to 1 to 16%. The 95th percentile of total penetrations for all the respirators combined was only 4%. Therefore, fit-testing of N95 respirators is necessary to ensure that the user receives the expected level of protection. The study also found that respirator performance was dependent on the value of the pass/fail criterion used in the surrogate fit-test. PMID:10529991

  10. Influence of biochar on soil pore structure and denitrification

    NASA Astrophysics Data System (ADS)

    Maenhout, Peter; Sleutel, Steven; Ameloot, Nele; De Neve, Stefaan

    2014-05-01

    Incorporation of biochar into soils has frequently been found to reduce soil emission of the greenhouse gas N2O, formed as an intermediate during microbial denitrification. The exact mechanism that regulates N2O emission reduction after biochar incorporation is still unknown and diverse hypotheses on either chemical, physical or biological controls over soil denitrification exist. The porous structure of biochar may directly and indirectly influence the soil pore structure upon its incorporation. Firstly biochar may increase soil aeration and thereby reduce denitrification which requires an anaerobic atmosphere to continue. In order to investigate this hypothesis we incorporated 4 biochar types in a sandy loam soil and collected undisturbed soil cores after 8 months of field incorporation. We then crushed half of the soil cores and replaced them. We followed N2O emissions from undisturbed and disturbed biochar amended soil cores by GC headspace analysis. From the disturbed soil cores no emission reduction was expected because soil pore structure was severely disrupted. However, both disturbed and undisturbed soil cores showed emission reductions when compared to the soil cores without biochar amendment. This allowed us to reject the hypothesis that biochar would affect soil denitrification through increased soil aeration. We moved to investigate a second hypothesis, viz. 'Through the retention of water in its finer pores, biochar could create local anaerobic 'denitrification hot spots' in soils. It could be hypothesized that the final further reduction of N2O into N2 is stimulated. We tested this hypothesis by comparing N2+N2O (acetylene inhibition) and N2O emissions from undisturbed soil cores with or without biochar amended, at 70 and 90 % WFPS. At 70% WFPS we expected higher N2 emissions in biochar amended soils compared to the unamended control cores, through the action of anaerobic hot spots in biochar. In contrast, at 90% WFPS anaerobicity would be general in

  11. Elucidation of denitrification mechanism in karstic Ryukyu limestone aquifer

    NASA Astrophysics Data System (ADS)

    Hijikawa, K.

    2014-12-01

    Nitrate (NO3-) concentrations in public water supplies have risen above acceptable levels in many areas of the world including Japan, largely as a result of contamination by human and animal waste and overuse of fertilizers. A previous study has characterized nitrate concentrations in groundwater in this area is a higher than the upper value (44mgL-1) of environmental quality criteria on one hands. On the other hand, there exists points where the concentration of nitric acid is not detected, which suggests the possibility of denitrification. During early 2000, a new analytical procedure for nitrate isotopic measurement, termed the "denitrifier method", was established. With the development of the nitrate isotope tracer method, much research has been reported detailing sources of groundwater nitrate and denitrification mechanisms. This study presents a pilot case study (in the southern part of Okinawa Main Island, Japan, where Ryukyu limestone is extensively distributed) using the combined stable isotope ratios of major elements (C, N and S) as net recorders of the biogeochemical reactions with the aim of elucidation of denitrification mechanism in Ryukyu limestone aquifer. As a result, significant decreases in nitrate concentrations due to denitrification were observed in groundwater at some locations, which induced increases in isotope ratios up to 59.7‰ for δ15NNO3. These points of groundwater were located above the cutoff wall of the underground dam and near the fault. It is considered that the residence time of the groundwater is longer than the other points at these denitrification points, and that reduction condition tends to be formed in the groundwater. However, the rapid rise of the groundwater level due to rainfall is likely to occur in the Ryukyu limestone aquifer, where the ground water was found to have changed dynamically from the reduction condition to the oxidation condition which a denitrification (has not occured)does not occur. Moreover, the

  12. The negligible effect of bed form migration on denitrification in hyporheic zones of permeable sediments

    NASA Astrophysics Data System (ADS)

    Kessler, Adam J.; Cardenas, M. Bayani; Cook, Perran L. M.

    2015-03-01

    Bed form celerity, the migration rate of ripples along a sediment bed, has previously been shown to have dramatic effects on oxygen distribution and transport within the hyporheic zone of permeable sediments. This has the potential to influence denitrification rates—in particular by increasing the coupling of nitrification and denitrification. To further understand this, we numerically modeled nitrogen cycling under migrating ripples. While the simulated oxygen profiles match with expected behavior, almost no effect on denitrification or coupled nitrification-denitrification was observed with increasing celerity. Instead, denitrification rates were dominantly controlled by the flow velocity of water overlying the sediment.

  13. The Terminal Oxidase Cytochrome bd Promotes Sulfide-resistant Bacterial Respiration and Growth.

    PubMed

    Forte, Elena; Borisov, Vitaliy B; Falabella, Micol; Colaço, Henrique G; Tinajero-Trejo, Mariana; Poole, Robert K; Vicente, João B; Sarti, Paolo; Giuffrè, Alessandro

    2016-01-01

    Hydrogen sulfide (H2S) impairs mitochondrial respiration by potently inhibiting the heme-copper cytochrome c oxidase. Since many prokaryotes, including Escherichia (E.) coli, generate H2S and encounter high H2S levels particularly in the human gut, herein we tested whether bacteria can sustain sulfide-resistant O2-dependent respiration. E. coli has three respiratory oxidases, the cyanide-sensitive heme-copper bo3 enzyme and two bd oxidases much less sensitive to cyanide. Working on the isolated enzymes, we found that, whereas the bo3 oxidase is inhibited by sulfide with half-maximal inhibitory concentration IC50 = 1.1 ± 0.1 μM, under identical experimental conditions both bd oxidases are insensitive to sulfide up to 58 μM. In E. coli respiratory mutants, both O2-consumption and aerobic growth proved to be severely impaired by sulfide when respiration was sustained by the bo3 oxidase alone, but unaffected by ≤200 μM sulfide when either bd enzyme acted as the only terminal oxidase. Accordingly, wild-type E. coli showed sulfide-insensitive respiration and growth under conditions favouring the expression of bd oxidases. In all tested conditions, cyanide mimicked the functional effect of sulfide on bacterial respiration. We conclude that bd oxidases promote sulfide-resistant O2-consumption and growth in E. coli and possibly other bacteria. The impact of this discovery is discussed. PMID:27030302

  14. The Terminal Oxidase Cytochrome bd Promotes Sulfide-resistant Bacterial Respiration and Growth

    PubMed Central

    Forte, Elena; Borisov, Vitaliy B.; Falabella, Micol; Colaço, Henrique G.; Tinajero-Trejo, Mariana; Poole, Robert K.; Vicente, João B.; Sarti, Paolo; Giuffrè, Alessandro

    2016-01-01

    Hydrogen sulfide (H2S) impairs mitochondrial respiration by potently inhibiting the heme-copper cytochrome c oxidase. Since many prokaryotes, including Escherichia (E.) coli, generate H2S and encounter high H2S levels particularly in the human gut, herein we tested whether bacteria can sustain sulfide-resistant O2-dependent respiration. E. coli has three respiratory oxidases, the cyanide-sensitive heme-copper bo3 enzyme and two bd oxidases much less sensitive to cyanide. Working on the isolated enzymes, we found that, whereas the bo3 oxidase is inhibited by sulfide with half-maximal inhibitory concentration IC50 = 1.1 ± 0.1 μM, under identical experimental conditions both bd oxidases are insensitive to sulfide up to 58 μM. In E. coli respiratory mutants, both O2-consumption and aerobic growth proved to be severely impaired by sulfide when respiration was sustained by the bo3 oxidase alone, but unaffected by ≤200 μM sulfide when either bd enzyme acted as the only terminal oxidase. Accordingly, wild-type E. coli showed sulfide-insensitive respiration and growth under conditions favouring the expression of bd oxidases. In all tested conditions, cyanide mimicked the functional effect of sulfide on bacterial respiration. We conclude that bd oxidases promote sulfide-resistant O2-consumption and growth in E. coli and possibly other bacteria. The impact of this discovery is discussed. PMID:27030302

  15. Tumorigenicity of hypoxic respiring cancer cells revealed by a hypoxia–cell cycle dual reporter

    PubMed Central

    Le, Anne; Stine, Zachary E.; Nguyen, Christopher; Afzal, Junaid; Sun, Peng; Hamaker, Max; Siegel, Nicholas M.; Gouw, Arvin M.; Kang, Byung-hak; Yu, Shu-Han; Cochran, Rory L.; Sailor, Kurt A.; Song, Hongjun; Dang, Chi V.

    2014-01-01

    Although aerobic glycolysis provides an advantage in the hypoxic tumor microenvironment, some cancer cells can also respire via oxidative phosphorylation. These respiring (“non-Warburg”) cells were previously thought not to play a key role in tumorigenesis and thus fell from favor in the literature. We sought to determine whether subpopulations of hypoxic cancer cells have different metabolic phenotypes and gene-expression profiles that could influence tumorigenicity and therapeutic response, and we therefore developed a dual fluorescent protein reporter, HypoxCR, that detects hypoxic [hypoxia-inducible factor (HIF) active] and/or cycling cells. Using HEK293T cells as a model, we identified four distinct hypoxic cell populations by flow cytometry. The non-HIF/noncycling cell population expressed a unique set of genes involved in mitochondrial function. Relative to the other subpopulations, these hypoxic “non-Warburg” cells had highest oxygen consumption rates and mitochondrial capacity consistent with increased mitochondrial respiration. We found that these respiring cells were unexpectedly tumorigenic, suggesting that continued respiration under limiting oxygen conditions may be required for tumorigenicity. PMID:25114222

  16. Impact of Anodic Respiration on Biopolymer Production and Consequent Membrane Fouling.

    PubMed

    Ishizaki, So; Terada, Kotaro; Miyake, Hiroshi; Okabe, Satoshi

    2016-09-01

    Microbial fuel cells (MFCs) have recently been integrated with membrane bioreactors (MBRs) for wastewater treatment and energy recovery. However, the impact of integration of the two reactors on membrane fouling of MBR has not been reported yet. In this study, MFCs equipped with different external resistances (1-10 000 ohm) were operated, and membrane-fouling potentials of the MFC anode effluents were directly measured to study the impact of anodic respiration by exoelectrogens on membrane fouling. It was found that although the COD removal efficiency was comparable, the fouling potential was significantly reduced due to less production of biopolymer (a major foulant) in MFCs equipped with lower external resistance (i.e., with higher current generation) as compared with aerobic respiration. Furthermore, it was confirmed that Geobacter sulfurreducens strain PCA, a dominant exoelectrogen in anode biofilms of MFCs in this study, produced less biopolymer under anodic respiration condition than fumarate (anaerobic) respiration condition, resulting in lower membrane-fouling potential. Taken together, anodic respiration can mitigate membrane fouling of MBR due to lower biopolymer production, suggesting that development of an electrode-assisted MBR (e-MBR) without aeration is feasible.

  17. [Cause of the appearance of cyanide-resistant respiration in the yeast Candida lipolytica].

    PubMed

    Akimenko, V K; Medentsev, A G

    1980-08-01

    Changes in the activity of the cell respiration of the yeast Candida lipolytica and its ATP, ADP, NADH, NAD+ pools during the development of the cyanide-resistant respiration were studied. A change-over of the yeast culture to the stationary growth phase conditioned by glucose exhaustion or aerobic incubation of the resting cells in the exponential growth phase without the exogenous carbon source were shown to be accompanied by: 1) decrease of the rate of oxygen consumption; 2) appearance of the cyanide-resistant respiration; 3) appearance of the benzhydroxamic acid-sensitive respiration; 4) appearance of stimulating dinitrophenol action on the rate of oxygen consumption; 5) increase in the ATP content and decrease of the ADP content in the cells. It was concluded that the appearance of the cyanide-resistant respiration is induced by the decrease of the activity of the respiratory chain due to the increase of the ATP concentration and the decrease of the ADP concentration in yeast cells. The functioning of the cyanide-resistant pathway of the electron transfer is one of the ways of NAD+ pool regulation in yeast cells.

  18. Impact of Anodic Respiration on Biopolymer Production and Consequent Membrane Fouling.

    PubMed

    Ishizaki, So; Terada, Kotaro; Miyake, Hiroshi; Okabe, Satoshi

    2016-09-01

    Microbial fuel cells (MFCs) have recently been integrated with membrane bioreactors (MBRs) for wastewater treatment and energy recovery. However, the impact of integration of the two reactors on membrane fouling of MBR has not been reported yet. In this study, MFCs equipped with different external resistances (1-10 000 ohm) were operated, and membrane-fouling potentials of the MFC anode effluents were directly measured to study the impact of anodic respiration by exoelectrogens on membrane fouling. It was found that although the COD removal efficiency was comparable, the fouling potential was significantly reduced due to less production of biopolymer (a major foulant) in MFCs equipped with lower external resistance (i.e., with higher current generation) as compared with aerobic respiration. Furthermore, it was confirmed that Geobacter sulfurreducens strain PCA, a dominant exoelectrogen in anode biofilms of MFCs in this study, produced less biopolymer under anodic respiration condition than fumarate (anaerobic) respiration condition, resulting in lower membrane-fouling potential. Taken together, anodic respiration can mitigate membrane fouling of MBR due to lower biopolymer production, suggesting that development of an electrode-assisted MBR (e-MBR) without aeration is feasible. PMID:27427998

  19. Effect of respiration and manganese on oxidative stress resistance of Lactobacillus plantarum WCFS1.

    PubMed

    Watanabe, Masayuki; van der Veen, Stijn; Nakajima, Hadjime; Abee, Tjakko

    2012-01-01

    Lactobacillus plantarum is a facultatively anaerobic bacterium that can perform respiration under aerobic conditions in the presence of haem, with vitamin K2 acting as a source of menaquinone. We investigated growth performance and oxidative stress resistance of Lb. plantarum WCFS1 cultures grown in de Man, Rogosa and Sharpe (MRS) medium without and with added manganese under fermentative, aerobic, aerobic with haem, and respiratory conditions. Previous studies showed that Lb. plantarum WCFS1 lacks a superoxide dismutase and requires high levels of manganese for optimum fermentative and aerobic growth. In this study, respiratory growth with added manganese resulted in significantly higher cell densities compared to the other growth conditions, while without manganese added, similar but lower cell densities were reached. Notably, cells derived from the respiratory cultures showed the highest hydrogen peroxide resistance in all conditions tested, although similar activity levels of haem-dependent catalase were detected in cells grown under aerobic conditions with haem. These results indicate that oxidative stress resistance of Lb. plantarum is affected by respiratory growth, growth phase, haem and manganese. As levels of haem and manganese can differ considerably in the raw materials used in fermentation processes, including those of milk, meat and vegetables, the insight gained here may provide tools to increase the performance and robustness of starter bacteria.

  20. Factors controlling denitrification of mudflat sediments in Ariake Bay, Japan.

    PubMed

    Koriyama, M; Koga, A; Seguchi, M; Ishitani, T

    2016-02-01

    To investigate the seasonal variation of denitrification rate (DR) and clarify the controlling factors of denitrification in the mudflat sediments of Ariake Bay, we conducted field surveys biweekly each month from April 2006 to January 2008. NH4(+)-N porewater concentration increased from summer to autumn due to the organic material mineralization under higher sediment temperatures. The seasonal pattern of NH4 (+)-N flux between sediments and overlying water interface indicated that the mudflat sediments were a source of NH4(+)-N in summer. NO3(-)+NO2(-)-N porewater concentrations were low, ranging from 0.53 to 11.46 μM, and mudflat sediments were sinks of NO3(-)+NO2(-)-N throughout the year. The mean number of denitrifiers tended to increase in July-September (2188-75,057 MPN g(-1)) and to decrease in March-May (500-3740 MPN g(-1)). DR tended to increase in summer, ranging from 76.03 to 990.21 μmol m(-2) day(-1), and to decrease in winter, ranging from 25.01 to 206.07 μmol m(-2) day(-1). There was no significant correlation between DR and denitrifier number. Environmental factors influencing DR during the investigation period were determined by multiple regression analysis with the stepwise method. The results indicated that NO3(-)+NO2(-)-N flux was an important factor in denitrification of mudflat sediments in Ariake Bay. Denitrification was depended on nitrate diffusing from overlying water into sediments under reduced sediment conditions during summer-mid-autumn. On the other hand, in late autumn-winter at Eh>+200 mV and sediment temperature >10 °C, nitrate produced by sediment nitrification was thought to be denitrified subsequently; that is, the coupled nitrification-denitrification may have taken place in the upper layer of mudflat sediments. PMID:26780415

  1. Denitrification gene expression in clay-soil bacterial community

    NASA Astrophysics Data System (ADS)

    Pastorelli, R.; Landi, S.

    2009-04-01

    Our contribution in the Italian research project SOILSINK was focused on microbial denitrification gene expression in Mediterranean agricultural soils. In ecosystems with high inputs of nitrogen, such as agricultural soils, denitrification causes a net loss of nitrogen since nitrate is reduced to gaseous forms, which are released into the atmosphere. Moreover, incomplete denitrification can lead to emission of nitrous oxide, a potent greenhouse gas which contributes to global warming and destruction of ozone layer. A critical role in denitrification is played by microorganisms and the ability to denitrify is widespread among a variety of phylogenetically unrelated organisms. Data reported here are referred to wheat cultivation in a clay-rich soil under different environmental impact management (Agugliano, AN, Italy). We analysed the RNA directly extracted from soil to provide information on in situ activities of specific populations. The expression of genes coding for two nitrate reductases (narG and napA), two nitrite reductases (nirS and nirK), two nitric oxide reductases (cnorB and qnorB) and nitrous oxide reductase (nosZ) was analyzed by reverse transcription (RT)-nested PCR. Only napA, nirS, nirK, qnorB and nosZ were detected and fragments sequenced showed high similarity with the corresponding gene sequences deposited in GenBank database. These results suggest the suitability of the method for the qualitative detection of denitrifying bacteria in environmental samples and they offered us the possibility to perform the denaturing gradient gel electrophoresis (DGGE) analyzes for denitrification genes.. Earlier conclusions showed nirK gene is more widely distributed in soil environment than nirS gene. The results concerning the nosZ expression indicated that microbial activity was clearly present only in no-tilled and no-fertilized soils.

  2. O 2 reduction and denitrification rates in shallow aquifers

    USGS Publications Warehouse

    Tesoriero, A.J.; Puckett, L.J.

    2011-01-01

    O 2 reduction and denitrification rates were determined in shallow aquifers of 12 study areas representing a wide range in sedimentary environments and climatic conditions. Zero-and first-order rates were determined by relating reactant or product concentrations to apparent groundwater age. O 2 reduction rates varied widely within and between sites, with zero-order rates ranging from <3 ??mol L -1 yr -1 to more than 140 ??mol L -1 yr -1 and first-order rates ranging from 0.02 to 0.27 yr -1. Moderate denitrification rates (10-100 ??mol N L -1 yr -1; 0.06-0.30 yr -1) were observed in most areas with O 2 concentrations below 60 mol L -1, while higher rates (>100 mol N L -1 yr -1; >0.36 yr -1) occur when changes in lithology result in a sharp increase in the supply of electron donors. Denitrification lag times (i.e., groundwater travel times prior to the onset of denitrification) ranged from <20 yr to >80 yr. The availability of electron donors is indicated as the primary factor affecting O 2 reduction rates. Concentrations of dissolved organic carbon (DOC) and/or sulfate (an indicator of sulfide oxidation) were positively correlated with groundwater age at sites with high O 2 reduction rates and negatively correlated at sites with lower rates. Furthermore, electron donors from recharging DOC are not sufficient to account for appreciable O 2 and nitrate reduction. These relations suggest that lithologic sources of DOC and sulfides are important sources of electrons at these sites but surface-derived sources of DOC are not. A review of published rates suggests that denitrification tends to occur more quickly when linked with sulfide oxidation than with carbon oxidation. copyright 2011 by the American Geophysical Union.

  3. Regional oxygen reduction and denitrification rates, San Joaquin Valley, USA

    NASA Astrophysics Data System (ADS)

    Green, C. T.; Jurgens, B. C.; Zhang, Y.; Starn, J. J.; Visser, A.; Singleton, M. J.; Esser, B. K.

    2015-12-01

    Rates of oxygen and nitrate reduction are key factors in determining the chemical evolution of groundwater. Little is known about how these rates vary in regional groundwater settings, as few studies have focused on regional datasets with multiple tracers and methods of analysis that account for effects of mixed residence times on apparent reaction rates. This study provides insight into residence times and rates of O2 reduction and denitrification using a novel approach of multi-model residence time distributions (RTDs) applied to a data set of atmospheric tracers of groundwater age and geochemical data from 141 well samples in the Central Eastern San Joaquin Valley, CA. The residence time distribution approach accounts for mixtures of residence times in a single sample to provide estimates of in-situ rates. Tracers included SF6, CFCs, 3H, He from 3H, 14C, and terrigenic He. Parameter estimation and multi-model averaging were used to establish RTDs with lower error variance than produced by individual RTD models. The set of multi-model RTDs was used in combination with NO3- and dissolved gas data to estimate zero order and first order rates of O2 reduction and denitrification. Results indicated that these rates followed approximately log-normal distributions. Rates of O2 reduction and denitrification were correlated and, on an electron milliequivalent basis, denitrification rates tended to exceed O2 reduction rates. Results indicate that the multi-model approach can improve estimation of age distributions, and that, because of the correlations, relatively easily measured O2 rates can provide information about trends in denitrification rates, which are more difficult to measure.

  4. Denitrification in anaerobic lagoons used to treat swine wastewater.

    PubMed

    Hunt, P G; Matheny, T A; Ro, K S; Vanotti, M B; Ducey, T F

    2010-01-01

    Anaerobic lagoons are commonly used for the treatment of swine wastewater. Although these lagoons were once thought to be relatively simple, their physical, chemical, and biological processes are very complex. This study of anaerobic lagoons had two objectives: (i) to quantify denitrification enzyme activity (DEA) and (ii) to evaluate the influence of lagoon characteristics on the DEA. The DEA was measured by the acetylene inhibition method. Wastewater samples and physical and chemical measurements were taken from the wastewater column of nine anaerobic swine lagoons from May 2006 to May 2009. These lagoons were typical for anaerobic swine lagoons in the Carolinas relative to their size, operation, and chemical and physical characteristics. Their mean value for DEA was 87 mg N2O-N m(-3) d(-1). In a lagoon with 2-m depth, this rate of DEA would be compatible with 1.74 kg N ha(-1) d(-1) When nonlimiting nitrate was added, the highest DEA was compatible with 4.38 kg N ha(-1) d(-1) loss. Using stepwise regression for this treatment, the lagoon characteristics (i.e., soluble organic carbon, total nitrogen, temperature, and NO3-N) provided a final step model R2 of 0.69. Nitrous oxide from incomplete denitrification was not a significant part of the system nitrogen balance. Although alternate pathways of denitrification may exist within or beneath the wastewater column, this paper documents the lack of sufficient denitrification enzyme activity within the wastewater column of these anaerobic lagoons to support large N2 gas losses via classical nitrification and denitrification.

  5. O2 reduction and denitrification rates in shallow aquifers

    NASA Astrophysics Data System (ADS)

    Tesoriero, Anthony J.; Puckett, Larry J.

    2011-12-01

    O2 reduction and denitrification rates were determined in shallow aquifers of 12 study areas representing a wide range in sedimentary environments and climatic conditions. Zero- and first-order rates were determined by relating reactant or product concentrations to apparent groundwater age. O2 reduction rates varied widely within and between sites, with zero-order rates ranging from <3 μmol L-1 yr-1 to more than 140 μmol L-1 yr-1 and first-order rates ranging from 0.02 to 0.27 yr-1. Moderate denitrification rates (10-100 μmol N L-1 yr-1; 0.06-0.30 yr-1) were observed in most areas with O2 concentrations below 60 μmol L-1, while higher rates (>100 μmol N L-1 yr-1; >0.36 yr-1) occur when changes in lithology result in a sharp increase in the supply of electron donors. Denitrification lag times (i.e., groundwater travel times prior to the onset of denitrification) ranged from <20 yr to >80 yr. The availability of electron donors is indicated as the primary factor affecting O2 reduction rates. Concentrations of dissolved organic carbon (DOC) and/or sulfate (an indicator of sulfide oxidation) were positively correlated with groundwater age at sites with high O2 reduction rates and negatively correlated at sites with lower rates. Furthermore, electron donors from recharging DOC are not sufficient to account for appreciable O2 and nitrate reduction. These relations suggest that lithologic sources of DOC and sulfides are important sources of electrons at these sites but surface-derived sources of DOC are not. A review of published rates suggests that denitrification tends to occur more quickly when linked with sulfide oxidation than with carbon oxidation.

  6. Permafrost collapse alters soil carbon stocks, respiration, CH4 , and N2O in upland tundra.

    PubMed

    Abbott, Benjamin W; Jones, Jeremy B

    2015-12-01

    Release of greenhouse gases from thawing permafrost is potentially the largest terrestrial feedback to climate change and one of the most likely to occur; however, estimates of its strength vary by a factor of thirty. Some of this uncertainty stems from abrupt thaw processes known as thermokarst (permafrost collapse due to ground ice melt), which alter controls on carbon and nitrogen cycling and expose organic matter from meters below the surface. Thermokarst may affect 20-50% of tundra uplands by the end of the century; however, little is known about the effect of different thermokarst morphologies on carbon and nitrogen release. We measured soil organic matter displacement, ecosystem respiration, and soil gas concentrations at 26 upland thermokarst features on the North Slope of Alaska. Features included the three most common upland thermokarst morphologies: active-layer detachment slides, thermo-erosion gullies, and retrogressive thaw slumps. We found that thermokarst morphology interacted with landscape parameters to determine both the initial displacement of organic matter and subsequent carbon and nitrogen cycling. The large proportion of ecosystem carbon exported off-site by slumps and slides resulted in decreased ecosystem respiration postfailure, while gullies removed a smaller portion of ecosystem carbon but strongly increased respiration and N2 O concentration. Elevated N2 O in gully soils persisted through most of the growing season, indicating sustained nitrification and denitrification in disturbed soils, representing a potential noncarbon permafrost climate feedback. While upland thermokarst formation did not substantially alter redox conditions within features, it redistributed organic matter into both oxic and anoxic environments. Across morphologies, residual organic matter cover, and predisturbance respiration explained 83% of the variation in respiration response. Consistent differences between upland thermokarst types may contribute to the

  7. Enhanced synergistic denitrification and chemical precipitation in a modified BAF process by using Fe2+.

    PubMed

    Wang, Hongjie; Dong, Wengyi; Li, Ting; Liu, Tongzhou

    2014-01-01

    A series of laboratory-scale experiments for examining the feasibility and suitability of using Fe(2+) as the precipitant dosed in the pre-denitrification stage of a modified BAF process employing simultaneous chemical precipitation of TSS and phosphorus were carried out. The effects of dosing Fe(2+) on effluent quality and sludge characteristics of the pre-denitrification stage were assessed with comparing to the cases of no additional chemical dosing and dosing Fe(3+). Results obtained demonstrated a sound performance of synergistic denitrification and chemical precipitation in pre-denitrification of the modified BAF process when dosing Fe salts, which showed enhanced by using Fe(2+) as the dosed precipitant in increasing the denitrification loading rate, exhibiting a better controlling of the residual phosphorus in pre-denitrification effluent, and improving sludge settleability. Dosing Fe salt showed no adverse impact in removing COD, but resulted in a relatively higher SS content in the pre-denitrification effluent.

  8. Effects of wetland plants on denitrification rates: a meta-analysis.

    PubMed

    Alldred, Mary; Baines, Stephen B

    2016-04-01

    Human activity is accelerating changes in biotic communities worldwide. Predicting impacts of these changes on ecosystem services such as denitrification, a process that mitigates the consequences of nitrogen pollution, remains one of the most important challenges facing ecologists. Wetlands especially are valued as important sites of denitrification, and wetland plants are expected to have differing effects on denitrification. We present the results of a meta-analysis, conducted on 419 published estimates of denitrification in wetlands dominated by different plant species. Plants increased denitrification rates by 55% on average. This effect varied significantly among communities as defined by the dominant plant species, but surprisingly did not differ substantially among methods for measuring denitrification or among types of wetlands. We conclude that mechanistically linking functional plant traits to denitrification will be key to predicting the role of wetlands in nitrogen mitigation in a changing world. PMID:27411242

  9. Mesoporous silica nanoparticles inhibit cellular respiration.

    PubMed

    Tao, Zhimin; Morrow, Matthew P; Asefa, Tewodros; Sharma, Krishna K; Duncan, Cole; Anan, Abhishek; Penefsky, Harvey S; Goodisman, Jerry; Souid, Abdul-Kader

    2008-05-01

    We studied the effect of two types of mesoporous silica nanoparticles, MCM-41 and SBA-15, on mitochondrial O 2 consumption (respiration) in HL-60 (myeloid) cells, Jurkat (lymphoid) cells, and isolated mitochondria. SBA-15 inhibited cellular respiration at 25-500 microg/mL; the inhibition was concentration-dependent and time-dependent. The cellular ATP profile paralleled that of respiration. MCM-41 had no noticeable effect on respiration rate. In cells depleted of metabolic fuels, 50 microg/mL SBA-15 delayed the onset of glucose-supported respiration by 12 min and 200 microg/mL SBA-15 by 34 min; MCM-41 also delayed the onset of glucose-supported respiration. Neither SBA-15 nor MCM-41 affected cellular glutathione. Both nanoparticles inhibited respiration of isolated mitochondria and submitochondrial particles.

  10. Effect of trifluoperazine on skeletal muscle mitochondrial respiration.

    PubMed

    Cheah, K S; Waring, J C

    1983-04-22

    The effect of trifluoperazine on the respiration of porcine liver and skeletal muscle mitochondria was investigated by polarographic and spectroscopic techniques. Low concentrations of trifluoperazine (88 nmol/mg protein) inhibited both the ADP- and Ca2+-stimulated oxidation of succinate, and reduced the values of the respiratory control index and the ADP/O and Ca2+/O ratio. High concentrations inhibited both succinate and ascorbate plus tetramethyl-p-phenylenediame (TMPD) oxidations, and uncoupler (carbonyl cyanide p-trifluromethoxyphenylhydrazone) and Ca2+-stimulated respiration. Porcine liver mitochondria were more sensitive to trifluoperazine than skeletal muscle mitochondria. Trifluoperazine inhibited the electron transport of succinate oxidation of skeletal muscle mitochondria within the cytochrome b-c1 and cytochrome c1-aa3 segments of the respiratory chain system. 233 nmol trifluoperazine/mg protein inhibited the aerobic steady-state reduction of cytochrome c1 by 92% with succinate as substrate, and of cytochrome c and cytochrome aa3 by 50-60% with ascorbate plus TMPD as electron donors. Trifluoperazine can thus inhibit calmodulin-independent reactions particularly when used at high concentrations.

  11. Nitrous oxide emissions and denitrification rates: A blueprint for smart management and remediation of agricultural landscapes.

    NASA Astrophysics Data System (ADS)

    Tomasek, A.; Hondzo, M.; Kozarek, J. L.

    2015-12-01

    Anthropogenic activities have greatly altered the global nitrogen cycle, especially in the agriculturally dominated Midwest, with severe consequences on human and aquatic health. Complete microbial denitrification can be viewed as a nitrogen sink, converting soluble nitrate into inert nitrogen gas. This research aims to quantify and correlate the driving parameters in microbial denitrification and explore the relationship to the abundance of denitrifying genes and the microbial communities at these sites. Denitrifying genes for each step in the denitrification process have been quantified. Data from a field site in Southern Minnesota has been collected throughout the season for two years enabling investigation into the temporal variability of denitrification. Data was collected at two cross-sections across the channel to determine the effect of bank location and moisture content on denitrification. Data were collected in an experimental basin in the summer of 2015 to determine the effect of flooding and benthic organic matter content and quality on microbial denitrification and nitrous oxide production. Four sediment types were investigated in three different flood regimes. After each raising or lowering of the water level, soil cores were taken to determine soil characteristics, the potential denitrification using the denitrification enzyme activity method, nitrous oxide production using a static core method, and the denitrifying gene abundance. Chambers were also deployed over each soil amendment in each flood regime to determine the nitrous oxide production over time. Results from these studies will convey a more complete explanation of denitrification and nitrous oxide production under varying environmental conditions. By determining the driving parameters for microbial denitrification, denitrification hot spots and hot moments can be created and enhanced. One potential consequence of increased denitrification is the possibility of incomplete denitrification

  12. Anaerobic respiration of Escherichia coli in the mouse intestine.

    PubMed

    Jones, Shari A; Gibson, Terri; Maltby, Rosalie C; Chowdhury, Fatema Z; Stewart, Valley; Cohen, Paul S; Conway, Tyrrell

    2011-10-01

    The intestine is inhabited by a large microbial community consisting primarily of anaerobes and, to a lesser extent, facultative anaerobes, such as Escherichia coli, which we have shown requires aerobic respiration to compete successfully in the mouse intestine (S. A. Jones et al., Infect. Immun. 75:4891-4899, 2007). If facultative anaerobes efficiently lower oxygen availability in the intestine, then their sustained growth must also depend on anaerobic metabolism. In support of this idea, mutants lacking nitrate reductase or fumarate reductase have extreme colonization defects. Here, we further explore the role of anaerobic respiration in colonization using the streptomycin-treated mouse model. We found that respiratory electron flow is primarily via the naphthoquinones, which pass electrons to cytochrome bd oxidase and the anaerobic terminal reductases. We found that E. coli uses nitrate and fumarate in the intestine, but not nitrite, dimethyl sulfoxide, or trimethylamine N-oxide. Competitive colonizations revealed that cytochrome bd oxidase is more advantageous than nitrate reductase or fumarate reductase. Strains lacking nitrate reductase outcompeted fumarate reductase mutants once the nitrate concentration in cecal mucus reached submillimolar levels, indicating that fumarate is the more important anaerobic electron acceptor in the intestine because nitrate is limiting. Since nitrate is highest in the absence of E. coli, we conclude that E. coli is the only bacterium in the streptomycin-treated mouse large intestine that respires nitrate. Lastly, we demonstrated that a mutant lacking the NarXL regulator (activator of the NarG system), but not a mutant lacking the NarP-NarQ regulator, has a colonization defect, consistent with the advantage provided by NarG. The emerging picture is one in which gene regulation is tuned to balance expression of the terminal reductases that E. coli uses to maximize its competitiveness and achieve the highest possible population in

  13. Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary.

    PubMed

    Eggleston, Erin M; Lee, Dong Y; Owens, Michael S; Cornwell, Jeffrey C; Crump, Byron C; Hewson, Ian

    2015-07-01

    Intense annual spring phytoplankton blooms and thermohaline stratification lead to anoxia in Chesapeake Bay bottom waters. Once oxygen becomes depleted in the system, microbial communities use energetically favourable alternative electron acceptors for respiration. The extent to which changes in respiration are reflected in community gene expression have only recently been investigated. Metatranscriptomes prepared from near-bottom water plankton over a 4-month time series in central Chesapeake Bay demonstrated changes consistent with terminal electron acceptor availability. The frequency of respiration-related genes in metatranscriptomes was examined by BLASTx against curated databases of genes intimately and exclusively involved in specific electron acceptor utilization pathways. The relative expression of genes involved in denitrification and dissimilatory nitrate reduction to ammonium were coincident with changes in nitrate, nitrite and ammonium concentrations. Dissimilatory iron and manganese reduction transcript ratios increase during anoxic conditions and corresponded with the highest soluble reactive phosphate and manganese concentrations. The sulfide concentration peaked in late July and early August and also matched dissimilatory sulfate reduction transcript ratios. We show that rather than abrupt transitions between terminal electron acceptors, there is substantial overlap in time and space of these various anaerobic respiratory processes in Chesapeake Bay.

  14. Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary.

    PubMed

    Eggleston, Erin M; Lee, Dong Y; Owens, Michael S; Cornwell, Jeffrey C; Crump, Byron C; Hewson, Ian

    2015-07-01

    Intense annual spring phytoplankton blooms and thermohaline stratification lead to anoxia in Chesapeake Bay bottom waters. Once oxygen becomes depleted in the system, microbial communities use energetically favourable alternative electron acceptors for respiration. The extent to which changes in respiration are reflected in community gene expression have only recently been investigated. Metatranscriptomes prepared from near-bottom water plankton over a 4-month time series in central Chesapeake Bay demonstrated changes consistent with terminal electron acceptor availability. The frequency of respiration-related genes in metatranscriptomes was examined by BLASTx against curated databases of genes intimately and exclusively involved in specific electron acceptor utilization pathways. The relative expression of genes involved in denitrification and dissimilatory nitrate reduction to ammonium were coincident with changes in nitrate, nitrite and ammonium concentrations. Dissimilatory iron and manganese reduction transcript ratios increase during anoxic conditions and corresponded with the highest soluble reactive phosphate and manganese concentrations. The sulfide concentration peaked in late July and early August and also matched dissimilatory sulfate reduction transcript ratios. We show that rather than abrupt transitions between terminal electron acceptors, there is substantial overlap in time and space of these various anaerobic respiratory processes in Chesapeake Bay. PMID:25470994

  15. Denitrification capacity and greenhouse gas emissions of soils in channelized and restored reaches along an Alpine river corridor

    NASA Astrophysics Data System (ADS)

    Shrestha, Juna; Niklaus, Pascal; Samaritani, Emanuela; Frossard, Emmanuel; Tockner, Klement; Luster, Jörg

    2010-05-01

    In order to assess the effects of river restoration on water and air quality, the biogeochemical functions of channelized and restored river reaches have to be quantified. The objective of this study was to compare denitrification potential and greenhouse gas emissions of functional processing zones (FPZ) in a channelized and a recently restored reach of the alpine river Thur in north-eastern Switzerland. The study was part of the project cluster RECORD of the ETH domain, Switzerland, which was initiated to increase the mechanistic understanding of coupled hydrological and ecological processes in river corridors. The denitrification potential represents an important aspect of the soil filter function related to water quality. Besides, it also contributes to the emission of greenhouse gases. Extensively used pasture growing on a sandy loam is the characteristic FPZ of the channelized section. The restored section encompasses five FPZ: (i) bare gravel bars sparsely colonized by plants, (ii) gravel bars densely colonized by grass (mainly canary reed grass with up to 80 cm sandy deposits), (iii) mixed forest dominated by ash and maple, (iv) riparian forest dominated by willow (Salix alba), (v) older overbank sediments stabilized during restoration with young willows separating the forests from the river-gravel bar system (willow bush). The FPZ were sampled in January, April, August and October 2009. In addition, in June and July 2009 two flood events were monitored in the restored section with more frequent samplings. At each date, topsoil samples were collected in each FPZ (four replicates per samples) and analyzed for denitrifier enzyme activity (DEA). In addition, gas samples were taken in-situ using the closed chamber technique to measure soil respiration as well as N2O and CH4 fluxes. In all FPZ, the denitrification potential was mainly governed by soil moisture. It was highest in the willow forest exhibiting low spatial variability. The DEA in pasture, grass zone

  16. Optical tweezers and non-ratiometric fluorescent-dye-based studies of respiration in sperm mitochondria

    NASA Astrophysics Data System (ADS)

    Chen, Timothy; Shi, Linda Z.; Zhu, Qingyuan; Chandsawangbhuwana, Charlie; Berns, Michael W.

    2011-04-01

    The purpose of this study is to investigate how the mitochondrial membrane potential affects sperm motility using laser tweezers and a non-ratiometric fluorescent probe, DiOC6(3). A 1064 nm Nd:YVO4 continuous wave laser was used to trap motile sperm at a power of 450 mW in the trap spot. Using customized tracking software, the curvilinear velocity (VCL) and the escape force from the laser tweezers were measured. Human (Homo sapiens), dog (Canis lupis familiaris) and drill (Mandrillus leucophaeus) sperm were treated with DiOC6(3) to measure the membrane potential in the mitochondria-rich sperm midpieces. Sperm from all three species exhibited an increase in fluorescence when treated with the DiOC6(3). When a cyanide inhibitor (CCCP) of aerobic respiration was applied, sperm of all three species exhibited a reduction in fluorescence to pre-dye levels. With respect to VCL and escape force, the CCCP had no effect on dog or human sperm, suggesting a major reliance upon anaerobic respiration (glycolysis) for ATP in these two species. Based on the preliminary study on drill sperm, CCCP caused a drop in the VCL, suggesting potential reliance on both glycolysis and aerobic respiration for motility. The results demonstrate that optical trapping in combination with DiOC6(3) is an effective way to study sperm motility and energetics.

  17. [Modeling formation of aerobic granule and influence of hydrodynamic shear forces on granule diameter].

    PubMed

    Dong, Feng; Zhang, Han-Min; Yang, Feng-Lin

    2012-01-01

    A one-dimension aerobic granule mathematical model was established, basing on mathematical biofilm model and activated sludge model. The model was used to simulate simple aerobic granule process such as nutrients removal, granule diameter evolution, cycle performance as well as depth profiles of DO and biomass. The effluent NH4(+) -N concentration decreased as the modeling processed. The simulation effluent NO3(-)-N concentration decreased to 3 mg x L(-1) as the granules grew. While the granule diameter increased from 1.1 mm on day 30 to 2.5 mm on day 100, the TN removal efficiency increased from less than 10% to 91%. The denitrification capacity was believed to enhance because the anoxic zone would be enlarged with the increasing granule diameter. The simultaneous nitrification and denitrification occurred inside the big aerobic granules. The oxygen permeating depth increased with the consumption of substrate. It was about 100-200 microm at the beginning of the aeration phase, and it turned to near 800 microm at the end of reaction. The autotrophs (AOB and NOB) were mostly located at the out layer where the DO concentration was high. The heterotrophic bacteria were distributed through the whole granule. As hydrodynamic shear coefficient k(de) increased from 0.25 (m x d)(-1) to 5 (m x d)(-1), the granule diameter under steady state decreased form 3.5 mm to 1.8 mm. The granule size under the dynamic steady-state decreased with the increasing hydrodynamic shear force. The granule size could be controlled by adjusting aeration intensity. PMID:22452208

  18. Effects of stream restoration on denitrification in an urbanizing watershed.

    PubMed

    Kaushal, Sujay S; Groffman, Peter M; Mayer, Paul M; Striz, Elise; Gold, Arthur J

    2008-04-01

    Increased delivery of nitrogen due to urbanization and stream ecosystem degradation is contributing to eutrophication in coastal regions of the eastern United States. We tested whether geomorphic restoration involving hydrologic "reconnection" of a stream to its floodplain could increase rates of denitrification at the riparian-zone-stream interface of an urban stream in Baltimore, Maryland. Rates of denitrification measured using in situ 15N tracer additions were spatially variable across sites and years and ranged from undetectable to >200 microg N x (kg sediment)(-1) x d(-1). Mean rates of denitrification were significantly greater in the restored reach of the stream at 77.4 +/- 12.6 microg N x kg(-1) x d(-1) (mean +/- SE) as compared to the unrestored reach at 34.8 +/- 8.0 microg N x kg(-1) x d(-1). Concentrations of nitrate-N in groundwater and stream water in the restored reach were also significantly lower than in the unrestored reach, but this may have also been associated with differences in sources and hydrologic flow paths. Riparian areas with low, hydrologically "connected" streambanks designed to promote flooding and dissipation of erosive force for storm water management had substantially higher rates of denitrification than restored high "nonconnected" banks and both unrestored low and high banks. Coupled measurements of hyporheic groundwater flow and in situ denitrification rates indicated that up to 1.16 mg NO3(-)-N could be removed per liter of groundwater flow through one cubic meter of sediment at the riparian-zone-stream interface over a mean residence time of 4.97 d in the unrestored reach, and estimates of mass removal of nitrate-N in the restored reach were also considerable. Mass removal of nitrate-N appeared to be strongly influenced by hydrologic residence time in unrestored and restored reaches. Our results suggest that stream restoration designed to "reconnect" stream channels with floodplains can increase denitrification rates, that

  19. Effect of Rocking Movements on Respiration

    PubMed Central

    Omlin, Ximena; Crivelli, Francesco; Heinicke, Lorenz; Zaunseder, Sebastian; Achermann, Peter; Riener, Robert

    2016-01-01

    For centuries, rocking has been used to promote sleep in babies or toddlers. Recent research suggested that relaxation could play a role in facilitating the transition from waking to sleep during rocking. Breathing techniques are often used to promote relaxation. However, studies investigating head motions and body rotations showed that vestibular stimulation might elicit a vestibulo-respiratory response, leading to an increase in respiration frequency. An increase in respiration frequency would not be considered to promote relaxation in the first place. On the other hand, a coordination of respiration to rhythmic vestibular stimulation has been observed. Therefore, this study aimed to investigate the effect of different movement frequencies and amplitudes on respiration frequency. Furthermore, we tested whether subjects adapt their respiration to movement frequencies below their spontaneous respiration frequency at rest, which could be beneficial for relaxation. Twenty-one healthy subjects (24–42 years, 12 males) were investigated using an actuated bed, moving along a lateral translation. Following movement frequencies were applied: +30%, +15%, -15%, and -30% of subjects’ rest respiration frequency during baseline (no movement). Furthermore, two different movement amplitudes were tested (Amplitudes: 15 cm, 7.5 cm; movement frequency: 0.3 Hz). In addition, five subjects (25–28 years, 2 males) were stimulated with their individual rest respiration frequency. Rocking movements along a lateral translation caused a vestibulo-respiratory adaptation leading to an increase in respiration frequency. The increase was independent of the applied movement frequencies or amplitudes but did not occur when stimulating with subjects’ rest respiration frequency. Furthermore, no synchronization of the respiration frequency to the movement frequency was observed. In particular, subjects did not lower their respiration frequency below their resting frequency. Hence, it was not

  20. Estimating streambed travel times and respiration rates based on temperature and oxygen consumption

    NASA Astrophysics Data System (ADS)

    Vieweg, M.; Fleckenstein, J. H.; Schmidt, C.

    2015-12-01

    Oxygen consumption is a common proxy for aerobic respiration and novel in situ measurement techniques with high spatial resolution enable an accurate determination of the oxygen distribution in the streambed. The oxygen concentration at a certain location in the streambed depends on the input concentration, the respiration rate, temperature, and the travel time of the infiltrating flowpath. While oxygen concentrations and temperature can directly be measured, respiration rate and travel time must be estimated from the data. We investigated the interplay of these factors using a 6 month long, 5-min resolution dataset collected in a 3rdorder gravel-bed stream. Our objective was twofold, to determine transient rates of hyporheic respiration and to estimate travel times in the streambed based solely on oxygen and temperature measurements. Our results show that temperature and travel time explains ~70% of the variation in oxygen concentration in the streambed. Independent travel times were obtained using natural variations in the electrical conductivity (EC) of the stream water as tracer (µ=4.1 h; σ=2.3 h). By combining these travel times with the oxygen consumption, we calculated a first order respiration rate (µ=9.7 d-1; σ=6.1 d-1). Variations in the calculated respiration rate are largely explained by variations in streambed temperature. An empirical relationship between our respiration rate and temperature agrees with the theoretical Boltzmann-Arrhenius equation. With this relationship, a temperature-based respiration rate can be estimated and used to re-estimate subsurface travel times. The resulting travel times distinctively resemble the EC-derived travel times (R20.47; Nash-Sutcliffe coefficient 0.32). Both calculations of travel time are correlated to stream water levels and increase during discharge events, enhancing the oxygen consumption for these periods. No other physical factors besides temperature were significantly correlated with the respiration

  1. Die aerobe Glykolyse der Tumorzelle

    NASA Astrophysics Data System (ADS)

    Schneider, Friedhelm

    1981-01-01

    A high aerobic glycolysis (aerobic lactate production) is the most significant feature of the energy metabolism of rapidly growing tumor cells. Several mechanisms, which may be different in different cell lines, seem to be involved in this characteristic of energy metabolism of the tumor cell. Changes in the cell membrane leading to increased uptake and utilization of glucose, a high level of fetal types of isoenzymes, a decreased number of mitochondria and a reduced capacity to metabolize pyruvate are some factors which must be taken into consideration. It is not possible to favour one of them at the present time.

  2. Heterotrophic denitrification plays an important role in N₂O production from nitritation reactors treating anaerobic sludge digestion liquor.

    PubMed

    Wang, Qilin; Jiang, Guangming; Ye, Liu; Pijuan, Maite; Yuan, Zhiguo

    2014-10-01

    Nitrous oxide (N2O) emissions from nitritation reactors receiving real anaerobic sludge digestion liquor have been reported to be substantially higher than those from reactors receiving synthetic digestion liquor. This study aims to identify the causes for the difference, and to develop strategies to reduce N2O emissions from reactors treating real digestion liquor. Two sequencing batch reactors (SBRs) performing nitritation, fed with real (SBR-R) and synthetic (SBR-S) digestion liquors, respectively, were employed. The N2O emission factors for SBR-R and SBR-S were determined to be 3.12% and 0.80% of the NH4(+)-N oxidized, respectively. Heterotrophic denitrification supported by the organic carbon present in the real digestion liquor was found to be the key contributor to the higher N2O emission from SBR-R. Heterotrophic nitrite reduction likely stopped at N2O (rather than N2), with a hypothesised cause being free nitrous acid inhibition. This implies that all nitrite reduced by heterotrophic bacteria was converted to and emitted as N2O. Increasing dissolved oxygen (DO) concentration from 0.5 to 1.0 mg/L, or above, decreased aerobic N2O production from 2.0% to 0.5% in SBR-R, whereas aerobic N2O production in SBR-S remained almost unchanged (at approximately 0.5%). We hypothesised that DO at 1 mg/L or above suppressed heterotrophic nitrite reduction thus reduced aerobic heterotrophic N2O production. We recommend that DO in a nitritation system receiving anaerobic sludge digestion liquor should be maintained at approximately 1 mg/L to minimise N2O emission.

  3. Hydrologic connectivity increases denitrification in the hyporheic zone and restored floodplains of an agricultural stream

    NASA Astrophysics Data System (ADS)

    Roley, Sarah S.; Tank, Jennifer L.; Williams, Maureen A.

    2012-09-01

    Stream ecotones, specifically the lateral floodplain and subsurface hyporheic zone, can be important sites for nitrogen (N) removal via denitrification, but their role in streams with constructed floodplains has not been examined. We studied denitrification in the hyporheic zone and floodplains of an agriculturally influenced headwater stream in Indiana, USA, that had floodplains added as part of a "two-stage ditch" restoration project. To examine the potential for N removal in the hyporheic zone, we seasonally measured denitrification rates and nitrate concentrations by depth into the stream sediments. We found that nitrate concentration and denitrification rates declined with depth into the hyporheic zone, but denitrification was still measureable to a depth of at least 20 cm. We also measured denitrification rates on the restored floodplains over the course of a flood (pre, during, and post-inundation), and also compared denitrification rates between vegetated and non-vegetated areas of the floodplain. We found that floodplain denitrification rates increased over the course of a floodplain inundation event, and that the presence of surface water increased denitrification rates when vegetation was present. Stream ecotones in midwestern, agriculturally influenced streams have substantial potential for N removal via denitrification, particularly when they are hydrologically connected with high-nitrate surface water.

  4. Denitrification rates in a wastewater-irrigated forest soil in New Zealand

    SciTech Connect

    Barton, L.; McLay, C.D.A.; Schipper, L.A.; Smith, C.T.

    1999-12-01

    Denitrification is considered to be an important N removal process in land-based wastewater treatment systems, although in situ denitrification rates have rarely been reported. The authors investigated the contribution of denitrification to N removal in a land treatment system by measuring in situ denitrification rates for 12 mo in a Monterey pine (Pinus radiata D. Don) forest irrigated with tertiary-treated wastewater. The variability of denitrification rates was investigated using a nested field design that divided the land treatment system into four spatial components (irrigation block, topographic position, field site, and sample plot) and two temporal components (sample period, sample day). Denitrification was measured using undisturbed soil cores collected daily, for six consecutive days on 21 occasions throughout the year. Soil moisture content, NO{sub 3} concentration, available C, denitrifying enzyme activity, and temperature also were measured. The annual denitrification rate in the irrigated soil was 2.4 kg N ha{sup {minus}1} yr{sup {minus}1}, and only slightly higher than the unirrigated soil. Temporal effects contributed more than spatial effects to the overall variation in denitrification rates. Multiple regression analysis showed that soil factors could only explain 29% of the variation in denitrification rates. Soil water-filled porosity was low in the land treatment system, and less than the critical threshold value determined in a laboratory study. The authors concluded that denitrification in this land treatment system studied was limited by excessive aeration in the free-draining soils.

  5. The Transition from Aerobic to Anaerobic Metabolism.

    ERIC Educational Resources Information Center

    Skinner, James S.; McLellan, Thomas H.

    1980-01-01

    The transition from aerobic to anaerobic metabolism is discussed. More research is needed on different kinds of athletes and athletic activities and how they may affect aerobic and anaerobic metabolisms. (CJ)

  6. Soil respiration under climate warming: differential response of heterotrophic and autotrophic respiration.

    PubMed

    Wang, Xin; Liu, Lingli; Piao, Shilong; Janssens, Ivan A; Tang, Jianwu; Liu, Weixing; Chi, Yonggang; Wang, Jing; Xu, Shan

    2014-10-01

    Despite decades of research, how climate warming alters the global flux of soil respiration is still poorly characterized. Here, we use meta-analysis to synthesize 202 soil respiration datasets from 50 ecosystem warming experiments across multiple terrestrial ecosystems. We found that, on average, warming by 2 °C increased soil respiration by 12% during the early warming years, but warming-induced drought partially offset this effect. More significantly, the two components of soil respiration, heterotrophic respiration and autotrophic respiration showed distinct responses. The warming effect on autotrophic respiration was not statistically detectable during the early warming years, but nonetheless decreased with treatment duration. In contrast, warming by 2 °C increased heterotrophic respiration by an average of 21%, and this stimulation remained stable over the warming duration. This result challenged the assumption that microbial activity would acclimate to the rising temperature. Together, our findings demonstrate that distinguishing heterotrophic respiration and autotrophic respiration would allow us better understand and predict the long-term response of soil respiration to warming. The dependence of soil respiration on soil moisture condition also underscores the importance of incorporating warming-induced soil hydrological changes when modeling soil respiration under climate change.

  7. Manipulating Respiratory Levels in Escherichia coli for Aerobic Formation of Reduced Chemical Products

    PubMed Central

    Zhu, Jiangfeng; Sanchez, Ailen; Bennett, George N.; San, Ka-Yiu

    2011-01-01

    Optimizing the productivity of bioengineered strains requires balancing ATP generation and carbon atom conservation through fine-tuning cell respiration and metabolism. Traditional approaches manipulate cell respiration by altering air feeding, which are technically difficult especially in large bioreactors. An approach based on genetic regulation may better serve this purpose. With excess oxygen supply to the culture, we efficiently manipulated Escherichia coli cell respiration by adding different amount of coenzyme Q1 to strains lacking the ubiCA genes, which encode two critical enzymes for ubiquinone synthesis. As a proof-of-concept, the metabolic effect of the ubiCA gene knockout and coenzyme Q1 supplementation were characterized, and the metabolic profiles of the experimental strains showed clear correlations with coenzyme Q1 concentrations. Further proof-of-principle experiments were performed to illustrate that the approach can be used to optimize cell respiration for the production of chemicals of interest such as ethanol. This study showed that controlled respiration through genetic manipulation can be exploited to allow much larger operating windows for reduced product formation even under fully aerobic conditions. PMID:22001430

  8. Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation.

    PubMed

    Koch, Hanna; Galushko, Alexander; Albertsen, Mads; Schintlmeister, Arno; Gruber-Dorninger, Christiane; Lücker, Sebastian; Pelletier, Eric; Le Paslier, Denis; Spieck, Eva; Richter, Andreas; Nielsen, Per H; Wagner, Michael; Daims, Holger

    2014-08-29

    The bacterial oxidation of nitrite to nitrate is a key process of the biogeochemical nitrogen cycle. Nitrite-oxidizing bacteria are considered a highly specialized functional group, which depends on the supply of nitrite from other microorganisms and whose distribution strictly correlates with nitrification in the environment and in wastewater treatment plants. On the basis of genomics, physiological experiments, and single-cell analyses, we show that Nitrospira moscoviensis, which represents a widely distributed lineage of nitrite-oxidizing bacteria, has the genetic inventory to utilize hydrogen (H2) as an alternative energy source for aerobic respiration and grows on H2 without nitrite. CO2 fixation occurred with H2 as the sole electron donor. Our results demonstrate a chemolithoautotrophic lifestyle of nitrite-oxidizing bacteria outside the nitrogen cycle, suggesting greater ecological flexibility than previously assumed.

  9. Monitoring induced denitrification in an artificial aquifer recharge system.

    NASA Astrophysics Data System (ADS)

    Grau-Martinez, Alba; Torrentó, Clara; Folch, Albert; Domènech, Cristina; Otero, Neus; Soler, Albert

    2014-05-01

    As demands on groundwater increase, artificial recharge is becoming a common method for enhancing groundwater supply. The Llobregat River is a strategic water supply resource to the Barcelona metropolitan area (Catalonia, NE Spain). Aquifer overexploitation has leaded to both a decrease of groundwater level and seawater intrusion, with the consequent deterioration of water quality. In the middle section of the aquifer, in Sant Vicenç del Horts, decantation and infiltration ponds recharged by water from the Llobregat River (highly affected from wastewater treatment plant effluents), were installed in 2007, in the framework of the ENSAT Life+ project. At the bottom of the infiltration pond, a vegetal compost layer was installed to promote the growth of bacteria, to induce denitrification and to create favourable conditions for contaminant biodegradation. This layer consists on a mixture of compost, aquifer material, clay and iron oxide. Understanding the fate of contaminants, such as nitrate, during artificial aquifer recharge is required to evaluate the impact of artificial recharge in groundwater quality. In order to distinguish the source of nitrate and to evaluate the capability of the organic reactive layer to induce denitrification, a multi-isotopic approach coupled with hydrogeochemical data was performed. Groundwater samples, as well as river samples, were sampled during artificial and natural recharge periods. The isotopic analysis included: δ15N and δ18O of dissolved nitrate, δ34S and δ18O of dissolved sulphate, δ13C of dissolved inorganic carbon, and δ2H and δ18O of water. Dissolved nitrate isotopic composition (δ15NNO3 from +9 to +21 o and δ18ONO3 from +3 to +16 ) demonstrated that heterotrophic denitrification induced by the reactive layer was taking place during the artificial recharge periods. An approximation to the extent of nitrate attenuation was calculated, showing a range between 95 and 99% or between 35 and 45%, by using the extreme

  10. Production and decomposition of nitrous oxide during biological denitrification

    SciTech Connect

    Spector, M.

    1998-07-01

    Nitrate (NO{sub 3}) was reduced with methanol (MeOH) over denitrification-filter sludge in a closed reactor. The initial reaction product was nitrous oxide (N{sub 2}O). It accumulated to a maximum (N{sub 2}O{sub max}) and was then rapidly reduced to nitrogen (N{sub 2}). At the time of maximum accumulation (t{sub max}), 50 to 80% of the nitrate-nitrogen reduced was in the form of N{sub 2}O. These results led to a higher estimate of N{sub 2}O emission from biological denitrification than previously considered. The results also suggest the concept of a multistage anoxic reactor in which nitrate can be reduced to N{sub 2} with minimal emission of N{sub 2}O. The design would provide for retention of N{sub 2}O in the upstream stages and reduction of N{sub 2}O downstream.

  11. Aerobic organic carbon mineralization by sulfate-reducing bacteria in the oxygen-saturated photic zone of a hypersaline microbial mat.

    PubMed

    Jonkers, H M; Koh, I-O; Behrend, P; Muyzer, G; de Beer, D

    2005-02-01

    The sulfate-reducing bacterium strain SRB D2 isolated from the photic zone of a hypersaline microbial mat, from Lake Chiprana, NE Spain, respired pyruvate, alanine, and alpha-ketoglutarate but not formate, lactate, malate, succinate, and serine at significant rates under fully oxic conditions. Dehydrogenase enzymes of only the former substrates are likely oxygen-tolerant as all substrates supported anaerobic sulfate reduction. No indications were found, however, that aerobic respiration supported growth. Although strain SRB D2 appeared phylogenetically closely related to the oxygen-tolerant sulfate-reducing bacterium Desulfovibrio oxyclinae, substrate spectra were markedly different. Most-probable-number (MPN) estimates of sulfate-reducing bacteria and aerobic heterotrophic bacteria indicated that the latter were numerically dominant in both the photic and aphotic zones of the mat. Moreover, substrate spectra of representative isolates showed that the aerobic heterotrophic bacteria are metabolically more diverse. These findings indicate that sulfate-reducing bacteria in the fully oxic photic zone of mats have to compete with aerobic heterotrophic bacteria for organic substrates. Porewater analysis revealed that total carbohydrates and low-molecular-weight carbon compounds (LMWC) made up substantial fractions of the total dissolved organic carbon (DOC) pool and that nighttime degradation of the former was concomitant with increased concentration of the latter. Our findings indicate that aerobic respiration by sulfate-reducing bacteria contributes to organic carbon mineralization in the oxic zone of microbial mats as daytime porewater LMWC concentrations are above typical half-saturation constants.

  12. Aerobic organic carbon mineralization by sulfate-reducing bacteria in the oxygen-saturated photic zone of a hypersaline microbial mat.

    PubMed

    Jonkers, H M; Koh, I-O; Behrend, P; Muyzer, G; de Beer, D

    2005-02-01

    The sulfate-reducing bacterium strain SRB D2 isolated from the photic zone of a hypersaline microbial mat, from Lake Chiprana, NE Spain, respired pyruvate, alanine, and alpha-ketoglutarate but not formate, lactate, malate, succinate, and serine at significant rates under fully oxic conditions. Dehydrogenase enzymes of only the former substrates are likely oxygen-tolerant as all substrates supported anaerobic sulfate reduction. No indications were found, however, that aerobic respiration supported growth. Although strain SRB D2 appeared phylogenetically closely related to the oxygen-tolerant sulfate-reducing bacterium Desulfovibrio oxyclinae, substrate spectra were markedly different. Most-probable-number (MPN) estimates of sulfate-reducing bacteria and aerobic heterotrophic bacteria indicated that the latter were numerically dominant in both the photic and aphotic zones of the mat. Moreover, substrate spectra of representative isolates showed that the aerobic heterotrophic bacteria are metabolically more diverse. These findings indicate that sulfate-reducing bacteria in the fully oxic photic zone of mats have to compete with aerobic heterotrophic bacteria for organic substrates. Porewater analysis revealed that total carbohydrates and low-molecular-weight carbon compounds (LMWC) made up substantial fractions of the total dissolved organic carbon (DOC) pool and that nighttime degradation of the former was concomitant with increased concentration of the latter. Our findings indicate that aerobic respiration by sulfate-reducing bacteria contributes to organic carbon mineralization in the oxic zone of microbial mats as daytime porewater LMWC concentrations are above typical half-saturation constants. PMID:15965719

  13. Nitrous oxide emission from denitrification in stream and river networks

    PubMed Central

    Beaulieu, Jake J.; Tank, Jennifer L.; Hamilton, Stephen K.; Wollheim, Wilfred M.; Hall, Robert O.; Mulholland, Patrick J.; Peterson, Bruce J.; Ashkenas, Linda R.; Cooper, Lee W.; Dahm, Clifford N.; Dodds, Walter K.; Grimm, Nancy B.; Johnson, Sherri L.; McDowell, William H.; Poole, Geoffrey C.; Valett, H. Maurice; Arango, Clay P.; Bernot, Melody J.; Burgin, Amy J.; Crenshaw, Chelsea L.; Helton, Ashley M.; Johnson, Laura T.; O'Brien, Jonathan M.; Potter, Jody D.; Sheibley, Richard W.; Sobota, Daniel J.; Thomas, Suzanne M.

    2011-01-01

    Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N2O via microbial denitrification that converts N to N2O and dinitrogen (N2). The fraction of denitrified N that escapes as N2O rather than N2 (i.e., the N2O yield) is an important determinant of how much N2O is produced by river networks, but little is known about the N2O yield in flowing waters. Here, we present the results of whole-stream 15N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N2O at rates that increase with stream water nitrate (NO3−) concentrations, but that <1% of denitrified N is converted to N2O. Unlike some previous studies, we found no relationship between the N2O yield and stream water NO3−. We suggest that increased stream NO3− loading stimulates denitrification and concomitant N2O production, but does not increase the N2O yield. In our study, most streams were sources of N2O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg·y−1 of anthropogenic N inputs to N2O in river networks, equivalent to 10% of the global anthropogenic N2O emission rate. This estimate of stream and river N2O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change. PMID:21173258

  14. Nitrous oxide emission from denitrification in stream and river networks

    USGS Publications Warehouse

    Beaulieu, J.J.; Tank, J.L.; Hamilton, S.K.; Wollheim, W.M.; Hall, R.O.; Mulholland, P.J.; Peterson, B.J.; Ashkenas, L.R.; Cooper, L.W.; Dahm, Clifford N.; Dodds, W.K.; Grimm, N. B.; Johnson, S.L.; McDowell, W.H.; Poole, G.C.; Maurice, Valett H.; Arango, C.P.; Bernot, M.J.; Burgin, A.J.; Crenshaw, C.L.; Helton, A.M.; Johnson, L.T.; O'Brien, J. M.; Potter, J.D.; Sheibley, R.W.; Sobota, D.J.; Thomas, S.M.

    2011-01-01

    Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N 2O via microbial denitrification that converts N to N2O and dinitrogen (N2). The fraction of denitrified N that escapes as N2O rather than N2 (i.e., the N2O yield) is an important determinant of how much N2O is produced by river networks, but little is known about the N2O yield in flowing waters. Here, we present the results of whole-stream 15N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N2O at rates that increase with stream water nitrate (NO3-) concentrations, but that <1% of denitrified N is converted to N2O. Unlike some previous studies, we found no relationship between the N2O yield and stream water NO3-. We suggest that increased stream NO3- loading stimulates denitrification and concomitant N2O production, but does not increase the N2O yield. In our study, most streams were sources of N2O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg??y -1 of anthropogenic N inputs to N2O in river networks, equivalent to 10% of the global anthropogenic N2O emission rate. This estimate of stream and river N2O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change.

  15. Effects of Cyanide and Ethylene on the Respiration of Cyanide-sensitive and Cyanide-resistant Plant Tissues 1

    PubMed Central

    Solomos, Theophanes; Laties, George G.

    1976-01-01

    The effects of cyanide and ethylene, respectively, were studied on the respiration of a fully cyanide-sensitive tissue-the fresh pea, a slightly cyanide-sensitive tissue-the germinating pea seedling, and a cyanide-insensitive tissue-the cherimoya fruit. Cyanide inhibition of both fresh pea and pea seedling respiration was attended by a conventional Pasteur effect where fermentation was enhanced with an accumulation of lactate and ethanol and a change in the level of glycolytic intermediates indicative of the activation of phosphofructokinase and pyruvate kinase accompanied by a sharp decline in ATP level. In these tissues, ethylene had little or no effect on the respiration rate, or on the level of glycolytic intermediates or ATP. By contrast, ethylene as well as cyanide enhanced both respiration and aerobic glycolysis in cherimoya fruits with no buildup of lactate and ethanol and with an increase in the level of ATP. The data support the proposition that for ethylene to stimulate respiration the capacity for cyanide-resistant respiration must be present. PMID:16659618

  16. [Performance of new solid carbon source materials for denitrification].

    PubMed

    Shao, Liu; Xu, Zu-Xin; Wang, Sheng; Jin, Wei; Yin, Hai-Long

    2011-08-01

    Organic carbon is needed as the electron donor in the process of reduction of nitrate transformation to nitrogen gas, which is essential for biological denitrification. Based on previous research, agriculture wastes including corncob, rice hull, rice straw and sawdust were selected as potential carbon source for denitrification. Using the static organic material of carbon source leaching kinetics test and orthogonal experiments of external factors on carbon emission process, carbon release and its mechanism of a variety of carbon materials were studied. Study showed that release process of various types of carbon source materials follows the second dynamics formula, the release curve displayed a better double-reciprocal relationship. It revealed that release amount of rice straw was the highest and sawdust was the lowest. Results showed that corncob could better be used as carbon source for denitrification. Orthogonal test indicated that the increasing of solid-liquid ratio and water temperature would lead to an enhanced release capacity of carbon, however, the change of pH had no significant effect on release capacity of carbon; according to significant degree of water temperature, pH, solid-liquid ratio impacted on the carbon release, it was sorted by solid-liquid ratio > temperature > pH. PMID:22619957

  17. The isotope effect of denitrification in permeable sediments

    NASA Astrophysics Data System (ADS)

    Kessler, Adam J.; Bristow, Laura A.; Cardenas, M. Bayani; Glud, Ronnie N.; Thamdrup, Bo; Cook, Perran L. M.

    2014-05-01

    Natural ratios of 15N/14N are commonly used to help constrain marine nitrogen budgets. This requires an understanding of the isotope effect (ɛ) associated with nitrogen fixation and denitrification. Permeable sediments cover 70% of the continental shelf and are suggested to represent an important sink for fixed nitrogen, yet there are no ɛ values published for denitrification in this sediment type. We undertook controlled column experiments to quantify the cellular (ɛcell) fractionation factors for N and O isotopes of nitrate in permeable sediments collected from the Danish Kattegat. Values of ɛcell were 18.1 ± 1‰ for N and 14.2 ± 0.8‰ for O during dissimilatory nitrate reduction, which is consistent with ɛcell values determined in cohesive sediments and recently published ɛcell values for pure cultures at environmentally relevant nitrate concentrations. A diagenetic model was formulated to estimate the net transmission of this isotope effect to the overlying water under realistic advective flow (ɛapp). Model simulations of benthic denitrification in a typical rippled sediment at different realistic environmental conditions showed an average net ɛapp of 2.7 ± 1.3‰ and 2.9 ± 1.0‰ depending on the inclusion or exclusion of nitrification. These results are similar to ranges of ɛapp reported in cohesive sediments, and support recent models which balance the global nitrogen budget.

  18. Confirmation of co-denitrification in grazed grassland.

    PubMed

    Selbie, Diana R; Lanigan, Gary J; Laughlin, Ronald J; Di, Hong J; Moir, James L; Cameron, Keith C; Clough, Tim J; Watson, Catherine J; Grant, James; Somers, Cathal; Richards, Karl G

    2015-11-30

    Pasture-based livestock systems are often associated with losses of reactive forms of nitrogen (N) to the environment. Research has focused on losses to air and water due to the health, economic and environmental impacts of reactive N. Di-nitrogen (N2) emissions are still poorly characterized, both in terms of the processes involved and their magnitude, due to financial and methodological constraints. Relatively few studies have focused on quantifying N2 losses in vivo and fewer still have examined the relative contribution of the different N2 emission processes, particularly in grazed pastures. We used a combination of a high (15)N isotopic enrichment of applied N with a high precision of determination of (15)N isotopic enrichment by isotope-ratio mass spectrometry to measure N2 emissions in the field. We report that 55.8 g N m(-2) (95%, CI 38 to 77 g m(-2)) was emitted as N2 by the process of co-denitrification in pastoral soils over 123 days following urine deposition (100 g N m(-2)), compared to only 1.1 g N m(-2) (0.4 to 2.8 g m(-2)) from denitrification. This study provides strong evidence for co-denitrification as a major N2 production pathway, which has significant implications for understanding the N budgets of pastoral ecosystems.

  19. Simultaneous anammox and denitrification (SAD) process in sequencing batch reactors.

    PubMed

    Takekawa, Masashi; Park, Giri; Soda, Satoshi; Ike, Michihiko

    2014-12-01

    This study investigated nitrogen removal by the simultaneous anaerobic ammonium oxidation (anammox) and heterotrophic denitrification (SAD) process in a sequencing batch reactor (SBR) inoculated with suspended activated sludge and immobilized anammox sludge at various total organic carbon/nitrate (C/N) ratios. Synthetic wastewater containing nitrate 100mg-NL(-1), ammonium 70mg-NL(-1), and acetate 50-250mg-CL(-1) was fed to the SBR. Nitrite reduced from nitrate by heterotrophic denitrification was accumulated and removed with ammonium in each cycle operation of the SBR. The SAD process removed nitrate and ammonium effectively (T-N removal, 58-94%) by the high anammox contribution (ca. 80-100%) under low C/N ratios (0.5-1.0). At high C/N ratios of 1.2-2.5, the SAD process maintained T-N removal 67-79% with predominance of heterotrophic denitrification instead of anammox reaction. Results demonstrated that the SAD process performs high nitrogen removal effectively from wastewater with widely different C/N ratios.

  20. Effect of tourmaline on denitrification characteristics of hydrogenotrophic bacteria.

    PubMed

    Wang, Wei; Jiang, Hongyan; Zhu, Guangquan; Song, Xueying; Liu, Xingyu; Qiao, Ya

    2016-03-01

    To improve the denitrification characteristics of anaerobic denitrifying bacteria and obviate the disadvantage of use of explosive hydrogen gas, tourmaline, a polar mineral, was added to the hydrogenotrophic denitrification system in this study. Microbial reduction of nitrate in the presence of tourmaline was evaluated to assess the promotion effect of tourmaline on nitrate biodegradation. The experiment results demonstrated that tourmaline speeded up the cultivation process of bacteria from 65 to 36 days. After domestication of the bacteria, nitrate (50 mg NO3 (-)-N L(-1)) was completely removed within 3 days in the combined tourmaline-bacteria system, and the generated nitrite was also removed within 8 days. The reduction rate in this system is higher relative to that in the bacteria system alone. Efficient removal of nitrate by tourmaline-supported anaerobic bacteria (without external hydrogen input) indicated that tourmaline might act as the sole hydrogen donor to sustain autotrophic denitrification. Besides the production of hydrogen, the promoted activity of anaerobic denitrifying bacteria might be caused by the change of water properties, e.g., the pH of aqueous solutions was altered to about 8.0 and the oxidation-reduction potential decreased by 62 % in the tourmaline system. The distinctive effects of tourmaline on bacteria were related to its electric properties. PMID:26545889

  1. Confirmation of co-denitrification in grazed grassland

    NASA Astrophysics Data System (ADS)

    Selbie, Diana R.; Lanigan, Gary J.; Laughlin, Ronald J.; di, Hong J.; Moir, James L.; Cameron, Keith C.; Clough, Tim J.; Watson, Catherine J.; Grant, James; Somers, Cathal; Richards, Karl G.

    2015-11-01

    Pasture-based livestock systems are often associated with losses of reactive forms of nitrogen (N) to the environment. Research has focused on losses to air and water due to the health, economic and environmental impacts of reactive N. Di-nitrogen (N2) emissions are still poorly characterized, both in terms of the processes involved and their magnitude, due to financial and methodological constraints. Relatively few studies have focused on quantifying N2 losses in vivo and fewer still have examined the relative contribution of the different N2 emission processes, particularly in grazed pastures. We used a combination of a high 15N isotopic enrichment of applied N with a high precision of determination of 15N isotopic enrichment by isotope-ratio mass spectrometry to measure N2 emissions in the field. We report that 55.8 g N m-2 (95%, CI 38 to 77 g m-2) was emitted as N2 by the process of co-denitrification in pastoral soils over 123 days following urine deposition (100 g N m-2), compared to only 1.1 g N m-2 (0.4 to 2.8 g m-2) from denitrification. This study provides strong evidence for co-denitrification as a major N2 production pathway, which has significant implications for understanding the N budgets of pastoral ecosystems.

  2. Simulation of three-phase fluidized bioreactors for denitrification

    SciTech Connect

    Hamza, A.V.; Dolan, J.F.; Wong, E.W.

    1981-03-01

    Fluidized-bed bioreactors were developed and operated at three scales (diameters of 0.1, 0.2, and 0.5 m) by the Chemical Technology Division. The performance of these reactors in denitrification was simulated using the following modified form of Monod kinetics to describe the reaction kinetics: rate = V/sub max/ (NO/sub 3//sup -//K/sub s/ + NO/sub 3//sup -/) (% biomass). In the fluids-movement portion of the simulation the tanks-in-series approximation to backmixing was used. This approach yielded a V/sub max/ of 3.5 g/m/sup 3/-min (% biomass) and a K/sub s/ of 163 g/m/sup 3/ for the 0.5-m bioreactor. Values of V/sub max/ and K/sub s/ were also determined for data derived from the 0.1-m bioreactor, but inadequate RTD data reduced the confidence level in these results. A complication in denitrification is the multi-step nature of the reduction from nitrate to nitrite to hyponitrite and finally to nitrogen. An experimental study of the effect of biomass loading upon denitrification was begun. It is recommended that the experimental work be continued.

  3. Confirmation of co-denitrification in grazed grassland

    PubMed Central

    Selbie, Diana R.; Lanigan, Gary J.; Laughlin, Ronald J.; Di, Hong J.; Moir, James L.; Cameron, Keith C.; Clough, Tim J.; Watson, Catherine J.; Grant, James; Somers, Cathal; Richards, Karl G.

    2015-01-01

    Pasture-based livestock systems are often associated with losses of reactive forms of nitrogen (N) to the environment. Research has focused on losses to air and water due to the health, economic and environmental impacts of reactive N. Di-nitrogen (N2) emissions are still poorly characterized, both in terms of the processes involved and their magnitude, due to financial and methodological constraints. Relatively few studies have focused on quantifying N2 losses in vivo and fewer still have examined the relative contribution of the different N2 emission processes, particularly in grazed pastures. We used a combination of a high 15N isotopic enrichment of applied N with a high precision of determination of 15N isotopic enrichment by isotope-ratio mass spectrometry to measure N2 emissions in the field. We report that 55.8 g N m−2 (95%, CI 38 to 77 g m−2) was emitted as N2 by the process of co-denitrification in pastoral soils over 123 days following urine deposition (100 g N m−2), compared to only 1.1 g N m−2 (0.4 to 2.8 g m−2) from denitrification. This study provides strong evidence for co-denitrification as a major N2 production pathway, which has significant implications for understanding the N budgets of pastoral ecosystems. PMID:26615911

  4. Effect of tourmaline on denitrification characteristics of hydrogenotrophic bacteria.

    PubMed

    Wang, Wei; Jiang, Hongyan; Zhu, Guangquan; Song, Xueying; Liu, Xingyu; Qiao, Ya

    2016-03-01

    To improve the denitrification characteristics of anaerobic denitrifying bacteria and obviate the disadvantage of use of explosive hydrogen gas, tourmaline, a polar mineral, was added to the hydrogenotrophic denitrification system in this study. Microbial reduction of nitrate in the presence of tourmaline was evaluated to assess the promotion effect of tourmaline on nitrate biodegradation. The experiment results demonstrated that tourmaline speeded up the cultivation process of bacteria from 65 to 36 days. After domestication of the bacteria, nitrate (50 mg NO3 (-)-N L(-1)) was completely removed within 3 days in the combined tourmaline-bacteria system, and the generated nitrite was also removed within 8 days. The reduction rate in this system is higher relative to that in the bacteria system alone. Efficient removal of nitrate by tourmaline-supported anaerobic bacteria (without external hydrogen input) indicated that tourmaline might act as the sole hydrogen donor to sustain autotrophic denitrification. Besides the production of hydrogen, the promoted activity of anaerobic denitrifying bacteria might be caused by the change of water properties, e.g., the pH of aqueous solutions was altered to about 8.0 and the oxidation-reduction potential decreased by 62 % in the tourmaline system. The distinctive effects of tourmaline on bacteria were related to its electric properties.

  5. Membrane thickening aerobic digestion processes.

    PubMed

    Woo, Bryen

    2014-01-01

    Sludge management accounts for approximately 60% of the total wastewater treatment plant expenditure and laws for sludge disposal are becoming increasingly stringent, therefore much consideration is required when designing a solids handling process. A membrane thickening aerobic digestion process integrates a controlled aerobic digestion process with pre-thickening waste activated sludge using membrane technology. This process typically features an anoxic tank, an aerated membrane thickener operating in loop with a first-stage digester followed by second-stage digestion. Membrane thickening aerobic digestion processes can handle sludge from any liquid treatment process and is best for facilities obligated to meet low total phosphorus and nitrogen discharge limits. Membrane thickening aerobic digestion processes offer many advantages including: producing a reusable quality permeate with minimal levels of total phosphorus and nitrogen that can be recycled to the head works of a plant, protecting the performance of a biological nutrient removal liquid treatment process without requiring chemical addition, providing reliable thickening up to 4% solids concentration without the use of polymers or attention to decanting, increasing sludge storage capacities in existing tanks, minimizing the footprint of new tanks, reducing disposal costs, and providing Class B stabilization.

  6. Arthritis and Aerobic Exercise: A Review.

    ERIC Educational Resources Information Center

    Ike, Robert W.; And Others

    1989-01-01

    Arthritic patients who regularly do aerobic exercise make significant gains in aerobic and functional status, and in subjective areas like pain tolerance and mood. Still, they are often advised to curtail physical activity. Guidelines are presented for physicians prescribing aerobic exercise. An exercise tolerance test is recommended. (SM)

  7. Cyanide-insensitive Respiration in Pea Cotyledons.

    PubMed

    James, T W; Spencer, M S

    1979-09-01

    Mitochondria isolated by a zonal procedure from the cotyledons of germinating peas possessed a cyanide-resistant respiration. This respiration was virtually absent in mitochondria isolated during the first 24 hours of germination but thereafter increased gradually until the 6th or 7th day of seedling development. At this time between 15 and 20% of the succinate oxidation was not inhibited by cyanide. The activity of the cyanide-resistant respiration was also determined in the absence of cyanide. Relationships among mitochondrial structure, cyanide-resistant respiration, and seedling development are discussed.

  8. Respirator selection for clandestine methamphetamine laboratory investigation.

    PubMed

    Nelson, Gary O; Bronder, Gregory D; Larson, Scott A; Parker, Jay A; Metzler, Richard W

    2012-01-01

    First responders to illicit drug labs may not always have SCBA protection available. Air-purifying respirators using organic vapor cartridges with P-100 filters may not be sufficient. It would be better to use a NIOSH-approved CBRN respirator with its required multi-purpose cartridge system, which includes a P-100 filter. This would remove all the primary drug lab contaminants—organic vapors, acid gases, ammonia, phosphine, iodine, and airborne meth particulates. To assure the proper selection and use of a respirator, it is recommended that the contaminants present be identified and quantified and the OSHA 29 CFR 1910.134 respirator protection program requirements followed. PMID:22571884

  9. Respirator protection factors: Part II-protection factors of supplied-air respirators.

    PubMed

    Hack, A L; Bradley, O D; Trujillo, A

    1980-05-01

    Protection Factors provided by 25 NIOSH approved supplied-air respirators were determined while the devices were worn by a panel of test subjects anthropometrically selected to represent adult facial sizes. Polydispersed DOP aerosol was used for respirator fit tests on continuous flow, demand, and pressure-demand respirators. Based on facepiece leakage measurements it appears that demand-type respirators should neither be used nor approved. The highest level of protection was provided by pressure-demand devices.

  10. Denitrification 'hot spots' in soil following surface residue application

    NASA Astrophysics Data System (ADS)

    Kuntz, Marianne; Morley, Nicholas J.; Hallett, Paul D.; Watson, Christine; Baggs, Elizabeth M.

    2015-04-01

    The availability of organic C is an important driver for the production and reduction of the greenhouse gas nitrous oxide (N2O) during denitrification. Denitrification as a response to plant residue amendments to soil surfaces has been extensively researched. However, the nature of hotspot sites of N2O production and reduction within the soil profile, especially in relation to the location of applied residues, is unknown. In a laboratory experiment we investigated the relationship between denitrifier N2O surface fluxes and N2O production and reduction sites. Probes which equilibrate with the soil gas phase by diffusion were developed to quantify denitrification products and product ratios at 1-2 cm, 4.5-5.5 cm or 8-9 cm from the surface. 13C labelled barley straw was incorporated at rates of 0, 2 and 4 t ha-1 into the top 3 cm of soil and subsequently amended with 14NH415NO3. In a three week experiment the soil gas phase at the three depths was analysed for 15N-N2O, 15N-N2, 13C-CO2 and O2 concentrations. Additionally, cores were destructively sampled for mineral 15N as well as microbial C and dissolved C in the respective depths. 15N-N2O and CO2 surface fluxes peaked one day after N application, with residue application resulting in significantly higher 15N-N2O emission rates compared to the non-amended control. The timing of the 15N-N2O surface flux on day 1 was related to maximum 15N-N2O concentrations of 36.6 μg 15N L-1 within the pore space at 5 cm depth. Three days after fertilizer application 15N-N2O pore space concentrations had significantly increased to 193 μg 15N L-1 at 9 cm depth indicating denitrifier activity at greater depth. Denitrification below the soil surface could be explained by increased microbial activity, oxygen depletion with increasing depth and progressive downwards diffusion of fertilizer NO3-. However, C availability appeared to only affect denitrification in the surface layer in which the residue was incorporated. Our results provide

  11. Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis.

    PubMed

    Yoon, Sang Sun; Hennigan, Robert F; Hilliard, George M; Ochsner, Urs A; Parvatiyar, Kislay; Kamani, Moneesha C; Allen, Holly L; DeKievit, Teresa R; Gardner, Paul R; Schwab, Ute; Rowe, John J; Iglewski, Barbara H; McDermott, Timothy R; Mason, Ronald P; Wozniak, Daniel J; Hancock, Robert E W; Parsek, Matthew R; Noah, Terry L; Boucher, Richard C; Hassett, Daniel J

    2002-10-01

    Recent data indicate that cystic fibrosis (CF) airway mucus is anaerobic. This suggests that Pseudomonas aeruginosa infection in CF reflects biofilm formation and persistence in an anaerobic environment. P. aeruginosa formed robust anaerobic biofilms, the viability of which requires rhl quorum sensing and nitric oxide (NO) reductase to modulate or prevent accumulation of toxic NO, a byproduct of anaerobic respiration. Proteomic analyses identified an outer membrane protein, OprF, that was upregulated approximately 40-fold under anaerobic versus aerobic conditions. Further, OprF exists in CF mucus, and CF patients raise antisera to OprF. An oprF mutant formed poor anaerobic biofilms, due, in part, to defects in anaerobic respiration. Thus, future investigations of CF pathogenesis and therapy should include a better understanding of anaerobic metabolism and biofilm development by P. aeruginosa.

  12. Exercise performance while wearing a tight-fitting powered air purifying respirator with limited flow.

    PubMed

    Johnson, Arthur T; Mackey, Kathryn R; Scott, William H; Koh, Frank C; Chiou, Ken Y H; Phelps, Stephanie J

    2005-07-01

    Sixteen subjects exercised at 80-85% of maximal aerobic capacity on a treadmill while wearing a tight-fitting, FRM40-Turbo Powered Air Purifying Respirator (PAPR). The PAPR was powered by a DC power supply to give flow rates of 0%, 30%, 66%, 94%, and 100% of rated maximum blower capacity of 110 L/min. As flow rate was reduced, so was performance time. There was a 20% reduction in performance time as blower flow changed from 100% to 0% of maximum. Significant differences in breathing apparatus comfort and facial thermal comfort were found as flow rate varied. It was concluded that inadequate blower flow rate decreases performance time, facial cooling, and respirator comfort. PMID:16020100

  13. A model of metabolic changes in respiration-deficient human cells.

    PubMed

    Bollmann, F Mathias

    2007-09-01

    Cells lacking aerobic metabolism because of damaged mtDNA accumulate in many postmitotic tissues in the course aging. Although being only a small fraction of cells, they might play a major role in oxidative stress affecting the whole body. However, it remains unclear how such cells, which are under normal circumstances dependent on aerobic metabolism, are able to survive for decades in vivo. Here a new model is presented that proposes a coexistence of anaerobic glycolysis and a partly reversed TCA cycle. Succinate plays a key role in the changed metabolic pathways because it has to be exported by the cell. This hypothesis supports the view that some respiration-deficient cells are able to survive permanently within the body and contribute to human aging.

  14. Glycolysis and respiration in yeasts. The Pasteur effect studied by mass spectrometry.

    PubMed

    Lloyd, D; Kristensen, B; Degn, H

    1983-06-15

    Simultaneous and continuous measurements of changes in CO2 and O2 concentrations in glucose-metabolizing yeast suspensions by mass spectrometry enabled a study of the Pasteur effect (aerobic inhibition of glycolysis) in Saccharomyces uvarum and Schizosaccharomyces pombe. A different control mechanism operates in Candida utilis to give a damped oscillation after the anaerobic-aerobic transition. The apparent Km values for respiration of the three yeasts were in the range 1.3-1.8 microM-O2. The apparent Km values for O2 of the Pasteur effect were 5 and 13 microM for catabolite-repressed and derepressed S. uvarum respectively and 7 microM for Sch. pombe. These results are discussed with respect to currently accepted mechanisms for the control of glycolysis.

  15. Municipal wastewater treatment in the anaerobic-aerobic baffled filter reactor at ambient temperature.

    PubMed

    Bodík, I; Kratochvíl, K; Herdová, B; Tapia, G; Gaspariková, E

    2002-01-01

    This paper presents the pilot-scale experiments with anaerobic-aerobic treatment of municipal wastewater. As the anaerobic part of the pilot-scale system, the combination of the anaerobic baffled reactor and the anaerobic filter was used. The aerobic part of reactor was designed as an activated sludge system with the carrier of biomass (polypropylene cords). Two pilot-scale reactors (AN-I and AN-II) under real conditions were monitored. All technological parameters were identical in both reactors, but the AN-I reactor was inoculated with the psychrophilic digested sludge. The HRT in the anaerobic and aerobic parts of reactors were about 15 hours and 4 hours, respectively. The temperature in both reactors varied during the year from 4.5 to 23 degrees C. During the yearly operation time both systems removed all monitored parameters with relatively high efficiencies (COD-78.6-83.0%, BOD5-92.5-94.0 and SS-80.9-92.7%). The intensive nitrification process was observed during the whole year in both reactors (under average temperature of 5.9 degrees C in January 2000, too). The average removal of the NH4-N varied during the year from 46.4 to 87.3%. In both systems the effective denitrification process was observed, too. In the real conditions it is possible to operate such systems for a long time without removing excess sludge. PMID:12420975

  16. 42 CFR 84.197 - Respirator containers; minimum requirements.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false Respirator containers; minimum requirements. 84.197... Cartridge Respirators § 84.197 Respirator containers; minimum requirements. Respirators shall be equipped... commercial designation of the respirator it contains and all appropriate approval labels....

  17. 42 CFR 84.250 - Vinyl chloride respirators; description.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false Vinyl chloride respirators; description. 84.250... Respirators § 84.250 Vinyl chloride respirators; description. Vinyl chloride respirators, including all completely assembled respirators which are designed for use as respiratory protection during entry into...

  18. 42 CFR 84.134 - Respirator containers; minimum requirements.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false Respirator containers; minimum requirements. 84.134... Respirators § 84.134 Respirator containers; minimum requirements. Supplied-air respirators shall be equipped... commercial designation of the respirator it contains, and all appropriate approval labels....

  19. 42 CFR 84.250 - Vinyl chloride respirators; description.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false Vinyl chloride respirators; description. 84.250... Respirators § 84.250 Vinyl chloride respirators; description. Vinyl chloride respirators, including all completely assembled respirators which are designed for use as respiratory protection during entry into...

  20. Expedited CO2 respiration in people with Miltenberger erythrocyte phenotype GP.Mur.

    PubMed

    Hsu, Kate; Kuo, Mei-Shin; Yao, Ching-Che; Lee, Ting-Ying; Chen, Yi-Chun; Cheng, Han-Chih; Lin, Chia-Hao; Yu, Tzung-Han; Lin, Hui-Ju

    2015-05-22

    In Southeast Asia, Miltenberger antigen subtype III (Mi.III; GP.Mur) is considered one of the most important red blood cell antigens in the field of transfusion medicine. Mi.III functions to promote erythrocyte band 3 expression and band 3-related HCO3(-) transport, with implications in blood CO2 metabolism. Could Mi.III affect physiologic CO2 respiration in its carriers? Here, we conducted a human trial to study the impacts of Mi.III expression in respiration. We recruited 188 healthy, adult subjects for blood typing, band 3 measurements, and respiratory tests before and after exercise. The 3-minute step exercise test forced the demand for CO2 dissipation to rise. We found that immediately following exercise, Mi.III + subjects exhaled CO2 at greater rates than Miltenberger-negative subjects. Respiration rates were also higher for Mi.III + subjects immediately after exercise. Blood gas tests further revealed distinct blood CO2 responses post-exercise between Mi.III and non-Mi.III. In contrast, from measurements of heart rates, blood O2 saturation and lactate, Mi.III phenotype was found to be independent of one's aerobic and anaerobic capacities. Thus, Mi.III expression supported physiologic CO2 respiration. Conceivably, Mi.III + people may have advantages in performing physically enduring activities.

  1. Contribution of cell elongation to the biofilm formation of Pseudomonas aeruginosa during anaerobic respiration.

    PubMed

    Yoon, Mi Young; Lee, Kang-Mu; Park, Yongjin; Yoon, Sang Sun

    2011-01-18

    Pseudomonas aeruginosa, a gram-negative bacterium of clinical importance, forms more robust biofilm during anaerobic respiration, a mode of growth presumed to occur in abnormally thickened mucus layer lining the cystic fibrosis (CF) patient airway. However, molecular basis behind this anaerobiosis-triggered robust biofilm formation is not clearly defined yet. Here, we identified a morphological change naturally accompanied by anaerobic respiration in P. aeruginosa and investigated its effect on the biofilm formation in vitro. A standard laboratory strain, PAO1 was highly elongated during anaerobic respiration compared with bacteria grown aerobically. Microscopic analysis demonstrated that cell elongation likely occurred as a consequence of defective cell division. Cell elongation was dependent on the presence of nitrite reductase (NIR) that reduces nitrite (NO(2) (-)) to nitric oxide (NO) and was repressed in PAO1 in the presence of carboxy-PTIO, a NO antagonist, demonstrating that cell elongation involves a process to respond to NO, a spontaneous byproduct of the anaerobic respiration. Importantly, the non-elongated NIR-deficient mutant failed to form biofilm, while a mutant of nitrate reductase (NAR) and wild type PAO1, both of which were highly elongated, formed robust biofilm. Taken together, our data reveal a role of previously undescribed cell biological event in P. aeruginosa biofilm formation and suggest NIR as a key player involved in such process.

  2. Expedited CO2 respiration in people with Miltenberger erythrocyte phenotype GP.Mur.

    PubMed

    Hsu, Kate; Kuo, Mei-Shin; Yao, Ching-Che; Lee, Ting-Ying; Chen, Yi-Chun; Cheng, Han-Chih; Lin, Chia-Hao; Yu, Tzung-Han; Lin, Hui-Ju

    2015-01-01

    In Southeast Asia, Miltenberger antigen subtype III (Mi.III; GP.Mur) is considered one of the most important red blood cell antigens in the field of transfusion medicine. Mi.III functions to promote erythrocyte band 3 expression and band 3-related HCO3(-) transport, with implications in blood CO2 metabolism. Could Mi.III affect physiologic CO2 respiration in its carriers? Here, we conducted a human trial to study the impacts of Mi.III expression in respiration. We recruited 188 healthy, adult subjects for blood typing, band 3 measurements, and respiratory tests before and after exercise. The 3-minute step exercise test forced the demand for CO2 dissipation to rise. We found that immediately following exercise, Mi.III + subjects exhaled CO2 at greater rates than Miltenberger-negative subjects. Respiration rates were also higher for Mi.III + subjects immediately after exercise. Blood gas tests further revealed distinct blood CO2 responses post-exercise between Mi.III and non-Mi.III. In contrast, from measurements of heart rates, blood O2 saturation and lactate, Mi.III phenotype was found to be independent of one's aerobic and anaerobic capacities. Thus, Mi.III expression supported physiologic CO2 respiration. Conceivably, Mi.III + people may have advantages in performing physically enduring activities. PMID:26000803

  3. Automatic detection of exogenous respiration end-point using artificial neural network.

    PubMed

    Bisschops, I; Spanjers, H; Keesman, K

    2006-01-01

    When aerobic bacteria receive a biodegradable material such as wastewater, then respiration changes from endogenous to exogenous. The reverse occurs when biodegradation is complete. When using respirometry a respirogram is recorded showing those changes in respiration, and for an expert it is not difficult to point the moments at which they occur. The area corresponding to the exogenous respiration phase is a measure of the easily biodegradable fraction of material, also called the short-term BOD or BOD(ST). That value, in combination with a value for COD, can be used to determine the treatability of wastewater. Respirometry can also be applied on-line, e.g. for on-line monitoring of wastewater. However, automatic detection of the end-point of exogenous respiration is difficult. The first step towards on-line monitoring of wastewater treatability is to make automatic detection of this end-point possible. In this study the use of a neural network for detection of this end-point was investigated. Results are promising; after training the neural network is able to detect the correct end-point in the majority of the studied cases.

  4. Nitrogen, carbon, and sulfur isotopic change during heterotrophic (Pseudomonas aureofaciens) and autotrophic (Thiobacillus denitrificans) denitrification reactions.

    PubMed

    Hosono, Takahiro; Alvarez, Kelly; Lin, In-Tian; Shimada, Jun

    2015-12-01

    In batch culture experiments, we examined the isotopic change of nitrogen in nitrate (δ(15)NNO3), carbon in dissolved inorganic carbon (δ(13)CDIC), and sulfur in sulfate (δ(34)SSO4) during heterotrophic and autotrophic denitrification of two bacterial strains (Pseudomonas aureofaciens and Thiobacillus denitrificans). Heterotrophic denitrification (HD) experiments were conducted with trisodium citrate as electron donor, and autotrophic denitrification (AD) experiments were carried out with iron disulfide (FeS2) as electron donor. For heterotrophic denitrification experiments, a complete nitrate reduction was accomplished, however bacterial denitrification with T. denitrificans is a slow process in which, after seventy days nitrate was reduced to 40% of the initial concentration by denitrification. In the HD experiment, systematic change of δ(13)CDIC (from -7.7‰ to -12.2‰) with increase of DIC was observed during denitrification (enrichment factor εN was -4.7‰), suggesting the contribution of C of trisodium citrate (δ(13)C=-12.4‰). No SO4(2-) and δ(34)SSO4 changes were observed. In the AD experiment, clear fractionation of δ(13)CDIC during DIC consumption (εC=-7.8‰) and δ(34)SSO4 during sulfur use of FeS2-S (around 2‰), were confirmed through denitrification (εN=-12.5‰). Different pattern in isotopic change between HD and AD obtained on laboratory-scale are useful to recognize the type of denitrification occurring in the field. PMID:26529303

  5. Nitrogen, carbon, and sulfur isotopic change during heterotrophic (Pseudomonas aureofaciens) and autotrophic (Thiobacillus denitrificans) denitrification reactions

    NASA Astrophysics Data System (ADS)

    Hosono, Takahiro; Alvarez, Kelly; Lin, In-Tian; Shimada, Jun

    2015-12-01

    In batch culture experiments, we examined the isotopic change of nitrogen in nitrate (δ15NNO3), carbon in dissolved inorganic carbon (δ13CDIC), and sulfur in sulfate (δ34SSO4) during heterotrophic and autotrophic denitrification of two bacterial strains (Pseudomonas aureofaciens and Thiobacillus denitrificans). Heterotrophic denitrification (HD) experiments were conducted with trisodium citrate as electron donor, and autotrophic denitrification (AD) experiments were carried out with iron disulfide (FeS2) as electron donor. For heterotrophic denitrification experiments, a complete nitrate reduction was accomplished, however bacterial denitrification with T. denitrificans is a slow process in which, after seventy days nitrate was reduced to 40% of the initial concentration by denitrification. In the HD experiment, systematic change of δ13CDIC (from - 7.7‰ to - 12.2‰) with increase of DIC was observed during denitrification (enrichment factor εN was - 4.7‰), suggesting the contribution of C of trisodium citrate (δ13C = - 12.4‰). No SO42 - and δ34SSO4 changes were observed. In the AD experiment, clear fractionation of δ13CDIC during DIC consumption (εC = - 7.8‰) and δ34SSO4 during sulfur use of FeS2-S (around 2‰), were confirmed through denitrification (εN = - 12.5‰). Different pattern in isotopic change between HD and AD obtained on laboratory-scale are useful to recognize the type of denitrification occurring in the field.

  6. Sulfide-oxidizing autotrophic denitrification: an evaluation for nitrogen removal from anaerobically pretreated domestic sewage.

    PubMed

    Souza, Theo S O; Foresti, Eugenio

    2013-07-01

    Nitrogen removal from effluents of anaerobic reactors using conventional nitrification/denitrification processes depends on the availability of electron donors for denitrification. As sulfide is normally present in such effluents, autotrophic denitrification using sulfide can be an alternative to avoid or reduce the requirements of exogenous organic carbon sources. This study evaluated the application of sulfide-oxidizing autotrophic denitrification to anaerobically pretreated domestic sewage. A denitrifying reactor was fed with a mixture, at different proportions, of anaerobically pretreated (containing sulfides and residual organic matter) and nitrified (containing nitrates) effluents produced by reactors treating synthetic domestic sewage. Autotrophic denitrification was responsible for most of the nitrogen removal and coexisted with heterotrophic activity, resulting in high denitrification efficiencies. Efficient denitrification could be attained at a molar NO3 (-)/S(2-) ratio of 2.1, higher than values reported before, and this represents an important parameter for the strategic application of the process. Under the experimental conditions studied, autotrophic denitrification showed to be an efficient and feasible alternative to conventional denitrification using exogenous electron donors.

  7. Nitrogen, carbon, and sulfur isotopic change during heterotrophic (Pseudomonas aureofaciens) and autotrophic (Thiobacillus denitrificans) denitrification reactions.

    PubMed

    Hosono, Takahiro; Alvarez, Kelly; Lin, In-Tian; Shimada, Jun

    2015-12-01

    In batch culture experiments, we examined the isotopic change of nitrogen in nitrate (δ(15)NNO3), carbon in dissolved inorganic carbon (δ(13)CDIC), and sulfur in sulfate (δ(34)SSO4) during heterotrophic and autotrophic denitrification of two bacterial strains (Pseudomonas aureofaciens and Thiobacillus denitrificans). Heterotrophic denitrification (HD) experiments were conducted with trisodium citrate as electron donor, and autotrophic denitrification (AD) experiments were carried out with iron disulfide (FeS2) as electron donor. For heterotrophic denitrification experiments, a complete nitrate reduction was accomplished, however bacterial denitrification with T. denitrificans is a slow process in which, after seventy days nitrate was reduced to 40% of the initial concentration by denitrification. In the HD experiment, systematic change of δ(13)CDIC (from -7.7‰ to -12.2‰) with increase of DIC was observed during denitrification (enrichment factor εN was -4.7‰), suggesting the contribution of C of trisodium citrate (δ(13)C=-12.4‰). No SO4(2-) and δ(34)SSO4 changes were observed. In the AD experiment, clear fractionation of δ(13)CDIC during DIC consumption (εC=-7.8‰) and δ(34)SSO4 during sulfur use of FeS2-S (around 2‰), were confirmed through denitrification (εN=-12.5‰). Different pattern in isotopic change between HD and AD obtained on laboratory-scale are useful to recognize the type of denitrification occurring in the field.

  8. Denitrification of the polar winter stratosphere - Implications of SAM II cloud formation temperatures

    NASA Technical Reports Server (NTRS)

    Hamill, Patrick; Toon, O. B.

    1990-01-01

    The SAM II extinction profiles and the associated temperature profiles are used to determine the amount of denitrification of the winter polar stratospheres. Clear evidence of the denitrification process in the Antarctic data is seen. There are indications in the Arctic data that denitrification mechanisms may be at work there also. At the latitudes observed by the SAM II satellite system, denitrification begins before the formation of extensive ice clouds and may be due to sedimentation of nitric acid particles. However, the possibility of dinitrification by type II PSCs at latitudes not observed by SAM II cannot be excluded.

  9. Denitrification and inference of nitrogen sources in the karstic Floridan Aquifer

    USGS Publications Warehouse

    Heffernan, J.B.; Albertin, A.R.; Fork, M.L.; Katz, B.G.; Cohen, M.J.

    2011-01-01

    Aquifer denitrification is among the most poorly constrained fluxes in global and regional nitrogen budgets. The few direct measurements of denitrification in groundwaters provide limited information about its spatial and temporal variability, particularly at the scale of whole aquifers. Uncertainty in estimates of denitrification may also lead to underestimates of its effect on isotopic signatures of inorganic N, and thereby confound the inference of N source from these data. In this study, our objectives are to quantify the magnitude and variability of denitrification in the Upper Floridan Aquifer (UFA) and evaluate its effect on N isotopic signatures at the regional scale. Using dual noble gas tracers (Ne, Ar) to generate physical predictions of N2 gas concentrations for 112 observations from 61 UFA springs, we show that excess (i.e. denitrification-derived) N2 is highly variable in space and inversely correlated with dissolved oxygen (O2). Negative relationship between O2 and ??15NNO 3 across a larger dataset of 113 springs, well-constrained isotopic fractionation coefficients, and strong 15N: 18O covariation further support inferences of denitrification in this uniquely organic-matter-poor system. Despite relatively low average rates, denitrification accounted for 32% of estimated aquifer N inputs across all sampled UFA springs. Back-calculations of source ??15NNO 3 based on denitrification progression suggest that isotopically-enriched nitrate (NO3-) in many springs of the UFA reflects groundwater denitrification rather than urban- or animal-derived inputs. ?? Author(s) 2011.

  10. Estimates of sediment denitrification and its influence on the fate of nitrogen in Chesapeake Bay. Final report

    SciTech Connect

    Twilley, R.R.; Kemp, W.M.

    1987-08-01

    The variability of denitrification potentials in estuarine sediments was measured during October 15-18, 1984 at ten stations in Chesapeake Bay. Selected chemical and physical characteristics of the sediments were also measured to investigate factors that may regulate denitrification in the estuarine ecosystem. Denitrification potentials increased at higher concentrations of nitrate except for two stations. Mainstem bay stations lacked any significant denitrification potential. Estimated ranges of ambient denitrification rates suggest that they may vary as much spatially due to the kinetic nature of denitrification as seasonally due to differences in nitrate concentration.

  11. Community N and O isotope fractionation by sulfide-dependent denitrification and anammox in a stratified lacustrine water column

    NASA Astrophysics Data System (ADS)

    Wenk, Christine B.; Zopfi, Jakob; Blees, Jan; Veronesi, Mauro; Niemann, Helge; Lehmann, Moritz F.

    2014-01-01

    we do not yet understand the exact controls on the observed N (and O) isotope fractionation in the Lake Lugano north basin, our study implies that caution is advised when assuming canonical (i.e., high) N isotope effects for NO3- reduction and NH4+ oxidation in natural environments. In Lake Lugano, the community N (and O) isotope effects by sulfide-dependent denitrification and anammox in a natural ecosystem appear to be significantly lower than for organotrophic denitrification and aerobic ammonium oxidation.

  12. Anaerobic methane oxidation coupled to denitrification is the dominant methane sink in a deep lake

    PubMed Central

    Deutzmann, Joerg S.; Stief, Peter; Brandes, Josephin; Schink, Bernhard

    2014-01-01

    Anaerobic methane oxidation coupled to denitrification, also known as “nitrate/nitrite-dependent anaerobic methane oxidation” (n-damo), was discovered in 2006. Since then, only a few studies have identified this process and the associated microorganisms in natural environments. In aquatic sediments, the close proximity of oxygen- and nitrate-consumption zones can mask n-damo as aerobic methane oxidation. We therefore investigated the vertical distribution and the abundance of denitrifying methanotrophs related to Candidatus Methylomirabilis oxyfera with cultivation-independent molecular techniques in the sediments of Lake Constance. Additionally, the vertical distribution of methane oxidation and nitrate consumption zones was inferred from high-resolution microsensor profiles in undisturbed sediment cores. M. oxyfera-like bacteria were virtually absent at shallow-water sites (littoral sediment) and were very abundant at deep-water sites (profundal sediment). In profundal sediment, the vertical distribution of M. oxyfera-like bacteria showed a distinct peak in anoxic layers that coincided with the zone of methane oxidation and nitrate consumption, a strong indication for n-damo carried out by M. oxyfera-like bacteria. Both potential n-damo rates calculated from cell densities (660–4,890 µmol CH4⋅m−2⋅d−1) and actual rates calculated from microsensor profiles (31–437 µmol CH4⋅m−2⋅d−1) were sufficiently high to prevent methane release from profundal sediment solely by this process. Additionally, when nitrate was added to sediment cores exposed to anoxic conditions, the n-damo zone reestablished well below the sediment surface, completely preventing methane release from the sediment. We conclude that the previously overlooked n-damo process can be the major methane sink in stable freshwater environments if nitrate is available in anoxic zones. PMID:25472842

  13. Direct reading of electrocardiograms and respiration rates

    NASA Technical Reports Server (NTRS)

    Wise, J. P.

    1969-01-01

    Technique for reading heart and respiration rates is more accurate and direct than the previous method. Index of a plastic calibrated card is aligned with a point on the electrocardiogram. Complexes are counted as indicated on the card and heart or respiration rate is read directly from the appropriate scale.

  14. Photosynthesis and Respiration in a Jar.

    ERIC Educational Resources Information Center

    Buttner, Joseph K.

    2000-01-01

    Describes an activity that reduces the biosphere to a water-filled jar to simulate the relationship between cellular respiration, photosynthesis, and energy. Allows students in high school biology and related courses to explore quantitatively cellular respiration and photosynthesis in almost any laboratory setting. (ASK)

  15. Influence of aeration modes on leachate characteristic of landfills that adopt the aerobic-anaerobic landfill method.

    PubMed

    Wu, Chuanfu; Shimaoka, Takayuki; Nakayama, Hirofumi; Komiya, Teppei; Chai, Xiaoli; Hao, Yongxia

    2014-01-01

    As far as the optimal design, operation, and field application of the Aerobic-Anaerobic Landfill Method (AALM) are concerned, it is very important to understand how aeration modes (different combinations of aeration depth and air injection rate) affect the biodegradation of organic carbon and the transformation of nitrogen in landfill solid waste. Pilot-scale lysimeter experiments were carried out under different aeration modes to obtain detailed information regarding the influence of aeration modes on leachate characteristics. Results from these lysimeter experiments revealed that aeration at the bottom layer was the most effective for decomposition of organic carbon when compared with aeration at the surface or middle layers. Moreover, the air injection rate led to different nitrogen transformation patterns, unlike the lesser influence it has on organic carbon decomposition. Effective simultaneous nitrification and denitrification were observed for the aeration mode with a higher air injection rate (=1.0 L/min). On the other hand, the phenomenon of sequenced nitrification and denitrification could be observed when a low air injection rate (=0.5L/min.) was employed. Finally, it is concluded that, for AALM, air injection with a higher air injection rate at the deepest layer near the leachate collection pipe tends to accelerate the stabilization of landfill waste as defined in terms of the enhancement of denitrification as well as organic carbon decomposition.

  16. Modelling Soil respiration in agro-ecosystems

    NASA Astrophysics Data System (ADS)

    Delogu, Emilie; LeDantec, Valerie; Mordelet, Patrick; Buysse, Pauline; Aubinet, Marc; Pattey, Elizabeth

    2013-04-01

    A soil respiration model was developed to simulate soil respiration in crops on a daily time step. The soil heterotrophic respiration component was derived from Century (Parton et al., 1987). Soil organic carbon is divided into three major components including active, slow and passive soil carbon. Each pool has its own decomposition rate coefficient. Carbon flows between these pools are controlled by carbon inputs (crop residues), decomposition rate and microbial respiration loss parameters, both of which are a function of soil texture, soil temperature and soil water content. The model assumes that all C decompositions flows are associated with microbial activity and that microbial respiration occurs for each of these flows. Heterotrophic soil respiration is the sum of all these microbial respiration processes. To model the soil autotrophic respiration component, maintenance respiration is calculated from the nitrogen content and assuming an exponential relationship to account for temperature dependence (Ryan et al., 1991). Growth respiration is calculated assuming a dependence on both growth rate and construction cost of the considered organ (MacCree et al., 1982) A database, made of four different soil and climate conditions in mid-latitude was used to study the two components of the soil respiration model in wheat fields. Soil respiration were measured in three winter wheat fields at Lamasquère (43°49'N, 01°23'E, 2007) and Auradé (43°54'N, 01°10'E, 2008), South-West France and Lonzée (50°33'N, 4°44'E, 2007), Belgium, and in a spring wheat field at Ottawa (45°22'N, 75°43'W, 2007, 2011), Ontario, Canada. Manual closed chambers were used in the French sites. The Belgium and Canadian sites were equipped with automated closed chamber systems, which continuously collected 30-min soil respiration exchanges. All the sites were also equipped with eddy flux towers. When eddy flux data were collected over bare soil, the net ecosystem exchange (NEE) was equal to

  17. Aerobic microbial enhanced oil recovery

    SciTech Connect

    Torsvik, T.; Gilje, E.; Sunde, E.

    1995-12-31

    In aerobic MEOR, the ability of oil-degrading bacteria to mobilize oil is used to increase oil recovery. In this process, oxygen and mineral nutrients are injected into the oil reservoir in order to stimulate growth of aerobic oil-degrading bacteria in the reservoir. Experiments carried out in a model sandstone with stock tank oil and bacteria isolated from offshore wells showed that residual oil saturation was lowered from 27% to 3%. The process was time dependent, not pore volume dependent. During MEOR flooding, the relative permeability of water was lowered. Oxygen and active bacteria were needed for the process to take place. Maximum efficiency was reached at low oxygen concentrations, approximately 1 mg O{sub 2}/liter.

  18. Sleep and Respiration in Microgravity

    NASA Technical Reports Server (NTRS)

    West, John B.; Elliott, Ann R.; Prisk, G. Kim; Paiva, Manuel

    2003-01-01

    Sleep is often reported to be of poor quality in microgravity, and studies on the ground have shown a strong relationship between sleep-disordered breathing and sleep disruption. During the 16-day Neurolab mission, we studied the influence of possible changes in respiratory function on sleep by performing comprehensive sleep recordings on the payload crew on four nights during the mission. In addition, we measured the changes in the ventilatory response to low oxygen and high carbon dioxide in the same subjects during the day, hypothesizing that changes in ventilatory control might affect respiration during sleep. Microgravity caused a large reduction in the ventilatory response to reduced oxygen. This is likely the result of an increase in blood pressure at the peripheral chemoreceptors in the neck that occurs when the normally present hydrostatic pressure gradient between the heart and upper body is abolished. This reduction was similar to that seen when the subjects were placed acutely in the supine position in one-G. In sharp contrast to low oxygen, the ventilatory response to elevated carbon dioxide was unaltered by microgravity or the supine position. Because of the similarities of the findings in microgravity and the supine position, it is unlikely that changes in ventilatory control alter respiration during sleep in microgravity. During sleep on the ground, there were a small number of apneas (cessation of breathing) and hypopneas (reduced breathing) in these normal subjects. During sleep in microgravity, there was a reduction in the number of apneas and hypopneas per hour compared to preflight. Obstructive apneas virtually disappeared in microgravity, suggesting that the removal of gravity prevents the collapse of upper airways during sleep. Arousals from sleep were reduced in microgravity compared to preflight, and virtually all of this reduction was as a result of a reduction in the number of arousals from apneas and hypopneas. We conclude that any sleep

  19. 42 CFR 84.1134 - Respirator containers; minimum requirements.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ..., Fume, and Mist; Pesticide; Paint Spray; Powered Air-Purifying High Efficiency Respirators and... contamination of respirators which are not removed, and to prevent damage to respirators during transit....

  20. Assessing carbon and nitrogen removal in a novel anoxic-aerobic cyanobacterial-bacterial photobioreactor configuration with enhanced biomass sedimentation.

    PubMed

    de Godos, I; Vargas, V A; Guzmán, H O; Soto, R; García, B; García, P A; Muñoz, R

    2014-09-15

    The carbon and nitrogen removal potential of an innovative anoxic-aerobic photobioreactor configuration operated with both internal and external recyclings was evaluated under different cyanobacterial-bacterial sludge residence times (9-31 days) during the treatment of wastewaters with low C/N ratios. Under optimal operating conditions, the two-stage photobioreactor was capable of providing organic carbon and nitrogen removals over 95% and 90%, respectively. The continuous biomass recycling from the settler resulted in the enrichment and predominance of rapidly-settling cyanobacterial-bacterial flocs and effluent suspended solid concentrations lower than 35 mg VSS L(-1). These flocs exhibited sedimentation rates of 0.28-0.42 m h(-1) but sludge volumetric indexes of 333-430 ml/g. The decoupling between the hydraulic retention time and sludge retention time mediated by the external recycling also avoided the washout of nitrifying bacteria and supported process operation at biomass concentrations of 1000-1500 mg VSS L(-1). The addition of additional NaHCO3 to the process overcame the CO2 limitation resulting from the intense competition for inorganic carbon between cyanobacteria and nitrifying bacteria in the photobioreactor, which supported the successful implementation of a nitrification-denitrification process. Unexpectedly, this nitrification-denitrification process occurred both simultaneously in the photobioreactor alone (as a result of the negligible dissolved oxygen concentrations) and sequentially in the two-stage anoxic-aerobic configuration with internal NO3(-)/NO2(-) recycling. PMID:24880959

  1. Denitrification and N2 fixation in the Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Deutsch, Curtis; Gruber, Nicolas; Key, Robert M.; Sarmiento, Jorge L.; Ganachaud, Alexandre

    2001-06-01

    We establish the fixed nitrogen budget of the Pacific Ocean based on nutrient fields from the recently completed World Ocean Circulation Experiment (WOCE). The budget includes denitrification in the water column and sediments, nitrogen fixation, atmospheric and riverine inputs, and nitrogen divergence due to the large-scale circulation. A water column denitrification rate of 48±5 Tg N yr -1 is calculated for the Eastern Tropical Pacific using N* [Gruber and Sarmiento, 1997] and water mass age tracers. On the basis of rates in the literature, we estimate sedimentary denitrification to remove an additional 15±3 Tg N yr-1. We then calculate the total nitrogen divergence due to the large scale circulation through the basin, composed of flows through a zonal transect at 32°S, and through the Indonesian and Bering straits. Adding atmospheric deposition and riverine fluxes results in a net divergence of nitrogen from the basin of -4±12 Tg N yr-1. Pacific nitrogen fixation can be extracted as a residual component of the total budget, assuming steady state. We find that nitrogen fixation would have to contribute 59±14 Tg N yr-1 in order to balance the Pacific nitrogen budget. This result is consistent with the tentative global extrapolations of Gruber and Sarmiento [1997], based on nitrogen fixation rates estimated for the North Atlantic. Our estimated mean areal fixation rate is within the range of direct and geochemical rate estimates from a single location near Hawaii [Karl et al., 1997]. Pacific nitrogen fixation occurs primarily in the western part of the subtropical gyres where elevated N* signals are found. These regions are also supplied with significant amounts of iron via atmospheric dust deposition, lending qualitative support to the hypothesis that nitrogen fixation is regulated in part by iron suppy.

  2. Sulfide-inhibition of mitochondrial respiration at very low oxygen concentrations.

    PubMed

    Matallo, J; Vogt, J; McCook, O; Wachter, U; Tillmans, F; Groeger, M; Szabo, C; Georgieff, M; Radermacher, P; Calzia, E

    2014-09-15

    Our aim was to study the ability of an immortalized cell line (AMJ2-C11) to sustain aerobic cell respiration at decreasing oxygen concentrations under continuous sulfide exposure. We assumed that the rate of elimination of sulfide through the pathway linked to the mitochondrial respiratory chain and therefore operating under aerobic conditions, should decrease with limiting oxygen concentrations. Thus, sulfide's inhibition of cellular respiration would occur faster under continuous sulfide exposure when the oxygen concentration is in the very low range. The experiments were performed with an O2K-oxygraph (Oroboros Instruments) by suspending 0.5-1×10(6) cells in 2 ml of continuously stirred respiration medium at 37 °C and calculating the oxygen flux (JO2) as the negative derivative of the oxygen concentration in the medium. The cells were studied in two different metabolic states, namely under normal physiologic respiration (1) and after uncoupling of mitochondrial respiration (2). Oxygen concentration was controlled by means of a titration-injection pump, resulting in average concentration values of 0.73±0.05 μM, 3.1±0.2 μM, and 6.2±0.2 μM. Simultaneously we injected a 2 mM Na2S solution at a continuous rate of 10 μl/s in order to quantify the titration-time required to reduce the JO2 to 50% of the initial respiratory activity. Under the lowest oxygen concentration this effect was achieved after 3.5 [0.3;3.5] and 11.7 [6.2;21.2]min in the uncoupled and coupled state, respectively. This time was statistically significantly shorter when compared to the intermediate and the highest O2 concentrations tested, which yielded values of 24.6 [15.5;28.1]min (coupled) and 35.9 [27.4;59.2]min (uncoupled), as well as 42.4 [27.5;42.4]min (coupled) and 51.5 [46.4;51.7]min (uncoupled). All data are medians [25%, and 75% percentiles]. Our results confirm that the onset of inhibition of cell respiration by sulfide occurs earlier under a continuous exposure when approaching

  3. Temperature response of denitrification and anammox reveals the adaptation of microbial communities to in situ temperatures in permeable marine sediments that span 50° in latitude

    NASA Astrophysics Data System (ADS)

    Canion, A.; Kostka, J. E.; Gihring, T. M.; Huettel, M.; van Beusekom, J. E. E.; Gao, H.; Lavik, G.; Kuypers, M. M. M.

    2014-01-01

    Despite decades of research on the physiology and biochemistry of nitrate/nitrite-respiring microorganisms, little is known regarding their metabolic response to temperature, especially under in situ conditions. The temperature regulation of microbial communities that mediate anammox and denitrification was investigated in near shore permeable sediments at polar, temperate, and subtropical sites with annual mean temperatures ranging from -5 to 23 °C. Total N2 production rates were determined using the isotope pairing technique in intact core incubations under diffusive and simulated advection conditions and ranged from 2 to 359 μmol N m-2 d-1. For the majority of sites studied, N2 removal was 2-7 times more rapid under simulated advective flow conditions. Anammox comprised 6-14% of total N2 production at temperate and polar sites and was not detected at the subtropical site. Potential rates of denitrification and anammox were determined in anaerobic slurries in a temperature gradient block incubator across a temperature range of -1 °C to 42 °C. The highest optimum temperature (Topt) for denitrification was 36 °C and was observed in subtropical sediments, while the lowest Topt of 21 °C was observed at the polar site. Seasonal variation in the Topt was observed at the temperate site with values of 26 and 34 °C in winter and summer, respectively. The Topt values for anammox were 9 and 26 °C at the polar and temperate sites, respectively. The results demonstrate adaptation of denitrifying communities to in situ temperatures in permeable marine sediments across a wide range of temperatures, whereas marine anammox bacteria may be predominately psychrophilic to psychrotolerant. The adaptation of microbial communities to in situ temperatures suggests that the relationship between temperature and rates of N removal is highly dependent on community structure.

  4. Methods to determine aerobic endurance.

    PubMed

    Bosquet, Laurent; Léger, Luc; Legros, Patrick

    2002-01-01

    Physiological testing of elite athletes requires the correct identification and assessment of sports-specific underlying factors. It is now recognised that performance in long-distance events is determined by maximal oxygen uptake (V(2 max)), energy cost of exercise and the maximal fractional utilisation of V(2 max) in any realised performance or as a corollary a set percentage of V(2 max) that could be endured as long as possible. This later ability is defined as endurance, and more precisely aerobic endurance, since V(2 max) sets the upper limit of aerobic pathway. It should be distinguished from endurance ability or endurance performance, which are synonymous with performance in long-distance events. The present review examines methods available in the literature to assess aerobic endurance. They are numerous and can be classified into two categories, namely direct and indirect methods. Direct methods bring together all indices that allow either a complete or a partial representation of the power-duration relationship, while indirect methods revolve around the determination of the so-called anaerobic threshold (AT). With regard to direct methods, performance in a series of tests provides a more complete and presumably more valid description of the power-duration relationship than performance in a single test, even if both approaches are well correlated with each other. However, the question remains open to determine which systems model should be employed among the several available in the literature, and how to use them in the prescription of training intensities. As for indirect methods, there is quantitative accumulation of data supporting the utilisation of the AT to assess aerobic endurance and to prescribe training intensities. However, it appears that: there is no unique intensity corresponding to the AT, since criteria available in the literature provide inconsistent results; and the non-invasive determination of the AT using ventilatory and heart rate

  5. Evaluation of wastewater treatment in a novel anoxic-aerobic algal-bacterial photobioreactor with biomass recycling through carbon and nitrogen mass balances.

    PubMed

    Alcántara, Cynthia; Domínguez, Jesús M; García, Dimas; Blanco, Saúl; Pérez, Rebeca; García-Encina, Pedro A; Muñoz, Raúl

    2015-09-01

    Algal-bacterial symbiosis, implemented in an innovative anoxic-aerobic photobioreactor configuration with biomass recycling, supported an efficient removal of total organic carbon (86-90%), inorganic carbon (57-98%) and total nitrogen (68-79%) during synthetic wastewater treatment at a hydraulic and sludge retention times of 2 days and 20 days, respectively. The availability of inorganic carbon in the photobioreactor, determined by its supply in the wastewater and microalgae activity, governed the extent of nitrogen removal by assimilation or nitrification-denitrification. Unexpectedly, nitrate production was negligible despite the high dissolved oxygen concentrations, denitrification being only based on nitrite reduction. Biomass recycling resulted in the enrichment of rapidly settling algal flocs, which supported effluent total suspended solid concentrations below the European Union maximum discharge limits. Finally, the maximum nitrous oxide emissions recorded were far below the emission factors reported for wastewater treatment plants, confirming the environmental sustainability of this innovative photobioreactor in terms of global warming impact.

  6. Isotopologue signatures of N2O from denitrification in soil

    NASA Astrophysics Data System (ADS)

    Well, R.; Flessa, H.

    2009-04-01

    There is few information on N2 fluxes from denitrification in the field, because this process is difficult to measure in situ. Isotopologue signatures of N2O such as δ18O, average δ15N (δ15Nbulk) and 15N site preference (SP = difference in δ15N between the central and peripheral N positions of the asymmetric N2O molecule) can be used to constrain the atmospheric N2O budget and to characterize N2O turnover processes including N2O reduction to N2. However, the use of this approach to study N2O dynamics in soils requires knowledge of isotopologue fractionation factors (ɛ) for the various partial processes involved, e.g. N2O production by nitrification or denitrification, N2O reduction by denitrification and diffusive transport. The aim of our study was to investigate whether isotopologue signatures of soil-emitted N2O can be used to estimate N2O reduction, and accordingly N2 formation. Two arable soils were incubated in the laboratory under varying conditions in order to manipulate the partial processes of N2O turnover. ɛ of δ18O, δ15Nbulk and SP was determined in experiments, where only one of the partial processes was governing the isotopic signature of N2O in the incubation system of the respective treatment. ɛ of N2O reduction to N2 was derived by (i) comparing treatments with and without inhibition of N2O reduction (indirect approach) or (ii) by monitoring the time course of isotopic signatures of N2O applied to the headspace of NO3--depleted anaerobic soil (direct approach). Moreover, we incubated the soils under conditions favoring denitrification (high moisture, low O2 level, NO3- fertilization) and monitored isotopic signatures of emitted N2O. In parallel experiments with 15N-labeled NO3- pool we measured N2 fluxes directly. Isotopologue signatures were compared with 15N2 flux data in order to check their relationship with N2 production. References Well R, Kurganova, I., Lopes, V., Flessa H. (2006), Isotopomer signatures of N2O emitted from an arable

  7. Nitrous oxide emission from denitrification in stream and river networks

    SciTech Connect

    Beaulieu, Jake; Tank, Jennifer; Hamilton, Stephen; Wollheim, Wilfred; Hall, Robert; Mulholland, Patrick J; Peterson, Bruce; Ashkenas, Linda; Cooper, Lee W; Dahm, Cliff; Dodds, Walter; Grimm, Nancy; Johnson, Sherri; McDowell, William; Poole, Geoffrey C.; Valett, H. Maurice; Arango, Clay; Bernot, Melody; Burgin, Amy; Crenshaw, Chelsea; Helton, Ashley; Johnson, Laura; O'Brien, Jon; Potter, Jody; Sheibley, Rich; Sobota, Daniel; Thomas, Suzanne

    2011-01-01

    Nitrous oxide (N{sub 2}O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N{sub 2}O via microbial denitrification that converts N to N{sub 2}O and dinitrogen (N{sub 2}). The fraction of denitrified N that escapes as N{sub 2}O rather than N{sub 2} (i.e., the N{sub 2}O yield) is an important determinant of how much N{sub 2}O is produced by river networks, but little is known about the N{sub 2}O yield in flowing waters. Here, we present the results of whole-stream {sup 15}N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N{sub 2}O at rates that increase with stream water nitrate (NO{sub 3}{sup -}) concentrations, but that <1% of denitrified N is converted to N{sub 2}O. Unlike some previous studies, we found no relationship between the N{sub 2}O yield and stream water NO{sub 3}{sup -}. We suggest that increased stream NO{sub 3}{sup -} loading stimulates denitrification and concomitant N{sub 2}O production, but does not increase the N{sub 2}O yield. In our study, most streams were sources of N{sub 2}O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg {center_dot} y{sup -1} of anthropogenic N inputs to N{sub 2}O in river networks, equivalent to 10% of the global anthropogenic N{sub 2}O emission rate. This estimate of stream and river N{sub 2}O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change.

  8. Isotopic signals of denitrification in a northern hardwood forested catchment

    NASA Astrophysics Data System (ADS)

    Wexler, Sarah; Goodale, Christine

    2013-04-01

    Water samples from streams, groundwater and precipitation were collected during summer from the hydrologic reference watershed (W3) at Hubbard Brook Experimental Forest in the White Mountains, New Hampshire, and analysed for d15N-NO3 and d18O-NO3. Despite very low nitrate concentrations (<0.5 to 8.8 uM NO3-) dual-isotopic signals of sources and processes were clearly distinguishable. The isotopic composition of nitrate from shallow groundwater showed evidence of dual isotopic fractionation in line with denitrification, with a positive relationship between nitrogen and oxygen isotopic composition, a regression line slope of 0.76 (r2 = 0.68), and an empirical isotope enrichment factor of ɛP-S 15N-NO3 -12.7%. The isotopic composition of riparian groundwater nitrate from time-series samples showed variation in processes over a small spatial scale. The expected isotopic composition of nitrate sources in the watershed was used to distinguish nitrate in rain and nitrate from nitrification of both rainfall ammonium and ammonium from mineralised soil organic nitrogen. Evidence of oxygen exchange with water during nitrification was seen in the isotopic composition of stream and shallow groundwater nitrate. The isotopic composition of streamwater nitrate following a period of storms indicated that 25% of nitrate in the streamwater was of atmospheric origin. This suggests rapid infiltration of rainfall via vertical bypass flow to the saturated zone, enabling transport of atmospheric nitrate to the stream channels. Across the Hubbard Brook basin, the isotopic composition of nitrate from paired samples from watersheds 4-7 indicated a switch between a nitrification and assimilation dominated system, to a system influenced by rainfall nitrogen inputs and denitrification. The dual isotope approach has revealed evidence of denitrification of nitrate from different sources at low concentrations at Hubbard Brook during summer. This isotopic evidence deepens our understanding of the

  9. The occurrence of denitrification in extremely halophilic bacteria

    NASA Technical Reports Server (NTRS)

    Mancinelli, R. L.; Hochstein, L. I.

    1986-01-01

    The ability of Halobacterium vallismortis, Halobacterium mediterranei and Halobacterium marismortui (Ginzburg strain) to grow anaerobically and denitrify was determined. Each organism grew anaerobically only in the presence of nitrate. H. marismortui produced nitrite and dinitrogen from nitrate during exponential growth. However, as the culture entered stationary phase, dinitrogen production ceased and nitrous oxide was detected. H. vallismortis produced nitrous oxide and dinitrogen during exponential growth, with dinitrogen production ceasing at the onset of stationary phase. H. mediterranei produced dinitrogen during exponential growth and did not produce nitrous oxide. These results confirm the occurrence of denitrification in the halobacteria.

  10. A diagnostic for denitrification in the winter polar stratospheres

    NASA Technical Reports Server (NTRS)

    Fahey, D. W.; Solomon, S.; Kawa, S. R.; Loewenstein, M.; Podolske, J. R.; Strahan, S. E.; Chan, K. R.

    1990-01-01

    The pairwise correlation of NO(y) and N2O data from the Southern and Northern Hemispheres is presented. Both data sets show a linear correlation region, defined as a reference state, and regions of denitrification where the correlation breaks down. Using two-dimensional photochemical model simulations of the atmosphere, a similar linear correlation is found between NO(y) and N2O, thereby establishing a theoretical framework for the reference state. This general approach, which can be extended to other pairs of molecules, should prove to be powerful in further comparisons of aircraft data with numerical models.

  11. Isotopic evidence for an aerobic nitrogen cycle in the latest Archean.

    PubMed

    Garvin, Jessica; Buick, Roger; Anbar, Ariel D; Arnold, Gail L; Kaufman, Alan J

    2009-02-20

    The nitrogen cycle provides essential nutrients to the biosphere, but its antiquity in modern form is unclear. In a drill core though homogeneous organic-rich shale in the 2.5-billion-year-old Mount McRae Shale, Australia, nitrogen isotope values vary from +1.0 to +7.5 per mil (per thousand) and back to +2.5 per thousand over approximately 30 meters. These changes evidently record a transient departure from a largely anaerobic to an aerobic nitrogen cycle complete with nitrification and denitrification. Complementary molybdenum abundance and sulfur isotopic values suggest that nitrification occurred in response to a small increase in surface-ocean oxygenation. These data imply that nitrifying and denitrifying microbes had already evolved by the late Archean and were present before oxygen first began to accumulate in the atmosphere.

  12. Evaluation of methyl fluoride and dimethyl ether as inhibitors of aerobic methane oxidation

    USGS Publications Warehouse

    Oremland, R.S.; Culbertson, C.W.

    1992-01-01

    Methyl fluoride (MF) and dimethyl ether (DME) were effective inhibitors of aerobic methanotrophy in a variety of soils. MF and DME blocked consumption of CH4 as well as the oxidation of 14CH4 to 14CO2, but neither MF nor DME affected the oxidation of [14C]methanol or [14C]formate to 14CO2. Cooxidation of ethane and propane by methane-oxidizing soils was also inhibited by MF. Nitrification (ammonia oxidation) in soils was inhibited by both MF and DME. Production of N2O via nitrification was inhibited by MF; however, MF did not affect N2O production associated with denitrification. Methanogenesis was partially inhibited by MF but not by DME. Methane oxidation was ~100-fold more sensitive to MF than was methanogenesis, indicating that an optimum concentration could be employed to selectively block methanotrophy. MF inhibited methane oxidation by cell suspensions of Methylococcus capsulatus; however, DME was a much less effective inhibitor.

  13. Removal of ammonia nitrogen from wastewater using an aerobic cathode microbial fuel cell.

    PubMed

    Zhang, Xiaoyan; Zhu, Feng; Chen, Li; Zhao, Qin; Tao, Guanhong

    2013-10-01

    A new system for removing ammonia nitrogen was developed, which integrated a microbial fuel cell (MFC) with an aerobic bioreactor. A three-chamber reactor consisted of an anode chamber, a middle chamber and a cathode chamber. The chambers were separated by an anion exchange membrane and a cation exchange membrane (CEM), respectively. Driven by the power generated by the MFC, NH4(+) in the middle chamber could migrate through CEM into the cathode chamber. The migrated NH4(+) further removed via biological denitrification in the cathode chamber. Up to 90.2% of total NH4(+)-N could be removed with an initial concentration of 100 mg/L in 98 h. Affecting factors were investigated on the removal efficiency including cathode surface area, electrode spacing, chemical oxygen demand concentration, dissolved oxygen concentration, and NH4(+)-N concentration. The system was characterized by simple configuration and high efficiency, and was successfully applied to the treatment of brewery wastewater.

  14. Characterizing the transformation and transfer of nitrogen during the aerobic treatment of organic wastes and digestates.

    PubMed

    Zeng, Yang; de Guardia, Amaury; Daumoin, Mylène; Benoist, Jean-Claude

    2012-12-01

    The transformation and transfer of nitrogen during the aerobic treatment of seven wastes were studied in ventilated air-tight 10-L reactors at 35 °C. Studied wastes included distinct types of organic wastes and their digestates. Ammonia emissions varied depending on the kind of waste and treatment conditions. These emissions accounted for 2-43% of the initial nitrogen. Total nitrogen losses, which resulted mainly from ammonia emissions and nitrification-denitrification, accounted for 1-76% of the initial nitrogen. Ammonification was the main process responsible for nitrogen losses. An equation which allows estimating the ammonification flow of each type of waste according to its biodegradable carbon and carbon/nitrogen ratio was proposed. As a consequence of the lower contribution of storage and leachate rates, stripping and nitrification rates of ammonia nitrogen were negatively correlated. This observation suggests the possibility of promotingnitrification in order to reduce ammonia emissions.

  15. Glycolysis and mitochondrial respiration in mouse LDHC-null sperm.

    PubMed

    Odet, Fanny; Gabel, Scott; London, Robert E; Goldberg, Erwin; Eddy, Edward M

    2013-04-01

    We demonstrated previously that a knockout (KO) of the lactate dehydrogenase type C (Ldhc) gene disrupted male fertility and caused a considerable reduction in sperm glucose consumption, ATP production, and motility. While that study used mice with a mixed genetic background, the present study used C57BL/6 (B6) and 129S6 (129) Ldhc KO mice. We found that B6 KO males were subfertile and 129 KO males were infertile. Sperm from 129 wild-type (WT) mice have a lower glycolytic rate than sperm from B6 WT mice, resulting in a greater reduction in ATP production in 129 KO sperm than in B6 KO sperm. The lower glycolytic rate in 129 sperm offered a novel opportunity to examine the role of mitochondrial respiration in sperm ATP production and motility. We observed that in media containing a mitochondrial substrate (pyruvate or lactate) as the sole energy source, ATP levels and progressive motility in 129 KO sperm were similar to those in 129 WT sperm. However, when glucose was added, lactate was unable to maintain ATP levels or progressive motility in 129 KO sperm. The rate of respiration (ZO2) was high when 129 KO or WT sperm were incubated with lactate alone, but addition of glucose caused a reduction in ZO2. These results indicate that in the absence of glucose, 129 sperm can produce ATP via oxidative phosphorylation, but in the presence of glucose, oxidative phosphorylation is suppressed and the sperm utilize aerobic glycolysis, a phenomenon known as the Crabtree effect.

  16. Effect of fire residues (ash and char) on microbial activity, respiration and methanogenesis in three subtropical wetland soils

    NASA Astrophysics Data System (ADS)

    Medvedeff, C.; Hogue, B.; Inglett, P.

    2011-12-01

    Prescribed fire is a common restoration and maintenance technique in the southern United States. Prescribed burns coupled with frequent natural fires in South Florida can have devastating effects on ecosystem function. To determine the effect fire residues have on carbon biogeochemical cycling litter material was obtained from two restored and one native marl wetland in Everglades National Park and manipulated in a laboratory setting to produce ash and vegetation derived char. Based on vegetation biomass removal pre and post fire (insitu) appropriate aliquots of each fire residue was added to experimental microcosms as a soil amendment. Soil enzymes (β-glucosidase, cellobiohydrolase, phosphatase, bis-phosphate and leucine amino peptidase), aerobic and anaerobic respiration (CO2) potentials, extractable C and methanogenesis were measured over a 25 day period. Regardless of site C enzymes responded to both amendments within 5 days of addition. Similarly amended soil contained more extractable carbon in the reference and one of the restored sites. In the restored sites ash and char inhibited methanogenesis, had no effect on anaerobic CO2 potentials, but stimulated aerobic respiration after ten days. In contrast, within the first ten days phosphatase enzyme activity was lower in the ash treatment when compared to the control treatment and stimulation of aerobic respiration was observed in both treatment soils. After ten days ash stimulated methanogenic processing while suppressing anaerobic CO2 production suggesting methanogens in this ecosystem may be dependant on usable carbon substrates derived from aerobic microbial processing. This study illustrates the variable response of C parameters to complete and incomplete combusted materials produced from both prescribed and natural fires with particular importance to fire adapted ecosystems.

  17. Characterizing the transformation and transfer of nitrogen during the aerobic treatment of organic wastes and digestates

    SciTech Connect

    Zeng Yang; Guardia, Amaury de; Daumoin, Mylene; Benoist, Jean-Claude

    2012-12-15

    Highlights: Black-Right-Pointing-Pointer Ammonia emissions varied depending on the nature of wastes and the treatment conditions. Black-Right-Pointing-Pointer Nitrogen losses resulted from ammonia emissions and nitrification-denitrification. Black-Right-Pointing-Pointer Ammonification can be estimated from biodegradable carbon and carbon/nitrogen ratio. Black-Right-Pointing-Pointer Ammonification was the main process contributing to N losses. Black-Right-Pointing-Pointer Nitrification rate was negatively correlated to stripping rate of ammonia nitrogen. - Abstract: The transformation and transfer of nitrogen during the aerobic treatment of seven wastes were studied in ventilated air-tight 10-L reactors at 35 Degree-Sign C. Studied wastes included distinct types of organic wastes and their digestates. Ammonia emissions varied depending on the kind of waste and treatment conditions. These emissions accounted for 2-43% of the initial nitrogen. Total nitrogen losses, which resulted mainly from ammonia emissions and nitrification-denitrification, accounted for 1-76% of the initial nitrogen. Ammonification was the main process responsible for nitrogen losses. An equation which allows estimating the ammonification flow of each type of waste according to its biodegradable carbon and carbon/nitrogen ratio was proposed. As a consequence of the lower contribution of storage and leachate rates, stripping and nitrification rates of ammonia nitrogen were negatively correlated. This observation suggests the possibility of promotingnitrification in order to reduce ammonia emissions.

  18. Biodegradation of three- and four-ring polycyclic aromatic hydrocarbons under aerobic and denitrifying conditions

    SciTech Connect

    McNally, D.L.; Mihelcic, J.R.; Lueking, D.R.

    1998-09-01

    PAHs are thought to be particularly persistent in environments where anaerobic conditions exist. This study presents evidence for the biodegradation of three- and four-ringed PAHs (anthracene, phenanthrene, and pyrene) under strict anaerobic, denitrifying conditions. Three pseudomonad strains, isolated from contrasting environments, were used in this study. All three strains were known PAH degraders and denitrifiers. Degradation proceeded to nondetectable levels in 12--80 h for anthracene, 12--44 h for phenanthrene, and 24--72 h for pyrene. The rates of anaerobic degradation were typically slower than under aerobic conditions in almost all cases, except for strain SAG-R which had similar removal rates for all three and four-ring PAHs. Denitrification activity was verified by monitoring nitrate utilization and nitrous oxide production. Although none of the pseudomonads were adapted to the denitrifying conditions, only the pseudomonad isolated from a noncontaminated site consistently exhibited an adaptation period which approximated 12 h. This study supports growing evidence that the degradation of aromatic hydrocarbons coupled to denitrification may be an important factor affecting the fate of these compounds in natural and engineered systems.

  19. Organic and nitrogen removal from landfill leachate in aerobic granular sludge sequencing batch reactors

    SciTech Connect

    Wei Yanjie; Ji Min; Li Ruying; Qin Feifei

    2012-03-15

    Highlights: Black-Right-Pointing-Pointer Aerobic granular sludge SBR was used to treat real landfill leachate. Black-Right-Pointing-Pointer COD removal was analyzed kinetically using a modified model. Black-Right-Pointing-Pointer Characteristics of nitrogen removal at different ammonium inputs were explored. Black-Right-Pointing-Pointer DO variations were consistent with the GSBR performances at low ammonium inputs. - Abstract: Granule sequencing batch reactors (GSBR) were established for landfill leachate treatment, and the COD removal was analyzed kinetically using a modified model. Results showed that COD removal rate decreased as influent ammonium concentration increasing. Characteristics of nitrogen removal at different influent ammonium levels were also studied. When the ammonium concentration in the landfill leachate was 366 mg L{sup -1}, the dominant nitrogen removal process in the GSBR was simultaneous nitrification and denitrification (SND). Under the ammonium concentration of 788 mg L{sup -1}, nitrite accumulation occurred and the accumulated nitrite was reduced to nitrogen gas by the shortcut denitrification process. When the influent ammonium increased to a higher level of 1105 mg L{sup -1}, accumulation of nitrite and nitrate lasted in the whole cycle, and the removal efficiencies of total nitrogen and ammonium decreased to only 35.0% and 39.3%, respectively. Results also showed that DO was a useful process controlling parameter for the organics and nitrogen removal at low ammonium input.

  20. Inspiratory flow rates during hard work when breathing through different respirator inhalation and exhalation resistances.

    PubMed

    Coyne, Karen; Caretti, David; Scott, William; Johnson, Arthur; Koh, Frank

    2006-09-01

    There has been a long-standing debate regarding the adequacy of airflow rates used in respirator certification testing and whether these test flow rates underestimate actual values. This study investigated breath by breath inspiratory peak flow rate, minute ventilation, and instantaneous flow rates of eight young, healthy volunteers walking on a treadmill at 80-85% of maximal aerobic capacity until exhaustion while wearing an air-purifying respirator with one of eight combinations of inhalation and exhalation resistance. An analysis of variance was performed to identify differences among the eight conditions. Scheffe's post hoc analysis indicated which means differed. The group of conditions with the highest average value for each parameter was identified and considered to represent a worst-case scenario. Data was reported for these conditions. A Gaussian distribution was fit to the data and the 99.9% probability levels determined. The 99.9% probability level for the peak and instantaneous flow rates were 374 L/min and 336 L/min, respectively. The minute ventilation distribution was not Gaussian. Less than 1% of the recorded minute ventilations exceeded 135 L/min. Instantaneous flow rates exceeded the National Institute for Occupational Safety and Health's respirator test standards of 64, 85, and 100 L/min constant flow 91%, 87%, and 82% of the time, respectively. The recorded minute ventilations exceeded the 40 L/min minute ventilation test standard (for tests with a sinusoidal flow pattern) 100% of the time. This study showed that young, healthy respirator wearers generated peak flow rates, minute ventilations, and instantaneous flow rates that consistently exceeded current test standards. Their flow rates should be higher than those of a respirator wearer performing occupational work and could be considered upper limits. Testing respirators and respirator cartridges using a sinusoidal breathing pattern with a minute ventilation of 135 L/min (peak flow rate

  1. Respirator physiological effects under simulated work conditions.

    PubMed

    Bansal, Siddharth; Harber, Philip; Yun, David; Liu, David; Liu, Yihang; Wu, Samantha; Ng, David; Santiago, Silverio

    2009-04-01

    This study compared the physiological impacts of two respirator types in simulated work conditions. Fifty-six subjects included normal volunteers and persons with mild respiratory impairments (chronic rhinitis, mild COPD, and mild asthma). Respiratory parameters and electrocardiogram were measured using respiratory inductive plethysmography while performing eight work tasks involving low to moderate exertion using two respirators: (1) a dual cartridge half face mask (HFM) respirator, and (2) the N95. Mixed model regression analyses evaluating the effect of task and respirator type showed that task affected tidal volume, minute ventilation, breathing frequency and heart rate; all were greater in heavier tasks. Although respirator type did not affect respiratory volume parameters and flow rates, the HFM led to increase in the inspiratory time, reduction of the expiratory time, and increase in the duty cycle in comparison with the N95. The magnitude of differences was relatively small. The results suggest that most individuals, including persons with mild respiratory impairments, will physiologically tolerate either type of respirator at low to moderate exertion tasks. However, because effective protection depends on proper use, differences in subjective effect may have greater impact than physiological differences. Using respirators may be feasible on a widespread basis if necessary for maintaining essential services in the face of widespread concern about an infectious or terrorist threat. PMID:19180375

  2. Transcriptional and metabolic regulation of denitrification in Paracoccus denitrificans allows low but significant activity of nitrous oxide reductase under oxic conditions.

    PubMed

    Qu, Zhi; Bakken, Lars R; Molstad, Lars; Frostegård, Åsa; Bergaust, Linda L

    2016-09-01

    Oxygen is known to repress denitrification at the transcriptional and metabolic levels. It has been a common notion that nitrous oxide reductase (N2 OR) is the most sensitive enzyme among the four N-oxide reductases involved in denitrification, potentially leading to increased N2 O production under suboxic or fluctuating oxygen conditions. We present detailed gas kinetics and transcription patterns from batch culture experiments with Paracoccus denitrificans, allowing in vivo estimation of e(-) -flow to O2 and N2 O under various O2 regimes. Transcription of nosZ took place concomitantly with that of narG under suboxic conditions, whereas transcription of nirS and norB was inhibited until O2 levels approached 0 μM in the liquid. Catalytically functional N2 OR was synthesized and active in aerobically raised cells transferred to vials with 7 vol% O2 in headspace, but N2 O reduction rates were 10 times higher when anaerobic pre-cultures were subjected to the same conditions. Upon oxygen exposure, there was an incomplete and transient inactivation of N2 OR that could be ascribed to its lower ability to compete for electrons compared with terminal oxidases. The demonstrated reduction of N2 O at high O2 partial pressure and low N2 O concentrations by a bacterium not known as a typical aerobic denitrifier may provide one clue to the understanding of why some soils appear to act as sinks rather than sources for atmospheric N2 O. PMID:26568281

  3. Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community.

    PubMed

    van den Heuvel, R N; van der Biezen, E; Jetten, M S M; Hefting, M M; Kartal, B

    2010-12-01

    Soil denitrification is a major source of nitrous oxide emission that causes ozone depletion and global warming. Low soil pH influences the relative amount of N₂O produced and consumed by denitrification. Furthermore, denitrification is strongly inhibited in pure cultures of denitrifying microorganisms below pH 5. Soils, however, have been shown to denitrify at pH values as low as pH 3. Here we used a continuous bioreactor to investigate the possibility of significant denitrification at low pH under controlled conditions with soil microorganisms and naturally available electron donors. Significant NO₃⁻ and N₂O reduction were observed for 3 months without the addition of any external electron donor. Batch incubations with the enriched biomass showed that low pH as well as low electron donor availability promoted the relative abundance of N₂O as denitrification end-product. Molecular analysis of the enriched biomass revealed that a Rhodanobacter-like bacterium dominated the community in 16S rRNA gene libraries as well as in FISH microscopy during the highest denitrification activity in the reactor. We conclude that denitrification at pH 4 with natural electron donors is possible and that a Rhodanobacter species may be one of the microorganisms involved in acidic denitrification in soils.

  4. Large differences in potential denitrification and sediment microbial communities across the Laurentian great lakes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Lakes can be important sites for removal of reactive nitrogen (N) through denitrification, but spatial heterogeneity in denitrification rates can be high, and our understanding of factors controlling the capacity of lakes to remove excess N is incomplete. In oligotrophic Lake Superior, a century-lon...

  5. Hydraulic properties of four-year old woodchips from a denitrification bed

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Denitrification beds are being used to reduce the transport of water-soluble nitrate via subsurface drainage systems to surface water. Only recently has the non-linearity of water flow through woodchips been ascertained. To successfully design and model denitrification beds for optimum nitrate remov...

  6. Modeling nitrous oxide production and reduction in soil through explicit representation of denitrification enzyme kinetics.

    PubMed

    Zheng, Jianqiu; Doskey, Paul V

    2015-02-17

    An enzyme-explicit denitrification model with representations for pre- and de novo synthesized enzymes was developed to improve predictions of nitrous oxide (N2O) accumulations in soil and emissions from the surface. The metabolic model of denitrification is based on dual-substrate utilization and Monod growth kinetics. Enzyme synthesis/activation was incorporated into each sequential reduction step of denitrification to regulate dynamics of the denitrifier population and the active enzyme pool, which controlled the rate function. Parameterizations were developed from observations of the dynamics of N2O production and reduction in soil incubation experiments. The model successfully reproduced the dynamics of N2O and N2 ac