Science.gov

Sample records for af brooks air

  1. Automation under suspicion--case flight AF-447 Air France.

    PubMed

    Martins, Edgard; Soares, Marcelo

    2012-01-01

    The probes allow the pilot to control the aircraft speed was essential to the balance of the flight. Opinions of experts who claim that "the design of the plane would have exercised a not inconsiderable role in the occurrence of a disaster." These messages revealed a series of important operating errors in a zone of turbulence, "making the plane uncontrollable, leading to a rapid depressurization device, according to these reports. A lawsuit in Toulouse and in Brazil aims to recognition of the liability of Air France and Airbus not insignificant role in the design and operation of the aircraft in the event of catastrophe. Opinions are taken from senior pilots that no commercial aviation training for certain situations abnormal flight that, if realized, could have influenced the pilots of the AF-447 to remove the plane's fatal dive show what experiments performed in simulators for military pilots, who are permanently subject to critical flight situations.

  2. Brooke-Spiegler syndrome.

    PubMed

    Szepietowski, J C; Wasik, F; Szybejko-Machaj, G; Bieniek, A; Schwartz, R A

    2001-07-01

    The Brooke-Spiegler syndrome is an autosomal dominant one characterized by cylindromas, trichoepitheliomas and occasionally spiradenomas. Within a given family, some members may have cylindromas whereas others may have trichoepitheliomas or both. We describe the coexistence of trichoepithelioma papulosum multiplex (also known as epithelioma adenoides cysticum of Brooke) and cylindromas in a 30-year-old man, and discuss the relationship between these two autosomal dominant syndromes.

  3. LYE BROOK WILDERNESS, VERMONT.

    USGS Publications Warehouse

    Ayuso, Robert A.; Harrison, D.K.

    1984-01-01

    The Lye Brook Wilderness, in the Green Mountains of Vermont is underlain by gneisses, quartzites, schists, and amphibolites of Precambrian to Ordovician age. A mineral-resource survey determined that only one commodity, quartzite, is present in large quantities and could be a source of dimension stone or crushed stone. Although an anomalously high radioactive area occurs within the Precambrian basement, geochemical studies indicate little promise for the occurrence of significant uranium mineralization or for the occurrence of other mineral or energy resources within the wilderness,

  4. Aerospace medicine at Brooks AFB, TX: hail and farewell.

    PubMed

    Nunneley, Sarah A; Webb, James T

    2011-05-01

    With the impending termination of USAF operations at Brooks Air Force Base (AFB) in San Antonio, TX, it is time to consider its historic role in Aerospace Medicine. The base was established in 1917 as a flight training center for the U.S. Army Air Service and in 1926 became home to its School of Aviation Medicine. The school moved to San Antonio's Randolph Field in 1931, but in 1959 it returned to Brooks where it occupied new facilities to support its role as a national center for U.S. Air Force aerospace medicine, including teaching, clinical medicine, and research. The mission was then expanded to encompass support of U.S. military and civilian space programs. With the abrupt termination of the military space program in 1969, research at Brooks focused on clinical aviation medicine and support of advanced military aircraft while continuing close cooperation with NASA in support of orbital spaceflight and the journey to the Moon. Reorganization in the 1990s assigned all research functions at Brooks to the Human Systems Division and its successors, leaving to USAFSAM the missions related to clinical work and teaching. In 2002 the USAF and the city of San Antonio implemented shared operation of Brooks as a "City-Base" in the hope of deflecting threatened closure. Nevertheless, under continuing pressure to consolidate military facilities in the United States, the 2005 Base Closure and Realignment Commission ordered Brooks closed by 2011, with its aerospace medicine functions relocated to new facilities at Wright-Patterson AFB in Dayton, OH.

  5. Sulfonamide toxicity in brook trout

    USGS Publications Warehouse

    Wood, E.M.; Yasutake, W.T.; Snieszko, S.F.

    1954-01-01

    Sterility was observed in female brook trout that were treated with sulfamerazine at frequent intervals for 2 years to control endemic furunculosis. Feeding sulfamerazine for a period of 8 months caused massive kidney damage similar to that observed in humans who develop allergies to “sulfa” drugs. Kidney damage of the type observed would probably cause renal insufficiency which would handicap any physiological function including reproduction. Feeding sulfonamides for periods up to 13 weeks did not produce kidney damage.

  6. E APPROACH, FACING W SHOWING PARAPET CURTAILS Stanley Brook ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    E APPROACH, FACING W SHOWING PARAPET CURTAILS - Stanley Brook Bridge, Spanning Stanley Brook, Stanley Brook Motor Road, & Seaside Trail on Barr Hill-Day Mountain Carriage Road, Seal Harbor, Hancock County, ME

  7. Extending simulation-based acquisition (SBA) to the warfighter with the Air Force Joint Synthetic Battlespace (JSB-AF)

    NASA Astrophysics Data System (ADS)

    Faye, Phil; Andrew, Emily B.; Lee, Jayson

    2001-09-01

    The Air Force has vectored in a new direction to expand its investment in advanced simulation technologies to improve our readiness, lower costs, and dominate the battles of tomorrow. One of the critical initiatives in this direction is the Joint Synthetic Battlespace (JSB). The JSB will provide an integrated Modeling and Simulation (M&S) environment that brings together analysis, training, and simulations into a coherent whole. The ultimate goal is to develop a JSB simulation capability that will provide a new level of realism in synthetic mission and battlespace environments. This capability will be used to evaluate not only specific systems characteristics but also the associated tactics and procedures. The feature that distinguishes the JSB will be the its ability to realistically represent the real-world mission environment and provide the warfighter with real-time feedback on a system's expected performance. This unprecedented level of realism and response will enable the warfighter to evaluate mission effectiveness and conduct course of action analyses. At the same time, the JSB will increase the acquisition community's ability to build or modify systems to meet users' needs and expectations by making the warfighter the focus and direct participant in the acquisition process. As a detailed engineering and trades tool, the JSB will provide a completely scaleable environment for controlled executions of experiments to support analyses that require repeatability and controlled variations in the simulated environment. The government will also be able to ensure the configuration, control, and consistency of the JSB environment, while the users will develop their own plans and scenarios for their analyses. This will provide a standardized synthetic environment for acquisition programs that can be used as either a distributed or stand-alone application.

  8. Brookings Papers on Education Policy, 2005

    ERIC Educational Resources Information Center

    Ravitch, Diane, Ed.

    2005-01-01

    American education has always had its critics, and undoubtedly always will. Nonetheless, there are signs that the educational environment is improving in unexpected ways. This issue of the Brookings Papers on Education Policy, the eighth volume springing from a series of annual meetings sponsored by the Brookings Institution to examine specific…

  9. Harriet Brooks-Pioneer nuclear scientist

    NASA Astrophysics Data System (ADS)

    Rayner-Canham, M. F.; Rayner-Canham, G. W.

    1989-10-01

    This article, using revealing statements from contemporary correspondence, traces the eventful life of Harriet Brooks, one of Ernest Rutherford's most valued research students and collaborators at McGill University. Brooks performed some of the crucial experiments in the early work on radioactivity; her work led her to the Cavendish where she did work with J. J. Thomson. Still later, she worked with Marie Curie, to whom Rutherford favorably compared her. Despite Brooks' achievements and promise, she finally relinquished her research career when faced with insurmountable objections to women who wished to have both a professional and a married life.

  10. Genetics Home Reference: Brooke-Spiegler syndrome

    MedlinePlus

    ... skin appendages), such as sweat glands and hair follicles. People with Brooke-Spiegler syndrome may develop several ... develop in sweat glands. Trichoepitheliomas arise from hair follicles. The origin of cylindromas has been unclear; while ...

  11. AmeriFlux US-Bkg Brookings

    SciTech Connect

    Meyers, Tilden

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Bkg Brookings. Site Description - The Brookings site is located in a private pasture, consisting of a mixture of C3 and C4 species actively used for grazing. Belonging to the Northern Great Plains Rangelands, the grassland is representative of many in the north central United States, with seasonal winter conditions and a wet growing season.

  12. Harriet Brooks: Canada's First Woman Physicist

    NASA Astrophysics Data System (ADS)

    Rayner-Canham, Geoffrey

    2004-03-01

    During those early halcyon days of the study of radioactivity, one young Canadian woman, Harriet Brooks, joined Ernest Rutherford's group as his first research student. Later, she joined J.J. Thomson's group in Cambridge and, finally, Marie Curie's group in Paris. During her short research career, she made several important contributions to science. She investigated the nature of 'emanation' from radium; discovered that radioactive substances could undergo successive decay; and first reported the recoil of the radioactive atom. Much of this research was published under her name alone though Rutherford made extensive reference to her discoveries in his Bakerian lecture of 1904. Brooks life is of interest not only in what she accomplished, but also in the challenges she faced as a pioneering woman scientist in the early part of the twentieth century. In the presentation we will blend the account of her life and work with the societal context. This work was accomplished jointly with Marelene F. Rayner-Canham.

  13. Air

    MedlinePlus

    ... do to protect yourself from dirty air . Indoor air pollution and outdoor air pollution Air can be polluted indoors and it can ... this chart to see what things cause indoor air pollution and what things cause outdoor air pollution! Indoor ...

  14. 33 CFR 117.202 - Cold Spring Brook.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Cold Spring Brook. 117.202 Section 117.202 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Connecticut § 117.202 Cold Spring Brook. The draw...

  15. 33 CFR 117.202 - Cold Spring Brook.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Cold Spring Brook. 117.202 Section 117.202 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Connecticut § 117.202 Cold Spring Brook. The draw...

  16. 33 CFR 117.202 - Cold Spring Brook.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Cold Spring Brook. 117.202 Section 117.202 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Connecticut § 117.202 Cold Spring Brook. The draw...

  17. 33 CFR 117.202 - Cold Spring Brook.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Cold Spring Brook. 117.202 Section 117.202 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Connecticut § 117.202 Cold Spring Brook. The draw...

  18. 33 CFR 117.202 - Cold Spring Brook.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Cold Spring Brook. 117.202 Section 117.202 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Connecticut § 117.202 Cold Spring Brook. The draw...

  19. Cretaceous Olistostrome Model, Brooks Range, Alaska

    SciTech Connect

    Crane, R.C.

    1985-04-01

    The foothills area of the Brooks Range thrust belt in the area between the Itkillik River and the Etivluk River is composed dominantly of shallow, thrusted olistostrome sheets. Three olistostrome units can be recognized based on the dominant lithology of contained olistoliths and age of the matrix shales. The lower unit is Thithonian to mid-Valanginian in age and is characterized by abundant graywacke and turbidite, mafic rocks, black cherts, olistoliths of Norian-Rhaetic shales, Nuka sands, and glide sheets of Upper Devonian to Lower Mississippian rocks. Olistolights were derived from the Misheguk, Ipnavik, and Nuka Ridge allochthonous sequences. The middle unit is of late Valanginian age and has olistoliths of Norian shales; more abundant Upper Triassic chert; Otuk Formation; variegated, radiolarian, black and white cherts; Siksikpuk facies red, green and black shales; Upper Jurassic graywacke; and minor occurrences of mafic rocks. The unit is characterized by glide sheets of Triassic white and multicolor cherts. Olistoliths are derived from Nuka Ridge and Brooks Range sequences. The upper unit is Hauterivian in age and olistoliths included reworked material from all older units. Olistoliths are few and widely scattered. Isolated outcrops of white chert and conglomerate boulders are characteristic.

  20. Brook trout passage performance through culverts

    USGS Publications Warehouse

    Goerig, Elsa; Castro-Santos, Theodore R.; Bergeron, Normand

    2016-01-01

    Culverts can restrict access to habitat for stream-dwelling fishes. We used passive integrated transponder telemetry to quantify passage performance of >1000 wild brook trout (Salvelinus fontinalis) attempting to pass 13 culverts in Quebec under a range of hydraulic and environmental conditions. Several variables influenced passage success, including complex interactions between physiology and behavior, hydraulics, and structural characteristics. The probability of successful passage was greater through corrugated metal culverts than through smooth ones, particularly among smaller fish. Trout were also more likely to pass at warmer temperatures, but this effect diminished above 15 °C. Passage was impeded at higher flows, through culverts with steep slopes, and those with deep downstream pools. This study provides insight on factors influencing brook trout capacity to pass culverts as well as a model to estimate passage success under various conditions, with an improved resolution and accuracy over existing approaches. It also presents methods that could be used to investigate passage success of other species, with implications for connectivity of the riverscape.

  1. NASA's Plum Brook Station Water Systems

    NASA Technical Reports Server (NTRS)

    Puzak, Robert M.; Kimpton, Arthur

    2006-01-01

    Plum Brook Station's water systems were built in the 1940s to support a World War II ordnance production complex. Because the systems had not been analyzed for current NASA usage, it was unknown if they could meet current requirements and codes or if they were efficient for current use. NASA wanted to determine what improvements would be needed or advisable to support its research projects, so it contracted a hydraulic analysis of the raw and domestic water systems. Burgess and Niple determined current water demands and water flow, developed and calibrated models of the two water systems, and evaluated efficiency improvements and cost-cutting options. They recommended replacing some water mains, installing a new service connection, and removing some high-maintenance items (an underground reservoir, some booster pumps, and a tower).

  2. Just Add Water and Stir. Graduate Chemistry Laboratory, Stony Brook

    ERIC Educational Resources Information Center

    Yee, Roger

    1974-01-01

    Using traditional building materials and a fast-track recipe, the architects, acting as construction manager, completed the Graduate Chemistry Laboratory at Stony Brook, New York, two full years ahead of schedule. (Author/MF)

  3. 36 CFR 13.1226 - Brooks Falls area.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Developed Area § 13.1226 Brooks Falls area. The area within 50 yards of the ordinary high water marks of the... entry from June 15 through August 15, unless authorized by the Superintendent. The Superintendent...

  4. 36 CFR 13.1226 - Brooks Falls area.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Developed Area § 13.1226 Brooks Falls area. The area within 50 yards of the ordinary high water marks of the... entry from June 15 through August 15, unless authorized by the Superintendent. The Superintendent...

  5. 36 CFR 13.1226 - Brooks Falls area.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... Developed Area § 13.1226 Brooks Falls area. The area within 50 yards of the ordinary high water marks of the... entry from June 15 through August 15, unless authorized by the Superintendent. The Superintendent...

  6. 36 CFR 13.1226 - Brooks Falls area.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... Developed Area § 13.1226 Brooks Falls area. The area within 50 yards of the ordinary high water marks of the... entry from June 15 through August 15, unless authorized by the Superintendent. The Superintendent...

  7. 1. INTAKE CHANNEL LOOKING NORTHEAST; WATER FROM BEAVER BROOK ENTERS ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. INTAKE CHANNEL LOOKING NORTHEAST; WATER FROM BEAVER BROOK ENTERS THE INTAKE CHANNEL HERE. - Hondius Water Line, 1.6 miles Northwest of Park headquarters building & 1 mile Northwest of Beaver Meadows entrance station, Estes Park, Larimer County, CO

  8. Hydraulic modeling of stream channels and structures in Harbor and Crow Hollow Brooks, Meriden, Connecticut

    USGS Publications Warehouse

    Weiss, Lawrence A.; Sears, Michael P.; Cervione, Michael A.

    1994-01-01

    Effects of urbanization have increased the frequency and size of floods along certain reaches of Harbor Brook and Crow Hollow Brook in Meriden, Conn. A floodprofile-modeling study was conducted to model the effects of selected channel and structural modifications on flood elevations and inundated areas. The study covered the reach of Harbor Brook downstream from Interstate 691 and the reach of Crow Hollow Brook downstream from Johnson Avenue. Proposed modifications, which include changes to bank heights, channel geometry, structural geometry, and streambed armoring on Harbor Brook and changes to bank heights on Crow Hollow Brook, significantly lower flood elevations. Results of the modeling indicate a significant reduction of flood elevations for the 10-year, 25-year, 35-year, 50-year, and 100-year flood frequencies using proposed modifications to (1 ) bank heights between Harbor Brook Towers and Interstate 691 on Harbor Brook, and between Centennial Avenue and Johnson Avenue on Crow Hollow Brook; (2) channel geometry between Coe Avenue and Interstate 69 1 on Harbor Brook; (3) bridge and culvert opening geometry between Harbor Brook Towers and Interstate 691 on Harbor Brook; and (4) channel streambed armoring between Harbor Brook Towers and Interstate 691 on Harbor Brook. The proposed modifications were developed without consideration of cost-benefit ratios.

  9. The Laser Teaching Center at Stony Brook

    NASA Astrophysics Data System (ADS)

    Metcalf, Harold

    2010-03-01

    Stony Brook's Laser Teaching Center was built more than ten years ago to serve a clientele ranging from high school (HS) students to graduate students. Its construction in a formerly open hallway area was financed by donations from private corporations and foundations, and it was equipped with similar contributions. It provides a working area for laser and optics-related projects, both individual and group. Its daily operations are overseen by a highly-dedicated Ph.D. who is a department employee. It is populated by HS students doing science fair related research, including the major national contests (in which we have many finalists and semifinalists), undergraduates doing extra-credit course projects and other kinds of research activities, graduate students in a special course called ``Optics Rotation,'' and many others who come to use its facilities. All of its denizens benefit enormously by occasional prestigious visitors. Students are drawn from among our undergraduates and graduate students, NSF's WISE program, special HS summer programs, and direct application from the outside. We have an excellent record of placing our HS students in the highest ranking colleges.

  10. Thrust involvement of metamorphic rocks, southwestern Brooks Range, Alaska

    SciTech Connect

    Till, A.B.; Schmidt, J.M.; Nelson, S.W. )

    1988-10-01

    Most models for the tectonic history of the western Brooks Range treat Proterozoic and lower Paleozoic metamorphic rocks exposed in the southern part of the range as passive structural basement vertically uplifted late in the Mesozoic orogenic episode. Mapping in the metamorphic rocks shows that they can de divided into two structurally and metamorphically distinct belts, both of which were folded and thrust during the orogeny. Recognition of these belts and the nature of the contact separating them is critical to construction of accurate tectonic models of the Brooks Range fold and thrust belt.

  11. Endoparasites of plethodontid salamanders from Paradise Brook, New Hampshire.

    PubMed

    Muzzall, P M; Peebles, C R; Burton, T M

    1997-12-01

    Totals of 52 dusky salamanders Desmognathus fuscus, 51 two-lined salamanders Eurycea bislineata, 54 red-backed salamanders Plethodon cinereus, and 3 spring salamanders Gyrinophilus porphyriticus (Plethodontidae) collected in June and August 1995 from Paradise Brook, a tributary to Hubbard Brook, New Hampshire, were examined for parasites. Parasites found were Brachycoelium storeriae, Brachycoelium sp., Bothriocephalus rarus, Falcaustra sp., Omeia sp., Batracholandros magnavulvaris, and Cepedietta michiganensis. Eighty-six percent of the red-backed salamanders, a terrestrial species, harbored 1 or more parasites. Among the aquatic and semiaquatic species, 27% of the dusky and 45% of the two-lined salamanders were infected with 1 or more parasites.

  12. The Bear Brook Watershed, Maine (BBWM), USA

    USGS Publications Warehouse

    Norton, S.; Kahl, J.; Fernandez, I.; Haines, T.; Rustad, L.; Nodvin, S.; Scofield, J.; Strickland, T.; Erickson, H.; Wigington, P.; Lee, J.

    1999-01-01

    The Bear Brook Watershed Manipulation project in Maine is a paired calibrated watershed study funded by the U.S. EPA. The research program is evaluating whole ecosystem response to elevated inputs of acidifying chemicals. The consists of a 2.5 year calibration period (1987-1989), nine years of chemical additions of (NH4)2SO4 (15N- and 34S-enriched for several years) to West Bear watershed (1989-1998), followed by a recovery period. The other watershed, East Bear, serves as a reference. Dosing is in six equal treatments/yr of 1800 eq SO4 and NH4/ha/yr, a 200% increase over 1988 loading (wet plus dry) for SO4 300% for N (wet NO3 + NH4). The experimental and reference watersheds are forested with mixed hard- and softwoods, and have thin acidic soils, areas of 10.2 and 10.7 ha and relief of 210 m. Thin till of variable composition is underlain by metasedimentary pelitic rocks and calc-silicate gneiss intruded by granite dikes and sills. For the period 1987-1995, precipitation averaged 1.4 m/yr, had a mean pH of 4.5, with SO4, NO3, and NH4 concentrations of 26, 14, and 7 ??eq/L, respectively. The nearly perrenial streams draining each watershed have discharges ranging from 0 (East Bear stops flowing for one to two months per year) to 150 L/sec. Prior to manipulation, East Bear and West Bear had a volume weighted annual mean pH of approximately 5.4, alkalinity = 0 to 4 ??eq/L, total base cations = 184 ??eq/L (sea-salt corrected = 118 ??eq/L), and SO4 = 100 to 111 ??eq/L. Nitrate ranged from 0 to 30 ??eq/L with an annual mean of 6 to 25 ??eq/L; dissolved organic carbon (DOC) ranged from 1 to 7 mg/L but was typically less than 3. Episodic acidification occurred at high discharge and was caused by dilution of cations, slightly increased DOC, significantly higher NO3, and the sea-salt effect. Depressions in pH were accompanied by increases in inorganic Al. The West Bear catchment responded to the chemical additions with increased export of base cations, Al, SO4, NO3, and

  13. Clarification to Brook and Willoughby (2016).

    PubMed

    2016-07-01

    Reports an error in "Social anxiety and alcohol use across the university years: Adaptive and maladaptive groups" by Christina A. Brook and Teena Willoughby (Developmental Psychology, 2016[May], Vol 52[5], 835-845). In the article, Figures 1 and 2 and Tables 1, 2, 3, and 4 were inadvertently designated as supplemental material. The figures and tables are present in the erratum. (The following abstract of the original article appeared in record 2016-13161-001.) University/college can be a challenging time as students face developmental tasks such as building new social networks and achieving academically. Social anxiety may be disadvantageous in this setting given that social situations often include drinking and individuals with social anxiety tend to self-medicate through alcohol use. However, findings are mixed as to whether the association between social anxiety and alcohol use is positive or negative. To clarify the nature of this association, we used a person-centered longitudinal analysis to identify student groups based on levels of social anxiety symptoms and alcohol consumption. Undergraduates (N = 1132, 70.5% female, Mage = 19.06 at Time 1) enrolled in university completed a survey assessing social anxiety and alcohol use over 3 years, and psychosocial functioning and emotion coping behaviors at Time 1. Two out of 5 groups were identified with higher levels of social anxiety, 1 with moderately low alcohol use, and the other with moderately high alcohol use. Both groups reported higher levels of general anxiety, depressive symptoms, behavioral inhibition, emotional reactivity, daily hassles, and lower levels of social ties at Time 1 than the 3 groups with lower levels of social anxiety. Furthermore, the social anxiety-alcohol use group reported significantly lower academic grades and was more likely to endorse problematic emotion coping behaviors (e.g., self-injury) than the social anxiety-low alcohol use group. These results not only help explain the

  14. Seasonal temperature and precipitation regulate brook trout young-of-the-year abundance and population dynamics

    USGS Publications Warehouse

    Kanno, Yoichiro; Pregler, Kasey C.; Hitt, Nathaniel P.; Letcher, Benjamin H.; Hocking, Daniel; Wofford, John E.B.

    2015-01-01

    Our results indicate that YOY abundance is a key driver of brook trout population dynamics that is mediated by seasonal weather patterns. A reliable assessment of climate change impacts on brook trout needs to account for how alternations in seasonal weather patterns impact YOY abundance and how such relationships may differ across the range of brook trout distribution.

  15. The AFS Impact Study: Final Report. AFS Research Report 33.

    ERIC Educational Resources Information Center

    Hansel, Bettina

    The AFS Impact Study, initiated in 1977, is an attempt to document changes in learning and personal development associated with an intercultural "homestay" program. Completed in 1985, the study identifies several areas in which students show greater learning and educational growth than that shown by a group of students who had expressed interest…

  16. Brookings-Wharton Papers on Urban Affairs: 2006

    ERIC Educational Resources Information Center

    Burtless, Gary, Ed.; Pack, Janet Rothenberg, Ed.

    2006-01-01

    Designed to reach a wide audience of scholars and policymakers, the "Brookings-Wharton Papers on Urban Affairs" is an annual series that serves as a forum for cutting-edge, accessible research on urban policy. The editors seek to integrate broader research into the policy discussion by bringing urban studies scholars together with economists and…

  17. Induction and viability of tetraploids in brook trout (Salvelinus fontinalis)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Brook trout (Salvelinus fontinalis) populations are threatened by introduction of invasive species, habitat loss, and habitat degradation in their native range; and are a problem invasive species in western Unites States and Canada, and in Europe. Stocking sterile triploids has been promoted as an ...

  18. Preservation at Stony Brook. Preservation Planning Program. Study Report.

    ERIC Educational Resources Information Center

    Cook, Donald C.; And Others

    This final report is a product of a Preservation Planning Program (PPP) self-study conducted by the State University of New York (SUNY), Stony Brook, working with the Association of Research Libraries' (ARL) Office of Management Studies (OMS). The PPP is designed to put self-help tools into the hands of library staff responsible for developing…

  19. Documentary Linguistics and Computational Linguistics: A Response to Brooks

    ERIC Educational Resources Information Center

    Bird, Steven; Chiang, David; Frowein, Friedel; Hanke, Florian; Vaswani, Ashish

    2015-01-01

    In mid-2012, the authors organized a two-week workshop in Papua New Guinea to provide training in basic techniques and technologies for language documentation, and to gain understanding of how these technologies might be improved in the future. An assessment of the workshop was conducted by Brooks with the central idea that the workshop's…

  20. Evaluation of an Unsuccessful Brook Trout Electrofishing Removal Project in a Small Rocky Mountain Stream.

    SciTech Connect

    Meyer, Kevin A.; Lamansky, Jr., James A.; Schill, Daniel J.

    2006-01-26

    In the western United States, exotic brook trout Salvelinus fontinalis frequently have a deleterious effect on native salmonids, and biologists often attempt to remove brook trout from streams by means of electrofishing. Although the success of such projects typically is low, few studies have assessed the underlying mechanisms of failure, especially in terms of compensatory responses. A multiagency watershed advisory group (WAG) conducted a 3-year removal project to reduce brook trout and enhance native salmonids in 7.8 km of a southwestern Idaho stream. We evaluated the costs and success of their project in suppressing brook trout and looked for brook trout compensatory responses, such as decreased natural mortality, increased growth, increased fecundity at length, and earlier maturation. The total number of brook trout removed was 1,401 in 1998, 1,241 in 1999, and 890 in 2000; removal constituted an estimated 88% of the total number of brook trout in the stream in 1999 and 79% in 2000. Although abundance of age-1 and older brook trout declined slightly during and after the removals, abundance of age-0 brook trout increased 789% in the entire stream 2 years after the removals ceased. Total annual survival rate for age-2 and older brook trout did not decrease during the removals, and the removals failed to produce an increase in the abundance of native redband trout Oncorhynchus mykiss gairdneri. Lack of a meaningful decline and unchanged total mortality for older brook trout during the removals suggest that a compensatory response occurred in the brook trout population via reduced natural mortality, which offset the removal of large numbers of brook trout. Although we applaud WAG personnel for their goal of enhancing native salmonids by suppressing brook trout via electrofishing removal, we conclude that their efforts were unsuccessful and suggest that similar future projects elsewhere over such large stream lengths would be costly, quixotic enterprises.

  1. Survival of brook trout embryos in three episodically acidified streams

    SciTech Connect

    Fiss, F.C. ); Carline, R.F. )

    1993-03-01

    We evaluated, for brook trout Salvelinus fontinalis in three streams that undergo episodic acidification during critical periods of embryo development, survival of embryos from egg disposition to preemergence in natural redds and survival of sac fry in toxicity tests done in situ. Twenty-five natural redds were used for comparisons among streams. Median survival to preemergence (range, 16-68%) was different (P [le] 0.05) among streams and was inversely related to stream concentration of inorganic monomeric Al. Survival to preemergence was not related to intragravel dissolved oxygen concentration, gravel quality, or depth or velocity of stream water at redd sites. Median survival of sac fry exposed to stream water for 39 d was different among streams (range, 51-95%) and was inversely related to stream concentration of inorganic monomeric Al. Episodic acidification could lead to declines in populations of brook trout by causing decreased survival of early life stages. 37 refs., 2 figs., 7 tabs.

  2. A geologic framework for mineralization in the western Brooks Range

    USGS Publications Warehouse

    Young, Lorne E.

    2004-01-01

    The Brooks Range is a 950-km-long north-vergent fold and thrust belt, which was formed during Mesozoic convergence of the continental Arctic Alaska terrane and the oceanic Angayucham terrane and was further shortened and uplifted in Tertiary time. The Arctic Alaska terrane consists of parautochthonous rocks and the Endicott Mountains and De Long Mountains subterranes. The Endicott Mountains allochthon of the western Brooks Range is the setting for many sulfide and barite occurrences, such as the supergiant Red Dog zinc-lead mine. Mineralization is sediment hosted and most commonly is present in black shale and carbonate turbidites of the Mississippian Kuna Formation. The reconstructed Kuna basin is a 200 by +600 km feature that represents the culmination of a remarkable chain of events that includes three fluvial-deltaic and two or more orogenic cycles, Middle Devonian to Mississippian episodes of extension and igneous activity, and the emergence of a seaward Lower Proterozoic landmass that may have constituted a barrier to marine circulation. Mississippian extension and related horst-and-graben architecture in the western Brooks Range is manifested in part by strong facies variability between coeval units of allochthons and structural plates. Shallow marine to possibly nonmarine arkose, platform to shelf carbonate, slope-to-basin shale, chert and carbonate turbidites, and submarine volcanic rocks are all represented in Mississippian time. The structural setting of Mississippian sedimentation, volcanism, and mineralization in the Kuna basin may be comparable to documented Devono-Mississippian extensional sags or half-grabens in the subsurface north of the Brooks Range. Climate, terrestrial ecosystems, multiple fluvial-deltaic aquifers, and structural architecture affected the liberation, movement, and redeposition of metals in ways that are incompletely understood.

  3. Broad-scale patterns of Brook Trout responses to introduced Brown Trout in New York

    USGS Publications Warehouse

    McKenna, James E.; Slattery, Michael T.; Kean M. Clifford,

    2013-01-01

    Brook Trout Salvelinus fontinalis and Brown Trout Salmo trutta are valuable sport fish that coexist in many parts of the world due to stocking introductions. Causes for the decline of Brook Trout within their native range are not clear but include competition with Brown Trout, habitat alteration, and repetitive stocking practices. New York State contains a large portion of the Brook Trout's native range, where both species are maintained by stocking and other management actions. We used artificial neural network models, regression, principal components analysis, and simulation to evaluate the effects of Brown Trout, environmental conditions, and stocking on the distribution of Brook Trout in the center of their native range. We found evidence for the decline of Brook Trout in the presence of Brown Trout across many watersheds; 22% of sampled reaches where both species were expected to occur contained only Brown Trout. However, a model of the direct relationship between Brook Trout and Brown Trout abundance explained less than 1% of data variation. Ordination showed extensive overlap of Brook Trout and Brown Trout habitat conditions, with only small components of the hypervolume (multidimensional space) being distinctive. Subsequent analysis indicated higher abundances of Brook Trout in highly forested areas, while Brown Trout were more abundant in areas with relatively high proportions of agriculture. Simulation results indicated that direct interactions and habitat conditions were relatively minor factors compared with the effects of repeated stocking of Brown Trout into Brook Trout habitat. Intensive annual stocking of Brown Trout could eliminate resident Brook Trout in less than a decade. Ecological differences, harvest behavior, and other habitat changes can exacerbate Brook Trout losses. Custom stocking scenarios with Brown Trout introductions at relatively low proportions of resident Brook Trout populations may be able to sustain healthy populations of both

  4. AmeriFlux US-Br3 Brooks Field Site 11- Ames

    SciTech Connect

    Parkin, Tim; Prueger, John

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Br3 Brooks Field Site 11- Ames. Site Description - The Brooks Field Site 11 - Ames Site is one of three sites (Brooks Field Site 10 and Brooks Field Site 1011) located in a corn/soybean agricultural landscape of central Iowa. The farming systems, associated tillage, and nutrient management practices for soybean/corn production are typical of those throughout Upper Midwest Corn Belt. All three sites are members of the AmeriFlux network. Information for all three can be found in synchronous pages of this website.

  5. AmeriFlux US-Br1 Brooks Field Site 10- Ames

    SciTech Connect

    Parkin, Tim; Prueger, John

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Br1 Brooks Field Site 10- Ames. Site Description - The Brooks Field Site 10 - Ames Site is one of three sites (Brooks Field Site 11 and Brooks Field Site 1011) located in a corn/soybean agricultural landscape of central Iowa. The farming systems, associated tillage, and nutrient management practices for soybean/corn production are typical of those throughout Upper Midwest Corn Belt. All three sites are members of the AmeriFlux network. Information for all three can be found in synchronous pages of this website.

  6. Hydrologic conditions in the Jacobs Creek, Stony Brook, and Beden Brook drainage basins, west-central New Jersey, 1986-88

    USGS Publications Warehouse

    Jacobsen, Eric; Hardy, M.A.; Kurtz, B.A.

    1993-01-01

    Data on the quantity and quality of groundwater and surface water in the drainage basins of Jacobs Creek, Stony Brook, and Beden Brook upstream from U.S. Route 206 in west-central New Jersey were collected from October 1, 1986, through September 30, 1988. Water levels measured in 74 wells ranged from 49 to 453 ft above sea level. The water-table surface generally mimicked topography; however, the water-level altitude in one well indicates the possibility of local interbasin groundwater flow. Calcium and bicarbonate were the most abundant cation and anion in most of the 25 groundwater samples. With one exception, concentrations of nutrients, trace elements, organic carbon, and volatile organic compounds in groundwater samples were less than U.S. Environmental Protection Agency primary drinking-water regulations. Stream low-flow measurements made twice at each of 63 sites indicate that both discharge and runoff increased downstream for most reaches of Jacobs Creek, Stony Brook, and Beden Brook. For main-stem sites, the highest base-flow runoff occurred at site 01462733 on Jacobs Creek; the greatest discharge was measured at site 01401100 on Stony Brook. The flow-duration curve for Stony Brook for 1987-88 indicates a wetter- than-normal period for the area. Results of surface-water-quality analyses indicate that calcium and sodium plus potassium were the dominant or codominant cations, and bicarbonate and chloride were the dominant or codominant anions in most samples. Concentrations of nutrients typically exceeded those needed to support surplus algal growth. Concentrations of trace elements generally were less than U.S. Environmental Protection Agency primary drinking-water regulations. Bottom-sediment samples contained several persistent organic compounds. Significant downstream variations were found in concentrations of copper and lead in Jacobs Creek and Stony Brook. Results of macroinvertebrate community sampling indicate an input of nutrients to several stream

  7. Spatial and temporal movement dynamics of brook Salvelinus fontinalis and brown trout Salmo trutta

    USGS Publications Warehouse

    Davis, L.A.; Wagner, Tyler; Barton, Meredith L.

    2015-01-01

    Native eastern brook trout Salvelinus fontinalis and naturalized brown trout Salmo trutta occur sympatrically in many streams across the brook trout’s native range in the eastern United States. Understanding within- among-species variability in movement, including correlates of movement, has implications for management and conservation. We radio tracked 55 brook trout and 45 brown trout in five streams in a north-central Pennsylvania, USA watershed to quantify the movement of brook trout and brown trout during the fall and early winter to (1) evaluate the late-summer, early winter movement patterns of brook trout and brown trout, (2) determine correlates of movement and if movement patterns varied between brook trout and brown trout, and (3) evaluate genetic diversity of brook trout within and among study streams, and relate findings to telemetry-based observations of movement. Average total movement was greater for brown trout (mean ± SD = 2,924 ± 4,187 m) than for brook trout (mean ± SD = 1,769 ± 2,194 m). Although there was a large amount of among-fish variability in the movement of both species, the majority of movement coincided with the onset of the spawning season, and a threshold effect was detected between stream flow and movement: where movement increased abruptly for both species during positive flow events. Microsatellite analysis of brook trout revealed consistent findings to those found using radio-tracking, indicating a moderate to high degree of gene flow among brook trout populations. Seasonal movement patterns and the potential for relatively large movements of brook and brown trout highlight the importance of considering stream connectivity when restoring and protecting fish populations and their habitats.

  8. Water resources of Brookings and Kingsbury counties, South Dakota

    USGS Publications Warehouse

    Hamilton, L.J.

    1989-01-01

    Surface water and groundwater resources are widely distributed in Brookings and Kingsbury Counties, an area of nearly 1,700 sq mi of glaciated plains of the Coteau des Prairies plateau in eastern South Dakota. The resources are relatively undeveloped except for large withdrawals for irrigation from shallow glacial aquifers. Groundwater withdrawals accounted for 90% of the 16 ,000 acre-ft of water withdrawn in 1985. The Big Sioux River drains an area of about 2,400 sq mi and flows southward through Brookings County. Discharge of the Big Sioux River near Brookings has averaged 117,000 acre-ft/yr but can decrease to 17 ,600 acre-ft/yr during drought periods. West of the river are thousands of shallow ponds, marshes, and lakes. The largest, Lake Thompson in central Kingsbury County, rose nearly 20 ft during 1985-86 because of record precipitation and large overflow from upstream lakes. Six major glacial aquifers of outwash sand and gravel store 8 million acre-ft of fresh to slightly saline, very hard water beneath nearly 1,300 sq mi at depths ranging from land surface to more than 700 ft. Concentrations of dissolved solids and hardness of water from the aquifers exceed 1,000 mg/L at many places. The 600 sq mi of the surficial, freshwater Big Sioux and Vermillion East Fork aquifers contain more than 200 large-capacity wells that can be pumped from 200 to as much as 1,300 gal/min. Three extensive bedrock aquifers store 67 million acre-ft of slightly saline, soft water at depths ranging from 320 to 1,300 ft. Maximum yields for wells in the sandstone of the Codell and Dakota aquifers are estimated to be 100 gal/min. (USGS)

  9. Proposed standard-weight equations for brook trout

    USGS Publications Warehouse

    Hyatt, M.W.; Hubert, W.A.

    2001-01-01

    Weight and length data were obtained for 113 populations of brook trout Salvelinus fontinalis across the species' geographic range in North America to estimate a standard-weight (Ws) equation for this species. Estimation was done by applying the regression-line-percentile technique to fish of 120-620 mm total length (TL). The proposed metric-unit (g and mm) equation is log10Ws = -5.186 + 3.103 log10TL; the English-unit (lb and in) equivalent is log10Ws = -3.483 + 3.103 log10TL. No systematic length bias was evident in the relative-weight values calculated from these equations.

  10. Histopathology of fish. IV. A granuloma of brook trout

    USGS Publications Warehouse

    Wood, E.M.; Yasutake, W.T.

    1956-01-01

    In the summer of 1952, Snieszko and Griffin (1955) diagnosed kidney disease in brook trout from the Fish and Wildlife Service's station at Berlin, New Hampshire. During the examination of these fish, a peculiar lesion was observed in the vicinity of the gastric caeca. In very advanced cases, hard, glistening, white masses of tissue bearing a striking resemblance to mature testes often filled the abdominal cavity. In the initial examinations, the material was actually mistaken for normal testicular tissue. Subsequently, it was recognized as an entirely aberrant, proliferating tumor-like mass.

  11. 75 FR 426 - Notice of Application for Disclaimer of Interest, Brookings County, SD

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-05

    ... Bureau of Land Management Notice of Application for Disclaimer of Interest, Brookings County, SD AGENCY... Recordable Disclaimer of Interest from the United States for an easement in Brookings County, South Dakota... Recordable Disclaimer of Interest, if issued, will confirm that the United States has no valid interest...

  12. The Why, What, and Impact of GPA at Oxford Brookes University

    ERIC Educational Resources Information Center

    Andrews, Matthew

    2016-01-01

    This paper examines the introduction at Oxford Brookes University of a Grade Point Average (GPA) scheme alongside the traditional honours degree classification. It considers the reasons for the introduction of GPA, the way in which the scheme was implemented, and offers an insight into the impact of GPA at Brookes. Finally, the paper considers…

  13. Sustaining a Rural Black Farming Community in the South: A Portrait of Brooks Farm, Mississippi.

    ERIC Educational Resources Information Center

    Grim, Valerie; Effland, Anne B. W.

    1997-01-01

    Brooks Farm is an independent Black farming community unique in the Mississippi Delta. A community case study shows that, despite declining population and resources, Brooks Farm has drawn on the strength of its traditional institutions (family, churches, civic groups) to sustain community life and to continue to provide services to the elderly,…

  14. A new tool for coding and interpreting injuries in fatal airplane crashes: the crash injury pattern assessment tool application to the Air France Flight AF447 disaster (Rio de Janeiro-Paris), 1st of June 2009.

    PubMed

    Schuliar, Yves; Chapenoire, Stéphane; Miras, Alain; Contrand, Benjamin; Lagarde, Emmanuel

    2014-09-01

    For investigation of air disasters, crash reconstruction is obtained using data from flight recorders, physical evidence from the site, and injuries patterns of the victims. This article describes a new software, Crash Injury Pattern Assessment Tool (CIPAT), to code and analyze injuries. The coding system was derived from the Abbreviated Injury Score (AIS). Scores were created corresponding to the amount of energy required causing the trauma (ER), and the software was developed to compute summary variables related to the position (assigned seat) of victims. A dataset was built from the postmortem examination of 154/228 victims of the Air France disaster (June 2009), recovered from the Atlantic Ocean after a complex and difficult task at a depth of 12790 ft. The use of CIPAT allowed to precise cause and circumstances of deaths and confirmed major dynamics parameters of the crash event established by the French Civil Aviation Safety Investigation Authority.

  15. 27. "SITE PLAN." Specifications No. OC15775, Drawing No. AF600915, sheet ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    27. "SITE PLAN." Specifications No. OC1-57-75, Drawing No. AF-60-09-15, sheet 1 of 96, D.O. Series No. AF 1394/20, Rev. B. Stamped: RECORD DRAWING - AS CONSTRUCTED. Below stamp: Contract no. 5296 Rev. B, Date: 11/17/59. Site plan of 20,000-foot track, including construction phasing notes. - Edwards Air Force Base, South Base Sled Track, Edwards Air Force Base, North of Avenue B, between 100th & 140th Streets East, Lancaster, Los Angeles County, CA

  16. Eaton AF5000+Genesis Communication Driver

    1995-05-25

    Communication driver allows the Genesis Control Series software to interact with Eaton AF5000+ frequency drives via RS-232 communications. All Eaton AF5000+ parameters that support communications are supported by the Genesis driver. Multidrop addressing to multiple units is available with the Genesis communication driver.

  17. Geochemical evidence for a brooks range mineral belt, Alaska

    USGS Publications Warehouse

    Marsh, S.P.; Cathrall, J.B.

    1981-01-01

    Geochemical studies in the central Brooks Range, Alaska, delineate a regional, structurally controlled mineral belt in east-west-trending metamorphic rocks and adjacent metasedimentary rocks. The mineral belt extends eastward from the Ambler River quadrangle to the Chandalar and Philip Smith quadrangles, Alaska, from 147?? to 156??W. longitude, a distance of more than 375 km, and spans a width from 67?? to 69??N. latitude, a distance of more than 222 km. Within this belt are several occurrences of copper and molybdenum mineralization associated with meta-igneous, metasedimentary, and metavolcanic rocks; the geochemical study delineates target areas for additional occurrences. A total of 4677 stream-sediment and 2286 panned-concentrate samples were collected in the central Brooks Range, Alaska, from 1975 to 1979. The -80 mesh ( 2.86) nonmagnetic fraction of the panned concentrates from stream sediment were analyzed by semiquantitative spectrographic methods. Two geochemical suites were recognized in this investigation; a base-metal suite of copper-lead-zinc and a molybdenum suite of molybdenum-tin-tungsten. These suites suggest several types of mineralization within the metamorphic belt. Anomalies in molybdenum with associated Cu and W suggest a potential porphyry molybdenum system associated with meta-igneous rocks. This regional study indicates that areas of metaigneous rocks in the central metamorphic belt are target areas for potential mineralized porphyry systems and that areas of metavolcanic rocks are target areas for potential massive sulfide mineralization. ?? 1981.

  18. Heritability of Morphology in Brook Trout with Variable Life Histories

    PubMed Central

    Varian, Anna; Nichols, Krista M.

    2010-01-01

    Distinct morphological variation is often associated with variation in life histories within and among populations of both plants and animals. In this study, we examined the heritability of morphology in three hatchery strains of brook trout (Salvelinus fontinalis), which were historically or are currently used for stocking and supplementation of both migratory and resident ecotypes in the upper Great Lakes region. In a common garden experiment, significant variation in body morphology was observed within and across populations sampled at three time periods. The most notable differences among strains were differences in dorso-ventral body depth and the shape of the caudal peduncle, with some differences in the anterior-posterior placement of the dorsal and ventral fins. Variation with and among 70 half-sib families indicates that heritabilities of morphology and body size were significant at most developmental time points both within and across strains. Heritabilities for morphological characters within strains ranged from 0 to 0.95 across time points. Significant within-strain heritabilities for length ranged from 0 to 0.93 across time points and for weight ranged from 0 to 0.88. Significant additive genetic variation exists within and across hatchery brook trout strains for morphology and size, indicating that these traits are capable of responding to natural or artificial selection. PMID:20886080

  19. Lower Paleozoic and Proterozoic rocks of Southern Brooks Range, Alaska

    SciTech Connect

    Dillion, J.T.

    1985-04-01

    Lower Paleozoic or Proterozoic basement rocks occur in windows and thrust plates in several areas of the Brooks Range. Uranium-lead radiometric analyses of highly metamorphosed rocks from the Baird Mountains and Ernie Lake area have yielded Proterozoic ages. Structural, stratigraphic, petrologic, and isotopic evidence exists for Proterozoic(.) rocks in the schist belt; around the Chandalar, Arrigetch,and Igikpak plutons; and in the Cosmos Hills window. Fossiliferous, Lower Paleozoic, low-grade metasedimentary rocks occur in the Romanzof Mountains, Doonerak window, and Baird Mountains, and may also surround the Chandalar plutons. Locally, the Lower Paleozoic rocks are unconformably overlain by Devonian to Mississippian metasediments and may stratigraphically overlie older, higher grade metamorphic rocks. Similarities in the stratigraphic settings and lithologies and in fossil ages and affinities allow correlation of the Lower Paleozoic rocks in the southern Brooks Range. Correlation of Lower Paleozoic rocks exposed beneath the Endicott allochthon at the Doonerak fenster with coeval rocks in an overlying thrust plate to the south at Snowsden Mountain is especially significant. A west-trending thrust fault, which is rooted in Lower Paleozoic basement, along the north side of Snowsden Mountain is postulated to account for these relationships. Apparently, the Endicott allochthon roots beneath the Snowsden Mountain thrust fault. Evidence form conodont samples currently being studied by A. Harris may bear on the extent of the Lower Paleozoic rocks in the upper plate of the Snowsden Mountain thrust and in the Chandalar area.

  20. Rooted Brooks Range ophiolite: Implications for Cordilleran terranes

    USGS Publications Warehouse

    Saltus, R.W.; Morin, R.L.; Hudson, T.L.

    2001-01-01

    Modeling of gravity and magnetic data shows that areally extensive mafic and ultramafic rocks of the western Brooks Range, Alaska, are at least 8 km thick, and that gabbro and ultramafic rocks underlie basalt in several places. The basalt, gabbro, and ultramafic rocks have been considered parts of a far-traveled ophiolite assemblage. These rocks are the highest structural elements in the Brooks Range thrust belt and are thought to be hundreds of kilometers north of their origin. This requires these rocks to be thin klippen without geologic ties to the continental shelf sedimentary rocks that now surround them. The geophysically determined, thick and interleaved subsurface character of the basalt, gabbro, and ultramafic rocks is inconsistent with this interpretation. An origin within an extensional setting on the continental shelf could produce the required subsurface geometries and explain other perplexing characteristics of these rocks. Early Mesozoic Alaska, from the North Slope southward to the interior, may have had many irregular extensional basins on a broad, distal continental shelf. This original tectonic setting may apply elsewhere in Cordilleran-type margins where appropriate mafic and ultramafic analogs are present.

  1. Health Information in Somali (af Soomaali): MedlinePlus

    MedlinePlus

    ... af Soomaali (Somali) Bilingual PDF Health Information Translations Tornadoes Sirens and Telephone Alerts - English Firimbiyada iyo Digniinaha telefonka - af Soomaali (Somali) PDF Healthy Roads Media Tornadoes - English Dabayl xoog badan (Ufo) - af Soomaali (Somali) ...

  2. River mainstem thermal regimes influence population structuring within an Appalachian brook trout population

    USGS Publications Warehouse

    Aunins, Aaron W.; Petty, J. Todd; King, Timothy L.; Schilz, Mariya; Mazik, Patricia M.

    2015-01-01

    Brook trout (Salvelinus fontinalis) often exist as highly differentiated populations, even at small spatial scales, due either to natural or anthropogenic sources of isolation and low rates of dispersal. In this study, we used molecular approaches to describe the unique population structure of brook trout inhabiting the Shavers Fork watershed, located in eastern West Virginia, and contrast it to nearby populations in tributaries of the upper Greenbrier River and North Fork South Branch Potomac Rivers. Bayesian and maximum likelihood clustering methods identified minimal population structuring among 14 collections of brook trout from throughout the mainstem and tributaries of Shavers Fork, highlighting the role of the cold-water mainstem for connectivity and high rates of effective migration among tributaries. In contrast, the Potomac and Greenbrier River collections displayed distinct levels of population differentiation among tributaries, presumably resulting from tributary isolation by warm-water mainstems. Our results highlight the importance of protecting and restoring cold-water mainstem habitats as part of region-wide brook trout conservation efforts. In addition, our results from Shavers Fork provide a contrast to previous genetic studies that characterize Appalachian brook trout as fragmented isolates rather than well-mixed populations. Additional study is needed to determine whether the existence of brook trout as genetically similar populations among tributaries is truly unique and whether connectivity among brook trout populations can potentially be restored within other central Appalachian watersheds.

  3. Past and Projected Changes in Snowpack and Soil Frost at the Hubbard Brook Experimental Forest, New Hampshire

    NASA Astrophysics Data System (ADS)

    Campbell, J. L.; Ollinger, S. V.; Flerchinger, G. N.; Wicklein, H.; Hayhoe, K.; Bailey, A. S.

    2008-12-01

    Long-term empirical data from the Hubbard Brook Experimental Forest in New Hampshire show that air temperature has increased significantly by an average of 0.023 degrees C per year over the last 50 years of measurement. The warmer climate has caused significant declines in snow depth, snow water equivalent, and snow cover duration. Paradoxically, it has been suggested that warmer air temperatures may result in colder soil temperatures (and more soil frost) since there will be less snow cover insulating soils during winter. This prediction is supported by snow depth manipulation experiments, which have shown that soil frost depth increases when snow is removed. However it is unclear how well these experiments represent conditions associated with actual climate change. A thorough understanding of the influence of climate on soil frost is critical because it can have a profound effect on many hydrological, chemical and biological processes. Hubbard Brook has one of the longest records of soil frost field measurements in the northeastern US (45 years); however, high interannual variability and the infrequency of major soil frost events limit the ability to detect long-term trends. As an alternative to field measurements, soil frost can be modeled reliably using knowledge of the physics of energy and water transfer. In this application, we used the Simultaneous Heat and Water Model (SHAW) driven by statistically downscaled climate data from two Atmosphere-Ocean General Circulation Models (HadCM3, PCM). The SHAW model was run through the end of this century under two climate scenarios. Results indicate significant decreases in modeled soil frost due to a combination of warmer fall air temperatures and minimal declines in snowpack depth caused by greater winter precipitation. These findings counter the widely held belief that climate change will increase the depth, frequency and duration of soil frost.

  4. Stony Brook's Graduate Courses in Clear, Vivid, Conversational Communication

    NASA Astrophysics Data System (ADS)

    Bass, E.

    2011-12-01

    Graduate students in the sciences at Stony Brook University are taking for-credit courses to learn to communicate more effectively about science with people outside their disciplines, including public officials, the press, students, potential funders and employers, colleagues in other fields, and the general public. Five Communicating Science courses are offered; two more will be added in January, 2012. The courses are offered by the School of Journalism and developed by the Center for Communicating Science (CCS). This interdisciplinary center was founded in 2009, with the participation of Alan Alda, the actor, writer, director and longtime advocate for science, who is a Visiting Professor at Stony Brook. At the core of the program are three 1-credit (14-hour) modules that rely on experiential learning, repeated practice and immediate, interactive feedback. In Distilling Your Message, students practice speaking clearly, vividly and conversationally about their work at different levels of complexity and formality to different audiences, using storytelling techniques where appropriate. In Writing for the Public, they extend these skills into writing. In Improvisation for Scientists, the most unconventional of the courses, students play improvisational theater games to help themselves connect more directly, personally and responsively with their audiences. In their first two semesters, the courses are expected to serve about 90 students, taking a total of about 180 credits. Most of the courses have filled quickly, mixing master's and doctoral students from more than a dozen fields, including marine and atmospheric sciences. Three to six credits of Communicating Science courses are required for students in two programs, an MA in Marine Conservation and Policy and an Advanced Certificate in Health Communications. The content and methods of the courses are based largely on lessons learned from evaluations of all-day workshops that CCS has conducted for more than 250

  5. Decontamination of the Plum Brook Reactor Facility Hot Cells

    SciTech Connect

    Peecook, K.M.

    2008-07-01

    The NASA Plum Brook Reactor Facility decommissioning project recently completed a major milestone with the successful decontamination of seven hot cells. The cells included thick concrete walls and leaded glass windows, manipulator arms, inter cell dividing walls, and roof slabs. There was also a significant amount of embedded conduit and piping that had to be cleaned and surveyed. Prior to work starting evaluation studies were performed to determine whether it was more cost effective to do this work using a full up removal approach (rip and ship) or to decontaminate the cells to below required clean up levels, leaving the bulk of the material in place. This paper looks at that decision process, how it was implemented, and the results of that effort including the huge volume of material that can now be used as fill during site restoration rather than being disposed of as LLRW. (authors)

  6. Geological mapping in Doonerak Fenster, Central Brooks Range, Alaska

    SciTech Connect

    Mull, C.C.; Adams, K.E.; Dillon, J.T.

    1985-04-01

    Mapping of the north flank of the Doonerak fenster has traced the Amawk thrust, the sole fault of the Endicott Mountains allochthon, from the North Fork of the Koyukuk River - Mount Doonerak area eastward for more than 40 km (25 mi) to the east plunge of the Doonerak anticline at Koyuktuvuk Creek near the Dietrich River. Mapping has concentrated on the structural style of the area and on the autochthonous or parautochthonous Carboniferous Lisburne Group, Kayak shale, Kekiktuk Conglomerate - which are present along most of the anticline - and Triassic Karen Creek Sandstone, Triassic Shublik Formation, and Permian-Triassic Sadlerochit Group - which are present only in the west. This Triassic to Mississippian section closely resembles the coeval autochthonous to Parautochthonous Ellesmerian section of the subsurface to the north and in the Brooks Range to the northeast.

  7. Structural architecture of the central Brooks Range foothills, Alaska

    USGS Publications Warehouse

    Moore, Thomas E.; Potter, Christopher J.; O'Sullivan, Paul B.

    2002-01-01

    Five structural levels underlie the Brooks Range foothills, from lowest to highest: (1) autochthon, at a depth of ~9 km; (2) Endicott Mountains allochthon (EMA), thickest under the northern Brooks Range (>15 km) and wedging out northward above the autochthon; (3) higher allochthons (HA), with a composite thickness of 1.5+ km, wedging out northward at or beyond the termination of EMA; (4) Aptian-Albian Fortress Mountain Formation (FM), deposited unconformably on deformed EMA and HA and thickening northward into a >7-km-thick succession of deformed turbidites (Torok Formation); (5) gently folded Albian-Cenomanian deltaic deposits (Nanushuk Group). The dominant faulting pattern in levels 2-3 is thin-skinned thrusting and thrust-related folds formed before deposition of Cretaceous strata. These structures are cut by younger steeply south-dipping reverse faults that truncate and juxtapose structural levels 1-4 and expose progressively deeper structural levels to the south. Structural levels 4-5 are juxtaposed along a north-dipping zone of south-vergent folds and thrusts. Stratigraphic and fission-track age data suggest a kinematic model wherein the foothills belt was formed first, by thrusting of HA and EMA as deformational wedges onto the regionally south-dipping authochon at 140-120Ma. After deposition of FM and Torok during mid-Cretaceous hinterland extension and uplift, a second episode of contractional deformation at 60 Ma shortened the older allochthonous deformational wedges (EMA, HA) and overlying strata on north-vergent reverse faults. To the north, where the allochthons wedge out, shortening caused duplexing in the Torok and development of a triangle zone south of the Tuktu escarpment.

  8. Predicting Brook Trout occurrence in stream reaches throughout their native range in the eastern United States

    USGS Publications Warehouse

    DeWeber, Jefferson Tyrell; Wagner, Tyler

    2015-01-01

    The Brook Trout Salvelinus fontinalis is an important species of conservation concern in the eastern USA. We developed a model to predict Brook Trout population status within individual stream reaches throughout the species’ native range in the eastern USA. We utilized hierarchical logistic regression with Bayesian estimation to predict Brook Trout occurrence probability, and we allowed slopes and intercepts to vary among ecological drainage units (EDUs). Model performance was similar for 7,327 training samples and 1,832 validation samples based on the area under the receiver operating curve (∼0.78) and Cohen's kappa statistic (0.44). Predicted water temperature had a strong negative effect on Brook Trout occurrence probability at the stream reach scale and was also negatively associated with the EDU average probability of Brook Trout occurrence (i.e., EDU-specific intercepts). The effect of soil permeability was positive but decreased as EDU mean soil permeability increased. Brook Trout were less likely to occur in stream reaches surrounded by agricultural or developed land cover, and an interaction suggested that agricultural land cover also resulted in an increased sensitivity to water temperature. Our model provides a further understanding of how Brook Trout are shaped by habitat characteristics in the region and yields maps of stream-reach-scale predictions, which together can be used to support ongoing conservation and management efforts. These decision support tools can be used to identify the extent of potentially suitable habitat, estimate historic habitat losses, and prioritize conservation efforts by selecting suitable stream reaches for a given action. Future work could extend the model to account for additional landscape or habitat characteristics, include biotic interactions, or estimate potential Brook Trout responses to climate and land use changes.

  9. Giant American brook lampreys, Lampetra lamottei, in the upper Great Lakes

    USGS Publications Warehouse

    Manion, Patrick J.; Purvis, Harold A.

    1971-01-01

    Five female American brook lampreys, Lampetra lamottei, collected in lakes Michigan and Huron averaged nearly twice as long and about six times as heavy as American brook lampreys of normal size. Three factors suggested that the giant lampreys may have fed parasitically after metamorphosis: morphological adaptations of the species for parasitic life, their large size, and absence of extremely large ammocetes among a million sampled.

  10. Pingos in the Brooks Range, northern Alaska, U.S.A.

    USGS Publications Warehouse

    Hamilton, T.D.; Obi, Curtis M.

    1982-01-01

    Some 70 pingos occur at 27 separate localities within and near the Brooks Range. The pingos are distributed through mountain valleys at altitudes up to 725m and in terrain glaciated as recently as late Wisconsinan time. Pingos are particularly abundant in the Koyukuk and Chandalar drainage systems of the south-central Brooks Range, where they may be associated with structural features of regional extent.-from Authors

  11. Landscape models of brook trout abundance and distribution in lotic habitat with field validation

    USGS Publications Warehouse

    McKenna, James E.; Johnson, James H.

    2011-01-01

    Brook trout Salvelinus fontinalis are native fish in decline owing to environmental changes. Predictions of their potential distribution and a better understanding of their relationship to habitat conditions would enhance the management and conservation of this valuable species. We used over 7,800 brook trout observations throughout New York State and georeferenced, multiscale landscape condition data to develop four regionally specific artificial neural network models to predict brook trout abundance in rivers and streams. Land cover data provided a general signature of human activity, but other habitat variables were resistant to anthropogenic changes (i.e., changing on a geological time scale). The resulting models predict the potential for any stream to support brook trout. The models were validated by holding 20% of the data out as a test set and by comparison with additional field collections from a variety of habitat types. The models performed well, explaining more than 90% of data variability. Errors were often associated with small spatial displacements of predicted values. When compared with the additional field collections (39 sites), 92% of the predictions were off by only a single class from the field-observed abundances. Among “least-disturbed” field collection sites, all predictions were correct or off by a single abundance class, except for one where brown trout Salmo trutta were present. Other degrading factors were evident at most sites where brook trout were absent or less abundant than predicted. The most important habitat variables included landscape slope, stream and drainage network sizes, water temperature, and extent of forest cover. Predicted brook trout abundances were applied to all New York streams, providing a synoptic map of the distribution of brook trout habitat potential. These fish models set benchmarks of best potential for streams to support brook trout under broad-scale human influences and can assist with planning and

  12. Spatial and seasonal dynamics of brook trout populations inhabiting a central Appalachian watershed

    USGS Publications Warehouse

    Petty, J.T.; Lamothe, P.J.; Mazik, P.M.

    2005-01-01

    We quantified the watershed-scale spatial population dynamics of brook trout Salvelinus fontinalis in the Second Fork, a third-order tributary of Shavers Fork in eastern West Virginia. We used visual surveys, electrofishing, and mark-recapture techniques to quantify brook trout spawning intensity, population density, size structure, and demographic rates (apparent survival and immigration) throughout the watershed. Our analyses produced the following results. Spawning by brook trout was concentrated in streams with small basin areas (i.e., segments draining less than 3 km2), relatively high alkalinity (>10 mg CaCO3/L), and high amounts of instream cover. The spatial distribution of juvenile and small-adult brook trout within the watershed was relatively stable and was significantly correlated with spawning intensity. However, no such relationship was observed for large adults, which exhibited highly variable distribution patterns related to seasonally important habitat features, including instream cover, stream depth and width, and riparian canopy cover. Brook trout survival and immigration rates varied seasonally, spatially, and among size-classes. Differential survival and immigration tended to concentrate juveniles and small adults in small, alkaline streams, whereas dispersal tended to redistribute large adults at the watershed scale. Our results suggest that spatial and temporal variations in spawning, survival, and movement interact to determine the distribution, abundance, and size structure of brook trout populations at a watershed scale. These results underscore the importance of small tributaries for the persistence of brook trout in this watershed and the need to consider watershed-scale processes when designing management plans for Appalachian brook trout populations. ?? Copyright by the American Fisheries Society 2005.

  13. Non-indigenous brook trout and the demise of Pacific salmon: a forgotten threat?

    PubMed Central

    Levin, Phillip S; Achord, Stephen; Feist, Blake E; Zabel, Richard W

    2002-01-01

    Non-indigenous species may be the most severe environmental threat the world now faces. Fishes, in particular, have been intentionally introduced worldwide and have commonly caused the local extinction of native fish. Despite their importance, the impact of introduced fishes on threatened populations of Pacific salmon has never been systemically examined. Here, we take advantage of several unique datasets from the Columbia River Basin to address the impact of non-indigenous brook trout, Salvelinus fontinalis, on threatened spring/summer-run chinook salmon, Oncorhynchus tshawytscha. More than 41 000 juvenile chinook were individually marked, and their survival in streams without brook trout was nearly double the survival in streams with brook trout. Furthermore, when brook trout were absent, habitat quality was positively associated with chinook survival, but when brook trout were present no relationship between chinook survival and habitat quality was evident. The difference in juvenile chinook survival between sites with, and without, brook trout would increase population growth rate (lambda) by ca. 2.5%. This increase in lambda would be sufficient to reverse the negative population growth observed in many chinook populations. Because many of the populations we investigated occur in wilderness areas, their habitat has been considered pristine; however, our results emphasize that non-indigenous species are present and may have a dramatic impact, even in remote regions that otherwise appear pristine. PMID:12204126

  14. Movement patterns of Brook Trout in a restored coastal stream system in southern Massachusetts

    USGS Publications Warehouse

    Snook, Erin L.; Letcher, Benjamin H.; Dubreuil, Todd L.; Zydlewski, Joseph; O'Donnell, Matthew J.; Whiteley, Andrew R.; Hurley, Stephen T.; Danylchuk, Andy J.

    2016-01-01

    Coastal Brook Trout (Salvelinus fontinalis) populations are found from northern Canada to New England. The extent of anadromy generally decreases with latitude, but the ecology and movements of more southern populations are poorly understood. We conducted a 33-month acoustic telemetry study of Brook Trout in Red Brook, MA, and adjacent Buttermilk Bay (marine system) using 16 fixed acoustic receivers and surgically implanting acoustic transmitters in 84 individuals. Tagged Brook Trout used the stream, estuary (50% of individuals) and bay (10% of individuals). Movements into full sea water were brief when occurring. GAMM models revealed that transitions between habitat areas occurred most often in spring and fall. Environmental data suggest that use of the saline environment is limited by summer temperatures in the bay. Movements may also be related to moon phase. Compared to more northern coastal populations of Brook Trout, the Red Brook population appears to be less anadromous overall, yet the estuarine segment of the system may have considerable ecological importance as a food resource.

  15. Learning to Communicate Science: Stony Brook University's Approach

    NASA Astrophysics Data System (ADS)

    Bass, E.

    2012-12-01

    Stony Brook University offers an unusual series of short courses to help science graduate students learn to communicate more effectively about science with people outside their disciplines, including the public, public officials, potential funders and employers, students, the press, and colleagues in other fields. The courses include six 1-credit (14-hour) modules in oral and written communication that rely on practice and interactive feedback. More than 120 master's and PhD students, from more than 16 departments, have taken at least one of the courses since spring 2011. Most students who try one module end up taking two or three. An additional course for medical and nursing students was added in fall 2012. The courses are offered in the School of Journalism and were developed by the Center for Communicating Science (CCS). CCS was founded in 2009, with the participation of Alan Alda, the actor, writer, and longtime advocate for science, who is a Visiting Professor at Stony Brook. The Communicating Science courses have received strong institutional support and enthusiastic reviews. They are required by two programs, an MA in Marine Conservation and Policy and an Advanced Certificate in Health Communications. Two successive Provosts have subsidized course costs for PhD students, and Graduate School leaders are working to establish a steady funding stream to allow expansion of the program. Our aspiration at CCS is for every science graduate student to receive some training in communicating about science to the public. Several factors have helped in establishing the program: --CCS' multidisciplinary nature helped build support, with participation by faculty from across the campus, including not only the natural sciences, engineering, and medicine, but journalism, theatre arts, and the Writing Program, as well as nearby Brookhaven National Laboratory and Cold Spring Harbor Laboratory. --Before offering courses, CCS conducted all-day workshops and high

  16. Enterococcus rivorum sp. nov., from water of pristine brooks.

    PubMed

    Niemi, R Maarit; Ollinkangas, Tuula; Paulin, Lars; Svec, Pavel; Vandamme, Peter; Karkman, Antti; Kosina, Marcel; Lindström, Kristina

    2012-09-01

    A significant number of Enterococcus strains from pristine waters of two brooks in Finland formed a distinct cluster on the basis of whole-cell protein fingerprinting by one-dimensional SDS-PAGE. The strains shared the following characteristics. Cells were ovoid, Gram-positive-staining and non-spore-forming, appearing singly or in pairs or chains. They were facultatively anaerobic and catalase-negative. Growth in broth containing 6.5 % NaCl or at 45 °C was weak or absent. Production of D antigen was variable. The strains tolerated 60 °C for 30 min, 40 % bile and tellurite, hydrolysed aesculin strongly and gelatin weakly, produced no acid from hippurate and did not reduce it, grew weakly at 10 °C, showed a strong reaction for the Voges-Proskauer test and produced acid from methyl α-d-glucoside, mannitol, sorbitol and sucrose, with weak or no production of acid from methyl α-d-mannoside, l-arabinose, gluconate and l-xylose. Several of the strains were selected for identification on the basis of sequencing of almost the whole 16S rRNA gene and partial atpA and pheS genes and of (GTG)(5)-PCR fingerprints. Partial atpA and pheS gene sequencing was also performed for those type strains of Enterococcus species without available sequences in the database. The pristine brook isolates formed a novel species, for which the name Enterococcus rivorum sp. nov. (type strain S299(T) = HAMBI 3055(T) = LMG 25899(T) = CCM 7986(T)) is proposed. On the basis of 16S rRNA gene sequence similarity, E. rivorum sp. nov. is related to the Enterococcus faecalis genogoup. It is distinguished from described Enterococcus species on the basis of 16S rRNA, atpA and pheS gene sequences and whole-cell protein and (GTG)(5)-PCR fingerprints. It is most closely related to E. faecalis, but DNA-DNA hybridization confirms it to represent a novel species.

  17. Level II scour analysis for Bridge 54 (RANDTH00BR0054) on Brook Street, crossing Thayer Brook, Randolph, Vermont

    USGS Publications Warehouse

    Olson, Scott A.

    1996-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure RANDTH00BR0054 on Brook Street crossing Thayer Brook, Randolph, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). A Level I study is included in Appendix E of this report. A Level I study provides a qualitative geomorphic characterization of the study site. Information on the bridge available from VTAOT files was compiled prior to conducting Level I and Level II analyses and can be found in Appendix D. The site is in the Green Mountain physiographic division of central Vermont in the town of Randolph. The 5.39-mi2 drainage area is in a predominantly rural basin. In the vicinity of the study site, the immediate banks are forested. In the study area, Thayer Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 60 ft and an average channel depth of 3 ft. The predominant channel bed materials are gravel and cobble (D50 is 42.4 mm or 0.139 ft). The geomorphic assessment at the time of the Level I and Level II site visits on August 3, 1994 and December 5, 1994, indicated that the reach was vertically and laterally unstable. This assessment was due to the extreme channel misalignment with the bridge opening and the presence of a drop structure downstream of the bridge protecting against channel degradation. The Brook Street crossing of Thayer Brook is a 34-ft-long, two-lane bridge consisting of one 31-foot concrete span (Vermont Agency of Transportation, written communication, August 2, 1994). The bridge is supported by vertical, concrete abutments with wingwalls. Streamflow attacks the upstream right wingwall and has undermined the upstream end of the right abutment. Type-2 stone fill (less than 36 inches diameter) exists only on the upstream and downstream sides of the left

  18. Korean Atrial Fibrillation (AF) Network: Genetic Variants for AF Do Not Predict Ablation Success

    PubMed Central

    Choi, Eue-Keun; Park, Jae Hyung; Lee, Ji-Young; Nam, Chung Mo; Hwang, Min Ki; Uhm, Jae-Sun; Joung, Boyoung; Ko, Young-Guk; Lee, Moon-Hyoung; Lubitz, Steven A; Ellinor, Patrick T; Pak, Hui-Nam

    2015-01-01

    Background Genomewide association studies have identified several loci associated with atrial fibrillation (AF) and have been reportedly associated with response to catheter ablation for AF in patients of European ancestry; however, associations between top susceptibility loci and AF recurrence after ablation have not been examined in Asian populations. We examined whether the top single nucleotide polymorphisms (SNPs) at chromosomes 4q25 (PITX2), 16q22 (ZFHX3), and 1q21 (KCNN3) were associated with AF in a Korean population and whether these SNPs were associated with clinical outcomes after catheter ablation for AF. Methods and Results We determined the association between 4 SNPs and AF in 1068 AF patients who underwent catheter ablation (74.6% male, aged 57.5±10.9 years, 67.9% paroxysmal AF) and 1068 age- and sex-matched controls. The SNPs at the PITX2 and ZFHX3 loci, but not the KCNN3 locus, were significantly associated with AF (PITX2/rs6843082_G: odds ratio 3.41, 95% CI 2.55 to 4.55, P=1.32×10−16; PITX2/rs2200733_T: odds ratio 2.05, 95% CI 1.66 to 2.53, P=2.20×10−11; ZFHX3/rs2106261_A: odds ratio 2.33, 95% CI 1.87 to 2.91, P=3.75×10−14; KCNN3/rs13376333_T: odds ratio 1.74, 95% CI 0.93 to 3.25, P=0.085). Among those patients who underwent catheter ablation for AF, none of the top AF-associated SNPs were associated with long-term clinical recurrence of AF after catheter ablation. Conclusions SNPs at the PITX2 and ZFHX3 loci were strongly associated with AF in Korean patients. In contrast to prior reports, none of the 4 top AF-susceptibility SNPs predicted clinical recurrence after catheter ablation. PMID:26272656

  19. Geohydrology of Brooks, Lowndes, and western Echols counties, Georgia

    USGS Publications Warehouse

    Krause, R.E.

    1979-01-01

    The principal artesian aquifer, a limestone of Eocene to Miocene age, is the main source of water supply for Brooks, Lowndes, and western Echols Counties in south Georgia. Pumpage of about 22 million gallons perday from this prolific aquifer has not posed any problems regarding declining water levels or depletion of the reservoir. However, water-quality problems do occur in the Valdosta area. Seepage-run measurements indicate that the Withlacoochee River north of Valdosta contributes an average of 112 cubic feet per second of water to caverns and sinkholes that recharge the aquifer. Wells near the recharge area withdraw relatively unfiltered water with iron concentration and color intensity exceeding standards for drinking water. South of Valdosta, water from the aquifer contains as much as 3.0 milligrams per liter of hydrogen sulfide, rendering the water unfit for drinking. Water high in sulfate concentration occurs below 550 feet in the lower part of the aquifer in Valdosta, and is assumed to be present at that depth throughout the study area. Generally, sufficient quantities of freshwater can be obtained without drilling to this depth.

  20. Brooke-Spiegler Syndrome and Phenotypic Variants: An Update.

    PubMed

    Kazakov, Dmitry V

    2016-06-01

    Brooke-Spiegler syndrome (BSS) is an inherited autosomal dominant disease characterized by the development of multiple adnexal cutaneous neoplasms most commonly spiradenoma, cylindroma, spiradenocylindroma, and trichoepithelioma. Multiple familial trichoepithelioma (MFT) is a phenotypic variant of the disease characterized by the development of numerous trichoepitheliomas (cribriform trichoblastoma) only. Malignant tumors arise in association with preexisting benign cutaneous neoplasms in about 5-10% of the patients . Apart from the skin, major and minor salivary glands have been rarely involved in BSS patients. Extremely rare is the occurrence of breast tumors (cylindroma). The gene implicated in the pathogenesis of the disease is the CYLD gene, a tumor suppressor gene located on chromosome 16q12-q13. Germline CYLD mutations are detected in about 80-85% of patients with the classical BSS phenotype and in about 40-50% of the individuals with the MFT phenotype using a PCR based approach with analysis of exonic sequences and exon-intron junctions of the CYLD gene. There appears to be no genotype-phenotype correlations with respect to the severity of the disease, the possibility of malignant transformation, and development of extracutaneous lesions.

  1. Spatial application of BROOK90 in managed Inner Mongolia grasslands: a case study on evapotranspiration from 2002 to 2011

    NASA Astrophysics Data System (ADS)

    Schaffrath, D.; Bernhofer, C.

    2012-12-01

    Water balance losses in semi-arid grasslands are determined by evapotranspiration (ET). Although previous studies demonstrated point measurements of ET in Inner Mongolia grasslands are valuable at the field scale, little is known about the spatial distribution of ET in this area, where precipitation and ET have a high spatial variability. We present a simple method for modelling spatial ET at 1 km and 8-day resolution with the hydrological model BROOK90 and MODIS data for the 2,600 sqkm of typical steppe in the Xilin river catchment and the model results for the main vegetation periods (23 April to 28 August) of the last 10 years. BROOK90 is a physically-based, process-orientated hydrological model, that separates the productive transpiration (T) and the non-productive evaporation (E) based on the Shuttleworth and Wallace modification of the Penman-Monteith equation. BROOK90 was parameterised from eddy covariance data. After model parameterisation no additional ground-based data are needed for this method, because the daily model input data (precipitation, minimum and maximum air temperature) were derived from manipulation of MODIS leaf area index and land surface temperature data products. The spatial mean ET during the 10 years of the study period was 156 mm with a standard deviation of 22 mm and a coefficient of variation of 28%. Lowest mean ET was 119 mm in 2009 and highest mean ET was 197 mm in 2003. However, for individual pixels, ET varied from 67 mm to 319 mm. Maximum ET in this area varied between 3 mm d-1 and 5 mm d-1 during 8-day intervals. The analysis of spatial and temporal patterns of E and T demonstrates, our method could be a useful tool towards a better understanding of evapotranspiration in managed grassland of Inner Mongolia, and may help to adjust unsustainable land management practices towards a better adapted livestock management. ET in 2006: Probability density functions and summary statistics (first, second and third quartile) of the

  2. Evaluation of catch-and-release regulations on Brook Trout in Pennsylvania streams

    USGS Publications Warehouse

    Jason Detar,; Kristine, David; Wagner, Tyler; Greene, Tom

    2014-01-01

    In 2004, the Pennsylvania Fish and Boat Commission implemented catch-and-release (CR) regulations on headwater stream systems to determine if eliminating angler harvest would result in an increase in the number of adult (≥100 mm) or large (≥175 mm) Brook Trout Salvelinus fontinalis. Under the CR regulations, angling was permitted on a year-round basis, no Brook Trout could be harvested at any time, and there were no tackle restrictions. A before-after–control-impact design was used to evaluate the experimental regulations. Brook Trout populations were monitored in 16 treatment (CR regulations) and 7 control streams (statewide regulations) using backpack electrofishing gear periodically for up to 15 years (from 1990 to 2003 or 2004) before the implementation of the CR regulations and over a 7–8-year period (from 2004 or 2005 to 2011) after implementation. We used Poisson mixed models to evaluate whether electrofishing catch per effort (CPE; catch/100 m2) of adult (≥100 mm) or large (≥175 mm) Brook Trout increased in treatment streams as a result of implementing CR regulations. Brook Trout CPE varied among sites and among years, and there was no significant effect (increase or decrease) of CR regulations on the CPE of adult or large Brook Trout. Results of our evaluation suggest that CR regulations were not effective at improving the CPE of adult or large Brook Trout in Pennsylvania streams. Low angler use, high voluntary catch and release, and slow growth rates in infertile headwater streams are likely the primary reasons for the lack of response.

  3. Degradation of AF1Q by chaperone-mediated autophagy

    SciTech Connect

    Li, Peng; Ji, Min; Lu, Fei; Zhang, Jingru; Li, Huanjie; Cui, Taixing; Li Wang, Xing; Tang, Dongqi; Ji, Chunyan

    2014-09-10

    AF1Q, a mixed lineage leukemia gene fusion partner, is identified as a poor prognostic biomarker for pediatric acute myeloid leukemia (AML), adult AML with normal cytogenetic and adult myelodysplastic syndrome. AF1Q is highly regulated during hematopoietic progenitor differentiation and development but its regulatory mechanism has not been defined clearly. In the present study, we used pharmacological and genetic approaches to influence chaperone-mediated autophagy (CMA) and explored the degradation mechanism of AF1Q. Pharmacological inhibitors of lysosomal degradation, such as chloroquine, increased AF1Q levels, whereas activators of CMA, including 6-aminonicotinamide and nutrient starvation, decreased AF1Q levels. AF1Q interacts with HSPA8 and LAMP-2A, which are core components of the CMA machinery. Knockdown of HSPA8 or LAMP-2A increased AF1Q protein levels, whereas overexpression showed the opposite effect. Using an amino acid deletion AF1Q mutation plasmid, we identified that AF1Q had a KFERQ-like motif which was recognized by HSPA8 for CMA-dependent proteolysis. In conclusion, we demonstrate for the first time that AF1Q can be degraded in lysosomes by CMA. - Highlights: • Chaperone-mediated autophagy (CMA) is involved in the degradation of AF1Q. • Macroautophagy does not contribute to the AF1Q degradation. • AF1Q has a KFERQ-like motif that is recognized by CMA core components.

  4. Cement stratigraphy of the Lisburne Group, northeastern Brooks Range, Alaska

    SciTech Connect

    Carlson, R.C.; Goldstein, R.H. . Geology Dept.)

    1992-01-01

    Cement stratigraphy serves as a descriptive framework for the interpretation of the diagenetic history of the Carboniferous Lisburne Group, northeastern Brooks Range, Alaska. The Lisburne is a sequence of shallow-water, marine carbonate rocks that have experienced a wide spectrum of diagenetic events: early marine diagenesis, early subaerial exposure, significant erosion and karstification following final Lisburne deposition, deep burial of at least 3,000 meters, compressional tectonism, and final uplift into modern mountain ranges. Compositional zones in the calcite cements were identified by using stains for ferroan calcite and cathodoluminescence microscopy. The cements are, from oldest to youngest: A1-nonferroan, nonluminescent or multibanded calcite; B1-nonferroan to low-ferroan, dull luminescent calcite; C1-ferroan, very-dull luminescent calcite; B2-nonferroan, dull luminescent calcite; A2-nonferroan calcite with 1 or 2 sets of nonluminescent and bright zones; C2-ferroan, very-dull luminescent calcite; Be-nonferroan, dull luminescent calcite. Petrographic studies of cross-cutting relationships show that A1 cements predate or are synchronous with surfaces of subaerial exposure within the Lisburne Group. The cross-cutting relationships include truncation of cements by early fractures, non-marine fissure fills, and at clast margins of autoclastic breccias. Similarly, B1 and C1 cements predate the major unconformity at the top of the Lisburne Group, hence, these cements are pre-Permian in age and may well have precipitated from fresh groundwaters introduced during development of the sub-Permian unconformity. B2 and C2 cements are present in the Permian Echooka formation overlying the Lisburne Group and, thus, can be dated as post-Pennsylvanian. B3 cements are Cretaceous or younger in age.

  5. Spring and aufeis (icing) hydrology in Brooks Range, Alaska

    NASA Astrophysics Data System (ADS)

    Yoshikawa, Kenji; Hinzman, Larry D.; Kane, Douglas L.

    2007-12-01

    Remote sensing studies and field hydrometeorological and geophysical investigations were employed to characterize several aufeis fields in the Brooks Range, Alaska. Geochemical studies were undertaken together with field hydrological measurements to better understand the chemical and thermal properties of stream base flow (groundwater spring) that contributes to winter aufeis development. The spring water temperature was measured at several major aufeis fields using data loggers throughout the year. Aufeis is an important water storage component in the Arctic and influences local ecology and geomorphology. Synthetic aperture radar (SAR) is a useful and sensitive sensor for aufeis detection and for estimating the total volume of storage as well as freeze/thaw conditions. The SAR analysis indicated that the volume of aufeis formed in winter is 27-30% of the annual groundwater discharge in the Kuparuk River. Visible and near-IR satellite imagery indicated many of the high-discharge springs (more than 10-1000 1/s) and aufeis fields are centered around an elevation of 600 m a.s.l. in limestone areas with glacial morphology. Geomorphological investigations indicate that many of springs have continually existed from at least the last glaciation. Microwave data (SAR), thermal infrared, short wave infrared, and visible and near-IR bands were all used to observe the growth, decay, and distribution of aufeis deposits. The remotely sensed data indicate that the distribution of the aufeis deposits today is nearly the same as it was in past colder periods; this was mainly determined by mapping the distributed carbonate precipitates. Also, spring water temperatures and discharge volumes are predictable from the aufeis field size using remotely sensed techniques.

  6. Diagenesis of the Lisburne Group, northeastern Brooks Range, Alaska

    SciTech Connect

    Carlson, R.C.; Goldstein, R.H.; Enos, P.

    1995-05-01

    Petrographic cathodoluminescence studies of the cement stratigraphy of the Lisburne Group yield insights on its diagenetic history. Crosscutting relationships between features of subaerial exposure and calcite cements show that early generations of nonferroan, nonluminescent and multibanded-luminescent calcites are synchronous with or postdated by subaerial exposure surfaces within the Lisburne. Surfaces of subaerial exposure occur at 18 horizons within the Lisburne and are distinguished by features as laminated crusts, rhizoliths, autoclastic breccia, fissure fills, mud cracks, and erosional surfaces. Crosscutting relationships also occur between calcite cements and clasts in karst breccias and conglomerates that formed along the sub-Permian unconformity at the top of the Lisburne. The sub-Permian unconformity postdates later generations of calcite cement. These cements formed in the following sequence: nonferroan to low-ferroan, dully luminescent calcite; ferroan, very-dully luminescent calcite; and second generation of nonferroan, multibanded calcite. The crosscutting relationships not only constrain the timing of cement precipitation, but also suggest that the cements probably were precipitated from meteoric groundwaters introduced during subaerial exposure of the Lisburne platform. Late cements in the Lisburne postdate the Permian Echooka Formation. These cements are low-ferroan, moderately-bright to dully luminescent calcite, followed by a second generation of ferroan, very-dully luminescent calcite. Features of compaction and pressure solution are coincident with the precipitation of the late ferroan calcite and further constrain its timing to deep burial of the Lisburne. The youngest phase of calcite cement precipitated in the Lisburne Group is nonferroan, very-dully luminescent calcite. It commonly fills tectonically-induced shear fractures, indicating precipitation after the onset of Cretaceous (and/or Cenozoic) tectonism in the northeastern Brooks Range.

  7. Structural problems of the Brooks Range ophiolite, Alaska

    SciTech Connect

    Harris, R.A.; Bickerstaff, D. . Dept. of Geology); Stone, D.B. . Geophysical Inst.)

    1993-04-01

    Structural and paleogeographic restorations of the Brooks Range ophiolite (hereafter BRO) and other associated mafic and ultramafic bodies of N. Alaska are difficult because of ambiguous relations between sheeted dikes, cover sediments, and steep NW and SE dipping magmatic flow fabrics. Paleomagnetically enhanced structural studies at Misheguk, Avan, and Siniktanneyak Mountains provide new constraints for the initial dip and sequence of deformation for various structural features of the BRO. The angle between magmatic layers near the petrologic moho and the paleomagnetic inclination of these layers is 50--63[degree] at Misheguk. High level gabbro layers that are disrupted by syn- and post-cooling intrusions display a greater variation. Assuming that the characteristic magnetization is primary, and that the primary inclination was > 80[degree], magmatic layers and the moho had initial dips from 17--40[degree]. These layers now dip 40--70[degree]SE suggesting some post-magmatic tilt. The variation of inclinations with depth in the ophiolite suggest that high level gabbro has tilted most. Sheeted dikes are documented at the Maiyumerak and Siniktanneyak ophiolite bodies. At both locations the dikes dip steeply and strike NE-SW. Sedimentary and volcanic flow layers associated with the dikes have the same strike and dip 0--30[degree]. Parallelism between various planar features throughout the BRO indicates that rotations about a vertical axis are either uniform throughout the ophiolite belt or negligible. Assuming the later, the BRO may represent a linear zone of SSZ magmatism that was oriented NE-SW prior to collision. Post-emplacement long wavelength folding of the ophiolite lid can account for its variation in facing direction and some steepening of magmatic layers.

  8. Tectonic evolution of the Brooks Range ophiolite, Alaska

    SciTech Connect

    Harris, R.A. . Dept. of Geology)

    1993-04-01

    Detailed studies of the composition, internal structure, and age of the Brooks Range ophiolite (BRO) and its metamorphic sole reveal new constraints for its tectonic evolution. The BRO consists of six separate thrust masses of consanguineous composition, internal organization, structure and age. Subophiolite metamorphic rocks are locally preserved along its structural base, which is well exposed in several places. The metamorphic sole is locally transitional with mafic volcanic sequences, chert, tuffs, and minor clastic sedimentary material of the Copter Peak Complex, which is correlative with the Angayucham terrane. This terrane is much older than, and chemically distinct from the BRO. The internal structure of the BRO is characterized by NE-SW trending igneous layers that expose the transition zone from crust to mantle. Residual mantle material consists of tectonized peridotite in abrupt contact with dunite pods up to 4 km thick. Ductile and brittle structures of the BRO preserve various phases of its dynamic evolution from a magma body to a fragmented thrust sheet. The earliest deformational effects are recorded by ductile lattice and shape fabrics in dunites and the layered series of the BRO. Magmatic flow planes generally parallel the petrologic moho, and dip 40[degree]--70[degree] to the NW and SE. Flow lineations consistently plunge ESE-ENE from 39[degree]--54[degree]. Igneous laminations and compositional layers represent patterns of magmatic flow in, and plastic deformation of, a cumulate sequence -- not the deposition pattern of cumulate layers. In the upper layered series, amphiboles with a shape-preferred orientation yield Ar/Ar plateau ages of 163--169 Ma. These ages overlap with plateau ages of the same kind from amphibolite of the metamorphic sole. This concordance in age indicates that cooling of the BRO coincided with its tectonic emplacement.

  9. HPLC and ELISA analyses of larval bile acids from Pacific and western brook lampreys

    USGS Publications Warehouse

    Yun, S.-S.; Scott, A.P.; Bayer, J.M.; Seelye, J.G.; Close, D.A.; Li, W.

    2003-01-01

    Comparative studies were performed on two native lamprey species, Pacific lamprey (Lampetra tridentata) and western brook lamprey (Lampetra richardsoni) from the Pacific coast along with sea lamprey (Petromyzon marinus) from the Great Lakes, to investigate their bile acid production and release. HPLC and ELISA analyses of the gall bladders and liver extract revealed that the major bile acid compound from Pacific and western brook larval lampreys was petromyzonol sulfate (PZS), previously identified as a migratory pheromone in larval sea lamprey. An ELISA for PZS has been developed in a working range of 20pg-10ng per well. The tissue concentrations of PZS in gall bladder were 127.40, 145.86, and 276.96??g/g body mass in sea lamprey, Pacific lamprey, and western brook lamprey, respectively. Releasing rates for PZS in the three species were measured using ELISA to find that western brook and sea lamprey released PZS 20 times higher than Pacific lamprey did. Further studies are required to determine whether PZS is a chemical cue in Pacific and western brook lampreys. ?? 2003 Elsevier Inc. All rights reserved.

  10. Conservation genetics of Lake Superior brook trout: Issues, questions, and directions

    USGS Publications Warehouse

    Wilson, C.C.; Stott, W.; Miller, L.; D'Amelio, S.; Jennings, Martin J.; Cooper, A.M.

    2008-01-01

    Parallel efforts by several genetic research groups have tackled common themes relating to management concerns about and recent rehabilitation opportunities for coaster brook trout Salvelinus fontinalis in Lake Superior. The questions that have been addressed include the evolutionary and genetic status of coaster brook trout, the degree of relatedness among coaster populations and their relationship to riverine tributary brook trout populations, and the role and effectiveness of stocking in maintaining and restoring coasters to Lake Superior. Congruent genetic results indicate that coasters are an ecotype (life history variant) rather than an evolutionarily significant unit or genetically distinct strain. Regional structure exists among brook trout stocks, coasters being produced from local populations. Introgression of hatchery genes into wild populations appears to vary regionally and may relate to local population size, habitat integrity, and anthropogenic pressures. Tracking the genetic diversity and integrity associated with captive breeding programs is helping to ensure that the fish used for stocking are representative of their source populations and appropriate for rehabilitation efforts. Comparative analysis of shared samples among collaborating laboratories is enabling standardization of genotype scoring and interpretation as well as the development of a common toolkit for assessing genetic structure and diversity. Incorporation of genetic data into rehabilitation projects will facilitate monitoring efforts and subsequent adaptive management. Together, these multifaceted efforts provide comprehensive insights into the biology of coaster brook trout and enhance restoration options. ?? Copyright by the American Fisheries Society 2008.

  11. Dietary calcein marking of brook trout, Atlantic salmon, yellow perch, and coho salmon scales

    USGS Publications Warehouse

    Honeyfield, D.C.; Ostrowski, C.S.; Fletcher, J.W.; Mohler, J.W.

    2006-01-01

    Brook trout Salvelinus fontinalis, Atlantic salmon Salmo salar, coho salmon Oncorhynchus kisutch, and yellow perch Perca flavescens fed calcein for 5 d showed characteristic calcein scale marks 7-10 d postmarking. In fish fed 0.75 or 1.25 g of calcein per kilogram of feed, the percentage of fish that exhibited a calcein mark was 100% in brook trout, 93-98% in Atlantic salmon, 60% in yellow perch, and 0% in coho salmon. However, when coho salmon were fed 5.25 g calcein/kg feed, 100% marking was observed 7-10 d postmarking. Brook trout were successfully marked twice with distinct bands when fed calcein 5 months apart. Brook trout scale pixel luminosity increased as dietary calcein increased in experiment 2. For the second calcein mark, scale pixel luminosity from brook trout fed 1.25 g calcein/kg feed was numerically higher (P < 0.08) than scales from fish fed 0.75 g calcein/kg feed. Mean pixel luminosity of calcein-marked Atlantic salmon scales was 57.7 for fish fed 0.75 g calcein/kg feed and 55.2 for fish fed 1.25 g calcein/kg feed. Although feed acceptance presented a problem in yellow perch, these experiments provide evidence that dietary calcein is a viable tool for marking fish for stock identification. ?? Copyright by the American Fisheries Society 2006.

  12. Science in Flux: NASA's Nuclear Program at Plum Brook Station 1955-2005

    NASA Technical Reports Server (NTRS)

    Bowles, Mark D.

    2006-01-01

    Science in Flux traces the history of one of the most powerful nuclear test reactors in the United States and the only nuclear facility ever built by NASA. In the late 1950's NASA constructed Plum Brook Station on a vast tract of undeveloped land near Sandusky, Ohio. Once fully operational in 1963, it supported basic research for NASA's nuclear rocket program (NERVA). Plum Brook represents a significant, if largely forgotten, story of nuclear research, political change, and the professional culture of the scientists and engineers who devoted their lives to construct and operate the facility. In 1973, after only a decade of research, the government shut Plum Brook down before many of its experiments could be completed. Even the valiant attempt to redefine the reactor as an environmental analysis tool failed, and the facility went silent. The reactors lay in costly, but quiet standby for nearly a quarter-century before the Nuclear Regulatory Commission decided to decommission the reactors and clean up the site. The history of Plum Brook reveals the perils and potentials of that nuclear technology. As NASA, Congress, and space enthusiasts all begin looking once again at the nuclear option for sending humans to Mars, the echoes of Plum Brook's past will resonate with current policy and space initiatives.

  13. Topological ferrimagnetic behaviours of coordination polymers containing manganese(II) chains with mixed azide and carboxylate bridges and alternating F/AF/AF'/AF'/AF interactions.

    PubMed

    Wang, Yan-Qin; Liu, Hou-Ting; Qi, Yan; Gao, En-Qing

    2014-08-21

    Two Mn(ii) complexes with azide and a new zwitterionic tetracarboxylate ligand 1,2,4,5-tetrakis(4-carboxylatopyridinium-1-methylene)benzene (L(1)), {[Mn5(L(1))2(N3)8(OH)2]·12H2O}n () and {[Mn5(L(1))2(N3)8(H2O)2](ClO4)2·6H2O}n (), have been synthesized and characterized crystallographically and magnetically. and contain similar alternating chains constructed by azide and carboxylate bridges. The independent sets of bridges alternate in an ABCCB sequence between adjacent Mn(ii) ions: (EO-N3)2 double bridges (EO = end-on) (denoted as A), [(EO-N3)(OCO)2] triple bridges (denoted as B) and [(EO-N3)(OCO)] double bridges (denoted as C). The alternating chains are interlinked into 2D coordination networks by the tetrapyridinium spacers. Magnetic studies demonstrate that the magnetic coupling through the double EO azide bridges is ferromagnetic and that through mixed azide/carboxylate bridges is antiferromagnetic. The unprecedented F/AF/AF'/AF'/AF coupling sequence along the chain dictates an uncompensated ground spin state (S = 5/2 per Mn5 unit) and leads to one-dimensional topological ferrimagnetism, which features a minimum in the χT versus T plot.

  14. AFS Estuaries Section - A Successful Partnership

    EPA Science Inventory

    The Estuaries Section of the American Fisheries Society offers travel awards to students in support of their attendance and presentations at the AFS meeting. Since 2007, the Southern Association of Marine Laboratories has partnered with the Estuaries Section to sponsor two stude...

  15. Complete mitochondrial genomes of paired species northern brook lamprey (Ichthyomyzon fossor) and silver lamprey (I. unicuspis).

    PubMed

    Ren, Jianfeng; Buchinger, Tyler; Pu, Jiafei; Jia, Liang; Li, Weiming

    2016-05-01

    The complete mitogenomes of paired species northern brook lamprey (Ichthyomyzon fossor) and silver lamprey (I. unicuspis) is reported. The two mitogenomes show a 13 bp length difference on the tRNA-Gly and two control regions. The gene order and contents are conserved in the two lampreys and identical to the lamprey mitogenomes published. Except for three indel polymorphic sites, there are 27 SNP sites which are all synonymous substitution sites and occurred on 9 protein-coding genes, two rRNAs and one tRNA. The control region1 contains six consecutive 39-nt repetitive strings in both lampreys. A 7-nt repetitive string in the control region2 is repeated 3 and 5 times in northern brook lamprey and silver lamprey, respectively. The observed level of similarity between nucleotide sequences (99.74%) is consistent with the hypothesis that northern brook lamprey and silver lamprey represent two ecotypes of one species.

  16. Geomorphic, flood, and groundwater-flow characteristics of Bayfield Peninsula streams, Wisconsin, and implications for brook-trout habitat

    USGS Publications Warehouse

    Fitzpatrick, Faith A.; Peppler, Marie C.; Saad, David A.; Pratt, Dennis M.; Lenz, Bernard N.

    2015-01-01

    Available brook-trout habitat is dependent on the locations of groundwater upwellings, the sizes of flood peaks, and sediment loads. Management practices that focus on reducing or slowing runoff from upland areas and increasing channel roughness have potential to reduce flood peaks, erosion, and sedimentation and improve brook-trout habitat in all Bayfield Peninsula streams.

  17. 77 FR 37707 - Draft Environmental Impact Statement on Brooks River Visitor Access for Katmai National Park and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-22

    ... document evaluates the environmental impacts of four action alternatives that include bridge and boardwalk systems to replace the existing Brooks River floating bridge and sites to relocate the existing Naknek... implemented, this EIS would amend the access provisions of the 1996 Brooks River Area Final...

  18. Effect of brook trout removal from a spawning stream on an adfluvial population of Lahontan cutthroat trout

    USGS Publications Warehouse

    Scoppettone, G. Gary; Rissler, Peter H.; Shea, Sean P.; Somer, William

    2012-01-01

    Independence Lake (Nevada and Sierra counties, California) harbors the only extant native population of Lahontan cutthroat trout Oncorhynchus clarkii henshawi in the Truckee River system and one of two extant adfluvial populations in the Lahontan basin. The persistence of this population has been precarious for more than 50 years, with spawning runs consisting of only 30–150 fish. It is assumed that this population was much larger prior to the introduction of nonnative brook trout Salvelinus fontinalis. Brook trout overlap with cutthroat trout in upper Independence Creek, where the cutthroat trout spawn and their resulting progeny emigrate to Independence Lake. In 2005, we began removing brook trout from upper Independence Creek using electrofishers and monitored the cutthroat trout population. Stomach analysis of captured brook trout revealed cutthroat trout fry, and cutthroat trout fry survival increased significantly from 4% to 12% with brook trout removal. Prior to brook trout removal, the only Lahontan cutthroat trout progeny emigrating to Independence Lake were fry; with brook trout removal, juveniles were found entering the lake. In 2010, 237 potential spawners passed a prefabricated weir upstream of Independence Lake. Although the results of this study suggest that brook trout removal from upper Independence Creek has had a positive influence on the population dynamics of Independence Lake Lahontan cutthroat trout, additional years of removal are needed to assess the ultimate effect this action will have upon the cutthroat trout population.

  19. Shale Gas Development and Brook Trout: Scaling Best Management Practices to Anticipate Cumulative Effects

    USGS Publications Warehouse

    Smith, David; Snyder, Craig D.; Hitt, Nathaniel P.; Young, John A.; Faulkner, Stephen P.

    2012-01-01

    Shale gas development may involve trade-offs between energy development and benefits provided by natural ecosystems. However, current best management practices (BMPs) focus on mitigating localized ecological degradation. We review evidence for cumulative effects of natural gas development on brook trout (Salvelinus fontinalis) and conclude that BMPs should account for potential watershed-scale effects in addition to localized influences. The challenge is to develop BMPs in the face of uncertainty in the predicted response of brook trout to landscape-scale disturbance caused by gas extraction. We propose a decision-analysis approach to formulating BMPs in the specific case of relatively undisturbed watersheds where there is consensus to maintain brook trout populations during gas development. The decision analysis was informed by existing empirical models that describe brook trout occupancy responses to landscape disturbance and set bounds on the uncertainty in the predicted responses to shale gas development. The decision analysis showed that a high efficiency of gas development (e.g., 1 well pad per square mile and 7 acres per pad) was critical to achieving a win-win solution characterized by maintaining brook trout and maximizing extraction of available gas. This finding was invariant to uncertainty in predicted response of brook trout to watershed-level disturbance. However, as the efficiency of gas development decreased, the optimal BMP depended on the predicted response, and there was considerable potential value in discriminating among predictive models through adaptive management or research. The proposed decision-analysis framework provides an opportunity to anticipate the cumulative effects of shale gas development, account for uncertainty, and inform management decisions at the appropriate spatial scales.

  20. William Keith Brooks and the naturalist's defense of Darwinism in the late-nineteenth century.

    PubMed

    Nash, Richard

    2015-06-01

    William Keith Brooks was an American zoologist at Johns Hopkins University from 1876 until his death in 1908. Over the course of his career, Brooks staunchly defended Darwinism, arguing for the centrality of natural selection in evolutionary theory at a time when alternative theories, such as neo-Lamarckism, grew prominent in American biology. In his book The Law of Heredity (1883), Brooks addressed problems raised by Darwin's theory of pangenesis. In modifying and developing Darwin's pangenesis, Brooks proposed a new theory of heredity that sought to avoid the pitfalls of Darwin's hypothesis. In so doing he strengthened Darwin's theory of natural selection by undermining arguments for the inheritance of acquired characteristics. In later attacks on neo-Lamarckism, Brooks consistently defended Darwin's theory of natural selection on logical grounds, continued to challenge the idea of the inheritance of acquired characteristics, and argued that natural selection best explained a wide range of adaptations. Finally, he critiqued Galton's statistical view of heredity and argued that Galton had resurrected an outmoded typological concept of species, one which Darwin and other naturalists had shown to be incorrect. Brooks's ideas resemble the "biological species concept" of the twentieth century, as developed by evolutionary biologist Ernst Mayr and others. The late-nineteenth century was not a period of total "eclipse" of Darwinism, as biologists and historians have hitherto seen it. Although the "Modern Synthesis" refers to the reconciliation of post-Mendelian genetics with evolution by natural selection, we might adjust our understanding of how the synthesis developed by seeing it as the culmination of a longer discussion that extends back to the late-nineteenth century.

  1. Monitoring the restoration of Red Brook, a small coastal stream in southeastern Massachusetts

    NASA Astrophysics Data System (ADS)

    Douglas, E. M.; Kichefski, S. L.; Fradkin, B.; Gontz, A. M.; Lambert, B. C.; Purinton, T. A.

    2008-12-01

    Massachusetts is putting considerable time and investment into improving regional watersheds for public safety, community use, and ecological integrity. One major aspect of this effort involves restoring rivers and streams by removing unsafe or obsolete dams and obstructions to reconnect natural and cultural river communities. Despite the importance of sediment concentrations in water quality, little has been done in Massachusetts or elsewhere to document the long term impacts of dam removal on sediment transport and its ultimate impact on the local watershed. We are monitoring the restoration of Red Brook, a 4.5 mile small, spring-fed, coastal stream which is currently on the priority projects list of the Massachusetts Riverways Program. The long-term goal of the Red Brook Restoration project is to naturalize the stream and restore its function by removing man-made flumes, eliminating sources of unnatural sedimentation, and enhancing habitat for anadromous fishes, specifically sea-run brook trout. We are using in-situ measurements, geophysical techniques and a remotely-accessed environmental sensor network to monitor flow and sediment movement in the Brook before and after the flume removal. In summer 2008, we quantified the sediment deposits that have built up behind several flumes in the Brook. Removal of the most upstream flume is currently underway and we will monitor changes in flow and sediment transport in response to this removal. Preliminary results will be presented that compare pre- and post-restoration conditions in the Brook as well as evaluate the effectiveness of various monitoring techniques.

  2. Nearshore habitat and fish community associations of coaster brook trout in Isle Royale, Lake Superior

    USGS Publications Warehouse

    Gorman, O.T.; Moore, S.A.; Carlson, A.J.; Quinlan, H.R.

    2008-01-01

    We characterized the nearshore habitat and fish community composition of approximately 300 km of shoreline within and adjacent to the major embayments of Isle Royale, Lake Superior. Sampling yielded 17 species, of which 12 were widespread and represented a common element of the Lake Superior fish community, including cisco Coregonus artedi, lake whitefish C. clupeaformis, round whitefish Prosopium cylindraceum, lake trout Salvelinus namaycush, rainbow smelt Osmerus mordax, lake chub Couesius plumbeus, longnose sucker Catostomus catostomus, white sucker C. commersonii, trout-perch Percopsis omiscomaycus, ninespine stickleback Pungitius pungitius, burbot Lota lota, and slimy sculpin Cottus cognatus. The presence of brook trout S. fontinalis in an embayment was associated with the common species of the Isle Royale nearshore fish community, particularly cisco, longnose sucker, and round whitefish. However, brook trout were present in only five embayments and were common only in Tobin Harbor. Most Isle Royale embayments had broadly overlapping ranges of nearshore habitats. Within embayments, fish were distributed along a habitat gradient from less-protected rocky habitat near the mouth to highly protected habitat with mixed and finer substrates at the head. Embayments with brook trout had greater mean protection from the open lake, greater variation in depth, greater mean cover, and higher mean frequencies of large substrates (cobble, boulder, and bedrock). Within those embayments, brook trout were associated with habitat patches with higher mean frequencies of small substrates (particularly sand and coarse gravel). Within Tobin Harbor, brook trout were associated with midembayment habitat and species assemblages, especially those locations with a mixture of sand, gravel, and cobble substrates, an absence of bedrock, and the presence of round whitefish, white sucker, and trout-perch. Comparison of embayments with the model, Tobin Harbor, showed that six embayments

  3. 2014 Earthquake Swarm in Northwest Brooks Range, Alaska

    NASA Astrophysics Data System (ADS)

    Ruppert, N. A.; Holtkamp, S. G.

    2014-12-01

    An unusual sequence of earthquakes in NW Brooks Range region of Alaska began with two magnitude 5.7 earthquakes within minutes of each other on April 18, 2014. These events were followed by a vigorous aftershock sequence with many aftershocks reaching magnitude 4 and higher. Later, three more magnitude 5.7 earthquakes occurred in the same source region on May 3, June 7 and June 16. Earthquake source mechanisms indicate normal faulting on SE-NW striking fault planes. The source region is located ~20 km NE of the Noatak village and ~40 km S of the Red Dog Mine. A magnitude 5.5 occurred in this area in 1981. The 1981 sequence also exhibited a swarm-like behavior over the course of 6 months. Detection and reporting of these earthquakes is complicated by sparseness of seismic network in NW Alaska. At the time of April 18 earthquake the nearest seismic site was located at the Red Dog Mine, with the next nearest station 350 km away. Following the May 3 event, the Alaska Earthquake Center installed two additional temporary stations, one in Noatak and another in Kotzebue, 85 km S of the source area. Overall, 450 events were reported in this sequence through end of July. The catalog magnitude of completeness with the additional stations was about ~2.2. We applied waveform template matching algorithm to detect additional events in this sequence that could not be detected with the standard network processing. The template matching resulted in ~600 additional event detections. The waveform cross-correlation indicates that most of the events are not repeating sources. From the catalogued events, only 6% of event pairs have correlation coefficients of 0.75 or higher. We were able to identify only a few families of repeating events. Only one family seemed to be present throughout the entire sequence, while other event families were mostly short-lived. We find preliminary evidence that the earthquakes migrated to shallower depths throughout the sequence, consistent with the

  4. Structure of the Red Dog District, western Brooks Range, Alaska

    USGS Publications Warehouse

    de Vera, Jean-Pierre P.; McClay, K. R.

    2004-01-01

    The Red Dog district of the western Brooks Range of northern Alaska, which includes the sediment-hosted Zn-Pb-Ag ± Ba deposits at Red Dog, Su-Lik, and Anarraaq, contains one of the world's largest reserves of zinc. This paper presents a new model for the structural development of the area and shows that understanding the structure is crucial for future exploration efforts and new mineral discoveries in the district. In the Red Dog district, a telescoped Late Devonian through Jurassic continental passive margin is exposed in a series of subhorizontally stacked, internally imbricated, and regionally folded thrust sheets. These sheets were emplaced during the Middle Jurassic to Late Cretaceous Brookian orogeny and subsequently were uplifted by late tectonic activity in the Tertiary. The thrust sheet stack comprises seven tectonostratigraphically distinct allochthonous sheets, three of which have been subject to regional and detailed structural analysis. The lowermost of these is the Endicott Mountains allochthon, which is overlain by the structurally higher Picnic Creek and Kelly River allochthons. Each individual allochthon is itself internally imbricated into a series of tectonostratigraphically coherent and distinct thrust plates and subplates. This structural style gives rise to duplex development and imbrication at a range of scales, from a few meters to tens of kilometers. The variable mechanical properties of the lithologic units of the ancient passive margin resulted in changes in structural styles and scales of structures across allochthon boundaries. Structural mapping and analysis of the district indicate a dominant northwest to west-northwest direction of regional tectonic transport. Local north to north-northeast transport of thrust sheets is interpreted to reflect the influence of underlying lateral and/or oblique ramps, which may have been controlled by inherited basin margin structures. Some thrust-sheet stacking patterns suggest out

  5. Microfluidic Pumps Containing Teflon [Trademark] AF Diaphragms

    NASA Technical Reports Server (NTRS)

    Willis, Peter; White, Victor; Grunthaner, Frank; Ikeda, Mike; Mathies, Richard A.

    2009-01-01

    Microfluidic pumps and valves based on pneumatically actuated diaphragms made of Teflon AF polymers are being developed for incorporation into laboratory-on-a-chip devices that must perform well over temperature ranges wider than those of prior diaphragm-based microfluidic pumps and valves. Other potential applications include implanted biomedical microfluidic devices, wherein the biocompatability of Teflon AF polymers would be highly advantageous. These pumps and valves have been demonstrated to function stably after cycling through temperatures from -125 to 120 C. These pumps and valves are intended to be successors to similar prior pumps and valves containing diaphragms made of polydimethylsiloxane (PDMS) [commonly known as silicone rubber]. The PDMS-containing valves ae designed to function stably only within the temperature range from 5 to 80 C. Undesirably, PDMS membranes are somwehat porous and retain water. PDMS is especially unsuitable for use at temperatures below 0 C because the formation of ice crystals increases porosity and introduces microshear.

  6. Temperature and competition between bull trout and brook trout: A test of the elevation refuge hypothesis.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We tested the elevation refuge hypothesis that colder water temperatures impart a competitive advantage to bull trout Salvelinus confluentus and thus account for increased biotic resistance to invasion and displacement by brook trout S. fontinalis in headwater streams. Growth, survival, and behavio...

  7. Modeling ecohydrologic processes at Hubbard Brook: Initial results for Watershed 6 stream discharge and chemistry

    EPA Science Inventory

    The Hubbard Brook Long Term Ecological Research site has produced some of the most extensive and long-running databases on the hydrology, biology and chemistry of forest ecosystem responses to climate and forest harvest. We used these long-term databases to calibrate and apply G...

  8. 75 FR 38716 - Safety Zone; Vietnam Veterans of America Fireworks Display, Brookings, OR

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-06

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Vietnam Veterans of America Fireworks... Veterans of America Fireworks Display near Brookings, Oregon. This action is necessary to ensure the safety... with fireworks displays on navigable waters. Accordingly, under 5 U.S.C. 553(b)(B), the Coast...

  9. Decontamination of Hot Cells and Hot Pipe Tunnel at NASA's Plum Brook Reactor Facility

    SciTech Connect

    Anderson, M.G.; Halishak, W.F.

    2008-07-01

    The large scale decontamination of the concrete Hot Cells and Hot Pipe Tunnel at NASA's Plum Brook Reactor Facility demonstrates that novel management and innovative methods are crucial to ensuring that the successful remediation of the most contaminated facilities can be achieved with minimal risk to the project stakeholders. (authors)

  10. IMPACTS OF MARINE AEROSOLS ON SURFACE WATER CHEMISTRY AT BEAR BROOK WATERSHED, MAINE USA

    EPA Science Inventory

    The East Bear catchment at Bear Brook Watershed, Maine receives moderate (for the eastern U.S.) amounts of Cl- in wet and dry deposition. In 1989, Cl- in precipitation ranged from 2 to 55 eq/L. Dry, occult, and wet deposition plus evapotranspiration resulted in stream Cl- averagi...

  11. The Spine of Literature: A Conversation between Eudora Welty and Cleanth Brooks.

    ERIC Educational Resources Information Center

    Taylor, Caroline

    1988-01-01

    Describes a discussion between Cleanth Brooks and Eudora Welty about the state of the story in today's fiction. Characterizes the narrative form as the spine of literature. Points out that, too often, contemporary writers neglect this form of writing and instead emphasize a type of prose poetry. Notes that authors today overemphasize the present…

  12. Brook trout nutritional analysis for inclusion into the USDA National Nutrient Database for Standard Reference

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many species of wild game and fish that are legal to hunt or catch do not have nutrition information in the USDA National Nutrient Database for Standard Reference (SR). Among those species that lack nutrition information are brook trout. The research team worked with the Nutrient Data Laboratory wit...

  13. William Graham Brooke (1835-1907): Advocate of Girls' Superior Schooling in Nineteenth-Century Ireland

    ERIC Educational Resources Information Center

    McCormack, Christopher F.

    2015-01-01

    This paper examines the role of William Graham Brooke as advocate of women's higher education and access to university. His work as advocate is considered against the religious, political, social and economic backdrop of late nineteenth century Ireland. A barrister, as Clerk in the Lord Chancellor's office, he was centrally involved in the…

  14. Distribution of volatile organic compounds in sediments near Sutton Brook Disposal Area, Tewksbury, Massachusetts, May 2001

    USGS Publications Warehouse

    Church, P.E.; Lyford, F.P.; Clifford, Scott

    2002-01-01

    Ground water at the Sutton Brook Disposal Area, a former municipal landfill in Tewksbury, Massachusetts, located adjacent to Sutton Brook, a tributary of the Shawsheen River, is contaminated by volatile organic compounds (VOCs). Results from the use of passive-vapor-diffusion samplers show vapor concentrations of petroleum hydrocarbons as high as 500,000 parts per billion by volume in pore waters of streambed sediments along an approximate 2,000-foot reach of Sutton Brook where it flows between lobes of the former landfill. Petroleum hydrocarbons were also detected in the sediments on the eastern shore of Quarry Pond, which is south of the southern landfill lobe, with a maximum vapor concentration near 2,000 parts per billion by volume. Vapor concentrations of petroleum hydrocarbons in the sediments of Sutton Brook vary by two to three orders-of-magitude over distances of 50 to 100 feet. Chlorinated hydrocarbons also were detected with passive-vapor-diffusion samplers, but generally at locations downstream of where petroleum hydrocarbons were detected, and mostly at vapor concentrations of less than 100 parts per billion by volume.

  15. EXPERIMENTAL ACIDIFICATION CAUSES SOIL BASE-CATION DEPLETION AT THE BEAR BROOK WATERSHED IN MAINE

    EPA Science Inventory

    There is concern that changes in atmospheric deposition, climate, or land use have altered the biogeochemistry of forests causing soil base-cation depletion, particularly Ca. The Bear Brook Watershed in Maine (BBWM) is a paired watershed experiment with one watershed subjected to...

  16. EFFECTS OF PHOTOPERIOD MANIPULATION ON BROOK TROUT REPRODUCTIVE DEVELOPMENT, FECUNDITY, AND CIRCULATING SEX STEROID CONCENTRATIONS

    EPA Science Inventory

    The goal of this study was to determine the feasibility of conducting reproductive studies with brook trout Salvelinus fontinalis at times other than the normal fall-spawning period...Overall viability of embryos from this spring spawning was slightly lower than the average viabi...

  17. MLL-AF6 fusion oncogene sequesters AF6 into the nucleus to trigger RAS activation in myeloid leukemia.

    PubMed

    Manara, Elena; Baron, Emma; Tregnago, Claudia; Aveic, Sanja; Bisio, Valeria; Bresolin, Silvia; Masetti, Riccardo; Locatelli, Franco; Basso, Giuseppe; Pigazzi, Martina

    2014-07-10

    A rare location, t(6;11)(q27;q23) (MLL-AF6), is associated with poor outcome in childhood acute myeloid leukemia (AML). The described mechanism by which MLL-AF6, through constitutive self-association and in cooperation with DOT-1L, activates aberrant gene expression does not explain the biological differences existing between t(6;11)-rearranged and other MLL-positive patients nor their different clinical outcome. Here, we show that AF6 is expressed in the cytoplasm of healthy bone marrow cells and controls rat sarcoma viral oncogene (RAS)-guanosine triphosphate (GTP) levels. By contrast, in MLL-AF6-rearranged cells, AF6 is found localized in the nucleus, leading to aberrant activation of RAS and of its downstream targets. Silencing MLL-AF6, we restored AF6 localization in the cytoplasm, thus mediating significant reduction of RAS-GTP levels and of cell clonogenic potential. The rescue of RAS-GTP levels after MLL-AF6 and AF6 co-silencing confirmed that MLL-AF6 oncoprotein potentiates the activity of the RAS pathway through retention of AF6 within the nucleus. Exposure of MLL-AF6-rearranged AML blasts to tipifarnib, a RAS inhibitor, leads to cell autophagy and apoptosis, thus supporting RAS targeting as a novel potential therapeutic strategy in patients carrying t(6;11). Altogether, these data point to a novel role of the MLL-AF6 chimera and show that its gene partner, AF6, is crucial in AML development.

  18. AfsR recruits RNA polymerase to the afsS promoter: a model for transcriptional activation by SARPs.

    PubMed

    Tanaka, Akiko; Takano, Yuji; Ohnishi, Yasuo; Horinouchi, Sueharu

    2007-06-01

    AfsR, a protein belonging to the Streptomyces antibiotic regulatory protein (SARP) family, is a global regulator of secondary metabolism in Streptomyces coelicolor A3(2). AfsR consists of three major functional domains: an N-terminal SARP domain, a central ATPase domain, and a C-terminal tetratrico peptide repeat (TPR) domain. Two truncated AfsR proteins, AfsRDeltaTPR containing the SARP and ATPase domains and AfsRDeltaC containing only the SARP domain, exhibited the same DNA-binding specificity as that of full-length AfsR. Two monomers bound cooperatively to a direct repeat located eight nucleotides 5' to the -10 element of the afsS promoter. Both truncated AfsR proteins, as well as full-length AfsR, were able to form ternary complexes with the afsS promoter and RNA polymerase (RNAP), although RNAP alone could not bind to the DNA. The DNA-(AfsRDeltaC)(2)-RNAP complex was capable of initiating afsS transcription in vitro, indicating that the ATPase and TPR domains are dispensable for the basic function of AfsR as a transcriptional activator. However, the ATPase domain was required to fully compensate for the defect in actinorhodin production in an afsR-disrupted mutant, suggesting that the ATPase domain exerts a regulatory function on the basic SARP domain. Deletion or addition of even a single nucleotide between the AfsR-binding site and the -10 element of the afsS promoter abolished afsS transcription both in vitro and in vivo, indicating that the recruitment of RNAP by AfsR to the correct location relative to the -10 element is critical for transcriptional activation. Since SARP-binding sites with similar direct repeats are located at the same position relative to the -10 element of their target promoters as is the afsS binding site, the SARP family members presumably activate transcription of their targets by recruiting RNAP to the promoter, where a ternary DNA-SARP-RNAP complex competent for transcriptional initiation is formed.

  19. Biological consequences of the coaster brook trout restoration stocking program in Lake Superior tributaries with Pictured Rocks National Lakeshore

    USGS Publications Warehouse

    Leonard, Jill B.K.; Stott, Wendylee; Loope, Delora M.; Kusnierz, Paul C.; Sreenivasan, Ashwin

    2013-01-01

    The coaster Brook Trout Salvelinus fontinalis is a Lake Superior ecotype representing intraspecific variation that has been impacted by habitat loss and overfishing. Hatchery strains of Brook Trout derived from populations in Lake Superior were stocked into streams within Pictured Rocks National Lakeshore, Michigan, as part of an effort to rehabilitate adfluvial coaster Brook Trout. Wild and hatchery Brook Trout from three streams (Mosquito River, Hurricane River, and Sevenmile Creek) were examined for movement behavior, size, physiology, and reproductive success. Behavior and size of the stocked fish were similar to those of wild fish, and less than 15% of the stocked, tagged Brook Trout emigrated from the river into which they were stocked. There was little evidence of successful reproduction by stocked Brook Trout. Similar to the results of other studies, our findings suggest that the stocking of nonlocal Brook Trout strains where a local population already exists results in limited natural reproduction and should be avoided, particularly if the mechanisms governing the ecotype of interest are poorly understood.

  20. Influence of landscape-scale factors in limiting brook trout populations in Pennsylvania streams

    USGS Publications Warehouse

    Kocovsky, P.M.; Carline, R.F.

    2006-01-01

    Landscapes influence the capacity of streams to produce trout through their effect on water chemistry and other factors at the reach scale. Trout abundance also fluctuates over time; thus, to thoroughly understand how spatial factors at landscape scales affect trout populations, one must assess the changes in populations over time to provide a context for interpreting the importance of spatial factors. We used data from the Pennsylvania Fish and Boat Commission's fisheries management database to investigate spatial factors that affect the capacity of streams to support brook trout Salvelinus fontinalis and to provide models useful for their management. We assessed the relative importance of spatial and temporal variation by calculating variance components and comparing relative standard errors for spatial and temporal variation. We used binary logistic regression to predict the presence of harvestable-length brook trout and multiple linear regression to assess the mechanistic links between landscapes and trout populations and to predict population density. The variance in trout density among streams was equal to or greater than the temporal variation for several streams, indicating that differences among sites affect population density. Logistic regression models correctly predicted the absence of harvestable-length brook trout in 60% of validation samples. The r 2-value for the linear regression model predicting density was 0.3, indicating low predictive ability. Both logistic and linear regression models supported buffering capacity against acid episodes as an important mechanistic link between landscapes and trout populations. Although our models fail to predict trout densities precisely, their success at elucidating the mechanistic links between landscapes and trout populations, in concert with the importance of spatial variation, increases our understanding of factors affecting brook trout abundance and will help managers and private groups to protect and

  1. A comparative and experimental evaluation of performance of stocked diploid and triploid brook trout

    USGS Publications Warehouse

    Budy, Phaedra E.; Thiede, G.P.; Dean, A.; Olsen, D.; Rowley, G.

    2012-01-01

    Despite numerous negative impacts, nonnative trout are still being stocked to provide economically and socially valuable sport fisheries in western mountain lakes. We evaluated relative performance and potential differences in feeding strategy and competitive ability of triploid versus diploid brook trout Salvelinus fontinalis in alpine lakes, as well as behavioral and performance differences of diploid and triploid brook trout in two controlled experimental settings: behavioral experiments in the laboratory and performance evaluations in ponds. Across lakes, catch per unit effort (CPUE) and relative weight (Wr ) were not significantly different between ploidy levels. Mean sizes were also similar between ploidy levels except in two of the larger lakes where diploids attained slightly larger sizes (approximately 20 mm longer). We observed no significant differences between diploids and triploids in diet, diet preference, or trophic structure. Similarly, growth and condition did not differ between ploidy levels in smaller-scale pond experiments, and aggressive behavior did not differ between ploidy levels (fed or unfed fish trials) in the laboratory. Independent of ploidy level, the relative performance of brook trout varied widely among lakes, a pattern that appeared to be a function of lake size or a factor that covaries with lake size such as temperature regime or carrying capacity. In summary, we observed no significant differences in the relative performance of brook trout from either ploidy level across a number of indices, systems, and environmental conditions, nor any indication that one group is more aggressive or a superior competitor than the other. Collectively, these results suggest that triploid brook trout will offer a more risk-averse and promising management opportunity when they are stocked to these lakes and elsewhere to simultaneously meet the needs for the sport fishery and conservation objectives.

  2. Brook trout movement in response to temperature, flow, and thermal refugia within a complex Appalachian riverscape

    USGS Publications Warehouse

    Petty, J. Todd; Hansbarger, Jeff L.; Huntsman, Brock M.; Mazik, Patricia M.

    2012-01-01

    We quantified movements of brook trout Salvelinus fontinalis and brown trout Salmo trutta in a complex riverscape characterized by a large, open-canopy main stem and a small, closed-canopy tributary in eastern West Virginia, USA. Our objectives were to quantify the overall rate of trout movement and relate movement behaviors to variation in streamflow, water temperature, and access to coldwater refugia. The study area experienced extremely high seasonal, yearly, and among-stream variability in water temperature and flow. The relative mobility of brook trout within the upper Shavers Fork watershed varied significantly depending on whether individuals resided within the larger main stem or the smaller tributary. The movement rate of trout inhabiting the main stem during summer months (50 m/d) was an order of magnitude higher than that of tributary fish (2 m/d). Movement rates of main-stem-resident brook trout during summer were correlated with the maximum water temperature experienced by the fish and with the fish's initial distance from a known coldwater source. For main-stem trout, use of microhabitats closer to cover was higher during extremely warm periods than during cooler periods; use of microhabitats closer to cover during warm periods was also greater for main-stem trout than for tributary inhabitants. Main-stem-resident trout were never observed in water exceeding 19.5°C. Our study provides some of the first data on brook trout movements in a large Appalachian river system and underscores the importance of managing trout fisheries in a riverscape context. Brook trout conservation in this region will depend on restoration and protection of coldwater refugia in larger river main stems as well as removal of barriers to trout movement near tributary and main-stem confluences.

  3. Role of soil freezing events in interannual patterns of stream chemistry at the Hubbard Brook Experimental Forest, New Hampshire.

    PubMed

    Fitzhugh, Ross D; Likens, Gene E; Driscoll, Charles T; Mitchell, Myron J; Groffman, Peter M; Fahey, Timothy J; Hardy, Janet P

    2003-04-15

    Soil freezing is a disturbance of the below ground environment, potentially resulting in increased losses of NO3- and surface water acidification. Here, we report the effects of soil freezing on interannual variation in stream chemistry at the Hubbard Brook Experimental Forest, New Hampshire. Data from 1970 to 1997 of soil frost depth, snow cover, precipitation, air temperature, and stream discharge and chemistry were used in a stepwise linear regression model to select the variables that best predicted deviations of annual stream concentrations from 4-year running averages. Variables quantifying soil freezing severity were selected as significant predictors of short-term fluctuations in stream K+, NO3-, Ca2+, and Mg2+ concentrations from 1970 to 1989, explaining 59 and 47% of the short-term variability in K+ and NO3-, respectively. Fine-root mortality and disturbance of root-soil-microbe interactions, with subsequent effects on decomposition and nutrient uptake, likely contributed to the mobilization of K+ and NO3- to streamwater following severe soil freezing events. The relationship between soil freezing and stream chemistry, however, weakened during the period 1990-1997. Because soil freezing has had inconsistent effects on stream chemistry during the period 1970-1997, it is unclear whether future changes in the frequency, duration, and depth of soil freezing events as the result of changes in the snow cover regime under a warmer climate will have significant impacts on the losses of NO3- and nutrient-base cations from temperate northern ecosystems.

  4. [Progress in Teflon AF LWCC/LCW applications].

    PubMed

    Sun, Zhao-Hua; Zhou, Wen; Xu, Zhan-Tang; Ye, Hai-Bin; Yang, Chao-Yu; Lin, Jun-Fang; Hu, Shui-Bo; Yang, Yue-Zhong; Li, Cai; Cao, Wen-Xi

    2011-11-01

    Teflon AF is chemically very inert, quite physically and optically stable, a highly vapor-permeable polymer with optical transparency through much of the UV-Vis region and with an RI lower than that of water, so Teflon AF LWCC/LCW (Long path-length liquid waveguide capillary cell/liquid core waveguides) has been used with a range of different detection techniques, including absorbance spectroscopy, fluorescence spectroscopy, Raman spectroscopy, and gas sensor. The present article describes the properties and the aspects of Teflon AF LWCC/LCW instrumentation and applications. And finally,the future prospect and outlook of Teflon AF LWCC/LCW is also discussed.

  5. Ontogenetic and diel variation in stream habitat use by brook trout (Salvelinus fontinalis) in a headwater stream

    USGS Publications Warehouse

    Johnson, J.H.; Ross, R.M.; Dropkin, D.S.; Redell, L.A.

    2011-01-01

    Although considerable information exists on habitat use by stream salmonids, only a small portion has quantitatively examined diurnal and nocturnal habitat variation. We examined diel variation in habitat use by age-0 and age-1+ brook trout (Salvelinus fontinalis) during summer and autumn in a headwater stream in northern Pennsylvania. Habitat variables measured included cover, depth, substrate, and velocity. The most pronounced diel variation occurred in the use of cover during both seasons. Both age-0 brook trout and age-1+ trout were associated with less cover at night. Age-0 brook trout occupied swifter water during the day than at night during both seasons, but the difference was not significant. Increased cover, depth, and substrate size governed the habitat of age-1+ brook trout. Our findings support the need for a better understanding of diel differences in habitat use of stream salmonids when considering habitat enhancement and protection.

  6. Geomorphic, flood, and groundwater-flow characteristics of Bayfield Peninsula streams, Wisconsin, and implications for brook-trout habitat

    USGS Publications Warehouse

    Fitzpatrick, Faith A.; Peppler, Marie C.; Saad, David A.; Pratt, Dennis M.; Lenz, Bernard N.

    2015-01-01

    Available brook-trout habitat is dependent on the locations of groundwater upwellings, the sizes of flood peaks, and sediment loads. Management practices that focus on reducing or slowing runoff from upland areas a

  7. Modeling potential hydrochemical responses to climate change and increasing CO2 at the Hubbard Brook Experimental Forest using a dynamic biogeochemical model (PnET-BGC)

    NASA Astrophysics Data System (ADS)

    Pourmokhtarian, Afshin; Driscoll, Charles T.; Campbell, John L.; Hayhoe, Katharine

    2012-07-01

    Dynamic hydrochemical models are useful tools for understanding and predicting the interactive effects of climate change, atmospheric CO2, and atmospheric deposition on the hydrology and water quality of forested watersheds. We used the biogeochemical model, PnET-BGC, to evaluate the effects of potential future changes in temperature, precipitation, solar radiation, and atmospheric CO2on pools, concentrations, and fluxes of major elements at the Hubbard Brook Experimental Forest in New Hampshire, United States. Future climate projections used to run PnET-BGC were generated specifically for the Hubbard Brook Experimental Forest with a statistical technique that downscales climate output (e.g., air temperature, precipitation, solar radiation) from atmosphere-ocean general circulation models (AOGCMs) to a finer temporal and spatial resolution. These climate projections indicate that over the twenty-first century, average air temperature will increase at the site by 1.7°C to 6.5°C with simultaneous increases in annual average precipitation ranging from 4 to 32 cm above the long-term mean (1970-2000). PnET-BGC simulations under future climate change show a shift in hydrology characterized by later snowpack development, earlier spring discharge (snowmelt), greater evapotranspiration, and a slight increase in annual water yield (associated with CO2 effects on vegetation). Model results indicate that under elevated temperature, net soil nitrogen mineralization and nitrification markedly increase, resulting in acidification of soil and stream water, thereby altering the quality of water draining from forested watersheds. Invoking a CO2 fertilization effect on vegetation under climate change substantially mitigates watershed nitrogen loss, highlighting the need for a more thorough understanding of CO2 effects on forest vegetation.

  8. Delineation of Areas Contributing Water to the Dry Brook Public-Supply Well, South Hadley, Massachusetts

    USGS Publications Warehouse

    Garabedian, Stephen P.; Stone, Janet Radway

    2004-01-01

    Areas contributing water to the Dry Brook public-supply well in South Hadley, Massachusetts, were delineated with a numerical ground-water-flow model that is based on geologic and hydrologic information for the confined sand and gravel aquifer pumped by the supply well. The study area is along the Connecticut River in central Massachusetts, about 12 miles north of Springfield, Massachusetts. Geologic units in the study area consist of Mesozoic-aged sedimentary and igneous bedrock, late-Pleistocene glaciolacustrine sediments, and recent alluvial deposits of the Connecticut River flood plain. Dry Brook Hill, immediately south of the supply well, is a large subaqueous lacustrine fan and delta formed during the last glacial retreat by sediment deposition into glacial Lake Hitchcock from a meltwater tunnel that was likely near where the Connecticut River cuts through the Holyoke Range. The sediments that compose the aquifer grade from very coarse sand and gravel along the northern flank of the hill, to medium sands in the body of the hill, and to finer-grained sediments along the southern flank of the hill. The interbedded and overlapping fine-grained lacustrine sediments associated with Dry Brook Hill include varved silt and clay deposits. These fine-grained sediments form a confining bed above the coarse-grained aquifer at the supply well and partially extend under the Connecticut River adjacent to the supply well. Ground-water flow in the aquifer supplying water to Dry Brook well was simulated with the U.S. Geological Survey ground-water-flow modeling code MODFLOW. The Dry Brook aquifer model was calibrated to drawdown data collected from 8 observation wells during an aquifer test conducted by pumping the supply well for 10 days at a rate of 122.2 cubic feet per minute (ft3/min; 914 gallons per minute) and to water levels collected from observation wells across the study area. Generally, the largest hydraulic conductivity values used in the model were in the sand and

  9. Influence of species, size and relative abundance on the outcomes of competitive interactions between brook trout and juvenile coho salmon

    USGS Publications Warehouse

    Thornton, Emily J; Duda, Jeff; Quinn, Thomas P

    2016-01-01

    Resource competition between animals is influenced by a number of factors including the species, size and relative abundance of competing individuals. Stream-dwelling animals often experience variably available food resources, and some employ territorial behaviors to increase their access to food. We investigated the factors that affect dominance between resident, non-native brook trout and recolonizing juvenile coho salmon in the Elwha River, WA, USA, to see if brook trout are likely to disrupt coho salmon recolonization via interference competition. During dyadic laboratory feeding trials, we hypothesized that fish size, not species, would determine which individuals consumed the most food items, and that species would have no effect. We found that species, not size, played a significant role in dominance; coho salmon won 95% of trials, even when only 52% the length of their brook trout competitors. As the pairs of competing fish spent more time together during a trial sequence, coho salmon began to consume more food, and brook trout began to lose more, suggesting that the results of early trials influenced fish performance later. In group trials, we hypothesized that group composition and species would not influence fish foraging success. In single species groups, coho salmon consumed more than brook trout, but the ranges overlapped. Brook trout consumption remained constant through all treatments, but coho salmon consumed more food in treatments with fewer coho salmon, suggesting that coho salmon experienced more intra- than inter-specific competition and that brook trout do not pose a substantial challenge. Based on our results, we think it is unlikely that competition from brook trout will disrupt Elwha River recolonization by coho salmon.

  10. AF4 and AF4N protein complexes: recruitment of P-TEFb kinase, their interactome and potential functions

    PubMed Central

    Scholz, Bastian; Kowarz, Eric; Rössler, Tanja; Ahmad, Khalil; Steinhilber, Dieter; Marschalek, Rolf

    2015-01-01

    AF4/AFF1 and AF5/AFF4 are the molecular backbone to assemble “super-elongation complexes” (SECs) that have two main functions: (1) control of transcriptional elongation by recruiting the positive transcription elongation factor b (P-TEFb = CyclinT1/CDK9) that is usually stored in inhibitory 7SK RNPs; (2) binding of different histone methyltransferases, like DOT1L, NSD1 and CARM1. This way, transcribed genes obtain specific histone signatures (e.g. H3K79me2/3, H3K36me2) to generate a transcriptional memory system. Here we addressed several questions: how is P-TEFb recruited into SEC, how is the AF4 interactome composed, and what is the function of the naturally occuring AF4N protein variant which exhibits only the first 360 amino acids of the AF4 full-length protein. Noteworthy, shorter protein variants are a specific feature of all AFF protein family members. Here, we demonstrate that full-length AF4 and AF4N are both catalyzing the transition of P-TEFb from 7SK RNP to their N-terminal domain. We have also mapped the protein-protein interaction network within both complexes. In addition, we have first evidence that the AF4N protein also recruits TFIIH and the tumor suppressor MEN1. This indicate that AF4N may have additional functions in transcriptional initiation and in MEN1-dependend transcriptional processes. PMID:26171280

  11. AF-MSCs fate can be regulated by culture conditions

    PubMed Central

    Zagoura, D S; Trohatou, O; Bitsika, V; Makridakis, M; Pappa, K I; Vlahou, A; Roubelakis, M G; Anagnou, N P

    2013-01-01

    Human mesenchymal stem cells (hMSCs) represent a population of multipotent adherent cells able to differentiate into many lineages. In our previous studies, we isolated and expanded fetal MSCs from second-trimester amniotic fluid (AF) and characterized them based on their phenotype, pluripotency and proteomic profile. In the present study, we investigated the plasticity of these cells based on their differentiation, dedifferentiation and transdifferentiation potential in vitro. To this end, adipocyte-like cells (AL cells) derived from AF-MSCs can regain, under certain culture conditions, a more primitive phenotype through the process of dedifferentiation. Dedifferentiated AL cells derived from AF-MSCs (DAF-MSCs), gradually lost the expression of adipogenic markers and obtained similar morphology and differentiation potential to AF-MSCs, together with regaining the pluripotency marker expression. Moreover, a comparative proteomic analysis of AF-MSCs, AL cells and DAF-MSCs revealed 31 differentially expressed proteins among the three cell populations. Proteins, such as vimentin, galectin-1 and prohibitin that have a significant role in stem cell regulatory mechanisms, were expressed in higher levels in AF-MSCs and DAF-MSCs compared with AL cells. We next investigated whether AL cells could transdifferentiate into hepatocyte-like cells (HL cells) directly or through a dedifferentiation step. AL cells were cultured in hepatogenic medium and 4 days later they obtained a phenotype similar to AF-MSCs, and were termed as transdifferentiated AF-MSCs (TRAF-MSCs). This finding, together with the increase in pluripotency marker expression, indicated the adaption of a more primitive phenotype before transdifferentiation. Additionally, we observed that AF-, DAF- and TRAF-MSCs displayed similar clonogenic potential, secretome and proteome profile. Considering the easy access to this fetal cell source, the plasticity of AF-MSCs and their potential to dedifferentiate and

  12. Isolation and cross-familial amplification of 41 microsatellites for the brook charr (Salvelinus fontinalis)

    USGS Publications Warehouse

    Perry, G.M.L.; King, T.L.; St. -Cyr, J.; Valcourt, M.; Bernatchez, L.

    2005-01-01

    The brook charr (Salvelinus fontinalis; Osteichthyes: Salmonidae) is a phenotypically diverse fish species inhabiting much of North America. But relatively few genetic diagnostic resources are available for this fish species. We isolated 41 microsatellites from S. fontinalis polymorphic in one or more species of salmonid fish. Thirty-seven were polymorphic in brook charr, 15 in the congener Arctic charr (Salvelinus alpinus) and 14 in the lake charr (Salvelinus namaycush). Polymorphism was also relatively high in Oncorhynchus, where 21 loci were polymorphic in rainbow trout (Oncorhynchus mykiss) and 16 in cutthroat trout (Oncorhynchus clarkii) but only seven and four microsatellite loci were polymorphic in the more distantly related lake whitefish (Coregonus clupeaformis) and Atlantic salmon (Salmo salar), respectively. One duplicated locus (Sfo228Lav) was polymorphic at both duplicates in S. fontinalis. ?? 2005 Blackwell Publishing Ltd.

  13. Stratigraphy, structure, and palinspastic synthesis of the western Brooks Range, northwestern Alaska

    USGS Publications Warehouse

    Mayfield, Charles F.; Tailleur, Irvin L.; Ellersieck, Inyo

    1983-01-01

    This report is an effort to describe and decipher the mid-Paleozoic to Lower Cretaceous stratigraphy and the orogenic evolution of the western Brooks Range. The western Brooks Range primarily is composed of stacks of complexly deformed thrust sheets that contain mostly coeval sequences of rocks with slightly different lithologic facies. In order to simplify the thrust-faulted stratigraphy and palinspastic restoration, the rocks are grouped into eight principal structural levels. The lowest structural level is believed to be autochthonous or parautochthonous and above that, each succeeding level is designated allochthon one through seven. Allochthon seven is composed of the remnants of an extensive ophiolite sheet. Allochthon six is composed of pillow basalt with subordinate intermediate volcanic rocks, chert, and Devonian limestone. It is not certain whether this allochthon was formed in a continental or oceanic setting. Allochthons five through one consist of distinctive and coeval sequences of Devonian to Lower Cretaceous sedimentary rocks that were deposited in a continental setting. The present geographic distribution of each structural level is shown on the allochthon map of the western Brooks Range. The stratigraphy of the southern part of northern Alaska has been reconstructed by systematically unstacking lower allochthons to the north of higher allochthons. The palinspastic map that results from this procedure shows that the minimum thrust displacement between allochthon seven and the autochthon is approximately 700 to 800 km. Schematic cross sections drawn across the palinspastic map show how the stratigraphy of the southern part of northern. Alaska most likely appeared prior to the orogeny. During Devonian and Mississippian time, the sedimentary sequences that are now part of allochthons one to five are inferred to have been deposited in an ensialic basin with both northern and southern margins. During Pennsylvanian time, the sequences seem to have become

  14. More than a corridor: use of a main stem stream as supplemental foraging habitat by a brook trout metapopulation.

    PubMed

    Huntsman, Brock M; Petty, J Todd; Sharma, Shikha; Merriam, Eric R

    2016-10-01

    Coldwater fishes in streams, such as brook trout (Salvelinus fontinalis), typically are headwater specialists that occasionally expand distributions downstream to larger water bodies. It is unclear, however, whether larger streams function simply as dispersal corridors connecting headwater subpopulations, or as critical foraging habitat needed to sustain large mobile brook trout. Stable isotopes (δ(13)C and δ(15)N) and a hierarchical Bayesian mixing model analysis was used to identify brook trout that foraged in main stem versus headwater streams of the Shavers Fork watershed, West Virginia. Headwater subpopulations were composed of headwater and to a lesser extent main stem foraging individuals. However, there was a strong relationship between brook trout size and main stem prey contributions. The average brook trout foraging on headwater prey were limited to 126 mm standard length. This size was identified by mixing models as a point where productivity support switched from headwater to main stem dependency. These results, similar to other studies conducted in this watershed, support the hypothesis that productive main stem habitat maintain large brook trout and potentially facilitates dispersal among headwater subpopulations. Consequently, loss of supplementary main stem foraging habitats may explain loss of large, mobile fish and subsequent isolation of headwater subpopulations in other central Appalachian watersheds.

  15. Kinematics of the mosquito terrane, Coldfoot Area, Alaska: Keys to Brooks Range tectonics: Final report, Project No. 2

    SciTech Connect

    Harms, T.A.; Coney, P.J.

    1988-04-01

    Within the large-scale geometry of the Brooks Range, the Angayucham terrane occurs as a vast overthrust sheet. From the north flank of the Ruby terrane it underlies the Koyukuk basin and stretches north as the roof thrust to the various nappe terranes of the Brooks Range. The tectonic relationship of the Ruby terrane to the south flank of the Brooks Range lies largely obscured beneath the Angayucham in the eastern apex of the Koyukuk basin. The Mosquito terrane occurs as a window through the Angayucham at this juncture. The composition and structures of the Mosquito terrane reveal that is the result of shear along a sub-horizontal step or flange within the prominent, through-going dextral strike-slip fault system which cuts across the eastern Koyukuk basin and southeastern Brooks Range. Units of the Mosquito were derived from both the Angayucham and Ruby terranes. A consistent tectonic fabric imposed upon them is kinematically linked to the strike-slip system and indicates a northeasterly direction of transport across the terrane. The presence of Ruby-correlative units within the Mosquito suggests the Ruby underlies the Angayucham and that it is in contact with terrances of the southern Brooks Range at that structural level along high-angle strike-slip faults. These relationships demonstrate that an episode of dextral transpression is the latest in the history of terrane accretion and tectonic evolution of the Brooks Range. 35 refs.

  16. More than a corridor: use of a main stem stream as supplemental foraging habitat by a brook trout metapopulation.

    PubMed

    Huntsman, Brock M; Petty, J Todd; Sharma, Shikha; Merriam, Eric R

    2016-10-01

    Coldwater fishes in streams, such as brook trout (Salvelinus fontinalis), typically are headwater specialists that occasionally expand distributions downstream to larger water bodies. It is unclear, however, whether larger streams function simply as dispersal corridors connecting headwater subpopulations, or as critical foraging habitat needed to sustain large mobile brook trout. Stable isotopes (δ(13)C and δ(15)N) and a hierarchical Bayesian mixing model analysis was used to identify brook trout that foraged in main stem versus headwater streams of the Shavers Fork watershed, West Virginia. Headwater subpopulations were composed of headwater and to a lesser extent main stem foraging individuals. However, there was a strong relationship between brook trout size and main stem prey contributions. The average brook trout foraging on headwater prey were limited to 126 mm standard length. This size was identified by mixing models as a point where productivity support switched from headwater to main stem dependency. These results, similar to other studies conducted in this watershed, support the hypothesis that productive main stem habitat maintain large brook trout and potentially facilitates dispersal among headwater subpopulations. Consequently, loss of supplementary main stem foraging habitats may explain loss of large, mobile fish and subsequent isolation of headwater subpopulations in other central Appalachian watersheds. PMID:27334869

  17. Exploring the potential of life-history key innovation: brook breeding in the radiation of the Malagasy treefrog genus Boophis.

    PubMed

    Vences, M; Andreone, F; Glaw, F; Kosuch, J; Meyer, A; Schaefer, H-C; Veith, M

    2002-08-01

    The treefrog genus Boophis is one of the most species-rich endemic amphibian groups of Madagascar. It consists of species specialized to breeding in brooks (48 species) and ponds (10 species). We reconstructed the phylogeny of Boophis using 16S ribosomal DNA sequences (558 bp) from 27 species. Brook-breeders were monophyletic and probably derived from an ancestral pond-breeding lineage. Pond-breeders were paraphyletic. The disparity in diversification among pond-breeders and brook-breeders was notable among endemic Malagasy frogs, although it was not significant when considering Boophis alone. Sibling species which have different advertisement calls but are virtually indistinguishable by morphology were common among brook-breeders; genetic divergence between these species was high (modal 8% total pairwise divergence). Substitution rates in brook-breeding species were significantly higher than in pond-breeders. Speciation of pond-breeders may be hindered by their usually more synchronous reproduction and a higher vagility which enhances gene flow, while a higher potential of spatial segregation and speciation may exist along brooks.

  18. X-linked mental retardation syndrome: Three brothers with the Brooks-Wisniewski-Brown syndrome

    SciTech Connect

    Morava, E.; Storcz, J.; Kosztolanyi, G.

    1996-07-12

    We report on 3 brothers with growth and mental retardation, bifrontal narrowness, short palpebral fissures, deeply set eyes with entropion, wide bulbous nose, small mouth, myopia, and spastic diplegia. The patients were born to normal and non-consanguineous parents. The similarity of our cases with those recently reported by Brooks et al. supports their suggestion that these patients are representative of a distinct entity. 8 refs., 3 figs., 1 tab.

  19. Preparation and Reactivity of Acyclic Chiral Allylzinc Species by a Zinc-Brook Rearrangement.

    PubMed

    Leibeling, Markus; Shurrush, Khriesto A; Werner, Veronika; Perrin, Lionel; Marek, Ilan

    2016-05-10

    The zinc-Brook rearrangement of enantiomerically enriched α-hydroxy allylsilane produces a chiral allylzinc intermediate, which reacts with retention of configuration in the presence of an electrophile. Two remarkable features of this transformation are the stereochemical outcome during the formation of the allylzinc species and the complete stereocontrol in the organized six-membered transition state, which leads to an overall and complete transfer of chirality within the reaction sequence. PMID:27061357

  20. Brook Rearrangement as a Trigger for the Ring Opening of Strained Carbocycles.

    PubMed

    Zhang, Fa-Guang; Eppe, Guillaume; Marek, Ilan

    2016-01-11

    The combined regio- and stereoselective carbometalation of cyclopropenyl amides, followed by the addition of an acyl silane, led to the formation of polysubstituted cyclopropyl derivatives as unique diastereoisomers. Upon warming of the reaction mixture to room temperature, a Brook rearrangement proceeded with inversion of configuration to provide ready access to δ-ketoamides possessing a quaternary carbon center with high enantiomeric ratios through selective C-C bond cleavage of the ring. PMID:26663399

  1. Permian deposition in the north central Brooks Range, Alaska Constraints for tectonic reconstructions

    USGS Publications Warehouse

    Adams, K.E.; Mull, C.G.; Crowder, R.K.

    1997-01-01

    Two opposing tectonic models have been offered to explain the regional structural relations in the north central Brooks Range fold-thrust belt of northern Alaska. The first suggests that rocks of the northern Endicott Mountains were thrust from south to north over the area of the present Mount Doonerak high and are therefore highly allochthonous. The second implies that the rocks of the northern Endicott Mountains were deposited in a basin that lay north of the Mount Doonerak high and later were thrust a short distance southward onto the northern flank of the high and are thus parautochthonous. To provide stratigraphic constraints for these models, this study examines Permian facies of the north central Brooks Range. Permian rocks in the north central Brooks Range comprise a thin (40 to 160 m thick), fining-upward succession of clastic, storm-influenced shelf deposits. When the rocks of the northern Endicott Mountains are restored south of the Mount Doonerak area, a minimum distance of 80 km, the Permian deposits grade systematically from distal facies (Siksikpuk Formation) in the southwest to proximal facies (Echooka Formation) in the northeast. Facies trends in the reconstructed Permian basin include, from southwest to northeast, (1) an increase in carbonate content and corresponding decrease in silica content, (2) a general darkening and thickening of shaley intervals, (3) an increase in proximal features of storm beds, including coarser, thicker, more abundant, and more closely spaced beds, and (4) an increase in abundance and diversity of the faunal assemblage with a corresponding decrease in age. These stratigraphic relations imply that rocks of the northern Endicott Mountains are allochthonous and structurally overlie a proximal stratigraphic succession similar to that exposed in the Mount Doonerak area and northeastern Brooks Range. Copyright 1997 by the American Geophysical Union.

  2. Brook Rearrangement as a Trigger for the Ring Opening of Strained Carbocycles.

    PubMed

    Zhang, Fa-Guang; Eppe, Guillaume; Marek, Ilan

    2016-01-11

    The combined regio- and stereoselective carbometalation of cyclopropenyl amides, followed by the addition of an acyl silane, led to the formation of polysubstituted cyclopropyl derivatives as unique diastereoisomers. Upon warming of the reaction mixture to room temperature, a Brook rearrangement proceeded with inversion of configuration to provide ready access to δ-ketoamides possessing a quaternary carbon center with high enantiomeric ratios through selective C-C bond cleavage of the ring.

  3. Preparation and Reactivity of Acyclic Chiral Allylzinc Species by a Zinc-Brook Rearrangement.

    PubMed

    Leibeling, Markus; Shurrush, Khriesto A; Werner, Veronika; Perrin, Lionel; Marek, Ilan

    2016-05-10

    The zinc-Brook rearrangement of enantiomerically enriched α-hydroxy allylsilane produces a chiral allylzinc intermediate, which reacts with retention of configuration in the presence of an electrophile. Two remarkable features of this transformation are the stereochemical outcome during the formation of the allylzinc species and the complete stereocontrol in the organized six-membered transition state, which leads to an overall and complete transfer of chirality within the reaction sequence.

  4. Lisburne Group (Mississippian-Lower Permian) petrography, paragenesis, and hydrocarbon potential, central Brooks Range, Alaska

    SciTech Connect

    Krutak, P.R.

    1989-03-01

    Subsurface Lisburne Group (Wahoo) rocks at Prudhoe Bay-Kuparuk fields produce 2 million bbl of oil/day and contain 2-3 billion bbl of oil in place. Lisburne reservoirs are early diagenetic dolomites encased in thick platform carbonates. Petrographic and geochemical study of 264 samples from eight newly discovered surface Lisburne sections comprising 4568 ft of strata in the Central Brooks Range provide new data concerning paragenesis and hydrocarbon potential of Lisburne facies farther west. A generalized paragenetic sequence for Lisburne equivalents of this region is (1) initial carbonate skeletal growth (both aragonite and calcite) during the Carboniferous, (2) subsequent recrystallization and inversion of aragonite to calcite, the change to calcite proceeding throughout late Paleozoic and Permian-Triassic time, (3) dolomitization in the Middle and Late Carboniferous, (4) chertification and silicification, postdating slightly or overlapping dolomitization, (5) development of porosity (moldic, intracrystal, etc.) in the middle to late Mesozoic, (6) formation of fracture porosity concurrent with the Brooks Range orogeny during Middle Jurassic-Cretaceous time, (7) oil generation, migration, and emplacement in Late Cretaceous-Tertiary time. Lisburne dolomites from the Central Brooks Range bear heavy hydrocarbons. Rock-Eval pyrolysis indicates part of the section is in the oil window and near the peak wet-gas generation zone. Shale samples from this region display thermal alteration indices and vitrinite reflectance values near the oil floor and also indicate potential for sourcing dry gas. Conodont color alteration indices show part of the Lisburn could produce dry gas.

  5. Devonian-Mississippian carbonate sequence in the Maiyumerak Mountains, western Brooks Range, Alaska

    SciTech Connect

    Dumoulin, J.A. ); Harris, A.G. )

    1990-05-01

    Essentially continuous, dominantly carbonate sedimentation occurred from at least the Early Devonian through the Mississippian in the area that is now the Maiyumerak Mountains, western Brooks Range. This succession is in striking contrast to Paleozoic sequences in the eastern Brooks Range and in the subsurface across northern Alaska, where uppermost Devonian-Mississippian clastic and Carboniferous carbonates unconformably overlie Proterozoic or lower Paleozoic metasedimentary or sedimentary rocks. Conodonts obtained throughout the Maiyumerak Mountains sequence indicate that any hiatus is less than a stage in duration, and there is no apparent physical evidence of unconformity within the succession. The sequence is best exposed northwest of the Eli River, where Emsian-Eifelian dolostones (Baird Group) are conformably overlain by Kinderhookian-Osagian sandy limestones (Utukok Formation) and Osagian-Chesterian fossiliferous limestones (Kogruk Formation) of the Lisburne Group. Conodont species assemblages and sedimentary structures indicate deposition in a range of shallow-water shelf environments. The sequence extends at least 30 km, from the Noatak Quadrangle northeast into the Baird Mountains Quadrangle; its easternmost extent has not been definitively determined. The Ellesmerian orogeny, thought to have produced the extensive middle Paleozoic unconformity seen through much of northern Alaska apparently had little effect on this western Brooks Range sedimentary succession.

  6. Growth rate differences between resident native brook trout and non-native brown trout

    USGS Publications Warehouse

    Carlson, S.M.; Hendry, A.P.; Letcher, B.H.

    2007-01-01

    Between species and across season variation in growth was examined by tagging and recapturing individual brook trout Salvelinus fontinalis and brown trout Salmo trutta across seasons in a small stream (West Brook, Massachusetts, U.S.A.). Detailed information on body size and growth are presented to (1) test whether the two species differed in growth within seasons and (2) characterize the seasonal growth patterns for two age classes of each species. Growth differed between species in nearly half of the season- and age-specific comparisons. When growth differed, non-native brown trout grew faster than native brook trout in all but one comparison. Moreover, species differences were most pronounced when overall growth was high during the spring and early summer. These growth differences resulted in size asymmetries that were sustained over the duration of the study. A literature survey also indicated that non-native salmonids typically grow faster than native salmonids when the two occur in sympatry. Taken together, these results suggest that differences in growth are not uncommon for coexisting native and non-native salmonids. ?? 2007 The Authors.

  7. Facies comparison of autochthonous and allochthonous Permian and Triassic units, north-central Brooks Range, Alaska

    SciTech Connect

    Adams, K.E.

    1985-04-01

    Eight stratigraphic sections of Permian and Triassic rocks have been studied over a 30 km by 150 km area in the Endicott and Philip Smith Mountains of the central Brooks Range. Six of the sections are located on the Endicott Mountains allochthon, and the remaining two are parautochthonous columns in the Mount Doonerak area. The sections record a facies transition between the autochthonous Sadlerochit Group and Shublik Formation of the northeastern Brooks Range and the characteristically siliceous rocks of the allochthonous Siksikpuk and Otuk formations of the western Brooks Range. Laterally continuous and bioturbated beds of fine-grained sandstone, siltstone, and shale dominantly compose the Permian sequence, whereas the Triassic rocks consist of black shales, thin rhythmically bedded siliceous mudstones, and fossiliferous limestones. When the allochthonous sections are restored to a position south of the Mount Doonerak area, a general shallowing trend from southwest to northwest becomes evident within the reconstructed marine basin. To the south and west, the Permian sediments show a marked increase in silica content, with the occurrence of barite and a corresponding decrease in the thickness of the basal, coarser grained clastics. The Triassic formations also document an increase in silica and the presence of barite to the south and west, while becoming significantly sooty and phosphatic to the north and east. Ongoing petrographic and micropaleontologic studies of the field data will clarify these general paleogeographic relationships.

  8. Spatial and temporal Brook Trout density dynamics: Implications for conservation, management, and monitoring

    USGS Publications Warehouse

    Wagner, Tyler; Jefferson T. Deweber,; Jason Detar,; Kristine, David; John A. Sweka,

    2014-01-01

    Many potential stressors to aquatic environments operate over large spatial scales, prompting the need to assess and monitor both site-specific and regional dynamics of fish populations. We used hierarchical Bayesian models to evaluate the spatial and temporal variability in density and capture probability of age-1 and older Brook Trout Salvelinus fontinalis from three-pass removal data collected at 291 sites over a 37-year time period (1975–2011) in Pennsylvania streams. There was high between-year variability in density, with annual posterior means ranging from 2.1 to 10.2 fish/100 m2; however, there was no significant long-term linear trend. Brook Trout density was positively correlated with elevation and negatively correlated with percent developed land use in the network catchment. Probability of capture did not vary substantially across sites or years but was negatively correlated with mean stream width. Because of the low spatiotemporal variation in capture probability and a strong correlation between first-pass CPUE (catch/min) and three-pass removal density estimates, the use of an abundance index based on first-pass CPUE could represent a cost-effective alternative to conducting multiple-pass removal sampling for some Brook Trout monitoring and assessment objectives. Single-pass indices may be particularly relevant for monitoring objectives that do not require precise site-specific estimates, such as regional monitoring programs that are designed to detect long-term linear trends in density.

  9. 7 CFR Exhibits A-F to Subpart A... - [Reserved

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 14 2013-01-01 2013-01-01 false A Exhibits A-F to Subpart A of Part 1955 Agriculture Regulations of the Department of Agriculture (Continued) RURAL HOUSING SERVICE, RURAL BUSINESS-COOPERATIVE... Real and Chattel Property Exhibits A-F to Subpart A of Part 1955...

  10. 7 CFR Exhibits A-F to Subpart A... - [Reserved

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 14 2014-01-01 2014-01-01 false A Exhibits A-F to Subpart A of Part 1955 Agriculture Regulations of the Department of Agriculture (Continued) RURAL HOUSING SERVICE, RURAL BUSINESS-COOPERATIVE... Real and Chattel Property Exhibits A-F to Subpart A of Part 1955...

  11. 7 CFR Exhibits A-F to Subpart A... - [Reserved

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 14 2011-01-01 2011-01-01 false A Exhibits A-F to Subpart A of Part 1955 Agriculture Regulations of the Department of Agriculture (Continued) RURAL HOUSING SERVICE, RURAL BUSINESS-COOPERATIVE... Real and Chattel Property Exhibits A-F to Subpart A of Part 1955...

  12. 7 CFR Exhibits A-F to Subpart A... - [Reserved

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 14 2012-01-01 2012-01-01 false A Exhibits A-F to Subpart A of Part 1955 Agriculture Regulations of the Department of Agriculture (Continued) RURAL HOUSING SERVICE, RURAL BUSINESS-COOPERATIVE... Real and Chattel Property Exhibits A-F to Subpart A of Part 1955...

  13. 7 CFR Exhibits A-F to Subpart A... - [Reserved

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 14 2010-01-01 2009-01-01 true A Exhibits A-F to Subpart A of Part 1955 Agriculture Regulations of the Department of Agriculture (Continued) RURAL HOUSING SERVICE, RURAL BUSINESS-COOPERATIVE... Real and Chattel Property Exhibits A-F to Subpart A of Part 1955...

  14. Part III: AFS - A Secure Distributed File System

    SciTech Connect

    Wachsmann, A.; /SLAC

    2005-06-29

    AFS is a secure distributed global file system providing location independence, scalability and transparent migration capabilities for data. AFS works across a multitude of Unix and non-Unix operating systems and is used at many large sites in production for many years. AFS still provides unique features that are not available with other distributed file systems even though AFS is almost 20 years old. This age might make it less appealing to some but with IBM making AFS available as open-source in 2000, new interest in use and development was sparked. When talking about AFS, people often mention other file systems as potential alternatives. Coda (http://www.coda.cs.cmu.edu/) with its disconnected mode will always be a research project and never have production quality. Intermezzo (http://www.inter-mezzo.org/) is now in the Linux kernel but not available for any other operating systems. NFSv4 (http://www.nfsv4.org/) which picked up many ideas from AFS and Coda is not mature enough yet to be used in serious production mode. This article presents the rich features of AFS and invites readers to play with it.

  15. Embedding Assessment for Learning (AfL) into Science

    ERIC Educational Resources Information Center

    Crossland, John

    2012-01-01

    Although the National Strategies for improving English schools no longer exist, the "Pedagogy and Practice" pack provides a valuable resource for producing an Assessment for Learning (AfL) framework that describes a hierarchy of skills for AfL. Based on the hierarchy, training took place in three North Yorkshire schools. To focus attention on the…

  16. DDX6 transfers P-TEFb kinase to the AF4/AF4N (AFF1) super elongation complex

    PubMed Central

    Mück, Fabian; Bracharz, Silvia; Marschalek, Rolf

    2016-01-01

    AF4/AFF1 and AF5/AFF4 are both backbones for the assembly of “super elongation complexes” (SECs) that exert 2 distinct functions after the recruitment of P-TEFb from the 7SK snRNP: (1) initiation and elongation of RNA polymerase II gene transcription, and (2) modification of transcribed gene regions by distinct histone methylation patterns. In this study we aimed to investigate one of the initial steps, namely how P-TEFb is transferred from 7SK snRNPs to the SECs. In particular, we were interested in the role of DDX6 that we have recently identified as part of the AF4 complex. DDX6 is an evolutionarily conserved member of the DEAD-box RNA helicase family that is known to control miRNA and mRNA biology (translation, storage and degradation). Overexpressed DDX6 is associated with different cancer types and with c-Myc protein overexpression. We could demonstrate that DDX6 binds to 7SK snRNA and causes the release and transfer of P-TEFb to the AF4/AF4N SEC. DDX6 also binds stably to AF4 and AF4N as demonstrated by GST pull-down and co-immunoprecipitation experiments. As a consequence, overexpression of either AF4/AF4N or DDX6 resulted in a strong increase of mRNA production (5-6 fold), while their simultaneous expression increased the cellular mRNA production by 11-fold. Conversely, the corresponding knockdown of DDX6 decreased mRNA production by 70%. In conclusion, AF4/AF4N and DDX6 represent key molecules for the elongation process of gene transcription and a model will be proposed for the hand-over process of P-TEFb to SECs. PMID:27679741

  17. DDX6 transfers P-TEFb kinase to the AF4/AF4N (AFF1) super elongation complex.

    PubMed

    Mück, Fabian; Bracharz, Silvia; Marschalek, Rolf

    2016-01-01

    AF4/AFF1 and AF5/AFF4 are both backbones for the assembly of "super elongation complexes" (SECs) that exert 2 distinct functions after the recruitment of P-TEFb from the 7SK snRNP: (1) initiation and elongation of RNA polymerase II gene transcription, and (2) modification of transcribed gene regions by distinct histone methylation patterns. In this study we aimed to investigate one of the initial steps, namely how P-TEFb is transferred from 7SK snRNPs to the SECs. In particular, we were interested in the role of DDX6 that we have recently identified as part of the AF4 complex. DDX6 is an evolutionarily conserved member of the DEAD-box RNA helicase family that is known to control miRNA and mRNA biology (translation, storage and degradation). Overexpressed DDX6 is associated with different cancer types and with c-Myc protein overexpression. We could demonstrate that DDX6 binds to 7SK snRNA and causes the release and transfer of P-TEFb to the AF4/AF4N SEC. DDX6 also binds stably to AF4 and AF4N as demonstrated by GST pull-down and co-immunoprecipitation experiments. As a consequence, overexpression of either AF4/AF4N or DDX6 resulted in a strong increase of mRNA production (5-6 fold), while their simultaneous expression increased the cellular mRNA production by 11-fold. Conversely, the corresponding knockdown of DDX6 decreased mRNA production by 70%. In conclusion, AF4/AF4N and DDX6 represent key molecules for the elongation process of gene transcription and a model will be proposed for the hand-over process of P-TEFb to SECs. PMID:27679741

  18. DDX6 transfers P-TEFb kinase to the AF4/AF4N (AFF1) super elongation complex

    PubMed Central

    Mück, Fabian; Bracharz, Silvia; Marschalek, Rolf

    2016-01-01

    AF4/AFF1 and AF5/AFF4 are both backbones for the assembly of “super elongation complexes” (SECs) that exert 2 distinct functions after the recruitment of P-TEFb from the 7SK snRNP: (1) initiation and elongation of RNA polymerase II gene transcription, and (2) modification of transcribed gene regions by distinct histone methylation patterns. In this study we aimed to investigate one of the initial steps, namely how P-TEFb is transferred from 7SK snRNPs to the SECs. In particular, we were interested in the role of DDX6 that we have recently identified as part of the AF4 complex. DDX6 is an evolutionarily conserved member of the DEAD-box RNA helicase family that is known to control miRNA and mRNA biology (translation, storage and degradation). Overexpressed DDX6 is associated with different cancer types and with c-Myc protein overexpression. We could demonstrate that DDX6 binds to 7SK snRNA and causes the release and transfer of P-TEFb to the AF4/AF4N SEC. DDX6 also binds stably to AF4 and AF4N as demonstrated by GST pull-down and co-immunoprecipitation experiments. As a consequence, overexpression of either AF4/AF4N or DDX6 resulted in a strong increase of mRNA production (5-6 fold), while their simultaneous expression increased the cellular mRNA production by 11-fold. Conversely, the corresponding knockdown of DDX6 decreased mRNA production by 70%. In conclusion, AF4/AF4N and DDX6 represent key molecules for the elongation process of gene transcription and a model will be proposed for the hand-over process of P-TEFb to SECs.

  19. Toward a petabyte-scale AFS service at CERN

    NASA Astrophysics Data System (ADS)

    van der Ster, Daniel; Moscicki, Jakub T.; Wiebalck, Arne

    2014-06-01

    AFS is a mature and reliable storage service at CERN, having worked for more than 20 years as the provider of Unix home directories and project areas. Recently, the AFS service has grown at unprecedented rates (200% in the past year); this growth was unlocked thanks to innovations in both the hardware and software components of our file servers. This work presents how AFS is used at CERN and how the service offering is evolving with the increasing storage needs of its local and remote user communities. In particular, we demonstrate the usage patterns for home directories, workspaces and project spaces, as well as show the daily work which is required to rebalance data and maintaining stability and performance. Finally, we highlight some recent changes and optimisations made to the AFS Service, thereby revealing how AFS can possibly operate at all while being subjected to frequent-almost DDOS-like-attacks from its users.

  20. Level II scour analysis for Bridge 10 (NORWTH00120010) Town Highway 012 Bloody Brook, Norwich, Vermont

    USGS Publications Warehouse

    Ayotte, Joseph D.

    1996-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure NORWTH00120010 on town highway 12 crossing Bloody Brook, Norwich, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). A Level I study is included in Appendix E of this report. A Level I study provides a qualitative geomorphic characterization of the study site. Information on the bridge, available from VTAOT files, was compiled prior to conducting the Level I and Level II analyses and can be found in Appendix D. The site is in the New England Upland physiographic province in east-central Vermont. The 8.98-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the left bank upstream and the left and right banks downstream are forested. The immediate right bank upstream is covered by shrub and brush with pasture on the overbank. Town Highway 12 runs along the valley of Bloody Brook; however, at structure NORWTH00120010 the road crosses Bloody Brook at a 90-degree angle. In the study area, Bloody Brook has a sinuous channel with a slope of approximately 0.014 ft/ft, an average channel top width of 41 ft and an average channel depth of 3 ft. The predominant channel bed materials are gravel and cobble (D50 is 51.0 mm or 0.167 ft). The geomorphic assessment at the time of the Level I site visit on October 31, 1994, indicated that the reach was unstable. The town highway 12 crossing of Bloody Brook is a 34-ft-long, two-lane bridge consisting of one 30-foot clear span (Vermont Agency of Transportation, written commun., July 29, 1994). The bridge is supported by vertical, concrete abutments with wingwalls. The right abutment is protected by sparse type-2 stone fill (less than 24 inches diameter). The channel is skewed 0 degrees to the opening and the opening-skew-to-roadway is 0 degrees

  1. LONGITUDINAL STUDY OF SEMEN QUALITY AFTER INTERMITTENT EXPOSURE TO AIR POLLUTION

    EPA Science Inventory

    LONGITUDINAL STUDY OF SEMEN QUALITY AFTER INTERMITTENT EXPOSURE TO AIR POLLUTION. J. Rubes*, D. Zudova*, Veterinary Research Institute, Brno, CR, S.G. Selevan*, US EPA/ORD/NCEA, Washington, DC, D.P. Evenson, South Dakota State University, Brookings, SD, and S.D. Perreault, US ...

  2. Hydrogeology and ground-water flow, fractured Mesozoic structural-basin rocks, Stony Brook, Beden Brook, and Jacobs Creek drainage basins, west-central New Jersey

    USGS Publications Warehouse

    Lewis, Jean C.; Jacobsen, Eric

    1995-01-01

    This study was undertaken to characterize ground- water flow in the Stony Brook, Beden Brook, and Jacobs Creek drainage basins in west-central New Jersey. The 89-square-mile study area is underlain by dipping beds of fractured siltstone, shale, and sandstone and by massive diabase sills. In all of the rocks, the density of interconnected fractures decreases with depth. A major fault extends through the study area, and rocks on both sides of the fault are extensively fractured. The average annual rates of precipitation and ground-water recharge in the study area are 45.07 inches and 8.58 inches, respectively. The rate of recharge to diabase rocks is about one-half the rate of recharge to other rocks. Part of the surface runoff from diabase rocks enters the ground-water system where it encounters more permeable rocks. Most ground water in the study area follows short, shallow flow paths. A three- dimensional finite-difference model of ground-water flow was developed to test hypotheses concerning geologic features that control ground-water flow in the study area. The decrease in the density of interconnected fractures with depth was represented by dividing the model into two layers with different hydraulic conductivity. The pinching out of water- bearing beds in the dip direction at land surface and at depth was simulated as a lower hydraulic conductivity in the dip direction than in the strike direction. This model can be used to analyze ground-water flow if the area of interest is more than about 0.5 square mile.

  3. Unraveling the Timing of Fluid Migration and Trap Formation in the Brooks Range Foothills: A Key to Discovering Hydrocarbons

    SciTech Connect

    Catherine L. Hanks

    2008-12-31

    Naturally occurring fractures can play a key role in the evolution and producibility of a hydrocarbon accumulation. Understanding the evolution of fractures in the Brooks Range/Colville basin system of northern Alaska is critical to developing a better working model of the hydrocarbon potential of the region. This study addressed this problem by collecting detailed and regional data on fracture distribution and character, structural geometry, temperature, the timing of deformation along the Brooks Range rangefront and adjacent parts of the Colville basin, and the in situ stress distribution within the Colville basin. This new and existing data then were used to develop a model of how fractures evolved in northern Alaska, both spatially and temporally. The results of the study indicate that fractures formed episodically throughout the evolution of northern Alaska, due to a variety of mechanisms. Four distinct fracture sets were observed. The earliest fractures formed in deep parts of the Colville basin and in the underlying Ellesmerian sequence rocks as these rocks experienced compression associated with the growing Brooks Range fold-and-thrust belt. The orientation of these deep basin fractures was controlled by the maximum in situ horizontal stress in the basin at the time of their formation, which was perpendicular to the active Brooks Range thrust front. This orientation stayed consistently NS-striking for most of the early history of the Brooks Range and Colville basin, but changed to NW-striking with the development of the northeastern Brooks Range during the early Tertiary. Subsequent incorporation of these rocks into the fold-and-thrust belt resulted in overprinting of these deep basin fractures by fractures caused by thrusting and related folding. The youngest fractures developed as rocks were uplifted and exposed. While this general order of fracturing remains consistent across the Brooks Range and adjacent Colville basin, the absolute age at any one

  4. An Implicit LU/AF FDTD Method

    NASA Technical Reports Server (NTRS)

    Beggs, John H.; Briley, W. Roger

    2001-01-01

    There has been some recent work to develop two and three-dimensional alternating direction implicit (ADI) FDTD schemes. These ADI schemes are based upon the original ADI concept developed by Peaceman and Rachford and Douglas and Gunn, which is a popular solution method in Computational Fluid Dynamics (CFD). These ADI schemes work well and they require solution of a tridiagonal system of equations. A new approach proposed in this paper applies a LU/AF approximate factorization technique from CFD to Maxwell s equations in flux conservative form for one space dimension. The result is a scheme that will retain its unconditional stability in three space dimensions, but does not require the solution of tridiagonal systems. The theory for this new algorithm is outlined in a one-dimensional context for clarity. An extension to two and threedimensional cases is discussed. Results of Fourier analysis are discussed for both stability and dispersion/damping properties of the algorithm. Results are presented for a one-dimensional model problem, and the explicit FDTD algorithm is chosen as a convenient reference for comparison.

  5. Summer movements of sub-adult brook trout, landlocked Atlantic salmon, and smallmouth bass in the Rapid River, Maine

    USGS Publications Warehouse

    Jackson, Casey A. L.; Zydlewski, Joseph

    2009-01-01

    Summer movement patterns and spatial overlap of native sub-adult brook trout (Salvelinus fontinalis), non-native landlocked Atlantic salmon (Salmo salar), and non-native smallmouth bass (Micropterus dolomieu) in the Rapid River, Maine, were investigated with radio telemetry in 2005. Fishes were captured by angling, surgically implanted with radio transmitters, and tracked actively from June through September. Most brook trout (96%) and landlocked salmon (72%) displayed long distance movements (>1 km) to open water bodies (28 June to 4 July) followed by periods of time spent in presumed thermal refigia (5 July to 16 September). Summer water temperature rose above 25 °C, near the reported lethal limits for these coldwater species. In contrast, the majority of smallmouth bass (68%), a warrnwater species, did not make long distance movements from areas of initial capture, remaining in mainstem sections of the river (28 June to 16 September). Spatial overlap of smallmouth bass and brook trout in the summer is unlikely because brook trout presumably move to thermal rehgia during this time. However, interspecific competition between brook trout and landlocked salmon may occur since they select similar habitats June through September.

  6. Environmental planning as a tool for economic development: The black brook watershed experience

    SciTech Connect

    Ryner, P.C.; Heller, G.B.

    1995-12-01

    The Keene, New Hampshire Planning Department has attempted to use environmental planning as a tool to facilitate industrial development of the Black Brook Watershed. The City has established detailed modeling of drainage, floodplains and groundwater, and has placed that information on accurate computer-based maps. When provided to developers at the beginning of the development process, this environmental information expidites design and permitting while also improving the likelihood of protecting sensitive environmental areas. Starting in 1987 as part of a Master Plan revision process, the Planning Department decided to concentrate on the Black Brook Watershed in northwestern Keene as a target area for a new approach to economic development and environmental protection. The entire watershed was chosen as the boundary for this study area and detailed studies were conducted. During this effort the City formulated a new Economic Development Master Plan which called for the creation of approximately 300 acres of new industrial development within the next ten years. The Black Brook basin was identified as the preferred site. Because of pro-active environmental planning, the City is now able to work in active, cooperative partnership with the private sector in the development of this area. It is clear from this first specific development project that the project development and permitting process will be shortened by at least 60 days, and a minimum of $5,000 to $10,000 in preliminary site information costs will be saved. The availability of good information on wetlands and floodplains has already had a dramatic impact upon proposed site design and has achieved the desired objective of avoiding these sensitive areas whenever possible. The City is now working on the design of an Industrial Design and Permitting System which will be applied to the entire City, based upon what has been learned from this effort.

  7. New orbit recalculations of comet C/1890 F1 Brooks and its dynamical evolution

    NASA Astrophysics Data System (ADS)

    Królikowska, Małgorzata; Dybczyński, Piotr A.

    2016-08-01

    C/1890 F1 Brooks belongs to a group of 19 comets used by Jan Oort to support his famous hypothesis on the existence of a spherical cloud containing hundreds of billions of comets with orbits of semi-major axes between 50 000 and 150 000 au. Comet Brooks stands out from this group because of a long series of astrometric observations as well as a nearly 2-yr-long observational arc. Rich observational material makes this comet an ideal target for testing the rationality of an effort to recalculate astrometric positions on the basis of original (comet-star) measurements using modern star catalogues. This paper presents the results of such a new analysis based on two different methods: (i) automatic re-reduction based on cometary positions and the (comet-star) measurements and (ii) partially automatic re-reduction based on the contemporary data for the reference stars originally used. We show that both methods offer a significant reduction in the uncertainty of orbital elements. Based on the most preferred orbital solution, the dynamical evolution of comet Brooks during three consecutive perihelion passages is discussed. We conclude that C/1890 F1 is a dynamically old comet that passed the Sun at a distance below 5 au during its previous perihelion passage. Furthermore, its next perihelion passage will be a little closer than during the 1890-1892 apparition. C/1890 F1 is interesting also because it suffered extremely small planetary perturbations when it travelled through the planetary zone. Therefore, in the next passage through perihelion, it will once again be a comet from the Oort spike.

  8. Spatial structure of morphological and neutral genetic variation in Brook Trout

    USGS Publications Warehouse

    Kazyak, David C.; Hilderbrand, Robert H.; Keller, Stephen R.; Colaw, Mark C.; Holloway, Amanda E.; Morgan, Raymond P.; King, Timothy L.

    2015-01-01

    Brook Trout Salvelinus fontinalis exhibit exceptional levels of life history variation, remarkable genetic variability, and fine-scale population structure. In many cases, neighboring populations may be highly differentiated from one another to an extent that is comparable with species-level distinctions in other taxa. Although genetic samples have been collected from hundreds of populations and tens of thousands of individuals, little is known about whether differentiation at neutral markers reflects phenotypic differences among Brook Trout populations. We compared differentiation in morphology and neutral molecular markers among populations from four geographically proximate locations (all within 24 km) to examine how genetic diversity covaries with morphology. We found significant differences among and/or within streams for all three morphological axes examined and identified the source stream of many individuals based on morphology (52.3% classification efficiency). Although molecular and morphological differentiation among streams ranged considerably (mean pairwise FST: 0.023–0.264; pairwise PST: 0.000–0.339), the two measures were not significantly correlated. While in some cases morphological characters appear to have diverged to a greater extent than expected by neutral genetic drift, many traits were conserved to a greater extent than were neutral genetic markers. Thus, while Brook Trout exhibit fine-scale spatial patterns in both morphology and neutral genetic diversity, these types of biological variabilities are being structured by different ecological and evolutionary processes. The relative influences of genetic drift versus selection and phenotypic plasticity in shaping morphology appear to vary among populations occupying nearby streams.

  9. Drivers and evolution of episodic acidification at the Bear Brook Watershed in Maine, USA.

    PubMed

    Laudon, Hjalmar; Norton, Stephen A

    2010-12-01

    Despite decades of research about episodic acidification in many regions of the world, the understanding of what controls the transient changes in stream water chemistry occurring during rain and snow melt events is still limited. Here, we use 20 years of hydrological and stream chemical data from the paired watershed study at Bear Brook Watershed in Maine (BBWM), USA to improve the understanding of the effects of acid deposition on the causes, drivers, and evolution of episodic acidification. The long-term experimental study at BBWM includes 18 years of chemical treatment of the West Bear Brook (WB) watershed with (NH(4))(2)SO(4). East Bear Brook (EB) serves as reference. The treatment started in 1989 following a 2-year pretreatment period. We analyzed 212 hydrological episodes using an episode model that can separate and quantify individual drivers of the transient change in acid-neutralizing capacity (ANC) during hydrological events. The results suggest that 18 years of N and S addition have not affected the natural drivers of episodic acidification of base-cation dilution, marine sea salt episodes, or organic acidity during rain and snow melt events. The contribution of SO4(2-) to the ANC decline in WB has been increasing linearly since the beginning of watershed treatment, while the role of NO3- has remained relatively constant after an initial increase. This is contradictory to many previous shorter-term studies and illustrates the need for a more mechanistic understanding of the causes and drivers of episodic acidification during rain- and snow melt-driven hydrological events.

  10. Persistent mortality of brook trout in episodically acidified streams of the Southwestern Adirondack Mountains, New York

    USGS Publications Warehouse

    Baldigo, Barry P.; Lawrence, G.; Simonin, H.

    2007-01-01

    Water chemistry, discharge, and mortality of caged brook trout Salvelinus fontinalis were characterized in six headwater streams in the southwestern Adirondack Mountains of New York during spring 2001-2003. Results were compared with mortality recorded during similar tests during 1984-1985, 1988-1990, and 1997 to assess contemporary relations between stream acidification and brook trout mortality, the effects of exposure duration on mortality, and the effects of decreased rates of acidic deposition on water quality and fish mortality. Water quality and mortality of caged, young-of-the-year brook trout were evaluated during 30-d exposure periods from mid-April to late May during the most recent tests. In 2001-2003, mortality ranged from 0% to 100% and varied among streams and years, depending on the timing of toxicity tests in relation to the annual snowmelt and on the ability of each watershed to neutralize acids and prevent acutely toxic concentrations of inorganic monomeric aluminum (Alim) during high-flow events. Mortality rates in 2001-2003 tests were highly variable but similar to those observed during earlier tests. This similarity suggests that stream water quality in the southwestern Adirondack Mountains has not changed appreciably over the past 20 years. Concentrations of Alim greater than 2.0 and 4.0 ??mol/L were closely correlated with low and high mortality rates, respectively, and accounted for 83% of the variation in mortality. Two to four days of exposure to Alim concentrations greater than 4.0 ??mol/L resulted in 50-100% mortality. The extended periods (as long as 6 months) during which Alim concentrations exceeded 2.0 and 4.0 ??mol/L in one or more streams, combined with the low tolerance of many other fish species to acid and elevated Al concentrations, indicate a high potential for damage to fish communities in these and other poorly buffered streams of the Northeast. ?? Copyright by the American Fisheries Society 2007.

  11. Drivers and evolution of episodic acidification at the Bear Brook Watershed in Maine, USA.

    PubMed

    Laudon, Hjalmar; Norton, Stephen A

    2010-12-01

    Despite decades of research about episodic acidification in many regions of the world, the understanding of what controls the transient changes in stream water chemistry occurring during rain and snow melt events is still limited. Here, we use 20 years of hydrological and stream chemical data from the paired watershed study at Bear Brook Watershed in Maine (BBWM), USA to improve the understanding of the effects of acid deposition on the causes, drivers, and evolution of episodic acidification. The long-term experimental study at BBWM includes 18 years of chemical treatment of the West Bear Brook (WB) watershed with (NH(4))(2)SO(4). East Bear Brook (EB) serves as reference. The treatment started in 1989 following a 2-year pretreatment period. We analyzed 212 hydrological episodes using an episode model that can separate and quantify individual drivers of the transient change in acid-neutralizing capacity (ANC) during hydrological events. The results suggest that 18 years of N and S addition have not affected the natural drivers of episodic acidification of base-cation dilution, marine sea salt episodes, or organic acidity during rain and snow melt events. The contribution of SO4(2-) to the ANC decline in WB has been increasing linearly since the beginning of watershed treatment, while the role of NO3- has remained relatively constant after an initial increase. This is contradictory to many previous shorter-term studies and illustrates the need for a more mechanistic understanding of the causes and drivers of episodic acidification during rain- and snow melt-driven hydrological events. PMID:20535549

  12. Tuning the Music: Acoustic Force Spectroscopy (AFS) 2.0.

    PubMed

    Kamsma, Douwe; Creyghton, Ramon; Sitters, Gerrit; Wuite, Gijs J L; Peterman, Erwin J G

    2016-08-01

    AFS is a recently introduced high-throughput single-molecule technique that allows studying structural and mechanochemical properties of many biomolecules in parallel. To further improve the method, we developed a modelling tool to optimize the layer thicknesses, and a calibration method to experimentally validate the modelled force profiles. After optimization, we are able to apply 350pN on 4.5μm polystyrene beads, without the use of an amplifier, at the coverslip side of the AFS chip. Furthermore, we present the use of a transparent piezo to generate the acoustic force and we show that AFS can be combined with high-NA oil or water-immersion objectives. With this set of developments AFS will be applicable to a broad range of single-molecule experiments. PMID:27163865

  13. New cave species of Sinella Brook, 1882 from China (Collembola: Entomobryidae).

    PubMed

    Zhao, Lina; Zhang, Feng

    2016-01-01

    Springtails, especially entomobryids, are abundant in Karst faunas. Five new species of Sinella Brook are described here from caves in southern China: S. liuae sp. nov., S. hunanica sp. nov., S. tigris sp. nov., S. minuta sp. nov. and S. tiani sp. nov. A new record of Sinella sineocula Chen & Christiansen, is also recorded. These species differ in claw structure, chaetae on ventral side of the head, and body chaetotaxy. An updated key to cave species of Sinella from China is provided. PMID:27615947

  14. Evaluation of nuclear facility decommissioning projects: summary report. Plum Brook Reactor Facility

    SciTech Connect

    Doerge, D.H.; Miller, R.L.

    1984-02-01

    This document summarizes information concerning the decommissioning of the Plum Brook Reactor Facility, which was placed in a Nuclear Regulatory Commission (NRC) approved safe storage configuration. The data were placed in a computerized information retrieval/manipulation system which permits future utilization of this information in decommissioning of similar facilities. The information is presented both in computer output form and a manually assembled summarization. Complete cost data were not readily available and decommissioning activities did not in all cases conform with current criteria for the SAFSTOR decommissioning mode, therefore no cost comparisons were made.

  15. Tectonic evolution of the central Brooks Range mountain front: Evidence from the Atigun Gorge region

    USGS Publications Warehouse

    Mull, C.G.; Glenn, R.K.; Adams, K.E.

    1997-01-01

    Atigun Gorge, at the northern front of the eastern Endicott Mountains, contains well-exposed rocks of the upper part of the Endicott Mountains allochthon and rocks of the structurally higher Picnic Creek or Ipnavik River allochthon. These allochthons contain rocks as young as Early Cretaceous (Valanginian) and are separated by a nearly vertical fault zone that contains exotic blocks of Triassic and Jurassic chert and silicified mudstone. Siliceous rocks of this type are not present in the Endicott Mountains allochthon but are characteristic of the Picnic Creek, Ipnavik River, and some of the other allochthons that structurally overlie the Endicott Mountains allochthon in the central and western Brooks Range. These exotic blocks, therefore indicate that structurally higher rocks of either the Picnic Creek or Ipnavik River allochthon were emplaced during the Early Cretaceous and are preserved along the northern flank of the eastern Endicott Mountains. The deformed thickness of this higher allochthon in the subsurface north of the mountains is unknown but probably exceeds 2 kilometers. Similar relations are mapped east of Atigun Gorge in an area of structural transition from the eastern Endicott Mountains into the northern Philip Smith Mountains, which are formed by the parautochthonous North Slope stratigraphic assemblage. The allochthonous rocks at the mountain front are regionally unconformably overlain by proximal Lower Cretaceous (Albian) foredeep conglomerate at the southern flank of the Colville basin, but at Atigun Gorge, the base of these deposits is interpreted as a possible back thrust at a triangle zone. Conglomerate clasts in the foredeep deposits are dominantly chert, mafic igneous rock, and other lithologies characteristic of the Picnic Creek and Ipnavik River allochthons and scattered clasts from the Endicott Mountains allochthon. The conglomerates show that the chert-rich allochthonous rocks and the Endicott Mountains allochthon were emplaced in the

  16. Scientific explanation and ecological validity: a reply to Brooks and Baumeister.

    PubMed

    House, B J

    1977-05-01

    There are two different goals a researcher might have in studying behavior of retarded persons. One is to gain a scientific understanding of low intelligence as a subcategory of human intellectual functioning. The other is to develop practical techniques for prediction, control, and remediation of retardation in daily life. Brooks and Baumeister (1977) have confused the two and have advocated methods suitable for practical application to answer questions about the nature of retardation. They have done a disservice to the field in disparaging basic research.

  17. Familial multiple eccrine spiradenomas with cylindromatous features associated with epithelioma adenoides cysticum of Brooke.

    PubMed

    Berberian, B J; Sulica, V I; Kao, G F

    1990-07-01

    Four cases of rare familial multiple eccrine spiradenomas showing features of dermal cylindromas and associated with epithelioma adenoides cysticum of Brooke are reported. Skin biopsy specimens were obtained from three generations of this family and routine histochemical and immunoperoxidase stains were used. The eldest affected family member had multiple disfiguring facial and scalp tumors, which precipitated episodes of depression. Unlike other cutaneous genetic disorders, such as neurofibromatosis and tuberous sclerosis, the cutaneous adnexal tumors occurring in these patients continue to erupt and grow during their lifetimes.

  18. Industrial cogeneration case study No. 2: American Cyanamid Chemical Company, Bound Brook, New Jersey

    SciTech Connect

    Not Available

    1980-01-01

    Within a project for evaluating the economics of cogeneration for industrial plants with an electrical capacity of 10,000 to 30,000 kW, the American Cyanamid plant at Bound Brook, NJ was selected for study. Built between 1915 and 1920 this power plant was converted in the 1960's from coal-fueling to oil and natural gas. Information is presented on the plant site, fuel usage, generation costs, comparative cost of purchasable electric power, equipment used, performance, and reliability and capital and maintenance costs. (LCL)

  19. A 2000 year varve-based climate record from the central Brooks Range, Alaska

    SciTech Connect

    Bird, B.W.; Abbott, M.B.; Finney, B.P.; Kutchko, Barbara

    2009-01-01

    Varved minerogenic sediments from glacial-fed Blue Lake, northern Alaska, are used to investigate late Holocene climate variability. Varve thickness measurements track summer temperature recorded at Atigun Pass, located 41 km east at a similar elevation (r2 = 0.31, P = 0.08). Results indicate that climate in the Brooks Range from 10 to 730 AD (varve year) was warm with precipitation inferred to be higher than during the twentieth century. The varve-temperature relationship for this period was likely compromised and not used in our temperature reconstruction because the glacier was greatly reduced, or absent, exposing sub-glacial sediments to erosion from enhanced precipitation.

  20. 75 FR 3217 - J&T Hydro Company; H. Dean Brooks and W. Bruce Cox; Notice of Application for Transfer of License...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-20

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission J&T Hydro Company; H. Dean Brooks and W. Bruce Cox; Notice of Application... 30, 2009, J&T Hydro Company (transferor) and W. Dean Brooks, and H. Bruce Cox (transferees) filed...

  1. Landscape-scale evaluation of asymmetric interactions between Brown Trout and Brook Trout using two-species occupancy models

    USGS Publications Warehouse

    Wagner, Tyler; Jefferson T. Deweber,; Jason Detar,; John A. Sweka,

    2013-01-01

    Predicting the distribution of native stream fishes is fundamental to the management and conservation of many species. Modeling species distributions often consists of quantifying relationships between species occurrence and abundance data at known locations with environmental data at those locations. However, it is well documented that native stream fish distributions can be altered as a result of asymmetric interactions between dominant exotic and subordinate native species. For example, the naturalized exotic Brown Trout Salmo trutta has been identified as a threat to native Brook Trout Salvelinus fontinalis in the eastern United States. To evaluate large-scale patterns of co-occurrence and to quantify the potential effects of Brown Trout presence on Brook Trout occupancy, we used data from 624 stream sites to fit two-species occupancy models. These models assumed that asymmetric interactions occurred between the two species. In addition, we examined natural and anthropogenic landscape characteristics we hypothesized would be important predictors of occurrence of both species. Estimated occupancy for Brook Trout, from a co-occurrence model with no landscape covariates, at sites with Brown Trout present was substantially lower than sites where Brown Trout were absent. We also observed opposing patterns for Brook and Brown Trout occurrence in relation to percentage forest, impervious surface, and agriculture within the network catchment. Our results are consistent with other studies and suggest that alterations to the landscape, and specifically the transition from a forested catchment to one that contains impervious surface or agriculture, reduces the occurrence probability of wild Brook Trout. Our results, however, also suggest that the presence of Brown Trout results in lower occurrence probability of Brook Trout over a range of anthropogenic landscape characteristics, compared with streams where Brown Trout were absent.

  2. Growth and reproductive ecology of the eastern brook trout, Salvelinus fontinalis, in streams of differing vulnerability to acidic atmospheric deposition

    SciTech Connect

    Light, R.W.

    1983-01-01

    Three naturally infertile streams of differing vulnerability to acidic atmospheric deposition were studied to determine the status of their brook trout, Salvelinus fontinalis, populations and associated benthic communities. Of the three streams, Upper Three Runs was judged to be the least fertile, followed by Little Fishing Creek, with Roaring Run being the most fertile. The median weighted pH of acidic deposition impacting the watersheds was 3.8 for Upper Three Runs and 4.0 for Little Fishing Creek and Roaring Run. Brook trout from Roaring Run grew at a similar rate to those from Little Fishing Creek, with trout from Upper Three Runs showing the slowest growth. Roaring Run brook trout also had the highest relative condition of the three streams. Brook trout from Roaring Run and Little Fishing Creek generally matured one year later (age group II) than those from Upper Three Runs. Early maturity may be selected for in Upper Three Runs due to small annual increases in fecundity in higher age groups. Although the data were limited, there was a trend for brook trout from Upper Three Runs to produce fewer and larger ova. Roaring Run had higher volumes of benthos during fall and summer, and higher numbers during fall. Roaring Run and Little Fishing Creek had more, larger crayfish present, which added significantly to the volume of benthos in these streams. Qualitatively, Upper Three Runs had more shredders and fewer scrapers on a volume basis than the other two streams. On a per fish basis, the drift available to the fish in Roaring Run was always highest in volume, and highest in number during fall and spring. The brook trout from Roaring Run therefore had an advantage over those in the other two streams, by having a higher drift available per fish.

  3. Can nutrient limitations explain low and declining white spruce growth near the Arctic treeline in the eastern Brooks Range, Alaska?

    NASA Astrophysics Data System (ADS)

    Ellison, S.; Sullivan, P. F.

    2014-12-01

    The position of the Arctic treeline is of critical importance for global carbon cycling and surface energy budgets. However, controls on tree growth at treeline remain uncertain. In the Alaskan Brooks Range, 20th century warming has caused varying growth responses among treeline trees, with trees in the west responding positively, while trees in the east have responded negatively. The prevailing explanation of this trend ascribes the negative growth response to warming-induced drought stress in the eastern Brooks Range. However, recent measurements of carbon isotope discrimination in tree rings, xylem sap flow and needle gas exchange suggest that drought stress cannot explain these regional growth declines. Additionally, evidence from the western Brooks Range suggests that nutrient availability, rather than drought stress, may be the proximate control on tree growth. In this study, we investigated the hypothesis that low and declining growth of eastern Brooks Range trees is due to low and declining soil nutrient availability, which may continue to decrease with climate change as soils become drier and microbial activity declines. We compared microclimate, tree performance, and a wide range of proxies for soil nutrient availability in four watersheds along a west-east transect in the Brooks Range during the growing seasons of 2013 and 2014. We hypothesized that soil nutrient availability would track closely with the strong west-east precipitation gradient, with higher rainfall and greater soil nutrient availability in the western Brooks Range. We expected to find that soil water contents in the west are near optimum for nitrogen mineralization, while those in the east are below optimum. Needle nitrogen concentration, net photosynthesis, branch extension growth, and growth in the main stem are expected to decline with the hypothesized decrease in soil nutrient availability. The results of our study will elucidate the current controls on growth of trees near the

  4. Complex Transcriptional Control of the Antibiotic Regulator afsS in Streptomyces: PhoP and AfsR Are Overlapping, Competitive Activators▿

    PubMed Central

    Santos-Beneit, Fernando; Rodríguez-García, Antonio; Martín, Juan F.

    2011-01-01

    The afsS gene of several Streptomyces species encodes a small sigma factor-like protein that acts as an activator of several pathway-specific regulatory genes (e.g., actII-ORF4 and redD in Streptomyces coelicolor). The two pleiotropic regulators AfsR and PhoP bind to overlapping sequences in the −35 region of the afsS promoter and control its expression. Using mutated afsS promoters containing specific point mutations in the AfsR and PhoP binding sequences, we proved that the overlapping recognition sequences for AfsR and PhoP are displaced by 1 nucleotide. Different nucleotide positions are important for binding of AfsR or PhoP, as shown by electrophoretic mobility shift assays and by reporter studies using the luxAB gene coupled to the different promoters. Mutant promoter M5 (with a nucleotide change at position 5 of the consensus box) binds AfsR but not PhoP with high affinity (named “superAfsR”). Expression of the afsS gene from this promoter led to overproduction of actinorhodin. Mutant promoter M16 binds PhoP with extremely high affinity (“superPhoP”). Studies with ΔafsR and ΔphoP mutants (lacking AfsR and PhoP, respectively) showed that both global regulators are competitive transcriptional activators of afsS. AfsR has greater influence on expression of afsS than PhoP, as shown by reverse transcriptase PCR (RT-PCR) and promoter reporter (luciferase) studies. These two high-level regulators appear to integrate different nutritional signals (particularly phosphate limitation sensed by PhoR), S-adenosylmethionine, and other still unknown environmental signals (leading to AfsR phosphorylation) for the AfsS-mediated control of biosynthesis of secondary metabolites. PMID:21378195

  5. Complex transcriptional control of the antibiotic regulator afsS in Streptomyces: PhoP and AfsR are overlapping, competitive activators.

    PubMed

    Santos-Beneit, Fernando; Rodríguez-García, Antonio; Martín, Juan F

    2011-05-01

    The afsS gene of several Streptomyces species encodes a small sigma factor-like protein that acts as an activator of several pathway-specific regulatory genes (e.g., actII-ORF4 and redD in Streptomyces coelicolor). The two pleiotropic regulators AfsR and PhoP bind to overlapping sequences in the -35 region of the afsS promoter and control its expression. Using mutated afsS promoters containing specific point mutations in the AfsR and PhoP binding sequences, we proved that the overlapping recognition sequences for AfsR and PhoP are displaced by 1 nucleotide. Different nucleotide positions are important for binding of AfsR or PhoP, as shown by electrophoretic mobility shift assays and by reporter studies using the luxAB gene coupled to the different promoters. Mutant promoter M5 (with a nucleotide change at position 5 of the consensus box) binds AfsR but not PhoP with high affinity (named "superAfsR"). Expression of the afsS gene from this promoter led to overproduction of actinorhodin. Mutant promoter M16 binds PhoP with extremely high affinity ("superPhoP"). Studies with ΔafsR and ΔphoP mutants (lacking AfsR and PhoP, respectively) showed that both global regulators are competitive transcriptional activators of afsS. AfsR has greater influence on expression of afsS than PhoP, as shown by reverse transcriptase PCR (RT-PCR) and promoter reporter (luciferase) studies. These two high-level regulators appear to integrate different nutritional signals (particularly phosphate limitation sensed by PhoR), S-adenosylmethionine, and other still unknown environmental signals (leading to AfsR phosphorylation) for the AfsS-mediated control of biosynthesis of secondary metabolites.

  6. Growth of age-0 steelhead (Oncorhynchus mykiss) and brook trout (Salvelinus fontinalis) in the Pine River watershed, Alcona County, Michigan

    SciTech Connect

    Bellgraph, Brian J.; Thompson, Bradley E.; Hayes, Daniel B.; Riley, Timothy S.

    2006-12-01

    We sampled ten sites within the Pine River watershed, Alcona County, Michigan. In 2001, age-0 steelhead (Oncorhynchus mykiss) were collected to determine growth rates. In 2002, emergence dates of steelhead were determined by observational studies and age-0 steelhead and brook trout (Salvelinus fontinalis) were collected to determine growth rates. Steelhead emergence occurred from late June to mid-July 2002. Growth rates of both species varied among branches within the watershed (P<0.05). Steelhead growth varied from 0.24 to 0.42 mm/day and brook trout growth varied from 0.22 to 0.37 mm/day.

  7. Sedimentology and stratigraphy of the Kanayut Conglomerate, central and western Brooks Range, Alaska; report of 1981 field season

    USGS Publications Warehouse

    Nilsen, T.H.; Moore, T.E.

    1982-01-01

    The Upper Devonian and Lower Mississippian(?) Kanayut Conglomerate forms a major stratigraphic unit along the crest of the Brooks Range of northern Alaska. It crops out for an east-west distance of about 900 km and a north-south distance of about 65 km. The Kanayut is wholly allochthonous and has probably been transported northward on a series of thrust plates. The Kanayut is as thick as 2,600 m in the east-central Brooks Range. It thins and fines to the south and west. The Kanayut forms the middle part of the allochthonous sequence of the Endicott Group, an Upper Devonian and Mississippian clastic sequence underlain by platform limestones of the Baird Group and overlain by platform limestone, carbonaceous shale, and black chert of the Lisburne Group. The Kanayut overlies the marine Upper Devonian Noatak Sandstone or, where it is missing, the marine Upper Devonian Hunt Fork Shale. It is overlain by the marine Mississippian Kayak Shale. The Kanayut Conglomerate forms the fluvial part of a large, coarse-grained delta that prograded to the southwest in Late Devonian time and retreated in Early Mississippian time. Four sections of the Kanayut Conglomerate in the central Brooks Range and five in the western Brooks Range were measured in 1981. The sections from the western Brooks Range document the presence of fluvial cycles in the Kanayut as far west as the shores of the Chukchi Sea. The Kanayut in this area is generally finer grained than it is in the central and eastern Brooks Range, having a maximum clast size of 3 cm. It is probably about 300 m thick. The upper and lower contacts of the Kanayut are gradational. The lower Kanayut contains calcareous, marine-influenced sandstone within channel deposits, and the upper Kanayut contains probable marine interdistributary-bay shale sequences. The members of the Kanayut Conglomerate cannot be differentiated in this region. In the central Brooks Range, sections of the Kanayut Conglomerate at Siavlat Mountain and Kakivilak

  8. The role of Ca(2+) and Na (+) membrane transport in brook trout (Salvelinus fontinalis) spermatozoa motility.

    PubMed

    Bondarenko, Olga; Dzyuba, Borys; Cosson, Jacky; Rodina, Marek; Linhart, Otomar

    2014-10-01

    The role of environmental ion composition and osmolality in Ca(2+) signaled activation was assessed in spermatozoa of brook trout Salvelinus fontinalis. Milt from ten mature males was obtained by abdominal massage. Spermatozoa motility was evaluated in 0, 100, and 300 mOsm/kg NaCl or sucrose solutions, buffered by 10 mM Tris-HCl pH 8.5. For investigation of spermatozoa reaction to external Ca(2+) concentration, 2 mM ethylene glycol tetraacetic acid (EGTA) was added to the activation media as a calcium ions chelator. For investigation of the effect of external Na(+) concentration in conditions of low external Ca(2+), 100 µM amiloride was added to the EGTA-containing solutions as a Na(+) transport blocker. Low motility was observed in sucrose (Na(+) free) solutions containing 2 mM EGTA but not in Na(+) solutions containing 2 mM EGTA. Addition of amiloride led to significantly increased motility (P < 0.05) compared with sucrose (Na(+) free) solutions containing 2 mM EGTA. We conclude that Na(+) transport in Ca(2+)-free solutions plays a regulatory role in brook trout spermatozoa activation. The influence of competitive Na(+) and Ca(2+) transport on the control of spermatozoa activation requires further study with respect to its application for improvement of artificial activation and storage media. PMID:24718964

  9. Acoustical measurements of DOE/NASA MOD-0 wind turbine at Plum Brook Station, Ohio

    SciTech Connect

    Etter, C.L.; Kelley, N.D.; McKenna, H.E.; Linn, C.; Garrelts, R.

    1983-06-01

    This report documents the evaluation of low-frequency acoustic emissions associated with the operation of the DOE/NASA MOD-0 wind turbine generator located at Plum Brook Station, Ohio. These measurements were taken as part of a joint SERI/NASA Brook Station, Ohio. These measurements were taken as part of a joint SERI/NASA effort to study acoustic noise generation by utility-sized wind turbines. The machine-operating conditions closely simulated the operation of the larger DOE/NASA MOD-1 wind turbine installed near Boone, NC, in both its design downwind configuration and theoretical upwind mode. Measurement results indicated that acoustic impulses characteristic of the MOD-1 turbine were detectable only with a downwind configuration and a 35-rpm rotor speed, a situation which parallels a 23-rpm rotor speed operation on the MOD-1. Under the available meteorological conditions, no impulses were detected during downwind 23 rpm or by wind-induced noise, indicating a severe limitation of the microphone configuration used in these tests.

  10. Middle Jurassic U-Pb crystallization age for Siniktanneyak Mountain ophiolite, Brooks Range, Alaska

    SciTech Connect

    Moore, T.E. ); Aleinikoff, J.N.; Walter, M. )

    1993-04-01

    The authors report here a U-Pb age for the Siniktanneyak Mountain Ophiolite klippe in the west-central Brooks Range, the first U-Pb ophiolite age in northern Alaska. Like klippen of mafic and ultramafic rocks in the Brooks Range, the Siniktanneyak Mountain klippe is composed of a lower allochthon of Devonian and younger( ) diabase and metabasalt with trace-element characteristics of seamount basalts and an upper allochthon of ophiolite. The ophiolite is partial, consisting of (1) abundant dunite and subordinate harzburgite and wehrlite; (2) cumulate clinopyroxene gabbro, and (3) minor noncumulate clinopyroxene gabbro and subordinate plagiogranite; no sheeted dikes or volcanic rocks are known in the ophilitic allochthon. The plagiogranite forms small dikes and stocks that intrude the noncumulate gabbro and consists of zoned Na-rich plagioclase + clinopyroxene with interstial quartz and biotite. Five fractions of subhedral, tan zircon from the plagiogranite yield slightly discordant U-Pb data with an upper intercept age of 170 [+-] 3 Ma. The U-Pb data indicate that the Siniktanneyak Mountain ophiolite crystallized in the Middle Jurassic and was emplaced by thrusting onto mafic accretionary prism rocks within about 10 m.y. of crystallization. The U-Pb data provide an upper limit to the age of initiation of the Brookian orogeny.

  11. Water age and stream solute dynamics at the Hubbard Brook Experimental Forest (US)

    NASA Astrophysics Data System (ADS)

    Botter, Gianluca; Benettin, Paolo; McGuire, Kevin; Rinaldo, Andrea

    2016-04-01

    The contribution discusses experimental and modeling results from a headwater catchment at the Hubbard Brook Experimental Forest (New Hampshire, USA) to explore the link between stream solute dynamics and water age. A theoretical framework based on water age dynamics, which represents a general basis for characterizing solute transport at the catchment scale, is used to model both conservative and weathering-derived solutes. Based on the available information about the hydrology of the site, an integrated transport model was developed and used to estimate the relevant hydrochemical fluxes. The model was designed to reproduce the deuterium content of streamflow and allowed for the estimate of catchment water storage and dynamic travel time distributions (TTDs). Within this framework, dissolved silicon and sodium concentration in streamflow were simulated by implementing first-order chemical kinetics based explicitly on dynamic TTD, thus upscaling local geochemical processes to catchment scale. Our results highlight the key role of water stored within the subsoil glacial material in both the short-term and long-term solute circulation at Hubbard Brook. The analysis of the results provided by the calibrated model allowed a robust estimate of the emerging concentration-discharge relationship, streamflow age distributions (including the fraction of event water) and storage size, and their evolution in time due to hydrologic variability.

  12. Structural provinces of the northeastern Brooks Range, Arctic National Wildlife Refuge, Alaska

    SciTech Connect

    Wallace, W.K.; Hanks, C.L. )

    1990-07-01

    The dominant Cenozoic structures of the northeastern Brooks Range are anticlinoria with cores of sub-Mississippian rocks, reflecting a regional north-vergent duplex with a floor thrust in the sub-Mississippian sequence and a roof thrust in the Mississippian Kayak Shale. The number of horses forming each anticlinorium and the structural style of the overlying Mississippian and younger cover sequence varies regionally, providing a basis for dividing the northeastern Brooks Range into structural provinces. In the western province, each anticlinorium contains a single horse, and shortening above the Kayak Shale was accommodated mainly by detachment folds. To the north in the Sadlerochit Mountains, the Kayak Shale is depositionally discontinuous and rocks elsewhere separated by this detachment deformed together. In the eastern province, each anticlinorium contains multiple horses, and shortening above the Kayak Shale was accommodated largely by thrust duplication of Mississippian through Triassic rocks. In the narrow central province, the Devonian Okpilak batholith was detached from its roots, internally shortened along shear zones and by penetrative strain, and transported northward. Because the Kayak Shale is locally absent, the Mississippian and younger cover sequence deformed in part penetratively along with the batholith. 13 figs.

  13. Diversifying and correlational selection on behavior toward conspecific and heterospecific competitors in brook stickleback (Culaea inconstans)

    PubMed Central

    Peiman, Kathryn S; Robinson, Beren W

    2012-01-01

    Behaviors toward heterospecifics and conspecifics may be correlated because of shared mechanisms of expression in both social contexts (nonadaptive covariation) or because correlational selection favors adaptive covariation. We evaluated these hypotheses by comparing behavior toward conspecifics and heterospecifics in brook stickleback (Culaea inconstans) from three populations sympatric with and three allopatric from a competitor, the ninespine stickleback (Pungitius pungitius). Behavioral traits were classified into three multivariate components: overt aggression, sociability, and activity. The correlation of behavior between social contexts for both overt aggression and activity varied among populations in a way unrelated to sympatry with ninespine stickleback, while mean aggression was reduced in sympatry. Correlations in allopatric populations suggest that overt aggression and activity may genetically covary between social contexts for nonadaptive reasons. Sociability was rarely correlated in allopatry but was consistently correlated in sympatry despite reduced mean sociability, suggesting that correlational selection may favor a sociability syndrome in brook stickleback when they coexist with ninespine stickleback. Thus, interspecific competition may impose diversifying selection on behavior among populations, although the causes of correlated behavior toward conspecifics and heterospecifics and whether it can evolve in one social context independent of the other may depend on the type of behavior. PMID:23139874

  14. Modeling of a theoretical stream of comet 12P/Pons-Brooks

    NASA Astrophysics Data System (ADS)

    Tomko, Dušan

    2015-12-01

    We show the modeling of the theoretical stream of the Halley type comet 12P/Pons-Brooks in a single perihelion passage that was 250P0 orbital periods in the past (the orbital period is 70.85 years). The modeled stream consisted of 10,000 particles. We followed its dynamical evolution by the numerical integration from the moment of their ejection up to present. From the total number of 10,000 particles, 1227 particles are passing around the Earth's orbit within the distance 0.05 AU. These particles have a well-defined radiant (Fig. 2) predicted on the northern sky, with a high declination (from about 61° to 81°). The subsequent identification with available meteor databases can confirm whether the meteor shower is real or not. For this purpose we used three databases: the photographical, radio-meteor, and video-meteor database. Despite the well-defined radiant, which it consists of 1227 particles, we cannot certainly confirm, that comet 12P/Pons-Brooks is a parent body of some meteor shower observable on the Earth.

  15. Chronology of ophiolite crystallization, detachment, and emplacement: Evidence from the Brooks Range, Alaska

    SciTech Connect

    Wirth, K.R.; Bird, J.M. )

    1992-01-01

    {sup 40}Ar/{sup 39}Ar data from early Middle Jurassic ophiolites (187-184 Ma) in the western Brooks Range, Alaska, indicate that detachment - related metamorphism occurred {approximately}20 m.y. after crystallization and {approximately}20 m.y. before emplacement onto the Arctic Alaska margin. High-temperature metamorphic rocks along the basal surfaces of many ophiolites have ages that are contemporaneous with ophiolite crystallization, suggesting that detachment and thrust faulting occur while the lithosphere is young ({lt}10 Ma) and relatively hot. From these relations it has been generally assumed that detachment and initial overthrusting of oceanic lithosphere occur near the site of generation, such as a marginal basin or mid-ocean ridge. The new data from the Brooks Range ophiolites confirm previous indications that some ophiolites have much longer intervals between crystallization, thrust-related metamorphism, and emplacement. On the basis of these new results and data from other ophiolites, the authors propose that ophiolites originating within large ocean basins will generally have longer crystallization-to-emplacement intervals than the more commonly recognized marginal basin-type ophiolites.

  16. High-resolution geophysical data collected within Red Brook Harbor, Buzzards Bay, Massachusetts, in 2009

    USGS Publications Warehouse

    Turecek, Aaron M.; Danforth, William W.; Baldwin, Wayne E.; Barnhardt, Walter A.

    2012-01-01

    The U.S. Geological Survey conducted a high-resolution geophysical survey within Red Brook Harbor, Massachusetts, from September 28 through November 17, 2009. Red Brook Harbor is located on the eastern edge of Buzzards Bay, south of the Cape Cod Canal. The survey area was approximately 7 square kilometers, with depths ranging from 0 to approximately 10 meters. Data were collected aboard the U.S. Geological Survey Research Vessel Rafael. The research vessel was equipped with a 234-kilohertz interferometric sonar system to collect bathymetry and backscatter data, a dual frequency (3.5- and 200-kilohertz) compression high-intensity radar pulse seismic reflection profiler to collect subbottom data, a sound velocity profiler to acquire speed of sound within the water column, and a sea floor sampling device to collect sediment samples, video, and photographs. The survey was part of an ongoing cooperative effort between the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management to map the geology of the Massachusetts inner continental shelf. In addition to inclusion within the cooperative geologic mapping effort, these data will be used to assess the shallow-water mapping capability of the geophysical systems deployed for this project, with an emphasis on identifying resolution benchmarks for the interferometric sonar system.

  17. The rise and fall of isolation by distance in the anadromous brook charr (Salvelinus fontinalis Mitchill).

    PubMed Central

    Castric, Vincent; Bernatchez, Louis

    2003-01-01

    Geographic patterns of genetic diversity depend on a species' demographic properties in a given habitat, which may change over time. The rates at which patterns of diversity respond to changes in demographic properties and approach equilibrium are therefore pivotal in our understanding of spatial patterns of diversity. The brook charr Salvelinus fontinalis is a coastal fish exhibiting limited marine movements, such that a stable one-dimensional isolation-by-distance (IBD) pattern should be observed over the whole range. Its range, however, recently shifted northward such that northern populations may still be in the process of reaching equilibrium. We investigated variation in IBD patterns, genetic divergence, and allelic richness at six microsatellite markers in 2087 anadromous brook charr from 59 rivers along the most likely postglacial colonization route. We observed a decrease in allelic richness, together with an increase in differentiation and a decrease in IBD in the most recently colonized northern populations, as expected following recent colonization. Contrary to expectation, however, similar patterns were also observed at the southernmost part of the range, despite the fact that these populations are not considered to be newly colonized. We propose that the loss of dispersal capabilities associated with anadromy may have caused the southernmost populations to evolve relatively independently of one another. This study thus demonstrated that changes in a species' geographic range and dispersal capabilities may contribute to shaping geographic patterns of genetic diversity. PMID:12663537

  18. Factors influencing successful eradication of nonnative brook trout from four small Rocky Mountain streams using electrofishing

    USGS Publications Warehouse

    Shepard, Bradley B.; Nelson, Lee M.; Taper, Mark L.; Zale, Alexander V.

    2014-01-01

    We successfully eradicated nonnative Brook Trout Salvelinus fontinalis by electrofishing from 2.4- to 3.0-km treatment reaches of four Rocky Mountain streams in Montana to conserve sympatric populations of native Westslope Cutthroat Trout Oncorhynchus clarkii lewisi. At least 6, and as many as 14, removal treatments of two to four electrofishing passes per treatment were required to successfully eradicate Brook Trout from these treatment reaches. We increased success by modifying our treatment efforts during this study from single annual treatments to several treatments a year to take advantage of autumn spawning and winter aggregating behavior. Eradication by electrofishing cost US \\$3,500 to \\$5,500 per kilometer where no riparian vegetation or woody debris clearing was necessary, increasing to \\$8,000 to \\$9,000 per kilometer where clearing was needed. Treatment costs without stream clearing were similar to costs of eradication using piscicides. Eradication by electrofishing may be preferable where native fish occur in sympatry with nonnative fish in smaller streams (base flow wetted widths

  19. Complete mitochondrial genomes of Korean lamprey (Lethenteron morii) and American brook lamprey (L. appendix).

    PubMed

    Pu, Jiafei; Ren, Jianfeng; Zhang, Zhe; Jia, Liang; Buchinger, Tyler; Li, Weiming

    2016-05-01

    The complete mitogenomes of two lampreys with complex taxonomic histories, the Korean lamprey (Lethenteron morii) and the American brook lamprey (L. appendix) were determined. Three-nt length difference between two genomes occurred on tRNA-Ser2 and control region 2. Except for 3 indel sites, there are 58 variable sites between two genomes which occurred on 11 of the 13 protein-coding genes (aside from COX3 and ND3) and 2 of rRNAs, tRNAs, control regions and intergenic regions. Among these sites, 15 sites are non-synonymous substitution sites occurred on 8 protein-coding genes including COX1-COX2, ND1-ND2, ND4-ND6 and ATPase6. Control region 1 contains 4 consecutive 39-nt repetitive strings and a 26-nt repetitive string in control region 2 is repeated 3.8 times in both lampreys. The observed level of similarity between nucleotide sequences (99.62%) implies the Korean lamprey and American brook lamprey are very close relatives and should be assigned into the same taxonomic genus.

  20. Plant communities as indicators of salt marsh hydrology A study at Goose Fare Brook, Saco, Maine

    SciTech Connect

    Millette, P.M. . Dept. of Geological Sciences)

    1993-03-01

    Salt marsh stratigraphy often relies on vegetation fragment distribution as an indicator of paleo-sea level. This study is attempting to validate the use of Spartina alterniflora and Spartina patens at Goose Fare Brook in Saco, Maine as paleo-sea level indicators. Plant zones were mapped and each zone boundary was surveyed to describe the relationship between sea level and plant species zonation. Data showing the contact elevations between S. patens and S. alterniflora were examined, and contacts from different environments in the marsh were compared. Differences in contact elevations ranged from only a few centimeters to more than eighty centimeters. Three series of groundwater monitoring wells were installed along transects. Within a single transect, one well was placed in the creek bottom, measuring the free water surface, and one was placed at each of several plant zone boundaries. Strip chart recordings from one series of monitoring wells show the flood dominated patterns of tidally influenced groundwater fluctuations in the wells. Root depths of 100 plugs each of S. alterniflora and S. patens were also measured. A comparison of these measurements and those from monitoring wells will assist in the determination of the average length of submergence time for each species. Preliminary findings suggest that sea level is not the only force affecting the modern zonation of these two indicator plants in Goose Fare Brook.

  1. GST M1 GENOTYPE INFLUENCES THE SUSCEPTIBILITY OF MEN TO SPERM DNA DAMAGE ASSOCIATED WITH EXPOSURE TO AIR POLLUTION

    EPA Science Inventory

    GSTM1 GENOTYPE INFLUENCES THE SUSCEPTIBILITY OF MEN TO SPERM DNA DAMAGE ASSOCIATED WITH EXPOSURE TO AIR POLLUTION. J. Rubes1, SG Selevan2, R. Sram3, DPEvenson4, SD Perreault5. 1VRI, Brno, CR; 2US EPA/ORD/NCEA, Washington, DC; 3IEM AS CR, Prague, CR; 4SDSU, Brookings, SD; 5US EPA...

  2. NASA's Hydrogen Outpost: The Rocket Systems Area at Plum Brook Station

    NASA Technical Reports Server (NTRS)

    Arrighi, Robert S.

    2016-01-01

    "There was pretty much a general knowledge about hydrogen and its capabilities," recalled former researcher Robert Graham. "The question was, could you use it in a rocket engine? Do we have the technology to handle it? How will it cool? Will it produce so much heat release that we can't cool the engine? These were the questions that we had to address." The National Aeronautics and Space Administration's (NASA) Glenn Research Center, referred to historically as the Lewis Research Center, made a concerted effort to answer these and related questions in the 1950s and 1960s. The center played a critical role transforming hydrogen's theoretical potential into a flight-ready propellant. Since then NASA has utilized liquid hydrogen to send humans and robots to the Moon, propel dozens of spacecraft across the universe, orbit scores of satellite systems, and power 135 space shuttle flights. Rocket pioneers had recognized hydrogen's potential early on, but its extremely low boiling temperature and low density made it impracticable as a fuel. The Lewis laboratory first demonstrated that liquid hydrogen could be safely utilized in rocket and aircraft propulsion systems, then perfected techniques to store, pump, and cleanly burn the fuel, as well as use it to cool the engine. The Rocket Systems Area at Lewis's remote testing area, Plum Brook Station, played a little known, but important role in the center's hydrogen research efforts. This publication focuses on the activities at the Rocket Systems Area, but it also discusses hydrogen's role in NASA's space program and Lewis's overall hydrogen work. The Rocket Systems Area included nine physically modest test sites and three test stands dedicated to liquid-hydrogen-related research. In 1962 Cleveland Plain Dealer reporter Karl Abram claimed, "The rocket facility looks more like a petroleum refinery. Its test rigs sprout pipes, valves and tanks. During the night test runs, excess hydrogen is burned from special stacks in the best

  3. Facing the future: The Swedish Air Force, 1990-2005

    SciTech Connect

    Bitzinger, R.A.

    1993-01-01

    The report examines (1) the current and future state of the Swedish Air Force (SwAF) as it embarks on a major modernization program and (2) the implications that this has or may have both for Swedish defense and for Western security interests. It discusses overall Swedish security policy and defense doctrine and the role that the SwAF plays in Swedish neutrality; the current structure and missions of the SwAF operations, plans, and programs; and the likely impact that future SwAF force structure developments may have on regional security. The study should be of interest to individuals and organizations concerned with Nordic and northern European security issues, with the future of European air forces and aerospace programs, and with NATO planning in response to the evolving security environment in Europe.

  4. Long-term relationships between SO2 and NOx emissions and SO4(2-) and NO3- concentration in bulk deposition at the Hubbard Brook Experimental Forest, NH.

    PubMed

    Likens, Gene E; Buso, Donald C; Butler, Thomas J

    2005-10-01

    A highly significant second-order polynomial relation between SO(2) emissions and SO(4)(2-) concentrations during 1970-2000 (r(2)= 0.80, p= <0.001), and a linear relation between NO(x) and NO(3)(-) concentrations during 1991-2000 (r(2)= 0.67, p= 0.004) in bulk precipitation were found for the Hubbard Brook Experimental Forest, NH based on emissions from a 24 h, back-trajectory determined source area. Earlier periods (1965-1980) for SO(2)ratio SO(4)(2-) and longer periods (1965-2000) for NO(x)ratio NO(3)(-) had poorer linear relations, r(2)= 0.03, p= 0.51 and r(2)= 0.22, p= 0.004, respectively. Methodology by the US Environmental Protection Agency for calculating emissions data during this period has changed significantly and frequently, making trend analysis difficult. Given the large potential for errors in estimating emissions and to a lesser extent, deposition, the robust relations between SO(2) emissions and SO(4)(2-) concentrations in bulk precipitation at the Hubbard Brook Experimental Forest show that careful, long-term measurements from a single monitoring site can provide sound and reasonable data on trends in air pollution.

  5. Effects of iron depletion on CALM-AF10 leukemias.

    PubMed

    Heath, Jessica L; Weiss, Joshua M; Lavau, Catherine P; Wechsler, Daniel S

    2014-12-01

    Iron, an essential nutrient for cellular growth and proliferation, enters cells via clathrin-mediated endocytosis. The clathrin assembly lymphoid myeloid (CALM) protein plays an essential role in the cellular import of iron by clathrin-mediated endocytosis. CALM-AF10 leukemias harbor a single copy of the normal CALM gene and therefore may be more sensitive to the growth-inhibitory effect of iron restriction compared with normal hematopoietic cells. We found that CALM heterozygous (CALM(HET)) murine fibroblasts exhibit signs of iron deficiency, with increased surface transferrin receptor levels and reduced growth rates. CALM(HET) hematopoietic cells are more sensitive in vitro to iron chelators than their wild type counterparts. Iron chelation also displayed toxicity toward cultured CALM(HET)CALM-AF10 leukemia cells, and this effect was additive to that of chemotherapy. In mice transplanted with CALM(HET)CALM-AF10 leukemia, we found that dietary iron restriction reduced tumor burden in the spleen. However, dietary iron restriction, used alone or in conjunction with chemotherapy, did not increase survival of mice with CALM(HET)CALM-AF10 leukemia. In summary, although CALM heterozygosity results in iron deficiency and increased sensitivity to iron chelation in vitro, our data in mice do not suggest that iron depletion strategies would be beneficial for the therapy of CALM-AF10 leukemia patients.

  6. Genetic structure and diversity among brook trout from Isle Royale, Lake Nipigon, and three Minnesota tributaries of Lake Superior

    USGS Publications Warehouse

    Stott, Wendylee; Quinlan, Henry R.; Gorman, Owen T.; King, Timothy L.

    2010-01-01

    Brook trout Salvelinus fontinalis from Isle Royale, Michigan, three Minnesota tributaries of Lake Superior, and Lake Nipigon in Ontario were analyzed for genetic variation at 12 microsatellite DNA loci. Analysis of molecular variance, genetic distance measures, and cluster analysis were used to examine the diversity, gene flow, and relatedness among the samples. The diversity estimates for the samples from Isle Royale were similar to those for the samples collected from Minnesota tributaries of Lake Superior, and all estimates were lower than those reported in other studies of brook trout from eastern North America. Genetic differences were detected among the brook trout at Isle Royale, Lake Nipigon, and the Minnesota tributaries of Lake Superior. Further, the population in Tobin Harbor at the eastern end of Isle Royale was distinct from the populations from tributaries at the southwestern end of the island. The Minnesota tributary population formed a group that was genetically distinct from those from Isle Royale and Lake Nipigon. The Isle Royale population should be managed to preserve the genetic and phenotypic variation that distinguishes it from the other brook trout populations analyzed to date.

  7. SEX-LINKED CHANGES IN PHASE 1 BIOTRANSFORMATION OF PHENOL IN BROOK TROUT OVER AN ANNUAL REPRODUCTIVE CYCLE

    EPA Science Inventory

    The microsomal metabolism of phenol (11 degrees C) over an annual reproductive cycle from June to December has been studied using fall spawning adult brook trout (Salvelinus fontinalis). Incubations were optimized for time, cofactor connection, pH, and microsomal protein concentr...

  8. The Stories of Nico and Brooke Revisited: Toward a Cross-Disciplinary Dialogue about Teaching and Learning

    ERIC Educational Resources Information Center

    Immordino-Yang, Mary Helen

    2008-01-01

    In "A tale of two cases: Lessons for education from the study of two boys living with half their brains" (M. H. Immordino-Yang, 2007), I showed that Nico (missing his right cerebral hemisphere) and Brooke (missing his left) had compensated for basic neuropsychological skills to previously unexpected degrees and argued that the ways they had…

  9. Examining Scientific and Technical Writing Strategies in the 11th Century Chinese Science Book "Brush Talks from Dream Brook"

    ERIC Educational Resources Information Center

    Zhang, Yuejiao

    2013-01-01

    This article examines the influential Chinese science book "Brush Talks from Dream Brook," written by Shen Kuo in the 11th century. I suggest that "Brush Talks" reveals a tension between institutionalized science and science in the public, and a gap between the making of scientific knowledge and the communication of such…

  10. Genetic identity of brook trout in Lake Superior south shore streams: Potential for genetic monitoring of stocking and rehabilitation efforts

    USGS Publications Warehouse

    Sloss, Brian L.; Jennings, Martin J.; Franckowiak, R.; Pratt, D.M.

    2008-01-01

    Rehabilitation of migratory ('coaster') brook trout Salvelinus fontinalis along Lake Superior's south shore is a topic of high interest among resource stakeholders and management agencies. Proposed strategies for rehabilitation of this brook trout life history variant in Wisconsin include supplemental stocking, watershed management, habitat rehabilitation, harvest regulations, or a combination thereof. In an effort to evaluate the success of coaster brook trout rehabilitation efforts, we collected genetic data from four populations of interest (Whittlesey Creek, Bois Brule River, Bark River, and Graveyard Creek) and the hatchery sources used in the Whittlesey Creek supplementation experiment. We characterized the genetic diversity of 30 individuals from each of four populations using 13 microsatellite DNA loci. Levels of genetic variation were consistent with those in similar studies conducted throughout the basin. Significant genetic variation among the populations was observed, enabling adequate population delineation through assignment tests. Overall, 208 of the 211 sampled fish (98.6%) were correctly assigned to their population of origin. Simulated F1 hybrids between two hatchery strains and the Whittlesey Creek population were identifiable in the majority of attempts (90.5-100% accuracy with 0-2.5% error). The genetic markers and analytical techniques described provide the ability to monitor the concurrent coaster brook trout rehabilitation efforts along Wisconsin's Lake Superior south shore, including the detection of hybridization between hatchery and native populations. ?? Copyright by the American Fisheries Society 2008.

  11. Media Literacy, News Literacy, or News Appreciation? A Case Study of the News Literacy Program at Stony Brook University

    ERIC Educational Resources Information Center

    Fleming, Jennifer

    2014-01-01

    This case study provides practical and theoretical insights into the Stony Brook news literacy program, which is one of the most ambitious and well-funded curricular experiments in modern journalism education and media literacy. Analysis of document, interview, and observation data indicates that news literacy educators sought to teach students…

  12. What Do Facts Have to Do with It? Exploring Instructional Emphasis in Stony Brook News Literacy Curriculum

    ERIC Educational Resources Information Center

    Fleming, Jennifer

    2015-01-01

    An analytic matrix comprised of multiple media literacy teaching and learning principles is conceptualized to examine a model of news literacy developed by journalism educators at Stony Brook University. The multidimensional analysis indicates that news literacy instructors focus on teaching students how to question and assess the veracity of news…

  13. 75 FR 52374 - National Environmental Policy Act; NASA Glenn Research Center Plum Brook Station Wind Farm Project

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-25

    ... Wind Farm Project AGENCY: National Aeronautics and Space Administration. ACTION: Notice of Intent to... GRC Plum Brook Station Wind Farm Project located near Sandusky, Ohio, pursuant to the National... and operation of the wind farm. The purpose of constructing and operating the wind farm is for NASA...

  14. Performance Characterization of Influent and Effluent Treatment Systems: A Case Study at Craig Brook National Fish Hatchery

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study characterizes the performance of influent and effluent disinfection systems at Craig Brook National Fish Hatchery, a U.S. Fish and Wildlife Service (USFWS) Atlantic salmon (Salmo salar) restoration facility in East Orland, ME. Influent treatment of the hatchery’s water supply limits fish ...

  15. On Conceptual Metaphor and the Flora and Fauna of Mind: Commentary on Brookes and Etkina; and Jeppsson, Haglund, and Amin

    ERIC Educational Resources Information Center

    Sherin, Bruce

    2015-01-01

    In this commentary, the author presents his thoughts on two papers appearing in this special issue. The first, "The Importance of Language in Students' Reasoning about Heat in Thermodynamic Processes," by David T. Brookes and Eugenia Etkina (See: EJ1060728), and the second, "Varying Use of Conceptual Metaphors Across Levels of…

  16. Brief Report: Stony Brook Guidelines on the Ethics of the Care of People with Autism and Their Families

    ERIC Educational Resources Information Center

    Post, Stephen G.; Pomeroy, John; Keirns, Carla C.; Cover, Virginia Isaacs; Dorn, Michael Leverett; Boroson, Louis; Boroson, Florence; Coulehan, Anne; Coulehan, Jack; Covell, Kim; Kubasek, Kim; Luchsinger, Elizabeth; Nichols, Shana; Parles, James; Schreiber, Linda; Tetenbaum, Samara P.; Walsh, Rose Ann

    2013-01-01

    The increased prevalence of autism spectrum disorders (ASD), with associated societal and clinical impacts, calls for a broad community-based dialogue on treatment related ethical and social issues. The Stony Brook Guidelines, based on a community dialogue process with affected individuals, families and professionals, identify and discuss the…

  17. Growth of a Science Center: The Center for Science and Mathematics Education (CESAME) at Stony Brook University

    ERIC Educational Resources Information Center

    Gafney, Leo; Bynum, R. David; Sheppard, Keith

    2015-01-01

    This report describes the origin and development of CESAME (The Center for Science and Mathematics Education) at Stony Brook University. The analysis identifies key ingredients in areas of personnel, funding, organizational structures, educational priorities, collaboration, and institutionalization. After a discussion of relevant issues in…

  18. Drought-induced stomatal closure probably cannot explain divergent white spruce growth in the Brooks Range, Alaska, USA.

    PubMed

    Brownlee, Annalis H; Sullivan, Patrick F; Csank, Adam Z; Sveinbjörnsson, Bjartmar; Ellison, Sarah B Z

    2016-01-01

    Increment cores from the boreal forest have long been used to reconstruct past climates. However, in recent years, numerous studies have revealed a deterioration of the correlation between temperature and tree growth that is commonly referred to as divergence. In the Brooks Range of northern Alaska, USA, studies of white spruce (Picea glauca) revealed that trees in the west generally showed positive growth trends, while trees in the central and eastern Brooks Range showed mixed and negative trends during late 20th century warming. The growing season climate of the eastern Brooks Range is thought to be drier than the west. On this basis, divergent tree growth in the eastern Brooks Range has been attributed to drought stress. To investigate the hypothesis that drought-induced stomatal closure can explain divergence in the Brooks Range, we synthesized all of the Brooks Range white spruce data available in the International Tree Ring Data Bank (ITRDB) and collected increment cores from our primary sites in each of four watersheds along a west-to-east gradient near the Arctic treeline. For cores from our sites, we measured ring widths and calculated carbon isotope discrimination (δ13C), intrinsic water-use efficiency (iWUE), and needle intercellular CO2 concentration (C(i)) from δ13C in tree-ring alpha-cellulose. We hypothesized that trees exhibiting divergence would show a corresponding decline in δ13C, a decline in C(i), and a strong increase in iWUE. Consistent with the ITRDB data, trees at our western and central sites generally showed an increase in the strength of the temperature-growth correlation during late 20th century warming, while trees at our eastern site showed strong divergence. Divergent tree growth was not, however, associated with declining δ13C. Meanwhile, estimates of C(i) showed a strong increase at all of our study sites, indicating that more substrate was available for photosynthesis in the early 21st than in the early 20th century. Our

  19. Drought-induced stomatal closure probably cannot explain divergent white spruce growth in the Brooks Range, Alaska, USA.

    PubMed

    Brownlee, Annalis H; Sullivan, Patrick F; Csank, Adam Z; Sveinbjörnsson, Bjartmar; Ellison, Sarah B Z

    2016-01-01

    Increment cores from the boreal forest have long been used to reconstruct past climates. However, in recent years, numerous studies have revealed a deterioration of the correlation between temperature and tree growth that is commonly referred to as divergence. In the Brooks Range of northern Alaska, USA, studies of white spruce (Picea glauca) revealed that trees in the west generally showed positive growth trends, while trees in the central and eastern Brooks Range showed mixed and negative trends during late 20th century warming. The growing season climate of the eastern Brooks Range is thought to be drier than the west. On this basis, divergent tree growth in the eastern Brooks Range has been attributed to drought stress. To investigate the hypothesis that drought-induced stomatal closure can explain divergence in the Brooks Range, we synthesized all of the Brooks Range white spruce data available in the International Tree Ring Data Bank (ITRDB) and collected increment cores from our primary sites in each of four watersheds along a west-to-east gradient near the Arctic treeline. For cores from our sites, we measured ring widths and calculated carbon isotope discrimination (δ13C), intrinsic water-use efficiency (iWUE), and needle intercellular CO2 concentration (C(i)) from δ13C in tree-ring alpha-cellulose. We hypothesized that trees exhibiting divergence would show a corresponding decline in δ13C, a decline in C(i), and a strong increase in iWUE. Consistent with the ITRDB data, trees at our western and central sites generally showed an increase in the strength of the temperature-growth correlation during late 20th century warming, while trees at our eastern site showed strong divergence. Divergent tree growth was not, however, associated with declining δ13C. Meanwhile, estimates of C(i) showed a strong increase at all of our study sites, indicating that more substrate was available for photosynthesis in the early 21st than in the early 20th century. Our

  20. Context-specific influence of water temperature on brook trout growth rates in the field

    USGS Publications Warehouse

    Xu, C.; Letcher, B.H.; Nislow, K.H.

    2010-01-01

    1. Modelling the effects of climate change on freshwater fishes requires robust field-based estimates accounting for interactions among multiple factors.2. We used data from an 8-year individual-based study of a wild brook trout (Salvelinus fontinalis) population to test the influence of water temperature on season-specific growth in the context of variation in other environmental (i.e. season, stream flow) or biotic factors (local brook trout biomass density and fish age and size) in West Brook, a third-order stream in western Massachusetts, U.S.A.3. Changes in ambient temperature influenced individual growth rates. In general, higher temperatures were associated with higher growth rates in winter and spring and lower growth rates in summer and autumn. However, the effect of temperature on growth was strongly context-dependent, differing in both magnitude and direction as a function of season, stream flow and fish biomass density.4. We found that stream flow and temperature had strong and complex interactive effects on trout growth. At the coldest temperatures (in winter), high stream flows were associated with reduced trout growth rates. During spring and autumn and in typical summers (when water temperatures were close to growth optima), higher flows were associated with increased growth rates. In addition, the effect of flow at a given temperature (the flow-temperature interaction) differed among seasons.5. Trout density negatively affected growth rate and had strong interactions with temperature in two of four seasons (i.e. spring and summer) with greater negative effects at high temperatures.6. Our study provided robust, integrative field-based estimates of the effects of temperature on growth rates for a species which serves as a model organism for cold-water adapted ectotherms facing the consequences of environmental change. Results of the study strongly suggest that failure to derive season-specific estimates, or to explicitly consider interactions with

  1. Mortality of brook trout, mottled sculpins, and slimy sculpins during acidic episodes

    SciTech Connect

    Gagen, C.J.; Sharpe, W.E.; Carline, R.F. )

    1993-07-01

    Brook trout Salvelinus fontinalis, mottled sculpins Cottus bairdi, and slimy sculpins Cottus cognatus occur in many Pennsylvania streams that have depressed pH and elevated aluminum concentrations during episodes of high stream discharge (acidic episodes). We performed 20-d in situ cage exposures with these species to determine their relative sensitivities to field conditions. We also exposed fish in the laboratory to synthetic soft water, without added Al, to elevate possible effects of Al on sodium flux rates and pH toxicity. Exposures were in five streams: two with high pH (>5.60) and low Al concentrations (<80 [mu]g/L) and three with low pH (usually between 5.0 and 5.5) and high Al levels (124-294 [mu]g/L). Exposures were during two low-discharge fall periods, when pH tends to be seasonally higher and Al concentrations lower, and two relatively high-discharge spring seasons, when lower pH and higher Al concentrations are typical. Few fish died (generally <10%) in the two streams that had higher pH and lower al concentrations, whereas mortalities typically exceeded 20% and were as high as 100% during spring exposures in the streams with lower pH and elevated Al concentrations. All three species had higher mortality rates in spring, 20-100%, than in fall, 0-29%. Mottled sculpins and slimy sculpins had similar mortality rates and both had lower mortality rates than brook trout when exposed to similar conditions. We compared Na flux rates of mottled sculpins to those of brook trout in laboratory exposures at pH 4.0, 5.0, and 6.0 to determine if low pH alone could account for mortality rates in the field. Because Na flux rates at pH 5.0, without added Al, were similar to flux rates of the controls for both species, high Al levels were believed to have contributed to the increased mortality observed in streams. 44 refs., 7 figs., 3 tabs.

  2. Deformation and the timing of gas generation and migration in the eastern Brooks Range foothills, Arctic National Wildlife Refuge, Alaska

    USGS Publications Warehouse

    Parris, T.M.; Burruss, R.C.; O'Sullivan, P. B.

    2003-01-01

    Along the southeast border of the 1002 Assessment Area in the Arctic National Wildlife Refuge, Alaska, an explicit link between gas generation and deformation in the Brooks Range fold and thrust belt is provided through petrographic, fluid inclusion, and stable isotope analyses of fracture cements integrated with zircon fission-track data. Predominantly quartz-cemented fractures, collected from thrusted Triassic and Jurassic rocks, contain crack-seal textures, healed microcracks, and curved crystals and fluid inclusion populations, which suggest that cement growth occurred before, during, and after deformation. Fluid inclusion homogenization temperatures (175-250??C) and temperature trends in fracture samples suggest that cements grew at 7-10 km depth during the transition from burial to uplift and during early uplift. CH4-rich (dry gas) inclusions in the Shublik Formation and Kingak Shale are consistent with inclusion entrapment at high thermal maturity for these source rocks. Pressure modeling of these CH4-rich inclusions suggests that pore fluids were overpressured during fracture cementation. Zircon fission-track data in the area record postdeposition denudation associated with early Brooks Range deformation at 64 ?? 3 Ma. With a closure temperature of 225-240??C, the zircon fission-track data overlap homogenization temperatures of coeval aqueous inclusions and inclusions containing dry gas in Kingak and Shublik fracture cements. This critical time-temperature relationship suggests that fracture cementation occurred during early Brooks Range deformation. Dry gas inclusions suggest that Shublik and Kingak source rocks had exceeded peak oil and gas generation temperatures at the time structural traps formed during early Brooks Range deformation. The timing of hydrocarbon generation with respect to deformation therefore represents an important exploration risk for gas exploration in this part of the Brooks Range fold and thrust belt. The persistence of gas high at

  3. GPIM AF-M315E Propulsion System

    NASA Technical Reports Server (NTRS)

    Spores, Ronald A.; Masse, Robert; Kimbrel, Scott; McLean, Chris

    2014-01-01

    The NASA Space Technology mission Directorate's (STMD) Green Propellant Infusion Mission (GPIM) Technology Demonstration Mission (TDM) will demonstrate an operational AF-M315E green propellant propulsion system. Aerojet-Rocketdyne is responsible for the development of the propulsion system payload. This paper statuses the propulsion system module development, including thruster design and system design; Initial test results for the 1N engineering model thruster are presented. The culmination of this program will be high-performance, green AF-M315E propulsion system technology at TRL 7+, with components demonstrated to TRL 9, ready for direct infusion to a wide range of applications for the space user community.

  4. Total mitochondrial genome of mantis shrimp, Squilloides leptosquilla (Brooks, 1886) (Crustacea: Stomatopoda: Squillidae) in Korean waters.

    PubMed

    Kang, Hye-Eun; Kim, Jung Nyun; Yoon, Tae-Ho; Park, Kyeong Dong; Park, Won Gyu; Park, Hyun; Kim, Hyun Woo

    2016-07-01

    We characterized the complete mitochondrial genome of Squilloides leptosquilla (Brooks, 1886) collected from the southern waters of Korea, which is newly recorded into the Korean carcinological fauna. The total mitochondrial genome length of S. leptosquilla was 16,376 bp. This circular DNA encodes 13 proteins, two ribosomal RNAs, and 22 transfer RNAs, as well as a putative control region. Compared with other decapod crustacean mitochondrial genomes, the overall A + T content was relatively high (71.1%) as those among other stomatopod species. Nine and four protein-coding genes are encoded on the H-strand and on the L-strand, respectively. The short non-coding region (210 bp) between tRNA(Glu) and tRNA(Phe) may be the good candidate as the molecular marker to discriminate S. leptosequilla from other stomatopods.

  5. Hydrography and population genetic structure in brook charr (Salvelinus fontinalis, Mitchill) from eastern Canada.

    PubMed

    Hébert, C; Danzman, R G; Jones, M W; Bernatchez, L

    2000-07-01

    Despite the abundance of studies of genetic diversity in freshwater fishes, few have specifically addressed the role of habitat structure in partitioning genetic variance within and among populations. In this study, we analysed the variability of six microsatellite loci among 24 brook charr population samples in order to correlate hydrographic structure with genetic organization. These populations originated from three Canadian National parks (Kouchibouguac, Fundy and Forillon) that showed distinct hydrographic structure. Considering the general characteristics of these habitats, we formulated specific hypotheses in regard to genetic structure, which were principally based on the potential for gene flow and population size associated with each habitat. The hierarchical analysis of molecular variance and the genetic distances computed among populations revealed that habitat structure analyses constitute an important, but insufficient, predictor of genetic structure. We discuss the importance of habitat complexity on genetic structure in the context of management and conservation.

  6. Stream ecosystem response to chronic deposition of N and acid at the Bear Brook Watershed, Maine.

    PubMed

    Simon, Kevin S; Chadwick, Michael A; Huryn, Alexander D; Valett, H Maurice

    2010-12-01

    The Bear Brook Watershed in Maine (BBWM) is a long-term, paired watershed experiment that addresses the effects of acid and nitrogen (N) deposition on whole watersheds. To examine stream response at BBWM, we synthesized data on organic matter dynamics, including leaf breakdown rates, organic matter inputs and standing stocks, macroinvertebrate secondary production, and nutrient uptake in treated and reference streams at the BBWM. While N concentrations in stream water and leaves have increased, the input, standing stocks, and breakdown rates of leaves, as well as macroinvertebrate production, were not responsive to acid and N deposition. Both chronic and acute increases of N availability have saturated uptake of nitrate in the streams. Recent experimental increases in phosphorus (P) availability enhanced stream capacity to take up nitrate and altered the character of N saturation. These results show how the interactive effects of multiple factors, including environmental flow regime, acidification, and P availability, may constrain stream response to chronic N deposition.

  7. Restoration of the Hypersonic Tunnel Facility at NASA Glenn Research Center, Plum Brook Station

    NASA Technical Reports Server (NTRS)

    Woodling, Mark A.

    2000-01-01

    The NASA Glenn Research Center's Hypersonic Tunnel Facility (HTF), located at the Plum Brook Station in Sandusky, Ohio, is a non-vitiated, free-jet facility, capable of testing large-scale propulsion systems at Mach Numbers from 5 to 7. As a result of a component failure in September of 1996, a restoration project was initiated in mid- 1997 to repair the damage to the facility. Following the 2-1/2 year effort, the HTF has been returned to an operational condition. Significant repairs and operational improvements have been implemented in order to ensure facility reliability and personnel safety. As of January 2000, this unique, state-of-the-art facility was ready for integrated systems testing.

  8. Concomitant Antibiotic and Mercury Resistance Among Gastrointestinal Microflora of Feral Brook Trout, Salvelinus fontinalis

    PubMed Central

    Meredith, Matthew M.; Parry, Erin M.; Guay, Justin A.; Markham, Nicholas O.; Danner, G. Russell; Johnson, Keith A.; Barkay, Tamar; Fekete, Frank A.

    2013-01-01

    Twenty-nine bacterial isolates representing eight genera from the gastrointestinal tracts of feral brook trout Salvelinus fontinalis (Mitchell) demonstrated multiple maximal antibiotic resistances and concomitant broad-spectrum mercury (Hg) resistance. Equivalent viable plate counts on tryptic soy agar supplemented with either 0 or 25 μM HgCl2 verified the ubiquity of mercury resistance in this microbial environment. Mercury levels in lake water samples measured 1.5 ng L−1; mercury concentrations in fish filets ranged from 81.8 to 1,080 ng g−1 and correlated with fish length. The presence of similar antibiotic and Hg resistance patterns in multiple genera of gastrointestinal microflora supports a growing body of research that multiple selective genes can be transferred horizontally in the presence of an unrelated individual selective pressure. We present data that bioaccumulation of non-point source Hg pollution could be a selective pressure to accumulate both antibiotic and Hg resistant bacteria. PMID:22850694

  9. Total mitochondrial genome of mantis shrimp, Squilloides leptosquilla (Brooks, 1886) (Crustacea: Stomatopoda: Squillidae) in Korean waters.

    PubMed

    Kang, Hye-Eun; Kim, Jung Nyun; Yoon, Tae-Ho; Park, Kyeong Dong; Park, Won Gyu; Park, Hyun; Kim, Hyun Woo

    2016-07-01

    We characterized the complete mitochondrial genome of Squilloides leptosquilla (Brooks, 1886) collected from the southern waters of Korea, which is newly recorded into the Korean carcinological fauna. The total mitochondrial genome length of S. leptosquilla was 16,376 bp. This circular DNA encodes 13 proteins, two ribosomal RNAs, and 22 transfer RNAs, as well as a putative control region. Compared with other decapod crustacean mitochondrial genomes, the overall A + T content was relatively high (71.1%) as those among other stomatopod species. Nine and four protein-coding genes are encoded on the H-strand and on the L-strand, respectively. The short non-coding region (210 bp) between tRNA(Glu) and tRNA(Phe) may be the good candidate as the molecular marker to discriminate S. leptosequilla from other stomatopods. PMID:26176982

  10. Do native brown trout and non-native brook trout interact reproductively?

    NASA Astrophysics Data System (ADS)

    Cucherousset, J.; Aymes, J. C.; Poulet, N.; Santoul, F.; Céréghino, R.

    2008-07-01

    Reproductive interactions between native and non-native species of fish have received little attention compared to other types of interactions such as predation or competition for food and habitat. We studied the reproductive interactions between non-native brook trout ( Salvelinus fontinalis) and native brown trout ( Salmo trutta) in a Pyrenees Mountain stream (SW France). We found evidence of significant interspecific interactions owing to consistent spatial and temporal overlap in redd localizations and spawning periods. We observed mixed spawning groups composed of the two species, interspecific subordinate males, and presence of natural hybrids (tiger trout). These reproductive interactions could be detrimental to the reproduction success of both species. Our study shows that non-native species might have detrimental effects on native species via subtle hybridization behavior.

  11. Structural geology of the Big Bend anticline, Brooks Range Foothills, Alaska

    NASA Astrophysics Data System (ADS)

    Sanders, Cheryl M.

    Big Bend anticline is near the northern edge of the Brooks Range foothills of northern Alaska. The structure of the foothills is a low-taper triangle zone or passive-roof duplex within Brooks Range foreland basin deposits. The dominant structures are detachment folds locally cut by thrust faults and Big Bend anticline is one of these. This research combines detailed surface mapping (1:25,000) with interpretation of aerial photos and satellite imagery of the Big Bend anticline and seismic reflection data from the Umiat anticline to reconstruct its surface and subsurface geometry. The research area surrounds the Big Bend of the Chandler River and covers approximately 10 km2. The mechanical stratigraphy of the area consists of the competent Nanushuk sandstones between two incompetent units-the overlying Seabee and underlying Torok shales. The structure of the area consists of an east-trending anticline with a hinge that branches westward into two open, broad anticlines and an intervening syncline. A forethrust near the southern hinge and a backthrust near the northern hinge have broken through the anticline west of the branch point. Subsurface data of Umiat anticline combined with surface projected cross sections from the study area provide an analog of the subsurface structure in the Big Bend area. These cross sections show gentle anticlines separated by flat bottomed synclines in competent Nanushuk Formation sandstone. The anticlines overly Torok Formation thickened by north vergent folds and thrust faults above a detachment zone. Collectively, these structures form a low-taper triangle zone. Cross section restoration suggests more shortening in the Torok duplex than in the overlying folds and breakthrough faults. Results of this research provide an analog for other anticlines in the region that are currently the focus of oil and gas exploration.

  12. Neocomian source and reservoir rocks in the western Brooks Range and Arctic Slope, Alaska

    SciTech Connect

    Mull, C.G.; Reifenstuhl, R.R.; Harris, E.E.; Crowder, R.K.

    1995-04-01

    Detailed (1:63,360) mapping of the Tingmerkpuk sandstone and associated rocks in the Misheguk Mountain and DeLong Mountains guadrangles of the western Brooks Range thrust belt documents potential hydrocarbon source and reservoir rocks in the northern foothills of the western Delong Mountains and adjacent Colville basin of northwest Alaska. Neocomian (?) to Albian micaceous shale, litharenite, and graywacke that overlies the Tingmerkpuk represents the onset of deposition of orogenic sediments derived from the Brooks Range to the south, and the merging of northern and southern sediment sources in the Colville basin. Both the proximal and distal Tingmerkpuk facies contain clay shale interbeds and overlie the Upper Jurassic to Neocomian Kingak Shale. Preliminary geochemical data show that in the thrust belt, these shales are thermally overmature (Ro 1.4-1.6), but are good source rocks with total organic content (TOC) that ranges from 1.2 to 1.8 percent. Shale in the overlying Brookian rocks is also thermally overmature (Ro 1.2-1.5 percent), but contains up to 1.8 percent TOC from a dominantly terrigenous source, and has generated gas. In outcrops at Surprise Creek, in the foothills north of the thrust belt, the Kingak (1.9 percent TOC) and underlying Triassic Shublik Formation (4.6 percent TOC) are excellent oil source rocks with thermal maturity close to peak oil generation stage (Ro0.75-0.9 percent). These rocks have lower thermal maturity values than expected for their stratigraphic position within the deeper parts of the Colville basin and indicate anomalous burial and uplift history in parts of the basin. Preliminary apatite fission-track (AFTA) data from the thrust belt indicate a stage of rapid uplift and cooling at about 53.61 Ma.

  13. The Wageningen Lowland Runoff Simulator (WALRUS): application to the Hupsel Brook catchment and Cabauw polder

    NASA Astrophysics Data System (ADS)

    Brauer, C. C.; Torfs, P. J. J. F.; Teuling, A. J.; Uijlenhoet, R.

    2014-02-01

    The Wageningen Lowland Runoff Simulator (WALRUS) is a new parametric (conceptual) rainfall-runoff model which accounts explicitly for processes that are important in lowland areas, such as groundwater-unsaturated zone coupling, wetness-dependent flowroutes, groundwater-surface water feedbacks, and seepage and surface water supply (see companion paper by Brauer et al., 2014). Lowland catchments can be divided into slightly sloping, freely draining catchments and flat polders with controlled water levels. Here, we apply WALRUS to two contrasting Dutch catchments: the Hupsel Brook catchment and Cabauw polder. In both catchments, WALRUS performs well: Nash-Sutcliffe efficiencies obtained after calibration on one year of discharge observations are 0.87 for the Hupsel Brook catchment and 0.83 for the Cabauw polder, with values of 0.74 and 0.76 for validation. The model also performs well during floods and droughts and can forecast the effect of control operations. Through the dynamic division between quick and slow flowroutes controlled by a wetness index, temporal and spatial variability in groundwater depths can be accounted for, which results in adequate simulation of discharge peaks as well as low flows. The performance of WALRUS is most sensitive to the parameter controlling the wetness index and the groundwater reservoir constant, and to a lesser extent to the quickflow reservoir constant. The effects of these three parameters can be identified in the discharge time series, which indicates that the model is not overparameterised (parsimonious). Forcing uncertainty was found to have a larger effect on modelled discharge than parameter uncertainty and uncertainty in initial conditions.

  14. The Wageningen Lowland Runoff Simulator (WALRUS): application to the Hupsel Brook catchment and the Cabauw polder

    NASA Astrophysics Data System (ADS)

    Brauer, C. C.; Torfs, P. J. J. F.; Teuling, A. J.; Uijlenhoet, R.

    2014-10-01

    The Wageningen Lowland Runoff Simulator (WALRUS) is a new parametric (conceptual) rainfall-runoff model which accounts explicitly for processes that are important in lowland areas, such as groundwater-unsaturated zone coupling, wetness-dependent flowroutes, groundwater-surface water feedbacks, and seepage and surface water supply (see companion paper by Brauer et al., 2014). Lowland catchments can be divided into slightly sloping, freely draining catchments and flat polders with controlled water levels. Here, we apply WALRUS to two contrasting Dutch catchments: the Hupsel Brook catchment and the Cabauw polder. In both catchments, WALRUS performs well: Nash-Sutcliffe efficiencies obtained after calibration on 1 year of discharge observations are 0.87 for the Hupsel Brook catchment and 0.83 for the Cabauw polder, with values of 0.74 and 0.76 for validation. The model also performs well during floods and droughts and can forecast the effect of control operations. Through the dynamic division between quick and slow flowroutes controlled by a wetness index, temporal and spatial variability in groundwater depths can be accounted for, which results in adequate simulation of discharge peaks as well as low flows. The performance of WALRUS is most sensitive to the parameter controlling the wetness index and the groundwater reservoir constant, and to a lesser extent to the quickflow reservoir constant. The effects of these three parameters can be identified in the discharge time series, which indicates that the model is not overparameterised (parsimonious). Forcing uncertainty was found to have a larger effect on modelled discharge than parameter uncertainty and uncertainty in initial conditions.

  15. Effects of dam removal on brook trout in a Wisconsin stream

    USGS Publications Warehouse

    Stanley, E.H.; Catalano, M.J.; Mercado-Silva, N.; Orr, C.H.

    2007-01-01

    Dams create barriers to fish migration and dispersal in drainage basins, and the removal of dams is often viewed as a means of increasing habitat availability and restoring migratory routes of several fish species. However, these barriers can also isolate and protect native taxa from aggressive downstream invaders. We examined fish community composition two years prior to and two years after the removal of a pair of low-head dams from Boulder Creek, Wisconsin, U.S.A. in 2003 to determine if removal of these potential barriers affected the resident population of native brook trout (Salvelinus fontinalis). Despite the presence of other taxa in the downstream reaches, and in other similar streams adjacent to the Boulder Creek (including the brown trout, Salmo trutta), no new species had colonized the Boulder Creek in the two years following dam removal. The adults catch per unit effort (CPUE) was lower and the young-of-the-year catch per unit effort (YOY CPUE) was higher in 2005 than in 2001 in all reaches, but the magnitude of these changes was substantially larger in the two dam-affected sample reaches relative to an upstream reference reach, indicating a localized effect of the removal. Total length of the adults and the YOY and the adult body condition did not vary between years or among reaches. Thus, despite changes in numbers of adults and the YOYs in some sections of the stream, the lack of new fish species invading Boulder Creek and the limited extent of population change in brook trout indicate that dam removal had a minor effect on these native salmonids in the first two years of the post-removal. Copyright ?? 2007 John Wiley & Sons, Ltd.

  16. Changes in seasonal climate outpace compensatory density-dependence in eastern brook trout

    USGS Publications Warehouse

    Bassar, Ronald D.; Letcher, Benjamin H.; Nislow, Keith H.; Whiteley, Andrew R.

    2016-01-01

    Understanding how multiple extrinsic (density-independent) factors and intrinsic (density-dependent) mechanisms influence population dynamics has become increasingly urgent in the face of rapidly changing climates. It is particularly unclear how multiple extrinsic factors with contrasting effects among seasons are related to declines in population numbers and changes in mean body size and whether there is a strong role for density-dependence. The primary goal of this study was to identify the roles of seasonal variation in climate driven environmental direct effects (mean stream flow and temperature) versus density-dependence on population size and mean body size in eastern brook trout (Salvelinus fontinalis). We use data from a 10-year capture-mark-recapture study of eastern brook trout in four streams in Western Massachusetts, USA to parameterize a discrete-time population projection model. The model integrates matrix modeling techniques used to characterize discrete population structures (age, habitat type and season) with integral projection models (IPMs) that characterize demographic rates as continuous functions of organismal traits (in this case body size). Using both stochastic and deterministic analyses we show that decreases in population size are due to changes in stream flow and temperature and that these changes are larger than what can be compensated for through density-dependent responses. We also show that the declines are due mostly to increasing mean stream temperatures decreasing the survival of the youngest age class. In contrast, increases in mean body size over the same period are the result of indirect changes in density with a lesser direct role of climate-driven environmental change.

  17. An evaluation of the precision of fin ray, otolith, and scale age determinations for brook trout

    USGS Publications Warehouse

    Stolarski, J.T.; Hartman, K.J.

    2008-01-01

    The ages of brook trout Salvelinus fontinalis are typically estimated using scales despite a lack of research documenting the effectiveness of this technique. The use of scales is often preferred because it is nonlethal and is believed to require less effort than alternative methods. To evaluate the relative effectiveness of different age estimation methodologies for brook trout, we measured the precision and processing times of scale, sagittal otolith, and pectoral fin ray age estimation techniques. Three independent readers, age bias plots, coefficients of variation (CV = 100 x SD/mean), and percent agreement (PA) were used to measure within-reader, among-structure bias and within-structure, among-reader precision. Bias was generally minimal; however, the age estimates derived from scales tended to be lower than those derived from otoliths within older (age > 2) cohorts. Otolith, fin ray, and scale age estimates were within 1 year of each other for 95% of the comparisons. The measures of precision for scales (CV = 6.59; PA = 82.30) and otoliths (CV = 7.45; PA = 81.48) suggest higher agreement between these structures than with fin rays (CV = 11.30; PA = 65.84). The mean per-sample processing times were lower for scale (13.88 min) and otolith techniques (12.23 min) than for fin ray techniques (22.68 min). The comparable processing times of scales and otoliths contradict popular belief and are probably a result of the high proportion of regenerated scales within samples and the ability to infer age from whole (as opposed to sectioned) otoliths. This research suggests that while scales produce age estimates rivaling those of otoliths for younger (age > 3) cohorts, they may be biased within older cohorts and therefore should be used with caution. ?? Copyright by the American Fisheries Society 2008.

  18. Six month EROD response pattern of dioxin-fed brook trout

    SciTech Connect

    Daniel, F.B.; Cormier, S.; Subramanian, B.; Williams, D.; Torsella, J.; Lech, J.

    1994-12-31

    Brook trout, Salvelinus fontinalis, were fed tritiated-labeled 2,3,7,8-TCDD in two phases, a 5-week loading phase beginning in early July, followed by a maintenance phase lasting until middle October. The loading phase brought the trout to the desired whole-body TCDD concentration. The maintenance phase held the whole-body TCDD level constant during growth and deputation through mid-October. Six treatment groups were defined by the following whole-body TCDD concentrations: 0.0, 75, 150, 300, 600, and 120 pg/g. Hepatic EROD activity was measured fluorometrically at two to three week intervals from July, 1993 through October 1993 and once in January, 1994. In the two highest treatment groups, both males and females had significantly elevated levels of EROD activity and responded in a dose-response fashion. The EROD values for males were significantly higher than for females and their seasonal response patterns were different. For males, the maximum EROD response was maintained from July through January. For females, EROD was elevated from July through September, declined and then increased to the highest levels in January. Results were confirmed by immunoassay of selected microsomes samples for CY1A1 with the specific antipeptide antibody, anti-trout CYP1A1{sup 277-294/KLH} using Western Blots and densitometry to detect any losses in catalytic activity. these data demonstrate the complexity of the EROD response of brook trout to dioxin and suggest that physiological conditions associated with reproduction might affect the EROD response.

  19. Brown bear response to elevated viewing structures at Brooks River, Alaska

    USGS Publications Warehouse

    DeBruyn, T.D.; Smith, T.S.; Proffitt, K.; Partridge, S.; Drummer, T.D.

    2004-01-01

    The increasing popularity of brown bear (Ursus arctos) viewing at Brooks River in Katmai National Park, Alaska has resulted in overcrowded facilities, increasing bear-human conflicts, displacement of bears from important habitats, and degradation of cultural resources. To partially address these issues, the National Park Service (NPS) constructed a 300-m-long elevated boardwalk with interconnected viewing platforms in August 2000. To determine what effects the new structures might have on individual bears, we observed bear movements and behaviors before and after construction. We used direct observations and motion-detection cameras to construct temporal-spatial profiles of bear activity. Although bear numbers were similar (59 bears in 2000 and 56 bears in 2001) and bear activity within the greater Brooks River area did not differ (P = 0.62, n = 29) between the 2 years of this study, trail crossings in the vicinity of the new structures decreased 78% (7,436 crossings in 2000 and 1,646 crossings in 2001; ??2 = 762, df = 14, P < 0.001). Bear temporal use of the boardwalk area changed such that when human use was highest, bear use was proportionally lower in the post- versus pre-construction phase (??2 = 34, df = 3, P < 0.005). Of 123 direct observations of bears approaching to pass beneath the structures, only 19.5% rerouted or avoided crossing under the structures. Bears' responses to the new structures were influenced by the behavior of visitors upon the structures. Potential management tools to minimize impacts of these structures on bears include enhanced public education regarding visitor conduct on the boardwalk, as well as visitor management and monitoring.

  20. afsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A3(2).

    PubMed

    Lee, Ping-Chin; Umeyama, Takashi; Horinouchi, Sueharu

    2002-03-01

    AfsR is a pleiotropic, global regulator that controls the production of actinorhodin, undecylprodigiosin and calcium-dependent antibiotic in Streptomyces coelicolor A3(2). AfsR, with 993 amino acids, is phosphorylated on serine and threonine residues by a protein serine/threonine kinase AfsK and contains an OmpR-like DNA-binding fold at its N-terminal portion and A- and B-type nucleotide-binding motifs in the middle of the protein. The DNA-binding domain, in-dependently of the nucleotide-binding domain, contributed the binding of AfsR to the upstream region of afsS that locates immediately 3' to afsR and encodes a 63-amino-acid protein. No transcription of afsS in the DeltaafsR background and restoration of afsS transcription by afsR on a plasmid in the same genetic background indicated that afsR served as a transcriptional activator for afsS. Interestingly, the AfsR binding site overlapped the promoter of afsS, as determined by DNase I protection assay and high-resolution S1 nuclease mapping. The nucleotide-binding domain contributed distinct ATPase and GTPase activity. The phosphorylation of AfsR by AfsK greatly enhanced the DNA-binding activity and modulated the ATPase activity. The DNA-binding ability of AfsR was independent of the ATPase activity. However, the ATPase activity was essential for transcriptional activation of afsS, probably because the energy available from ATP hydrolysis is required for the isomerization of the closed complex between AfsR and RNA polymerase to a transcriptionally competent open complex. Thus, AfsR turns out to be a unique transcriptional factor, in that it is modular, in which DNA-binding and ATPase activities are physically separable, and the two functions are modulated by phosphorylation on serine and threonine residues.

  1. Health assessment for Welsh Road/Barkman Landfill, Honey Brook, Chester County, Pennsylvania, Region 3. CERCLIS No. PAD980829527. Preliminary report

    SciTech Connect

    Not Available

    1988-12-02

    The Welsh Road/Barkman Landfill site in Honey Brook, Pennsylvania was an unpermitted residential and commercial refuse disposal facility that operated from 1963 to sometime in the 1980s. After 1977, the landfill continued to operate in defiance of legal action to support a closure plan. Various investigations conducted in the 1980s revealed that industrial and hazardous waste had been accepted by the site. The environmental contamination on-site consists of copper, lead, 1,2-dichloropropane, toluene, chloroform and methylene chloride in drummed wastes; and mercury, toluene, dichlorofluoromethane, methylene chloride, trichlorofluoromethane, 5-methyl-2-hexanone, trichloroethylene, 1,2-dichloroethane, and 1,3,5-cycloheptatriene in groundwater. One time sampling indicated the presence of volatile compounds in air (hydrogen chloride and chloroform). The environmental contamination off-site consists of cadmium in sediment; and chloromethane, chloroform, xylenes, dichlorofluoromethane, 1,1-dichloroethane, tetrachloroethylene, p-cresol, toluene, methyl isobutyl ketone, di-n-butyl phthalate, lead, mercury, and zinc in residential well water. The site is considered to be of potential public health concern because of the risk to human health caused by the possibility of exposure to hazardous substances via contaminated groundwater, surface water, soil, sediment, and airborne gases, vapors, and particulate.

  2. An Empirical Test of Oklahoma's A-F School Grades

    ERIC Educational Resources Information Center

    Adams, Curt M.; Forsyth, Patrick B.; Ware, Jordan; Mwavita, Mwarumba; Barnes, Laura L.; Khojasteb, Jam

    2016-01-01

    Oklahoma is one of 16 states electing to use an A-F letter grade as an indicator of school quality. On the surface, letter grades are an attractive policy instrument for school improvement; they are seemingly clear, simple, and easy to interpret. Evidence, however, on the use of letter grades as an instrument to rank and improve schools is scant…

  3. Ornicorrugatin, a new siderophore from Pseudomonas fluorescens AF76.

    PubMed

    Matthijs, Sandra; Budzikiewicz, Herbert; Schäfer, Mathias; Wathelet, Bernard; Cornelis, Pierre

    2008-01-01

    From a pyoverdin-negative mutant of Pseudomonas fluorescens AF76 a new lipopeptidic siderophore (ornicorrugatin) could be isolated. It is structurally related to the siderophore of Pseudomonas corrugata differing in the replacement of one Dab unit by Orn. PMID:18386480

  4. Accuracy of Prediction Equations to Assess Percentage of Body Fat in Children and Adolescents with Down Syndrome Compared to Air Displacement Plethysmography

    ERIC Educational Resources Information Center

    Gonzalez-Aguero, A.; Vicente-Rodriguez, G.; Ara, I.; Moreno, L. A.; Casajus, J. A.

    2011-01-01

    To determine the accuracy of the published percentage body fat (%BF) prediction equations (Durnin et al., Johnston et al., Brook and Slaughter et al.) from skinfold thickness compared to air displacement plethysmography (ADP) in children and adolescents with Down syndrome (DS). Twenty-eight children and adolescents with DS (10-20 years old; 12…

  5. Seismic images of the Brooks Range fold and thrust belt, Arctic Alaska, from an integrated seismic reflection/refraction experiment

    USGS Publications Warehouse

    Levander, A.; Fuis, G.S.; Wissinger, E.S.; Lutter, W.J.; Oldow, J.S.; Moore, T.E.

    1994-01-01

    We describe results of an integrated seismic reflection/refraction experiment across the Brooks Range and flanking geologic provinces in Arctic Alaska. The seismic acquisition was unusual in that reflection and refraction data were collected simultaneously with a 700 channel seismograph system deployed numerous times along a 315 km profile. Shot records show continuous Moho reflections from 0-180 km offset, as well as numerous upper- and mid-crustal wide-angle events. Single and low-fold near-vertical incidence common midpoint (CMP) reflection images show complex upper- and middle-crustal structure across the range from the unmetamorphosed Endicott Mountains allochthon (EMA) in the north, to the metamorphic belts in the south. Lower-crustal and Moho reflections are visible across the entire reflection profile. Travel-time inversion of PmP arrivals shows that the Moho, at 33 km depth beneath the North Slope foothills, deepens abruptly beneath the EMA to a maximum of 46 km, and then shallows southward to 35 km at the southern edge of the range. Two zones of upper- and middle-crustal reflections underlie the northern Brooks Range above ~ 12-15 km depth. The upper zone, interpreted as the base of the EMA, lies at a maximum depth of 6 km and extends over 50 km from the range front to the north central Brooks Range where the base of the EMA outcrops above the metasedimentary rocks exposed in the Doonerak window. We interpret the base of the lower zone, at ~ 12 km depth, to be from carbonate rocks above the master detachment upon which the Brooks Range formed. The seismic data suggest that the master detachment is connected to the faults in the EMA by several ramps. In the highly metamorphosed terranes south of the Doonerak window, the CMP section shows numerous south-dipping events which we interpret as a crustal scale duplex involving the Doonerak window rocks. The basal detachment reflections can be traced approximately 100 km, and dip southward from about 10-12 km

  6. Extracting uranium from seawater: Promising AF series adsorbents

    SciTech Connect

    Das, Sadananda; Oyola, Y.; Mayes, Richard T.; Janke, Christopher James; Kuo, Li-Jung; Gill, Gary; Wood, Jordana; Dai, Sheng

    2015-11-02

    Here, a new family of high surface area polyethylene fiber adsorbents (AF series) was recently developed at the Oak Ridge National Laboratory (ORNL). The AF series of were synthesized by radiation-induced graft polymerization of acrylonitrile and itaconic acid (at different monomer/co-monomer mol ratios) onto high surface area polyethylene fibers. The degree of grafting (%DOG) of AF series adsorbents was found to be 154 354%. The grafted nitrile groups were converted to amidoxime groups by treating with hydroxylamine. The amidoximated adsorbents were then conditioned with 0.44M KOH at 80 C followed by screening at ORNL with simulated seawater spiked with 8 ppm uranium. Uranium adsorption capacity in simulated seawater screening ranged from 170-200 g-U/kg-ads irrespective of %DOG. A monomer/co-monomer mol ratio in the range of 7.57-10.14 seemed to be optimum for highest uranium loading capacity. Subsequently, the adsorbents were also tested with natural seawater at Pacific Northwest National Laboratory (PNNL) using flow-through exposure uptake experiments to determine uranium loading capacity with varying KOH conditioning time at 80 C. The highest adsorption capacity of AF1 measured after 56 days of marine testing was demonstrated as 3.9 g-U/kg-adsorbent and 3.2 g-U/kg-adsorbent for 1hr and 3hrs of KOH conditioning at 80 C, respectively. Based on capacity values of several AF1 samples, it was observed that changing KOH conditioning from 3hrs to 1hr at 80 C resulted in 22-27% increase in uranium loading capacity in seawater.

  7. Extracting uranium from seawater: Promising AF series adsorbents

    DOE PAGES

    Das, Sadananda; Oyola, Y.; Mayes, Richard T.; Janke, Christopher James; Kuo, Li-Jung; Gill, Gary; Wood, Jordana; Dai, Sheng

    2015-11-02

    Here, a new family of high surface area polyethylene fiber adsorbents (AF series) was recently developed at the Oak Ridge National Laboratory (ORNL). The AF series of were synthesized by radiation-induced graft polymerization of acrylonitrile and itaconic acid (at different monomer/co-monomer mol ratios) onto high surface area polyethylene fibers. The degree of grafting (%DOG) of AF series adsorbents was found to be 154 354%. The grafted nitrile groups were converted to amidoxime groups by treating with hydroxylamine. The amidoximated adsorbents were then conditioned with 0.44M KOH at 80 C followed by screening at ORNL with simulated seawater spiked with 8more » ppm uranium. Uranium adsorption capacity in simulated seawater screening ranged from 170-200 g-U/kg-ads irrespective of %DOG. A monomer/co-monomer mol ratio in the range of 7.57-10.14 seemed to be optimum for highest uranium loading capacity. Subsequently, the adsorbents were also tested with natural seawater at Pacific Northwest National Laboratory (PNNL) using flow-through exposure uptake experiments to determine uranium loading capacity with varying KOH conditioning time at 80 C. The highest adsorption capacity of AF1 measured after 56 days of marine testing was demonstrated as 3.9 g-U/kg-adsorbent and 3.2 g-U/kg-adsorbent for 1hr and 3hrs of KOH conditioning at 80 C, respectively. Based on capacity values of several AF1 samples, it was observed that changing KOH conditioning from 3hrs to 1hr at 80 C resulted in 22-27% increase in uranium loading capacity in seawater.« less

  8. The SRB recovery ship Liberty Star reenters the Hangar AF area at CCAS with a spent SRB used on STS-

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Seen carrying a spent solid rocket booster (SRB) from the STS-87 launch on Nov. 19 is the solid rocket booster recovery ship Liberty Star as it reenters the Hangar AF area at Cape Canaveral Air Station. Hangar AF is a building originally used for Project Mercury, the first U.S. manned space program. The SRBs are the largest solid propellant motors ever flown and the first designed for reuse. After a Shuttle is launched, the SRBs are jettisoned at two minutes, seven seconds into the flight. At six minutes and 44 seconds after liftoff, the spent SRBs, weighing about 165,000 lb., have slowed their descent speed to about 62 mph and splashdown takes place in a predetermined area. They are retrieved from the Atlantic Ocean by special recovery vessels and returned for refurbishment and eventual reuse on future Shuttle flights. Once at Hangar AF, the SRBs are unloaded onto a hoisting slip and mobile gantry cranes lift them onto tracked dollies where they are safed and undergo their first washing.

  9. A spent SRB used on STS-87 is lifted in a hoisting slip in Hangar AF at CCAS

    NASA Technical Reports Server (NTRS)

    1997-01-01

    A spent solid rocket booster (SRB) from the STS-87 launch on Nov. 19 is lifted in a hoisting slip in the Hangar AF area at Cape Canaveral Air Station. Hangar AF is a building originally used for Project Mercury, the first U.S. manned space program. The SRBs are the largest solid propellant motors ever flown and the first designed for reuse. After a Shuttle is launched, the SRBs are jettisoned at two minutes, seven seconds into the flight. At six minutes and 44 seconds after liftoff, the spent SRBs, weighing about 165,000 lb., have slowed their descent speed to about 62 mph and splashdown takes place in a predetermined area. They are retrieved from the Atlantic Ocean by special recovery vessels and returned for refurbishment and eventual reuse on future Shuttle flights. Once at Hangar AF, the SRBs are unloaded onto a hoisting slip and mobile gantry cranes lift them onto tracked dollies where they are safed and undergo their first washing.

  10. The effects of varied densities on the growth and emigration of adult cutthroat trout and brook trout in fenced stream enclosures

    USGS Publications Warehouse

    Buys, D.J.; Hilderbrand, R.H.; Kershner, J.L.

    2009-01-01

    We evaluated the effects of various density treatments on adult fish growth and emigration rates between Bonneville cutthroat trout Oncorhynchus clarki utah and brook trout Salvelinus fontinalis in stream enclosures in Beaver Creek, Idaho, We used 3 density treatments (low, ambient, and high fish densities) to evaluate density-related effects and to ensure a response. Intraspecific ambient-density tests using cutthroat trout only were also performed. Results indicated an absence of cage effects in the stream enclosures and no differences in fish growth between ambient-density stream-enclosure fish and free-range fish. Brook trout outgrew and moved less than cutthroat trout in the stream enclosures, especially as density increased, In all 3 density treatments, brook trout gained more weight than cutthroat trout, with brook trout gaining weight in each density treatment and cutthroat trout losing weight at the highest density. At high densities, cutthroat trout attempted to emigrate more frequently than brook trout in sympatry and allopatry. We observed a negative correlation between growth and emigration for interspecific cutthroat trout, indicating a possible competitive response due to the presence of brook trout. We observed similar responses for weight and emigration in trials of allopatric cutthroat trout, indicating strong intraspecific effects as density increased. While cutthroat trout showed a response to experimental manipulation with brook trout at different densities, there has been long-term coexistence between these species in Beaver Creek, This system presents a unique opportunity to study the mechanisms that lead cutthroat trout to coexist with rather than be replaced by nonnative brook trout.

  11. Urbanization and recharge in the vicinity of East Meadow Brook, Nassau County, New York, part 4. Water quality in the headwaters area, 1988-93. Water resources investigations

    SciTech Connect

    Brown, C.J.; Scorca, M.P.; Stockar, G.G.; Stumm, F.; Ku, H.F.H.

    1997-12-31

    This report (1) discusses the concentration of constituents in precipitation and stormwater in the headwaters area of East Meadow Brook, and (2) describes the extent, and depth to which ground water beneath the stream is affected by stormwater. It also relates the concentrations and loads of selected constituents, including sodium and chloride, to storm discharge and season. This is the final report from the four-part study that examined stormwater and ground water at East Meadow Brook during 1988-93.

  12. 40 CFR 180.1206 - Aspergillus flavus AF36; exemption from the requirement of a tolerance.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Aspergillus flavus AF36; exemption... FOOD Exemptions From Tolerances § 180.1206 Aspergillus flavus AF36; exemption from the requirement of a... pesticide Aspergillus flavus AF36 in or on cotton, gin byproducts; cotton, hulls; cotton, meal;...

  13. New U/Pb ages from granite and granite gneiss in the Ruby geanticline and southern Brooks Range, Alaska ( USA).

    USGS Publications Warehouse

    Patton, W.W.; Stern, T.W.; Arth, Joseph G.; Carlson, C.

    1987-01-01

    New U/Pb zircon ages from the Ray Mountains of central Alaska clarify the plutonic history of the Ruby geanticline and support earlier suggestions that the Ruby geanticline and S Brooks Range were once parts of the same tectonostratigraphic terrane. U/Pb zircon ages of 109 to 112 Ma from the Ray Mountains pluton confirm previously reported mid-Cretaceous K/Ar ages and rule out the possibility that the earliest intrusive phase of the pluton is older than mid-Cretaceous K/Ar ages and rule out the possibility that the earliest intrusive phase of the pluton is older than mid- Cretaceous. New U/Pb zircon ages from 4 granite gneiss samples in the Ray Mountains indicate a Devonian protolith age of 390+ or -12 Ma and suggest that the Ruby geanticline, like the S Brooks Range, underwent a major plutonic event in mid-Paleozoic time.-Authors

  14. Growth, age at metamorphosis, and sex ratio of northern brook lamprey in a tributary of southern Lake Superior

    USGS Publications Warehouse

    Purvis, Harold A.

    1970-01-01

    Growth was studied of five year classes of the northern brook lamprey, Ichthyomyzon fossor, collected from the Sturgeon River during intervals between treatment of the stream with a lampricide. Growth varied considerably among year classes. Larvae of the 1963 year class were slightly longer at age II and 30% longer at age III than the III-group larvae of the 1960 year class. About 6% of 558 III-group lampreys of the 1963 year class had metamorphosed by 17 August 1966. Although the sex ratio of larvae was about 1:1, 97% of the metamorphosed lampreys were males. The distribution of pigmentation on the caudal fin and upper lip in ammocoetes less than 40 mm long permitted accurate and rapid separation of northern brook lampreys from the sea lamprey, Petromyzon marinus.

  15. Annual layers in river-bed sediment of a stagnant river-mouth area of the Kitagawa Brook, Central Japan

    NASA Astrophysics Data System (ADS)

    Kurashige, Y.; Nakano, T.; Kasubuchi, E.; Maruo, M.; Domitsu, H.

    2015-03-01

    The river mouth of Kitagawa Brook is normally stagnant because it is easily closed by sand and gravel transported by littoral currents of Biwa Lake, Japan. A new urban area exists in the basin and sewerage works were constructed in the early 1990s, so contaminated water with a bad odour had flowed into the brook before the sewerage works. To reduce the smell, the river mouth was excavated to narrow the channel in the early 1980s. Thus, river-bed sediment after this excavation only occurs at the river mouth. From the upper 24 cm of a sediment core, we found 19 strata of leaves which were supplied from deciduous trees in autumn. We also found several gravel layers which were supplied from the lake during severe storms. The combination of veins and gravel layers were reconstructed for about 20 years of sediment records with an error of two to three years.

  16. Survey of brook trout (Salvelinus fontinalis) population in the Upper Little Tennessee River watershed, Macon and Swain Counties, North Carolina

    SciTech Connect

    Not Available

    1993-08-01

    During the months May--November 1992, as part of the Western North Carolina Alliance upper Little Tennessee River watershed survey, streams in the North Carolina portion (Macon and Swain Counties) of the watershed were surveyed for the presence of brook trout (Salvelinus fontinalis). The purposes of this survey were threefold: (1) To use this sensitive, pollution-intolerant species as an indicator organism for high quality waters. (2) To assist the North Carolina Wildlife Resources Commission, the US Forest Service, and private landowners in managing for and protecting this popular game fish. (3) To locate possible stocks of pure ``southern Appalachian strain`` brook trout. Research is currently underway at the University of Tennessee and Auburn University to determine whether there is in fact a distinct southem subspecies or race of S. fontinalis. This author is one of those who is inclined to believe there is.

  17. The mitogenomes of the pouched lamprey (Geotria australis) and least brook lamprey (Lampetra aepyptera) with phylogenetic considerations.

    PubMed

    Ren, Jianfeng; Pu, Jiafei; Buchinger, Tyler; Zhu, Xinyun; Baker, Cindy; Li, Weiming

    2016-09-01

    We report the mitogenomes of the pouched lamprey (Geotria australis) and least brook lamprey (Lampetra aepyptera) in the families Geotriidae and Petromyzontidae, respectively. Both of the mitogenomes contain the 37 typical vertebrate genes. Their gene order and contents are identical to those of previously described lamprey mitogenomes. The mitogenome of G. australis (17 080 bp) is the largest among the 10 reported lamprey mitogenomes, owed to two long noncoding regions. The mitogenome of L. aepyptera is 77 bp longer (16 236 bp) than that of the congeneric European river lamprey L. fluviatilis, a size difference mostly due to different copy numbers of tandem repeats in the noncoding regions. The phylogenetic analysis supports that the pouched lamprey (Geotriidae) diverged earlier from the common ancestor of lampreys than the Petromyzonids, and the placement of the least brook lamprey in the genus Lampetra.

  18. Foraminiferal zonation and carbonate facies of Carboniferous (Mississippian and Pennsylvanian) Lisburne group, central and eastern Brooks range, Arctic Alaska

    USGS Publications Warehouse

    Armstrong, Augustus K.; Mamet, Bernard L.; Dutro, J. Thomas

    1970-01-01

    The Lisburne Group carbonate rocks of the central and eastern Brooks Range contain foraminiferal assemblages assigned to zones of late Tournaisian (Osage) to early Moscovian (Atoka) age. Representatives of both Eurasiatic and American cratonic microfaunas permit correlation with the original Carboniferous type sections in western Europe as well as with the standard Mississippian and Pennsylvanian sequences in the Mid-Continent region of North America. Correlation anomalies in the lower part of the sequence are discussed.

  19. Spatial heterogeneity of mobilization processes and input pathways of herbicides into a brook in a small agricultural catchment

    NASA Astrophysics Data System (ADS)

    Doppler, Tobias; Lück, Alfred; Popow, Gabriel; Strahm, Ivo; Winiger, Luca; Gaj, Marcel; Singer, Heinz; Stamm, Christian

    2010-05-01

    Soil applied herbicides can be transported from their point of application (agricultural field) to surface waters during rain events. There they can have harmful effects on aquatic species. Since the spatial distribution of mobilization and transport processes is very heterogeneous, the contributions of different fields to the total load in a surface water body may differ considerably. The localization of especially critical areas (contributing areas) can help to efficiently minimize herbicide inputs to surface waters. An agricultural field becomes a contributing area when three conditions are met: 1) herbicides are applied, 2) herbicides are mobilized on the field and 3) the mobilized herbicides are transported rapidly to the surface water. In spring 2009, a controlled herbicide application was performed on corn fields in a small (ca 1 km2) catchment with intensive crop production in the Swiss plateau. Subsequently water samples were taken at different locations in the catchment with a high temporal resolution during rain events. We observed both saturation excess and hortonian overland flow during the field campaign. Both can be important mobilization processes depending on the intensity and quantity of the rain. This can lead to different contributing areas during different types of rain events. We will show data on the spatial distribution of herbicide loads during different types of rain events. Also the connectivity of the fields with the brook is spatially heterogeneous. Most of the fields are disconnected from the brook by internal sinks in the catchment, which prevents surface runoff from entering the brook directly. Surface runoff from these disconnected areas can only enter the brook rapidly via macropore-flow into tile drains beneath the internal sinks or via direct shortcuts to the drainage system (maintenance manholes, farmyard or road drains). We will show spatially distributed data on herbicide concentration in purely subsurface systems which shows

  20. Crustal implications of bedrock geology along the Trans-Alaska Crustal Transect (TACT) in the Brooks Range, northern Alaska

    USGS Publications Warehouse

    Moore, T.E.; Wallace, W.K.; Mull, C.G.; Adams, K.E.; Plafker, G.; Nokleberg, W.J.

    1997-01-01

    Geologic mapping of the Trans-Alaska Crustal Transect (TACT) project along the Dalton Highway in northern Alaska indicates that the Endicott Mountains allochthon and the Hammond terrane compose a combined allochthon that was thrust northward at least 90 km in the Early Cretaceous. The basal thrust of the combined allochthon climbs up section in the hanging wall from a ductile shear zone, in the south through lower Paleozoic rocks of the Hammond terrane and into Upper Devonian rocks of the Endicott Mountains allochthon at the Mount Doonerak antiform, culminating in Early Cretaceous shale in the northern foothills of the Brooks Range. Footwall rocks north of the Mount Doonerak antiform are everywhere parautochthonous Permian and Triassic shale of the North Slope terrane rather than Jurassic and Lower Cretaceous strata of the Colville Basin as shown in most other tectonic models of the central Brooks Range. Stratigraphic and structural relations suggest that this thrust was the basal detachment for Early Cretaceous deformation. Younger structures, such as the Tertiary Mount Doonerak antiform, deform the Early Cretaceous structures and are cored by thrusts that root at a depth of about 10 to 30 km along a deeper detachment than the Early Cretaceous detachment. The Brooks Range, therefore, exposes (1) an Early Cretaceous thin-skinned deformational belt developed during arc-continent collision and (2) a mainly Tertiary thick-skinned orogen that is probably the northward continuation of the Rocky Mountains erogenic belt. A down-to-the-south zone of both ductile and brittle normal faulting along the southern margin of the Brooks Range probably formed in the mid-Cretaceous by extensional exhumation of the Early Cretaceous contractional deformation. copyright. Published in 1997 by the American Geophysical Union.

  1. Isolation and characterization of eight microsatellite loci in the brook lamprey Lampetra planeri (Petromyzontiformes) using 454 sequence data.

    PubMed

    Schedina, I M; Pfautsch, S; Hartmann, S; Dolgener, N; Polgar, A; Bianco, P G; Tiedemann, R; Ketmaier, V

    2014-09-01

    Eight polymorphic microsatellite loci were developed for the brook lamprey Lampetra planeri through 454 sequencing and their usefulness was tested in 45 individuals of both L. planeri and the river lamprey Lampetra fluviatilis. The number of alleles per loci ranged between two and five; the Italian and Irish populations had a mean expected heterozygosity of 0·388 and 0·424 and a mean observed heterozygosity of 0·418 and 0·411, respectively.

  2. Embossed Teflon AF Laminate Membrane Microfluidic Diaphragm Valves

    NASA Technical Reports Server (NTRS)

    Willis, Peter; Hunt, Brian; White,Victor; Grunthaner, Frank

    2008-01-01

    A microfluidic system has been designed to survive spaceflight and to function autonomously on the Martian surface. It manipulates microscopic quantities of liquid water and performs chemical analyses on these samples to assay for the presence of molecules associated with past or present living processes. This technology lies at the core of the Urey Instrument, which is scheduled for inclusion on the Pasteur Payload of the ESA ExoMars rover mission in 2013. Fabrication processes have been developed to make the microfabricated Teflon-AF microfluidic diaphragm pumps capable of surviving extreme temperature excursions before and after exposure to liquid water. Two glass wafers are etched with features and a continuous Teflon membrane is sandwiched between them (see figure). Single valves are constructed using this geometry. The microfabricated devices are then post processed by heating the assembled device while applying pneumatic pressure to force the Teflon diaphragm against the valve seat while it is softened. After cooling the device, the embossed membrane retains this new shape. This solves previous problems with bubble introduction into the fluid flow where deformations of the membrane at the valve seat occurred during device bonding at elevated temperatures (100-150 C). The use of laminated membranes containing commercial Teflon AF 2400 sheet sandwiched between spun Teflon AF 1600 layers performed best, and were less gas permeable than Teflon AF 1600 membranes on their own. Spinning Teflon AF 1600 solution (6 percent in FLOURINERT(Registered TradeMark) FC40 solvent, 3M Company) at 500 rpm for 1.5 seconds, followed by 1,000 rpm for 3 seconds onto Borofloat glass wafers, results in a 10-micron-thick film of extremely smooth Teflon AF. This spinning process is repeated several times on flat, blank, glass wafers in order to gradually build a thick, smooth membrane. After running this process at least five times, the wafer and Teflon coating are heated under vacuum

  3. Toxicity of 2,3,7,8-tetrachlorodibenzo-p-dioxin to brook trout (salvelinus fontinalis) during early development

    SciTech Connect

    Walker, M.K.; Peterson, R.E. )

    1994-05-01

    The sensitivity of early life stages of brook trout (Salvelinus fontinalis) to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) toxicity was investigated. Newly fertilized eggs were exposed for 48 h to water containing either acetone or a range of concentrations of [[sup 3]H]TCDD dissolved in acetone. Eggs were then transferred to TCDD-free water and observed through development. TCDD concentrations of 101 to 470 pg/g in the eggs caused dose-related increases in sac-fry mortality associated with yolk-sac edema, hemorrhages, and arrested development. These signs of TCDD-induced toxicity resemble blue-sac disease. The NOELs and LOELs for sac-fry mortality were 135 and 185 pg TCDD/g egg, respectively, whereas the LD50 and LD100 were 200 and 324 pg/g egg, respectively. The time course and signs of TCDD toxicity to brook trout during early development are essentially identical to those observed in both rainbow trout and lake trout following TCDD exposure of their eggs via water or injection, and in lake trout exposed to maternally derived TCDD. Brook trout sac fry are intermediate in sensitivity to TCDD-induced lethality compared to lake trout and rainbow trout.

  4. Effect of stream acidification and inorganic aluminum on mortality of brook trout (Salvelinus fontinalis) in the Catskill Mountains, New York

    USGS Publications Warehouse

    Baldigo, Barry P.; Murdoch, Peter S.

    1997-01-01

    Juvenile brook trout (Salvelinus fontinalis) were exposed in cages to fluctuating chemical conditions in four Catskill Mountain streams during the spring and fall of 1989 and the spring of 1990. Specific chemical constituents and characteristics of acidic episodes that correlated with increased fish mortality were identified. Mortality increased during acidic episodes in one poorly buffered stream when inorganic monomeric aluminum (Al(im)) concentrations increased; mortality was low in three other streams during acidic episodes of shorter duration and smaller magnitude than measured in the poorly buffered stream. Variation in mortality was attributed primarily to differences in concentrations of both Al(im) and dissolved organic carbon. Linear and logistic regression analyses indicate that either mean or median Al(im) concentrations could account for 73-99% of the variability in mortality. Regression analyses suggest that mortality was highly related (in order of importance) to Al(im), pH, dissolved organic carbon, calcium, and chloride concentration. Brook trout mortality was also highly related to durations of exposure above 0.225 and 0.250 mg/L Al(im) during test periods. Characteristics of acidic-Al(im) episodes that are critical to mortality of caged brook trout appear to be (i) Al(im) concentrations of at least 0.225 ?? 0.025 mg/L and (ii) exposure to these toxic Al(im) concentrations for at least 2 days.

  5. Appraisal of the water resources of the Big Sioux aquifer, Brookings, Deuel, and Hamlin Counties, South Dakota

    USGS Publications Warehouse

    Koch, Neil C.

    1980-01-01

    A finite-difference method digital model was used to simulate steady-state conditions of the Big Sioux aquifer in Brookings, Deuel, and Hamlin Counties, S. Dak. Average annual water levels in the Big Sioux aquifer and average base flow discharge 58 cubic feet per second on the Big Sioux River near Brookings were based on the period 1970 through 1976. The computer model was used to model transient conditions by simulating monthly periods from April through August 1976. Evapotranspiration and pumpage changes were made for each month. A computer simulation was made without irrigation pumpage which resulted in an increase in the base flow from 0.66 to 9 cubic feet per second for August 1976 in the Big Sioux River near Brookings. Two transient simulations , one with the drought conditions of 1976 and one using all the pumpage allowed by irrigation permits approved by the State as of February 1979 showed, as a result of pumpage, that there was a decrease in evapotranspiration and a decrease in discharge to streams which amounts to 26 and 31% of the total groundwater pumped. Groundwater and surface water in the study area are primarily calcium bicarbonate types and are chemically suitable for irrigation with respect to sodium hazard. Sepcific conductance of groundwater ranged from 407 to 1,790 micromhos per centimeter at 25 Celsius. (USGS)

  6. Ice processes affect habitat use and movements of adult cutthroat trout and brook trout in a Wyoming foothills stream

    USGS Publications Warehouse

    Lindstrom, J.W.; Hubert, W.A.

    2004-01-01

    Habitat use and movements of 25 adult cutthroat trout Oncorhynchus clarkii and 25 adult brook trout Salvelinus fontinalis from fall through winter 2002-2003 were assessed by means of radiotelemetry in a 7-km reach of a Rocky Mountains foothills stream. Temporal dynamics of winter habitat conditions were evaluated by regularly measuring the features of 30 pools and 5 beaver Castor canadensis ponds in the study reach. Groundwater inputs at three locations raised mean daily water temperatures in the stream channel during winter to 0.2-0.6??C and kept at least 250 m of the downstream channel free of ice, but the lack of surface ice further downstream led to the occurrence of frazil ice and anchor ice in pools and unstable habitat conditions for trout. Pools in segments that were not affected by groundwater inputs and beaver ponds tended to be stable and snow accumulated on the surface ice. Pools throughout the study reach tended to become more stable as snow accumulated. Both cutthroat trout and brook trout selected beaver ponds as winter progressed but tended to use lateral scour pools in proportion to their availability. Tagged fish not in beaver ponds selected lateral scour pools that were deeper than average and stable during winter. Movement frequencies by tagged fish decreased from fall through winter, but some individuals of both species moved during winter. Ice processes affected both the habitat use and movement patterns of cutthroat trout and brook trout in this foothills stream.

  7. Streambed-material characteristics and surface-water quality, Green Pond Brook and tributaries, Picatinny Arsenal, New Jersey, 1983-90

    USGS Publications Warehouse

    Storck, D.A.; Lacombe, Pierre

    1996-01-01

    This report presents the results of a study designed to determine whether Green Pond Brook and its tributaries contain contaminated streambed sediments and to characterize the quaity of water in the brook. Results of previous investigations at Picatinny Arsenal, Morris County, New Jersey, indicate that significant contamination of ground water, surface water, and soil is present at the arsenal. Forty-five streambed-material samples were collected for analysis to determine whether contaminants have migrated to the brook from the surrounding area. Samples were analyzed for trace elements, base/neutral- and acid-etractable compounds, insecticides, and other constituents. Results of an electromagnetic-conductivity and natural-gamma-ray survey were used to describe the distribution of particle sizes in streambed and substreambed sediments. Historical results of analyses of streambed-material and surface-water samples also are presented. Samples of streambed material from three areas in Green Pond Brook and its tributaries contained organic and (or) inorganic constituents in concentrations greater than those typically found at the arsenal. These areas are Green Pond Brook, from the area near the outflow of Picatinny Lake downstream to Farley Avenue; Bear Swamp Brook, from the area near building 241 downstream to the confluence with Green Pond Brook; and Green Pond Brook, from the open burning area downstream to the dam near building 1178. Contaminants identified include trace elements, polynuclear aromatic hydrocarbons, polychlorinated biphenyls, and organochlorine insecticides. Surface water in Green Pond Brook contained several volatile organic compounds, including trichloroethylene, tetrachloroethylene, and 1,2-dichloroethylene, at maximum concen- trations of 3.8, 4.6, and 11 micrograms per liter, respectively. Volatilization is expected to remove volatile organic compounds in the steep, fast- flowing reaches of the brook. No organic or inorganic constituents were

  8. NASA Plum Brook's B-2 test facility-Thermal vacuum and propellant test facility

    NASA Astrophysics Data System (ADS)

    Kudlac, Maureen; Weaver, Harold; Cmar, Mark

    2012-06-01

    The National Aeronautics and Space Administration (NASA) Glenn Research Center (GRC) Plum Brook Station (PBS) Spacecraft Propulsion Research Facility, commonly referred to as B-2, is NASA's third largest thermal vacuum facility. It is the largest designed to store and transfer large quantities of liquid hydrogen and liquid oxygen, and is perfectly suited to support developmental testing of upper stage chemical propulsion systems as well as fully integrated stages. The facility is also capable of providing thermal-vacuum simulation services to support testing of large lightweight structures, Cryogenic Fluid Management (CFM) systems, electric propulsion test programs, and other In-Space propulsion programs. A recently completed integrated system test demonstrated the refurbished thermal vacuum capabilities of the facility. The test used the modernized data acquisition and control system to monitor the facility. The heat sink provided a uniform temperature environment of approximately 77K. The modernized infrared lamp array produced a nominal heat flux of 1.4 kW/m2. With the lamp array and heat sink operating simultaneously, the thermal systems produced a heat flux pattern simulating radiation to space on one surface and solar exposure on the other surface.

  9. Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations

    PubMed Central

    Roux, Camille; Neuenschwander, Samuel; Goudet, Jérôme; Launey, Sophie; Evanno, Guillaume

    2016-01-01

    Inferring the history of isolation and gene flow during species divergence is a central question in evolutionary biology. The European river lamprey (Lampetra fluviatilis) and brook lamprey (L. planeri) show a low reproductive isolation but have highly distinct life histories, the former being parasitic-anadromous and the latter non-parasitic and freshwater resident. Here we used microsatellite data from six replicated population pairs to reconstruct their history of divergence using an approximate Bayesian computation framework combined with a random forest model. In most population pairs, scenarios of divergence with recent isolation were outcompeted by scenarios proposing ongoing gene flow, namely the Secondary Contact (SC) and Isolation with Migration (IM) models. The estimation of demographic parameters under the SC model indicated a time of secondary contact close to the time of speciation, explaining why SC and IM models could not be discriminated. In case of an ancient secondary contact, the historical signal of divergence is lost and neutral markers converge to the same equilibrium as under the less parameterized model allowing ongoing gene flow. Our results imply that models of secondary contacts should be systematically compared to models of divergence with gene flow; given the difficulty to discriminate among these models, we suggest that genome-wide data are needed to adequately reconstruct divergence history. PMID:27077007

  10. Atmospheric dry deposition on pines in the Eastern Brook Lake Watershed, Sierra Nevada, California

    NASA Astrophysics Data System (ADS)

    Bytnerowicz, Andrzej; Dawson, P. J.; Morrison, C. L.; Poe, M. P.

    Atmospheric dry deposition to branches of Pinus contorta and P. albicaulis was measured during summer 1987 in a sub-alpine zone at Eastern Brook Lake Watershed (EBLW), eastern Sierra Nevada, California. Results are presented as deposition fluxes of NO 3-, SO 42-, PO 43-, Cl -, F -, NH 4+, Ca 2+, Mg 2+, Na +, K +, Zn 2+, Fe 3+, Mn 2+, Pb 2+ and H +, and compared with other locations in California and elsewhere. Deposition fluxes of anions and cations to the pine branches were low, several times lower than the values determined near the Emerald Lake Watershed (ELW), another sub-alpine location in the western Sierra Nevada. The sums of deposition fluxes of the measured cations and anions to pine surfaces were similar, in contrast to the ELW location where the sums of cation fluxes were much higher than the sums of anion fluxes. A strong positive correlation between depositions of NO 3- and NH 4+, as well as SO 42- and Ca 2+, suggested that large portions of these ions might have originated from particulate NH 4NO 3 and CaSO 4 deposited on pine surfaces. An estimated total N dry deposition (surface deposition of NO 3- and NH 4+ and internal uptake of NO 2 and HNO 3) to the forested area of the EBLW was 29.54 eq ha -1 yr - (about 414 g H ha -1 yr -1).

  11. Pipeline corridors through wetlands -- Impacts on plant communities: Norris Brook Crossing Peabody, Massachusetts

    SciTech Connect

    Shem, L.M.; Van Dyke, G.D.; Zimmerman, R.E.

    1994-12-01

    The goal of the Gas Research Institute Wetland Corridors Program is to document impacts of existing pipelines on the wetlands they traverse. To accomplish this goal, 12 existing wetland crossings were surveyed. These sites varied in elapsed time since pipeline construction, wetland type, pipeline installation techniques, and right-of-way (ROW) management practices. This report presents the results of a survey conducted August 17--19, 1992, at the Norris Brook crossing in the town of Peabody, Essex County, Massachusetts. The pipeline at this site was installed during September and October 1990. A backhoe was used to install the pipeline. The pipe was assembled on the adjacent upland and slid into the trench, after which the backhoe was used again to fill the trench and cover the pipeline. Within two years after pipeline construction, a dense vegetative community, composed predominantly of native perennial species, had become established on the ROW. Compared with adjacent natural areas undisturbed by pipeline installation, there was an increase in purple loosestrife and cattail within the ROW, while large woody species were excluded from the ROW. As a result of the ROW`s presence, habitat diversity, edge-type habitat, and species diversity increased within the site. Crooked-stem aster, Aster prenanthoides (a species on the Massasschusetts list of plants of special concern), occurred in low numbers in the adjacent natural areas and had reinvaded the ROW in low numbers.

  12. Comparing decadal responses of whole-watershed manipulations at the Bear Brook and Fernow experiments.

    PubMed

    Fernandez, Ivan J; Adams, Mary Beth; SanClements, Michael D; Norton, Stephen A

    2010-12-01

    The Bear Brook Watershed in Maine (BBWM), USA, and the Fernow Experimental Forest in West Virginia, USA, represent unique, long-term, paired, whole watershed, experimental manipulations focusing on the effects of nitrogen (N) and sulfur (S) deposition on temperate forests. Both watersheds began whole-ecosystem additions of N and S as (NH(4))(2)SO(4) in the fall of 1989, and both are entering their third decade of chronic enrichment of the treated watersheds, while the reference watersheds offer unique opportunities to evaluate forest watershed responses to recovery. Differences between BBWM and Fernow in the history of atmospheric deposition, soil properties, and forest composition all contribute to different response trajectories in stream chemical exports over time. The four watersheds represent a spectrum of N enrichment and retention, ranging from ≈98% N retention in the reference watershed in Maine, to ≈20% N retention in the treated watershed in West Virginia. Despite these differences, there is evidence that mechanisms of response in base cation leaching and other processes are similar among all four watersheds. In both cases, the history to date of two decades of research and monitoring has provided new insights into ecosystem response not evident in more traditional short-term research.

  13. Soil chemical and physical properties at the Bear Brook Watershed in Maine, USA.

    PubMed

    SanClements, Michael D; Fernandez, Ivan J; Norton, Stephen A

    2010-12-01

    Acidic deposition leads to the acidification of waters and accelerated leaching and depletion of soil base cations. The Bear Brook Watershed in Maine has used whole-watershed chemical manipulations to study the effects of elevated N and S on forest ecosystem function on a decadal time scale. The objectives of this study were to define the chemical and physical characteristics of soils in both the reference and treated watersheds after 17 years of treatment and assess evidence of change in soil chemistry by comparing soil studies in 1998 and 2006. Results from 1998 confirmed depletion of soil base cation pools and decreased pH due to elevated N and S within the treated watershed. However, between 1998 and 2006, during a period of declining SO4(2-) deposition and continued whole-watershed experimental acidification on the treated watershed, there was little evidence of continued soil exchangeable base cation concentration depletion or recovery. The addition of a pulse of litterfall and accelerating mineralization from a severe ice storm in 1998 may have had significant effects on forest floor nutrient pools and cycling between 1998 and 2006. Our findings suggest that mineralization of additional litter inputs from the ice storm may have obscured temporal trends in soil chemistry. The physical data presented also demonstrate the importance of coarse fragments in the architecture of these soils. This study underscores the importance of long-term, quantitative soil monitoring in determining the trajectories of change in forest soils and ecosystem processes over time.

  14. NASA Plum Brook's B-2 Test Facility: Thermal Vacuum and Propellant Test Facility

    NASA Technical Reports Server (NTRS)

    Kudlac, Maureen T.; Weaver, Harold F.; Cmar, Mark D.

    2012-01-01

    The National Aeronautics and Space Administration (NASA) Glenn Research Center (GRC) Plum Brook Station (PBS) Spacecraft Propulsion Research Facility, commonly referred to as B-2, is NASA's third largest thermal vacuum facility. It is the largest designed to store and transfer large quantities of liquid hydrogen and liquid oxygen, and is perfectly suited to support developmental testing of upper stage chemical propulsion systems as well as fully integrated stages. The facility is also capable of providing thermal-vacuum simulation services to support testing of large lightweight structures, Cryogenic Fluid Management (CFM) systems, electric propulsion test programs, and other In-Space propulsion programs. A recently completed integrated system test demonstrated the refurbished thermal vacuum capabilities of the facility. The test used the modernized data acquisition and control system to monitor the facility. The heat sink provided a uniform temperature environment of approximately 77 K. The modernized infrared lamp array produced a nominal heat flux of 1.4 kW/sq m. With the lamp array and heat sink operating simultaneously, the thermal systems produced a heat flux pattern simulating radiation to space on one surface and solar exposure on the other surface.

  15. Insights from transformations under way at four Brookings-Dartmouth accountable care organization pilot sites.

    PubMed

    Larson, Bridget K; Van Citters, Aricca D; Kreindler, Sara A; Carluzzo, Kathleen L; Gbemudu, Josette N; Wu, Frances M; Nelson, Eugene C; Shortell, Stephen M; Fisher, Elliott S

    2012-11-01

    This cross-site comparison of the early experience of four provider organizations participating in the Brookings-Dartmouth Accountable Care Organization Collaborative identifies factors that sites perceived as enablers of successful ACO formation and performance. The four pilots varied in size, with between 7,000 and 50,000 attributed patients and 90 to 2,700 participating physicians. The sites had varying degrees of experience with performance-based payments; however, all formed collaborative new relationships with payers and created shared savings agreements linked to performance on quality measures. Each organization devoted major efforts to physician engagement. Policy makers now need to consider how to support and provide incentives for the successful formation of multipayer ACOs, and how to align private-sector and CMS performance measures. Linking providers to learning networks where payers and providers can address common technical issues could help. These sites' transitions to the new payment model constitutes an ongoing journey that will require continual adaptation in the structure of contracts and organizational attributes. PMID:23129669

  16. Summer temperature metrics for predicting brook trout (Salvelinus fontinalis) distribution in streams

    USGS Publications Warehouse

    Parrish, Donna; Butryn, Ryan S.; Rizzo, Donna M.

    2012-01-01

    We developed a methodology to predict brook trout (Salvelinus fontinalis) distribution using summer temperature metrics as predictor variables. Our analysis used long-term fish and hourly water temperature data from the Dog River, Vermont (USA). Commonly used metrics (e.g., mean, maximum, maximum 7-day maximum) tend to smooth the data so information on temperature variation is lost. Therefore, we developed a new set of metrics (called event metrics) to capture temperature variation by describing the frequency, area, duration, and magnitude of events that exceeded a user-defined temperature threshold. We used 16, 18, 20, and 22°C. We built linear discriminant models and tested and compared the event metrics against the commonly used metrics. Correct classification of the observations was 66% with event metrics and 87% with commonly used metrics. However, combined event and commonly used metrics correctly classified 92%. Of the four individual temperature thresholds, it was difficult to assess which threshold had the “best” accuracy. The 16°C threshold had slightly fewer misclassifications; however, the 20°C threshold had the fewest extreme misclassifications. Our method leveraged the volumes of existing long-term data and provided a simple, systematic, and adaptable framework for monitoring changes in fish distribution, specifically in the case of irregular, extreme temperature events.

  17. The crustal section of the Siniktanneyak Mountain ophiolite, Brooks Range, Alaska

    SciTech Connect

    Bickerstaff, D.; Harris, R.A.; Miller, M.A. . Dept. of Geology and Geography)

    1993-04-01

    Fragments of the upper crustal section of the Brooks Range Ophiolite on the west flank of Siniktanneyak Mountain expose important contact relations and paleohorizontal indicators. The nearly complete crustal sequence faces northwest. Based on field observations, the crustal units encountered at Siniktanneyak Mountain from bottom to top are: (1) layered gabbro, (2) isotropic gabbro, (3) high level and late-stage intrusions of diorite and diabase, (4) rare sheeted dikes, (5) basalt, and (6) a bedded volcanic tuff. Potassium feldspar-bearing pegmatites are also found. Of particular interest is the orientation of the layered gabbro, sheeted dikes, and the bedded volcanic tuff. The steeply dipping gabbro layers strike N-S, the adjacent vertical sheeted dikes strike NE-SW. Bedded volcanic tuff and lavas are flat lying. Contacts within the upper crust units are often covered by talus. Contacts between various plutonic rocks are both sharp and gradational, suggesting syn- and post-cooling intrusions. Contacts between plutonic rock and higher volcanic rock appear to be fault contacts.

  18. Lateral continuity of the Blarney Creek Thrust, Doonerak Windown, Central Brooks Range, Alaska

    SciTech Connect

    Seidensticker, C.M.; Julian, F.E.; Phelps, J.C.; Oldow, J.S.; Avellemant, H.G.

    1985-04-01

    The contact between Carboniferous and lower Paleozoic rocks, exposed along the northern margin of the Doonerak window in the central Brooks Range, is a major thrust fault called the Blarney Creek thrust (BCT). The BCT has been traced over a distance of 25 km, from Falsoola Mountain to Wien Mountain. The tectonic nature of this contact is demonstrated by: (1) omission of stratigraphic units above and below the BCT; (2) large angular discordance in orientation of first-generation cleavage at the BCT; (3) numerous thrust imbricates developed in the upper-plate Carboniferous section that sole into the BCT; and (4) truncation of an upper-plate graben structure at the BCT. Lack of evidence for pre-Carboniferous deformation in the lower plate casts doubt on the interpretation of the contact as an angular unconformity. However, the localized presence below the BCT of Mississippian Kekiktuk Conglomerate and Kayak Shale, in apparent depositional contact with lower Paleozoic rocks, suggests that the BCT follows an originally disconformable contact between the Carboniferous and lower Paleozoic rocks. The juxtaposition of younger over older rocks at the BCT is explained by calling upon the BCT to act as the upper detachment surface of a duplex structure. Duplex development involves initial imbrication of the Carboniferous section using the BCT as a basal decollement, followed by formation of deeper thrusts in the lower Paleozoic section, which ramp up and merge into the BCT.

  19. Modeling a High Resolution Stream Chloride Time Series from the Biscuit Brook Catchment, Catskills, NY

    NASA Astrophysics Data System (ADS)

    Shaw, S. B.; Walter, M. T.; Harpold, A. A.

    2006-12-01

    Compelling work by Kirchner and colleagues (e.g., Kirchner et al., 2001, J. of Hydro., 254:81-100) suggests that lengthy, high resolution chloride time series can reveal the underlying travel time distribution of water in a catchment. However, few data sets of suitable length or sampling frequency have been available for assessment. Our analysis of a ten-year, weekly stream chloride time series data set for the steep, forested Biscuit Brook catchment in the Catskill Mountains of NY resulted in a 1/f spectral density plot. We used a lumped, two reservoir model with an upper reservoir representing quickflow and a lower reservoir representing base flow to reasonably replicate stream flow and stream chloride concentrations. A spectral analysis of the modeled daily chloride signal also resulted in a 1/f spectral density plot. This suggests that in some systems a 1/f signature can result from processes other than superposition of lateral chemical transport pathways, as has been previously hypothesized by other researchers. In this case, it appears that a long-term periodicity established by seasonal moisture deficits combines with shorter wavelength variations from rainfall inputs to create a 1/f spectral density for chloride concentration.

  20. Data Acquisition System Architecture and Capabilities At NASA GRC Plum Brook Station's Space Environment Test Facilities

    NASA Technical Reports Server (NTRS)

    Evans, Richard K.; Hill, Gerald M.

    2012-01-01

    Very large space environment test facilities present unique engineering challenges in the design of facility data systems. Data systems of this scale must be versatile enough to meet the wide range of data acquisition and measurement requirements from a diverse set of customers and test programs, but also must minimize design changes to maintain reliability and serviceability. This paper presents an overview of the common architecture and capabilities of the facility data acquisition systems available at two of the world?s largest space environment test facilities located at the NASA Glenn Research Center?s Plum Brook Station in Sandusky, Ohio; namely, the Space Propulsion Research Facility (commonly known as the B-2 facility) and the Space Power Facility (SPF). The common architecture of the data systems is presented along with details on system scalability and efficient measurement systems analysis and verification. The architecture highlights a modular design, which utilizes fully-remotely managed components, enabling the data systems to be highly configurable and support multiple test locations with a wide-range of measurement types and very large system channel counts.

  1. Predicting acidification recovery at the Hubbard Brook Experimental Forest, New Hampshire: evaluation of four models.

    PubMed

    Tominaga, Koji; Aherne, Julian; Watmough, Shaun A; Alveteg, Mattias; Cosby, Bernard J; Driscoll, Charles T; Posch, Maximilian; Pourmokhtarian, Afshin

    2010-12-01

    The performance and prediction uncertainty (owing to parameter and structural uncertainties) of four dynamic watershed acidification models (MAGIC, PnET-BGC, SAFE, and VSD) were assessed by systematically applying them to data from the Hubbard Brook Experimental Forest (HBEF), New Hampshire, where long-term records of precipitation and stream chemistry were available. In order to facilitate systematic evaluation, Monte Carlo simulation was used to randomly generate common model input data sets (n = 10,000) from parameter distributions; input data were subsequently translated among models to retain consistency. The model simulations were objectively calibrated against observed data (streamwater: 1963-2004, soil: 1983). The ensemble of calibrated models was used to assess future response of soil and stream chemistry to reduced sulfur deposition at the HBEF. Although both hindcast (1850-1962) and forecast (2005-2100) predictions were qualitatively similar across the four models, the temporal pattern of key indicators of acidification recovery (stream acid neutralizing capacity and soil base saturation) differed substantially. The range in predictions resulted from differences in model structure and their associated posterior parameter distributions. These differences can be accommodated by employing multiple models (ensemble analysis) but have implications for individual model applications.

  2. Hiding in Plain Sight: A Case for Cryptic Metapopulations in Brook Trout (Salvelinus fontinalis).

    PubMed

    Kazyak, David C; Hilderbrand, Robert H; King, Tim L; Keller, Stephen R; Chhatre, Vikram E

    2016-01-01

    A fundamental issue in the management and conservation of biodiversity is how to define a population. Spatially contiguous fish occupying a stream network have often been considered to represent a single, homogenous population. However, they may also represent multiple discrete populations, a single population with genetic isolation-by-distance, or a metapopulation. We used microsatellite DNA and a large-scale mark-recapture study to assess population structure in a spatially contiguous sample of Brook Trout (Salvelinus fontinalis), a species of conservation concern. We found evidence for limited genetic exchange across small spatial scales and in the absence of barriers to physical movement. Mark-recapture and stationary passive integrated transponder antenna records demonstrated that fish from two tributaries very seldom moved into the opposite tributary, but movements between the tributaries and mainstem were more common. Using Bayesian genetic clustering, we identified two genetic groups that exhibited significantly different growth rates over three years of study, yet survival rates were very similar. Our study highlights the importance of considering the possibility of multiple genetically distinct populations occurring within spatially contiguous habitats, and suggests the existence of a cryptic metapopulation: a spatially continuous distribution of organisms exhibiting metapopulation-like behaviors.

  3. The Cenozoic structural evolution of a fold-and-thrust belt, northeastern Brooks Range, Alaska

    SciTech Connect

    Hanks, C.L. )

    1993-03-01

    A Cenozoic fold-and-thrust belt in the eastern structural province of the northeastern Brooks Range exposes polydeformed low-grade metasedimentary and metavolcanic rocks of the pre-Mississippian basement and its sedimentary cover immediately adjacent to much younger foredeep deposits. Analysis of mesoscopic and map-scale structures in the range-front region suggests that at least one pre-Mississippian deformational event was recorded into the basement sequence by north-vergent fold-and-thrust structures and associated penetrative structures. Most of later Cenozoic shortening of the pre-Mississippian rocks was accommodated by thrust duplication, with little development of penetrative mesoscopic structures. Although separated from the underlying basement rocks by a major regional decollement horizon, Cenozoic deformation in the overlying Mississippian through Lower Cretaceous cover sequence also was primarily by thrust duplication. Although local and regional structural trends within the cover sequence suggest that Cenozoic deformation was north-northwest directed, east-west Cenozoic structural trends within the pre-Mississippian rocks may reflect an inherited pre-Mississippian structural grain and/or pre-Mississippian-age structures reactivated during Cenozoic deformation. A regional balanced cross section of the eastern structural province was constructed. 29 refs., 14 figs.

  4. Hiding in Plain Sight: A Case for Cryptic Metapopulations in Brook Trout (Salvelinus fontinalis)

    PubMed Central

    Kazyak, David C.; Hilderbrand, Robert H.; King, Tim L.; Keller, Stephen R.; Chhatre, Vikram E.

    2016-01-01

    A fundamental issue in the management and conservation of biodiversity is how to define a population. Spatially contiguous fish occupying a stream network have often been considered to represent a single, homogenous population. However, they may also represent multiple discrete populations, a single population with genetic isolation-by-distance, or a metapopulation. We used microsatellite DNA and a large-scale mark-recapture study to assess population structure in a spatially contiguous sample of Brook Trout (Salvelinus fontinalis), a species of conservation concern. We found evidence for limited genetic exchange across small spatial scales and in the absence of barriers to physical movement. Mark-recapture and stationary passive integrated transponder antenna records demonstrated that fish from two tributaries very seldom moved into the opposite tributary, but movements between the tributaries and mainstem were more common. Using Bayesian genetic clustering, we identified two genetic groups that exhibited significantly different growth rates over three years of study, yet survival rates were very similar. Our study highlights the importance of considering the possibility of multiple genetically distinct populations occurring within spatially contiguous habitats, and suggests the existence of a cryptic metapopulation: a spatially continuous distribution of organisms exhibiting metapopulation-like behaviors. PMID:26730588

  5. Are brook trout streams in western Virginia and Shenandoah National Park recovering from acidification?

    PubMed

    Webb, James R; Cosby, Bernard J; Deviney, Frank A; Galloway, James N; Maben, Suzanne W; Bulger, Arthur J

    2004-08-01

    Streamwater composition data obtained through periodic sampling of streams that support brook trout (Salvelinus fontinalis) in the mountains of western Virginia were examined for evidence of recovery from acidification during the 1988-2001 period. Measurements of sulfate deposition in precipitation indicate that sulfate deposition in the region declined approximately 40% between 1985 and 2000. While no significant regional trends in acid-base constituents were observed for the set (n = 65) of western Virginia study streams, significant regional trends were observed for a subset (n = 14) of streams in Shenandoah National Park (SNP). For the subset of SNP streams, the median increase in acid-neutralizing capacity (ANC) was 0.168 microequiv L(-1) year(-1) and the median decrease in sulfate concentration was -0.229 microequiv L(-1) year(-1). Although these trends are consistent with recovery from acidification, the degree of apparent recovery is small compared to estimates of historic acidification in SNP streams and much less than observed in other, more northern regions in the United States. Correlation between sulfate concentration trends and current sulfate concentrations in streamwater suggests that recovery from stream acidification in the western Virginia region is determined by sulfur retention processes in watershed soils. A transient increase in nitrate concentrations that occurred among some western Virginia streams following forest defoliation by the gypsy moth (Lymantria dispar) complicates interpretation of the observed patterns of change in acid-base status.

  6. Results of the independent radiological verification survey of the lower Sheffield Brook floodplain, Wayne, New Jersey

    SciTech Connect

    Yalcintas, M.G.; Carrier, R.F.

    1989-05-01

    Prior to 1971, the W.R. Grace Company processed and stored radioactive materials at Wayne, New Jersey, under license to the Atomic Energy Commission. Decontamination of structures and storage of waste materials on the property at the Wayne Interim Storage Site (WISS) took place in 1974. Surveys by the State of New Jersey Department of Environmental Protection and by Oak Ridge Associated Universities for the NRC in 1982 indicated that properties adjacent to the WISS contained surface contamination by radioactive residuals in amounts exceeding those acceptable under US Department of Energy (DOE) remedial action guidelines. At the request of DOE, remedial actions have been conducted by Bechtel National, Inc., to remove radioactive residuals from properties adjacent to the site. It is the policy of DOE to assign an independent verification contractor to ensure the effectiveness of remedial actions performed within the Formerly Utilized Sites Remedial Action Program. This report describes the methods and results of those studies that were conducted by the Measurement Applications and Development Group of the Oak Ridge National Laboratory for the lower Sheffield Brook floodplain west of the WISS. Based upon post-remedial action and verification survey data, it was concluded that residual soil concentrations and gamma levels following excavation and backfilling of the area are within the limits prescribed by DOE radiological guidelines. 12 refs., 6 figs., 8 tabs.

  7. Insights from transformations under way at four Brookings-Dartmouth accountable care organization pilot sites.

    PubMed

    Larson, Bridget K; Van Citters, Aricca D; Kreindler, Sara A; Carluzzo, Kathleen L; Gbemudu, Josette N; Wu, Frances M; Nelson, Eugene C; Shortell, Stephen M; Fisher, Elliott S

    2012-11-01

    This cross-site comparison of the early experience of four provider organizations participating in the Brookings-Dartmouth Accountable Care Organization Collaborative identifies factors that sites perceived as enablers of successful ACO formation and performance. The four pilots varied in size, with between 7,000 and 50,000 attributed patients and 90 to 2,700 participating physicians. The sites had varying degrees of experience with performance-based payments; however, all formed collaborative new relationships with payers and created shared savings agreements linked to performance on quality measures. Each organization devoted major efforts to physician engagement. Policy makers now need to consider how to support and provide incentives for the successful formation of multipayer ACOs, and how to align private-sector and CMS performance measures. Linking providers to learning networks where payers and providers can address common technical issues could help. These sites' transitions to the new payment model constitutes an ongoing journey that will require continual adaptation in the structure of contracts and organizational attributes.

  8. Hiding in Plain Sight: A Case for Cryptic Metapopulations in Brook Trout (Salvelinus fontinalis).

    PubMed

    Kazyak, David C; Hilderbrand, Robert H; King, Tim L; Keller, Stephen R; Chhatre, Vikram E

    2016-01-01

    A fundamental issue in the management and conservation of biodiversity is how to define a population. Spatially contiguous fish occupying a stream network have often been considered to represent a single, homogenous population. However, they may also represent multiple discrete populations, a single population with genetic isolation-by-distance, or a metapopulation. We used microsatellite DNA and a large-scale mark-recapture study to assess population structure in a spatially contiguous sample of Brook Trout (Salvelinus fontinalis), a species of conservation concern. We found evidence for limited genetic exchange across small spatial scales and in the absence of barriers to physical movement. Mark-recapture and stationary passive integrated transponder antenna records demonstrated that fish from two tributaries very seldom moved into the opposite tributary, but movements between the tributaries and mainstem were more common. Using Bayesian genetic clustering, we identified two genetic groups that exhibited significantly different growth rates over three years of study, yet survival rates were very similar. Our study highlights the importance of considering the possibility of multiple genetically distinct populations occurring within spatially contiguous habitats, and suggests the existence of a cryptic metapopulation: a spatially continuous distribution of organisms exhibiting metapopulation-like behaviors. PMID:26730588

  9. Data Acquisition System Architecture and Capabilities at NASA GRC Plum Brook Station's Space Environment Test Facilities

    NASA Technical Reports Server (NTRS)

    Evans, Richard K.; Hill, Gerald M.

    2014-01-01

    Very large space environment test facilities present unique engineering challenges in the design of facility data systems. Data systems of this scale must be versatile enough to meet the wide range of data acquisition and measurement requirements from a diverse set of customers and test programs, but also must minimize design changes to maintain reliability and serviceability. This paper presents an overview of the common architecture and capabilities of the facility data acquisition systems available at two of the world's largest space environment test facilities located at the NASA Glenn Research Center's Plum Brook Station in Sandusky, Ohio; namely, the Space Propulsion Research Facility (commonly known as the B-2 facility) and the Space Power Facility (SPF). The common architecture of the data systems is presented along with details on system scalability and efficient measurement systems analysis and verification. The architecture highlights a modular design, which utilizes fully-remotely managed components, enabling the data systems to be highly configurable and support multiple test locations with a wide-range of measurement types and very large system channel counts.

  10. Are brook trout streams in western Virginia and Shenandoah National Park recovering from acidification?

    PubMed

    Webb, James R; Cosby, Bernard J; Deviney, Frank A; Galloway, James N; Maben, Suzanne W; Bulger, Arthur J

    2004-08-01

    Streamwater composition data obtained through periodic sampling of streams that support brook trout (Salvelinus fontinalis) in the mountains of western Virginia were examined for evidence of recovery from acidification during the 1988-2001 period. Measurements of sulfate deposition in precipitation indicate that sulfate deposition in the region declined approximately 40% between 1985 and 2000. While no significant regional trends in acid-base constituents were observed for the set (n = 65) of western Virginia study streams, significant regional trends were observed for a subset (n = 14) of streams in Shenandoah National Park (SNP). For the subset of SNP streams, the median increase in acid-neutralizing capacity (ANC) was 0.168 microequiv L(-1) year(-1) and the median decrease in sulfate concentration was -0.229 microequiv L(-1) year(-1). Although these trends are consistent with recovery from acidification, the degree of apparent recovery is small compared to estimates of historic acidification in SNP streams and much less than observed in other, more northern regions in the United States. Correlation between sulfate concentration trends and current sulfate concentrations in streamwater suggests that recovery from stream acidification in the western Virginia region is determined by sulfur retention processes in watershed soils. A transient increase in nitrate concentrations that occurred among some western Virginia streams following forest defoliation by the gypsy moth (Lymantria dispar) complicates interpretation of the observed patterns of change in acid-base status. PMID:15352446

  11. Pillow basalts of the Angayucham terrane: oceanic plateau and island crust accreted to the Brooks Range

    USGS Publications Warehouse

    Pallister, J.S.; Budahn, J.R.; Murchey, B.L.

    1989-01-01

    The Angayucham Mountains (north margin of the Yukon-Koyukuk province) are made up of an imbricate stack of four to eight east-west trending, steeply dipping, fault slabs composed of Paleozoic, Middle to Late Triassic, and Early Jurassic oceanic upper crustal rocks. Field relations and geochemical characteristics of the basaltic rocks suggest that the fault slabs were derived from an oceanic plateau or island setting and were emplaced onto the Brooks Range continental margin. The basalts are variably metamorphosed to prehnite-pumpellyite and low-greenschist facies. Major element analyses suggest that many are hypersthene-normative olivine tholeiites. The Triassic and Jurassic basalts are geochemically most akin to modern oceanic plateau and island basalts. Field evidence also favors an oceanic plateau or island setting. The great composite thickness of pillow basalt probably resulted from obduction faulting, but the lack of fault slabs of gabbro or peridotite suggests that obduction faults did not penetrate below oceanic layer 2, a likely occurrence if layer 2 were anomalously thick, as in the vicinity of an oceanic island. -from Authors

  12. Durable Superhydrophobic Surfaces via Spontaneous Wrinkling of Teflon AF.

    PubMed

    Scarratt, Liam R J; Hoatson, Ben S; Wood, Elliot S; Hawkett, Brian S; Neto, Chiara

    2016-03-01

    We report the fabrication of both single-scale and hierarchical superhydrophobic surfaces, created by exploiting the spontaneous wrinkling of a rigid Teflon AF film on two types of shrinkable plastic substrates. Sub-100 nm to micrometric wrinkles were reproducibly generated by this simple process, with remarkable control over the size and hierarchy. Hierarchical Teflon AF wrinkled surfaces showed extremely high water repellence (contact angle 172°) and very low contact angle hysteresis (2°), resulting in droplets rolling off the surface at tilt angles lower than 5°. The wrinkling process intimately binds the Teflon AF layer with its substrate, making these surfaces mechanically robust, as revealed by macroscale and nanoscale wear tests: hardness values were close to that of commercial optical lenses and aluminum films, resistance to scratch was comparable to commercial hydrophobic coatings, and damage by extensive sonication did not significantly affect water repellence. By this fabrication method the size of the wrinkles can be reproducibly tuned from the nanoscale to the microscale, across the whole surface in one step; the fabrication procedure is extremely rapid, requiring only 2 min of thermal annealing to produce the desired topography, and uses inexpensive materials. The very low roll-off angles achieved in the hierarchical surfaces offer a potentially up-scalable alternative as self-cleaning and drag-reducing coatings.

  13. Wild-Type U2AF1 Antagonizes the Splicing Program Characteristic of U2AF1-Mutant Tumors and Is Required for Cell Survival

    PubMed Central

    Fei, Dennis Liang; Motowski, Hayley; Chatrikhi, Rakesh; Gao, Shaojian; Kielkopf, Clara L.; Varmus, Harold

    2016-01-01

    We have asked how the common S34F mutation in the splicing factor U2AF1 regulates alternative splicing in lung cancer, and why wild-type U2AF1 is retained in cancers with this mutation. A human lung epithelial cell line was genetically modified so that U2AF1S34F is expressed from one of the two endogenous U2AF1 loci. By altering levels of mutant or wild-type U2AF1 in this cell line and by analyzing published data on human lung adenocarcinomas, we show that S34F-associated changes in alternative splicing are proportional to the ratio of S34F:wild-type gene products and not to absolute levels of either the mutant or wild-type factor. Preferential recognition of specific 3′ splice sites in S34F-expressing cells is largely explained by differential in vitro RNA-binding affinities of mutant versus wild-type U2AF1 for those same 3′ splice sites. Finally, we show that lung adenocarcinoma cell lines bearing U2AF1 mutations do not require the mutant protein for growth in vitro or in vivo. In contrast, wild-type U2AF1 is required for survival, regardless of whether cells carry the U2AF1S34F allele. Our results provide mechanistic explanations of the magnitude of splicing changes observed in U2AF1-mutant cells and why tumors harboring U2AF1 mutations always retain an expressed copy of the wild-type allele. PMID:27776121

  14. Identification and functional characterization of grass carp IL-17A/F1: An evaluation of the immunoregulatory role of teleost IL-17A/F1.

    PubMed

    Du, Linyong; Feng, Shiyu; Yin, Licheng; Wang, Xinyan; Zhang, Anying; Yang, Kun; Zhou, Hong

    2015-07-01

    In mammals, IL-17A and IL-17F are hallmark cytokines of Th17 cells which act significant roles in eradicating extracellular pathogens. IL-17A and IL-17F homologs nominated as IL-17A/F1-3 have been revealed in fish and their functions remain largely undefined. Here we identified and characterized grass carp IL-17A/F1 (gcIL-17A/F1) in fish immune system. In this regard, both tissue distribution and inductive expression of gcIL-17A/F1 indicated its possible involvement in immune response. Moreover, recombinant gcIL-17A/F1 (rgcIL-17A/F1) was prepared and displayed an ability to enhance pro-inflammatory cytokines (IL-1β, TNF-α and IL-6) mRNA expression in head kidney leukocytes. It is suggestive of that gcIL-17A/F1 may act as a proinflammatory cytokine in fish immunity. Besides, rgcIL-17A/F1 induced gene expression and protein release of grass carp chemokine CXCL-8 (gcCXCL-8) in head kidney cells (HKCs), probably via NF-κB, p38 and Erk1/2 pathways. In particular, culture medium from the HKCs treated by rgcIL-17A/F1 could stimulate peripheral blood leukocytes migration and immunoneutralization of endogenous gcCXCL-8 could partially attenuate this stimulation, suggesting that rgcIL-17A/F1 could recruit immune cells through producing gcCXCL-8 as mammalian IL-17 A and F. Taken together, we not only identified the pro-inflammatory role of gcIL-17A/F1 in host defense, but also provided the basis for clarifying Th17 cells in teleost. PMID:25847875

  15. Geochronology of the western and central Brooks Range, Alaska: Implications for the geologic evolution of the Anarraaq and Red Dog Zn-Pb-Ag deposits

    USGS Publications Warehouse

    Rombach, C.S.; Layer, P.W.

    2004-01-01

    A compilation of published geochronology of rocks and minerals from the western and central Brooks Range provides a framework for understanding the complex history of the Brooks Range and northern Alaska. A simplified timeline of events comprises (1) Devonian extension, (2) Mississippian extension and Zn-Pb-Ag mineralization, (3) a passive interval, (4) pre-Brooks Range orogeny rock-formation and thermal event, (5) inception of Brooks Range orogeny, (6) exhumation and the end of main-stage deformation, and (7) subsequent episodic deformation. This compilation is supplemented by new 40Ar/39Ar dates of white mica from the Anarraaq and Red Dog Zn-Pb-Ag (+ barite) deposits from the western Brooks Range. The deposits are hosted in black shale and carbonate rocks of the Late Mississippian-Early Pennsylvanian Kuna Formation. Quartz-pyrite-white mica grains in sedimentary rocks above the Anarraaq deposit yield an age of 195.0 ?? 2.0 Ma, and paragenetically late quartz-pyrite-white mica from the Main orebody at the Red Dog deposit has an age of 126.1 ?? 0.7 Ma. These white micas are much younger than the age of Zn-Pb-Ag mineralization at Red Dog (338 ?? 5.8 Ma Re-Os age of pyrite). The date for white mica from Anarraaq (???195 Ma) appears to be related to a large-scale thermal event in the region immediately before the inception of the Brooks Range orogeny. The white mica from the Red Dog deposit (???126 Ma) correlates with the later stages of the orogeny, a period of blueschist metamorphism, extension, and rapid exhumation, which varied with geographic location. These dates suggest that the Red Dog deposits underwent significant hydrothermal overprinting during multiple episodes of the Brooks Range orogeny. ?? 2004 by Economic Geology.

  16. Air Pollution

    MedlinePlus

    Air pollution is a mixture of solid particles and gases in the air. Car emissions, chemicals from factories, ... Ozone, a gas, is a major part of air pollution in cities. When ozone forms air pollution, it's ...

  17. Improvement and biological applications of fluorescent probes for zinc, ZnAFs.

    PubMed

    Hirano, Tomoya; Kikuchi, Kazuya; Urano, Yasuteru; Nagano, Tetsuo

    2002-06-12

    The development and cellular applications of novel fluorescent probes for Zn2+, ZnAF-1F, and ZnAF-2F are described. Fluorescein is used as a fluorophore of ZnAFs, because its excitation and emission wavelengths are in the visible range, which minimizes cell damage and autofluorescence by excitation light. N,N-Bis(2-pyridylmethyl)ethylenediamine, used as an acceptor for Zn2+, is attached directly to the benzoic acid moiety of fluorescein, resulting in very low quantum yields of 0.004 for ZnAF-1F and 0.006 for ZnAF-2F under physiological conditions (pH 7.4) due to the photoinduced electron-transfer mechanism. Upon the addition of Zn2+, the fluorescence intensity is quickly increased up to 69-fold for ZnAF-1F and 60-fold for ZnAF-2F. Apparent dissociation constants (K(d)) are in the nanomolar range, which affords sufficient sensitivity for biological applications. ZnAFs do not fluoresce in the presence of other biologically important cations such as Ca2+ and Mg2+, and are insensitive to change of pH. The complexes with Zn2+ of previously developed ZnAFs, ZnAF-1, and ZnAF-2 decrease in fluorescence intensity below pH 7.0 owing to protonation of the phenolic hydroxyl group of fluorescein, whose pKa value is 6.2. On the other hand, the Zn2+ complexes of ZnAF-1F and ZnAF-2F emit stable fluorescence around neutral and slightly acidic conditions because the pKa values are shifted to 4.9 by substitution of electron-withdrawing fluorine at the ortho position of the phenolic hydroxyl group. For application to living cells, the diacetyl derivative of ZnAF-2F, ZnAF-2F DA, was synthesized. ZnAF-2F DA can permeate through the cell membrane, and is hydrolyzed by esterase in the cytosol to yield ZnAF-2F, which is retained in the cells. Using ZnAF-2F DA, we could measure the changes of intracellular Zn2+ in cultured cells and hippocampal slices.

  18. Binding sites for two novel phosphoproteins, 3AF5 and 3AF3, are required for rbcS-3A expression.

    PubMed Central

    Sarokin, L P; Chua, N H

    1992-01-01

    Previous studies of boxes II (-151 to -138) and III (-125 to -114), binding sites for the nuclear factor GT-1 within the -166 deleted promoter of the ribulose-1,5-bisphosphate carboxylase-3A (rbcS-3A) gene, suggested that GT-1 might act in concert with an additional protein to confer light-responsive rbcS-3A expression. In this work, S1 analysis of RNA isolated from transgenic tobacco plants carrying mutant rbcS-3A constructs led to the identification of two short sequences located at the 5' and 3' ends of box III that are required for expression. These two sequences serve as binding sites for two novel proteins, 3AF5 and 3AF3. Gel shift studies using tetramerized binding sites for both 3AF5 and 3AF3 showed that complexes with faster mobilities were formed using nuclear extracts prepared from dark-adapted plants compared with those from light-grown tobacco plants. Phosphatase treatment of extracts from light-grown plants resulted in the formation of complexes with faster mobility. Although the binding of 3AF3 to its target site is dependent upon phosphorylation, the binding of 3AF5 does not appear to be affected by its phosphorylation state. These results suggest that the phosphorylated forms of both 3AF5 and 3AF3 are required for -166 rbcS-3A expression but that the mechanisms differ by which phosphorylation regulates the activities of 3AF5 and 3AF3. PMID:1498605

  19. Quantitative evaluation of macrophage aggregates in brook trout Salvelinus fontinalis and rainbow trout Oncorhynchus mykiss

    USGS Publications Warehouse

    Schwindt, Adam R.; Truelove, Nathan; Schreck, Carl B.; Fournie, John W.; Landers, Dixon H.; Kent, Michael L.

    2006-01-01

    Macrophage aggregates (MAs) occur in various organs of fishes, especially the kidney, liver and spleen, and contain melanin, ceroid/lipofuscin and hemosiderin pigments. They have been used as indicators of a number of natural and anthropogenic stressors. Macrophage aggregates occur in salmonids but are poorly organized, irregularly shaped, and are generally smaller than those in derived teleosts. These features complicate quantification, and thus these fishes have seldom been used in studies correlating MAs with environmental stressors. To alleviate these complications, we developed color filtering algorithms for use with the software package ImagePro Plus® (Media Cybernetics) that select and quantify pigmented area (i.e. colors ranging from gold to brown to black) in tissue sections. Image analysis results compared well with subjective scoring when tested on brook trout Salvelinus fontinalis and rainbow trout Oncorhynchus mykiss captured from high-elevation lakes or hatcheries. Macrophage aggregate pigments correlated positively with age and negatively with condition factor. Within individual fish, pigmentation correlated positively among organs, suggesting that the kidney, liver or spleen are suitable indicator organs. In age-matched fishes, MA pigments were not different between hatcheries and lakes in the organs examined. Between lakes, differences in pigments were observed in the kidney and spleen, but were not explained by age, condition factor, sex or maturation state. Our results indicate that quantification of the area occupied by MA pigments is an efficient and accurate means of evaluating MAs in salmonid organs and that organ pigmentation correlates with age and condition factor, as seen in studies with more derived fishes. 

  20. Effects of chronic ammonium sulfate treatment on the forest at the Bear Brook Watershed in Maine.

    PubMed

    Elvir, Jose Alexander; Wiersma, G Bruce; Bethers, Suzanne; Kenlan, Peter

    2010-12-01

    At the Bear Brook Watershed in Maine (BBWM), the forest tree composition was characterized and the effects of the chronic ammonium sulfate ((NH(4))(2)SO(4)) treatment on basal area growth, foliar chemistry, and gas exchange were investigated on forest species. The BBWM is a paired watershed forest ecosystem study with one watershed, West Bear (WB), treated since 1989 with 26.6 kg N ha(-1) year(-1) and 30 kg S ha(-1) year(-1)applied bimonthly as (NH(4))(2)SO(4), while the other watershed, East Bear (EB), serves as a reference. Tree species richness, density, and mortality were found to be similar between watersheds. Basal area increment was estimated from red spruce and sugar maple, showing that, for the first 7 years of treatment, it was significantly higher for sugar maple growing in WB compared to EB, but no differences were observed for red spruce between watersheds. However, the initial higher sugar maple basal area growth in WB subsequently decreased after 8 years of treatment. Foliar chemical analysis performed in trees, saplings, and ground flora showed higher N concentrations in the treated WB compared to the reference EB. But, foliar cation concentrations, especially Ca and Mg, were significantly lower for most of the species growing in WB compared with those growing in EB. For sugar maple, foliar N was higher on WB, but there were no differences in foliar Ca and Mg concentrations between treated and reference watersheds. In addition, only sugar maple trees in the treated WB showed significantly higher photosynthetic rates compared to reference EB trees.

  1. The evolution of the science of Bear Brook Watershed in Maine, USA.

    PubMed

    Norton, S A; Fernandez, I J; Kahl, J S; Rustad, L E; Navrátil, Tomás; Almquist, H

    2010-12-01

    The Bear Brook Watershed in Maine (BBWM), USA is a paired watershed study with chemical manipulation of one watershed (West Bear = WB) while the other watershed (East Bear = EB) serves as a reference. Characterization of hydrology and chemical fluxes occurred in 1987-1989 and demonstrated the similarity of the ca. 10 ha adjacent forested watersheds. From 1989-2010, we have added 1,800 eq (NH(4))(2)SO(4) ha(-1) y(-1) to WB. EB runoff has slowly acidified even as atmospheric deposition of SO4(-2) has declined. EB acidification included decreasing pH, base cation concentrations, and alkalinity, and increasing inorganic Al concentration, as SO4(-2) declined. Organic Al increased. WB has acidified more rapidly, including a 6-year period of increasing leaching of base cations, followed by a long-term decline of base cations, although still elevated over pretreatment values, as base saturation declined in the soils. Sulfate in WB has not increased to a new steady state because of increased anion adsorption accompanying soil acidification. Dissolved Al has increased dramatically in WB; increased export of particulate Al and P has accompanied the acidification in both watersheds, WB more than EB. Nitrogen retention in EB increased after 3 years of study, as did many watersheds in the northeastern USA. Nitrogen retention in WB still remains at over 80%, in spite of 20+ years of N addition. The 20-year chemical treatment with continuous measurements of critical variables in both watersheds has enabled the identification of decadal-scale processes, including ecosystem response to declining SO4(-2) in ambient precipitation in EB and evolving mechanisms of treatment response in WB. The study has demonstrated soil mechanisms buffering pH, declines in soil base saturation, altered P biogeochemistry, unexpected mechanisms of storage of S, and continuous high retention of treatment N.

  2. Linking water age and solute dynamics in streamflow at the Hubbard Brook Experimental Forest, NH, USA

    NASA Astrophysics Data System (ADS)

    Benettin, Paolo; Bailey, Scott W.; Campbell, John L.; Green, Mark B.; Rinaldo, Andrea; Likens, Gene E.; McGuire, Kevin J.; Botter, Gianluca

    2015-11-01

    We combine experimental and modeling results from a headwater catchment at the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA, to explore the link between stream solute dynamics and water age. A theoretical framework based on water age dynamics, which represents a general basis for characterizing solute transport at the catchment scale, is here applied to conservative and weathering-derived solutes. Based on the available information about the hydrology of the site, an integrated transport model was developed and used to compute hydrochemical fluxes. The model was designed to reproduce the deuterium content of streamflow and allowed for the estimate of catchment water storage and dynamic travel time distributions (TTDs). The innovative contribution of this paper is the simulation of dissolved silicon and sodium concentration in streamflow, achieved by implementing first-order chemical kinetics based explicitly on dynamic TTD, thus upscaling local geochemical processes to catchment scale. Our results highlight the key role of water stored within the subsoil glacial material in both the short-term and long-term solute circulation. The travel time analysis provided an estimate of streamflow age distributions and their evolution in time related to catchment wetness conditions. The use of age information to reproduce a 14 year data set of silicon and sodium stream concentration shows that, at catchment scales, the dynamics of such geogenic solutes are mostly controlled by hydrologic drivers, which determine the contact times between the water and mineral interfaces. Justifications and limitations toward a general theory of reactive solute circulation at catchment scales are discussed.

  3. Conodont biostratigraphy and biofacies of the Wahoo Limestone (Carboniferous), Sadlerochit Mountains, northeast Brooks Range, Alaska

    SciTech Connect

    Krumhardt, A.P. ); Harris, A.G. )

    1990-05-01

    The Wahoo Limestone forms the upper part of the Lisburne Group (Carboniferous) in the Sadlerochit Mountains. The Lisburne Group is a thick (> 600 m) sequence of platform carbonate rocks that extends across the Brooks Range of northern Alaska and beneath the North Slope. At Prudhoe Bay, the Lisburne Group forms a major hydrocarbon reservoir. In the easternmost Sadlerochit Mountains, the Wahool Limestone is divisible into informal lower (64 m) and upper (192 m) members. The basal 46 m is chiefly bryozoan and pelmatozoan packstone that formed on a relatively shallow platform during the latest Mississippian lower muricatus subzone (as shown by the occurrence of the zonal index with representatives of Cavusgnathus). Cavusgnathus is dominant in this part of the section and occurs with representatives of Kladognathus, Ghathodus, Adetognathus, Hindeodus, and Rhachistognathus (in order of decreasing abundance). Declinognathodus noduliferus, the index for the base of the Pennsylvanian, first occurs at 49 m above the base of the Wahoo and 1 m above a discontinuity surface that marks the Mississippian-Pennsylvanian boundary. The unconformity represents the highest conodont subzone of the Mississippian and probably part of the earliest Pennsylvanian. Previously, the Mississippian-Pennsylvanian boundary was placed t the lower-upper Wahoo contact based on endothyroids; conodont data now indicate that this boundary is 15 m lower. The remaining lower Wahoo is possibly of noduliferus-primus zone age and chiefly yields, in order of decreasing abundance, species of Adetognathus, Declinognathodus, and Rhachistognathus, as well as redeposited Mississipian conodonts. The lower 15 m of the upper member of the Wahoo contains silty (5-40%) carbonate rock types that yield very few conodonts. Conodonts no older than the minutus-sinuatus zone are relatively abundant from 15 to 106 m above the base of the upper Wahoo.

  4. Frozen debris lobe morphology and movement: an overview of eight dynamic features, southern Brooks Range, Alaska

    NASA Astrophysics Data System (ADS)

    Darrow, Margaret M.; Gyswyt, Nora L.; Simpson, Jocelyn M.; Daanen, Ronald P.; Hubbard, Trent D.

    2016-05-01

    Frozen debris lobes (FDLs) are elongated, lobate permafrost features that mostly move through shear in zones near their bases. We present a comprehensive overview of eight FDLs within the Dalton Highway corridor (southern Brooks Range, Alaska), including their catchment geology and rock strengths, lobe soil characteristics, surface movement measurements collected between 2012 and 2015, and analysis of historic and modern imagery from 1955 to 2014. Field mapping and rock strength data indicate that the metasedimentary and metavolcanic bedrock forming the majority of the lobe catchments has very low to medium strength and is heavily fractured, thus easily contributing to FDL formation. The eight investigated FDLs consist of platy rocks typical of their catchments, organic debris, and an ice-poor soil matrix; massive ice, however, is present within FDLs as infiltration ice, concentrated within cracks open to the surface. Exposure of infiltration ice in retrogressive thaw slumps (RTSs) and associated debris flows leads to increased movement and various stages of destabilization, resulting in morphological differences among the lobes. Analysis of historic imagery indicates that movement of the eight investigated FDLs has been asynchronous over the study period, and since 1955, there has been an overall increase in movement rates of the investigated FDLs. The formation of surface features, such as cracks, scarps, and RTSs, suggests that the increased movement rates correlate to general instability, and even at their current distances, FDLs are impacting infrastructure through increased sediment mobilization. FDL-A is the largest of the investigated FDLs. As of August 2015, FDL-A was 39.2 m from the toe of the Dalton Highway embankment. Based on its current distance and rate of movement, we predict that FDL-A will reach the Dalton Highway alignment by 2023.

  5. Hubbard Brook Ecosystem Study: biogeochemistry of lead in the northern hardwood forest

    SciTech Connect

    Smith, W.; Siccama, T.G.

    1981-09-01

    The average annual Pb input to the northern hardwood forest at the Hubbard Brook Experimental Forest in central New Hampshire was 266 g ha/sup -1/ year /sup -1/ based on 4 years of records. Lead output via streamwater and eroded particulate matter was 5.0 and 1.1 g ha/sup -1/ year/sup -1/, respectively. Lead concentration in precipitation averaged 22 ..mu..g liter/sup -1/ and showed a significant decline over the 4 sample years (1975 to 1978). Lead input to the ecosystem via meteorological vectors is accumulated in the forest floor. Total current Pb content of the forest floor was 8.6 kg ha/sup -1/ and showed no significant differences along the elevation gradient of the watershed (400 to 800 m). Lead concentration in the forest floor was maximum on the ridge due to a minimum forest floor mass relative to the rest of the watershed. Within the forest floor, maximum Pb concentration is in the fermented (F) layer. Total Pb content of the forest biomass (stems greater than or equal to 10 cm dbh) was 1248 g ha/sup -1/. Lead concentration in the biota was in the following order: lichens (213 ..mu..g g/sup -1/) > mosses (190 ..mu..g g/sup -1/) tree twigs (26 ..mu..g g/sup -1/) > roots (20 ..mu..g g/sup -1/) > bark (19 ..mu..g g/sup -1/) > leaves (7 ..mu..g g/sup -1/) = bracket fungi (7 ..mu..g g/sup -1/) > wood (0.7 ..mu..g g/sup -1/). Disturbance of the forest ecosystem through harvest cutting, other than through increased runoff, increased erosion, and transport of particulate matter, does not alter the biogeochemistry of Pb and does not result in increased mobility and export of Pb due to gross or subtle alterations of the behavior of Pb in the ecosystem.

  6. Multistory duplexes with forward dipping roofs, north central Brooks Range, Alaska

    USGS Publications Warehouse

    Wallace, W.K.; Moore, T.E.; Plafker, G.

    1997-01-01

    The Endicott Mountains allochthon has been thrust far northward over the North Slope parautochthon in the northern Brooks Range. Progressively younger units are exposed northward within the allochthon. To the south, the incompetent Hunt Fork Shale has thickened internally by asymmetric folds and thrust faults. Northward, the competent Kanayut Conglomerate forms a duplex between a floor thrust in Hunt Fork and a roof thrust in the Kayak Shale. To the north, the competent Lisburne Group forms a duplex between a floor thrust in Kayak and a roof thrust in the Siksikpuk Formation. Both duplexes formed from north vergent detachment folds whose steep limbs were later truncated by south dipping thrust faults that only locally breach immediately overlying roof thrusts. Within the parautochthon, the Kayak, Lisburne, and Siksikpuk-equivalent Echooka Formation form a duplex identical to that in the allochthon. This duplex is succeeded abruptly northward by detachment folds in Lisburne. These folds are parasitic to an anticlinorium interpreted to reflect a fault-bend folded horse in North Slope "basement," with a roof thrust in Kayak and a floor thrust at depth. These structures constitute two northward tapered, internally deformed wedges that are juxtaposed at the base of the allochthon. Within each wedge, competent units have been shortened independently between detachments, located mainly in incompetent units. The basal detachment of each wedge cuts upsection forward (northward) to define a wedge geometry within which units dip regionally forward. These dips reflect forward decrease in internal structural thickening by forward vergent folds and hindward dipping thrust faults. Copyright 1997 by the American Geophysical Union.

  7. Habitat preferences of Ukrainian brook lamprey Eudontomyzon mariae ammocoetes in the lowland rivers of Central Europe.

    PubMed

    Jażdżewski, M; Marszał, L; Przybylski, M

    2016-02-01

    The pattern of microhabitat preferences of Ukrainian brook lamprey Eudontomyzon mariae ammocoetes was examined in two rivers of central Poland: the Pilica River (the Vistula River basin) and the Grabia River (the Odra River basin). A comparison of abiotic factors of the rivers revealed differences in water speed and principal components: PC1 (determining gradient from decreasing medium sand to the increasing share of three fractions of gravel), PC2 (a gradient from the declining share of very coarse and coarse sand fractions to the growing content of fine sand) and PC3 (correlated with an increasing proportion of silt). The sites did not differ significantly in terms of water depth. Relative abundance and frequency of ammocoete occurrence in the Grabia River were higher than in the Pilica River. Only speed, PC1 and PC2 made a significant contribution to the prediction of larval occurrence. Eudontomyzon mariae larvae preferred substrata with a reduced amount of medium sand and increased content of gravel (PC1) as well as with a lower content of coarse sand and higher proportion of fine-grained sand (PC2). The ammocoetes also preferred areas with a water speed of 0·2 m s(-1) but avoided speeds ≥ 0·6 m s(-1). The abundance of E. mariae was affected by water speed, as well as by all PCs. The mean ± s.e. optimal current speed was 0·265 ± 0·007 m s(-1), while abundance decreased with increasing amounts of gravel (PC1) and increased with increasing amounts of fine sand and silt in the bottom substratum (PC2 and PC3). Comparison of ammocoete microhabitat use in the Pilica and Grabia Rivers showed the lack of differences in distribution in the preferred values of current speed, PC1 and PC2.

  8. Streamflow variability and hydroclimatic change at the Bear Brook Watershed in Maine (BBWM), USA.

    PubMed

    Kim, Jong-Suk; Jain, Shaleen; Norton, Stephen A

    2010-12-01

    Seasonal variations in streamflow and the associated hydrologic extremes impart significant temporal structure to watershed-scale chemical fluxes. Consequently, a careful characterization of the episodic-to-seasonal and longer-term streamflow variations is a first step toward developing a comprehensive view of the temporal dynamics of watershed processes in a changing climate. Here we analyze a nearly two-decade-long streamflow record for the East Bear subwatershed within the Bear Brook Watershed in Maine (BBWM) (USA) to understand the envelope of streamflow variability by season, with a particular focus on the high flow events that have a disproportionately large impact on the biogeochemical processes and fluxes. Interannual and longer-term variations in a number of derived statistical metrics of hydrologic variability are examined. Our analysis shows substantial interannual and longer-term variability in seasonal flow volumes and peak flows. Furthermore, a long, unimpaired streamflow record for the Narraguagus River (a proximate watershed to the BBWM) is examined with a view to understand the relative coherence in hydrologic variability, as well as quantifying the decadal and longer-term hydrologic variations in this region. We find that the streamflow variability in the two watersheds shows similarity in all seasons. A moving window analysis to assess the changing flood potential over time indicates upward trends in the recent decades. Spring season (March-May) flood estimates show a near-monotonic trend over the 1949-2008 record. Finally, empirical relationships between streamflow and large-scale atmospheric circulation patterns highlight the regional and global climatic drivers of hydrologic extremes in this region, including impacts from remnants of Atlantic hurricanes.

  9. Meteoroid stream of 12P/Pons-Brooks, December κ-Draconids, and Northern June Aquilids

    NASA Astrophysics Data System (ADS)

    Tomko, D.; Neslušan, L.

    2016-08-01

    Context. It was found that some parent bodies of meteoroid streams can be related to more than one meteor shower observable in the atmosphere of Earth. The orbits of the members of such showers must evolve to the locations, which are far from the orbit of their parent, to cross the orbit of the Earth. An extensive simulation of the stream evolution is necessary to reveal such a complex of showers of the given parent body. Aims: We continue the investigation of the evolution of the theoretical stream originating from the comet 12P/Pons-Brooks to understand its meteor-shower complex in more detail. Methods: We model a theoretical comet stream assuming an ejection of 10 000 particles, representing the meteoroids, from its nucleus in several past perihelion passages. Adding to our previous work, here we also consider the Poynting-Robertson drag in our study of the particles' dynamics. The orbits currently occurring in a vicinity of the Earth's orbit are used to predict the showers associated with comet 12P. Results: Two nighttime and two daytime showers are predicted to originate from 12P. The showers must consist of only relatively large particles, which are influenced to only a small extent by the Poynting-Robertson drag, because in this case, it deflects the particles from the collisional course with the Earth when efficient. The shower predicted to have the most particles is the nighttime shower, which can clearly be identified to the December κ-Draconids, No. 336 in the IAU MDC list. Another predicted nighttime shower has no counterpart in the considered observational data. Some characteristics of this shower are vaguely similar to those of Northern June Aquilids, No. 164. The observed counterparts of two predicted daytime showers were not found in the observational data we used or in the IAU MDC list.

  10. Caledonian Deformation in Polydeformed Pre-Mississippian Rocks of the Northeast Brooks Range, Alaska

    NASA Astrophysics Data System (ADS)

    Johnson, B. G.; Toro, J.; Benowitz, J.

    2013-12-01

    In the northeastern Brooks Range of Alaska there are polydeformed metasedimentary and metavolcanic rocks exposed below a major pre-Mississippian unconformity. Elsewhere in northern Alaska it has been challenging to correlate the tectonic fabrics of these early Paleozoic to Neoproterozoic rocks to the different orogenic events of the Arctic because of the strong overprint of Mesozoic and Tertiary Brookian deformation. However, our recent field investigations along the Kongakut and Aichiklik rivers of ANWR have identified an older (pre-Brookian) structural event based on the orientation of penetrative cleavage planes and a contrast in folding style to Brookian structures. Many of the cleavage planes are north dipping and orientated parallel to the axial planes of south-vergent folds. Although metamorphic grade is generally low, in localized areas the cleavage planes contain white micas, whose petrologic and isotopic characteristics indicate that they crystallized during fabric formation. 40Ar/39Ar dating of the white micas yield a metamorphic age of ~400 Ma (Early Devonian). This is evidence for a south-directed structural event which is contemporaneous with Caledonian deformation in East Greenland and Svalbard. Stratigraphicaly, the basement consists of a diverse package of highly deformed marine clastic sediments, and a thick section of basaltic to andesitic flows and volcaniclastic rocks, the Whale Mountain volcanics, which have a sharp southern contact but grade northward and upwards into the clastic rocks. All units are metamorphosed to lower greenschist facies. We are currently investigating the age and geochemical characteristics of the Whale Mountain volcanics to determine their tectonic affinity and role in the assemblage of the North Slope block of Northern Alaska.

  11. Flood of October 8 and 9, 2005, on Cold River in Walpole, Langdon, and Alstead and on Warren Brook in Alstead, New Hampshire

    USGS Publications Warehouse

    Olson, Scott A.

    2006-01-01

    Southwestern New Hampshire experienced damaging flooding on October 8 and 9, 2005. The flooding was the result of a storm producing at least 7 inches of rain in a 30-hour period. The heavy, intense rainfall resulted in runoff and severe flooding, especially in regions of steep topography that are vulnerable to flash flooding. Some of the worst property damage was in the towns of Alstead, Langdon, and Walpole, New Hampshire along Cold River and Warren Brook. Warren Brook was severely flooded and had flows that exceeded a 100-year recurrence interval upstream of Cooper Hill Road. Downstream of Cooper Hill Road, the flooding was worsened as a result of a sudden release of impounded water, making the flood levels greater than what would be experienced from a 500-year recurrence-interval flood. Along Cold River, upstream of its confluence with Warren Brook, flooding was at approximately a 100-year recurrence interval. Downstream of the confluence of Cold River and Warren Brook, the streamflows, which were swollen by the surge of water from Warren Brook, exceeded a 500year recurrence interval.

  12. The Advancing State of AF-M315E Technology

    NASA Technical Reports Server (NTRS)

    Masse, Robert; Spores, Ronald A.; McLean, Chris

    2014-01-01

    The culmination of twenty years of applied research in hydroxyl ammonium nitrate (HAN)-based monopropellants, the NASA Space Technology mission Directorate's (STMD) Green Propellant Infusion Mission (GPIM) will achieve the first on-orbit demonstration of an operational AF-M315E green propellant propulsion system by the end of 2015. Following an contextual overview of the completed flight design of the GPIM propellant storage and feed system, results of first operation of a flight-representative heavyweight 20-N engineering model thruster (to be conducted in mid-2014) are presented with performance comparisons to prior lab model (heavyweight) test articles.

  13. Organic Compounds in Running Gutter Brook Water Used for Public Supply near Hatfield, Massachusetts, 2003-05

    USGS Publications Warehouse

    Brown, Craig J.; Trombley, Thomas J.

    2009-01-01

    The 258 organic compounds studied in this U.S. Geological Survey (USGS) assessment generally are man-made, including pesticides, solvents, gasoline hydrocarbons, personal-care and domestic-use products, and pavement and combustion-derived compounds. Of these 258 compounds, 26 (about 10 percent) were detected at least once among the 31 samples collected approximately monthly during 2003-05 at the intake of a flowthrough reservoir on Running Gutter Brook in Massachusetts, one of several community water systems on tributaries of the Connecticut River. About 81 percent of the watershed is forested, 14 percent is agricultural land, and 5 percent is urban land. In most source-water samples collected at Running Gutter Brook, fewer compounds were detected and their concentrations were low (less than 0.1 micrograms per liter) when compared with compounds detected at other stream sites across the country that drain watersheds that have a larger percentage of agricultural and urban areas. The relatively few compounds detected at low concentrations reflect the largely undeveloped land use at Running Gutter Brook. Despite the absence of wastewater discharge points on the stream, however, the compounds that were detected could indicate different sources and uses (point sources, precipitation, domestic, and agricultural) and different pathways to drinking-water supplies (overland runoff, groundwater discharge, leaking of treated water from distribution lines, and formation during treatment). Six of the 10 compounds detected most commonly (in at least 20 percent of the samples) in source water also were detected commonly in finished water (after treatment but prior to distribution). Concentrations in source and finished water generally were below 0.1 micrograms per liter and always less than humanhealth benchmarks, which are available for about one-half of the compounds detected. On the basis of this screening-level assessment, adverse effects to human health are expected to be

  14. AF64A-induced brain damage and its relation to dementia.

    PubMed

    Hörtnagl, H

    1994-01-01

    Several data obtained in the AF64A-model are of particular relevance for our understanding of the pathogenesis and progression of Alzheimer's disease. The AF64A-induced withdrawal of cholinergic function in the rat hippocampus was associated with reversible functional changes in other neurotransmitters, including noradrenaline, serotonin, somatostatin and glutamate, thereby mimicking changes in Alzheimer's disease. Identical changes in markers for synaptic vesicles were found in Alzheimer's disease and AF64A-model. A study on the role of gender revealed a higher susceptibility to the neurotoxic action of AF64A in female rats. The cholinergic deficit was also responsible for a disinhibition of the negative feedback regulation of glucocorticoids. Increased exposure to glucocorticoids, however, enhanced the vulnerability of hippocampal cholinergic neurons to AF64A. These data indicate that the AF64A-induced cholinergic deficit in the rat brain represents a reliable tool to study several mechanisms possibly involved in Alzheimer's disease.

  15. Level II scour analysis for bridge 2 (WODFTH00010002) on Town Highway 1, crossing Hell Hollow Brook, Woodford, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.; Degnan, James R.

    1998-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure WODFTH00010002 on Town Highway 1 crossing Hell Hollow Brook, Woodford, Vermont (figures 1-8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (FHWA, 1993). Results of a Level I scour investigation also are included in appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in appendix D.

  16. ERDA/NASA 100 kilowatt mod-o wind turbine operations and performance. [at the NASA Plum Brook Station, Ohio

    NASA Technical Reports Server (NTRS)

    Thomas, R. L.; Richards, T. R.

    1977-01-01

    The ERDA/NASA 100 kW Mod-0 wind turbine is operating at the NASA Plum Brook Station near Sandusky, Ohio. The operation of the wind turbine has been fully demonstrated and includes start-up, synchronization to the utility network, blade pitch control for control of power and speed, and shut-down. Also, fully automatic operation has been demonstrated by use of a remote control panel, 50 miles from the site, similar to what a utility dispatcher might use. The operation systems and experience with the wind turbine loads, electrical power and aerodynamic performance obtained from testing are described.

  17. Observations on communities of brook and brown trout separated by an upstream movement barrier on the Firehole River

    SciTech Connect

    Kaeding, L.R.

    1980-07-01

    Division of a fluvial fish community by stream impoundment can give rise to dissimilar upstream and downstream assemblages which may themselves differ from the original community. These changes are often ascribed to the modification of physical habitat or water quality. Less well documented are effects on fluvial fish communities of an upstream-1 movement barrier alone. Observations were made on contrasting communities of brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta) separated by Kepler Cascades in the Firehole River of Yellowstone National Park, Wyoming, a series of waterfalls that form an upstream-movement barrier. (ACR)

  18. A serologic survey for antibodies to three canine viruses in wolverines (Gulo gulo) from the Brooks Range, Alaska.

    PubMed

    Dalerum, Fredrik; Shults, Brad; Kunkel, Kyran

    2005-10-01

    Canine distemper virus (CDV), canine parvovirus type 2 (CPV-2), and canine adenovirus type 1 (CAV-1) are pathogens that are typically associated with canids but may cause serious disease in a wide range of other carnivores. From 1998 to 2002, serum samples from 64 wolverines (Gulo gulo) from the Brooks Range, Alaska, were tested for antibodies to CDV, CPV-2, and canine adenovirus (CAV). Four animals tested positive for antibodies to CDV (7%), one for antibodies to CPV-2 (2%), and none for antibodies to CAV. These are similar to antibody prevalence estimates for other large and medium carnivores in North America. PMID:16456170

  19. Potential tight gas resources in a frontier province - Jurassic through Tertiary strata beneath the Brooks Range foothills, Arctic Alaska

    USGS Publications Warehouse

    Nelson, Philip H.; Bird, Kenneth J.; Houseknecht, David W.; Potter, Christopher J.; Moore, Thomas E.

    2006-01-01

    Beneath the foothills of the Brooks Range, rocks of the Lower Cretaceous-Tertiary Brookian and Jurassic-Lower Cretaceous Beaufortian megasequences have been deeply buried and exhumed, and now exhibit characteristics of 'tight gas sandstones'. The data recovered from drilling, well tests, and cores exhibit the potential for substantial gas reserves over a large area. These data include recovery of gas from drillstem tests, indications of overpressure from well tests and mud weights, low porosity and permeability in sandstones, and vitrinite reflectance values ranging from 1.0 to 2.0 percent throughout substantial depth intervals.

  20. Analysis of brook trout spatial behavior during passage attempts in corrugated culverts using near-infrared illumination video imagery

    USGS Publications Warehouse

    Bergeron, Normand E.; Constantin, Pierre-Marc; Goerig, Elsa; Castro-Santos, Theodore R.

    2016-01-01

    We used video recording and near-infrared illumination to document the spatial behavior of brook trout of various sizes attempting to pass corrugated culverts under different hydraulic conditions. Semi-automated image analysis was used to digitize fish position at high temporal resolution inside the culvert, which allowed calculation of various spatial behavior metrics, including instantaneous ground and swimming speed, path complexity, distance from side walls, velocity preference ratio (mean velocity at fish lateral position/mean crosssectional velocity) as well as number and duration of stops in forward progression. The presentation summarizes the main results and discusses how they could be used to improve fish passage performance in culverts.

  1. The Mothball, Sustainment, and Proposed Reactivation of the Hypersonic Tunnel Facility (HTF) at NASA Glenn Research Center Plum Brook Station

    NASA Technical Reports Server (NTRS)

    Thomas, Scott R.; Lee, Jinho; Stephens, John W.; Hostler, Robert W., Jr.; VonKamp, William D.

    2010-01-01

    The Hypersonic Tunnel Facility (HTF) located at the NASA Glenn Research Center s Plum Brook Station in Sandusky, Ohio, is the nation s only large-scale, non-vitiated, hypersonic propulsion test facility. The HTF, with its 4-story graphite induction heater, is capable of duplicating Mach 5, 6, and 7 flight conditions. This unique propulsion system test facility has experienced several standby and reactivation cycles. The intent of the paper is to overview the HTF capabilities to the propulsion community, present the current status of HTF, and share the lessons learned from putting a large-scale facility into mothball status for a later restart

  2. Fabrication of (U, Zr) C-fueled/tungsten-clad specimens for irradiation in the Plum Brook Reactor Facility

    NASA Technical Reports Server (NTRS)

    1972-01-01

    Fuel samples, 90UC - 10 ZrC, and chemically vapor deposited tungsten fuel cups were fabricated for the study of the long term dimensional stability and compatibility of the carbide-tungsten fuel-cladding systems under irradiation. These fuel samples and fuel cups were assembled into the fuel pins of two capsules, designated as V-2E and V-2F, for irradiation in NASA Plum Brook Reactor Facility at a fission power density of 172 watts/c.c. and a miximum cladding temperature of 1823 K. Fabrication methods and characteristics of the fuel samples and fuel cups prepared are described.

  3. Lithostratigraphy, microlithofacies, and conodont biostratigraphy and biofacies of the Wahoo Limestone (Carboniferous), eastern Sadlerochit Mountains, Northeast Brooks Range, Alaska

    USGS Publications Warehouse

    Krumhardt, A.P.; Harris, A.G.; Watts, K.F.

    1996-01-01

    The lithostratigraphy, microlithofacies, and conodonts are described in a key section of the Wahoo Limestone (Middle Carboniferous); this unit forms a hydrocarbon reservoir at Prudhoe Bay. The Wahoo was deposited in a range of environments on the inner part of a high-energy carbonate ramp. Microfacies and conodont biofacies used together refine paleoenvironmental interpretations. Only 24 conodont species distributed among 14 genera were recognized in a section that spans about 10 million years. Significant conodont collections from the Wahoo across the Northeast Brooks Range are described in an appendix.

  4. Factors Affecting the Pattern of Vegetation Biomass and Canopy Height With Elevation at Hubbard Brook Experimental Forest

    NASA Astrophysics Data System (ADS)

    Schilz, M. H.; Hurtt, G. C.

    2005-12-01

    Understanding patterns of carbon stocks and fluxes on the land surface is important for studies of terrestrial ecology, the carbon cycle, and climate change and is an increasingly high priority for environmental policymakers. This need is especially relevant in areas of mountainous terrain, where methodological challenges limit the usefulness of atmospheric methods such as eddy covariance. At the Hubbard Brook Experimental Forest (White Mountains, New Hampshire), both field data and remote sensing data demonstrate that forests exhibit decreased height and biomass with elevation. In particular, aboveground biomass (AGB) values decline from an average of 280 mg/ha at 250 meters elevation to 145 mg/ha at 910 meters elevation. Correspondingly, average canopy height declines from 28 meters to 15 meters within the same elevational range. Although this trend is well documented by field and LiDar data, the relative influence of various causal factors has not been well established. Potential mechanisms include increased rates of disturbance and mortality, decreased rates of growth and changes in tree allometry. These factors may in turn be influenced by changes in water and nutrient availability, edaphic factors, and climate. This study examines the relative importance of these mechanisms through 2 objectives; statistical analysis of existing Hubbard Brook data and collection and analysis of additional field data. Our analysis of 1999 LiDar data indicates that differences in slope and aspect do not explain the AGB and height trend. Analysis of ground based measurements of tree diameters (DBH) and remote sensing measurements of tree height suggest that allometric changes are not responsible for the observed trends. To evaluate the remaining hypothesis of growth, mortality, and disturbance, we obtained and analyzed 371 previously collected tree cores. Using a stratified random sampling design based on LiDar data, 108 additional tree cores have been collected to better

  5. Characterization of Soil Organic Matter from African Dark Earth (AfDE) Soils

    NASA Astrophysics Data System (ADS)

    Plante, A. F.; Fujiu, M.; Ohno, T.; Solomon, D.; Lehmann, J.; Fraser, J. A.; Leach, M.; Fairhead, J.

    2014-12-01

    Anthropogenic Dark Earths are soils generated through long-term human inputs of organic and pyrogenic materials. These soils were originally discovered in the Amazon, and have since been found in Australia and in this case in Africa. While tropical soils are typically characterized by low soil organic matter (SOM) concentrations, African Dark Earths (AfDE) are black, highly fertile and carbon-rich soils formed through an extant but ancient soil management system. The objective of this study was to characterize the organic matter accumulated in AfDE and contrast it with non-AfDE soils. Characterization of bulk soil organic matter of several (n=11) AfDE and non-AfDE pairs of surface (0-15 cm) soils using thermal analysis techniques (TG-DSC-EGA) resulted in substantial differences in SOM composition and the presence of pyrogenic C. Such pyrogenic organic matter is generally considered recalcitrant, but the fertility gains in AfDE are generated by labile, more rapidly cycling pools of SOM. As a result, we characterized hot water- and pyrophosphate-extractable pools of SOM using fluorescence (EEM/PARAFAC) and high resolution mass spectrometry (FT-ICR-MS). EEM/PARAFAC data suggests that AfDE samples had a greater fraction of their DOM that was more humic-like than the paired non-AfDE samples. Similarly, FT-ICR-MS analyses of extracts suggest that differences among the sites analyzed were larger than between the paired AfDE and non-AfDE extracts. Overall, in spite of substantial differences in the composition of bulk SOM, the extractable fractions appear to be relatively similar between the AfDE and non-AfDE soils.

  6. MicroRNA-205 downregulates mixed-lineage-AF4 oncogene expression in acute lymphoblastic leukemia

    PubMed Central

    Dou, Liping; Li, Jingxin; Zheng, Dehua; Li, Yonghui; Gao, Xiaoning; Xu, Chengwang; Gao, Li; Wang, Lili; Yu, Li

    2013-01-01

    Myeloid/lymphoid or mixed-lineage AF4 acute lymphoblastic leukemia (MLL-AF4 ALL) is a pediatric leukemia that occurs rarely in adults. MLL-AF4 ALL is typically characterized by the presence of chromosomal translocation (t(4;1l)(q21;q23)), leading to expression of MLL-AF4 fusion protein. Although MLL-AF4 fusion protein triggers a molecular pathogenesis and hematological presentations that are unique to leukemias, the precise role of this oncogene in leukemogenesis remains unclear. Previous studies have indicated that microRNAs (miRs) might modulate the expression of MLL-AF4 ALL fusion protein, thereby suggesting the involvement of miR in progression or suppression of MLL-AF4 ALL. We have previously demonstrated that miR-205 negatively regulates transcription of an MLL-AF4 luciferase reporter. Here, we report that exogenous expression of miR-205 in MLL-AF4 human cell lines (RS4;11 and MV4-11) inversely regulates the expression of MLL-AF4 at both messenger RNA (mRNA) and protein level. Furthermore, miR-205 significantly induced apoptosis in MLL-AF4 cells as evidenced by Annex in V staining using fluorescence-activated cell sorting (FACS) analysis. The proliferative capacity of leukemic cells was suppressed by miR-205. The addition of an miR-205 inhibitor was able to restore the observed effects. In conclusion, these findings demonstrate that miR-205 may have potential value as a novel therapeutic agent in the treatment of MLL-AF4 ALL. PMID:24009426

  7. Structure and biological activities of eumenine mastoparan-AF (EMP-AF), a new mast cell degranulating peptide in the venom of the solitary wasp (Anterhynchium flavomarginatum micado).

    PubMed

    Konno, K; Hisada, M; Naoki, H; Itagaki, Y; Kawai, N; Miwa, A; Yasuhara, T; Morimoto, Y; Nakata, Y

    2000-11-01

    A new mast cell degranulating peptide, eumenine mastoparan-AF (EMP-AF), was isolated from the venom of the solitary wasp Anterhynchium flavomarginatum micado, the most common eumenine wasp found in Japan. The structure was analyzed by FAB-MS/MS together with Edman degradation, which was corroborated by solid-phase synthesis. The sequence of EMP-AF, Ile-Asn-Leu-Leu-Lys-Ile-Ala-Lys-Gly-Ile-Ile-Lys-Ser-Leu-NH(2), was similar to that of mastoparan, a mast cell degranulating peptide from a hornet venom; tetradecapeptide with C-terminus amidated and rich in hydrophobic and basic amino acids. In fact, EMP-AF exhibited similar activity to mastoparan in stimulating degranulation from rat peritoneal mast cells and RBL-2H3 cells. It also showed significant hemolytic activity in human erythrocytes. Therefore, this is the first example that a mast cell degranulating peptide is found in the solitary wasp venom. Besides the degranulation and hemolytic activity, EMP-AF also affects on neuromuscular transmission in the lobster walking leg preparation. Three analogs EMP-AF-1 approximately 3 were snythesized and biologically tested together with EMP-AF, resulting in the importance of the C-terminal amide structure for biological activities.

  8. NMR study of the AF-SC-SC-AF phased transition in a pnictide superconductor LaFeAsO1-xHx

    NASA Astrophysics Data System (ADS)

    Fujiwara, Naoki; Sakurai, Ryosuke; Iimura, Soushi; Matsuishi, Satoru; Hosono, Hideo; Yamakawa, Youichi; Kontani, Hiroshi

    2014-03-01

    We have performed 75As and 1H NMR measurements in LaFeAsO1xHx, an isomorphic compound of LaFeAsO1xFx. LaFeAsO1xHx is an electron doped system, and O2- can be replaced with H- up to x = 0.5. LaFeAsO1xHx is known for having double superconducting (SC) domes on H doping. Recently, we discovered that a new antiferromagnetic (AF) phase follows the double SC domes on further H doping, forming a symmetric AF-SC-SC-AF phase alignment in the electronic phase diagram Unlike the AF ordering in the lightly H-doped regime, the AF ordering in the highly H-doped regime is attributed to the nesting between electron pockets. In the conference, we will show the data of both NMR spectra and the relaxation rate 1/T1 in the whole doping region. We will discuss the difference of electronic states between the lightly H-doped AF-SC phases and highly H-doped SC-AF phases. This work is supported by a Grant-in-Aid (Grant No. KAKENHI 23340101) from the Ministry of Education, Science, and Culture, Japan.

  9. INDEPENDENT CONFIRMATORY SURVEY REPORT FOR THE REACTOR BUILDING, HOT LABORATORY, PRIMARY PUMP HOUSE, AND LAND AREAS AT THE PLUM BROOK REACTOR FACILITY, SANDUSKY, OHIO

    SciTech Connect

    Erika N. Bailey

    2011-10-10

    In 1941, the War Department acquired approximately 9,000 acres of land near Sandusky, Ohio and constructed a munitions plant. The Plum Brook Ordnance Works Plant produced munitions, such as TNT, until the end of World War II. Following the war, the land remained idle until the National Advisory Committee for Aeronautics later called the National Aeronautics and Space Administration (NASA) obtained 500 acres to construct a nuclear research reactor designed to study the effects of radiation on materials used in space flight. The research reactor was put into operation in 1961 and was the first of fifteen test facilities eventually built by NASA at the Plum Brook Station. By 1963, NASA had acquired the remaining land at Plum Brook for these additional test facilities

  10. Identification and characterization of the afsR homologue regulatory gene from Streptomyces peucetius ATCC 27952.

    PubMed

    Parajuli, Niranjan; Viet, Hung Trinh; Ishida, Kenji; Tong, Hang Thi; Lee, Hei Chan; Liou, Kwangkyoung; Sohng, Jae Kyung

    2005-01-01

    We have isolated an afsR homologue, called afsR-p, through genome analysis of Streptomyces peucetius ATCC 27952. AfsR-p shares 60% sequence identity with AfsR from Streptomyces coelicolor A3 (2). afsR-p was expressed under the control of the ermE* promoter in its hosts S. peucetius, Streptomyces lividans TK 24, Streptomyces clavuligerus and Streptomyces griseus. We observed overproduction of doxorubicin (4-fold) in S. peucetius, gamma-actinorhodin (2.6-fold) in S. lividans, clavulanic acid (1.5-fold) in S. clavuligerus and streptomycin (slight) in S. griseus. Overproduction was due to expression of the gene in these strains as compared to the wild-type strains harboring the vector only. Comparative study of the expression of afsR-p revealed that regulatory networking in Streptomyces is not uniform. We speculate that phosphorylated AfsR-p becomes bound to the promoter region of afsS. The latter activates other regulatory genes, including pathway regulatory genes, and induces the production of secondary metabolites including antibiotics. We identified specific conserved amino acids and exploited them for the isolation of the partial sequence of the afsR homologue from S. clavuligerus and Streptomyces achromogens (rubradirin producer). Such findings provide additional evidence for the presence of a serine/threonine and tyrosine kinase-dependent global regulatory network in Streptomyces.

  11. Identification and characterization of the afsR homologue regulatory gene from Streptomyces peucetius ATCC 27952.

    PubMed

    Parajuli, Niranjan; Viet, Hung Trinh; Ishida, Kenji; Tong, Hang Thi; Lee, Hei Chan; Liou, Kwangkyoung; Sohng, Jae Kyung

    2005-01-01

    We have isolated an afsR homologue, called afsR-p, through genome analysis of Streptomyces peucetius ATCC 27952. AfsR-p shares 60% sequence identity with AfsR from Streptomyces coelicolor A3 (2). afsR-p was expressed under the control of the ermE* promoter in its hosts S. peucetius, Streptomyces lividans TK 24, Streptomyces clavuligerus and Streptomyces griseus. We observed overproduction of doxorubicin (4-fold) in S. peucetius, gamma-actinorhodin (2.6-fold) in S. lividans, clavulanic acid (1.5-fold) in S. clavuligerus and streptomycin (slight) in S. griseus. Overproduction was due to expression of the gene in these strains as compared to the wild-type strains harboring the vector only. Comparative study of the expression of afsR-p revealed that regulatory networking in Streptomyces is not uniform. We speculate that phosphorylated AfsR-p becomes bound to the promoter region of afsS. The latter activates other regulatory genes, including pathway regulatory genes, and induces the production of secondary metabolites including antibiotics. We identified specific conserved amino acids and exploited them for the isolation of the partial sequence of the afsR homologue from S. clavuligerus and Streptomyces achromogens (rubradirin producer). Such findings provide additional evidence for the presence of a serine/threonine and tyrosine kinase-dependent global regulatory network in Streptomyces. PMID:15921897

  12. AFS men and women differ most in their lifestyle choices

    USGS Publications Warehouse

    Connelly, N.A.; Brown, T.L.; Hardiman, J.M.

    2006-01-01

    The American Fisheries Society sponsored a survey to examine the career development choices of men and women and how they might differ by gender. A random sample of 700 men and 700 women was selected from the AFS membership database. The survey was mailed out in October 2004 and 991 questionnaires were returned for an adjusted response rate of 71%. Some differences exist between men and women in the areas of interest development, education, and employment, but the substantive differences occur in lifestyle choices. Women with a fisheries career are less likely to be married than men, even when age is controlled for, and women who are married are more likely to have dual-career considerations than their male counterparts. Among respondents without dependents in their home during their professional career, twice as many women as men think having children will adversely affect their career. For those with dependents, more than twice as many women as men said they had to put their career "on hold" because of their dependents. While AFS members do not represent all members of the fisheries profession, their experiences shed substantial light on the lifestyle choices likely faced by most members of the profession.

  13. Seasonal changes in immune parameters of rainbow trout (Oncorhynchus mykiss), brook trout (Salvelinus fontinalis) and brook trout × Arctic charr hybrids (Salvelinus fontinalis × Salvelinus alpinus alpinus).

    PubMed

    Papežíková, Ivana; Mareš, Jan; Vojtek, Libor; Hyršl, Pavel; Marková, Zdeňka; Šimková, Andrea; Bartoňková, Jana; Navrátil, Stanislav; Palíková, Miroslava

    2016-10-01

    Despite the high number of studies concerning seasonality of immune response in fish, information for some fish species is still scarce. Here, we assess seasonal changes in leukocyte counts and several immune parameters in three groups of farmed salmonids, i.e. brook trout (Salvelinus fontinalis), brook trout x Arctic charr hybrids (Salvelinus fontinalis x Salvelinus alpinus alpinus) and rainbow trout (Oncorhynchus mykiss) reared under the same conditions and fed with the same feed. Fish were sampled in five periods of the year (late April, early July, late August, early November and early February) and leukocyte counts, respiratory burst of blood phagocytes, lysozyme concentration in skin mucus and total complement activity were measured. Generalized linear models using fish body length as a continuous predictor and sampling period and fish species as categorical predictors, were significant for each of the parameters analysed. The highest seasonal variations in measured parameters were found in rainbow trout and lowest in hybrids. Our results confirm that measures of innate and adaptive immunity are strongly affected by season in all three groups of salmonids. The results will contribute to the improved assessment of immunocompetence in farmed fishes, essential for future sustainable development in aquaculture. PMID:27566100

  14. Seasonal changes in immune parameters of rainbow trout (Oncorhynchus mykiss), brook trout (Salvelinus fontinalis) and brook trout × Arctic charr hybrids (Salvelinus fontinalis × Salvelinus alpinus alpinus).

    PubMed

    Papežíková, Ivana; Mareš, Jan; Vojtek, Libor; Hyršl, Pavel; Marková, Zdeňka; Šimková, Andrea; Bartoňková, Jana; Navrátil, Stanislav; Palíková, Miroslava

    2016-10-01

    Despite the high number of studies concerning seasonality of immune response in fish, information for some fish species is still scarce. Here, we assess seasonal changes in leukocyte counts and several immune parameters in three groups of farmed salmonids, i.e. brook trout (Salvelinus fontinalis), brook trout x Arctic charr hybrids (Salvelinus fontinalis x Salvelinus alpinus alpinus) and rainbow trout (Oncorhynchus mykiss) reared under the same conditions and fed with the same feed. Fish were sampled in five periods of the year (late April, early July, late August, early November and early February) and leukocyte counts, respiratory burst of blood phagocytes, lysozyme concentration in skin mucus and total complement activity were measured. Generalized linear models using fish body length as a continuous predictor and sampling period and fish species as categorical predictors, were significant for each of the parameters analysed. The highest seasonal variations in measured parameters were found in rainbow trout and lowest in hybrids. Our results confirm that measures of innate and adaptive immunity are strongly affected by season in all three groups of salmonids. The results will contribute to the improved assessment of immunocompetence in farmed fishes, essential for future sustainable development in aquaculture.

  15. Mutual in vivo interactions between benzo[a]pyrene and tributyltin in brook trout (Salvelinus fontinalis)

    SciTech Connect

    Padros, J.; Pelletier, E.; Reader, S.; Denizeau, F.

    2000-04-01

    Tributyltin (TBT), an organometal used as an antifouling biocide, has been reported to inhibit cytochrome P450 (P450) 1A isozyme. Benzo[a]pyrene (BaP), a widespread carcinogenic polycyclic aromatic hydrocarbon, is both metabolized and bioactivated to carcinogenic BaP diol-epoxide (BPDE) metabolites primarily by hepatic P450 1A. Hence, TBT may inhibit the metabolism and bioactivation of BaP. This study was therefore designed to examine the potential in vivo interactions between BaP and TBT in a model fish. Male brook trout (Salelinus fontinalis) were given a single intraperitoneal injection of either BaP, TBT, or both in combination. After 48 h, blood, bile, and liver samples were collected and analyzed for a suite of biomarkers associated with P450 activity, BaP metabolism and bioactivation, and TBT metabolism. The results showed that TBT significantly inhibited (a) the induction of hepatic P450 1A-mediated ethoxyresorufin O-deethylase (EROD) and P450-mediated 3-cyano-7-ethoxycoumarin-O-deethylase (CN-ECOD) activities by BaP, (b) the formation of biliary BaP metabolites, and (c) the formation of (+)-anti-BPDE-plasma albumin adducts as measured by high-performance liquid chromatography-fluorescence. Notably, TBT alone did not inhibit EROD activity but induced CN-ECOD activity. Gas chromatography-mass spectrometry analysis indicated that the combined BaP + TBT dose resulted in higher levels of dibutyltin metabolites in the bite (p < 0.05). The present study supports the hypothesis that a single, high dose of TBT can antagonize the metabolism and bioactivation of BaP at least by inhibiting the induction of P4501A. On the other hand, BaP unexpectedly potentiated the metabolism of TBT, suggesting that hepatic isoforms other than P3501A may be responsible for TBT metabolism. Finally, this study supports the utility of a biomarker approach to screen potential xenobiotic interactions in aquatic organisms and to obtain mechanistic insights.

  16. Dynamics of nitrogen and dissolved organic carbon at the Hubbard brook experimental forest.

    PubMed

    Dittman, Jason A; Driscoll, Charles T; Groffman, Peter M; Fahey, Timothy J

    2007-05-01

    The factors controlling spatial and temporal patterns in soil solution and streamwater chemistry are highly uncertain in northern hardwood forest ecosystems in the northeastern United States, where concentrations of reactive nitrogen (Nr) in streams have surprisingly declined over recent decades in the face of persistent high rates of atmospheric Nr deposition and aging forests. Reactive nitrogen includes inorganic species (e.g., ammonium [NH4+], nitrate [NO3-]) and some organic forms (e.g., amino acids) available to support the growth of plants and microbes. The objective of this study was to examine controls on the spatial and temporal patterns in the concentrations and fluxes of nitrogen (N) species and dissolved organic carbon (DOC) in a 12-year record of soil solutions and streamwater along an elevational gradient (540-800 m) of a forested watershed at the Hubbard Brook Experimental Forest (HBEF) in the White Mountains of New Hampshire, USA. Dissolved organic N and DOC concentrations were elevated in the high-elevation spruce-fir-white birch (SFB) zone of the watershed, while NO3- was the dominant N species in the lower elevation hardwood portion of the watershed. Within the soil profile, N retention was centered in the mineral horizon, and significant amounts of N were retained between the lower mineral soil and the stream, supporting the idea that near- and in-stream processes are significant sinks for N at the HBEF. Temporal analysis suggested that hydrologic flow paths can override both abiotic and biotic retention mechanisms (i.e., during the non-growing season when most hydrologic export occurs, or during years with high rainfall), there appears to be direct flushing of N from the organic horizons into the stream via horizontal flow. Significant correlations between soil NO3- concentrations, nitrification rates and streamwater NO3- exports show the importance of biological production as a regulator of inorganic N export. The lack of internal production

  17. Analysis of the shallow groundwater flow system near Connetqout Brook, Long Island, New York

    USGS Publications Warehouse

    Prince, K.R.; Reilly, T.E.; Franke, O.L.

    1989-01-01

    Streamflow on Long Island is derived principally from shallow groundwater that flows above the deeper regional flow system. The movement of shallow groundwater was studied during 1975-1982 at Connetquot Brook - an undisturbed stream in Connetquot River State Park - in south-central Long Island. The investigation encompassed: (1) field studies of streamflow, groundwater levels, and age of water as indicated by tritium concentrations, and (2) numerical simulation of the shallow flow system to evaluate the hydraulic factors that influence groundwater flow near and beneath the stream. Analysis of water-level data indicates that groundwater flow is essentially horizontal throughout the drainage basin except near and beneath the stream, where it moves upward diagonally and discharges into the streambank at three sites were 1-2 ft higher than stream stage in the and in wells driven into the streambank at three sites were 1-2 ft higher than stream stage in the first 5 ft of penetration. Increases in head, which were detected to depths of 30 ft beneath the streambed, indicate upward movement of water above that depth. Water samples from selected wells were analyzed for tritium concentration to determine the relative age of water to locate the bottom boundary of the shallow flow system. Tritium concentrations indicate that the lower boundary is from 45 to 100 ft below the water table. A two-dimensional cross-sectional flow model of the shallow flow system indicated that: (1) stream width and streambed hydraulic conductivity influence heads mostly within about 50 ft of the stream; (2) the thickness of the shallow flow system influences heads more distant from the stream but has a negligible effect near the stream; and (3) the quantity of water entering the system as recharge from precipitation influences the heads throughout the area. Field measurements of hydraulic head indicate the shallow flow system to extend to about 30 ft below the stream channel. Results of the

  18. Mafic and ultramafic rocks of the northwestern Brooks Range of Alaska produce nearly symmetric gravity anomalies

    SciTech Connect

    Morin, R.L. )

    1993-04-01

    An arc of mafic and ultramafic rocks is mapped from Asik Mountain to Siniktanneyak Mountain in the northwestern Brooks Range of Alaska. Gravity data, although not very detailed, have been collected over the region and show some very conspicuous circular or oval gravity highs over portions of the mapped mafic-ultramafic bodies. Bodies which have large associated gravity anomalies are Asik Mountain (80 mGal), Avon Hills (20 mGal), Misheguk Mountain (30 mGal), and Siniktanneyak Mountain (20 mGal). Gabbros of the Siniktanneyak Mountain complex, where the gravity coverage is best, have densities of about 3.0 g/cm[sup 3] while the densities of the surrounding sedimentary rocks are about 2.6 g/cm[sup 3]. Volcanic rocks in the area have average densities of about 2.7 g/cm[sup 3]. Three-dimensional modeling indicates that the largest anomaly, on the southwestern part of the complex, could be caused by a polygonal prism of gabbro with vertical sides, about 6 km across and about 4.5 km deep. A smaller lobe of the anomaly on the northeast of the complex could be caused by another oblong polygonal prism about 4 km long and 2 km wide trending northeast and about 1.5 km deep. Modeling this anomaly with densities lower than gabbro would require greater thicknesses to produce the same anomaly. Modeling each anomaly along this arc in 2 1/2-dimensions shows many possible solutions using different body shapes and different density contrasts. There are several other gravity anomalies in this vicinity which could represent unexposed high density rocks. One such anomaly is in the Maiyumerak Mountains northeast of Asik Mountain (30 mGal). Another anomaly is to the northwest of Asik Mountain (20 mGal). There is also an anomaly at Uchugrak (20 mGal) east of Avan Hills. Although many of the anomalies in this region are poorly controlled, an attempt has been made to interpret the data to show possible solutions.

  19. Population response to habitat fragmentation in a stream-dwelling brook trout population

    USGS Publications Warehouse

    Letcher, B.H.; Nislow, K.H.; Coombs, J.A.; O'Donnell, M. J.; Dubreuil, T.L.

    2007-01-01

    Fragmentation can strongly influence population persistence and expression of life-history strategies in spatially-structured populations. In this study, we directly estimated size-specific dispersal, growth, and survival of stream-dwelling brook trout in a stream network with connected and naturally-isolated tributaries. We used multiple-generation, individual-based data to develop and parameterize a size-class and location-based population projection model, allowing us to test effects of fragmentation on population dynamics at local (i.e., subpopulation) and system-wide (i.e., metapopulation) scales, and to identify demographic rates which influence the persistence of isolated and fragmented populations. In the naturally-isolated tributary, persistence was associated with higher early juvenile survival (-45% greater), shorter generation time (one-half) and strong selection against large body size compared to the open system, resulting in a stage-distribution skewed towards younger, smaller fish. Simulating barriers to upstream migration into two currently-connected tribuory populations caused rapid (2-6 generations) local extinction. These local extinctions in turn increased the likelihood of system-wide extinction, as tributaries could no longer function as population sources. Extinction could be prevented in the open system if sufficient immigrants from downstream areas were available, but the influx of individuals necessary to counteract fragmentation effects was high (7-46% of the total population annually). In the absence of sufficient immigration, a demographic change (higher early survival characteristic of the isolated tributary) was also sufficient to rescue the population from fragmentation, suggesting that the observed differences in size distributions between the naturally-isolated and open system may reflect an evolutionary response to isolation. Combined with strong genetic divergence between the isolated tributary and open system, these results

  20. Response of Gammarus pulex and Baetis rhodani to springtime acid episodes in humic brooks.

    PubMed

    Andrén, C M; Eriksson Wiklund, A-K

    2013-10-01

    While chronic acidification of water bodies has been steadily decreasing, episodic acidification continues to affect stream biology by temporarily decreasing pH and mobilizing aluminum. These events are becoming more common as climate change renders more frequent and intense storms and flooding. Throughout Scandinavia, the effects of acidification have been mitigated by liming since the 1980s, but remediation efforts can now be reduced. While transient acidity may reduce fish populations, also other species in streams are affected. In this in-stream study, two macro-invertebrates (Gammarus pulex and Baetis rhodani), both known as salmonid prey organisms, were exposed to snowmelt in six humic brooks with a natural gradient of pH and inorganic monomeric Al (Al(i)). We hypothesize that acid toxicity thresholds can be defined using lethal (mortality) and sublethal (changes in body elemental content) metrics. Periodic observations were made of mortality and whole body concentrations of base cations (BC: Ca, Mg, Na and K) and metals (Al, Fe, Zn and Mn). Mortality increased dramatically at pH<6.0 and Al(i)>15 μg/L for G. pulex and at pH<5.7 and Al(i)>20 μg/L for B. rhodani. No accumulation of Al was found. The invertebrate body Na concentration decreased when pH dropped, suggesting that osmoregulation in both species was affected. In contrast to general BC pattern, Ca concentration in G. pulex and Mg concentration in B. rhodani increased when pH decreased. Although Al(i) strongly correlates to pH, the Al composition of soil and bedrock also influences Al availability, potentially contributing to toxic Al(i) episodes. The estimated values calculated in this study can be used to improve water quality criteria and as thresholds to adjust doses of lime compared to old recommendations in ongoing liming programs. Such adjustments may be critical since both Al(i) and pH levels have to be balanced to mitigate damage to recovering stream ecosystems.

  1. A late Wisconsin and Holocene vegetation history from the central brooks range: Implications for Alaskan palaeoecology

    NASA Astrophysics Data System (ADS)

    Brubaker, Linda B.; Garfinkee, Harriet L.; Edwards, Mary E.

    1983-09-01

    Five pollen diagrams reveal late Wisconsin and Holocene vegetation changes in the Walker Lake/Alatna Valley region of the central Brooks Range, approximately 100 km west of the area studied by D. A. Livingstone (1955, Ecology36, 587-600). New insights into the vegetation history of this region are provided by calculations of pollen influx and by the use of linear discriminant analysis to separate Picea glauca and P. mariana pollen. Three major pollen zones are identified: (1) a basal herb zone, characterized by high percentages of Cyperaceae, Gramineae, Salix, and Artemisia, and low total pollen influx; (2) a shrub Betula zone with increased total pollen influx and very high percentages of Betula pollen, predominantly in the size range of B. nana and B. glandulosa; and (3) and Alnus zone dominated by Alnus pollen. Lakes currently within the boreal forest or near tree line show relatively high percentages of Picea pollen in the Alnus zone. Several striking vegetation changes occurred between ca. 10,000 and 7000 yr B.P. Between ca. 11,000 and 10,000 yr B.P., Populus balsamifera pollen percentages as great as 30% indicate that this species was present at low-elevation sites near Walker Lake. These populations declined abruptly ca. 10,000 yr ago and have never regained prominence. About 8500 yr B.P., Picea glauca pollen reached 10-15%, indicating the arrival of P. glauca in or near the study area. P. glauca populations evidently decreased ca. 8000 yr ago, when Picea pollen percentages and influx fell to low values. About 7000 yr B.P., Alnus pollen percentages and influx rose sharply as alder shrubs became established widely. Picea once more expanded ca. 5000 yr ago, but these populations were dominated by P. mariana rather than P. glauca, which increased slowly at this time and may still be advancing northward. Some vegetation changes have been remarkably synchronous over wide areas of interior Alaska, and probably reflect responses of in situ vegetation to

  2. A 2000 year varve-based climate record from the central Brooks Range, Alaska

    SciTech Connect

    Bird, BW; Abbott, MB; Finney, BP; Kutchko, B

    2009-01-01

    Varved minerogenic sediments from glacial-fed Blue Lake, northern Alaska, are used to investigate late Holocene climate variability. Varve-thickness measurements track summer temperature recorded at Atigun Pass, located 41 km east at a similar elevation (r (2) = 0.31, P = 0.08). Results indicate that climate in the Brooks Range from 10 to 730 AD (varve year) was warm with precipitation inferred to be higher than during the twentieth century. The varvetemperature relationship for this period was likely compromised and not used in our temperature reconstruction because the glacier was greatly reduced, or absent, exposing sub-glacial sediments to erosion from enhanced precipitation. Varve-inferred summer temperatures and precipitation decreased after 730 AD, averaging 0.4A degrees C above the last millennial average (LMA = 4.2A degrees C) from 730 to 850 AD, and 0.1A degrees C above the LMA from 850 to 980 AD. Cooling culminated between 980 and 1030 AD with temperatures 0.7A degrees C below the LMA. Varve-inferred summer temperatures increased between 1030 and 1620 AD to the LMA, though the period between 1260 and 1350 AD was 0.2A degrees C below the LMA. Although there is no equivalent to the European Medieval Warm Period in the Blue Lake record, two warm intervals occurred from 1350 to 1450 AD and 1500 to 1620 AD (0.4 and 0.3A degrees C above the LMA, respectively). During the Little Ice Age (LIA; 1620 to 1880 AD), inferred summer temperature averaged 0.2A degrees C below the LMA. After 1880 AD, inferred summer temperature increased to 0.8A degrees C above the LMA, glaciers retreated, but aridity persisted based on a number of regional paleoclimate records. Despite warming and glacial retreat, varve thicknesses have not achieved pre-730 AD levels. This reflects limited sediment availability and transport due to a less extensive retreat compared to the first millennium, and continued relative aridity. Overall, the Blue Lake record is similar to varve records from the

  3. Air Abrasion

    MedlinePlus

    ... delivered directly to your desktop! more... What Is Air Abrasion? Article Chapters What Is Air Abrasion? What Happens? The Pros and Cons Will I Feel Anything? Is Air Abrasion for Everyone? print full article print this ...

  4. Comparison of CO2 trapping in highly heterogeneous reservoirs with Brooks-Corey and van Genuchten type capillary pressure curves

    NASA Astrophysics Data System (ADS)

    Gershenzon, Naum I.; Ritzi, Robert W., Jr.; Dominic, David F.; Mehnert, Edward; Okwen, Roland T.

    2016-10-01

    Geological heterogeneities affect the dynamics of carbon dioxide (CO2) plumes in subsurface environments in important ways. Previously, we showed how the dynamics of CO2 plumes are influenced by the multiscaled sedimentary architecture in deep brine fluvial-type reservoirs. The results confirm that representing small-scale features and the corresponding heterogeneity in saturation functions, along with hysteresis in saturation functions, are all critical to understanding capillary trapping processes. Here, we show that when heterogeneity and hysteresis are represented, the two conventional approaches for defining saturation functions, Brooks-Corey and van Genuchten, represent fundamentally different physical systems. The Brooks-Corey approach represents heterogeneity in entry pressures, and leads to trapping by capillary pinning. The van Genuchten approach represents a network of pores transporting the nonwetting fluid, across rock types, with negligible capillary entry pressure, and leads to capillary retardation. These differences significantly affect the large-scale characteristics of CO2 plumes (i.e., their mass, shape, and position).

  5. K-Ar geochronology of the Survey Pass, Ambler River and Eastern Baird Mountains quadrangles, southwestern Brooks Range, Alaska

    USGS Publications Warehouse

    Turner, Donald L.; Forbes, R.B.; Mayfield, C.F.

    1978-01-01

    We report 76 previously unpublished K-Ar mineral ages from 47 metamorphic and igneous rocks in the southwestern Brooks Range. The pattern of radiometric ages is complex, reflecting the complex geologic history of this area. Local and regional radiometric evidence suggests that the southern Brooks Range schist belt has, at least in part, undergone a late Precambrian metamorphism and that the parent sedimentary and igneous rocks for the metamorphic rocks dated as late Precambrian are at least this old (Precambrian Z). This schist terrane experienced a major thermal event in mid-Cretaceous time, causing widespread resetting of nearly all K-Ar mica ages. A series of apparent ages intermediate between late Precambrian and mid-Cretaceous are interpreted as indicating varying amounts of partial argon loss from older rocks during the Cretaceous event. The schist belt is characterized by dominant metasediments and subordinate metabasites and metafelsites. Blueschists occur within the schist belt from the Chandalar quadrangle westward to the Baird Mountains quadrangle, but geologic evidence does not support the existence of a fossil subduction zone.

  6. HUWE1 mutations in Juberg-Marsidi and Brooks syndromes: the results of an X-chromosome exome sequencing study

    PubMed Central

    Friez, Michael J; Brooks, Susan Sklower; Stevenson, Roger E; Field, Michael; Basehore, Monica J; Adès, Lesley C; Sebold, Courtney; McGee, Stephen; Saxon, Samantha; Skinner, Cindy; Craig, Maria E; Murray, Lucy; Simensen, Richard J; Yap, Ying Yzu; Shaw, Marie A; Gardner, Alison; Corbett, Mark; Kumar, Raman; Bosshard, Matthias; van Loon, Barbara; Tarpey, Patrick S; Abidi, Fatima; Gecz, Jozef; Schwartz, Charles E

    2016-01-01

    Background X linked intellectual disability (XLID) syndromes account for a substantial number of males with ID. Much progress has been made in identifying the genetic cause in many of the syndromes described 20–40 years ago. Next generation sequencing (NGS) has contributed to the rapid discovery of XLID genes and identifying novel mutations in known XLID genes for many of these syndromes. Methods 2 NGS approaches were employed to identify mutations in X linked genes in families with XLID disorders. 1 involved exome sequencing of genes on the X chromosome using the Agilent SureSelect Human X Chromosome Kit. The second approach was to conduct targeted NGS sequencing of 90 known XLID genes. Results We identified the same mutation, a c.12928 G>C transversion in the HUWE1 gene, which gives rise to a p.G4310R missense mutation in 2 XLID disorders: Juberg-Marsidi syndrome (JMS) and Brooks syndrome. Although the original families with these disorders were considered separate entities, they indeed overlap clinically. A third family was also found to have a novel HUWE1 mutation. Conclusions As we identified a HUWE1 mutation in an affected male from the original family reported by Juberg and Marsidi, it is evident the syndrome does not result from a mutation in ATRX as reported in the literature. Additionally, our data indicate that JMS and Brooks syndromes are allelic having the same HUWE1 mutation. PMID:27130160

  7. Selection and preference of benthic habitat by small and large Ammocoetes of the Least Brook Lamprey (Lampetra aepyptera)

    USGS Publications Warehouse

    Smith, Dustin M.; Welsh, Stuart; Turk, Philip J.

    2011-01-01

    In this laboratory study, we quantified substrate selection by small (<50 mm) and large (100–150 mm) ammocoetes of the least brook lamprey (Lampetra aepyptera). In aquaria, ammocoetes were given a choice to burrow into six equally-available substrate types: small gravel (2.360–4.750 mm), coarse sand (0.500–1.400 mm), fine sand (0.125–0.500 mm), organic substrate (approximately 70% decomposing leaves/stems and organic sediment particles, and 30% silt and fine sand), an even mixture of silt, clay, and fine sand, and silt/clay (<0.063 mm). Fine sand was selected with a significantly higher probability than any other substrate. Fine sand habitat is limited in many streams, in part owing to geology, but also as a result of channelization and excessive silt/clay sedimentation, which is a conservation concern. Our results indicate that ammocoetes of least brook lampreys are habitat specialists that prefer fine sand habitat. Hence, availability of fine sand habitat may limit distributions and population sizes.

  8. Selection and preference of benthic habitat by small and large ammocoetes of the least brook lamprey (Lampetra aepyptera)

    USGS Publications Warehouse

    Smith, D.M.; Welsh, S.A.; Turk, P.J.

    2011-01-01

    In this laboratory study, we quantified substrate selection by small (<50 mm) and large (100-150 mm) ammocoetes of the least brook lamprey (Lampetra aepyptera). In aquaria, ammocoetes were given a choice to burrow into six equally-available substrate types: small gravel (2.360-4.750 mm), coarse sand (0.500-1.400 mm), fine sand (0.125-0.500 mm), organic substrate (approximately 70% decomposing leaves/stems and organic sediment particles, and 30% silt and fine sand), an even mixture of silt, clay, and fine sand, and silt/clay (<0.063 mm). Fine sand was selected with a significantly higher probability than any other substrate. Fine sand habitat is limited in many streams, in part owing to geology, but also as a result of channelization and excessive silt/clay sedimentation, which is a conservation concern. Our results indicate that ammocoetes of least brook lampreys are habitat specialists that prefer fine sand habitat. Hence, availability of fine sand habitat may limit distributions and population sizes. ?? 2011 Springer Science+Business Media B.V.

  9. Allan Brooks, naturalist and artist (1869-1946): the travails of an early twentieth century wildlife illustrator in North America.

    PubMed

    Winearls, Joan

    2008-01-01

    British by birth Allan Cyril Brooks (1869-1946) emigrated to Canada in the 1880s, and became one of the most important North American bird illustrators during the first half of the twentieth century. Brooks was one of the leading ornithologists and wildlife collectors of the time; he corresponded extensively with other ornithologists and supplied specimens to many major North American museums. From the 1890s on he hoped to support himself by painting birds and mammals, but this was not possible in Canada at that time and he was forced to turn to American sources for illustration commissions. His work can be compared with that of his contemporary, the leading American bird painter Louis Agassiz Fuertes (1874-1927), and there are striking similarities and differences in their careers. This paper discusses the work of a talented, self-taught wildlife artist working in a North American milieu, his difficulties and successes in a newly developing field, and his quest for Canadian recognition.

  10. Pressure-temperature history of the Brooks Range and Seward Peninsula, Alaska HP-LT units and geodynamic implications

    NASA Astrophysics Data System (ADS)

    Lemonnier, N.; Labrousse, L.; Agard, P.; Till, A. B.

    2013-12-01

    Metamorphic rocks in the inner zones of mountain belts constitute a marker of vertical movements within orogenic wedges, themselves controled by balance between boundary conditions and volume forces. They provide key evidence for paleogeographic and tectonic reconstruction of convergence zones. In the Arctic, the Amerasian basin opened in cretaceous time and evolved in the upper plate of the Pacific subduction system. The tectonic evolution of the Brooks Range, northern Alaska, is a key issue for understanding possible coupling between these two dynamics. HP-LT metamorphic rocks, now exposed in the Schist belt, Brooks Range, and the Nome Complex, Seward Peninsula, were brought to the surface during Early Cretaceous to Paleocene time. The processes responsible for their exhumation (syn-collisional nappe-stacking or post-collisional extensional detachment) are still a matter of debate, and have direct implications in terms of orogenic boundary conditions and coupling between subduction processes (to the south) and basin response (to the north; the North Slope). Systematic thermometry via Raman Spectrometry (RSCM) on carbonaceous material from regional transects in the Schist Belt and the Seward Peninsula as well as pseudosections calculations allow the determination of units with contrasting pressure-temperature histories and a comparison of thermal evolution of the two areas. Geodynamic implications of their exhumation is then discussed.

  11. Thermal structure of the Brooks Ranges and Seward Peninsula, Alaska HP-LT units : insights from RSCM thermometry

    NASA Astrophysics Data System (ADS)

    nicolas, Lemonnier; loic, Labrousse; philippe, Agard; Buschendorf Maelianna, Bigot; Frédéric, Mouthereau; Alison, Till

    2013-04-01

    Inner parts of mountain belts expose metamorphic rocks that record the thermal evolution of orogenic wedges, from burial to final exhumation. As such, they provide key constraints for paleogeographic and tectonic reconstructions of convergent zones. In order to understand the relationships between the Pacific subduction system and the Arctic geodynamics, we herein reappraise the key tectonic evolution of the Brooks Ranges (Northern Alaska). High-pressure low-temperature metamorphic rocks cropping out in the Schist belt of the Brooks Ranges, and the Nome Complex schists (Seward Peninsula), were exposed during Early Cretaceous to Paleocene times. Processes and structures responsible for their exhumation (i.e., syn-collisional nappe-stacking or post-collisional extensional detachment), which are still a matter of debate, have direct implications in terms of orogenic boundary conditions and mechanical coupling between subduction processes in southern Alaska and basin response to the north (North Slope). In this study systematic thermometry via Raman Spectrometry (RSCM) of Carbonaceous material along two regional transects in the Schist Belt and Seward Penisula (Nome area) allows the identification of units with contrasting thermal histories and a comparison of the thermal evolutions of the two areas. Geodynamic implications are finally discussed.

  12. Results of the radiological survey at Interstate 80, North Right of Way at Lodi Brook, Lodi, New Jersey (LJ077)

    SciTech Connect

    Foley, R.D.; Floyd, L.M.

    1989-06-01

    Maywood Chemical Works (MCW) of Maywood, New Jersey, generated process wastes and residues associated with the production and refining of thorium and thorium compounds from monazite ores from 1916 to 1956. MCW supplied rare earth metals and thorium compounds to the Atomic Energy Commission and various other government agencies from the late 1940s to the mid-1950s. Area residents used the sandlike waste from this thorium extraction process mixed with tea and cocoa leaves as mulch in their yards. Some of these contaminated wastes were also eroded from the site into Lodi Brook. At the request of the US Department of Energy (DOE), a group from Oak Ridge National Laboratory conducts investigative radiological surveys of properties in the vicinity of MCW to determine whether a property is contaminated with radioactive residues, principally /sup 232/Th, derived from the MCW site. The survey typically includes direct measurement of gamma radiation levels and oil sampling for radionuclide analyses. The survey of this site, on the North Right of Way of Interstate 80 at Lodi Brook, Lodi, New Jersey (LJ077), was conducted during 1988. Results of the survey demonstrated radionuclide concentrations in excess of the DOE Formerly Utilized Sites Remedial Action Program criteria. The radionuclide distributions are typical of the type of material originating from the MCW site. 5 refs., 3 figs., 3 tabs.

  13. K-Ar ages of allochthonous mafic and ultramafic complexes and their metamorphic aureoles, Western Brooks Range, Alaska

    SciTech Connect

    Boak, J.L.; Turner, D.L.; Wallace, W.K.; Moore, T.E.

    1985-04-01

    New K-Ar ages from allochthonous mafic and ultramafic complexes of the western Brooks Range (Brooks Range ophiolite) show that igneous rocks yielded ages nearly identical to those of underlying metamorphic aureole rocks. Dated rocks of the Misheguk igneous sequence from Tumit Creek consist of (1) hornblende gabbro with minor greenschist and lower grade alteration, hornblende age 147.2 +/- 4.4 Ma; and (2) hornblende-bearing diorite, also slightly altered, age 155.8 +/- 4.7 Ma. Both samples come from presumed higher levels of the Misheguk sequence. Dated samples of metamorphic aureole rocks come from outcrops near Kismilot Creek and lie structurally beneath the Iyikrok Mountain peridotite body. The rocks consist of amphibolite and garnet-bearing biotite-hornblende gneiss considered to be metamorphosed Copter igneous sequence and related sedimentary rocks. Hornblende ages are 154.2 +/- 4.6 Ma and 153.2 +/- 4.6 Ma. metamorphism is clearly related to the structurally overlying perioditite, as the degree of alteration decreases downward. The authors suggest that the K-Ar ages of these rocks represent the effects of thermal metamorphism post-dating igneous crystallization, and are related to tectonic emplacement of the complex. Earlier K-Ar data on igneous rocks give similar ages and have been interpreted as reflecting tectonothermal events. The age of igneous crystallization of the mafic and ultramafic rocks of the Misheguk igneous sequence remains uncertain.

  14. Breaking the speed limit--comparative sprinting performance of brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta)

    USGS Publications Warehouse

    Castro-Santos, Theodore; Sanz-Ronda, Francisco Javier; Ruiz-Legazpi, Jorge

    2013-01-01

    Sprinting behavior of free-ranging fish has long been thought to exceed that of captive fish. Here we present data from wild-caught brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta), volitionally entering and sprinting against high-velocity flows in an open-channel flume. Performance of the two species was nearly identical, with the species attaining absolute speeds > 25 body lengths·s−1. These speeds far exceed previously published observations for any salmonid species and contribute to the mounting evidence that commonly accepted estimates of swimming performance are low. Brook trout demonstrated two distinct modes in the relationship between swim speed and fatigue time, similar to the shift from prolonged to sprint mode described by other authors, but in this case occurring at speeds > 19 body lengths·s−1. This is the first demonstration of multiple modes of sprint swimming at such high swim speeds. Neither species optimized for distance maximization, however, indicating that physiological limits alone are poor predictors of swimming performance. By combining distributions of volitional swim speeds with endurance, we were able to account for >80% of the variation in distance traversed by both species.

  15. High temperature dielectric properties of Apical, Kapton, Peek, Teflon AF, and Upilex polymers

    NASA Technical Reports Server (NTRS)

    Hammoud, A. N.; Baumann, E. D.; Overton, E.; Myers, I. T.; Suthar, J. L.; Khachen, W.; Laghari, J. R.

    1992-01-01

    Reliable lightweight systems capable of providing electrical power at the magawatt level are a requirement for future manned space exploration missions. This can be achieved by the development of high temperature insulating materials which are not only capable of surviving the hostile space environment but can contribute to reducing the mass and weight of the heat rejection system. In this work, Apical, Upilex, Kapton, Teflon AF, and Peek polymers are characterized for AC and DC dielectric breakdown in air and in silicone oil at temperatures up to 250 C. The materials are also tested in terms of their dielectric constant and dissipation factor at high temperatures with an electrical stress of 60 Hz, 200 V/mil present. The effects of thermal aging on the properties of the films are determined after 15 hours of exposure to 200 and 250 C, each. The results obtained are discussed and conclusions are made concerning the suitability of these dielectrics for use in capacitors and cable insulations in high temperature environments.

  16. Installation-restoration program. Records search, Newark AFS, Ohio

    SciTech Connect

    Not Available

    1985-04-01

    Since 1962, many hazardous and potentially hazardous wastes have been generated by industrial operations in Building 4 at Newark AFS. Dirty freon is recycled through a recovery still inside the building and reused. A beryllium dust collection system is located on the east side of Building 4. The collected dust is encapsulated in cement and sent off-station for disposal. Twelve hazardous materials storage or staging areas were identified. During interviews, it was determined that large quantities of dirty freon had been dumped along the entire perimeter fence line and in particular two specific locations. An additional spill site was located in the area at the north-east corner of Building 4 near the location of the virgin freon tanks. An unknown amount of spent battery acid and spent solvents were spilled in this area between 1962 and 1964.

  17. [HG-AFS determination of selenium in Moringa oleifera].

    PubMed

    Huang, Guo-qing; Xiao, Zi-jun

    2007-02-01

    The Se content in Moringa oleifera was studied by hydride generation atom fluorescence spectrometry (HG-AFS) with wet digestion. The effects of the way of digestion, the work condition of apparatus, the reaction medium and acidity, and the reducing agent and masking agent on the determination of Se were investigated. And the operating condition of apparatus was optimized. The results showed that the detection limit of Se in this method was 0.42 ng x mL(-1) in the linear ranger of 0-120 ng x mL(-1), the relative standard deviation was 3.53% (n = 11), and the recovery of the method was 95.2%-104.6%. It was showed that the method was very sensitive, simple, rapid and accurate.

  18. Optimised secure transmission through untrusted AF relays using link adaptation

    NASA Astrophysics Data System (ADS)

    Taki, Mehrdad; Sadeghi, Mohammad

    2016-05-01

    A new transmission scheme is presented for a two-hop relay network including two AF relays, considering physical layer security where relays are not able to detect signal with an acceptable bit error rate (BER) but the combined received signal is detected with an acceptable BER at the final receiver. It is assumed that there is no direct path between the transmitter and the receiver (relay network without diversity). Adaptive modulation and coding is utilised at the transmitter and transmission powers of the transmitter and of the relays are continuously adapted provisioning individual average power constraint for each node. Numerical evaluations show that an acceptable performance degradation is seen by the proposed secure relaying scheme compared to the optimum relay selection scheme without security constraint.

  19. Evaluation of the atoxigenic Aspergillus flavus strain AF36 in pistachio orchards

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The atoxigenic strain Aspergillus flavus AF36, which has been extensively used as a biocontrol agent in commercial corn and cotton fields to reduce aflatoxin contamination, was applied in research pistachio orchards from 2002 to 2005 and in commercial pistachio orchards from 2008 to 2011. AF36 was a...

  20. 32 CFR 989.12 - AF Form 813, Request for Environmental Impact Analysis.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... the issues to potential environmental impacts. AF Form 813 must be retained with the EA or EIS to record the focusing of environmental issues. ... 32 National Defense 6 2014-07-01 2014-07-01 false AF Form 813, Request for Environmental...

  1. 32 CFR 989.12 - AF Form 813, Request for Environmental Impact Analysis.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... the issues to potential environmental impacts. AF Form 813 must be retained with the EA or EIS to record the focusing of environmental issues. ... 32 National Defense 6 2013-07-01 2013-07-01 false AF Form 813, Request for Environmental...

  2. 32 CFR 989.12 - AF Form 813, Request for Environmental Impact Analysis.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... the issues to potential environmental impacts. AF Form 813 must be retained with the EA or EIS to record the focusing of environmental issues. ... 32 National Defense 6 2010-07-01 2010-07-01 false AF Form 813, Request for Environmental...

  3. 32 CFR 989.12 - AF Form 813, Request for Environmental Impact Analysis.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... the issues to potential environmental impacts. AF Form 813 must be retained with the EA or EIS to record the focusing of environmental issues. ... 32 National Defense 6 2012-07-01 2012-07-01 false AF Form 813, Request for Environmental...

  4. 32 CFR 989.12 - AF Form 813, Request for Environmental Impact Analysis.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... the issues to potential environmental impacts. AF Form 813 must be retained with the EA or EIS to record the focusing of environmental issues. ... 32 National Defense 6 2011-07-01 2011-07-01 false AF Form 813, Request for Environmental...

  5. AF Therapy Now and in the Future: Drugs, Biologicals, and Ablation

    PubMed Central

    Woods, Christopher E.; Olgin, Jeffrey

    2014-01-01

    Rationale Atrial fibrillation (AF) is a complex disease with multiple interrelating causes culminating in rapid, seemingly disorganized atrial activation. Therapy targeting AF is rapidly changing and improving. Objective The purpose of this review is to summarize current state-of-the-art diagnostic and therapeutic modalities for treatment of atrial fibrillation. The review focuses on reviewing treatment as it relates to the pathophysiological basis of disease and reviews pre-clinical and clinical evidence for potential new diagnostic and therapeutic modalities, including imaging, biomarkers, pharmacologic therapy as well as ablative strategies for AF. Conclusions Current ablation and drug therapy approaches to treating AF are largely based on treating the arrhythmia once the substrate occurs and is more effective in paroxysmal AF rather than persistent or permanent AF. However, there is much research aimed at prevention strategies, targeting AF substrate—so called upstream therapy. Improved diagnostics, using imaging, genetics and biomarkers are needed to better identify sub-types of AF based on underlying substrate/mechanism to allow more directed therapeutic approaches. In addition, novel anti-arrhythmics with more atrial specific effects may reduce limiting pro-arrhythmic side-effects. Advances in ablation therapy are aimed at improving technology to reduce procedure time and in mechanism targeted approaches. PMID:24763469

  6. Disrupted interaction between CFTR and AF-6/afadin aggravates malignant phenotypes of colon cancer.

    PubMed

    Sun, Ting Ting; Wang, Yan; Cheng, Hong; Xiao, Hu Zhang; Xiang, Juan Juan; Zhang, Jie Ting; Yu, Siu Bun Sydney; Martin, Tracey Amanda; Ye, Lin; Tsang, Lai Ling; Jiang, Wen Guo; Xiaohua, Jiang; Chan, Hsiao Chang

    2014-03-01

    How mutations or dysfunction of CFTR may increase the risk of malignancies in various tissues remains an open question. Here we report the interaction between CFTR and an adherens junction molecule, AF-6/afadin, and its involvement in the development of colon cancer. We have found that CFTR and AF-6/afadin are co-localized at the cell-cell contacts and physically interact with each other in colon cancer cell lines. Knockdown of CFTR results in reduced epithelial tightness and enhanced malignancies, with increased degradation and reduced stability of AF-6/afadin protein. The enhanced invasive phenotype of CFTR-knockdown cells can be completely reversed by either AF-6/afadin over-expression or ERK inhibitor, indicating the involvement of AF-6/MAPK pathway. More interestingly, the expression levels of CFTR and AF-6/afadin are significantly downregulated in human colon cancer tissues and lower expression of CFTR and/or AF-6/afadin is correlated with poor prognosis of colon cancer patients. The present study has revealed a previously unrecognized interaction between CFTR and AF-6/afadin that is involved in the pathogenesis of colon cancer and indicated the potential of the two as novel markers of metastasis and prognostic predictors for human colon cancer.

  7. Mutant U2AF1 Expression Alters Hematopoiesis and Pre-mRNA Splicing In Vivo

    PubMed Central

    Shirai, Cara Lunn; Ley, James N.; White, Brian S.; Kim, Sanghyun; Tibbitts, Justin; Shao, Jin; Ndonwi, Matthew; Wadugu, Brian; Duncavage, Eric J.; Okeyo-Owuor, Theresa; Liu, Tuoen; Griffith, Malachi; McGrath, Sean; Magrini, Vincent; Fulton, Robert S.; Fronick, Catrina; O’Laughlin, Michelle; Graubert, Timothy A.; Walter, Matthew J.

    2015-01-01

    SUMMARY Heterozygous somatic mutations in the spliceosome gene U2AF1 occur in ~11% of patients with myelodysplastic syndromes (MDS), the most common adult myeloid malignancy. It is unclear how these mutations contribute to disease. We examined in vivo hematopoietic consequences of the most common U2AF1 mutation using a doxycycline-inducible transgenic mouse model. Mice expressing mutant U2AF1(S34F) display altered hematopoiesis and changes in pre-mRNA splicing in hematopoietic progenitor cells by whole transcriptome analysis (RNA-seq). Integration with human RNA-seq datasets determined that common mutant U2AF1-induced splicing alterations are enriched in RNA processing genes, ribosomal genes, and recurrently-mutated MDS and acute myeloid leukemia-associated genes. These findings support the hypothesis that mutant U2AF1 alters downstream gene isoform expression, thereby contributing to abnormal hematopoiesis in MDS patients. PMID:25965570

  8. State University of New York, University of Stoney Brook, University and Clinical Practice Management Plan Space Leasing Practices. Report 96-S-36.

    ERIC Educational Resources Information Center

    New York State Office of the Comptroller, Albany. Div. of Management Audit.

    This audit report assesses the propriety and economy of space leasing practices of the State University of New York at Stony Brook (SUNY-SB) for the period July 1, 1994 through December 31, 1996, specifically those related to a health center that includes five professional schools, a 536-bed teaching hospital, and a 350-bed veterans' home. Some of…

  9. Factors affecting competitive dominance of rainbow trout over brook trout in southern Appalachian streams: Implications of an individual-based model

    SciTech Connect

    Clark, M.E.; Rose, K.A.

    1997-01-01

    We used an individual-based model to examine possible explanations for the dominance of rainbow trout Oncorhynchus mykiss over brook trout Salvelinus fontinalis in southern Appalachian streams. Model simulations were used to quantify the effects on interspecific competition of (1) competitive advantage for feeding sites by rainbow trout, (2) latitudinal differences in stream temperatures, flows, and daylight, (3) year-class failures, (4) lower fecundity of brook trout, and (5) reductions in spawning habitat. The model tracks the daily spawning, growth, and survival of individuals of both species throughout their lifetime in a series of connected stream habitat units (pools, runs, or riffles). Average densities of each species based on 100-year simulations were compared for several levels of each of the five factors and for sympatric and allopatric conditions. Based on model results and empirical information, we conclude that more frequent year-class failures and the lower fecundity of brook trout are both possible and likely explanations for rainbow trout dominance, that warmer temperatures due to latitude and limited spawning habitat are possible but unlikely explanations, and that competitive advantage for feeding sites by rainbow trout is an unlikely explanation. Additional field work should focus on comparative studies of the reproductive success and the early life stage mortalities of brook and rainbow trout among Appalachian streams with varying rainbow trout dominance. 53 refs., 11 figs.

  10. TOXICITY OF 2,3,7,8-TETRACHLORODIBENZO-P-DIOXIN TO EARLY LIFE STAGE BROOK TROUT (SALVELINUS FONTINALIS) FOLLOWING PARTENTAL DIETARY EXPOSURE

    EPA Science Inventory

    The toxicity of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) to the early life stages of F1 generation brook trout (Salvelinus fontinalis) was determined, when dosed by maternal transfer.Effects were compared across six treatments, including a control.The experimental groups, based...

  11. TOXICITY OF 2,3,7,8-TETRACHLORODIBENZO-P-DIOXIN TO EARLY LIFE STAGE BROOK TROUT (SALVELINUS FONTINALIS) FOLLOWING PARENTAL DIETARY EXPOSURE

    EPA Science Inventory

    The toxicity of TCDD to early life stages of F1 generation brook trout (Salvelinus fontinalis) was determined when dosed by maternal transfer. Effects were compared across six treatments including a control. The experimental groups based on TCDD concentrations in freshly spawned ...

  12. ACIDIFICATION TRENDS AND THE EVOLUTION OF NEUTRALIZATION MECHANISMS THROUGH TIME AT THE BEAR BROOK WATERSHED IN MAINE (BBWM), U.S.A.

    EPA Science Inventory

    The paired catchment study at the forested Bear Brook Watershed in Maine (BBWM) U.S.A. documents interactions among short- to long-term processes of acidification. In 1987-1989, runoff from the two catchments was nearly identical in quality and quantity. Ammonium sulfate has been...

  13. Sedimentology and stratigraphy of the Kanayut Conglomerate, central Brooks Range, Alaska; report of 1980 field season

    USGS Publications Warehouse

    Nilsen, T.H.; Moore, T.E.; Balin, D.F.; Johnson, S.Y.

    1982-01-01

    The Upper Devonian Kanayut Conglomerate crops out along the crest of the Brooks Range of northern Alaska for a distance of almost 1000 km. It ranges in thickness from 2600 m in the Atigun River area to 700 m south of Anaktuvuk Pass and has been subdivided into four regionally persistent members: (a) the basal sandstone member, consisting of marine sandstone and shale with some conglomerate; (b) the lower shale member, consisting of nonmarine quartzite, conglomerate and shale; (c) the middle conglomerate member, consisting of nonmarine pebble and cobble conglomerate and quartzite; and (d) the Stuver Member, consisting of nonmarine sandstone and shale. The Kanayut conformably overlies the Upper Devonian marine Hunt Fork Shale and is conformably overlain by the Mississippian marine Kayak Shale. The Kanayut is wholly allochthonous and has probably been transported northward on a series of thrust plates. The basal sandstone member of the Kanayut Conglomerate, which overlies prodelta turbidites of the Hunt Fork Shale, contains marginal-marine coarsening-upward channel-mouth bar sequences. It is conformably overlain by the lower shale member. Measured sections of the nonmarine members of the Kanayut show that the lower shale member ranges in thickness from 120 m to 1115 m and consists of fining-upward cycles interpreted to have been deposited by meandering streams on a broad floodplain. These cycles contain, in ascending order, channelized basal conglomerate, trough cross-stratified sandstone, and ripple-marked siltstone. The cycles are interpreted to be channel and point-bar deposits. Individual cycles average about 10 m in thickness and are separated by intervals of black, brown or maroon floodplain shale deposits. These typically contain thin coarsening-upward units that probably represent prograding levee sequences and irregular and ungraded sandstone bodies interpreted to be crevasse-splay deposits. In the Okokmilaga River area, the lower shale member contains a

  14. Depositional settings, correlation, and age carboniferous rocks in the western Brooks Range, Alaska

    USGS Publications Warehouse

    Dumoulin, J.A.; Harris, A.G.; Blome, C.D.; Young, L.E.

    2004-01-01

    The Kuna Formation (Lisburne Group) in northwest Alaska hosts the Red Dog and other Zn-Pb-Ag massive sulfide deposits in the Red Dog district. New studies of the sedimentology and paleontology of the Lisburne Group constrain the setting, age, and thermal history of these deposits. In the western and west-central Brooks Range, the Lisburne Group includes both deep- and shallow-water sedimentary facies and local volcanic rocks that are exposed in a series of thrust sheets or allochthons. Deep-water facies in the Red Dog area (i.e., the Kuna Formation and related rocks) are found chiefly in the Endicott Mountains and structurally higher Picnic Creek allochthons. In the Red Dog plate of the Endicott Mountains allochthon, the Kuna consists of at least 122 m of thinly interbedded calcareous shale, calcareous spiculite, and bioclastic supportstone (Kivalina unit) overlain by 30 to 240 m of siliceous shale, mudstone, calcareous radiolarite, and calcareous lithic turbidite (Ikalukrok unit). The Ikalukrok unit in the Red Dog plate hosts all massive sulfide deposits in the area. It is notably carbonaceous, is generally finely laminated, and contains siliceous sponge spicules and radiolarians. The Kuna Formation in the Key Creek plate of the Endicott Mountains allochthon (60-110 m) resembles the Ikalukrok unit but is unmineralized and has thinner carbonate layers that are mainly organic-rich dolostone. Correlative strata in the Picnic Creek allochthon include less shale and mudstone and more carbonate (mostly calcareous spiculite). Conodonts and radiolarians indicate an age range of Osagean to early Chesterian (late Early to Late Mississippian) for the Kuna in the Red Dog area. Sedimentologic, faunal, and geochemical data imply that most of the Kuna formed in slope and basin settings characterized by anoxic or dysoxic bottom water and by local high productivity. Shallow-water facies of th e Lisburne Group in the Red Dog area are present locally in the Endicott Mountains

  15. Regional variations in the fluvial Upper Devonian and Lower Mississippian(?) Kanayut Conglomerate, Brooks Range, Alaska

    NASA Astrophysics Data System (ADS)

    Moore, Thomas E.; Nilsen, Tor H.

    1984-03-01

    The wholly allochthonous Upper Devonian and Lower Mississippian(?) Kanayut Conglomerate is one of the most extensive fluvial deposits in North America. It crops out for 950 km along the crest of the Brooks Range in a series of thrust plates and is as thick as 2615 m. The Kanayut forms the fluvial part of a large, coarse-grained delta. The lower part of the Kanayut (the Ear Peak Member) overlies marginal-marine and prodelta turbidite deposits and consists of fining-upward meandering-stream-channel cycles of conglomerate and sandstone within black to maroon floodplain shale deposits. The middle part of the Kanayut (the Shainin Lake Member) lacks shale and consists of fining-upward couplets of channelized conglomerate and parallel- to cross-stratified sandstone interpreted as braidplain deposits. These deposits contain the largest clasts (23 cm) and were deposited during maximum progradation of the fluvial sequence. The upper part of the Kanayut (the Stuver Member), which consists of fining-upward meandering stream cycles similar to those of the lower part, grades upward into overlying Lower Mississippian tidal and marginal-marine deposits. Paleocurrent data and distribution of largest clasts indicate that the Kanayut was deposited by southwest-flowing streams fed by at least two major trunk streams that drained a mountainous region to the north and east. Comparison of stratigraphic and sedimentologic data collected at three selected locations representative of proximal, intermediate and distal parts of the Kanayut basin reveal regional variations in its fluvial character. These include a decrease in total thickness of fluvial strata, an increase in total thickness of associated marine sandstone, the pinch-out of the coarse-grained middle part of the Kanayut and decreases in the conglomerate/sandstone and sandstone/shale ratios from proximal to distal areas of the basin. The coarse-grained parts of the fluvial cycles decrease in thickness and lateral extent from

  16. Regional variations in the fluvial Upper Devonian and Lower Mississippian(?) Kanayut Conglomerate, Brooks Range, Alaska

    USGS Publications Warehouse

    Moore, T.E.; Nilsen, T.H.

    1984-01-01

    The wholly allochthonous Upper Devonian and Lower Mississippian(?) Kanayut Conglomerate is one of the most extensive fluvial deposits in North America. It crops out for 950 km along the crest of the Brooks Range in a series of thrust plates and is as thick as 2615 m. The Kanayut forms the fluvial part of a large, coarse-grained delta. The lower part of the Kanayut (the Ear Peak Member) overlies marginal-marine and prodelta turbidite deposits and consists of fining-upward meandering-stream-channel cycles of conglomerate and sandstone within black to maroon floodplain shale deposits. The middle part of the Kanayut (the Shainin Lake Member) lacks shale and consists of fining-upward couplets of channelized conglomerate and parallel- to cross-stratified sandstone interpreted as braidplain deposits. These deposits contain the largest clasts (23 cm) and were deposited during maximum progradation of the fluvial sequence. The upper part of the Kanayut (the Stuver Member), which consists of fining-upward meandering stream cycles similar to those of the lower part, grades upward into overlying Lower Mississippian tidal and marginal-marine deposits. Paleocurrent data and distribution of largest clasts indicate that the Kanayut was deposited by southwest-flowing streams fed by at least two major trunk streams that drained a mountainous region to the north and east. Comparison of stratigraphic and sedimentologic data collected at three selected locations representative of proximal, intermediate and distal parts of the Kanayut basin reveal regional variations in its fluvial character. These include a decrease in total thickness of fluvial strata, an increase in total thickness of associated marine sandstone, the pinch-out of the coarse-grained middle part of the Kanayut and decreases in the conglomerate/sandstone and sandstone/shale ratios from proximal to distal areas of the basin. The coarse-grained parts of the fluvial cycles decrease in thickness and lateral extent from

  17. Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis

    PubMed Central

    Sauvage, Christopher; Vagner, Marie; Derôme, Nicolas; Audet, Céline; Bernatchez, Louis

    2012-01-01

    A linkage map of 40 linkage groups (LGs) was developed for brook charr, Salvelinus fontinalis, using an F2 interstrain hybrid progeny (n = 171) and 256 coding gene SNP developed specifically for brook charr and validated from a large (>1000) subset of putative SNP, as well as 81 microsatellite markers. To identify quantitative trait loci (QTL) related to reproduction functions, these fish were also phenotyped at six physiological traits, including spermatozoid head diameter, sperm concentration, plasma testosterone, plasma 11-keto-testosterone, egg diameter, and plasma 17β-estradiol. Five significant QTL were detected over four LGs for egg diameter and plasma 17β-estradiol concentration in females, and sperm concentration as well as spermatozoid head diameter in males. In females, two different QTLs located on LG 11 and LG 34 were associated with the egg number, whereas one QTL was associated with plasma 17β-estradiol concentration (LG 8). Their total percent variance explained (PVE) was 26.7% and 27.6%, respectively. In males, two QTL were also detected for the sperm concentration, and their PVE were estimated at 18.58% and 14.95%, respectively. The low QTL number, associated with the high PVE, suggests that the variance in these reproductive physiological traits was either under the control of one major gene or a small number of genes. The QTL associated with sperm concentration, plasma 17β-estradiol, and egg diameter appeared to be under a dominance effect, whereas the two others were under a negative additive effect. These results show that genes underlying the phenotypic variance of these traits are under different modes of action (additive vs. dominance) and may be used to predict an increase or a decrease in their phenotypic values in subsequent generations of selective breeding. Moreover, this newly developed panel of mapped SNP located in coding gene regions will be useful for screening wild populations, especially in the context of investigating the

  18. Coding Gene SNP Mapping Reveals QTL Linked to Growth and Stress Response in Brook Charr (Salvelinus fontinalis)

    PubMed Central

    Sauvage, Christopher; Vagner, Marie; Derôme, Nicolas; Audet, Céline; Bernatchez, Louis

    2012-01-01

    Growth performance and reduced stress response are traits of major interest in fish production. Growth and stress-related quantitative trait loci (QTL) have been already identified in several salmonid species, but little effort has been devoted to charrs (genus Salvelinus). Moreover, most QTL studies to date focused on one or very few traits, and little investigation has been devoted to QTL identification for gene expression. Here, our objective was to identify QTL for 27 phenotypes related to growth and stress responses in brook charr (Salvelinus fontinalis), which is one of the most economically important freshwater aquaculture species in Canada. Phenotypes included 12 growth parameters, six blood and plasma variables, three hepatic variables, and one plasma hormone level as well as the relative expression measurements of five genes of interest linked to growth regulation. QTL analysis relied on a linkage map recently built from S. fontinalis consisting of both single-nucleotide polymorphism (SNP, n = 266) and microsatellite (n =81) markers in an F2 interstrain hybrid population (n = 171). We identified 63 growth-related QTL and four stress-related QTL across 18 of the 40 linkage groups of the brook charr linkage map. Percent variance explained, confidence interval, and allelic QTL effects also were investigated to provide insight into the genetic architecture of growth- and stress-related QTL. QTL related to growth performance and stress response that were identified could be classified into two groups: (1) a group composed of the numerous, small-effect QTL associated with some traits related to growth (i.e., weight) that may be under the control of a large number of genes or pleiotropic genes, and (2) a group of less numerous QTL associated with growth (i.e., gene expression) and with stress-related QTL that display a larger effect, suggesting that these QTL are under the control of a limited number of genes of major effect. This study represents a first step

  19. The identification of GPR3 inverse agonist AF64394; the first small molecule inhibitor of GPR3 receptor function.

    PubMed

    Jensen, Thomas; Elster, Lisbeth; Nielsen, Søren Møller; Poda, Suresh Babu; Loechel, Frosty; Volbracht, Christiane; Klewe, Ib Vestergaard; David, Laurent; Watson, Stephen P

    2014-11-15

    The identification of the novel and selective GPR3 inverse agonist AF64394, the first small molecule inhibitor of GPR3 receptor function, is described. Structure activity relationships and syntheses based around AF64394 are reported.

  20. Heterozygous Cylindromatosis Gene Mutation c.1628_1629delCT in a Family with Brook-Spiegler Syndrome.

    PubMed

    Aguilera, Cintia Arjona; De la Varga Martínez, Raquel; García, Lidia Ossorio; Jiménez-Gallo, David; Planelles, Cristina Albarrán; Barrios, Mario Linares

    2016-01-01

    Brooke-Spiegler Syndrome (BSS) is a rare genodermatosis characterized by the progressive formation of adnexal skin tumors in the scalp and face, mainly trichoepitheliomas, cylindromas, and spiradenomas. It has also been associated with salivary glands neoplasms. It is due to mutations in the tumor suppressor gene cylindromatosis (CYLD gene) localized on chromosome 16q12-q13. Around 93 mutations have been described. The study of CYLD gene in patients and their relatives is of vital importance to establish the molecular diagnosis and offer appropriate genetic counseling. There is a low risk of malignancy and patients require long-term follow-up. A case of BSS in a family is described. The existence of the genetic mutation at the CYLD gene c. 1628_1629delCT in three of the women affected was demonstrated. This mutation has only been described once in a previous study. PMID:27688459

  1. Impacts of a gape limited Brook Trout, Salvelinus fontinalis, on larval Northwestern salamander, Ambystoma gracile, growth: A field enclosure experiment

    USGS Publications Warehouse

    Currens, C.R.; Liss, W.J.; Hoffman, R.L.

    2007-01-01

    The formation of amphibian population structure is directly affected by predation. Although aquatic predators have been shown to have direct negative effects on larval salamanders in laboratory and field experiments, the potential impacts of gape-limited fish on larval salamander growth has been largely underexplored. We designed an enclosure experiment conducted in situ to quantify the effects of gape-limited Brook Trout (Salvelinus fontinalis) on larval Northwestern Salamander (Ambystoma gracile) growth. We specifically tested whether the presence of fish too small to consume larvae had a negative effect on larval growth. The results of this study indicate that the presence of a gape-limited S. fontinalis can have a negative effect on growth of larval A. gracile salamanders. Copyright 2007 Society for the Study of Amphibians and Reptiles.

  2. Size-dependent survival of brook trout Salvelinus fontinalis in summer: effects of water temperature and stream flow.

    PubMed

    Xu, C L; Letcher, B H; Nislow, K H

    2010-06-01

    A 5 year individual-based data set was used to estimate size-specific survival rates in a wild brook trout Salvelinus fontinalis population in a stream network encompassing a mainstem and three tributaries (1.5-6 m wetted width), western Massachusetts, U.S.A. The relationships between survival in summer and temperature and flow metrics derived from continuous monitoring data were then tested. Increased summer temperatures significantly reduced summer survival rates for S. fontinalis in almost all size classes in all four sites throughout the network. In contrast, extreme low summer flows reduced survival of large fish, but only in small tributaries, and had no significant effects on fish in smaller size classes in any location. These results provide direct evidence of a link between season-specific survival and environmental factors likely to be affected by climate change and have important consequences for the management of both habitats and populations.

  3. In situ bioassays of brook trout (salvelinus fontinalis) and blacknose dace (rhinichthys atratulus) in adirondack streams affected by episodic acidification

    SciTech Connect

    Simonin, H.A.; Kretser, W.A.; Bath, D.W.; Olson, M.; Gallagher, J.

    1993-01-01

    In situ bioassays were conducted using native Adirondack brook trout and blacknose dace in four headwater streams. Conductivity, pH, temperature, and stage height were monitored continuously, and water samples for laboratory analysis were collected during hydrologic episodes. Fish survived well during baseflow conditions, but during periods of spring snowmelt or large precipitation events, survival was poor. Bioassay fish that had been in the stream 15-24 d survived episodes better than fish that had either not become acclimatized or recovered from handling. Duration of exposure to acidic episodes was critical. Extended periods of poor water quality resulted in fish mortality and may be more important to native populations than short acidic episodes.

  4. Medical politician and man of Olympian vision and energy: Dr William Penny Brookes (1809-95) of Much Wenlock.

    PubMed

    Connor, Henry

    2012-08-01

    William Penny Brookes lived all his life in Much Wenlock in Shropshire where he worked as a general practitioner for 60 years. He is now best remembered as the founder of the Wenlock Olympian Society, as a founding member of the first national Olympian association and for his influence on Baron Pierre de Coubertin, the founder of the modern Olympic movement. He was a tireless campaigner for the introduction of physical education and a lessening of the academic workload in elementary schools. He was also an important figure in the medical reform movement of the mid-19th century. In Much Wenlock he was a much respected philanthropist and was involved in many civic activities. He was also a notable botanist and antiquarian.

  5. Professional Development of Teachers--A Prerequisite for AfL to Be Successfully Implemented in the Classroom

    ERIC Educational Resources Information Center

    Smith, Kari

    2011-01-01

    A prerequisite for AfL to be successfully implemented in the classroom is the teachers' assessment practice. In many contexts, including the Norwegian, AfL has not been successfully dealt with during initial teacher education, and there is a need for qualified teachers to engage in professional development in AfL. This article first discusses…

  6. Stochastic life history modeling for managing regional-scale freshwater fisheries: an experimental study of brook trout.

    PubMed

    Adams, Blair K; Cote, David; Fleming, Ian A

    2016-04-01

    Environmental heterogeneity can combine with evolutionary responses to create very dynamic and often locally independent populations across a landscape. Such complexity creates difficulties for managers trying to conserve populations across large areas. This study develops, applies, and tests the use of stochastic life history modeling and Monte Carlo simulation to assess management scenarios related to the realities of regional fisheries management and conservation. We apply this approach to the management of recreational brook trout (Salvelinus fontinalis) fishing; an activity that can severely impact species balance, abundance, and the size structure of fish communities. Specifically, the model incorporates population-specific life-history information (e.g., growth rate, reproductive effort, and survival) to allow forecasts of the impact of various management strategies and/or changes to environmental conditions on a population's ecological characteristics (e.g., size structure, abundance, and probability of persistence). Sampling was carried out in 16 water bodies spread across four sites in Atlantic Canada. Each water body was sampled in 2005 and reassessed in 2008. This sampling had two primary objectives: (1) define a significant proportion of life-history variation of brook trout in Atlantic Canada, and (2) to test the precision and accuracy of model predictions of population responses to experimental exploitation and management changes. The model successfully predicted population responses to changes in adult survival in 12 of 13 populations having sufficient data for validation testing, while also proving to be a useful tool when engaging stakeholders regarding management options and their associated risk. We suggest that such models are cost-effective and have great potential for informing proactive management of jurisdictions with numerous and diverse populations. PMID:27411259

  7. U/Pb dating of subduction-collision in the Brooks Range: implications for Mesozoic geodynamics of Arctic Alaska

    NASA Astrophysics Data System (ADS)

    Lemonnier, Nicolas; Labrousse, Loic; Agard, Philippe; McClelland, Bill; Cobble, Mattew; Till, Alison; Roeske, Sarah

    2016-04-01

    The paleogeographic and geodynamic evolution of Northern Alaska is crucial to understand the connection between the Arctic and Pacific realms. The opening of the Canada Basin (CB) is debated both in terms of inception time (between 190 and 140 Ma) and driving mechanisms. The prevalent model assumes that CB opened in a back-arc position within the Arctic-Alaska-Chukotka (AAC) terrane following a change in subduction polarity from S- to N-dipping subduction The adjacent Brooks Range orogen (BRO) is thought to have formed when the Koyukuk volcanic arc collided with the southern extension of AAC. This collision therefore potentially provides key information for Arctic geodynamics, and for the mechanisms of CB opening, but neither the detailed timing of this collisional history nor its duration are well known. In order to constrain the timing of the collision, we performed in-situ zircon U-Pb SIMS analyses on eclogites from the BRO s.l. (BR and Seward Peninsula), which indicate that peak burial (at 510 ± 60°C, 1.6 ± 0.2 GPa) during continental subduction and subsequent collision occurred at 141 ± 6 Ma (n=10, MSWD = 1.6). Eclogite metamorphism therefore postdates the initial rifting stage of the CB but predates effective sea-floor spreading. Younger zircon domains (114 ± 13 Ma) associated with retrograde assemblages could indicate a late thermal pulse or recrystallisation during exhumation in the collisional wedge. Combined with all available information on timing, these new age constraints are used to build a tectonic model for coeval evolution of the Brooks Range and the Canada Basin. The intra-Kingak "Jurassic Unconformity" at the Jurassic Cretaceous Boundary (Houseknecht, pers. communication) could actually be considered as the signature of the AAC-Koyukuk arc collision stage in the CB.

  8. Chromosomal characteristics and distribution of rDNA sequences in the brook trout Salvelinus fontinalis (Mitchill, 1814).

    PubMed

    Śliwińska-Jewsiewicka, A; Kuciński, M; Kirtiklis, L; Dobosz, S; Ocalewicz, K; Jankun, Malgorzata

    2015-08-01

    Brook trout Salvelinus fontinalis (Mitchill, 1814) chromosomes have been analyzed using conventional and molecular cytogenetic techniques enabling characteristics and chromosomal location of heterochromatin, nucleolus organizer regions (NORs), ribosomal RNA-encoding genes and telomeric DNA sequences. The C-banding and chromosome digestion with the restriction endonucleases demonstrated distribution and heterogeneity of the heterochromatin in the brook trout genome. DNA sequences of the ribosomal RNA genes, namely the nucleolus-forming 28S (major) and non-nucleolus-forming 5S (minor) rDNAs, were physically mapped using fluorescence in situ hybridization (FISH) and primed in situ labelling. The minor rDNA locus was located on the subtelo-acrocentric chromosome pair No. 9, whereas the major rDNA loci were dispersed on 14 chromosome pairs, showing a considerable inter-individual variation in the number and location. The major and minor rDNA loci were located at different chromosomes. Multichromosomal location (3-6 sites) of the NORs was demonstrated by silver nitrate (AgNO3) impregnation. All Ag-positive i.e. active NORs corresponded to the GC-rich blocks of heterochromatin. FISH with telomeric probe showed the presence of the interstitial telomeric site (ITS) adjacent to the NOR/28S rDNA site on the chromosome 11. This ITS was presumably remnant of the chromosome rearrangement(s) leading to the genomic redistribution of the rDNA sequences. Comparative analysis of the cytogenetic data among several related salmonid species confirmed huge variation in the number and the chromosomal location of rRNA gene clusters in the Salvelinus genome.

  9. The Wageningen Lowland Runoff Simulator (WALRUS): implementation and application to the freely draining Hupsel Brook catchment and controlled Cabauw polder

    NASA Astrophysics Data System (ADS)

    Brauer, Claudia; Torfs, Paul; Teuling, Ryan; Uijlenhoet, Remko

    2014-05-01

    Recently, we developed the Wageningen Lowland Runoff Simulator (WALRUS) to fill the gap between complex, spatially distributed models which are often used in lowland catchments and simple, parametric models which have mostly been developed for mountainous catchments. This parametric rainfall-runoff model can be used all over the world in both freely draining lowland catchments and polders with controlled water levels. Here, we present the model implementation, opportunities for practical application and experience from validation studies with data from two field sites. The open source model code is implemented in R and is set-up such that it can be used by both practitioners and researchers. For direct use by practitioners, defaults are implemented for relations between model variables and to compute initial conditions, leaving only four parameters which require calibration. For research purposes, the defaults can easily be changed. WALRUS is computationally efficient, which allows operational forecasting and uncertainty estimation by creating ensembles. An approach for flexible time steps increases numerical stability and makes model parameter values independent of time step size, which facilitates use of the model with the same parameter set for multi-year water balance studies as well as detailed analyses of individual flood peaks. We applied WALRUS to two contrasting Dutch catchments: the slightly sloping, freely draining Hupsel Brook catchment and the flat Cabauw polder with controlled water levels. In both catchments, WALRUS performs well during the years used for calibration and validation. The model also performs well during extremely wet periods (flash flood in the Hupsel Brook catchment in August 2010) and extremely dry periods (summer 1976) and can forecast the effect of control operations (changing weir elevations and surface water supply).

  10. Geology of the Upper Devonian and Lower Mississippian( ) Kanayut Conglomerate in the central and eastern Brooks Range

    SciTech Connect

    Brosge, W.P.; Nilsen, T.H.; Moore, T.E.; Dutro, J.T. Jr.

    1989-01-01

    The nonmarine Upper Devonian and Lower Mississippian( ) Kanayut Conglomerate and related clastic rocks of the Endicott Group crop out continuously in a belt approximately 640 km long by 65 km wide in the north-central and southeastern Brooks Range, from about long 144{degree} to 158{degree} W., between the Sheenjek and Kuna Rivers. The Endicott Group also crops out discontinuously for another 250 km westward, in the DeLong and Baird Mountains, between the Kuna River and the Chukchi Sea. Although only 270 km of their outcrop belt lies within the National Petroleum Reserve in Alaska (NPRA), the Kanayut and related units may extend northward beneath the North Slope and could be correlative with clastic middle Paleozoic strata present in the subsurface within the NPRA. The authors have mapped the Kanayut Conglomerate in the central and eastern Brooks Range at a scale of 1:250,000 and have made stratigraphic, sedimentologic, petrographic, and paleontologic analyses to determine the depositional history and tectonic framework for these nonmarine clastic rocks in the eastern 640 km of their outcrop belt. In this chapter they present general results from their study of the Kanayut Conglomerate and suggest models for its depositional and structural history. They also show the distribution of mappable units within the Kanayut at a scale of 1:500,000. Previous results were published as a series of open-file reports, circular articles, and maps. Nomenclature of the Kanayut Conglomerate and associated units has been revised by Nilsen and Moore after the mapping for plate 14.1 was completed.

  11. Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks

    USGS Publications Warehouse

    Kanno, Yoichiro; Vokoun, Jason C.; Letcher, Benjamin H.

    2011-01-01

    Linear and heterogeneous habitat makes headwater stream networks an ideal ecosystem in which to test the influence of environmental factors on spatial genetic patterns of obligatory aquatic species. We investigated fine-scale population structure and influence of stream habitat on individual-level genetic differentiation in brook trout (Salvelinus fontinalis) by genotyping eight microsatellite loci in 740 individuals in two headwater channel networks (7.7 and 4.4 km) in Connecticut, USA. A weak but statistically significant isolation-by-distance pattern was common in both sites. In the field, many tagged individuals were recaptured in the same 50-m reaches within a single field season (summer to fall). One study site was characterized with a hierarchical population structure, where seasonal barriers (natural falls of 1.5–2.5 m in height during summer base-flow condition) greatly reduced gene flow and perceptible spatial patterns emerged because of the presence of tributaries, each with a group of genetically distinguishable individuals. Genetic differentiation increased when pairs of individuals were separated by high stream gradient (steep channel slope) or warm stream temperature in this site, although the evidence of their influence was equivocal. In a second site, evidence for genetic clusters was weak at best, but genetic differentiation between individuals was positively correlated with number of tributary confluences. We concluded that the population-level movement of brook trout was limited in the study headwater stream networks, resulting in the fine-scale population structure (genetic clusters and clines) even at distances of a few kilometres, and gene flow was mitigated by ‘riverscape’ variables, particularly by physical barriers, waterway distance (i.e. isolation-by-distance) and the presence of tributaries.

  12. Intraspecific variation in thermal tolerance and acclimation capacity in brook trout (Salvelinus fontinalis): physiological implications for climate change.

    PubMed

    Stitt, Bradley C; Burness, Gary; Burgomaster, Kirsten A; Currie, Suzanne; McDermid, Jenni L; Wilson, Chris C

    2014-01-01

    Cold-water fishes are becoming increasingly vulnerable as changing thermal conditions threaten their future sustainability. Thermal stress and habitat loss from increasing water temperatures are expected to impact population viability, particularly for inland populations with limited adaptive resources. Although the long-term persistence of cold-adapted species will depend on their ability to cope with and adapt to changing thermal conditions, very little is known about the scope and variation of thermal tolerance within and among conspecific populations and evolutionary lineages. We studied the upper thermal tolerance and capacity for acclimation in three captive populations of brook trout (Salvelinus fontinalis) from different ancestral thermal environments. Populations differed in their upper thermal tolerance and capacity for acclimation, consistent with their ancestry: the northernmost strain (Lake Nipigon) had the lowest thermal tolerance, while the strain with the most southern ancestry (Hill's Lake) had the highest thermal tolerance. Standard metabolic rate increased following acclimation to warm temperatures, but the response to acclimation varied among strains, suggesting that climatic warming may have differential effects across populations. Swimming performance varied among strains and among acclimation temperatures, but strains responded in a similar way to temperature acclimation. To explore potential physiological mechanisms underlying intraspecific differences in thermal tolerance, we quantified inducible and constitutive heat shock proteins (HSP70 and HSC70, respectively). HSPs were associated with variation in thermal tolerance among strains and acclimation temperatures; HSP70 in cardiac and white muscle tissues exhibited similar patterns, whereas expression in hepatic tissue varied among acclimation temperatures but not strains. Taken together, these results suggest that populations of brook trout will vary in their ability to cope with a

  13. Stochastic life history modeling for managing regional-scale freshwater fisheries: an experimental study of brook trout.

    PubMed

    Adams, Blair K; Cote, David; Fleming, Ian A

    2016-04-01

    Environmental heterogeneity can combine with evolutionary responses to create very dynamic and often locally independent populations across a landscape. Such complexity creates difficulties for managers trying to conserve populations across large areas. This study develops, applies, and tests the use of stochastic life history modeling and Monte Carlo simulation to assess management scenarios related to the realities of regional fisheries management and conservation. We apply this approach to the management of recreational brook trout (Salvelinus fontinalis) fishing; an activity that can severely impact species balance, abundance, and the size structure of fish communities. Specifically, the model incorporates population-specific life-history information (e.g., growth rate, reproductive effort, and survival) to allow forecasts of the impact of various management strategies and/or changes to environmental conditions on a population's ecological characteristics (e.g., size structure, abundance, and probability of persistence). Sampling was carried out in 16 water bodies spread across four sites in Atlantic Canada. Each water body was sampled in 2005 and reassessed in 2008. This sampling had two primary objectives: (1) define a significant proportion of life-history variation of brook trout in Atlantic Canada, and (2) to test the precision and accuracy of model predictions of population responses to experimental exploitation and management changes. The model successfully predicted population responses to changes in adult survival in 12 of 13 populations having sufficient data for validation testing, while also proving to be a useful tool when engaging stakeholders regarding management options and their associated risk. We suggest that such models are cost-effective and have great potential for informing proactive management of jurisdictions with numerous and diverse populations.

  14. Critical behavior of a triangular lattice Ising AF/FM bilayer

    NASA Astrophysics Data System (ADS)

    Žukovič, M.; Bobák, A.

    2016-03-01

    We study a bilayer Ising spin system consisting of antiferromagnetic (AF) and ferromagnetic (FM) triangular planes, coupled by ferromagnetic exchange interaction, by standard Monte Carlo and parallel tempering methods. The AF/FM bilayer is found to display the critical behavior completely different from both the single FM and AF constituents as well as the FM/FM and AF/AF bilayers. Namely, by finite-size scaling (FSS) analysis we identify at the same temperature a standard Ising transition from the paramagnetic to FM state in the FM plane that induces a ferrimagnetic state with a finite net magnetic moment in the AF plane. At lower temperatures there is another phase transition, that takes place only in the AF plane, to different ferrimagnetic state with spins on two sublattices pointing parallel and on one sublattice antiparallel to the spins on the FM plane. FSS indicates that the corresponding critical exponents are close to the two-dimensional three-state ferromagnetic Potts model values.

  15. Patterns of missplicing due to somatic U2AF1 mutations in myeloid neoplasms

    PubMed Central

    Przychodzen, Bartlomiej; Jerez, Andres; Guinta, Kathryn; Sekeres, Mikkael A.; Padgett, Richard; Maciejewski, Jaroslaw P.

    2013-01-01

    Recently, recurrent mutations of spliceosomal genes were frequently identified in myeloid malignancies, as well as other types of cancers. One of these spliceosomal genes, U2AF1, was affected by canonical somatic mutations in aggressive type of myeloid malignancies. We hypothesized that U2AF1 mutations causes defects of splicing (missplicing) in specific genes and that such misspliced genes might be important in leukemogenesis. We analyzed RNA deep sequencing to compare splicing patterns of 201 837 exons between the cases with U2AF1 mutations (n = 6) and wild type (n = 14). We identified different alternative splicing patterns in 35 genes comparing cells with mutant and wild-type U2AF1. U2AF1 mutations are associated with abnormal splicing of genes involved in functionally important pathways, such as cell cycle progression and RNA processing. In addition, many of these genes are somatically mutated or deleted in various cancers. Of note is that the alternative splicing patterns associated with U2AF1 mutations were associated with specific sequence signals at the affected splice sites. These novel observations support the hypothesis that U2AF1 mutations play a significant role in myeloid leukemogenesis due to selective missplicing of tumor-associated genes. PMID:23775717

  16. Hospitalizations in patients with atrial fibrillation: an analysis from ROCKET AF

    PubMed Central

    DeVore, Adam D.; Hellkamp, Anne S.; Becker, Richard C.; Berkowitz, Scott D.; Breithardt, Guenter; Hacke, Werner; Halperin, Jonathan L.; Hankey, Graeme J.; Mahaffey, Kenneth W.; Nessel, Christopher C.; Singer, Daniel E.; Fox, Keith A. A.; Patel, Manesh R.; Piccini, Jonathan P.

    2016-01-01

    Aims The high costs associated with treatment for atrial fibrillation (AF) are primarily due to hospital care, but there are limited data to understand the reasons for and predictors of hospitalization in patients with AF. Methods and results The ROCKET AF trial compared rivaroxaban with warfarin for stroke prophylaxis in AF. We described the frequency of and reasons for hospitalization during study follow-up and utilized Cox proportional hazards models to assess for baseline characteristics associated with all-cause hospitalization. Of 14 171 patients, 14% were hospitalized at least once. Of 2614 total hospitalizations, 41% were cardiovascular including 4% for AF; of the remaining, 12% were for bleeding. Compared with patients not hospitalized, hospitalized patients were older (74 vs. 72 years), and more frequently had diabetes (46 vs. 39%), prior MI (23 vs. 16%), and paroxysmal AF (19 vs. 17%), but less frequently had prior transient ischaemic attack/stroke (49 vs. 56%). After multivariable adjustment, lung disease [hazard ratio (HR) 1.46, 95% confidence interval (CI) 1.29–1.66], diabetes [1.22, (1.11–1.34)], prior MI [1.27, (1.13–1.42)], and renal dysfunction [HR 1.07 per 5 unit GFR < 65 mL/min, (1.04–1.10)] were associated with increased hospitalization risk. Treatment assignment was not associated with differential rates of hospitalization. Conclusion Nearly 1 in 7 of the moderate-to-high-risk patients with AF enrolled in this trial was hospitalized within 2 years, and both AF and bleeding were rare causes of hospitalization. Further research is needed to determine whether care pathways directed at comorbid conditions among AF patients could reduce the need for and costs associated with hospitalization. PMID:27174904

  17. Air resources

    SciTech Connect

    1995-10-01

    This section describes the ambient (surrounding) air quality of the TVA region, discusses TVA emission contributions to ambient air quality, and identifies air quality impacts to human health and welfare. Volume 2 Technical Document 2, Environmental Consequences, describes how changes in TVA emissions could affect regional air quality, human health, environmental resources, and materials. The primary region of the affected environment is broadly defined as the state of Tennessee, as well as southern Kentucky, western Virginia, southern West Virginia, western North Carolina, and northern Georgia, Alabama, and Mississippi. This area represents the watershed of the Tennessee River and the 201 counties of the greater TVA service area. Emissions from outside the Tennessee Valley region contribute to air quality in the Valley. Also, TVA emissions are transported outside the Valley and have some impact on air quality beyond the primary study area. Although the study area experiences a number of air quality problems, overall air quality is good.

  18. The Inhibition of Inflammasome by Brazilian Propolis (EPP-AF)

    PubMed Central

    Hori, Juliana I.; Zamboni, Dario S.; Carrão, Daniel B.; Goldman, Gustavo Henrique; Berretta, Andresa A.

    2013-01-01

    Propolis extracts have gained the attention of consumers and researchers due to their unique chemical compositions and functional properties such as its anti-inflammatory activity. Recently, it was described a complex that is also important in inflammatory processes, named inflammasome. The inflammasomes are a large molecular platform formed in the cell cytosol in response to stress signals, toxins, and microbial infections. Once activated, the inflammasome induces caspase-1, which in turn induces the processing of inflammatory cytokines such as IL-1β and IL-18. So, to understand inflammasomes regulation becomes crucial to treat several disorders including autoinflammatory diseases. Since green propolis extracts are able to regulate inflammatory pathways, this work purpose was to investigate if this extract could also act on inflammasomes regulation. First, the extract was characterized and it demonstrated the presence of important compounds, especially Artepillin C. This extract was effective in reducing the IL-1β secretion in mouse macrophages and this reduction was correlated with a decrease in activation of the protease caspase-1. Furthermore, we found that the extract at a concentration of 30 μg/mL was not toxic to the cells even after a 18-hour treatment. Altogether, these data indicate that Brazilian green propolis (EPP-AF) extract has a role in regulating the inflammasomes. PMID:23690844

  19. Flacourtosides A-F, phenolic glycosides isolated from Flacourtia ramontchi.

    PubMed

    Bourjot, Mélanie; Leyssen, Pieter; Eydoux, Cécilia; Guillemot, Jean-Claude; Canard, Bruno; Rasoanaivo, Philippe; Guéritte, Françoise; Litaudon, Marc

    2012-04-27

    In an effort to identify novel inhibitors of chikungunya (CHIKV) and dengue (DENV) virus replication, a systematic study with 820 ethyl acetate extracts of madagascan plants was performed in a virus-cell-based assay for CHIKV, and a DENV NS5 RNA-dependent RNA polymerase (RdRp) assay. The extract obtained from the stem bark of Flacourtia ramontchi was selected for its significant activity in both assays. Six new phenolic glycosides, named flacourtosides A-F (1-6), phenolic glycosides itoside H, xylosmin, scolochinenoside D, and poliothrysoside, and betulinic acid 3β-caffeate were obtained using the bioassay-guided isolation process. Their structures were elucidated by comprehensive analyses of NMR spectroscopic and mass spectrometric data. Even though several extracts and fractions showed significant selective antiviral activity in the CHIKV virus-cell-based assay, none of the purified compounds did. However, in the DENV RNA polymerase assay, significant inhibition was observed with betulinic acid 3β-caffeate (IC(50) = 0.85 ± 0.1 μM) and to a lesser extent for the flacourtosides A and E (1 and 5, respectively), and scolochinenoside D (IC(50) values ~10 μM). PMID:22439591

  20. Air Pollution.

    ERIC Educational Resources Information Center

    Gilpin, Alan

    A summary of one of our most pressing environmental problems, air pollution, is offered in this book by the Director of Air Pollution Control for the Queensland (Australia) State Government. Discussion of the subject is not restricted to Queensland or Australian problems and policies, however, but includes analysis of air pollution the world over.…

  1. Cross-talk between two global regulators in Streptomyces: PhoP and AfsR interact in the control of afsS, pstS and phoRP transcription.

    PubMed

    Santos-Beneit, Fernando; Rodríguez-García, Antonio; Sola-Landa, Alberto; Martín, Juan F

    2009-04-01

    The regulatory proteins AfsR and PhoP control expression of the biosynthesis of actinorhodin and undecylprodigiosin in Streptomyces coelicolor. Electrophoretic mobility shift assays showed that PhoP(DBD) does not bind directly to the actII-ORF4, redD and atrA promoters, but it binds to the afsS promoter, in a region overlapping with the AfsR operator. DNase I footprinting studies revealed a PhoP protected region of 26 nt (PHO box; two direct repeats of 11 nt) that overlaps with the AfsR binding sequence. Binding experiments indicated a competition between AfsR and PhoP; increasing concentrations of PhoP(DBD) resulted in the disappearance of the AfsR-DNA complex. Expression studies using the reporter luxAB gene coupled to afsS promoter showed that PhoP downregulates afsS expression probably by a competition with the AfsR activator. Interestingly, AfsR binds to other PhoP-regulated promoters including those of pstS (a component of the phosphate transport system) and phoRP (encoding the two component system itself). Analysis of the AfsR-protected sequences in each of these promoters allowed us to distinguish the AfsR binding sequence from the overlapping PHO box. The reciprocal regulation of the phoRP promoter by AfsR and of afsS by PhoP suggests a fine interplay of these regulators on the control of secondary metabolism.

  2. Phosphorylation of AfsR by multiple serine/threonine kinases in Streptomyces coelicolor A3(2).

    PubMed

    Sawai, Reiko; Suzuki, Ayano; Takano, Yuji; Lee, Ping-Chin; Horinouchi, Sueharu

    2004-06-01

    AfsK, a protein serine/threonine kinase, autophosphorylates on serine and threonine residues and phosphorylates serine and threonine residues of AfsR, a transcriptional activator for afsS involved in secondary metabolism in Streptomyces coelicolor A3(2). pkaG encoding a 592-amino-acid protein and SCD10.09 (named afsL) encoding a 580-amino-acid protein, both of which encode an AfsK-like protein, were transcribed throughout growth. PkaG with a histidine-tag and the kinase catalytic domain of PkaG, produced in Escherichia coli, autophosphorylated dominantly on threonine and slightly on serine residues. In addition, these proteins phosphorylated AfsR on threonine and serine residues. The catalytic domain of AfsL also autophosphorylated and phosphorylated AfsR, on threonine and serine residues in both cases. AfsR was thus found to be phosphorylated by multiple kinases. Disruption of the chromosomal pkaG gene resulted in slightly reduced production of the pigmented antibiotic actinorhodin. These findings, together with the presence of about 40 AfsK homologues and at least five AfsR homologues in S. coelicolor A3(2), suggest that the regulatory networks via eukaryotic-type protein phosphorylation are more diverse and versatile than we have expected.

  3. Totally thorascopic surgical ablation of persistent AF and long-standing persistent atrial fibrillation using the "Dallas" lesion set.

    PubMed

    Edgerton, James R; Jackman, Warren M; Mahoney, Cecile; Mack, Michael J

    2009-12-01

    Minimally invasive surgery consisting of bipolar radiofrequency pulmonary vein (PV) isolation and limited ganglionated plexus ablation is effective in eliminating atrial fibrillation (AF) in patients with paroxysmal AF but is less effective in those with persistent AF or long-standing persistent AF. The purpose of this study was examine the results of minimally invasive surgery incorporating an additional set of radiofrequency ablation lines replicating a left-sided Cox maze III procedure. Thirty patients with persistent AF (n = 10) or long-standing persistent AF (n = 20) underwent minimally invasive surgery with an extended lesion set and PV isolation for a minimum follow-up of 6 months. Linear lesions were created at the roof line, at the anterior line, and between the roof line and the left atrial appendage. All patients underwent limited ganglionated plexus ablation and left atrial appendage excision as well as PV isolation verification. Block across the roof and anterior lines was confirmed in 29 (96.6%) of the 30 patients. Follow-up included 2-week event monitoring with auto-trigger in 21 patients, pacemaker interrogation in 8, and ECG in 1 who was in AF and refused longer-term monitoring. No operative mortality or major morbidity occurred. At 6 months, 24 (80%) of the 30 patients were free of AF: 15 (75%) with long-standing persistent AF and 9 (90%) with persistent AF. Among the six failures, burden of AF was low: one had 1 episode >15 seconds, two had 4 episodes, one had 6 episodes, one had >50 episodes, and one had AF on ECG and refused further monitoring. Early results of minimally invasive surgery with a new extended linear lesion set suggest increased efficacy over PV isolation and limited ganglionated plexus ablation in patients with persistent AF or long-standing persistent AF. PMID:19959146

  4. Effects of a novel cholinergic M1 agonist, AF102B, on ambulation and water drinking behavior in rats.

    PubMed

    Togashi, H; Matsumoto, M; Yoshioka, M; Saito, Y; Saito, H

    1991-01-01

    Effects of a novel M1 agonist, AF102B (cis-2-methylspiro(1,3-oxathiolane-5,3')quinuclidine HCl), on ambulation and water drinking behavior were examined using an Ambulo-Drinkometer. AF64A-treated rats, an animal model for senile dementia of the Alzheimer type (SDAT), and non-treated control rats were used. AF102B was administered orally via tap water at a concentration of 0.01% and 0.1% for an experimental therapeutic dose and a supramaximal dose, respectively. Four-week administration of 0.01% AF102B did not affect either ambulatory activity or water drinking activity in non-treated rats. Successive 0.1% AF102B administration for 4 weeks produced a significant decrease in drinking activity as compared with non-treated control rats. In AF64A-treated rats, AF102B did not change the cholinotoxin AF64A-induced high activity in ambulation. However, a decrease in water drinking activity was observed after 0.1% AF102B administration, as in non-treated rats. These results suggest that therapeutic dose of AF102B do not produce any changes in the spontaneous moter activity and water drinking behavior in normal rats or the animal model for SDAT. Several investigators reported that AF102B (FSK-508; cis-2-methylspiro (1,3-oxathiolane-5,3') quinuclidine HCl) had the property of a relatively specific muscarinic agonist of the M1-type This novel M1 agonist, AF102B, also exerted and ameliorating effect on experimental amnesia; in a T-maze, radial-arm maze task and passive avoidance tasks. AF102B improves the cognitive impairment in various animal models for memory disorders including senile dementia of the Alzheimer type (SDAT). Based on these observations, AF102B has been proposed for the treatment of SDAT.(ABSTRACT TRUNCATED AT 250 WORDS)

  5. Level II scour analysis for Bridge 34 (HUNTTH00210034) on Town Highway 21, crossing Brush Brook, Huntington, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.; Ivanoff, Michael A.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure HUNTTH00210034 on Town Highway 21 crossing Brush Brook, Huntington, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in central Vermont. The 6.23-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest. In the study area, Brush Brook has an incised, straight channel with a slope of approximately 0.03 ft/ft, an average channel top width of 43 ft and an average bank height of 4 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 90.0 mm (0.295 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 26, 1996, indicated that the reach was stable. The Town Highway 21 crossing of Brush Brook is a 28-ft-long, one-lane bridge consisting of one 26-foot steel-beam span with a timber deck (Vermont Agency of Transportation, written communication November 30, 1995). The opening length of the structure parallel to the bridge face is 25.4 ft. The bridge is supported by vertical, concrete abutments with a wingwall on the upstream right. The channel is skewed approximately 5 degrees to the opening and the computed opening-skew-to-roadway is 5 degrees. A tributary enters Brush Brook on the right bank immediately downstream of the bridge. At the confluence, the

  6. Facilitation of memory storage by the acetylcholine M2 muscarinic receptor antagonist AF-DX 116.

    PubMed

    Baratti, C M; Opezzo, J W; Kopf, S R

    1993-07-01

    Post-training administration of the acetylcholine muscarinic M2 presynaptic receptor antagonist AF-DX 116 (0.1-10.0 mg/kg, ip), facilitated 48 h retention, in male Swiss mice, of a one-trial step-through inhibitory avoidance task. The dose-response curve was an inverted U. AF-DX 116 did not increase the retention latencies of mice that had not received a footshock during training. The influence of AF-DX 116 (1 mg/kg, ip) on retention was time-dependent, which suggests that the drug facilitated memory storage. The memory facilitation induced by AF-DX 116 (1 mg/kg, ip) was prevented by atropine (0.5 mg/kg, ip) administered after training, but 10 min prior to AF-DX 116 treatment. In contrast, neither methylatropine (0.5 mg/kg, ip), a peripherally acting muscarinic receptor blocker, nor mecamylamine (5 mg/kg, ip) or hexamethonium (5 mg/kg, ip), two cholinergic nicotinic receptor antagonists, prevented the effects of post-training AF-DX 116 on retention. Low subeffective doses of the central acting anticholinesterase physostigmine (35 micrograms/kg, ip), administered immediately after training, and AF-DX 116 (0.1 mg/kg, ip), given 10 min after training, acted synergistically to improve retention. The effects of AF-DX 116 (0.1 mg/kg, ip) were not influenced by the peripherally acting anticholinesterase neostigmine (35 micrograms/kg, ip). Considered together, these findings suggest that the activation of a muscarinic cholinergic presynaptic inhibitory mechanism, probably by increasing brain acetylcholine release, may modulate the activity of post-training processes involved in memory storage. PMID:8216161

  7. Facilitation of memory storage by the acetylcholine M2 muscarinic receptor antagonist AF-DX 116.

    PubMed

    Baratti, C M; Opezzo, J W; Kopf, S R

    1993-07-01

    Post-training administration of the acetylcholine muscarinic M2 presynaptic receptor antagonist AF-DX 116 (0.1-10.0 mg/kg, ip), facilitated 48 h retention, in male Swiss mice, of a one-trial step-through inhibitory avoidance task. The dose-response curve was an inverted U. AF-DX 116 did not increase the retention latencies of mice that had not received a footshock during training. The influence of AF-DX 116 (1 mg/kg, ip) on retention was time-dependent, which suggests that the drug facilitated memory storage. The memory facilitation induced by AF-DX 116 (1 mg/kg, ip) was prevented by atropine (0.5 mg/kg, ip) administered after training, but 10 min prior to AF-DX 116 treatment. In contrast, neither methylatropine (0.5 mg/kg, ip), a peripherally acting muscarinic receptor blocker, nor mecamylamine (5 mg/kg, ip) or hexamethonium (5 mg/kg, ip), two cholinergic nicotinic receptor antagonists, prevented the effects of post-training AF-DX 116 on retention. Low subeffective doses of the central acting anticholinesterase physostigmine (35 micrograms/kg, ip), administered immediately after training, and AF-DX 116 (0.1 mg/kg, ip), given 10 min after training, acted synergistically to improve retention. The effects of AF-DX 116 (0.1 mg/kg, ip) were not influenced by the peripherally acting anticholinesterase neostigmine (35 micrograms/kg, ip). Considered together, these findings suggest that the activation of a muscarinic cholinergic presynaptic inhibitory mechanism, probably by increasing brain acetylcholine release, may modulate the activity of post-training processes involved in memory storage.

  8. Oxygen tolerance capacity of upflow anaerobic solid-state (UASS) with anaerobic filter (AF) system.

    PubMed

    Meng, Yao; Jost, Carsten; Mumme, Jan; Wang, Kaijun; Linke, Bernd

    2016-07-01

    In order to investigate the oxygen tolerance capacity of upflow anaerobic solid-state (UASS) with anaerobic filter (AF) system, the effect of microaeration on thermophilic anaerobic digestion of maize straw was investigated under batch conditions and in the UASS with AF system. Aeration intensities of 0-431mL O2/gvs were conducted as pretreatment under batch conditions. Aeration pretreatment obviously enhanced anaerobic digestion and an aeration intensity of 431mL O2/gvs increased the methane yield by 82.2%. Aeration intensities of 0-355mL O2/gvs were conducted in the process liquor circulation of the UASS with AF system. Dissolved oxygen (DO) of UASS and AF reactors kept around 1.39±0.27 and 0.99±0.38mg/L, respectively. pH was relatively stable around 7.11±0.04. Volatile fatty acids and soluble chemical oxygen demand concentration in UASS reactor were higher than those in AF reactor. Methane yield of the whole system was almost stable at 85±7mL/gvs as aeration intensity increased step by step. The UASS with AF system showed good oxygen tolerance capacity.

  9. Oxygen tolerance capacity of upflow anaerobic solid-state (UASS) with anaerobic filter (AF) system.

    PubMed

    Meng, Yao; Jost, Carsten; Mumme, Jan; Wang, Kaijun; Linke, Bernd

    2016-07-01

    In order to investigate the oxygen tolerance capacity of upflow anaerobic solid-state (UASS) with anaerobic filter (AF) system, the effect of microaeration on thermophilic anaerobic digestion of maize straw was investigated under batch conditions and in the UASS with AF system. Aeration intensities of 0-431mL O2/gvs were conducted as pretreatment under batch conditions. Aeration pretreatment obviously enhanced anaerobic digestion and an aeration intensity of 431mL O2/gvs increased the methane yield by 82.2%. Aeration intensities of 0-355mL O2/gvs were conducted in the process liquor circulation of the UASS with AF system. Dissolved oxygen (DO) of UASS and AF reactors kept around 1.39±0.27 and 0.99±0.38mg/L, respectively. pH was relatively stable around 7.11±0.04. Volatile fatty acids and soluble chemical oxygen demand concentration in UASS reactor were higher than those in AF reactor. Methane yield of the whole system was almost stable at 85±7mL/gvs as aeration intensity increased step by step. The UASS with AF system showed good oxygen tolerance capacity. PMID:27372134

  10. Physical, chemical, and isotopic data from groundwater in the watershed of Mirror Lake, and in the vicinity of Hubbard Brook, near West Thornton, New Hampshire, 1983 to 1997

    USGS Publications Warehouse

    LaBaugh, James W.; Harte, Philip T.; Shapiro, Allen M.; Hsieh, Paul A.; Johnson, Carole D.; Goode, Daniel J.; Wood, Warren W.; Buso, Donald C.; Likens, Gene E.; Winter, Thomas C.

    2013-01-01

    Research on the hydrogeologic setting of Mirror Lake near West Thornton, New Hampshire (43° 56.5’ N, 71° 41.5’ W), includes the study of the physical, chemical, and isotopic characteristics of groundwater in the vicinity of the lake and nearby Hubbard Brook. Presented here are those physical, chemical, and isotopic data for the period 1983 to 1997. Data were collected from observation wells installed in glacial drift and bedrock, as well as from one domestic well in the general area of the lake and Hubbard Brook. Also presented are data for Mirror Lake for August 1, 1993, to place groundwater data in context with chemical and isotopic characteristics of the lake.

  11. A Qualitative Analysis of a "Bora-Brook Rearrangement": The Ambident Reactivity of Boryl-Substituted Alkoxide Including the Carbon-to-Oxygen Migration of a Boryl Group.

    PubMed

    Kisu, Haruki; Sakaino, Hirotoshi; Ito, Fumihiro; Yamashita, Makoto; Nozaki, Kyoko

    2016-03-16

    A bora-Brook rearrangement, i.e., the migration of boryl group from a carbon to an oxygen atom in an isolated α-boryl-substituted alkoxide, was examined, and decisive factors for the acceleration of this reaction are disclosed. In this rearrangement, the boryl-substituted alkoxide exhibited ambiphilic reactivity toward electrophiles to afford two types of products, which are electrophiles bound either at the oxygen or at the carbon atom. Using polar solvents, a saturated backbone of the boron-containing heterocycle, or larger alkali metal cations resulted in a significantly increased reaction rate of base-catalyzed isomerization of α-borylbenzyl alcohol including the bora-Brook rearrangement. PMID:26907676

  12. Brønsted base-catalyzed three-component coupling reaction of α-ketoesters, imines, and diethyl phosphite utilizing [1,2]-phospha-Brook rearrangement.

    PubMed

    Kondoh, Azusa; Terada, Masahiro

    2016-05-18

    A three-component coupling reaction of α-ketoesters, imines, and diethyl phosphite under Brønsted base catalysis was developed by utilizing the [1,2]-phospha-Brook rearrangement. The reaction involves the generation of ester enolates via the umpolung process, i.e., the chemoselective addition of diethyl phosphite to α-ketoesters followed by the [1,2]-phospha-Brook rearrangement, and the trapping of the resulting enolates by imines preferentially over α-ketoesters and protons. This operationally simple reaction can provide densely functionalized β-amino acid derivatives including an oxygen functionality at the α-position in good yields. The diastereoselectivity is highly dependent on the substrates and reaction temperature, which is attributed to the reversibility of the addition of the ester enolates to the imines. The methodology was further extended to the reaction of α-ketoesters, β-nitrostyrenes, and diethyl phosphite.

  13. Simulation of groundwater flow and streamflow depletion in the Branch Brook, Merriland River, and parts of the Mousam River watersheds in southern Maine

    USGS Publications Warehouse

    Nielsen, Martha G.; Locke, Daniel B.

    2015-01-01

    The study evaluated two different methods of calculating in-stream flow requirements for Branch Brook and the Merriland River—a set of statewide equations used to calculate monthly median flows and the MOVE.1 record-extension technique used on site-specific streamflow measurements. The August median in-stream flow requirement in the Merriland River was calculated as 7.18 ft3/s using the statewide equations but was 3.07 ft3/s using the MOVE.1 analysis. In Branch Brook, the August median in-stream flow requirements were calculated as 20.3 ft3/s using the statewide equations and 11.8 ft3/s using the MOVE.1 analysis. In each case, using site-specific data yields an estimate of in-stream flow that is much lower than an estimate the statewide equations provide.

  14. 2006 AFS. Separations processes for the power generation industry

    SciTech Connect

    2006-07-01

    The presentations (viewgraph/overheads) or papers discussed separations processes for the power industry under the following subject headings: nuclear, advanced energy and pollution, control systems, FGD, hot gas filtration, air pollution, electrostatic precipitators for particulate removal, filter media, CO{sub 2} capture, advances in filter design and operation, water utilization and treatment and arsenic, and advances in filtration and separation.

  15. In the footsteps of Robert Marshall: Proposed research of white spruce growth and movement at the tree limit, central Brooks Range, Alaska

    SciTech Connect

    Droessler, T.D.

    1992-03-01

    The proposed research will quantify white spruce growth and document its latitudinal stability at the tree limit in the central Brooks Range over the life span of the living trees. The goal is to link tree growth and tree position to summer temperature and precipitation. Historical records from 1929 to 1938 from work by Robert Marshall have been used to identify tree limit sites and provide information to interpret the present location of the tree limit.

  16. Depositional framework and regional correlation of pre-Carboniferous metacarbonate rocks of the Snowden Mountain area, central Brooks Range, Northern Alaska

    USGS Publications Warehouse

    Dumoulin, J.A.; Harris, A.G.

    1994-01-01

    This report describes lithofacies, conodont biostratigraphy and biofacies, and depositional environments of Proterozoic(?) through Devonian metacarbonate rocks in the Snowden Mountain area. These rocks are correlated with successions on the Seward Peninsula and across the Brooks Range. Lithologic and paleobiogeographic data suggest that these successions formed along a single continental margin which had faunal exchange with both North America and Siberia, rather than on a series of discrete platforms juxtaposed by later tectonic events.

  17. Grade-2 Teflon (AF1601) PCF for optical communication using 2D FDTD technique: a simplest design

    NASA Astrophysics Data System (ADS)

    Muduli, N.; Achary, J. S. N.; Padhy, Hemanta ku.

    2016-04-01

    A nonlinear ytterbium-doped rectangular proposed PCF structure of inner and outer cladding is used to analyze effective mode field area (Aeff), nonlinear coefficient (γ), dispersion (D), and confinement loss (CL) in a wide range of wavelength. The fabrication of PCF structure is due to different size doped air hole, pitch, and air hole diameter in a regular periodic geometrical array fashion. The various property of PCF structure such as mode field area, nonlinear coefficient, dispersion, and confinement loss are analyzed by implementing 2D FDTD technique. The above PCF property investigated using suitable parameters like Λ1, ?, ?, and ? in three different situations is discussed in simulation. The high nonlinear coefficient and dispersion property of PCF structure are tailored by setting the cladding parameter. However, highly nonlinear fibers with nonzero dispersion at the wavelength of 1.55 μm are very attractive for a range of optical communication application such as laser amplifier, pulse compression, wavelength conversion, all optical switching, and supercontinuum generation. So our newly proposed ytterbium-doped PCF seems to be most suitable exclusively for supercontinuum generation and nonlinear fiber optics. Finally, it is observed that ytterbium-doped Teflon (AF1601) PCF has more nonlinear coefficient (γ(λ) = 65.27 W-1 km-1) as compared to pure silica PCF (γ(λ) = 52 W-1 km-1) design to have same mode field area (Aeff) 1.7 μm2 at an operating wavelength of 1.55 μm.

  18. Comparison of CO2 trapping in highly heterogeneous reservoirs with Brooks-Corey and van Genuchten capillary pressure curves

    NASA Astrophysics Data System (ADS)

    Gershenzon, Naum; Soltanian, Mohamadreza; Ritzi, Robert, Jr.; Dominic, David

    2015-04-01

    Geological heterogeneities essentially affect the dynamics of a CO2 plume in subsurface environments. Recent studies have led to new conceptual and quantitative models for sedimentary architecture in fluvial deposits over a range of scales that are relevant to the performance of some deep saline reservoirs [1, 2]. Previously we showed how the dynamics of a CO2 plume, during and after injection, is influenced by the hierarchical and multi-scale stratal architecture in such reservoirs [3]. The results strongly suggest that representing these small scales (few cm in vertical direction and few meters in horizontal direction) features and representing how they are organized within a hierarchy of larger-scale features, is critical to understanding capillary trapping processes. The results also demonstrated the importance of using separate capillary pressure and relative permeability relationships for different textural facies types. Here we present the result of simulation of CO2 trapping in deep saline aquifers using two different conventional approaches, i.e. Brooks-Corey and van Genuchten, to capillary pressure. We showed that capillary trapping as well as dissolution rates are very different for the Brooks-Corey and van Genuchten approaches if reservoir consists from various species with different capillary pressure and relative permeability curves. We also found a dramatic difference in simulation time; using the van Genuchten approach improves convergence and thus reduces calculation time by one-two orders of magnitude. [1] Bridge, J.S. (2006), Fluvial facies models: Recent developments, in Facies Models Revisited, SEPM Spec. Publ., 84, edited by H. W. Posamentier and R. G. Walker, pp. 85-170, Soc. for Sediment. Geol. (SEPM), Tulsa, Okla [2] Ramanathan, R., A. Guin, R.W. Ritzi, D.F. Dominic, V.L. Freedman, T.D. Scheibe, and I.A. Lunt (2010), Simulating the heterogeneity in channel belt deposits: Part 1. A geometric-based methodology and code, Water Resources

  19. Quarantine of Aeromonas salmonicida-harboring ebonyshell mussels (Fusconaia ebena) prevents transmission of the pathogen to brook trout (Salvelinus fontinalis)

    USGS Publications Warehouse

    Starliper, C.E.

    2005-01-01

    Furunculosis, caused by the bacterium Aeromonas salmonicida, was artificially induced in brook trout (Salvelinus fontinalis) in an experimental tank. Ebonyshells (Fusconaia ebena) were placed to cohabit with these fish to acquire the pathogen through siphoning. After 2 wk of cohabitation, 10 of the mussels were assayed by bacterial culture and all were found to harbor A. salmonicida. The mean cell count from soft tissue homogenates was 1.84 ?? 105 cfu/g, which comprised an average 14.41% of the total bacteria isolated from tissues. From the fluids, a mean of 2.84 ?? 105 A. salmonicida cfu/mL was isolated, which comprised an average of 17.29% of the total bacterial flora. The mussels were removed from the cohabitation tank and distributed equally among five previously disinfected tanks, 35 per tank. The F. ebena in each tank were allowed to depurate A. salmonicida for various durations: 1, 5, 10, 15 or 30 days. After each group had depurated for their assigned time, 10 were assayed for bacteria, tank water was tested, and 20 pathogen-free bioindicator brook trout were added to cohabit with the remaining mussels. Depuration was considered successful if A. salmonicida was not isolated from tank water or the mussels, and there was no infection or mortality to bioindicator fish. After 1 day of depuration, A. salmonicida was not isolated from the soft tissues; however, it was isolated from one of the paired fluids (10% prevalence). The tank water tested positive, and the bioindicator fish became infected and died. From the 5-day depuration group, A. salmonicida was not isolated from soft tissues, but was isolated from three fluids (30%; mean = 1.56 ?? 102 cfu/mL). Tank water from the 5-day group was negative, and there was no mortality among the bioindicator fish. However, A. salmonicida was isolated from 2 of 20 fish at the end of the 14-day observation period. One F. ebena fluid sample was positive for A. salmonicida from the 10-day depuration group, but none of the

  20. Frozen debris lobes, permafrost slope instability, and a potential infrastructure hazard in the south-central Brooks Range of Alaska

    NASA Astrophysics Data System (ADS)

    Daanen, R. P.; Darrow, M.; Grosse, G.; Jones, B. M.

    2012-12-01

    Here we report on investigations carried out at unusual debris mass-movement features (frozen debris lobes) on permafrost slopes in the south central portion of the Brooks Range of northern Alaska. The features under investigation are located in mountainous terrain near the southern border of continuous permafrost. The frozen debris lobes consist mainly of boulders, cobles, platy gravel sand and silt frozen debris derived from weathering mountain tops. The general dimensions of these lobes are either lobate or tongue shaped with widths up to 500 m and lengths up to 1200 m. In accumulation zones where slopes converge, the debris slowly moves as solifluction lobes, mud flows and potentially sliding toward the valley. These features were previously referred to as stable rock glaciers in the past, as evidenced by a dense cover of vegetation, and exhibiting no known downslope movement. Our investigations however, have shown that these features are indeed moving downslope as a result of creep, slumping, viscous flow, blockfall and leaching of fines in the summer; and in cold seasons by creep and sliding of frozen sediment slabs. Movement indicators observed in the field include toppling trees, slumps and scarps, detachment slides, striation marks on frozen sediment slabs, recently buried trees and other vegetation, mudflows, and large cracks in the lobe surface. Ground-based measurements on one frozen debris-lobe over three years (2008-2010) revealed average movement rates of approximately 1 cm day-1, which is substantially larger than rates measured in historic aerial photography from the 1950s to 1980s. Current observations , through lidar, ifsar, insar and ground based measurements using boreholes, geophysics and repeat photography of these features show an increase in movement activity that could be the result of rising summer temperatures in the region. Warming of ice rich permafrost slopes and frozen debris lobes in the Brooks Range pose a direct threat to the

  1. Stream acidification and mortality of brook trout (Salvelinus fontinalis) in response to timber harvest in Catskill Mountain watersheds, New York, USA

    USGS Publications Warehouse

    Baldigo, Barry P.; Murdoch, Peter S.; Burns, Douglas A.

    2005-01-01

    Effects of clear-cut and timber-stand improvement (TSI) harvests on water chemistry and mortality of caged brook trout (Salvelinus fontinalis) were evaluated in a study of three Catskill Mountain streams, 1994-2000. Harvests removed 73% of tree basal area (BA) from a clearcut subbasin, 5% BA from a TSI subbasin, and 14% BA at a site below the confluence of both streams. A fourth nonharvested site served as a control. Water quality and trout mortality were affected only in the clearcut stream. Acidity and concentrations of nitrate and inorganic monomeric aluminum (Alim) increased sharply during high flows after the first growing season (fall 1997). Acid-Alim episodes were severe during this period and decreased steadily in magnitude and duration thereafter. All trout at this site died within 7 days during spring 1998 and 85% died during spring 1999. Only background mortality was observed in other years at this site and at the other three sites during all tests. The absence of mortality in TSI watersheds indicates that limited harvests should not harm brook trout populations in acid-sensitive streams. Effects of tree harvests on fish communities are of concern, however, because many stream-dwelling species are more sensitive to acidified waters than brook trout. ?? 2005 NRC.

  2. Thermal stratification of Dilute Lakes. Evaluation of regulatory processes and biological effects before and after base addition: Effects on brook trout habitat and growth. Technical report series

    SciTech Connect

    Schofield, C.L.; Josephson, D.; Keleher, C.; Gloss, S.P.

    1993-04-01

    The authors address the significance of changes in summer thermal stratification patterns of Adirondack lakes affected by acidification to cold-water fish populations inhabiting these sensitive lakes. The brook trout (Salvelinus fontinalis) is the primary cold-water fish species indigenous to acid-sensitive lakes in the Adirondack region of northern New York State; the ability of these lakes to sustain this important sport species is highly dependent on the availability of adequate summer habitat, consisting of cool, well-oxygenated water. The authors hypothesized that acidification-induced reductions in the thermal stability of sensitive Adirondack lakes could lead to degradation of potential brook trout habitat. These hypotheses were addressed in the study by utilizing data available from previous lake liming studies in the Adirondack region, brook trout growth data from management studies in the region, and the extensive Adirondack Lake Survey Corporation (ALSC) data base. More than 70% of the small, shallow ALSC lakes were classified as predominantly weakly stratified systems that would be potentially sensitive to changes in thermal stratification status resulting from relatively small changes in color and transparency.

  3. Detrital blueschist-Facies metamorphic mineral assemblages in Early Cretaceous sediments of the foreland basin of the Brooks Range, Alaska, and implications for orogenic evolution

    NASA Astrophysics Data System (ADS)

    Till, Alison B.

    1992-12-01

    Detrital metamorphic minerals found in the foreland basin of the Brooks Range were derived from blueschist-facies rocks that now occupy the range's metamorphic core. The metamorphic minerals occur in the Torok Formation and the Nanushuk Group; they are contained in sediments at least as old as middle Albian in age, and may have arrived earlier. The source of the minerals is the blueschist-facies schist belt, the structurally highest, more internal of two structurally and metamorphically distinct belts that occupy the metamorphic core of the Brooks Range. The blueschist facies rocks of the schist belt were exhumed between Late Jurassic and middle Albian time, during the major pulse of contractional deformation in the Brooks Range orogeny, rather than during late stage extensional collapse or postcontractional isostatic rebound, as suggested by other workers. The processes by which the blueschist-facies rocks were uplifted and denuded must have operated during contractional tectonism. Post peak metamorphic structures in the blueschist-facies rocks support their uplift by thrust systems; their unroofing apparently occurred by erosion and possibly by small-scale extensional faulting.

  4. An integrated model for the tectonic development of the frontal Brooks Range and Colville Basin 250 km west of the Trans-Alaska Crustal Transect

    USGS Publications Warehouse

    Cole, F.; Bird, K.J.; Toro, J.; Roure, F.; O'Sullivan, P. B.; Pawlewicz, M.; Howell, D.G.

    1997-01-01

    We present a kinematic model for the sequence of deformation and sedimentation in the frontal Brooks Range and adjacent Colville Basin in the Etivluk River region, 250 km west of the Trans-Alaska Crustal Transect (TACT). The model is based on a tectonic subsidence analysis of the foreland basin, combined with structural, stratigraphic, and thermal studies of the northern edge of the Brooks Range thrust belt. We interpret six discrete tectonic events that led to the present-day configuration of the thrust belt in this area: (1) emplacement of ophiolitic allochthons over the distal continental margin rocks in Valanginian time, hundreds of kilometers south of this study, (2) Hauterivian uplift of the Barrow Arch rift margin, affecting the northern part of the Colville Basin, (3) Barremian contraction involving emplacement of distal continental margin and ophiolitic allochthons onto the Endicott Mountains allochthon and creation of a southward dipping flexural basin on the North Slope autochthon, (4) mid-Cretaceous exhumation of imbricated rocks in the Brooks Range during northward propagation of the thrust front into the foreland, (5) minor thrusting in Late Cretaceous-Paleocene in the northern foreland to the northern limit of contractional structures, and (6) regional exhumation of the orogen and the foreland in Paleocene-Eocene time. This sequence of deformation agrees well with a simple model of a forward propagating thrust system. Copyright 1997 by the American Geophysical Union.

  5. AF-6 is a positive modulator of the PINK1/parkin pathway and is deficient in Parkinson's disease

    PubMed Central

    Haskin, Joseph; Szargel, Raymonde; Shani, Vered; Mekies, Lucy N.; Rott, Ruth; Lim, Grace G. Y.; Lim, Kah-Leong; Bandopadhyay, Rina; Wolosker, Herman; Engelender, Simone

    2013-01-01

    Parkin E3 ubiquitin-ligase activity and its role in mitochondria homeostasis are thought to play a role in Parkinson's disease (PD). We now report that AF-6 is a novel parkin interacting protein that modulates parkin ubiquitin-ligase activity and mitochondrial roles. Parkin interacts with the AF-6 PDZ region through its C-terminus. This leads to ubiquitination of cytosolic AF-6 and its degradation by the proteasome. On the other hand, endogenous AF-6 robustly increases parkin translocation and ubiquitin-ligase activity at the mitochondria. Mitochondrial AF-6 is not a parkin substrate, but rather co-localizes with parkin and enhances mitochondria degradation through PINK1/parkin-mediated mitophagy. On the other hand, several parkin and PINK1 juvenile disease-mutants are insensitive to AF-6 effects. AF-6 is present in Lewy bodies and its soluble levels are strikingly decreased in the caudate/putamen and substantia nigra of sporadic PD patients, suggesting that decreased AF-6 levels may contribute to the accumulation of dysfunctional mitochondria in the disease. The identification of AF-6 as a positive modulator of parkin translocation to the mitochondria sheds light on the mechanisms involved in PD and underscores AF-6 as a novel target for future therapeutics. PMID:23393160

  6. Statin Therapy for the Prevention of Atrial Fibrillation Trial (SToP AF trial)

    PubMed Central

    Negi, Smita; Shukrullah, Irfan; Veledar, Emir; Bloom, Heather L.; Jones, Dean P.; Dudley, Samuel C.

    2010-01-01

    Background Inflammation and oxidative stress are associated with atrial fibrillation (AF). Statins have antioxidant and anti-inflammatory properties. We tested if atorvastatin reduced AF recurrence after DC cardioversion (CV) by modifying systemic oxidative stress and inflammation. (NCT00252967) Methods and Results In a randomized, double-blinded, placebo-controlled trial, patients with atrial fibrillation/flutter (AF) were randomized to receive either atorvastatin 80 mg (n=33) or placebo (n=31) before CV. Treatment was continued for 12 months or until AF recurred. Serum oxidative stress markers (ratios of oxidized to reduced glutathione and cysteine, derivatives of reactive oxygen species, isoprostanes) and inflammatory markers [ high sensitivity C- reactive protein (hs-CRP), interleukin-6 (IL-6), interleukin-1β(IL-1β), tumor necrosis factor-α (TNFα)] were measured at baseline and on follow-up. AF recurred in 22 (66.7%) of atorvastatin and 26 (83.9%) of placebo group (p=0.2). The adjusted hazard ratio of having recurrence on atorvastatin versus on placebo was 0.99 (95% CI: 0.98-1.01, p=0.3). There was no significant difference in the time to recurrence using Kaplan-Meier survival estimates (median (IR): 29 (2-145) days vs. 22 (7-70) days, p=0.9). While no significant effect was seen on oxidative stress, 2 of 4 inflammatory markers, IL-6 (adjusted OR: 0.59, 95% CI: 0.35-0.97, p= 0.04) and hs-CRP (adjusted OR: 0.59, 95% CI: 0.37-0.95, p=0.03) were significantly lowered with atorvastatin. Cholesterol levels significantly decreased with atorvastatin (p=0.03). Conclusions High dose atorvastatin did not reduce the recurrence of AF after CV. It reduced selective markers of inflammation without affecting systemic oxidative stress. Failure of atorvastatin to prevent AF recurrence may be due to its failure to affect oxidative stress. PMID:20946227

  7. Air Pollution.

    ERIC Educational Resources Information Center

    Fox, Donald L.

    1989-01-01

    Materials related to air pollution are reviewed for the period January 1987, to October 1988. The topics are pollution monitoring, air pollution, and environmental chemistry. The organization consists of two major analytical divisions: (1) gaseous methods; and (2) aerosol and particulate methods. (MVL)

  8. Air Pollution.

    EPA Science Inventory

    Air quality is affected by many types of pollutants that are emitted from various sources, including stationary and mobile. These sources release both criteria and hazardous air pollutants, which cause health effects, ecological harm, and material damage. They are generally categ...

  9. Contributions of separate reactions to the acid-base buffering of soils in brook floodplains (Central Forest State Reserve)

    NASA Astrophysics Data System (ADS)

    Sokolova, T. A.; Tolpeshta, I. I.; Rusakova, E. S.

    2016-04-01

    The acid-base buffering of gleyic gray-humus soils developed in brook floodplains and undisturbed southern-taiga landscapes has been characterized by the continuous potentiometric titration of soil water suspensions. During the interaction with an acid, the major amount of protons (>80%) is consumed for the displacement of exchangeable bases and the dissolution of Ca oxalates. In the O and AY horizons, Mn compounds make the major contribution (2-15%) to the acid buffering. The buffer reactions with the participation of Al compounds make up from 0.5 to 1-2% of the total buffering capacity, and the protonation of the surface OH groups of kaolinite consumes 2-3% of the total buffering capacity. The deprotonation of OH groups on the surface of Fe hydroxides (9-43%), the deprotonation of OH groups on the surface of illite crystals (3-19%), and the dissolution of unidentified aluminosilicates (9-14%) are the most significant buffer reactions whose contributions have been quantified during the interaction with a base. The contribution of the deprotonation of OH groups on the surface of kaolinite particles is lower (1-5%) because of the small specific surface area of this mineral, and that of the dissolution of Fe compounds is insignificant. In the AY horizon, the acid and base buffering of soil in the rhizosphere is higher than beyond the rhizosphere because of the higher contents of organic matter and nonsilicate Fe and Al compounds.

  10. Level II scour analysis for Bridge 42 (BRIDTH00040042) on Town Highway 04, crossing Dailey Hollow Brook, Bridgewater, Vermont

    USGS Publications Warehouse

    Olson, Scott A.; Weber, Matthew A.

    1996-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure BRIDTH00040042 on town highway 4 crossing Dailey Hollow Brook, Bridgewater, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). A Level I study is included in Appendix E of this report. A Level I study provides a qualitative geomorphic characterization of the study site. Information on the bridge available from VTAOT files was compiled prior to conducting Level I and Level II analyses and can be found in Appendix D. The site is in the Green Mountain physiographic division of central Vermont in the town of Bridgewater. The 2.20-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the overbanks are covered by shrubs and trees except for the upstream right overbank where there is a house. Dailey Hollow Brook enters Dailey Hollow Branch at the downstream face of the bridge. In the study area, Dailey Hollow Brook has an incised, sinuous channel with a slope of approximately 0.035 ft/ft. The channel top width and channel depth upstream of the bridge is 19 ft and 3 ft, respectively. Downstream of the bridge and the confluence the channel top width and channel depth is 39 ft and 2 ft respectively. The predominant channel bed material is cobble and gravel (D50 is 64.7 mm or 0.212 ft). The geomorphic assessment at the time of the Level I and Level II site visit on November 1, 1994, indicated that the reach was stable. The town highway 4 crossing of Dailey Hollow Brook is a 25-ft-long, one-lane bridge consisting of one 23-foot concrete span (Vermont Agency of Transportation, written communication, August 25, 1994). The bridge is supported by vertical, concrete abutments with wingwalls. Type-2 stone fill (less than 36 inches) exists along all four wingwalls, the downstream right road approach

  11. The impact of fishing-induced mortality on the evolution of alternative life-history tactics in brook charr

    PubMed Central

    Thériault, Véronique; Dunlop, Erin S; Dieckmann, Ulf; Bernatchez, Louis; Dodson, Julian J

    2008-01-01

    Although contemporary trends indicative of evolutionary change have been detected in the life-history traits of exploited populations, it is not known to what extent fishing influences the evolution of alternative life-history tactics in migratory species such as salmonids. Here, we build a model to predict the evolution of anadromy and residency in an exploited population of brook charr, Salvelinus fontinalis. Our model allows for both phenotypic plasticity and genetic change in the age and size at migration by including migration reaction norms. Using this model, we predict that fishing of anadromous individuals over the course of 100 years causes evolution in the migration reaction norm, resulting in a decrease in average probabilities of migration with increasing harvest rate. Moreover, we show that differences in natural mortalities in freshwater greatly influence the magnitude and rate of evolutionary change. The fishing-induced changes in migration predicted by our model alter population abundances and reproductive output and should be accounted for in the sustainable management of salmonids. PMID:25567640

  12. Copper binding affinity of rainbow trout (Oncorhynchus mykiss) and brook trout (Salvelinus fontinalis) gills: Implications for assessing bioavailable metal

    SciTech Connect

    MacRae, R.K.; Smith, D.E.; Swoboda-Colberg, N.; Meyer, J.S.; Bergman, H.L. . Dept. of Zoology and Physiology)

    1999-06-01

    In this study, the authors determined the conditional stability constant (log K[prime]) of copper for the gills of rainbow trout (Oncorhynchus mykiss; RBT) and brook trout (Salvelinus fontinalis; BT). Using toxicity-based complexation bioassays, which measure the effect of competing organic ligands on copper toxicity, the RBT gill copper log K[prime] range was 6.4 to 7.2. Using a Scatchard analysis of gill Cu accumulation, the RBT log K[prime] was 7.50 and the BT log K[prime] was 7.25. The close agreement in RBT log K[prime] values between these two methods suggests that measurement of gill copper accumulation is an acceptable alternative for determining a toxicity-based gill copper binding affinity. The results also suggest that there is either a single gill copper binding component or, more realistically, multiple components with similar binding properties that function collectively to define a single toxicologically relevant copper conditional stability constant. These results suggest analytical approaches to measuring bioavailable metal concentrations, such as geochemical modeling where biological ligands are included in speciation calculations, may adequately simulate complex biological ligands. A method to convert gill copper accumulation to a bioavailable water criterion is also discussed.

  13. Level II scour analysis for Bridge 24 (MANCUS00070024) on U.S. Route 7, crossing Lye Brook, Manchester, Vermont

    USGS Publications Warehouse

    Olson, Scott A.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure MANCUS00070024 on U.S. Route 7 crossing Lye Brook, Manchester, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Taconic section of the New England physiographic province in southwestern Vermont. The 8.13-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the primary surface cover consists of brush and trees. In the study area, Lye Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 66 ft and an average bank height of 11 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 90.0 mm (0.295 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 6, 1996, indicated that the reach was stable. Although, the immediate reach is considered stable, upstream of the bridge the Lye Brook valley is very steep (0.05 ft/ft). Extreme events in a valley this steep may quickly reveal the instability of the channel. In the Flood Insurance Study for the Town of Manchester (Federal Emergency Management Agency, January, 1985), Lye Brook’s overbanks were described as “boulder strewn” after the August 1976 flood. The U.S. Route 7 crossing of Lye Brook is a 28-ft-long, two-lane bridge consisting of one 25-foot concrete span (Vermont Agency of Transportation, written communication, September

  14. Flood Study of Warren Brook in Alstead and Cold River in Alstead, Langdon, and Walpole, New Hampshire, 2005

    USGS Publications Warehouse

    Flynn, Robert H.

    2006-01-01

    This report presents water-surface elevations and profiles as determined using the U.S. Army Corps of Engineers (USACE) one-dimensional Hydrologic Engineering Center River Analysis System, also known as HEC-RAS. Steady flow water-surface profiles were developed for two stream reaches: the Cold River from its confluence with the Connecticut River in Walpole, through Alstead to the McDermott Bridge in Langdon, NH, and Warren Brook from its confluence with the Cold River to Warren Lake in Alstead, NH. Flood events of a magnitude, which are expected to be equaled or exceeded once on the average during any 10-, 50-, 100-, or 500-year period (recurrence interval), were modeled using HEC-RAS as these flood events are recognized as being significant for flood-plain management, determination of flood insurance rates, and design of structures such as bridges and culverts. These flood events are referred to as the 10-, 50-, 100-, and 500-year floods and have a 10-, 2-, 1-, and 0.2-percent chance, respectively, of being equaled or exceeded during any year. The recurrence intervals represent the long-term average between floods of a specific magnitude. The risk of experiencing rare floods at short intervals or within the same year increases when periods greater than one year are considered. The analyses in this study reflect the flooding potentials based on conditions existing in the communities of Walpole, Alstead and Langdon at the time of completion of this study.

  15. Hatching, growth, ion accumulation, and skeletal ossification of brook trout (Salvelinus fontinalis) alevins in acidic soft waters

    USGS Publications Warehouse

    Steingraeber, M.T.; Gingerich, W.H.

    1991-01-01

    Brook trout eyed eggs and subsequent alevins were exposed to pH 5.0, 6.5, and 7.0 in soft reconstituted water and to pH 8.2 in hard well water for up to 72 d. Hatching was delayed and hatching success reduced (p K+ > Cl- during yolk absorption and early exogenous feeding. Whole-body monovalent ion concentrations were reduced for short periods during yolk absorption in alevins exposed to pH 6.5 and throughout most of the experiment for those exposed to pH 5.0. Whole-body Mg2+ concentrations were not affected by treatment pH and remained near their median hatch level throughout the exposure. The whole-body concentration of Ca2+ was reduced in fish exposed to pH 5.0, particularly near the end of the experiment. Calcium accumulation in fish was influenced by the interaction of pH and time at pH 5.0 but not at the other pH levels. Alevins exposed to pH 5.0 experienced delayed ossification of skeletal structures associated with feeding, respiration, and locomotion that usually persisted for up to 10 d. The detection of skeletal abnormalities early in life might aid in identifying fish populations at risk in acidified waters.

  16. Source, movement, and effects of nitrogen and phosphorus in three ponds in the headwaters of Hop Brook, Marlborough, Massachusetts

    USGS Publications Warehouse

    Briggs, John C.; Silvey, William D.

    1984-01-01

    The headwaters of Hop Brook near Marlborough, Massachusetts, contain a series of three in-line ponds--Hager Pond, Brist Millpond, and Carding Millpond--which receive over half of their surface-water inflow as effluent from the Marlborough Easterly Wastewater Treatment Plant. These ponds have a history of summer algal blooms and fish kills. Water entering these ponds contains quantities of nitrogen and phosphorus far higher than the levels known to promote excessive growth of aquatic vegetation. As the water moves through the three ponds, nitrogen levels decrease. Although some nitrogen is lost to the atmosphere by denitrification, the bulk of the nitrogen probably is retained in the pond sediments. There is a net decrease in phosphorus in the water leaving Carding Millpond compared to the water entering Hager Pond. However, during most sampling periods, the phosphorus concentration of water leaving Carding Millpond is still above the level known to cause excessive growth of aquatic vegetation in lakes. During certain summer periods, there appears to be release of some phosphorus from the sediments in Carding and Grist Millponds. No improvement in water quality of the three ponds can be expected until the concentrations of nutrients entering Hager Pond are reduced to levels that will not support excessive growth of aquatic vegetation. (USGS)

  17. Nature and time course of acclimation to aluminum in juvenile brook trout (Salvelinus fontinalis): II. Gill histology

    USGS Publications Warehouse

    Mueller, M.E.; Sanchez, D.A.; Bergman, H.L.; McDonald, D.G.; Rhem, R.G.; Wood, C.M.

    1991-01-01

    Gill samples from juvenile brook trout (Salvelinus fontinalis) acclimated to low-level aluminum at pH 5.2 showed severe damage by day 4, with necrosis and fusion of secondary lamellae and hyperplasia and hypertrophy of mucous cells. Over the following 20 d, there was a continual process of repair with proliferation and hypertrophy of mucous cells. Qualitative analysis of gill samples plus physiology and mortality data collected in a companion study indicated progressive development (by day 10 onward) of increasing acclimation to Al. Quantitative analysis of gill samples on day 13 showed that mucous cell volume density had tripled and mucous cell area had doubled in Al-exposed fish compared with control fish. A lamellar fusion index showed evidence of fusion in Al-exposed fish by day 4 with recovery to nearly control levels by day 13. Physiological disturbances appear to be directly related to the histological changes observed in the gill epithelium. At the cellular level, changes in either mucous cell production and secretion or changes in mucus chemistry contribute, in part, to acclimation to Al.

  18. Eleven-year response of foliar chemistry to chronic nitrogen and sulfur additions at the Bear Brooks Watershed in Maine

    SciTech Connect

    Jose Alexander Elvir; Gregory J. White

    2005-06-01

    The foliar chemistry of sugar maple (Acer saccharum Marsh.), American beech (Fagus grandifolia Ehrh.), and red spruce (Picea rubens Sarg.) was studied from 1993 to 2003 at the Bear Brook Watershed in Maine (BBWM). The BBWM is a paired-watershed forest ecosystem study, with one watershed treated bimonthly since 1989 with ammonium sulfate ((NH4)2SO4) at a rate of 25.2 kg N·ha–1·year–1. Foliar N concentrations were higher in all tree species within the treated watershed compared with trees within the reference watershed. Foliar Ca and Mg concentrations were lower in American beech and red spruce within the treated watershed. There were no significant differences in foliar K concentrations between watersheds. Foliar P and Mn concentration differences between watersheds were inconsistent among years. Differences in foliar N concentrations between watersheds declined over time in sugar maple but not in red spruce or American beech. Differences in foliar Ca and Mg concentrations between the treated and reference watersheds increased over time for American beech and red spruce, primarily because of a consistent decline in concentrations of these nutrients in trees within the treated watershed. No temporal trends in foliar Ca and Mg concentration differences between watersheds were observed for sugar maple.

  19. Why are the prevalence and diversity of helminths in the endemic Pyrenean brook newt Calotriton asper (Amphibia, Salamandridae) so low?

    PubMed

    Comas, M; Ribas, A

    2015-03-01

    A cornerstone in parasitology is why some species or populations are more parasitized than others. Here we examine the influence of host characteristics and habitat on parasite prevalence. We studied the helminths parasitizing the Pyrenean brook newt Calotriton asper (n= 167), paying special attention to the relationship between parasites and ecological factors such as habitat, sex, ontogeny, body size and age of the host. We detected two species of parasites, Megalobatrachonema terdentatum (Nematoda: Kathlaniidae) and Brachycoelium salamandrae (Trematoda: Brachycoeliidae), with a prevalence of 5.99% and 1.2%, respectively. Marginally significant differences were found in the prevalence between sexes, with females being more parasitized than males. The present results show significant differences in the body length of paedomorphic and metamorphic individuals, the former being smaller. Nevertheless, no significant correlations between parasite prevalence and either newt body length, ontogenetic stage or age were found. In comparison with other Salamandridae living in ponds, prevalence and diversity values were low. This may be due to a long hibernation period, the species' lotic habitat and its reophilous lifestyle, which probably do not allow for a high parasite load.

  20. Maintenance of phenotypic variation: Repeatability, heritability and size-dependent processes in a wild brook trout population

    USGS Publications Warehouse

    Letcher, B.H.; Coombs, J.A.; Nislow, K.H.

    2011-01-01

    Phenotypic variation in body size can result from within-cohort variation in birth dates, among-individual growth variation and size-selective processes. We explore the relative effects of these processes on the maintenance of wide observed body size variation in stream-dwelling brook trout (Salvelinus fontinalis). Based on the analyses of multiple recaptures of individual fish, it appears that size distributions are largely determined by the maintenance of early size variation. We found no evidence for size-dependent compensatory growth (which would reduce size variation) and found no indication that size-dependent survival substantially influenced body size distributions. Depensatory growth (faster growth by larger individuals) reinforced early size variation, but was relatively strong only during the first sampling interval (age-0, fall). Maternal decisions on the timing and location of spawning could have a major influence on early, and as our results suggest, later (>age-0) size distributions. If this is the case, our estimates of heritability of body size (body length=0.25) will be dominated by processes that generate and maintain early size differences. As a result, evolutionary responses to environmental change that are mediated by body size may be largely expressed via changes in the timing and location of reproduction. Published 2011. This article is a US Government work and is in the public domain in the USA.

  1. Strain specific genotype-environment interactions and evolutionary potential for body mass in brook charr (Salvelinus fontinalis).

    PubMed

    Crespel, Amélie; Bernatchez, Louis; Audet, Céline; Garant, Dany

    2013-03-01

    Discriminating between genetic and environmental causes of phenotypic variation is an essential requirement for understanding the evolutionary potential of populations. However, the extent to which genetic variation differs among conspecific groups and environments during ontogeny has rarely been investigated. In this study, the genetic basis of body mass was measured in three divergent strains of brook charr (Salvelinus fontinalis) in different rearing environments and at different time periods. The results indicate that body mass was a heritable trait in all strains but that the level of heritability greatly differed among strains. Moreover, heritability estimates of each strain varied differently according to environmental rearing conditions, and cross-environments correlations were all significantly lower than unity, indicating strain-specific patterns of genotype-environment interactions. Heritability estimates also varied throughout ontogeny and decreased by 50% from 9 to 21 months of age. This study highlights the divergence in genetic architecture and evolutionary potential among these strains and emphasizes the importance of considering the strain-specific potential of the response to selection according to environmental variation.

  2. TOPMODEL simulations of streamflow and depth to water table in Fishing Brook Watershed, New York, 2007-09

    USGS Publications Warehouse

    Nystrom, Elizabeth A.; Burns, Douglas A.

    2011-01-01

    TOPMODEL uses a topographic wetness index computed from surface-elevation data to simulate streamflow and subsurface-saturation state, represented by the saturation deficit. Depth to water table was computed from simulated saturation-deficit values using computed soil properties. In the Fishing Brook Watershed, TOPMODEL was calibrated to the natural logarithm of streamflow at the study area outlet and depth to water table at Sixmile Wetland using a combined multiple-objective function. Runoff and depth to water table responded differently to some of the model parameters, and the combined multiple-objective function balanced the goodness-of-fit of the model realizations with respect to these parameters. Results show that TOPMODEL reasonably simulated runoff and depth to water table during the study period. The simulated runoff had a Nash-Sutcliffe efficiency of 0.738, but the model underpredicted total runoff by 14 percent. Depth to water table computed from simulated saturation-deficit values matched observed water-table depth moderately well; the root mean squared error of absolute depth to water table was 91 millimeters (mm), compared to the mean observed depth to water table of 205 mm. The correlation coefficient for temporal depth-to-water-table fluctuations was 0.624. The variability of the TOPMODEL simulations was assessed using prediction intervals grouped using the combined multiple-objective function. The calibrated TOPMODEL results for the entire study area were applied to several subwatersheds within the study area using computed hydrogeomorphic properties of the subwatersheds.

  3. Level II scour analysis for Bridge 24 (MANCUS00070024) on U.S. Route 7, crossing Lye Brook, Manchester, Vermont

    USGS Publications Warehouse

    Olson, Scott A.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure MANCUS00070024 on U.S. Route 7 crossing Lye Brook, Manchester, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Taconic section of the New England physiographic province in southwestern Vermont. The 8.13-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the primary surface cover consists of brush and trees. In the study area, Lye Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 66 ft and an average bank height of 11 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 90.0 mm (0.295 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 6, 1996, indicated that the reach was stable. Although, the immediate reach is considered stable, upstream of the bridge the Lye Brook valley is very steep (0.05 ft/ft). Extreme events in a valley this steep may quickly reveal the instability of the channel. In the Flood Insurance Study for the Town of Manchester (Federal Emergency Management Agency, January, 1985), Lye Brook’s overbanks were described as “boulder strewn” after the August 1976 flood. The U.S. Route 7 crossing of Lye Brook is a 28-ft-long, two-lane bridge consisting of one 25-foot concrete span (Vermont Agency of Transportation, written communication, September

  4. Limestone fluidized bed treatment of acid-impacted water at the Craig Brook National Fish Hatchery, Maine, USA

    USGS Publications Warehouse

    Sibrell, P.L.; Watten, B.J.; Haines, T.A.; Spaulding, B.W.

    2006-01-01

    Decades of atmospheric acid deposition have resulted in widespread lake and river acidification in the northeastern U.S. Biological effects of acidification include increased mortality of sensitive aquatic species such as the endangered Atlantic salmon (Salmo salar). The purpose of this paper is to describe the development of a limestone-based fluidized bed system for the treatment of acid-impacted waters. The treatment system was tested at the Craig Brook National Fish Hatchery in East Orland, Maine over a period of 3 years. The product water from the treatment system was diluted with hatchery water to prepare water supplies with three different levels of alkalinity for testing of fish health and survival. Based on positive results from a prototype system used in the first year of the study, a larger demonstration system was used in the second and third years with the objective of decreasing operating costs. Carbon dioxide was used to accelerate limestone dissolution, and was the major factor in system performance, as evidenced by the model result: Alk = 72.84 ?? P(CO2)1/2; R2 = 0.975. No significant acidic incursions were noted for the control water over the course of the study. Had these incursions occurred, survivability in the untreated water would likely have been much more severely impacted. Treated water consistently provided elevated alkalinity and pH above that of the hatchery source water. ?? 2005 Elsevier B.V. All rights reserved.

  5. Primary and Secondary Controls on Measurements of Forest Height Using Large-Footprint Lidar at the Hubbard Brook LTER

    NASA Technical Reports Server (NTRS)

    Knox, Robert G.; Blair, J. Bryan; Schwarz, Paul A.; Hofton, Michelle A.; Dubayah, Ralph; Smith, David E. (Technical Monitor)

    2000-01-01

    On September 26, 1999, we mapped canopy structure over 90% of the Hubbard Brook Experimental Forest in White Mountain National Forest, New Hampshire, using the Laser Vegetation Imaging Sensor (LVIS). This airborne instrument was configured to emulate data expected from the Vegetation Canopy Lidar (VCL) space mission. We compared above ground heights of the tallest surfaces detected by lidar with average forest canopy heights estimated from tree-based measurements in or near 346 0.05 ha plots (made in autumn of 1997 and 1998). Vegetation heights had by far the predominant influence on lidar top heights, but with this large data set we were able to measure two significant secondary effects: those of steepness or slope of the underlying terrain and of tree crown form. The size of the slope effect was intermediate between that expected from models of homogeneous canopy layers and for solitary tree crowns. The first detected surfaces were also proportionately taller for plots with more basal area in broad leaved northern hardwoods than for mostly coniferous plots. We expected this because of the contrast between the shapes of cumulative distributions of surface area for elliptical or hemi-elliptical tree crowns and those for conical crowns. Correcting for these secondary effects, when appropriate data are available for calibration, may improve vegetation structure estimates in regional studies using VCL or similar lidar data sources.

  6. Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations

    PubMed Central

    Lamaze, Fabien C; Garant, Dany; Bernatchez, Louis

    2013-01-01

    Translocation of plants and animal populations between environments is one of the major forms of anthropogenic perturbation experienced by pristine populations, and consequently, human-mediated hybridization by stocking practices between wild and exogenous conspecifics is of increasing concern. In this study, we compared the expression of seven candidate genes involved in multifactorial traits and regulatory pathways for growth as a function of level of introgressive hybridization between wild and domestic brook charr to test the null hypothesis of no effect of introgression on wild fish. Our analyses revealed that the expression of two of the genes tested, cytochrome c oxidase VIIa and the growth hormone receptor isoform I, was positively correlated with the level of introgression. We also observed a positive relationship between the extent of introgression and physiological status quantified by the Fulton's condition index. The expression of other genes was influenced by other variables, including year of sampling (reflecting different thermal conditions), sampling method and lake of origin. This is the first demonstration in nature that introgression from stocked populations has an impact on the expression of genes playing a role in important biological functions that may be related with fitness in wild introgressed populations. PMID:23467764

  7. Micromorphologic evidence for paleosol development in the Endicott group, Siksikpuk formation, Kingak(?) shale, and Ipewik formation, western Brooks range, Alaska

    USGS Publications Warehouse

    Dumoulin, Julie A.; White, Tim

    2005-01-01

    Micromorphologic evidence indicates the presence of paleosols in drill-core samples from four sedimentary units in the Red Dog area, western Brooks Range. Well-developed sepic-plasmic fabrics and siderite spherules occur in claystones of the Upper Devonian through Lower Mississippian(?) Kanayut Conglomerate (Endicott Group), the Pennsylvanian through Permian Siksikpuk Formation (Etivluk Group), the Jurassic through Lower Cretaceous Kingak(?) Shale, and the Lower Cretaceous Ipewik Formation. Although exposure surfaces have been previously recognized in the Endicott Group and Kingak Shale on the basis of outcrop features, our study is the first microscopic analysis of paleosols from these units, and it provides the first evidence of subaerial exposure in the Siksikpuk and Ipewik Formations. Regional stratigraphic relations and geochemical data support our interpretations. Paleosols in the Siksikpuk, Kingak, and Ipewik Formations likely formed in nearshore coastal-plain environments, with pore waters subjected to inundation by the updip migration of slightly brackish ground water, whereas paleosols in the Kanayut Conglomerate probably formed in a more distal setting relative to a marine basin.

  8. Feasibility of Conducting J-2X Engine Testing at the Glenn Research Center Plum Brook Station B-2 Facility

    NASA Technical Reports Server (NTRS)

    Schafer, Charles F.; Cheston, Derrick J.; Worlund, Armis L.; Brown, James R.; Hooper, William G.; Monk, Jan C.; Winstead, Thomas W.

    2008-01-01

    A trade study of the feasibility of conducting J-2X testing in the Glenn Research Center (GRC) Plum Brook Station (PBS) B-2 facility was initiated in May 2006 with results available in October 2006. The Propulsion Test Integration Group (PTIG) led the study with support from Marshall Space Flight Center (MSFC) and Jacobs Sverdrup Engineering. The primary focus of the trade study was on facility design concepts and their capability to satisfy the J-2X altitude simulation test requirements. The propulsion systems tested in the B-2 facility were in the 30,000-pound (30K) thrust class. The J-2X thrust is approximately 10 times larger. Therefore, concepts significantly different from the current configuration are necessary for the diffuser, spray chamber subsystems, and cooling water. Steam exhaust condensation in the spray chamber is judged to be the key risk consideration relative to acceptable spray chamber pressure. Further assessment via computational fluid dynamics (CFD) and other simulation capabilities (e.g. methodology for anchoring predictions with actual test data and subscale testing to support investigation.

  9. Level II scour analysis for Bridge 49 (WALLVT01030049) on State Highway 103, crossing Freeman Brook, Wallingford, Vermont

    USGS Publications Warehouse

    Flynn, Robert H.; Severance, Timothy

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure WALLVT01030049 on State Highway 103 crossing Freeman Brook, Wallingford, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in south-central Vermont. The 11.7-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is pasture with trees and brush on the immediate banks except for the upstream left overbank which is tree covered. A levee composed of stone fill was constructed along the upstream left bank in order to keep flow from reaching the flood plain left (south) of the brook. In the study area, Freeman Brook has an incised, straight channel with a slope of approximately 0.02 ft/ft, an average channel top width of 56 ft and an average channel depth of 6 ft. The predominant channel bed materials are gravel and cobbles with a median grain size (D50) of 62.9 mm (0.206 ft). The geomorphic assessment at the time of the Level I and Level II site visit on October 10, 1995, indicated that the reach was stable. The State Highway 103 crossing of the Freeman Brook is a 54-ft-long, two-lane bridge consisting of one 50-foot concrete T-beam span (Vermont Agency of Transportation, written communication, March 15, 1995). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 25 degrees to

  10. Density-dependent regulation of brook trout population dynamics along a core-periphery distribution gradient in a central Appalachian watershed.

    PubMed

    Huntsman, Brock M; Petty, J Todd

    2014-01-01

    Spatial population models predict strong density-dependence and relatively stable population dynamics near the core of a species' distribution with increasing variance and importance of density-independent processes operating towards the population periphery. Using a 10-year data set and an information-theoretic approach, we tested a series of candidate models considering density-dependent and density-independent controls on brook trout population dynamics across a core-periphery distribution gradient within a central Appalachian watershed. We sampled seven sub-populations with study sites ranging in drainage area from 1.3-60 km(2) and long-term average densities ranging from 0.335-0.006 trout/m. Modeled response variables included per capita population growth rate of young-of-the-year, adult, and total brook trout. We also quantified a stock-recruitment relationship for the headwater population and coefficients of variability in mean trout density for all sub-populations over time. Density-dependent regulation was prevalent throughout the study area regardless of stream size. However, density-independent temperature models carried substantial weight and likely reflect the effect of year-to-year variability in water temperature on trout dispersal between cold tributaries and warm main stems. Estimated adult carrying capacities decreased exponentially with increasing stream size from 0.24 trout/m in headwaters to 0.005 trout/m in the main stem. Finally, temporal variance in brook trout population size was lowest in the high-density headwater population, tended to peak in mid-sized streams and declined slightly in the largest streams with the lowest densities. Our results provide support for the hypothesis that local density-dependent processes have a strong control on brook trout dynamics across the entire distribution gradient. However, the mechanisms of regulation likely shift from competition for limited food and space in headwater streams to competition for

  11. Density-Dependent Regulation of Brook Trout Population Dynamics along a Core-Periphery Distribution Gradient in a Central Appalachian Watershed

    PubMed Central

    Huntsman, Brock M.; Petty, J. Todd

    2014-01-01

    Spatial population models predict strong density-dependence and relatively stable population dynamics near the core of a species' distribution with increasing variance and importance of density-independent processes operating towards the population periphery. Using a 10-year data set and an information-theoretic approach, we tested a series of candidate models considering density-dependent and density-independent controls on brook trout population dynamics across a core-periphery distribution gradient within a central Appalachian watershed. We sampled seven sub-populations with study sites ranging in drainage area from 1.3–60 km2 and long-term average densities ranging from 0.335–0.006 trout/m. Modeled response variables included per capita population growth rate of young-of-the-year, adult, and total brook trout. We also quantified a stock-recruitment relationship for the headwater population and coefficients of variability in mean trout density for all sub-populations over time. Density-dependent regulation was prevalent throughout the study area regardless of stream size. However, density-independent temperature models carried substantial weight and likely reflect the effect of year-to-year variability in water temperature on trout dispersal between cold tributaries and warm main stems. Estimated adult carrying capacities decreased exponentially with increasing stream size from 0.24 trout/m in headwaters to 0.005 trout/m in the main stem. Finally, temporal variance in brook trout population size was lowest in the high-density headwater population, tended to peak in mid-sized streams and declined slightly in the largest streams with the lowest densities. Our results provide support for the hypothesis that local density-dependent processes have a strong control on brook trout dynamics across the entire distribution gradient. However, the mechanisms of regulation likely shift from competition for limited food and space in headwater streams to competition for

  12. An Analysis of the Relationship Between Readability of Air Force Procedural Manuals and Discrepancies Involving Non-Compliance with the Procedures.

    ERIC Educational Resources Information Center

    Johnson, Keith H.; And Others

    Readability of Air Force logistics procedural manuals is generally too high for their readers. The readers, from different Air Force Specialties (AFS), are faced with a readability/reading ability gap when using the procedural manuals. This 'gap' was found to correlate directly with the frequency of discrepancies actually found over a two-year…

  13. Low strain, long life creep fatigue of AF2-1DA and INCO 718

    NASA Technical Reports Server (NTRS)

    Thakker, A. B.; Cowles, B. A.

    1983-01-01

    Two aircraft turbine disk alloys, GATORIZED AF2-DA and INCO 718 were evaluated for their low strain long life creep-fatigue behavior. Static (tensile and creep rupture) and cyclic properties of both alloys were characterized. The cntrolled strain LCF tests were conducted at 760 C (1400 F) and 649 C (1200 F) for AF2-1DA and INCO 718, respectively. Hold times were varied for tensile, compressive and tensile/compressive strain dwell (relaxation) tests. Stress (creep) hold behavior of AF2-1DA was also evaluated. Generally, INCO 718 exhibited more pronounced reduction in cyclic life due to hold than AF2-1DA. The percent reduction in life for both alloys for strain dwell tests was greater at low strain ranges (longer life regime). Changing hold time from 0 to 0.5, 2.0 and 15.0 min. resulted in corresponding reductions in life. The continuous cycle and cyclic/dwell initiation failure mechanism was predominantly transgranular for AF2-1DA and intergranular for INCO 718.

  14. The binding of (3H)AF-DX 384 to rat ileal smooth muscle muscarinic receptors

    SciTech Connect

    Entzeroth, M.; Mayer, N. )

    1991-01-01

    The tritiated cardioselective muscarinic antagonist AF-DX 384 (5,11-dihydro-11-(2-(-(8-dipropylamino)methyl)-1-piperidinyl-ethyl-amino-carbonyl)-6H-pyrido (2,3-b) (1,4)benzodiazepin-6-one) was used to label muscarinic receptors in the rat ileum. Saturation binding to membrane suspensions revealed a high affinity binding site with a Kd of 9.2 nM. The maximal number of binding sites labeled in this tissue (Bmax) is 237 fmol/mg protein. The association and dissociation kinetics were well represented by single exponential reactions, and the dissociation constant obtained from the ratio of rate constants was in agreement with that derived from saturation experiments. Specific binding was inhibited by muscarinic antagonists with a rank order of potencies of atropine (pKi: 8.80) greater than 4-DAMP (pKi: 8.23) = AF-DX 384 (pKi: 8.20) greater than AF-DX 116 (pKi: 7.09) = hexahydro-sila-difenidol (pKi: 6.97) greater than pirenzepine (pKi: 6.49) and is consistent with the interaction of (3H)AF-DX 384 with muscarinic receptors of the M2 subtype. It can be concluded that (3H)AF-DX 384 can be used to selectively label M2 muscarinic receptors in heterogeneous receptor populations.

  15. A simple web-based tool to compare freshwater fish data collected using AFS standard methods

    USGS Publications Warehouse

    Bonar, Scott A.; Mercado-Silva, Norman; Rahr, Matt; Torrey, Yuta T.; Cate, Averill

    2016-01-01

    The American Fisheries Society (AFS) recently published Standard Methods for Sampling North American Freshwater Fishes. Enlisting the expertise of 284 scientists from 107 organizations throughout Canada, Mexico, and the United States, this text was developed to facilitate comparisons of fish data across regions or time. Here we describe a user-friendly web tool that automates among-sample comparisons in individual fish condition, population length-frequency distributions, and catch per unit effort (CPUE) data collected using AFS standard methods. Currently, the web tool (1) provides instantaneous summaries of almost 4,000 data sets of condition, length frequency, and CPUE of common freshwater fishes collected using standard gears in 43 states and provinces; (2) is easily appended with new standardized field data to update subsequent queries and summaries; (3) compares fish data from a particular water body with continent, ecoregion, and state data summaries; and (4) provides additional information about AFS standard fish sampling including benefits, ongoing validation studies, and opportunities to comment on specific methods. The web tool—programmed in a PHP-based Drupal framework—was supported by several AFS Sections, agencies, and universities and is freely available from the AFS website and fisheriesstandardsampling.org. With widespread use, the online tool could become an important resource for fisheries biologists.

  16. [AF + BAF for treating effluent in the sewage plant of the resin and chemical industry park].

    PubMed

    Tu, Yong; Liu, Wei-Jing; Zhang, Yao-Hui; Xu, Jun; Tang, Min; Chen, Yong; Bai, Yong-Gang

    2014-06-01

    The anaerobic filter (AF) and biological aerated filter (BAF) were employed to treat the effluent in a sewage plant of the resin and chemical industry park. The ceramsite was used in BAF. In this study, the influent COD was 200-300 mg x L(-1) and the pilot model scale was 2-4 L x d(-1). According to the results, the AF-BAF treatment had a good effect on organic wastewater. When the AF HRT was 24 h and BAF was 12 h, the removal of COD reached 73.4%, and that of NH4(+)-N reached 93.8%. From gas chromatography-mass spectrometry (GC-MS) and three-dimensional fluorescence analysis, it was found that small organic molecules and microbial metabolites could be removed effectively. However, there was no obviously effect on the removal of saturated alkane and nitrogenous heterocyclic compounds. From the denature gradient gel electrophoresis (DGGE) spectra analysis, it was shown that there were more kinds of microorganism in the sludge of the AF than in the up-flow anaerobic sludge bed (UASB), which indicates that the AF-BAF system is more effective on treating effluent in a sewage plant of the resin and chemical industry park.

  17. GLA-AF, an emulsion-free vaccine adjuvant for pandemic influenza.

    PubMed

    Clegg, Christopher H; Roque, Richard; Perrone, Lucy A; Rininger, Joseph A; Bowen, Richard; Reed, Steven G

    2014-01-01

    The ongoing threat from Influenza necessitates the development of new vaccine and adjuvant technologies that can maximize vaccine immunogenicity, shorten production cycles, and increase global vaccine supply. Currently, the most successful adjuvants for Influenza vaccines are squalene-based oil-in-water emulsions. These adjuvants enhance seroprotective antibody titers to homologous and heterologous strains of virus, and augment a significant dose sparing activity that could improve vaccine manufacturing capacity. As an alternative to an emulsion, we tested a simple lipid-based aqueous formulation containing a synthetic TLR4 ligand (GLA-AF) for its ability to enhance protection against H5N1 infection. GLA-AF was very effective in adjuvanting recombinant H5 hemagglutinin antigen (rH5) in mice and was as potent as the stable emulsion, SE. Both adjuvants induced similar antibody titers using a sub-microgram dose of rH5, and both conferred complete protection against a highly pathogenic H5N1 challenge. However, GLA-AF was the superior adjuvant in ferrets. GLA-AF stimulated a broader antibody response than SE after both the prime and boost immunization with rH5, and ferrets were better protected against homologous and heterologous strains of H5N1 virus. Thus, GLA-AF is a potent emulsion-free adjuvant that warrants consideration for pandemic influenza vaccine development. PMID:24551202

  18. Neuronal and microvascular alterations induced by the cholinergic toxin AF64A in the rat retina.

    PubMed

    Gómez-Ramos, P; Galea, E; Estrada, C

    1990-06-18

    The choline analogue ethylcholine mustard aziridinium ion (AF64A) produces both neuronal and non-neuronal alterations in the rat retina. The possible involvement of the retinal capillaries in the origin of the apparently non-specific lesions has been investigated. Two hours after a single intraocular injection of 5 nmol AF64A, ultrastructural alterations were observed in neurons of the inner nuclear layer and the ganglion cell layer, where cholinergic cells are located. One week later, the number of cholinergic neurons, identified by choline acetyltransferase immunohistochemistry, was decreased to 65% of control, the neurons located in the inner nuclear layer being more sensitive than those in the ganglion cell layer. The same dose of AF64A also induced ultrastructural changes in retinal capillaries, which showed a significant increase in the number of pinocytotic vesicles and microvilli in the endothelial cells, 2-5 h after the toxin administration. One day later, arterioles and capillaries presented contracted profiles and the lumen was occasionally lost. The sensitivity of endothelial cells to the toxic effects of AF64A may be explained by the presence in the cerebral endothelium of a choline transport mechanism with an affinity close to that of cerebral synaptosomes. In vitro, both neuronal and endothelial choline uptake systems were equally sensitive to the toxin inhibitory effect. The early and severe vascular alterations induced in the retinal microvessels by AF64A may produce changes in blood perfusion and capillary permeability that could account for the apparently non-specific histological damage.

  19. Detection of human tumor cells by amplicon fusion site polymerase chain reaction (AFS-PCR)

    PubMed Central

    Weber, Axel; Taube, Sylvia; Starke, Sven; Bergmann, Eckhard; Christiansen, Nina Merete; Christiansen, Holger

    2011-01-01

    Reliable diagnostic strategies for individuals with cancer demand practical methods for highly sensitive and specific detection of tumor cells. Amplification of genomic regions that include putative oncogenes is common in tumor cells of various types. Genomic array platforms offer the opportunity to identify and precisely map amplified genomic regions (ampGRs). The stable existence of these tumor cell–specific genomic aberrations during and after therapy, in theory, make ampGRs optimal targets for cancer diagnostics. In this study, we mapped ampGRs around the proto-oncogene MYCN of human neuroblastomas using a high-resolution tiling array (HR-TA). Based on the HR-TA data, we were able to precisely describe the telomeric and centromeric borders of the ampGRs and deduce virtual fusion sites of the joined ampGRs (amplicon fusion sites [AFSs]). These AFSs served as blueprints for the subsequent design of AFS bridging PCR assays (AFS-PCRs). Strikingly, these assays were absolutely tumor cell specific and capable of detecting 1 tumor cell in 1 × 106 to 8 × 106 control cells. We successfully proved the in vivo practicability of AFS-PCR by detecting and quantifying the specific AFS DNA of human MYCN-amplified neuroblastomas in the patients’ corresponding peripheral blood and bone marrow samples. Thus, we believe AFS-PCR could become a powerful and nevertheless feasible personalized diagnostic tool applicable to a large number of cancer patients, including children with MYCN-amplified neuroblastomas. PMID:21293059

  20. Detection of human tumor cells by amplicon fusion site polymerase chain reaction (AFS-PCR).

    PubMed

    Weber, Axel; Taube, Sylvia; Starke, Sven; Bergmann, Eckhard; Christiansen, Nina Merete; Christiansen, Holger

    2011-02-01

    Reliable diagnostic strategies for individuals with cancer demand practical methods for highly sensitive and specific detection of tumor cells. Amplification of genomic regions that include putative oncogenes is common in tumor cells of various types. Genomic array platforms offer the opportunity to identify and precisely map amplified genomic regions (ampGRs). The stable existence of these tumor cell–specific genomic aberrations during and after therapy, in theory, make ampGRs optimal targets for cancer diagnostics. In this study, we mapped ampGRs around the proto-oncogene MYCN of human neuroblastomas using a high-resolution tiling array (HR-TA). Based on the HR-TA data, we were able to precisely describe the telomeric and centromeric borders of the ampGRs and deduce virtual fusion sites of the joined ampGRs (amplicon fusion sites [AFSs]). These AFSs served as blueprints for the subsequent design of AFS bridging PCR assays (AFS-PCRs). Strikingly, these assays were absolutely tumor cell specific and capable of detecting 1 tumor cell in 1 × 10(6) to 8 × 10(6) control cells. We successfully proved the in vivo practicability of AFS-PCR by detecting and quantifying the specific AFS DNA of human MYCN-amplified neuroblastomas in the patients’ corresponding peripheral blood and bone marrow samples. Thus, we believe AFS-PCR could become a powerful and nevertheless feasible personalized diagnostic tool applicable to a large number of cancer patients, including children with MYCN-amplified neuroblastomas.

  1. Low strain, long life creep fatigue of AF2-1DA and INCO 718

    SciTech Connect

    Thakker, A.B.; Cowles, B.A.

    1983-04-01

    Two aircraft turbine disk alloys, GATORIZED AF2-DA and INCO 718 were evaluated for their low strain long life creep-fatigue behavior. Static (tensile and creep rupture) and cyclic properties of both alloys were characterized. The cntrolled strain LCF tests were conducted at 760 C (1400 F) and 649 C (1200 F) for AF2-1DA and INCO 718, respectively. Hold times were varied for tensile, compressive and tensile/compressive strain dwell (relaxation) tests. Stress (creep) hold behavior of AF2-1DA was also evaluated. Generally, INCO 718 exhibited more pronounced reduction in cyclic life due to hold than AF2-1DA. The percent reduction in life for both alloys for strain dwell tests was greater at low strain ranges (longer life regime). Changing hold time from 0 to 0.5, 2.0 and 15.0 min. resulted in corresponding reductions in life. The continuous cycle and cyclic/dwell initiation failure mechanism was predominantly transgranular for AF2-1DA and intergranular for INCO 718.

  2. An Evaluation of the Impacts of AF-M315E Propulsion Systems for Varied Mission Applications

    NASA Technical Reports Server (NTRS)

    Deans, Matthew C.; Oleson, Steven R.; Fittje, James; Colozza, Anthony; Packard, Tom; Gyekenyesi, John; McLean, Christopher H.; Spores, Ronald A.

    2015-01-01

    The purpose of the AF-M315E COMPASS study is to identify near-term (3-5 years) and long term (5 years +) opportunities for infusion, specifically the thruster and associated component technologies being developed as part of the GPIM project. Develop design reference missions which show the advantages of the AF-M315E green propulsion system. Utilize a combination of past COMPASS designs and selected new designs to demonstrate AF-M315E advantages. Use the COMPASS process to show the puts and takes of using AF-M315E at the integrated system level.

  3. AF1q is a novel TCF7 co-factor which activates CD44 and promotes breast cancer metastasis

    PubMed Central

    Park, Jino; Schlederer, Michaela; Schreiber, Martin; Ice, Ryan; Merkel, Olaf; Bilban, Martin; Hofbauer, Sebastian; Kim, Soojin; Addison, Joseph; Zou, Jie; Ji, Chunyan; Bunting, Silvia T.; Wang, Zhengqi; Shoham, Menachem; Huang, Gang; Bago-Horvath, Zsuzsanna; Gibson, Laura F.; Rojanasakul, Yon; Remick, Scot; Ivanov, Alexey; Pugacheva, Elena; Bunting, Kevin D.; Moriggl, Richard

    2015-01-01

    AF1q is an MLL fusion partner that was identified from acute myeloid leukemia (AML) patients with t (1; 11) (q21; q23) chromosomal abnormality. The function of AF1q is not yet fully known, however, elevated AF1q expression is associated with poor clinical outcomes in various malignancies. Here, we show that AF1q specifically binds to T-cell-factor-7 (TCF7) in the Wnt signaling pathway and results in transcriptional activation of CD44 as well as multiple downstream targets of the TCF7/LEF1. In addition, enhanced AF1q expression promotes breast cancer cell proliferation, migration, mammosphere formation, and chemo-resistance. In xenograft models, enforced AF1q expression in breast cancer cells also promotes liver metastasis and lung colonization. In a cohort of 63 breast cancer patients, higher percentages of AF1q-positive cancer cells in primary sites were associated with significantly poorer overall survival (OS), disease-free survival (DFS), and brain metastasis-free survival (b-MFS). Using paired primary/metastatic samples from the same patients, we demonstrate that AF1q-positive breast cancer cells become dynamically dominant in the metastatic sites compared to the primary sites. Our findings indicate that breast cancer cells with a hyperactive AF1q/TCF7/CD44 regulatory axis in the primary sites may represent “metastatic founder cells” which have invasive properties. PMID:26079538

  4. Pseudomonas syringae type III effector HopAF1 suppresses plant immunity by targeting methionine recycling to block ethylene induction

    PubMed Central

    Washington, Erica J.; Mukhtar, M. Shahid; Finkel, Omri M.; Wan, Li; Kieber, Joseph J.; Dangl, Jeffery L.

    2016-01-01

    HopAF1 is a type III effector protein of unknown function encoded in the genomes of several strains of Pseudomonas syringae and other plant pathogens. Structural modeling predicted that HopAF1 is closely related to deamidase proteins. Deamidation is the irreversible substitution of an amide group with a carboxylate group. Several bacterial virulence factors are deamidases that manipulate the activity of specific host protein substrates. We identified Arabidopsis methylthioadenosine nucleosidase proteins MTN1 and MTN2 as putative targets of HopAF1 deamidation. MTNs are enzymes in the Yang cycle, which is essential for the high levels of ethylene biosynthesis in Arabidopsis. We hypothesized that HopAF1 inhibits the host defense response by manipulating MTN activity and consequently ethylene levels. We determined that bacterially delivered HopAF1 inhibits ethylene biosynthesis induced by pathogen-associated molecular patterns and that Arabidopsis mtn1 mtn2 mutant plants phenocopy the effect of HopAF1. Furthermore, we identified two conserved asparagines in MTN1 and MTN2 from Arabidopsis that confer loss of function phenotypes when deamidated via site-specific mutation. These residues are potential targets of HopAF1 deamidation. HopAF1-mediated manipulation of Yang cycle MTN proteins is likely an evolutionarily conserved mechanism whereby HopAF1 orthologs from multiple plant pathogens contribute to disease in a large variety of plant hosts. PMID:27274076

  5. Air Pollution

    MedlinePlus

    ... tobacco smoke. How is air pollution linked to climate change? While climate change is a global process, it ... ozone levels are also a concern. Impacts of Climate Change on Human Health in the United States: A ...

  6. Air Apparent.

    ERIC Educational Resources Information Center

    Harbster, David A.

    1988-01-01

    Explains the principle upon which a barometer operates. Describes how to construct two barometric devices for use in the classroom that show air's changing pressure. Cites some conditions for predicting weather. (RT)

  7. Cloning and characterization of two duplicated interleukin-17A/F2 genes in common carp (Cyprinus carpio L.): Transcripts expression and bioactivity of recombinant IL-17A/F2.

    PubMed

    Li, Hongxia; Yu, Juhua; Li, Jianlin; Tang, Yongkai; Yu, Fan; Zhou, Jie; Yu, Wenjuan

    2016-04-01

    Interleukin-17 (IL-17) plays an important role in inflammation and host defense in mammals. In this study, we identified two duplicated IL-17A/F2 genes in the common carp (Cyprinus carpio) (ccIL-17A/F2a and ccIL-17A/F2b), putative encoded proteins contain 140 amino acids (aa) with conserved IL-17 family motifs. Expression analysis revealed high constitutive expression of ccIL-17A/F2s in mucosal tissues, including gill, skin and intestine, their expression could be induced by Aeromonas hydrophila, suggesting a potential role in mucosal immunity. Recombinant ccIL-17A/F2a protein (rccIL-17A/F2a) produced in Escherichia coli could induce the expression of proinflammatory cytokines (IL-1β) and the antimicrobial peptides S100A1, S100A10a and S100A10b in the primary kidney in a dose- and time-dependent manner. Above findings suggest that ccIL-17A/F2 plays an important role in both proinflammatory and innate immunity. Two duplicated ccIL-17A/F2s showed different expression level with ccIL-17A/F2a higher than b, comparison of two 5' regulatory regions indicated the length from anticipated promoter to transcriptional start site (TSS) and putative transcription factor binding site (TFBS) were different. Promoter activity of ccIL-17A/F2a was 2.5 times of ccIL-17A/F2b which consistent with expression results of two genes. These suggest mutations in 5'regulatory region contributed to the differentiation of duplicated genes. To our knowledge, this is the first report to analyze 5'regulatory region of piscine IL-17 family genes. PMID:26921542

  8. Urban air

    NASA Astrophysics Data System (ADS)

    Showstack, Randy

    Air pollution and the risk of potential health effects are not sufficiently convincing reasons for people to stop driving their cars, according to a study by the Population Reference Bureau (PRB) released on November 18.While sufficient levels of suspended particulate matter, carbon monoxide, and lead can present health concerns, the study found that many people surveyed for the study were not convinced of the clear linkage between air pollution and health.

  9. Level II scour analysis for Bridge 28 (MNTGTH00190028) on Town Highway 19, crossing Wade Brook, Montgomery, Vermont

    USGS Publications Warehouse

    Boehmler, Erick M.; Hammond, Robert E.

    1996-01-01

    basin. In the vicinity of the study site, the banks have dense woody vegetation coverage. In the study area, Wade Brook has an incised, sinuous channel with a slope of approximately 0.0253 ft/ft, an average channel top width of 58 ft and an average channel depth of 4 ft. The predominant channel bed material is gravel and cobbles (D50 is 81.8 mm or 0.269 ft). The geomorphic assessment at the time of the Level I and Level II site visit on November 9, 1994, indicated that the reach was stable. The town highway 19 crossing of Wade Brook is a 24-ft-wide corrugated steel, multi-plate pipe-arch (Vermont Agency of Transportation, written communication, August 3, 1994). The culvert is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 30 degrees to the opening while the opening-skew-to-roadway is 26 degrees. There was no localized scour evident during the Level I assessment. The scour protection measures at the site were type-2 stone fill (less than 36 inches diameter) on all of the roadway embankments, the upstream left bank, and each wingwall. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows ranged from 0.5 to 1.0 ft. The worst-case contraction scour occurred at the 500-year discharge. Abutment scour ranged from 8.6 to 16

  10. Level II scour analysis for Bridge 12 (HUNTTH00010012) on Town Highway 001, crossing Brush Brook, Huntington, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.; Wild, Emily C.

    1997-01-01

    frequency data contained in the Flood Insurance Study for the Town of Huntington (U.S. Department of Housing and Urban Development, 1978). The site is in the Green Mountain section of the New England physiographic province in central Vermont. The 9.19-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is pasture while the immediate banks have some woody vegetation. In the study area, the Brush Brook has a sinuous channel with a slope of approximately 0.02 ft/ft, an average channel top width of 62 ft and an average bank height of 5 ft. The channel bed material ranges from gravel to cobble with a median grain size (D50) of 100.0 mm (0.328 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 25, 1996, indicated that the reach was stable. The Town Highway 1 crossing of Brush Brook is a 64-ft-long, two-lane bridge consisting of one 62-foot steel-stringer span (Vermont Agency of Transportation, written communication, November 30, 1995). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 10 degrees to the opening while the opening-skew-to-roadway is 6 degrees. Channel scour 2.2 ft deeper than the mean thalweg depth was observed along the upstream right bank and along the base of the spill-through protection for the right abutment during the Level I assessment. Scour protection measured at the site was type-2 stone fill (less than 36 inches diameter) along the upstream left and right banks and in front of all four wingwalls. In front of the abutments, there was type-3 stone fill (less than 48 inches diameter) forming a spill-through slope. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and recommended rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others

  11. Level II scour analysis for Bridge 12 (HUNTTH00010012) on Town Highway 001, crossing Brush Brook, Huntington, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.; Wild, Emily C.

    1997-01-01

    frequency data contained in the Flood Insurance Study for the Town of Huntington (U.S. Department of Housing and Urban Development, 1978). The site is in the Green Mountain section of the New England physiographic province in central Vermont. The 9.19-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is pasture while the immediate banks have some woody vegetation. In the study area, the Brush Brook has a sinuous channel with a slope of approximately 0.02 ft/ft, an average channel top width of 62 ft and an average bank height of 5 ft. The channel bed material ranges from gravel to cobble with a median grain size (D50) of 100.0 mm (0.328 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 25, 1996, indicated that the reach was stable. The Town Highway 1 crossing of Brush Brook is a 64-ft-long, two-lane bridge consisting of one 62-foot steel-stringer span (Vermont Agency of Transportation, written communication, November 30, 1995). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 10 degrees to the opening while the opening-skew-to-roadway is 6 degrees. Channel scour 2.2 ft deeper than the mean thalweg depth was observed along the upstream right bank and along the base of the spill-through protection for the right abutment during the Level I assessment. Scour protection measured at the site was type-2 stone fill (less than 36 inches diameter) along the upstream left and right banks and in front of all four wingwalls. In front of the abutments, there was type-3 stone fill (less than 48 inches diameter) forming a spill-through slope. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and recommended rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others

  12. Air Force highly integrated photonics (HIP) program

    NASA Astrophysics Data System (ADS)

    Horne, Merton A.; Schantz, Howard J.; Newcomer, Stephen O.; Whaley, Gregory J.

    2006-05-01

    This presentation will describe the Air Force Research Laboratory Highly Integrated Photonics Program (AF HIP) and its objective to integrate on a monolithic device, all of the optical components required to serve as a bus coupler in an all optical data communication network. This research and development program utilizes advanced technologies in silicon on insulator (SOI) and silica planar lightwave circuits (PLC) to design, develop, characterize, and demonstrate highly integrated photonic devices that can be transitioned into both current and emerging tactical platforms for the U.S. Air Force. This effort strives to overcome several existing constraints with respect to the integration and packaging aspects of the current generation of COTS optical devices. Monolithic integration (chips fabricated out of a single material system) remains the ultimate vision for integrated optics.

  13. Modeling spall in HY100, HY130, and AF1410 steels

    NASA Astrophysics Data System (ADS)

    Garrett, R. K.; Rajendran, A. M.; Last, H. R.

    1996-05-01

    A comparison spall analysis between three matensitic steels: HY100, HY130, and AF1410 is presented Metallurgical observations on the fracture surfaces of uniaxial tensile specimens as well as the spalled target plates confirmed the nucleation, growth, and coalescence of microvoids in these steels. The threshold stress for void nucleation in these steels were determined from the spall analysis using the EPIC finite element code. According to the model, the spall nucleation occurred at higher stress levels in AF1410 compared to HY100 and HY130. A complete set of material model constants has been determined for these three steels.

  14. Association of deformation and fluid events in the central Brooks Range fold-and-thrust belt, Northern Alaska

    USGS Publications Warehouse

    Moore, Thomas E.; Potter, Christopher J.; O'Sullivan, Paul B.; Shelton, Kevin L.; Underwood, Michael B.

    2003-01-01

    Ocentral Brooks Range consists of two superposed north-directed contractional orogens, one formed between 140-120 Ma and the other at ~60-45 Ma. The older orogen was an arc-continent collisional zone characterized by far-traveled allochthons and relatively low structural relief. The younger orogen is a retroarc thrust belt with relatively low amounts of shortening and high structural relief. Folding and thrusting of the younger episode is superimposed on the thin-skinned deformational wedge of the earlier orogen and also produced a frontal triangle zone in a thick sequence of mid-Cretaceous foreland basin sediments to the north. Stable isotope compositions of calcite and quartz veins indicate two fluid events including: (1) an earlier, higher-temperature (~250-300° C) event that produced veins in deformed Devonian clastic rocks, and (2) a younger, lower-temperature (~150° C) event that deposited veins in deformed Mississippian through Albian strata. The fluids in the first event had variable d18O values, but nearly constant d13C values buffered by limestone lithologies. The vein-forming fluids in the second event had similarly variable d18O values, but with distinctly lower d13C values as a result of oxidation of organic matter and/or methane. Zircon fission track ages demonstrate cooling to temperatures below 200° C between 140-120 Ma for the Devonian rocks, whereas zircon and apatite fission track ages show that Mississippian to Albian rocks were never heated above 200° C and cooled below 110-90° C at ~60-45 Ma. These data are interpreted as indicating that the older, high-temperature fluid event was active during thrusting at 120-140 Ma, and the younger fluid event during deformation at ~60-45 Ma. The data and results presented in this poster will be published in early 2004 in Moore and others (in press).

  15. Landscape influences on aluminium and dissolved organic carbon in streams draining the Hubbard Brook valley, New Hampshire, USA

    NASA Astrophysics Data System (ADS)

    Palmer, Sheila M.; Wellington, Brian I.; Johnson, Chris E.; Driscoll, Charles T.

    2005-06-01

    Concentrations of both aluminium (Al) and dissolved organic carbon (DOC) in stream waters are likely to be regulated by factors that influence water flowpaths and residence times, and by the nature of the soil horizons through which waters flow. In order to investigate landscape-scale spatial patterns in streamwater Al and DOC, we sampled seven streams draining the Hubbard Brook valley in central New Hampshire. We observed considerable variation in stream chemistry both within and between headwater watersheds. Across the valley, concentrations of total monomeric aluminium (Alm) ranged from below detection limits (<0.7 μmol l-1) to 22.3 μmol l-1. In general, concentrations of Alm decreased as pH increased downslope. There was a strong relationship between organic monomeric aluminium (Alo) and DOC concentrations (R2 = 0.92).We observed the highest Alm concentrations in: (i) a watershed characterized by a steep narrow drainage basin and shallow soils and (ii) a watershed characterized by exceptionally deep forest floor soils and high concentrations of DOC. Forest floor depth and drainage area together explained much of the variation in ln Alm (R2 = 0.79; N = 45) and ln DOC (R2 = 0.87; N = 45). Linear regression models were moderately successful in predicting ln Alm and ln DOC in streams that were not included in model building. However, when back-transformed, predicted DOC concentrations were as much as 72% adrift from observed DOC concentrations and Alm concentrations were up to 51% off. This geographic approach to modelling Al and DOC is useful for general prediction, but for more detailed predictions, process-level biogeochemical models are required.

  16. A Hydropedological View of Critical Zone Structure and Function at the Hubbard Brook Experimental Forest, New Hampshire, USA

    NASA Astrophysics Data System (ADS)

    Bailey, S. W.; McGuire, K. J.; Bullen, T. D.; Ross, D. S.

    2011-12-01

    The gauged catchments of Hubbard Brook Experimental Forest are typical of upland headwaters of the glaciated portion of the Appalachian Mountain region, with coarse, well drained soils, flashy hydrologic response, and low baseflow of streams. Long-term nutrient cycling studies as well as model formulations of soil genesis, critical loads, and rainfall/runoff response are based on a view of the critical zone as dominated by vertical percolation in unsaturated soils, development of soil horizons parallel to the land surface, mineral weathering inputs to the forest limited to the rooting zone and drainage from lumped catchment reservoirs (e.g., the subsoil) as the dominant source of stream flow. However, an interdisciplinary view encompassing hillslope hydrology, pedology and geology shows striking spatial structure of soils that develop transient water tables within the solum in nearly all landscape positions, including many positions that would be considered well drained. In portions of the catchment, shallow bedrock and relatively low hydraulic conductivity in the subsoil promote slope parallel flow and development of soil horizons laterally along hillslope flowpaths rather than in vertical profiles. We distinguished several hydropedologic units based on presence of diagnostic horizons indicative of differing patterns of lateral translocation, podzolization and carbon accumulation. The distribution of soils defined by a hydropedologic perspective appears to be highly dependent on local drainability and extent and duration of transient subsurface saturation. Spatial and temporal variation in surface water chemistry throughout the stream network reflects the diversity of groundwater chemistry in a two component system - shallow transient saturation in hydropedologic units and deeper permanent saturation of thicker glacial till deposits. This new perspective of critical zone structure offers an opportunity to reinterpret the long term record of this well monitored

  17. Effect of Nutrient Management Planning on Crop Yield, Nitrate Leaching and Sediment Loading in Thomas Brook Watershed

    NASA Astrophysics Data System (ADS)

    Amon-Armah, Frederick; Yiridoe, Emmanuel K.; Ahmad, Nafees H. M.; Hebb, Dale; Jamieson, Rob; Burton, David; Madani, Ali

    2013-11-01

    Government priorities on provincial Nutrient Management Planning (NMP) programs include improving the program effectiveness for environmental quality protection, and promoting more widespread adoption. Understanding the effect of NMP on both crop yield and key water-quality parameters in agricultural watersheds requires a comprehensive evaluation that takes into consideration important NMP attributes and location-specific farming conditions. This study applied the Soil and Water Assessment Tool (SWAT) to investigate the effects of crop and rotation sequence, tillage type, and nutrient N application rate on crop yield and the associated groundwater leaching and sediment loss. The SWAT model was applied to the Thomas Brook Watershed, located in the most intensively managed agricultural region of Nova Scotia, Canada. Cropping systems evaluated included seven fertilizer application rates and two tillage systems (i.e., conventional tillage and no-till). The analysis reflected cropping systems commonly managed by farmers in the Annapolis Valley region, including grain corn-based and potato-based cropping systems, and a vegetable-horticulture system. ANOVA models were developed and used to assess the effects of crop management choices on crop yield and two water-quality parameters (i.e., leaching and sediment loading). Results suggest that existing recommended N-fertilizer rate can be reduced by 10-25 %, for grain crop production, to significantly lower leaching ( P > 0.05) while optimizing the crop yield. The analysis identified the nutrient N rates in combination with specific crops and rotation systems that can be used to manage leaching while balancing impacts on crop yields within the watershed.

  18. Effect of nutrient management planning on crop yield, nitrate leaching and sediment loading in Thomas Brook watershed.

    PubMed

    Amon-Armah, Frederick; Yiridoe, Emmanuel K; Ahmad, Nafees H M; Hebb, Dale; Jamieson, Rob; Burton, David; Madani, Ali

    2013-11-01

    Government priorities on provincial Nutrient Management Planning (NMP) programs include improving the program effectiveness for environmental quality protection, and promoting more widespread adoption. Understanding the effect of NMP on both crop yield and key water-quality parameters in agricultural watersheds requires a comprehensive evaluation that takes into consideration important NMP attributes and location-specific farming conditions. This study applied the Soil and Water Assessment Tool (SWAT) to investigate the effects of crop and rotation sequence, tillage type, and nutrient N application rate on crop yield and the associated groundwater [Formula: see text] leaching and sediment loss. The SWAT model was applied to the Thomas Brook Watershed, located in the most intensively managed agricultural region of Nova Scotia, Canada. Cropping systems evaluated included seven fertilizer application rates and two tillage systems (i.e., conventional tillage and no-till). The analysis reflected cropping systems commonly managed by farmers in the Annapolis Valley region, including grain corn-based and potato-based cropping systems, and a vegetable-horticulture system. ANOVA models were developed and used to assess the effects of crop management choices on crop yield and two water-quality parameters (i.e., [Formula: see text] leaching and sediment loading). Results suggest that existing recommended N-fertilizer rate can be reduced by 10-25 %, for grain crop production, to significantly lower [Formula: see text] leaching (P > 0.05) while optimizing the crop yield. The analysis identified the nutrient N rates in combination with specific crops and rotation systems that can be used to manage [Formula: see text] leaching while balancing impacts on crop yields within the watershed. PMID:23943075

  19. Simulating effects of changing climate and CO(2) emissions on soil carbon pools at the Hubbard Brook experimental forest.

    PubMed

    Dib, Alain E; Johnson, Chris E; Driscoll, Charles T; Fahey, Timothy J; Hayhoe, Katharine

    2014-05-01

    Carbon (C) sequestration in forest biomass and soils may help decrease regional C footprints and mitigate future climate change. The efficacy of these practices must be verified by monitoring and by approved calculation methods (i.e., models) to be credible in C markets. Two widely used soil organic matter models - CENTURY and RothC - were used to project changes in SOC pools after clear-cutting disturbance, as well as under a range of future climate and atmospheric carbon dioxide (CO(2) ) scenarios. Data from the temperate, predominantly deciduous Hubbard Brook Experimental Forest (HBEF) in New Hampshire, USA, were used to parameterize and validate the models. Clear-cutting simulations demonstrated that both models can effectively simulate soil C dynamics in the northern hardwood forest when adequately parameterized. The minimum postharvest SOC predicted by RothC occurred in postharvest year 14 and was within 1.5% of the observed minimum, which occurred in year 8. CENTURY predicted the postharvest minimum SOC to occur in year 45, at a value 6.9% greater than the observed minimum; the slow response of both models to disturbance suggests that they may overestimate the time required to reach new steady-state conditions. Four climate change scenarios were used to simulate future changes in SOC pools. Climate-change simulations predicted increases in SOC by as much as 7% at the end of this century, partially offsetting future CO(2) emissions. This sequestration was the product of enhanced forest productivity, and associated litter input to the soil, due to increased temperature, precipitation and CO(2) . The simulations also suggested that considerable losses of SOC (8-30%) could occur if forest vegetation at HBEF does not respond to changes in climate and CO(2) levels. Therefore, the source/sink behavior of temperate forest soils likely depends on the degree to which forest growth is stimulated by new climate and CO(2) conditions. PMID:24132912

  20. Simulating effects of changing climate and CO(2) emissions on soil carbon pools at the Hubbard Brook experimental forest.

    PubMed

    Dib, Alain E; Johnson, Chris E; Driscoll, Charles T; Fahey, Timothy J; Hayhoe, Katharine

    2014-05-01

    Carbon (C) sequestration in forest biomass and soils may help decrease regional C footprints and mitigate future climate change. The efficacy of these practices must be verified by monitoring and by approved calculation methods (i.e., models) to be credible in C markets. Two widely used soil organic matter models - CENTURY and RothC - were used to project changes in SOC pools after clear-cutting disturbance, as well as under a range of future climate and atmospheric carbon dioxide (CO(2) ) scenarios. Data from the temperate, predominantly deciduous Hubbard Brook Experimental Forest (HBEF) in New Hampshire, USA, were used to parameterize and validate the models. Clear-cutting simulations demonstrated that both models can effectively simulate soil C dynamics in the northern hardwood forest when adequately parameterized. The minimum postharvest SOC predicted by RothC occurred in postharvest year 14 and was within 1.5% of the observed minimum, which occurred in year 8. CENTURY predicted the postharvest minimum SOC to occur in year 45, at a value 6.9% greater than the observed minimum; the slow response of both models to disturbance suggests that they may overestimate the time required to reach new steady-state conditions. Four climate change scenarios were used to simulate future changes in SOC pools. Climate-change simulations predicted increases in SOC by as much as 7% at the end of this century, partially offsetting future CO(2) emissions. This sequestration was the product of enhanced forest productivity, and associated litter input to the soil, due to increased temperature, precipitation and CO(2) . The simulations also suggested that considerable losses of SOC (8-30%) could occur if forest vegetation at HBEF does not respond to changes in climate and CO(2) levels. Therefore, the source/sink behavior of temperate forest soils likely depends on the degree to which forest growth is stimulated by new climate and CO(2) conditions.

  1. Effect of nutrient management planning on crop yield, nitrate leaching and sediment loading in Thomas Brook watershed.

    PubMed

    Amon-Armah, Frederick; Yiridoe, Emmanuel K; Ahmad, Nafees H M; Hebb, Dale; Jamieson, Rob; Burton, David; Madani, Ali

    2013-11-01

    Government priorities on provincial Nutrient Management Planning (NMP) programs include improving the program effectiveness for environmental quality protection, and promoting more widespread adoption. Understanding the effect of NMP on both crop yield and key water-quality parameters in agricultural watersheds requires a comprehensive evaluation that takes into consideration important NMP attributes and location-specific farming conditions. This study applied the Soil and Water Assessment Tool (SWAT) to investigate the effects of crop and rotation sequence, tillage type, and nutrient N application rate on crop yield and the associated groundwater [Formula: see text] leaching and sediment loss. The SWAT model was applied to the Thomas Brook Watershed, located in the most intensively managed agricultural region of Nova Scotia, Canada. Cropping systems evaluated included seven fertilizer application rates and two tillage systems (i.e., conventional tillage and no-till). The analysis reflected cropping systems commonly managed by farmers in the Annapolis Valley region, including grain corn-based and potato-based cropping systems, and a vegetable-horticulture system. ANOVA models were developed and used to assess the effects of crop management choices on crop yield and two water-quality parameters (i.e., [Formula: see text] leaching and sediment loading). Results suggest that existing recommended N-fertilizer rate can be reduced by 10-25 %, for grain crop production, to significantly lower [Formula: see text] leaching (P > 0.05) while optimizing the crop yield. The analysis identified the nutrient N rates in combination with specific crops and rotation systems that can be used to manage [Formula: see text] leaching while balancing impacts on crop yields within the watershed.

  2. pH preference and avoidance responses of adult brook trout Salvelinus fontinalis and brown trout Salmo trutta.

    PubMed

    Fost, B A; Ferreri, C P

    2015-03-01

    The pH preferred and avoided by wild, adult brook trout Salvelinus fontinalis and brown trout Salmo trutta was examined in a series a laboratory tests using gradual and steep-gradient flow-through aquaria. The results were compared with those published for the observed segregation patterns of juvenile S. fontinalis and S. trutta in Pennsylvania streams. The adult S. trutta tested showed a preference for pH 4·0 while adult S. fontinalis did not prefer any pH within the range tested. Salmo trutta are not found in Pennsylvania streams with a base-flow pH < 5·8 which suggests that S. trutta prefer pH well above 4·0. Adult S. trutta displayed a lack of avoidance at pH below 5·0, as also reported earlier for juveniles. The avoidance pH of wild, adult S. fontinalis (between pH 5·5 and 6·0) and S. trutta (between pH 6·5 and 7·0) did not differ appreciably from earlier study results for the avoidance pH of juvenile S. fontinalis and S. trutta. A comparison of c.i. around these avoidance estimates indicates that avoidance pH is similar among adult S. fontinalis and S. trutta in this study. The limited overlap of c.i. for avoidance pH values for the two species, however, suggests that some S. trutta will display avoidance at a higher pH when S. fontinalis will not. The results of this study indicate that segregation patterns of adult S. fontinalis and S. trutta in Pennsylvania streams could be related to pH and that competition with S. trutta could be mediating the occurrence of S. fontinalis at some pH levels.

  3. The splicing factor U2AF65 stabilizes TRF1 protein by inhibiting its ubiquitin-dependent proteolysis

    SciTech Connect

    Kim, Jeonghee; Chung, In Kwon

    2014-01-17

    Highlights: •Identification of U2AF65 as a novel TRF1-interacting protein. •U2AF65 stabilizes TRF1 protein by inhibiting its ubiquitin-dependent proteolysis. •U2AF65 interferes with the interaction between TRF1 and Fbx4. •U2AF65 represents a new route for modulating TRF1 function at telomeres. -- Abstract: The human telomeric protein TRF1 is a component of the six-subunit protein complex shelterin, which provides telomere protection by organizing the telomere into a high-order structure. TRF1 functions as a negative regulator of telomere length by controlling the access of telomerase to telomeres. Thus, the cellular abundance of TRF1 at telomeres should be maintained and tightly regulated to ensure proper telomere function. Here, we identify U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor 65 (U2AF65), an essential pre-mRNA splicing factor, as a novel TRF1-interacting protein. U2AF65 interacts with TRF1 in vitro and in vivo and is capable of stabilizing TRF1 protein by inhibiting its ubiquitin-dependent proteolysis. We also found that U2AF65 interferes with the interaction between TRF1 and Fbx4, an E3 ubiquitin ligase for TRF1. Depletion of endogenous U2AF65 expression by short interfering RNA (siRNA) reduced the stability of endogenous TRF1 whereas overexpression of U2AF65 significantly extended the half-life of TRF1. These findings demonstrate that U2AF65 plays a critical role in regulating the level of TRF1 through physical interaction and ubiquitin-mediated proteolysis. Hence, U2AF65 represents a new route for modulating TRF1 function at telomeres.

  4. Level II scour analysis for Bridge 26 (ROYATH00540026) on Town Highway 54, crossing Broad Brook, Royalton, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.; Weber, Matthew A.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure ROYATH00540026 on Town Highway 54 crossing Broad Brook, Royalton, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in central Vermont. The 11.9-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover on the left bank upstream and downstream is pasture with trees and brush on the immediate banks. The right bank, upstream and downstream of the bridge, is forested. In the study area, Broad Brook has an incised, sinuous channel with a slope of approximately 0.01 ft/ft, an average channel top width of 37 ft and an average bank height of 4 ft. The channel bed material ranges from sand to boulders with a median grain size (D50) of 66.3 mm (0.218 ft). The geomorphic assessment at the time of the Level I site visit on April 13, 1995 and the Level II site visit on July 11, 1996, indicated that the reach was stable. The Town Highway 54 crossing of Broad Brook is a 29-ft-long, one-lane bridge consisting of one 24-foot steel-beam span with a timber deck (Vermont Agency of Transportation, written communication, March 23, 1995). The opening length of the structure parallel to the bridge face is 23.3 ft. The bridge is supported by a vertical, concrete face laid-up stone abutment with concrete wingwalls on the left and a laid-up stone

  5. Level II scour analysis for Bridge 23 (GLOVTH00410023) on Town Highway 41, crossing Sherburne Brook, Glover, Vermont

    USGS Publications Warehouse

    Olson, Scott A.; Boehmler, Erick M.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure GLOVTH00410023 on Town Highway 41 crossing Sherburne Brook, Glover, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in northern Vermont. The 2.57-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is primarily forest with small areas of lawn and a home on the right overbank and a gravel roadway along the upstream left bank. In the study area, Sherburne Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 33 ft and an average bank height of 6 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 57.3 mm (0.188 ft). The geomorphic assessment at the time of the Level I and Level II site visit on October 24, 1994, indicated that the reach was stable. The Town Highway 41 crossing of Sherburne Brook is a 24-ft-long, one-lane bridge consisting of one 21-foot steel-beam span with a timber deck (Vermont Agency of Transportation, written communication, August 4, 1994). The opening length of the structure parallel to the bridge face is 20.3 ft. The bridge is supported by vertical, granite block abutments. The channel is skewed approximately 55 degrees to the opening while the measured opening-skew-to-roadway is 30 degrees. One foot

  6. Level II scour analysis for Bridge 42 (HARDELMSTR0042) on Elm Street, crossing Cooper Brook, Hardwick, Vermont

    USGS Publications Warehouse

    Olson, Scott A.

    1996-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure HARDELMSTR0042 on Elm Street crossing Cooper Brook, Hardwick, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in north-central Vermont. The 16.6-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the overbanks are primarily grass covered with some brush along the immediate channel banks except the upstream right bank and overbank which is forested and the downstream left overbank which has a lumberyard. In the study area, Cooper Brook has a sinuous channel with a slope of approximately 0.005 ft/ft, an average channel top width of 50 ft and an average channel depth of 6 ft. The predominant channel bed materials are sand and gravel with a median grain size (D50) of 1.25 mm (0.00409 ft). The geomorphic assessment at the time of the Level I and Level II site visit on July 24, 1995, indicated that the reach was stable. The Elm Street crossing of Cooper Brook is a 39-ft-long, two-lane bridge consisting of one 37-foot concrete span (Vermont Agency of Transportation, written communication, March 17, 1995). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 40 degrees to the opening while the opening-skew-to-roadway is 45 degrees. On August 17, 1995 the site was revisited to investigate

  7. Level II scour analysis for Bridge 29 (HUNTTH00290029) on Town Highway 29, crossing Cobb Brook, Huntington, Vermont

    USGS Publications Warehouse

    Flynn, Robert H.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure HUNTTH00290029 on Town Highway 29 crossing Cobb Brook, Huntington, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in northwestern Vermont. The 4.16-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest upstream and downstream of the bridge. In the study area, Cobb Brook has an incised, straight channel with a slope of approximately 0.024 ft/ft, an average channel top width of 53 ft and an average bank height of 4 ft. The channel bed material ranges from gravel to bedrock with a median grain size (D50) of 112.0 mm (0.367 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 25, 1996, indicated that the reach was stable. The Town Highway 29 crossing of Cobb Brook is a 36-ft-long, one-lane bridge consisting of one 30-foot steel-beam span (Vermont Agency of Transportation, written communication, December 11, 1995) and a wooden deck. The opening length of the structure parallel to the bridge face is 27 ft.The bridge is supported by vertical, concrete abutments. The channel is skewed approximately 25 degrees to the opening while the opening-skew-to-roadway was measured to be 20 degrees. VTAOT records indicate an opening-skew-to-roadway of zero degrees. A scour hole 1.5 ft deeper than

  8. Level II scour analysis for Bridge 32 (HUNTTH00220032) on Town Highway 22, crossing Brush Brook, Huntington, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure HUNTTH00220032 on Town Highway 22 crossing Brush Brook, Huntington, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in central Vermont. The 5.7-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest except on the downstream right overbank which is pasture. In the study area, Brush Brook has an incised, straight channel with a slope of approximately 0.05 ft/ft, an average channel top width of 58 ft and an average bank height of 6 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 127 mm (0.416 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 25, 1996, indicated that the reach was stable. The Town Highway 22 crossing of Brush Brook is a 36-ft-long, one-lane bridge consisting of one 34-foot steel-beam span and a timber deck (Vermont Agency of Transportation, written communication, December 12, 1995). The opening length of the structure parallel to the bridge face is 35.7 ft. The bridge is supported by vertical, concrete abutments with wingwalls on the left. The channel is skewed approximately 50 degrees to the opening while the measured opening-skew-to-roadway is 15 degrees. A scour hole 1.0 ft deeper than the mean thalweg depth was

  9. Level II scour analysis for Bridge 33 (HUNTTH00220033) on Town Highway 22, crossing Brush Brook, Huntington, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.; Degnan, James R.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure HUNTTH00220033 on Town Highway 22 crossing Brush Brook, Huntington, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in central Vermont. The 8.65-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest except on the downstream right overbank which is pasture. In the study area, Brush Brook has an incised, straight channel with a slope of approximately 0.04 ft/ft, an average channel top width of 42 ft and an average bank height of 3 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 76.7 mm (0.252 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 26, 1996, indicated that the reach was stable. The Town Highway 22 crossing of Brush Brook is a 40-ft-long, two-lane bridge consisting of one 23.5-foot concrete slab span (Vermont Agency of Transportation, written communication, November 30, 1995). The opening length of the structure parallel to the bridge face is 36.9 ft. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 35 degrees to the opening while the opening-skew-to-roadway is 30 degrees. The scour protection measure at the site was type-2 stone fill (less than 36 inches diameter

  10. Level II scour analysis for Bridge 31 (HUNTTH00220031) on Town Highway 22, crossing Brush Brook, Huntington, Vermont

    USGS Publications Warehouse

    Flynn, Robert H.; Degnan, James R.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure HUNTTH00220031 on Town Highway 22 crossing Brush Brook, Huntington, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, obtained from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in west-central Vermont. The 5.01-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover consists of trees and brush. In the study area, Brush Brook has an incised, straight channel with a slope of approximately 0.06 ft/ft, an average channel top width of 44 ft and an average bank height of 4 ft. The channel bed material ranges from boulder to gravel with a median grain size (D50) of 107.0 mm (0.352 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 25, 1996, indicated that the reach was stable. The Town Highway 22 crossing of Brush Brook is a 34-ft-long, one-lane bridge consisting of one 30-foot steel I-beam span (Vermont Agency of Transportation, written communication, November 30, 1995). The opening length of the structure parallel to the bridge face is 31.2 ft. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 15 degrees to the opening while the computed opening-skew-to-roadway is 10 degrees. The VTAOT computed opening-skewto-roadway is 2 degrees. A scour hole 1.0 ft deeper than the mean thalweg depth was

  11. Level II scour analysis for Bridge 13 (PFRDTH00030013) on Town Highway 3, crossing Furnace Brook, Pittsford, Vermont

    USGS Publications Warehouse

    Flynn, Robert H.; Medalie, Laura

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure PFRDTH00030013 on Town Highway 3 crossing Furnace Brook, Pittsford, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Taconic section of the New England physiographic province in western Vermont. The 17.1-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is grass along the downstream right bank while the remaining banks are primarily forested. In the study area, Furnace Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 49 ft and an average channel depth of 4 ft. The predominant channel bed material ranges from gravel to bedrock with a median grain size (D50) of 70.2 mm (0.230 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 20, 1995, indicated that the reach was stable. The Town Highway 3 crossing of Furnace Brook is a 75-ft-long, two-lane bridge consisting of one 72-ft-long steel stringer span (Vermont Agency of Transportation, written communication, March 14, 1995). The bridge is supported by vertical, concrete abutments with spill-through slopes. The channel is skewed approximately 20 degrees to the opening while the opening-skew-to-roadway is 35 degrees. The opening-skew-to-roadway was determined from surveyed data collected at the bridge although, information provided from the

  12. Level II scour analysis for Bridge 40 (ANDOVT00110040) on State Route 11, crossing Lyman Brook, Andover, Vermont

    USGS Publications Warehouse

    Ivanoff, Michael A.; Burns, Ronda L.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure ANDOVT00110040 on State Route 11 crossing Lyman Brook, Andover, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in south-central Vermont. The 4.18-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is pasture while the immediate banks have dense woody vegetation. In the study area, Lyman Brook has an incised, straight channel with a slope of approximately 0.03 ft/ft, an average channel top width of 42 ft and an average bank height of 8 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 86.0 mm (0.282 ft). The geomorphic assessment at the time of the Level I and Level II site visit on September 9, 1996, indicated that the reach was stable. The State Route 11 crossing of Lyman Brook is a 28-ft-long, two-lane bridge consisting of one 27-foot concrete tee-beam span (Vermont Agency of Transportation, written communication, March 29, 1995). The opening length of the structure parallel to the bridge face is 24.8 ft. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 0 degrees to the opening while the opening-skew-to-roadway is 30 degrees. The scour protection measures at the site included type-2 stone fill (less than 36 inches

  13. Level II scour analysis for Bridge 21 (MORETH00010021) on Town Highway 1, crossing Cox Brook, Moretown, Vermont

    USGS Publications Warehouse

    Striker, Lora K.; Medalie, Laura

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure MORETH00010021 on Town Highway 1 crossing Cox Brook, Moretown, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in north-central Vermont. The 2.85-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is predominantly forested. In the study area, Cox Brook has an incised, sinuous channel with a slope of approximately 0.02 ft/ft, an average channel top width of 23 ft and an average bank height of 4 ft. The channel bed material ranges from gravel to cobble with a median grain size (D50) of 47.5 mm (0.156 ft). The geomorphic assessment at the time of the Level I and Level II site visit on July 18, 1996, indicated that the reach was stable. The Town Highway 1 crossing of Cox Brook is a 29-ft-long, two-lane bridge consisting of one 27-foot steel-beam span (Vermont Agency of Transportation, written communication, October 13, 1995). The opening length of the structure parallel to the bridge face is 24.8 ft. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 60 degrees to the opening while the measured opening-skew-to-roadway is 40 degrees. A scour hole 1.0 ft deeper than the mean thalweg depth was observed along the left abutment downstream during the Level I assessment. The

  14. Level II scour analysis for Bridge 23 (WALDTH00060023) on Town Highway 6, crossing Stannard Brook, Walden, Vermont

    USGS Publications Warehouse

    Ivanoff, Michael A.; Hammond, Robert E.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure WALDTH00060023 on Town Highway 6 crossing Stannard Brook, Walden, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in eastern Vermont. The 5.61-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the upstream surface cover is shrub and brushland with some trees. The downstream surface cover is forest. In the study area, Stannard Brook has an incised, straight channel with a slope of approximately 0.02 ft/ft, an average channel top width of 54 ft and an average bank height of 9 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 64.0 mm (0.210 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 8, 1995, indicated that the reach was stable. The Town Highway 6 crossing of Stannard Brook is a 59-ft-long (bottom width), two-lane pipe arch culvert consisting of one 22-foot corrugated plate pipe arch span (Vermont Agency of Transportation, written communication, March 28, 1995). The opening length of the structure parallel to the bridge face is 21.9 ft.The pipe arch is supported by vertical, concrete kneewalls. The channel is skewed approximately 10 degrees to the opening while the opening-skew-to-roadway is zero degrees. A scour hole 1.5 ft deeper than the mean

  15. Level II scour analysis for Bridge 4 (DANVTH00010004) on Town Highway 1, crossing Joes Brook, Danville, Vermont

    USGS Publications Warehouse

    Flynn, Robert H.; Boehmler, Erick M.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure DANVTH00010004 on Town Highway 1 crossing Joes Brook, Danville, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in northeastern Vermont. The 42.5-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is pasture along the upstream and downstream left banks with trees and brush along the immediate banks. The upstream and downstream right banks are forested. In the study area, Joes Brook has an incised, sinuous channel with a slope of approximately 0.02 ft/ft, an average channel top width of 68 ft and an average bank height of 5 ft. The channel bed material ranges from gravel to bedrock with a median grain size (D50) of 80.1 mm (0.263 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 22, 1995, indicated that the reach was stable. The Town Highway 1 crossing of Joes Brook is a 49-ft-long, two-lane bridge consisting of one 45-foot steel-beam span (Vermont Agency of Transportation, written communication, March 17, 1995). The opening length of the structure parallel to the bridge face is 45 ft.The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 15 degrees to the opening and the computed opening-skew-to-roadway is 15 degrees. A scour

  16. Level II scour analysis for Bridge 44 (CHESVT00110044) on State Route 11, crossing Andover Brook, Chester, Vermont

    USGS Publications Warehouse

    Ivanoff, Michael A.; Hammond, Robert E.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure CHESVT00110044 on State Route 11 crossing Andover Brook, Chester, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in southeastern Vermont. The 12.6-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is pasture with dense woody vegetation on the immediate banks except the downstream left bank of the bridge which is forested. In the study area, Andover Brook has an incised, meandering channel with a slope of approximately 0.02 ft/ft, an average channel top width of 74 ft and an average bank height of 8 ft. The channel bed material ranges from gravel to boulder with a median grain size (D50) of 83.6 mm (0.274 ft). The geomorphic assessment at the time of the Level I and Level II site visit on September 11, 1996, indicated that the reach was stable. The State Route 11 crossing of Andover Brook is a 58-ft-long, two-lane bridge consisting of one 56-foot concrete T-beam span (Vermont Agency of Transportation, written communication, March 29, 1995). The opening length of the structure parallel to the bridge face is 52.9 ft.The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 35 degrees to the opening while the opening-skew-to-roadway is 45 degrees. A scour hole 1.8 ft

  17. Level II scour analysis for Bridge 25 (JAMATH00010025) on Town Highway 1, crossing Ball Mountain Brook, Jamaica, Vermont

    USGS Publications Warehouse

    Burns, Ronda L.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure JAMATH00010025 on Town Highway 1 crossing Ball Mountain Brook, Jamaica, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in southern Vermont. The 29.5-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest except on the downstream right bank which is pasture with some trees along the channel. In the study area, Ball Mountain Brook has an incised, straight channel with a slope of approximately 0.021 ft/ft, an average channel top width of 86 ft and an average bank height of 9 ft. The channel bed material ranges from gravel to bedrock with a median grain size (D50) of 222 mm (0.727 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 13, 1996, indicated that the reach was stable. The Town Highway 1 crossing of Ball Mountain Brook is a 78-ft-long, two-lane bridge consisting of one 75-foot steel-beam span (Vermont Agency of Transportation, written communication, March 29, 1995). The opening length of the structure parallel to the bridge face is 73 ft. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 30 degrees to the opening while the opening-skew-to-roadway is 30 degrees. A scour hole 1.0 ft deeper than the mean thalweg depth

  18. Level II scour analysis for Bridge 48 (FFIETH00300048) on Town Highway 30, crossing Wanzer Brook, Fairfield, Vermont

    USGS Publications Warehouse

    Flynn, Robert H.; Boehmler, Erick M.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure FFIETH00300048 on Town Highway 30 crossing Wanzer Brook, Fairfield, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in northwestern Vermont. The 6.78-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover upstream of the bridge and on the downstream right bank is primarily pasture. The downstream left bank is forested. In the study area, Wanzer Brook has an incised, straight channel with a slope of approximately 0.03 ft/ft, an average channel top width of 65 ft and an average bank height of 5 ft. The channel bed material is cobble with a median grain size (D50) of 111 mm (0.364 ft). The geomorphic assessment at the time of the Level I and Level II site visit on July 11, 1995, indicated that the reach was stable. The Town Highway 30 crossing of Wanzer Brook is a 31-ft-long, two-lane bridge consisting of one 28-foot steel-beam span (Vermont Agency of Transportation, written communication, March 8, 1995). The opening length of the structure parallel to the bridge face is 26 ft.The bridge is supported by vertical stone wall abutments with concrete caps and “kneewall” footings. The channel is skewed approximately 25 degrees to the opening while the measured opening-skew-to-roadway is 20 degrees. A scour hole 1.5 ft deeper than

  19. Level II scour analysis for Bridge 41 (WODSTH00750041) on Town Highway 75, crossing Happy Valley Brook, Woodstock, Vermont

    USGS Publications Warehouse

    Olson, Scott A.

    1996-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure WODSTH00750041 on town highway 75 crossing Happy Valley Brook, Woodstock, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province of east-central Vermont. The 3.45-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is brush with scattered trees. In the study area, Happy Valley Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 23 ft and an average channel depth of 5 ft. The predominant channel bed materials are gravel and cobble with a median grain size (D50) of 82.8 mm (0.272 ft). The geomorphic assessment at the time of the Level II site visits on September 13, 1994 and December 14, 1994, indicated that the reach was degrading. Five logs are embedded across the channel under the bridge in an attempt to prevent further degradation (see Figures 5 and 6). The town highway 75 crossing of Happy Valley Brook is a 27-ft-long, two-lane bridge consisting of one 25-foot steel-beam span. The clear span is 17 ft. (Vermont Agency of Transportation, written communication, August 3, 1994). The bridge is supported by vertical, stone abutments with wingwalls. The channel is skewed approximately 40 degrees to the opening and the opening-skew-to-roadway is also 40 degrees. Additional

  20. Level II scour analysis for Bridge 5 (DUMMVT00300005) on State Route 30, crossing Stickney Brook, Dummerston, Vermont

    USGS Publications Warehouse

    Ivanoff, Michael A.

    1997-01-01

    This report provides the results of a detailed Level II analysis of scour potential at structure DUMMVT00300005 on State Route 30 crossing Stickney Brook, Dummerston, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in southeastern Vermont. The 6.31-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest and brush. In the study area, Stickney Brook has an incised, straight channel with a slope of approximately 0.04 ft/ft, an average channel top width of 80 ft and an average bank height of 7 ft. The channel bed material is predominantly cobble with a median grain size (D50) of 80.3 mm (0.264 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 12, 1996, indicated that the reach was aggrading. The State Route 30 crossing of Stickney Brook is a 84-ft-long, two-lane bridge consisting of one 82-foot steel-beam span (Vermont Agency of Transportation, written communication, March 30, 1995). The opening length of the structure parallel to the bridge face is 79.7 ft. The bridge is supported by vertical, concrete abutments with spill-through embankments. The channel is skewed approximately 5 degrees to the opening while the opening-skew-to-roadway is 0 degrees. A scour hole 0.5 ft deeper than the mean thalweg depth was observed along the toe of the right spill-through slope during