Science.gov

Sample records for affect biogeochemical cycles

  1. Biogeochemical Cycling

    NASA Technical Reports Server (NTRS)

    Bebout, Brad; Fonda, Mark (Technical Monitor)

    2002-01-01

    This lecture will introduce the concept of biogeochemical cycling. The roles of microbes in the cycling of nutrients, production and consumption of trace gases, and mineralization will be briefly introduced.

  2. Biogeochemical Cycles in Degraded Lands

    NASA Technical Reports Server (NTRS)

    Davidson, Eric A.; Vieira, Ima Celia G.; ReisdeCarvalho, Claudio Jose; DeanedeAbreuSa, Tatiana; deSouzaMoutinho, Paulo R.; Figueiredo, Ricardo O.; Stone, Thomas A.

    2004-01-01

    The objectives of this project were to define and describe the types of landscapes that fall under the broad category of "degraded lands" and to study biogeochemical cycles across this range of degradation found in secondary forests. We define degraded land as that which has lost part of its capacity of renovation of a productive ecosystem, either in the context of agroecosystems or as native communities of vegetation. This definition of degradation permits evaluation of biogeochemical constraints to future land uses.

  3. Biogeochemical Cycles in Degraded Lands

    NASA Technical Reports Server (NTRS)

    Davidson, Eric A.; Vieira, Ima Celia G.; ReisdeCarvalho, Claudio Jose; DeaneDeAbreuSa, Tatiana; deSpozaMoutinho, Paulo R.; Figueiredo, Ricardo O.; Stone, Thomas A.

    2003-01-01

    The objectives of this project were to define and describe the types of landscapes that fall under the broad category of "degraded lands" and to study biogeochemical cycles across this range of degradation found in secondary forests. We define degraded land as that which has lost part of its capacity of renovation of a productive ecosystem, either in the context of agroecosystems or as native communities of vegetation. This definition of degradation permits evaluation of biogeochemical constraints to future land uses.

  4. A biogeochemical cycle for aluminium?

    PubMed

    Exley, Christopher

    2003-09-15

    The elaboration of biogeochemical cycles for elements which are known to be essential for life has enabled a broad appreciation of the homeostatic mechanisms which underlie element essentiality. In particular they can be used effectively to identify any part played by human activities in element cycling and to predict how such activities might impact upon the lithospheric and biospheric availability of an element in the future. The same criteria were the driving force behind the construction of a biogeochemical cycle for aluminium, a non-essential element which is a known ecotoxicant and a suspected health risk in humans. The purpose of this exercise was to examine the concept of a biogeochemical cycle for aluminium and not to review the biogeochemistry of this element. The cycle as presented is rudimentary and qualitative though, even in this nascent form, it is informative and predictive and, for these reasons alone, it is deserving of future quantification. A fully fledged biogeochemical cycle for aluminium should explain the biospheric abundance of this element and whether we should expect its (continued) active involvement in biochemical evolution.

  5. Archaea in biogeochemical cycles.

    PubMed

    Offre, Pierre; Spang, Anja; Schleper, Christa

    2013-01-01

    Archaea constitute a considerable fraction of the microbial biomass on Earth. Like Bacteria they have evolved a variety of energy metabolisms using organic and/or inorganic electron donors and acceptors, and many of them are able to fix carbon from inorganic sources. Archaea thus play crucial roles in the Earth's global geochemical cycles and influence greenhouse gas emissions. Methanogenesis and anaerobic methane oxidation are important steps in the carbon cycle; both are performed exclusively by anaerobic archaea. Oxidation of ammonia to nitrite is performed by Thaumarchaeota. They represent the only archaeal group that resides in large numbers in the global aerobic terrestrial and marine environments on Earth. Sulfur-dependent archaea are confined mostly to hot environments, but metal leaching by acidophiles and reduction of sulfate by anaerobic, nonthermophilic methane oxidizers have a potential impact on the environment. The metabolisms of a large number of archaea, in particular those dominating the subsurface, remain to be explored.

  6. Biogeochemical cycling and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.

    1985-01-01

    Research is underway at the NASA Ames Research Center that is concerned with aspects of the nitrogen cycle in terrestrial ecosystems. An interdisciplinary research group is attempting to correlate nitrogen transformations, processes, and productivity with variables that can be remotely sensed. Recent NASA and other publications concerning biogeochemical cycling at global scales identify attributes of vegetation that could be related or explain the spatial variation in biologically functional variables. These functional variables include net primary productivity, annual nitrogen mineralization, and possibly the emission rate of nitrous oxide from soils.

  7. Biogeochemical cycling and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.; Mouat, D. A.

    1984-01-01

    The present investigation is concerned with the role of remote sensing in the analysis of biochemical cycling. A general review is provided of the interest of NASA in biochemical cycling, taking into account an assessment of the state and dynamics of the pools and fluxes of four major elements (carbon, nitrogen, phosphorus, sulfur), an understanding of the coupling and interaction of the biosphere and the atmosphere, and an understanding of the biosphere and the oceans. Attention is given to biogeochemical cycling science issues, the potential remote sensing role, the vegetation type, aspects of vegetation structure, the leaf area index, the canopy height, functional relationships, environmental and soil variables, questions of experimental design, sampling sites and ground data, and radiometric data and analysis.

  8. Biogeochemical Cycles of Carbon and Sulfur

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, D. (Technical Monitor)

    2002-01-01

    The elements carbon (C) and sulfur (S) interact with each other across a network of elemental reservoirs that are interconnected by an array of physical, chemical and biological processes. These networks are termed the biogeochemical C and S cycles. The compounds of C are highly important, not only as organic matter, but also as atmospheric greenhouse gases, pH buffers in seawater, oxidation-reduction buffers virtually everywhere, and key magmatic constituents affecting plutonism and volcanism. The element S assumes important roles as an oxidation-reduction partner with C and Fe in biological systems, as a key constituent in magmas and volcanic gases, and as a major influence upon pH in certain environments. This presentation describes the modern biogeochemical C and S cycles. Measurements are described whereby stable isotopes can help to infer the nature and quantitative significance of biological and geological processes involved in the C and S cycles. This lecture also summarizes the geological and climatologic aspects of the ancient C and S cycles, as well as the planetary and extraterrestrial processes that influenced their evolution over millions to billions of years.

  9. Searching for Biogeochemical Cycles on Mars

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.

    1997-01-01

    The search for life on Mars clearly benefits from a rigorous, yet broad, definition of life that compels us to consider all possible lines of evidence for a martian biosphere. Recent studies in microbial ecology illustrate that the classic definition of life should be expanded beyond the traditional definition of a living cell. The traditional defining characteristics of life are threefold. First, life is capable of metabolism, that is, it performs chemical reactions that utilize energy and also synthesize its cellular constituents. Second, life is capable of self-replication. Third, life can evolve in order to adapt to environmental changes. An expanded, ecological definition of life also recognizes that life is a community of organisms that must interact with their nonliving environment through processes called biogeochemical cycles. This regenerative processing maintains, in an aqueous conditions, a dependable supply of nutrients and energy for growth. In turn, life can significantly affect those processes that control the exchange of materials between the atmosphere, ocean, and upper crust. Because metabolic processes interact directly with the environment, they can alter their surroundings and thus leave behind evidence of life. For example, organic matter is produced from single-carbon-atom precursors for the biosynthesis of cellular constituents. This leads to a reservoir of reduced carbon in sediments that, in turn, can affect the oxidation state of the atmosphere. The harvesting of chemical energy for metabolism often employs oxidation-reduction reactions that can alter the chemistry and oxidation state of the redox-sensitive elements carbon, sulfur, nitrogen, iron, and manganese. Have there ever been biogeochemical cycles on Mars? Certain key planetary processes can offer clues. Active volcanism provides reduced chemical species that biota can use for organic synthesis. Volcanic carbon dioxide and methane can serve as greenhouse gases. Thus the

  10. Managing biogeochemical cycles to reduce greenhouse gases

    SciTech Connect

    Post, Wilfred M; Venterea, Rodney

    2012-01-01

    This special issue focuses on terrestrial biogeochemical cycles as they relate to North America-wide budgeting and future projection of biogenic greenhouse gases (GHGs). Understanding the current magnitude and providing guidance on the future trajectories of atmospheric concentrations of these gases requires investigation of their (i) biogeochemical origins, (ii) response to climate feedbacks and other environmental factors, and (iii) susceptibility to management practices. This special issue provides a group of articles that present the current state of continental scale sources and sinks of biogenic GHGs and the potential to better manage them in the future.

  11. Accumulation of nutrients in soils affected by perennial colonies of piscivorous birds with reference to biogeochemical cycles of elements.

    PubMed

    Ligeza, Slawomir; Smal, Halina

    2003-07-01

    The accumulation of selected N, K, and P forms in soils within three perennial colonies of black cormorant (Phalacrocorax carbo sinensis) and grey heron (Ardea cinerea) located in northern and eastern Poland were investigated. Soil samples were collected beneath the nests from the most representative for each colony plots. Control samples were taken outside the colonies within sites adjacent to the nesting areas but not affected by bird excrement. From each genetic horizon (20 horizons) in soil profiles, a cumulative sample of about 25-30 kg of soil was taken for analysis. Nitrogen by Kjeldahl, ammonium ions (N(NH(4))), nitrates (N(NO(3))), exchangeable potassium (K(ex)), available potassium (K(av)), and available phosphorus (P(av)) were determined. The soils affected by birds demonstrated a very strong enrichment with N, K, and P in comparison to the control sites, especially in the topsoil horizons. The content of N(NH(4)) in individual soil horizons from the colonies was from 1.7 to 10.1 times higher than the respective control, N(NO(3)) from 2.9 to 215.7, K(ex) from 2.0 to 35.1, K(av) from 1.1 to 48.1, and P(av) in the range from 2.4 to 53.0 times. The highest increment of chemical elements was noticeable in the soils of territories inhabited by cormorants and the least in forest occupied by herons. Some relationships between soil texture and accumulation of biogenic nutrients were determined. Clay loam soil showed the greatest enrichment with analysed forms of elements with the exception of N(NH(4)).

  12. Aerosol indirect effect on biogeochemical cycles and climate.

    PubMed

    Mahowald, Natalie

    2011-11-11

    The net effect of anthropogenic aerosols on climate is usually considered the sum of the direct radiative effect of anthropogenic aerosols, plus the indirect effect of these aerosols through aerosol-cloud interactions. However, an additional impact of aerosols on a longer time scale is their indirect effect on climate through biogeochemical feedbacks, largely due to changes in the atmospheric concentration of CO(2). Aerosols can affect land and ocean biogeochemical cycles by physical forcing or by adding nutrients and pollutants to ecosystems. The net biogeochemical effect of aerosols is estimated to be equivalent to a radiative forcing of -0.5 ± 0.4 watts per square meter, which suggests that reaching lower carbon targets will be even costlier than previously estimated.

  13. Biogeochemical cycling in the Strait of Georgia.

    PubMed

    Johannessen, S C; Macdonald, R W; Burd, B; van Roodselaar, A

    2008-12-01

    The papers in this special issue present the results of a five-year project to study sedimentary biogeochemical processes in the Strait of Georgia, with special emphasis on the near-field of a large municipal outfall. Included in this special issue are overviews of the sedimentology, benthic biology, status of siliceous sponge reefs and distribution of organic carbon in the water column. Other papers address the cycling of contaminants (PCBs, PBDEs) and redox metals in the sediment, a method to map the extent of the influence of municipal effluent from staining on benthic bivalves, and the relationships among geochemical conditions and benthic abundance and diversity. The latter set of papers addresses the role of municipal effluent as a pathway of organic carbon and other contaminants into the Strait of Georgia and the effect of the effluent on benthic geochemistry and biology. PMID:19022498

  14. Estimating impacts of lichens and bryophytes on global biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Porada, Philipp; Weber, Bettina; Elbert, Wolfgang; Pöschl, Ulrich; Kleidon, Axel

    2014-02-01

    Lichens and bryophytes may significantly affect global biogeochemical cycles by fixation of nitrogen and biotic enhancement of surface weathering rates. Most of the studies suggesting these effects, however, are either conceptual or rely on upscaling of regional estimates to obtain global numbers. Here we use a different method, based on estimates of net carbon uptake, to quantify the impacts of lichens and bryophytes on biogeochemical cycles at the global scale. We focus on three processes, namely, nitrogen fixation, phosphorus uptake, and chemical weathering. Our estimates have the form of potential rates, which means that we quantify the amount of nitrogen and phosphorus needed by the organisms to build up biomass, also accounting for resorption and leaching of nutrients. Subsequently, we use potential phosphorus uptake on bare ground to estimate chemical weathering by the organisms, assuming that they release weathering agents to obtain phosphorus. The predicted requirement for nitrogen ranges from 3.5 to 34 Tgyr-1 and for phosphorus it ranges from 0.46 to 4.6 Tgyr-1. Estimates of chemical weathering are between 0.058 and 1.1 km3 yr-1 of rock. These values seem to have a realistic order of magnitude, and they support the notion that lichens and bryophytes have the potential to play an important role for biogeochemical cycles.

  15. Redox chemistry in the phosphorus biogeochemical cycle

    NASA Astrophysics Data System (ADS)

    Pasek, Matthew A.; Sampson, Jacqueline M.; Atlas, Zachary

    2014-10-01

    The element phosphorus (P) controls growth in many ecosystems as the limiting nutrient, where it is broadly considered to reside as pentavalent P in phosphate minerals and organic esters. Exceptions to pentavalent P include phosphine-PH3-a trace atmospheric gas, and phosphite and hypophosphite, P anions that have been detected recently in lightning strikes, eutrophic lakes, geothermal springs, and termite hindguts. Reduced oxidation state P compounds include the phosphonates, characterized by C-P bonds, which bear up to 25% of total organic dissolved phosphorus. Reduced P compounds have been considered to be rare; however, the microbial ability to use reduced P compounds as sole P sources is ubiquitous. Here we show that between 10% and 20% of dissolved P bears a redox state of less than +5 in water samples from central Florida, on average, with some samples bearing almost as much reduced P as phosphate. If the quantity of reduced P observed in the water samples from Florida studied here is broadly characteristic of similar environments on the global scale, it accounts well for the concentration of atmospheric phosphine and provides a rationale for the ubiquity of phosphite utilization genes in nature. Phosphine is generated at a quantity consistent with thermodynamic equilibrium established by the disproportionation reaction of reduced P species. Comprising 10-20% of the total dissolved P inventory in Florida environments, reduced P compounds could hence be a critical part of the phosphorus biogeochemical cycle, and in turn may impact global carbon cycling and methanogenesis.

  16. Redox chemistry in the phosphorus biogeochemical cycle.

    PubMed

    Pasek, Matthew A; Sampson, Jacqueline M; Atlas, Zachary

    2014-10-28

    The element phosphorus (P) controls growth in many ecosystems as the limiting nutrient, where it is broadly considered to reside as pentavalent P in phosphate minerals and organic esters. Exceptions to pentavalent P include phosphine--PH3--a trace atmospheric gas, and phosphite and hypophosphite, P anions that have been detected recently in lightning strikes, eutrophic lakes, geothermal springs, and termite hindguts. Reduced oxidation state P compounds include the phosphonates, characterized by C-P bonds, which bear up to 25% of total organic dissolved phosphorus. Reduced P compounds have been considered to be rare; however, the microbial ability to use reduced P compounds as sole P sources is ubiquitous. Here we show that between 10% and 20% of dissolved P bears a redox state of less than +5 in water samples from central Florida, on average, with some samples bearing almost as much reduced P as phosphate. If the quantity of reduced P observed in the water samples from Florida studied here is broadly characteristic of similar environments on the global scale, it accounts well for the concentration of atmospheric phosphine and provides a rationale for the ubiquity of phosphite utilization genes in nature. Phosphine is generated at a quantity consistent with thermodynamic equilibrium established by the disproportionation reaction of reduced P species. Comprising 10-20% of the total dissolved P inventory in Florida environments, reduced P compounds could hence be a critical part of the phosphorus biogeochemical cycle, and in turn may impact global carbon cycling and methanogenesis. PMID:25313061

  17. Terrestrial ecosystems and the global biogeochemical silica cycle

    NASA Astrophysics Data System (ADS)

    Conley, Daniel J.

    2002-12-01

    Most research on the global Si cycle has focused nearly exclusively on weathering or the oceanic Si cycle and has not explored the complexity of the terrestrial biogeochemical cycle. The global biogeochemical Si cycle is of great interest because of its impact on global CO2 concentrations through the combined processes of weathering of silicate minerals and transfer of CO2 from the atmosphere to the lithosphere. A sizable pool of Si is contained as accumulations of amorphous silica, or biogenic silica (BSi), in living tissues of growing plants, known as phytoliths, and, after decomposition of organic material, as remains in the soil. The annual fixation of phytolith silica ranges from 60-200 Tmol yr-1 and rivals that fixed in the oceanic biogeochemical cycle (240 Tmol yr-1). Internal recycling of the phytolith pool is intense with riverine fluxes of dissolved silicate to the oceans buffered by the terrestrial biogeochemical Si cycle, challenging the ability of weathering models to predict rates of weathering and consequently, changes in global climate. Consideration must be given to the influence of the terrestrial BSi pool on variations in the global biogeochemical Si cycle over geologic time and the influence man has had on modifying both the terrestrial and aquatic biogeochemical cycles.

  18. The biogeochemical iron cycle and astrobiology

    NASA Astrophysics Data System (ADS)

    Schröder, Christian; Köhler, Inga; Muller, Francois L. L.; Chumakov, Aleksandr I.; Kupenko, Ilya; Rüffer, Rudolf; Kappler, Andreas

    2016-12-01

    Biogeochemistry investigates chemical cycles which influence or are influenced by biological activity. Astrobiology studies the origin, evolution and distribution of life in the universe. The biogeochemical Fe cycle has controlled major nutrient cycles such as the C cycle throughout geological time. Iron sulfide minerals may have provided energy and surfaces for the first pioneer organisms on Earth. Banded iron formations document the evolution of oxygenic photosynthesis. To assess the potential habitability of planets other than Earth one looks for water, an energy source and a C source. On Mars, for example, Fe minerals have provided evidence for the past presence of liquid water on its surface and would provide a viable energy source. Here we present Mössbauer spectroscopy investigations of Fe and C cycle interactions in both ancient and modern environments. Experiments to simulate the diagenesis of banded iron formations indicate that the formation of ferrous minerals depends on the amount of biomass buried with ferric precursors rather than on the atmospheric composition at the time of deposition. Mössbauer spectra further reveal the mutual stabilisation of Fe-organic matter complexes against mineral transformation and decay of organic matter into CO2. This corresponds to observations of a `rusty carbon sink' in modern sediments. The stabilisation of Fe-organic matter complexes may also aid transport of particulate Fe in the water column while having an adverse effect on the bioavailability of Fe. In the modern oxic ocean, Fe is insoluble and particulate Fe represents an important source. Collecting that particulate Fe yields small sample sizes that would pose a challenge for conventional Mössbauer experiments. We demonstrate that the unique properties of the beam used in synchrotron-based Mössbauer applications can be utilized for studying such samples effectively. Reactive Fe species often occur in amorphous or nanoparticulate form in the environment and

  19. Biogeochemical C and N cycles in urban soils.

    PubMed

    Lorenz, Klaus; Lal, Rattan

    2009-01-01

    The percentage of urban population is projected to increase drastically. In 2030, 50.7 to 86.7% of the total population in Africa and Northern America may live in urban areas, respectively. The effects of the attendant increases in urban land uses on biogeochemical C and N cycles are, however, largely unknown. Biogeochemical cycles in urban ecosystems are altered directly and indirectly by human activities. Direct effects include changes in the biological, chemical and physical soil properties and processes in urban soils. Indirect effects of urban environments on biogeochemical cycles may be attributed to the introductions of exotic plant and animal species and atmospheric deposition of pollutants. Urbanization may also affect the regional and global atmospheric climate by the urban heat island and pollution island effect. On the other hand, urban soils have the potential to store large amounts of soil organic carbon (SOC) and, thus, contribute to mitigating increases in atmospheric CO(2) concentrations. However, the amount of SOC stored in urban soils is highly variable in space and time, and depends among others on soil parent material and land use. The SOC pool in 0.3-m depth may range between 16 and 232 Mg ha(-1), and between 15 and 285 Mg ha(-1) in 1-m depth. Thus, depending on the soil replaced or disturbed, urban soils may have higher or lower SOC pools, but very little is known. This review provides an overview of the biogeochemical cycling of C and N in urban soils, with a focus on the effects of urban land use and management on soil organic matter (SOM). In view of the increase in atmospheric CO(2) and reactive N concentrations as a result of urbanization, urban land use planning must also include strategies to sequester C in soil, and also enhance the N sink in urban soils and vegetation. This will strengthen soil ecological functions such as retention of nutrients, hazardous compounds and water, and also improve urban ecosystem services by promoting

  20. Drought-induced Changes in Dryland Soil Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Belnap, J.; Darrouzet-Nardi, A.; Duniway, M.; Ferrenberg, S.; Hoover, D. L.; Reed, S.

    2015-12-01

    Approximately 41% of Earth´s terrestrial surface consists of drylands and they are an important biome on all continents. Although dryland biota would be expected to be drought adapted, they can be surprisingly vulnerable to extended dry periods with subsequent consequences for biogeochemical cycles. Biological soil crusts, constituting up to 70% of the living cover in these regions, are important in these cycles. They fix both N and C, providing a significant percentage of regional and global inputs. However, extended drought reduces both types of inputs, as biocrusts are only metabolically active when wet, yet losses continue even when soils are dry. In addition, extended droughts can result in their mortality. The amount of net soil C exchange of biocrusted soils is controversial, but in SE Utah, soil C uptake only occurred when only when soils were wet. As soils are infrequently wet, annual balances were negative during the 2 year study and with future extended droughts or increased temperatures that reduce soil moisture, these losses will become even greater. As with C, N fixation also requires biocrusts be wet and thus inputs decline with extended drought or higher temperatures that both reduce input and result in lichen and cyanobacterial mortality. And similarly, N losses continue even when soils are dry. Loss of biocrust mosses can profoundly alter N cycles. Desert plants are also affected by drought: in plots where experimental drought was imposed, plants had lower photosynthetic rates and higher leaf C:N, which will likely affect productivity and decomposition rates and thus have further impacts on soil biogeochemical cycles.

  1. Biogeochemical cycles: Interactions in global metabolism

    NASA Technical Reports Server (NTRS)

    Moore, B., III; Morowitz, H.; Dastoor, M. N.

    1984-01-01

    A science that chooses the globe as it fundamental biogeophysical unit forces extraordinary conceptual difficulties. The roles of energy flow, matter cycles, carbon cycle, air pollution, global effects, air water interactions are discussed.

  2. Factors Influencing Phosphorous Cycling in Biogeochemical 'Hot Spots'

    NASA Astrophysics Data System (ADS)

    Saia, S. M.; Walter, M. T.; Buda, A. R.; Carrick, H. J.; Regan, J. M.

    2015-12-01

    Anthropogenic alteration of the phosphorus (P) cycle has led to subsequent soil and water quality issues. For example, P build up in soils due to historic fertilizer application may become biologically available and exacerbate eutrophication and anoxia in nearby water bodies. In the humid Northeastern United States, storm runoff transports P and also stimulates biogeochemical processes, these locations are termed biogeochemical 'hot spots'. Many studies have looked at nitrogen and carbon cycling in biogeochemical hot spots but few have focused on P. We hypothesize the periodic wetting and drying of biogeochemical hot spots promotes a combination of abiotic and biotic processes that influence the mobility of P. To test this hypothesis, we took monthly soil samples (5 cm deep) from May to October in forest, pasture, and cropped land near Ithaca, NY. In-situ measurements taken with each sample included volumetric soil moisture and soil temperature. We also analyzed samples for 'runoff generated' phosphate, nitrate, and sulfate (from 0.01 M CaCl2 extraction), Fe(II), percent organic matter, pH, as well as oxalate extractable and total P, Al, and Fe. We used linear mixed effects models to test how runoff generated phosphate concentrations vary with soil moisture and whether other environmental factors strengthen/weaken this relationship. The knowledge gained from this study will improve our understanding of P cycling in biogeochemical hot spots and can be used to improve the effectiveness of agricultural management practices in the Northeastern United States.

  3. PHOTOREACTIONS IN SURFACE WATERS AND THEIR ROLE IN BIOGEOCHEMICAL CYCLES

    EPA Science Inventory

    During the past decade significant interest has developed in the influence of photochemical reactions on biogeochemical cycles in surface waters of lakes and the sea. A major portion of recent research on these photoreactions has focused on the colored component of dissolved org...

  4. Effects of Privately Owned Land Management Practices on Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Getson, J. M.; Hutyra, L.; Short, A. G.; Templer, P. H.; Kittredge, D.

    2014-12-01

    An increasing fraction of the global population lives in urban settings. Understanding how the human-natural system couple and decouple biogeochemical cycles across urbanization gradients is crucial for human health and environmental sustainability. Natural processes of nutrient deposition, export, uptake, and internal cycling can be disrupted by human activities. Residential landscape management (e.g. composting, leaf litter collection, fertilizer application) interrupts these natural biogeochemical cycles; therefore, it is key to characterize these practices and their impacts. This study looks at private land management practices along a rural to urban gradient in Boston, Massachusetts. We used a mail survey instrument coupled with biogeochemical measurements and remote sensing derived estimates of aboveground biomass to estimate biogeochemical modifications associated with residential landscape management practices. We find parcel size influences management behavior, management practices differ for leaf litter and lawn clippings, and fertilizer application is unrelated to parcel size or degree of urban-ness. These management practices result in nutrient redistribution that differs with residential characteristics.

  5. Inland Aquatic Resources and Biogeochemical Cycles

    NASA Technical Reports Server (NTRS)

    Melack, J. M.

    1984-01-01

    The biosphere is the entire planetary system that includes, sustains and is influenced by life. The central issue of the science of the biosphere is the extent to which the Earth's surface, atmosphere and hydrosphere is the result of biological rather than abiotic processes. Space science and technology accelerates the understanding of global biological processes by providing repetive synoptic observations on large spatial scales once the relationships between the processes and the remotely sensed quantities are established. Especially promising applications of space technology are the measurement of biological productivity and portions of geochemical cycles in aquatic ecosystems and the evaluation and management of the quality of freshwater resources.

  6. Eddy Permitting Simulations of Biogeochemical Cycles in the Global Ocean

    NASA Astrophysics Data System (ADS)

    Sumata, H.; Hashioka, T.; Suzuki, T.; Yamanaka, Y.

    2008-12-01

    A 3D ecosystem-biogeochemical model simulation for the global domain is performed in order to investigate variability of oceanic ecosystem on time scales of years to decades. The model has a horizontal resolution of 1/4 times 1/6 degrees and 51 vertical levels, covering the entire domain of the world ocean. The ecosystem- biogeochemical part of the model is based on NEMURO (North Pacific Ecosystem Model Used for Regional Oceanography), and is coupled with CCSR Ocean Component Model (COCO) version 4.3 by an offline technique. The physical part of the model is driven by the inter-annual forcing by common ocean-ice reference experiments (CORE) data from 1958 to 2004, and reasonably simulates inter-annual to decadal variabilities of ocean conditions related to biogeochemical cycles. These properties of the physical model with its eddying filed enable us to reproduce the realistic distributions of nutrients and plankton productions. Comparisons with historical station data show that the model also reasonably simulates the observed variabilities of ecosystem on time scales of years to decades. In particular, the model captures the transitions of biogeochemical cycles associated with regime shifts.

  7. Will a changed element composition of rainfall - due to climate change - affect the biogeochemical cycle of montane forest soils in Southern Ecuador?

    NASA Astrophysics Data System (ADS)

    Wullaert, H.; Peña, J. L.; González, E.; Valarezo, C.; Wilcke, W.

    2009-04-01

    Increasing biomass burning, fertilization and industrialization in tropical areas will generally lead to a greater N deposition in the Tropics including the northern Andean forests in the coming decades. In previous work, we detected extra Ca deposition from the atmosphere in the northern Andes originating from Sahara dust during a pronounced la Niña event. Therefore, the possible shortening of the El Niño Southern Oscillation might result in more frequent Ca input into the northern Andean forests. We quantify biogeochemical processes in a tropical montane forest in southern Ecuador at 2000 m a.s.l. in response to N and Ca additions to simulate elevated N and Ca deposition from the atmosphere. Four replicate experimental plots under native forest were fertilized with either 50 kg N or 10 kg Ca ha-1 y-1 with urea (46%) and CaCl2.2H2O, respectively, distributed between two dates per year and the effects were compared with non-fertilized control plots. We collected litter percolate with zero-tension lysimeters, soil solution with suction cups at 0.15 and 0.30 m, rainfall and throughfall. Samples were analyzed for concentrations of total N, nitrate, ammonium, dissolved organic nitrogen (DON) and Ca. Two months after the first fertilization, nitrogen addition mainly stimulates microbial activity where in a priming effect ammonium is transferred to nitrate and soil organic matter is mineralised, resulting in increased DON concentrations. This stimulation would also release other nutrients than N which in turn enhance tree growth. Total nitrogen concentration in litter leachate increased slightly after N fertilization from 1.75 mg/l to 1.8 mg/l, which represents about 1.5% of the total applied N. In contrast, the low Ca concentrations in litter leachate doubled from 0.10 mg/l to 0.20 mg/l after Ca addition, which on yearly basis would represent about 15% of the total applied Ca. From these preliminary results we conclude that (i) both added N and Ca are net retained in

  8. Mercury biogeochemical cycling in a stratified estuary

    SciTech Connect

    Mason, R.P.; Fitzgerald, W.F. ); Hurley, J. ); Hanson, A.K. Jr.; Donaghay, P.L.; Sieburth, J.M. )

    1993-09-01

    Total Hg in the permanently stratified Pettaquamscutt estuary was <25 pM throughout the water column, even in highly sulfidic bottom waters. Particulate Hg was typically >40% of the total Hg. Reactive Hg (Hg[sub R]) was generally <3 pM and decreased with depth, but there is Hg[sub R] even in the anoxic bottom waters. Elemental Hg (Hg[sup 0]) was highest in the mixed layer and below the detection limit at depth. Demethylation is not an important source of Hg[sup 0] in this estuary. Dimethylmercury was not detected. Monomethylmercury (MMHg) was near the detection limit in the mixed layer and increased rapidly in the low oxygen region. Dissolved MMHg correlated with bacteriochlorophyll pigments, suggesting that the microbial community plays an important role in MMHg production in the estuary. The overall distributions of dissolved and particulate Hg species result from the interaction with Fe and Mn redox cycling, particulate scavenging and sinking, and MMHg production in the pycnocline. The estimated rate of MMHg production from Hg[sub R] in the pycnocline region is 1.7% d[sup [minus]1]. Hg[sup 0] and MMHg are formed principally in the mixed layer and in the pycnocline region, respectively. Particulate scavenging is important, and sedimentation, methylation, and Hg[sup 0] production are the principal sinks for Hg[sub R].

  9. The Microbial Engines That Drive Earth’s Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Falkowski, Paul G.; Fenchel, Tom; Delong, Edward F.

    2008-05-01

    Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet’s history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

  10. The microbial engines that drive Earth's biogeochemical cycles.

    PubMed

    Falkowski, Paul G; Fenchel, Tom; Delong, Edward F

    2008-05-23

    Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet's history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

  11. The global troposphere - Biogeochemical cycles, chemistry, and remote sensing

    NASA Technical Reports Server (NTRS)

    Levine, J. S.; Allario, F.

    1982-01-01

    The chemical composition of the troposphere is controlled by various biogeochemical cycles that couple the atmosphere with the oceans, the solid earth and the biosphere, and by atmospheric photochemical/chemical reactions. These cycles and reactions are discussed and a number of key questions concerning tropospheric composition and chemistry for the carbon, nitrogen, oxygen and sulfur species are identified. Next, various remote sensing techniques and instruments capable of measuring and monitoring tropospheric species from the ground, aircraft and space to address some of these key questions are reviewed. Future thrusts in remote sensing of the troposphere are also considered.

  12. Benthic exchange and biogeochemical cycling in permeable sediments.

    PubMed

    Huettel, Markus; Berg, Peter; Kostka, Joel E

    2014-01-01

    The sandy sediments that blanket the inner shelf are situated in a zone where nutrient input from land and strong mixing produce maximum primary production and tight coupling between water column and sedimentary processes. The high permeability of the shelf sands renders them susceptible to pressure gradients generated by hydrodynamic and biological forces that modulate spatial and temporal patterns of water circulation through these sediments. The resulting dynamic three-dimensional patterns of particle and solute distribution generate a broad spectrum of biogeochemical reaction zones that facilitate effective decomposition of the pelagic and benthic primary production products. The intricate coupling between the water column and sediment makes it challenging to quantify the production and decomposition processes and the resultant fluxes in permeable shelf sands. Recent technical developments have led to insights into the high biogeochemical and biological activity of these permeable sediments and their role in the global cycles of matter.

  13. Biogeochemical cycling of Si in a California rice cropping system

    NASA Astrophysics Data System (ADS)

    Seyfferth, A.; Kocar, B. D.; Lee, J.; Fendorf, S.

    2012-12-01

    Silicon is the second most abundant element in the earth's crust, but the number of studies on the biogeochemical cycling of Si does not reflect its environmental ubiquity. While not an "essential" plant nutrient, Si is important for many plants, particularly monocots, for structural integrity and protection against disease and environmental stress. For rice, Si fertilization with N and P increases yield significantly more than N and P alone. While total Si in soil is high, much of this Si is tied up in the crystal lattice of primary and secondary minerals and is only slowly released through chemical weathering. Thus, plant-available Si may be limited particularly in highly weathered soils in humid environments where long-term chemical weathering has lead to desilicification of the soils (e.g., in Southeast Asia where most rice is grown). In such Si-depleted environments, the biocycling of Si through decaying plant litter (i.e., phytoliths) and subsequent plant uptake has proven an important component of the terrestrial biogeochemical cycling of Si. Here, we investigate the dynamics of Si cycling over a two-year period in a rice paddy in Northern California where soil incorporation of harvested rice straw has impacted the terrestrial biogeochemical cycling of Si. We use Ge/Si ratios in pore-waters to infer the contribution of chemical weathering vs. dissolution of plant phytoliths on the plant-available Si pool. We found that the Ge/Si ratios change over the growing and fallow seasons reflecting different rates of Si release through phytolith dissolution and plant uptake.

  14. Water pulses and biogeochemical cycles in arid and semiarid ecosystems.

    PubMed

    Austin, Amy T; Yahdjian, Laura; Stark, John M; Belnap, Jayne; Porporato, Amilcare; Norton, Urszula; Ravetta, Damián A; Schaeffer, Sean M

    2004-10-01

    The episodic nature of water availability in arid and semiarid ecosystems has significant consequences on belowground carbon and nutrient cycling. Pulsed water events directly control belowground processes through soil wet-dry cycles. Rapid soil microbial response to incident moisture availability often results in almost instantaneous C and N mineralization, followed by shifts in C/N of microbially available substrate, and an offset in the balance between nutrient immobilization and mineralization. Nitrogen inputs from biological soil crusts are also highly sensitive to pulsed rain events, and nitrogen losses, particularly gaseous losses due to denitrification and nitrate leaching, are tightly linked to pulses of water availability. The magnitude of the effect of water pulses on carbon and nutrient pools, however, depends on the distribution of resource availability and soil organisms, both of which are strongly affected by the spatial and temporal heterogeneity of vegetation cover, topographic position and soil texture. The 'inverse texture hypothesis' for net primary production in water-limited ecosystems suggests that coarse-textured soils have higher NPP than fine-textured soils in very arid zones due to reduced evaporative losses, while NPP is greater in fine-textured soils in higher rainfall ecosystems due to increased water-holding capacity. With respect to belowground processes, fine-textured soils tend to have higher water-holding capacity and labile C and N pools than coarse-textured soils, and often show a much greater flush of N mineralization. The result of the interaction of texture and pulsed rainfall events suggests a corollary hypothesis for nutrient turnover in arid and semiarid ecosystems with a linear increase of N mineralization in coarse-textured soils, but a saturating response for fine-textured soils due to the importance of soil C and N pools. Seasonal distribution of water pulses can lead to the accumulation of mineral N in the dry season

  15. Biogeochemical cycling in terrestrial ecosystems of the Caatinga Biome.

    PubMed

    Menezes, R S C; Sampaio, E V S B; Giongo, V; Pérez-Marin, A M

    2012-08-01

    The biogeochemical cycles of C, N, P and water, the impacts of land use in the stocks and flows of these elements and how they can affect the structure and functioning of Caatinga were reviewed. About half of this biome is still covered by native secondary vegetation. Soils are deficient in nutrients, especially N and P. Average concentrations of total soil P and C in the top layer (0-20 cm) are 196 mg kg(-1) and 9.3 g kg(-1), corresponding to C stocks around 23 Mg ha(-1). Aboveground biomass of native vegetation varies from 30 to 50 Mg ha(-1), and average root biomass from 3 to 12 Mg ha(-1). Average annual productivities and biomass accumulation in different land use systems vary from 1 to 7 Mg ha(-1) year(-1). Biological atmospheric N2 fixation is estimated to vary from 3 to 11 kg N ha(-1) year-1 and 21 to 26 kg N ha(-1) year(-1) in mature and secondary Caatinga, respectively. The main processes responsible for nutrient and water losses are fire, soil erosion, runoff and harvest of crops and animal products. Projected climate changes in the future point to higher temperatures and rainfall decreases. In face of the high intrinsic variability, actions to increase sustainability should improve resilience and stability of the ecosystems. Land use systems based on perennial species, as opposed to annual species, may be more stable and resilient, thus more adequate to face future potential increases in climate variability. Long-term studies to investigate the potential of the native biodiversity or adapted exotic species to design sustainable land use systems should be encouraged.

  16. Ocean fronts drive marine fishery production and biogeochemical cycling.

    PubMed

    Woodson, C Brock; Litvin, Steven Y

    2015-02-10

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy-sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom-up vs. top-down regulation and high productivity in marine ecosystems. PMID:25624488

  17. Ocean fronts drive marine fishery production and biogeochemical cycling

    PubMed Central

    Woodson, C. Brock; Litvin, Steven Y.

    2015-01-01

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy–sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom–up vs. top–down regulation and high productivity in marine ecosystems. PMID:25624488

  18. Ocean fronts drive marine fishery production and biogeochemical cycling.

    PubMed

    Woodson, C Brock; Litvin, Steven Y

    2015-02-10

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy-sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom-up vs. top-down regulation and high productivity in marine ecosystems.

  19. Microbial diversity and biogeochemical cycling in soda lakes.

    PubMed

    Sorokin, Dimitry Y; Berben, Tom; Melton, Emily Denise; Overmars, Lex; Vavourakis, Charlotte D; Muyzer, Gerard

    2014-09-01

    Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments. PMID:25156418

  20. Microbial diversity and biogeochemical cycling in soda lakes.

    PubMed

    Sorokin, Dimitry Y; Berben, Tom; Melton, Emily Denise; Overmars, Lex; Vavourakis, Charlotte D; Muyzer, Gerard

    2014-09-01

    Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments.

  1. Global changes in biogeochemical cycles in response to human activities

    NASA Technical Reports Server (NTRS)

    Moore, Berrien, III; Melillo, Jerry

    1994-01-01

    The main objective of our research was to characterize biogeochemical cycles at continental and global scales in both terrestrial and aquatic ecosystems. This characterization applied to both natural ecosystems and those disturbed by human activity. The primary elements of interest were carbon and nitrogen and the analysis sought to quantify standing stocks and dynamic cycling processes. The translocation of major nutrients from the terrestrial landscape to the atmosphere (via trace gases) and to fluvial systems (via leaching, erosional losses, and point source pollution) were of particular importance to this study. Our aim was to develop the first generation of Earth System Models. Our research was organized around the construction and testing of component biogeochemical models which treated terrestrial ecosystem processes, aquatic nutrient transport through drainage basins, and trace gas exchanges at the continental and global scale. A suite of three complementary models were defined within this construct. The models were organized to operate at a 1/2 degree latitude by longitude level of spatial resolution and to execute at a monthly time step. This discretization afforded us the opportunity to understand the dynamics of the biosphere down to subregional scales, while simultaneously placing these dynamics into a global context.

  2. Biogeochemical Cycles for Combining Chemical Knowledge and ESD Issues in Greek Secondary Schools Part I: Designing the Didactic Materials

    ERIC Educational Resources Information Center

    Koutalidi, Sophia; Scoullos, Michael

    2016-01-01

    Biogeochemical cycles support all anthropogenic activities and are affected by them, therefore they are intricately interlinked with global environmental and socioeconomic issues. Elements of these cycles that are already included in the science/chemical curriculum and textbooks intended for formal education in Greek secondary schools were…

  3. Linking soil and sediment properties for research on biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Kuhn, Nikolaus J.

    2013-04-01

    Conventional perspectives on soil erosion include the on-site damage to soil and reductions in crop yield, as well as the resulting off-site effects on water quality, runoff and sediment loads in rivers. Our evolving understanding of the Earth System has added a new dimension to the role of soil erosion within the global geochemical cycles. First, the relevance of soil as a nutrient and Carbon (C) pool was recognized. Initially, the role of soils in the global C cycle was largely considered to be limited to a vertical exchange of greenhouse house gases (GHG) between vegetation, soil and atmosphere and thus mostly studied by soil scientists, plant ecologists and climatologists. Even Critical Zone research focused mostly on weathering and regolith properties and ignored lateral fluxes of dissolved or particulate organic matter. Since the late 1990s, a wider role of soils in biogeochemical cycles has emerged. Recent estimates place the lateral movement of C between soil and sediment pools in terrestrial ecosystems (including rivers and lakes) at approximately 0.6 to 1.5 Gt per year. Some of the eroded C is replaced by photosynthesis from the atmosphere, but at a cost of additional emissions, for example due to fertilizer production. The long-term fate of the eroded and deposited soil organic matter is subject to an open debate and suffers from a lack of reliable spatial information on lateral C fluxes and its subsequent fate in terrestrial ecosystems. The connection between soil C pool, GHG emissions and erosion illustrates the relevance of surface processes for the C fluxes between Earth's spheres. Accordingly, soil is now considered as mobile system to make accurate predictions about the consequences of global change for terrestrial biogeochemical cycles and climate feedbacks. This expanded perspective on soils as dynamic pool of weathering regolith, sediment, nutrients and C at the interface between the geospheres requires the analysis of relevant soil properties

  4. Linking Soil and Sediment Properties for research on Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Kuhn, N. J.

    2012-04-01

    Conventional perspectives on soil erosion include the on-site damage to soil and reductions in crop yield, as well as the resulting off-site effects on water quality, runoff and sediment loads in rivers. Our evolving understanding of the Earth System has added a new dimension to the role of soil erosion within the global geochemical cycles. First, the relevance of soil as a nutrient and Carbon (C) pool was recognized. Initially, the role of soils in the global C cycle was largely considered to be limited to a vertical exchange of greenhouse house gases (GHG) between vegetation, soil and atmosphere and thus mostly studied by soil scientists, plant ecologists and climatologists. Even Critical Zone research focused mostly on weathering and regolith properties and ignored lateral fluxes of dissolved or particulate organic matter. Since the late 1990s, a wider role of soils in biogeochemical cycles has emerged. Recent estimates place the lateral movement of C between soil and sediment pools in terrestrial ecosystems (including rivers and lakes) at approximately 0.6 to 1.5 Gt per year. Some of the eroded C is replaced by photosynthesis from the atmosphere, but at a cost of additional emissions, for example due to fertilizer production. The long-term fate of the eroded and deposited soil organic matter is subject to an open debate and suffers from a lack of reliable spatial information on lateral C fluxes and its subsequent fate in terrestrial ecosystems. The connection between soil C pool, GHG emissions and erosion illustrates the relevance of surface processes for the C fluxes between Earth's spheres. Accordingly, soil is now considered as mobile system to make accurate predictions about the consequences of global change for terrestrial biogeochemical cycles and climate feedbacks. This expanded perspective on soils as dynamic pool of weathering regolith, sediment, nutrients and C at the interface between the geospheres requires the analysis of relevant soil properties

  5. Biogeochemical cycling in terrestrial ecosystems - Modeling, measurement, and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.; Matson, P. A.; Lawless, J. G.; Aber, J. D.; Vitousek, P. M.

    1985-01-01

    The use of modeling, remote sensing, and measurements to characterize the pathways and to measure the rate of biogeochemical cycling in forest ecosystems is described. The application of the process-level model to predict processes in intact forests and ecosystems response to disturbance is examined. The selection of research areas from contrasting climate regimes and sites having a fertility gradient in that regime is discussed, and the sites studied are listed. The use of remote sensing in determining leaf area index and canopy biochemistry is analyzed. Nitrous oxide emission is investigated by using a gas measurement instrument. Future research projects, which include studying the influence of changes on nutrient cycling in ecosystems and the effect of pollutants on the ecosystems, are discussed.

  6. The changing role of dust in biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Neff, J. C.; Reynolds, R. L.; Farmer, G. L.; Reheis, M.

    2007-12-01

    Dust emission and deposition have the potential to deplete and enrich ecosystems of mineral resources essential to life. In many parts of the world, and particularly in semi-arid settings, wind erosion of soils and the subsequent long-distance transport and deposition of mineral aerosols play a basic role in soil composition and processes, including the production of essential plant nutrients through weathering. Although the long-term role of dust in the development of soils is reasonably well understood, the effects of recent dust emission and deposition on ecosystems are not. Recent work on ecosystems around the world has highlighted the fundamental importance of contemporary wind erosion and dust deposition in biogeochemical cycling. In the western U.S., studies of Sr and Nd isotopes, elemental concentrations, and magnetic properties elucidate the role of dust in recent soil development and soil loss by wind erosion related to land-use change. In the arid landscapes in and around Canyonlands National Park (Utah), these techniques provide insight into the development of soils in stable settings where human activities have been minimal but the loss of soil in areas affected by grazing and recreational activities. In stable settings of the central Colorado Plateau (Utah), dust deposition is responsible for a large proportion (as much as 20 percent) of surface soil mass and elemental content. In contrast, wind erosion is responsible for large losses of nutrients and surface soil of nearby, closely similar geomorphic settings disturbed by human activity. In the San Juan Mountains (Colorado) downwind of the Colorado Plateau, Nd and Sr isotopes in dust and lake sediments provide evidence for large increases in dust deposition during the 19th and 20th century compared to records from the middle to late Holocene. The recent enhancement in dust deposition is also responsible for increased loading of many elements, including essential nutrients that may influence

  7. Ecohydrological Interfaces as Dynamic Hotspots of Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Krause, Stefan; Lewandowski, Joerg; Hannah, David; McDonald, Karlie; Folegot, Silvia; Baranov, Victor

    2016-04-01

    Ecohydrological interfaces, represent the boundaries between water-dependent ecosystems that can alter substantially the fluxes of energy and matter. There is still a critical gap of understanding the organisational principles of the drivers and controls of spatially and temporally variable ecohydrological interface functions. This knowledge gap limits our capacity to efficiently quantify, predict and manage the services provided by complex ecosystems. Many ecohydrological interfaces are characterized by step changes in microbial metabolic activity, steep redox gradients and often even thermodynamic phase shifts, for instance at the interfaces between atmosphere and water or soil matrix and macro-pores interfaces. This paper integrates investigations from point scale laboratory microcosm experiments with reach and subcatchment scale tracer experiments and numerical modeling studies to elaborate similarities in the drivers and controls that constitute the enhanced biogeochemical activity of different types of ecohydrologica interfaces across a range of spatial and temporal scales. We therefore combine smart metabolic activity tracers to quantify the impact of bioturbating benthic fauna onto ecosystem respiration and oxygen consumption and investigate at larger scale, how microbial metabolic activity and carbon turnover at the water-sediment interface are controlled by sediment physical and chemical properties as well as water temperatures. Numerical modeling confirmed that experimentally identified hotspots of streambed biogeochemical cycling were controlled by patterns of physical properties such as hydraulic conductivities or bioavailability of organic matter, impacting on residence time distributions and hence reaction times. In contrast to previous research, our investigations thus confirmed that small-scale variability of physical and chemical interface properties had a major impact on biogeochemical processing at the investigated ecohydrological interfaces

  8. Ecohydrological Interfaces as Dynamic Hotspots of Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Krause, S.

    2015-12-01

    Ecohydrological interfaces, represent the boundaries between water-dependent ecosystems that can alter substantially the fluxes of energy and matter. There is still a critical gap of understanding the organisational principles of the drivers and controls of spatially and temporally variable ecohydrological interface functions. This knowledge gap limits our capacity to efficiently quantify, predict and manage the services provided by complex ecosystems. Many ecohydrological interfaces are characterized by step changes in microbial metabolic activity, steep redox gradients and often even thermodynamic phase shifts, for instance at the interfaces between atmosphere and water or soil matrix and macro-pores interfaces. This paper integrates investigations from point scale microcosm experiments with reach and subcatchment scale tracer experiments and numerical modeling studies to elaborate similarities in the drivers and controls that constitute the enhanced biogeochemical activity of different types of ecohydrologica interfaces across a range of spatial and temporal scales. We therefore combine smart metabolic activity tracers to quantify the impact of bioturbating benthic fauna onto ecosystem respiration and oxygen consumption and investigate at larger scale, how microbial metabolic activity and carbon turnover at the water-sediment interface are controlled by sediment physical and chemical properties as well as water temperatures. Numerical modeling confirmed that experimentally identified hotspots of streambed biogeochemical cycling were controlled by patterns of physical properties such as hydraulic conductivities or bioavailability of organic matter, impacting on residence time distributions and hence reaction times. In contrast to previous research, our investigations thus confirmed that small-scale variability of physical and chemical interface properties had a major impact on biogeochemical processing at the investigated ecohydrological interfaces. Our results

  9. Isotopic constraints on biogeochemical cycling of copper in the ocean.

    PubMed

    Takano, Shotaro; Tanimizu, Masaharu; Hirata, Takafumi; Sohrin, Yoshiki

    2014-12-05

    Trace elements and their isotopes are being actively studied as powerful tracers in the modern ocean and as proxies for the palaeocean. Although distributions and fractionations have been reported for stable isotopes of dissolved Fe, Cu, Zn and Cd in the ocean, the data remain limited and only preliminary explanations have been given. Copper is of great interest because it is either essential or toxic to organisms and because its distribution reflects both biological recycling and scavenging. Here we present new isotopic composition data for dissolved Cu (δ(65)Cu) in seawater and rainwater. The Cu isotopic composition in surface seawater can be explained by the mixing of rain, river and deep seawater. In deep seawater, δ(65)Cu becomes heavier with oceanic circulation because of preferential scavenging of the lighter isotope ((63)Cu). In addition, we constrain the marine biogeochemical cycling of Cu using a new box model based on Cu concentrations and δ(65)Cu.

  10. Phototrophic bacteria and their role in the biogeochemical sulfur cycle

    NASA Technical Reports Server (NTRS)

    Trueper, H. G.

    1985-01-01

    An essential step that cannot be bypassed in the biogeochemical cycle of sulfur today is dissimilatory sulfate reduction by anaerobic bacteria. The enormous amounts of sulfides produced by these are oxidized again either anaerobically by phototrophic bacteria or aerobically by thiobacilli and large chemotrophic bacteria (Beggiatoa, Thiovulum, etc.). Phototrophic bacteria use sulfide, sulfur, thiosulfate, and sulfite as electron donors for photosynthesis. The most obvious intermediate in their oxidative sulfur metabolism is a long chain polysulfide that appears as so called sulfur globules either inside (Chromatiaceae) or outside (Ectothiorhodospiraceae, Chlorobiaceae, and some of the Rhodospirillaceae) the cells. The assimilation of sulfur compounds in phototrophic bacteria is in principle identical with that of nonphototrophic bacteria. However, the Chlorobiaceae and some of the Chromatiaceae and Rhodospirillaceae, unable to reduce sulfate, rely upon reduced sulfur for biosynthetic purposes.

  11. Differential leaflet mortality may influence biogeochemical cycling following tropical cyclones.

    PubMed

    Marler, Thomas E; Ferreras, Ulysses

    2014-01-01

    Intensity of tropical cyclones is expected to increase in the coming century, and an improved understanding of their influence on biogeochemical cycles would benefit ecologists and conservationists. We studied the November 2013 Typhoon Haiyan damage to observe that numerous examples of partial leaf necrosis on intact leaves of trees in the Cycadaceae and Arecaceae families resulted, leaving behind a copious amount of arboreal dead leaf material attached to live leaves. The decay process of this form of arboreal litter has not been previously studied. When compared with decay of ground litter or detached litter suspended in the canopy, we predict the decay process of this form of arboreal litter will include increased photooxidation, leaching, and comminution by detritivorous insects and mites; but decreased catabolism of organic molecules by saprophytic organisms.

  12. INTERACTIVE EFFECTS OF SOLAR UV RADIATION AND CLIMATE CHANGE ON BIOGEOCHEMICAL CYCLING

    EPA Science Inventory

    This paper assesses research on the interactions of UV radiation (280-400 nm) and global climate change with global biogeochemical cycles at the Earth's surface. The effects of UV-B (280-315 nm), which are dependent on the stratospheric ozone layer, on biogeochemical cycles are o...

  13. Watershed Management and Mercury Biogeochemical Cycling in Lake Zapotlan, Mexico

    NASA Astrophysics Data System (ADS)

    Malczyk, E. A.; Branfireun, B. A.

    2009-05-01

    Lake Zapotlan is an endorheic subtropical eutrophic lake located in Jalisco State, Mexico. The lake supports a small but important local fishery for carp (Cyprinus sp.) and tilapia (Oreochromis sp.) and is an internationally recognized RAMSAR site. Very little research exists in these regions regarding mercury biogeochemical cycling. The lake receives considerable untreated municipal wastewater discharge that is elevated in inorganic total mercury (250-800 ng Hg/L) and organic methylmercury (3-10 ng CH3Hg+/L). The lake is also located on an active fault zone near an active volcano which may cause natural mercury enrichment. To assess a mercury risk to the commercial fishery we investigated the distribution of total inorganic mercury and organic methylmercury in waters, sediments, and fish tissues of the lake, surrounding wetlands, and incoming waters. Although there were high concentrations of inorganic mercury entering the lake in wastewater and seasonal tributary stream flow inputs, average concentrations in lake surface waters (3 ng Hg/L) and sediments (50 ng Hg/gdw) were relatively low. Average concentrations of total inorganic mercury were an order of magnitude higher in water (70 ng Hg/L) and sediment (245 ng Hg/gdw) in wetlands receiving the wastewater discharges. Mercury loading to the main body of the lake is likely reduced by these wetland buffer zones which allow mercury bound to particulate matter to settle out. A similar pattern was seen with respect to methylmercury concentrations. Average concentrations of methylmercury in lake surface water (below detect) and sediment (0.1 ng/gdw) were lower than in impounded wetlands (1 ng CH3Hg+/L, 0.7 ng CH3Hg+/gdw). Mercury concentrations in tilapia (3.5 ng/g) and carp (8 ng/g) from the commercial catch were found to be low in mercury; likely due to a combination of physiological, biogeochemical, and ecological factors.

  14. Tracking evolution of urban biogeochemical cycles: salinization of fresh water

    NASA Astrophysics Data System (ADS)

    Kaushal, S.; McDowell, W. H.; Wollheim, W. M.; Duan, S.; Gorman, J. K.; Haq, S.; Hohman, S.; Smith, R. M.; Mayer, P. M.

    2014-12-01

    The built environment often changes quickly in response to human activities, thus contributing to an evolution of stream chemistry over time. Depending upon development and management strategies, these changes can result in pulses and/or long-term trends. Here, we explore patterns of evolving salinization of fresh water over time, and we evaluate the potential water quality implications of fresh water salinization. We show that there has been global salinization of freshwater across urbanizing landscapes over a century. We also show that human-accelerated weathering in watersheds and river alkalinization can further influence regional rates of salinization (in addition to anthropogenic sources such as road salts, sewage leaks, etc.). Finally, we investigate how salinization of fresh water can impact stream sediment fluxes of carbon, nutrients, and sulfate in watersheds across a land use gradient at the Baltimore Long-Term Ecological Research (LTER) site. The impacts of salinization on mobilization and uptake of carbon, nutrients, and sulfate in streams warrant further consideration in water quality management strategies. Overall, we propose that salinization can be a "universal tracer" of watershed urbanization globally with major regional consequences for drinking water and evolution of biogeochemical cycles in freshwater ecosystems.

  15. Suspended Particles: Their Role in Estuarine Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Turner, A.; Millward, G. E.

    2002-12-01

    Suspended particles are instrumental in controlling the reactivity, transport and biological impacts of substances in aquatic environments, and provide a crucial link for chemical constituents between the water column, bed sediment and food chain. This article reviews the role of suspended particles in the chemical and biological cycling of trace constituents (trace metals, organo-metallic compounds and hydrophobic organic micropollutants; HOMs) in estuaries, with particular emphasis on the effects of and changes to particle reactivity and composition. The partitioning (or distribution coefficient, KD ) and bioavailability of chemical constituents, and assimilation efficiency (AE) of such by bivalve suspension feeders, are identified as key parameters requiring definition for accurate biogeochemical modelling, and the discussion centres around the determination of and controls on these parameters. Particle-water interactions encompass a variety of physical, biological, electrostatic and hydrophobic effects, and are largely dependent on the character and concentration of suspended particles and salinity. The salinity-dependence results from the competing and complexing effects of seawater ions for trace metals, and the compression of water in the presence of dissolved seawater ions and consequent salting out of neutral solute (HOMs, organo-metallic compounds and some trace metal complexes). The extent of biological solubilization of chemical constituents from suspended particles is dependent on the nature of chemical components of the gastro-intestinal environment and their interactions with ingested particles, and the physiological (e.g. gut passage time) and chemical (e.g. redox conditions and pH) constraints imposed on these interactions. Generally, chemicals that associate with fine, organic-rich particles (or, for some HOMs, fine inorganic particles), and desorb at pH 5-6 and/or complex with digestive enzymes or surfactants are most readily solubilized in the

  16. Biogeochemical Cycling of Iron Isotopes at Loihi Seamount

    NASA Astrophysics Data System (ADS)

    Rouxel, O. J.; Edwards, K. J.; Moyer, C. L.; Wheat, G.

    2007-12-01

    It is now well recognized that seafloor hydrothermal systems support diverse and unique biological communities capable of using dissolved chemical species, such as Iron (Fe), as well as mineral substrates as sources of metabolic energy. Deep-sea hydrothermal systems such as the Loihi Seamount hydrothermal field are important examples of environments where both chemical and biological oxidation of Fe can occur simultaneously and provide an ideal system in which to test hypotheses on biotic vs. abiotic origin of iron-oxide formation. Here, we applied Fe isotope systematics of hydrothermal fluids and Fe-oxide precipitates to study biogeochemical cycling of iron and the formation of microbial mats at Loihi seamount. Warm hydrothermal fluids (<60°C) and iron oxide precipitates were recovered using the DSV Jason II during FeMO 2006 cruise. Fe-isotope composition of warm hydrothermal fluids yielded δ56Fe values near 0.1‰ and are indistinguishable from basalt values defined at 0.09‰. Suspended iron oxide particles in the fluids and seafloor iron oxide sediments (microbial mats) recovered in the vicinity of the vents yielded systematically positive δ56Fe values. The enrichment in heavy isotopes between 1.05 to 1.43‰ relative to Fe(II) in vent fluids is slightly higher than those obtained for abiotic Fe oxidation (around 0.9‰) and slightly lower than for bacterial Fe oxidation at circum neutral pH (around 1.5‰). Mass balance considerations also imply that the extent of Fe(II) oxidation is very limited in the vicinity of the vents (<20%) and that most Fe(II) is oxidized later in the water column. These results are consistent with the low oxygen content of seawater (i.e. summit of Loihi is located in the OMZ) and resultant slow kinetics of abiotic Fe oxidation. In contrast, mats supported by very diffuse fluids recovered at the base of the Loihi Seamount (~ 5000m depth) have distinctly negative Fe-isotope values between -0.3 to -1.5‰. These negative values are

  17. SEASONAL VARIATION IN THE BIOGEOCHEMICAL CYCLING OF SESTON IN GRAND TRAVERSE BAY, LAKE MICHIGAN. (R825151)

    EPA Science Inventory

    This study describes the biogeochemical cycling of seston in Grand Traverse Bay, Lake Michigan. Seston was characterized by carbon and nitrogen elemental and isotopic abundances. Fluorescence, temperature, light transmittance, and concentrations of dissolved inorganic nitrogen we...

  18. Extracellular enzyme activity and biogeochemical cycling in restored prairies

    NASA Astrophysics Data System (ADS)

    Lynch, L.; Hernandez, D.; Schade, J. D.

    2011-12-01

    during the spring. Microbial biomass C:N ratios increased from October to March, and decreased through the summer, while production of CBH, LAP and PHOS all showed the opposite pattern, decreasing through March and increasing in the summer. Following snowmelt, enzyme production preceded a recovery in microbial biomass, possibly as a result of increased competition for available resources between plant and microbial communities, or a shift to organic sources of C, N, and P which required a higher investment in enzymes. Due to their rapid growth rates and turnover, microbes are a particularly reactive component of terrestrial ecosystems and significantly influence biogeochemical cycling. Because carbon degradation may be constrained by nutrient availability, understanding how extracellular enzyme production, decomposition rate, and nutrient flux change over time is essential if we are to anticipate ecosystem responses to environmental changes.

  19. Characterizing marine particles and their impact on biogeochemical cycles in the GEOTRACES program

    NASA Astrophysics Data System (ADS)

    Anderson, Robert F.; Hayes, Christopher T.

    2015-04-01

    Trace elements and their isotopes (TEIs) are of priority interest in several subdisciplines of oceanography. For example, the vital role of trace element micronutrients in regulating the growth of marine organisms, which, in turn, may influence the structure and composition of marine ecosystems, is now well established (Morel and Price, 2003; Twining and Baines, 2013). Natural distributions of some TEIs have been severely impacted by anthropogenic emissions, leading to substantial perturbations of natural ocean inventories. Pb and Hg, for example, (Lamborg et al., 2002; Schaule and Patterson, 1981), may represent a significant threat to human food supply. Furthermore, much of our knowledge of past variability in the ocean environment, including the ocean's role in climate change, has been developed using TEI proxies archived in marine substrates such as sediments, corals and microfossils. Research in each of these areas relies on a comprehensive knowledge of the distributions of TEIs in the ocean, and on the sensitivity of these distributions to changing environmental conditions. With numerous processes affecting the regional supply and removal of TEIs in the ocean, a comprehensive understanding of the marine biogeochemical cycles of TEIs can be attained only by a global, coordinated, international effort. GEOTRACES, an international program designed to study the marine biogeochemical cycles of trace elements and their isotopes (Anderson et al., 2014; Henderson et al., 2007), aims to achieve these goals.

  20. Interactive Effects of Urban Land Use and Climate Change on Biogeochemical Cycles (Invited)

    NASA Astrophysics Data System (ADS)

    Pouyat, R. V.

    2009-12-01

    Urban land-use change can affect biogeochemical cycles through altered disturbance regimes, landscape management practices (e.g., irrigation and fertilization), built structures, and altered environments (heat island effect, pollution, introduction of non-native species, loss of native species). As a result, the conversion of native to urban ecological systems has been shown to significantly affect carbon, nitrogen, and water cycles at local, regional, and global scales. These changes have created novel habitats and ecosystems, which have no analogue in the history of life. Nonetheless, some of the environmental changes occurring in urban areas are analogous to the changes expected in climate by the end of the century, e.g. atmospheric increase in CO2 and an increase in air temperatures, which can be utilized as a “natural experiment” to investigate global change effects on large scale ecosystem processes. Moreover, as analogues of expected future environments, urban ecological systems may act as reservoirs of plant and animal species for adjoining landscapes that are expected to undergo relatively rapid climate changes in the next 100 years. Urban land-use change by itself may contribute to changes in regional weather patterns and long-term changes in global climate, which will depend on the net effect of converting native systems to urban systems and the comparison of per capita “footprints” between urban, suburban, and rural inhabitants. My objectives are to 1) assess the impact of changes in urban land-use on climate change and in turn how climate change may affect urban biogeochemical cycles and 2) discuss the potential for urban ecosystems to mitigate green house gas emissions.

  1. Effects of solar UV radiation and climate change on biogeochemical cycling: interactions and feedbacks.

    PubMed

    Zepp, R G; Erickson, D J; Paul, N D; Sulzberger, B

    2011-02-01

    Solar UV radiation, climate and other drivers of global change are undergoing significant changes and models forecast that these changes will continue for the remainder of this century. Here we assess the effects of solar UV radiation on biogeochemical cycles and the interactions of these effects with climate change, including feedbacks on climate. Such interactions occur in both terrestrial and aquatic ecosystems. While there is significant uncertainty in the quantification of these effects, they could accelerate the rate of atmospheric CO(2) increase and subsequent climate change beyond current predictions. The effects of predicted changes in climate and solar UV radiation on carbon cycling in terrestrial and aquatic ecosystems are expected to vary significantly between regions. The balance of positive and negative effects on terrestrial carbon cycling remains uncertain, but the interactions between UV radiation and climate change are likely to contribute to decreasing sink strength in many oceanic regions. Interactions between climate and solar UV radiation will affect cycling of elements other than carbon, and so will influence the concentration of greenhouse and ozone-depleting gases. For example, increases in oxygen-deficient regions of the ocean caused by climate change are projected to enhance the emissions of nitrous oxide, an important greenhouse and ozone-depleting gas. Future changes in UV-induced transformations of aquatic and terrestrial contaminants could have both beneficial and adverse effects. Taken in total, it is clear that the future changes in UV radiation coupled with human-caused global change will have large impacts on biogeochemical cycles at local, regional and global scales. PMID:21253663

  2. Effects of solar UV radiation and climate change on biogeochemical cycling: Interactions and feedbacks

    SciTech Connect

    Erickson III, David J

    2011-01-01

    Solar UV radiation, climate and other drivers of global change are undergoing significant changes and models forecast that these changes will continue for the remainder of this century. Here we assess the effects of solar UV radiation on biogeochemical cycles and the interactions of these effects with climate change, including feedbacks on climate. Such interactions occur in both terrestrial and aquatic ecosystems. While there is significant uncertainty in the quantification of these effects, they could accelerate the rate of atmospheric CO{sub 2} increase and subsequent climate change beyond current predictions. The effects of predicted changes in climate and solar UV radiation on carbon cycling in terrestrial and aquatic ecosystems are expected to vary significantly between regions. The balance of positive and negative effects on terrestrial carbon cycling remains uncertain, but the interactions between UV radiation and climate change are likely to contribute to decreasing sink strength in many oceanic regions. Interactions between climate and solar UV radiation will affect cycling of elements other than carbon, and so will influence the concentration of greenhouse and ozone-depleting gases. For example, increases in oxygen-deficient regions of the ocean caused by climate change are projected to enhance the emissions of nitrous oxide, an important greenhouse and ozone-depleting gas. Future changes in UV-induced transformations of aquatic and terrestrial contaminants could have both beneficial and adverse effects. Taken in total, it is clear that the future changes in UV radiation coupled with human-caused global change will have large impacts on biogeochemical cycles at local, regional and global scales.

  3. Effects of solar UV radiation and climate change on biogeochemical cycling: interactions and feedbacks.

    PubMed

    Zepp, R G; Erickson, D J; Paul, N D; Sulzberger, B

    2011-02-01

    Solar UV radiation, climate and other drivers of global change are undergoing significant changes and models forecast that these changes will continue for the remainder of this century. Here we assess the effects of solar UV radiation on biogeochemical cycles and the interactions of these effects with climate change, including feedbacks on climate. Such interactions occur in both terrestrial and aquatic ecosystems. While there is significant uncertainty in the quantification of these effects, they could accelerate the rate of atmospheric CO(2) increase and subsequent climate change beyond current predictions. The effects of predicted changes in climate and solar UV radiation on carbon cycling in terrestrial and aquatic ecosystems are expected to vary significantly between regions. The balance of positive and negative effects on terrestrial carbon cycling remains uncertain, but the interactions between UV radiation and climate change are likely to contribute to decreasing sink strength in many oceanic regions. Interactions between climate and solar UV radiation will affect cycling of elements other than carbon, and so will influence the concentration of greenhouse and ozone-depleting gases. For example, increases in oxygen-deficient regions of the ocean caused by climate change are projected to enhance the emissions of nitrous oxide, an important greenhouse and ozone-depleting gas. Future changes in UV-induced transformations of aquatic and terrestrial contaminants could have both beneficial and adverse effects. Taken in total, it is clear that the future changes in UV radiation coupled with human-caused global change will have large impacts on biogeochemical cycles at local, regional and global scales.

  4. Interactive effects of solar UV radiation and climate change on biogeochemical cycling.

    PubMed

    Zepp, R G; Erickson, D J; Paul, N D; Sulzberger, B

    2007-03-01

    This report assesses research on the interactions of UV radiation (280-400 nm) and global climate change with global biogeochemical cycles at the Earth's surface. The effects of UV-B (280-315 nm), which are dependent on the stratospheric ozone layer, on biogeochemical cycles are often linked to concurrent exposure to UV-A radiation (315-400 nm), which is influenced by global climate change. These interactions involving UV radiation (the combination of UV-B and UV-A) are central to the prediction and evaluation of future Earth environmental conditions. There is increasing evidence that elevated UV-B radiation has significant effects on the terrestrial biosphere with implications for the cycling of carbon, nitrogen and other elements. The cycling of carbon and inorganic nutrients such as nitrogen can be affected by UV-B-mediated changes in communities of soil organisms, probably due to the effects of UV-B radiation on plant root exudation and/or the chemistry of dead plant material falling to the soil. In arid environments direct photodegradation can play a major role in the decay of plant litter, and UV-B radiation is responsible for a significant part of this photodegradation. UV-B radiation strongly influences aquatic carbon, nitrogen, sulfur and metals cycling that affect a wide range of life processes. UV-B radiation changes the biological availability of dissolved organic matter to microorganisms, and accelerates its transformation into dissolved inorganic carbon and nitrogen, including carbon dioxide and ammonium. The coloured part of dissolved organic matter (CDOM) controls the penetration of UV radiation into water bodies, but CDOM is also photodegraded by solar UV radiation. Changes in CDOM influence the penetration of UV radiation into water bodies with major consequences for aquatic biogeochemical processes. Changes in aquatic primary productivity and decomposition due to climate-related changes in circulation and nutrient supply occur concurrently with

  5. Interactive effects of solar UV radiation and climate change on biogeochemical cycling.

    PubMed

    Zepp, R G; Erickson, D J; Paul, N D; Sulzberger, B

    2007-03-01

    This report assesses research on the interactions of UV radiation (280-400 nm) and global climate change with global biogeochemical cycles at the Earth's surface. The effects of UV-B (280-315 nm), which are dependent on the stratospheric ozone layer, on biogeochemical cycles are often linked to concurrent exposure to UV-A radiation (315-400 nm), which is influenced by global climate change. These interactions involving UV radiation (the combination of UV-B and UV-A) are central to the prediction and evaluation of future Earth environmental conditions. There is increasing evidence that elevated UV-B radiation has significant effects on the terrestrial biosphere with implications for the cycling of carbon, nitrogen and other elements. The cycling of carbon and inorganic nutrients such as nitrogen can be affected by UV-B-mediated changes in communities of soil organisms, probably due to the effects of UV-B radiation on plant root exudation and/or the chemistry of dead plant material falling to the soil. In arid environments direct photodegradation can play a major role in the decay of plant litter, and UV-B radiation is responsible for a significant part of this photodegradation. UV-B radiation strongly influences aquatic carbon, nitrogen, sulfur and metals cycling that affect a wide range of life processes. UV-B radiation changes the biological availability of dissolved organic matter to microorganisms, and accelerates its transformation into dissolved inorganic carbon and nitrogen, including carbon dioxide and ammonium. The coloured part of dissolved organic matter (CDOM) controls the penetration of UV radiation into water bodies, but CDOM is also photodegraded by solar UV radiation. Changes in CDOM influence the penetration of UV radiation into water bodies with major consequences for aquatic biogeochemical processes. Changes in aquatic primary productivity and decomposition due to climate-related changes in circulation and nutrient supply occur concurrently with

  6. Microbial activity and biogeochemical cycling in first-order Russian Arctic streams

    NASA Astrophysics Data System (ADS)

    Rhoades, R. E.; Lynch, L. M.; Ortega, J. C.; Holmes, R. M.; Mann, P. J.; Vonk, J. E.; Schade, J. D.

    2011-12-01

    Global climate change is strongly impacting Arctic ecosystems and is predicted to lead to thawing of permafrost soils. These soils are rich in organic matter and other nutrients and influence biogeochemical cycling in terrestrial and aquatic ecosystems. Small arctic streams are likely to be the first aquatic ecosystems to receive materials exported as soils warm. These first-order streams are characterized by strong interactions between the water column and stream bottom and have the potential to affect nutrient flux. Previous studies suggest that phosphorous availability limits biological productivity in many first-order arctic streams, however, they remain understudied, particularly in the Russian Arctic. Our objective was to assess microbial activity and biogeochemical cycling among arctic streams. We used three approaches to meet our objectives, including a survey of 9 streams, intensive longitudinal sampling in 5 streams, and nutrient pulse addition experiments in 4 streams, designed to assess the potential for limitation by N or P. We measured pH, temperature, dissolved oxygen, NH4, SRP, DOC, and TDN at all sampling sites. We also conducted biological oxygen demand (BOD) incubations designed to assess DOC lability, and correlated these measurements with background nutrient concentrations. We found a strong positive linear correlation between BOD and phosphate concentration, suggesting P limitation of production and/or consumption of labile DOC. To complement ambient stream measurements, we conducted whole stream nutrient addition experiments to calculate N and P uptake lengths, which we then used to infer whether N or P is more likely to limit biological processes, and the degree of coupling between N and P cycling. Results from the nutrient addition experiments suggest both N and P limitation among streams depending on stream location and characteristics. In addition, these experiments suggest a significant, but complex interaction between N and P cycles

  7. The Neoproterozoic oxygenation event: Environmental perturbations and biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Och, Lawrence M.; Shields-Zhou, Graham A.

    2012-01-01

    The oxygen content of the Earth's surface environment is thought to have increased in two broad steps: the Great Oxygenation Event (GOE) around the Archean-Proterozoic boundary and the Neoproterozoic Oxygenation Event (NOE), during which oxygen possibly accumulated to the levels required to support animal life and ventilate the deep oceans. Although the concept of the GOE is widely accepted, the NOE is less well constrained and its timing and extent remain the subjects of debate. We review available evidence for the NOE against the background of major climatic perturbations, tectonic upheaval related to the break-up of the supercontinent Rodinia and reassembly into Gondwana, and, most importantly, major biological innovations exemplified by the Ediacarian Biota and the Cambrian 'Explosion'. Geochemical lines of evidence for the NOE include perturbations to the biogeochemical cycling of carbon. Generally high δ 13C values are possibly indicative of increased organic carbon burial and the release of oxidative power to the Earth's surface environment after c. 800 Ma. A demonstrably global and primary record of extremely negative δ 13C values after about 580 Ma strongly suggests the oxidation of a large dissolved organic carbon pool (DOC), the culmination of which around c. 550 Ma coincided with an abrupt diversification of Ediacaran macrobiota. Increasing 87Sr/ 86Sr ratios toward the Neoproterozoic-Cambrian transition indicates enhanced continental weathering which may have fuelled higher organic production and burial during the later Neoproterozoic. Evidence for enhanced oxidative recycling is given by the increase in sulfur isotope fractionation between sulfide and sulfate, exceeding the range usually attained by sulfate reduction alone, reflecting an increasing importance of the oxidative part in the sulfur cycle. S/C ratios attained a maximum during the Precambrian-Cambrian transition, further indicating higher sulfate concentrations in the ocean and a

  8. Earth's Early Biosphere and the Biogeochemical Carbon Cycle

    NASA Technical Reports Server (NTRS)

    DesMarais, David

    2004-01-01

    Our biosphere has altered the global environment principally by influencing the chemistry of those elements most important for life, e g., C, N, S, O, P and transition metals (e.g., Fe and Mn). The coupling of oxygenic photosynthesis with the burial in sediments of photosynthetic organic matter, and with the escape of H2 to space, has increased the state of oxidation of the Oceans and atmosphere. It has also created highly reduced conditions within sedimentary rocks that have also extensively affected the geochemistry of several elements. The decline of volcanism during Earth's history reduced the flow of reduced chemical species that reacted with photosynthetically produced O2. The long-term net accumulation of photosynthetic O2 via biogeochemical processes has profoundly influenced our atmosphere and biosphere, as evidenced by the O2 levels required for algae, multicellular life and certain modem aerobic bacteria to exist. When our biosphere developed photosynthesis, it tapped into an energy resource that was much larger than the energy available from oxidation-reduction reactions associated with weathering and hydrothermal activity. Today, hydrothermal sources deliver globally (0.13-1.1)x10(exp l2) mol yr(sup -1) of reduced S, Fe(2+), Mn(2+), H2 and CH4; this is estimated to sustain at most about (0.2-2)xl0(exp 12)mol C yr(sup -1) of organic carbon production by chemautotrophic microorganisms. In contrast, global photosynthetic productivity is estimated to be 9000x10(exp 12) mol C yr(sup -1). Thus, even though global thermal fluxes were greater in the distant geologic past than today, the onset of oxygenic photosynthesis probably increased global organic productivity by some two or more orders of magnitude. This enormous productivity materialized principally because oxygenic photosynthesizers unleashed a virtually unlimited supply of reduced H that forever freed life from its sole dependence upon abiotic sources of reducing power such as hydrothermal emanations

  9. Accounting for the biogeochemical cycle of nitrogen in input-output life cycle assessment.

    PubMed

    Singh, Shweta; Bakshi, Bhavik R

    2013-08-20

    Nitrogen is indispensable for sustaining human activities through its role in the production of food, animal feed, and synthetic chemicals. This has encouraged significant anthropogenic mobilization of reactive nitrogen and its emissions into the environment resulting in severe disruption of the nitrogen cycle. This paper incorporates the biogeochemical cycle of nitrogen into the 2002 input-output model of the U.S. economy. Due to the complexity of this cycle, this work proposes a unique classification of nitrogen flows to facilitate understanding of the interaction between economic activities and various flows in the nitrogen cycle. The classification scheme distinguishes between the mobilization of inert nitrogen into its reactive form, use of nitrogen in various products, and nitrogen losses to the environment. The resulting inventory and model of the US economy can help quantify the direct and indirect impacts or dependence of economic sectors on the nitrogen cycle. This paper emphasizes the need for methods to manage the N cycle that focus not just on N losses, which has been the norm until now, but also include other N flows for a more comprehensive view and balanced decisions. Insight into the N profile of various sectors of the 2002 U.S. economy is presented, and the inventory can also be used for LCA or Hybrid LCA of various products. The resulting model is incorporated in the approach of Ecologically-Based LCA and available online.

  10. Biogeochemical Cycles of Carbon and Sulfur on Early Earth (and on Mars?)

    NASA Technical Reports Server (NTRS)

    DesMarais, D. J.

    2004-01-01

    The physical and chemical interactions between the atmosphere, hydrosphere, geosphere and biosphere can be examined for elements such as carbon (C) and sulfur (S) that have played central roles for both life and the environment. The compounds of C are highly important, not only as organic matter, but also as atmospheric greenhouse gases, pH buffers in seawater, oxidation-reduction buffers virtually everywhere, and key magmatic constituents affecting plutonism and volcanism. S assumes important roles as an oxidation-reduction partner with C and Fe in biological systems, as a key constituent in magmas and volcanic gases, and as a major influence upon pH in certain environments. These multiple roles of C and S interact across a network of elemental reservoirs interconnected by physical, chemical and biological processes. These networks are termed biogeochemical C and S cycles.

  11. Reversible redox chemistry of quinones: impact on biogeochemical cycles.

    PubMed

    Uchimiya, Minori; Stone, Alan T

    2009-10-01

    The role of quinone biomolecules and quinone moieties of natural organic matter (NOM) as the electron transfer mediator in essential biogeochemical processes such as iron bioreduction and contaminant degradation has received considerable interests in the past decade. Hypothesized electron shuttling mechanism must be evaluated based on the availability and stability of quinones under a given environmental setting. The goal of this review is to examine the source, reactivity, and fate of potential quinone catalysts with respect to chemical interactions (e.g., with other quinones and nucleophiles) that will inevitably occur in complex environmental media. We will first discuss natural and anthropogenic sources of quinones in aqueous environments, and fundamental transformation pathways including cross reaction, autoxidation, and addition reactions. We will then assess how the described sources (molecular structure) and transformation pathways (stability) will impact the ability of a quinone molecule to catalyze a biogeochemical process. Thermodynamics and kinetics of electron transfer reactions with both the electron donor (e.g., hydrogen sulfide as a bulk reductant) and the terminal electron acceptor (e.g., nitroaromatic explosives in contaminant degradation), and stability towards irreversible side reactions are the key factors determining the geochemical conditions under which the catalysis by a quinone molecule will be operative.

  12. Biogeochemical cycles of Chernobyl-born radionuclides in the contaminated forest ecosystems: long-term dynamics of the migration processes

    NASA Astrophysics Data System (ADS)

    Shcheglov, Alexey; Tsvetnova, Ol'ga; Klyashtorin, Alexey

    2013-04-01

    Biogeochemical migration is a dominant factor of the radionuclide transport through the biosphere. In the early XX century, V.I. Vernadskii, a Russian scientist known, noted about a special role living things play in transport and accumulation of natural radionuclide in various environments. The role of biogeochemical processes in migration and redistribution of technogenic radionuclides is not less important. In Russia, V. M. Klechkovskii and N.V. Timofeev-Ressovskii showed some important biogeochemical aspects of radionuclide migration by the example of global fallout and Kyshtym accident. Their followers, R.M. Alexakhin, M.A. Naryshkin, N.V. Kulikov, F.A. Tikhomirov, E.B. Tyuryukanova, and others also contributed a lot to biogeochemistry of radionuclides. In the post-Chernobyl period, this area of knowledge received a lot of data that allowed building the radioactive element balance and flux estimation in various biogeochemical cycles [Shcheglov et al., 1999]. Regrettably, many of recent radioecological studies are only focused on specific radionuclide fluxes or pursue some applied tasks, missing the holistic approach. Most of the studies consider biogeochemical fluxes of radioactive isotopes in terms of either dose estimation or radionuclide migration rates in various food chains. However, to get a comprehensive picture and develop a reliable forecast of environmental, ecological, and social consequences of radioactive pollution in a vast contaminated area, it is necessary to investigate all the radionuclide fluxes associated with the biogeochemical cycles in affected ecosystems. We believe such an integrated approach would be useful to study long-term environmental consequences of the Fukushima accident as well. In our long-term research, we tried to characterize the flux dynamics of the Chernobyl-born radionuclides in the contaminated forest ecosystems and landscapes as a part of the integrated biogeochemical process. Our field studies were started in June of

  13. Deep Carbon Cycling in the Deep Hydrosphere: Abiotic Organic Synthesis and Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Sherwood Lollar, B.; Sutcliffe, C. N.; Ballentine, C. J.; Warr, O.; Li, L.; Ono, S.; Wang, D. T.

    2014-12-01

    Research into the deep carbon cycle has expanded our understanding of the depth and extent of abiotic organic synthesis in the deep Earth beyond the hydrothermal vents of the deep ocean floor, and of the role of reduced gases in supporting deep subsurface microbial communities. Most recently, this research has expanded our understanding not only of the deep biosphere but the deep hydrosphere - identifying for the first time the extreme antiquity (millions to billions of years residence time) of deep saline fracture waters in the world's oldest rocks. Energy-rich saline fracture waters in the Precambrian crust that makes up more than 70% of the Earth's continental lithosphereprovide important constraints on our understanding of the extent of the crust that is habitable, on the time scales of hydrogeologic isolation (and conversely mixing) of fluids relevant to the deep carbon cycle, and on the geochemistry of substrates that sustain both abiotic organic synthesis and biogeochemical cycles driven by microbial communities. Ultimately the chemistry and hydrogeology of the deep hydrosphere will help define the limits for life in the subsurface and the boundary between the biotic-abiotic fringe. Using a variety of novel techniques including noble gas analysis, clumped isotopologues of methane, and compound specific isotope analysis of CHNOS, this research is addressing questions about the distribution of deep saline fluids in Precambrian rocks worldwide, the degree of interconnectedness of these potential biomes, the habitability of these fluids, and the biogeographic diversity of this new realm of the deep hydrosphere.

  14. The Use of Mass Balance Investigations in the Study of the Biogeochemical Cycle of Sulfur

    NASA Astrophysics Data System (ADS)

    Evans, H. E.; Dillon, P. J.; Molot, L. A.

    1997-06-01

    The use of mass balances in the investigation of the biogeochemical cycle of sulfur is reviewed for three systems: 1) upland catchments, 2) wetlands, and 3) lakes. In upland catchments, the major inputs of sulfur are via wet and dry atmospheric deposition, whereas outputs or losses occur primarily through volatilization and/or runoff. In addition, sulfur may be stored in vegetation and in the forest floor. In wetlands (particularly peatlands), a large proportion of the sulfur inputs are derived from surface and groundwater originating in the upland system. Because of the fluctuating water table in wetlands, they can act as a source or sink for sulfate, depending on the redox conditions. Wetlands, therefore, can significantly affect input-output budgets for lakes. In most lakes, only a small portion of the sulfate input is retained, (i.e. not lost from the lake via outflow), indicating that there is an excess of sulfate relative to biological needs. Seepage lakes are exceptions to this generalization. Although the reactivity of the sulfate input to many lakes is low, sulfate levels, especially in regions receiving substantial atmospheric sulfur deposition, are high enough that the portion reduced results in substantial in-lake alkalinity production; in fact, in many cases, alkalinity production from sulfate reduction is greater than that resulting from not only other in-lake processes but from external sources (the catchment) as well.The importance of mass balance investigations in elucidating the biogeochemical cycling of sulfur is stressed and the need for additional studies on a whole-system basis stressed.

  15. Interactive effects of ozone depletion and climate change on biogeochemical cycles.

    PubMed

    Zepp, Richard G; Callaghan, Terry V; Erickson, David J

    2003-01-01

    The effects of ozone depiction on global biogeochemical cycles, via increased UV-B radiation at the Earth's surface, have continued to be documented over the past 4 years. In this report we also document various effects of UV-B that interact with global climate change because the detailed interactions between ozone depletion and climate change are central to the prediction and evaluation of future Earth environmental conditions. There is increasing evidence that elevated UV-B has significant effects on the terrestrial biosphere with important implications for the cycling of carbon, nitrogen and other elements. Increased UV has been shown to induce carbon monoxide production from dead plant matter in terrestrial ecosystems, nitrogen oxide production from Arctic and Antarctic snowpacks, and halogenated substances from several terrestrial ecosystems. New studies on UV effects on the decomposition of dead leaf material confirm that these effects are complex and species-specific. Decomposition can be retarded, accelerated or remain unchanged. It has been difficult to relate effects of UV on decomposition rates to leaf litter chemistry, as this is very variable. However, new evidence shows UV effects on some fungi, bacterial communities and soil fauna that could play roles in decomposition and nutrient cycling. An important new result is that not only is nitrogen cycling in soils perturbed significantly by increased UV-B, but that these effects persist for over a decade. As nitrogen cycling is temperature dependent, this finding clearly links the impacts of ozone depletion to the ability of plants to use nitrogen in a warming global environment. There are many other potential interactions between UV and climate change impacts on terrestrial biogeochemical cycles that remain to be quantified. There is also new evidence that UV-B strongly influences aquatic carbon, nitrogen, sulfur, and metals cycling that affect a wide range of life processes. UV-B accelerates the

  16. Insight from Genomics on Biogeochemical Cycles in a Shallow-Sea Hydrothermal System

    NASA Astrophysics Data System (ADS)

    Lu, G. S.; Amend, J.

    2015-12-01

    Shallow-sea hydrothermal ecosystems are dynamic, high-energy systems influenced by sunlight and geothermal activity. They provide accessible opportunities for investigating thermophilic microbial biogeochemical cycles. In this study, we report biogeochemical data from a shallow-sea hydrothermal system offshore Paleochori Bay, Milos, Greece, which is characterized by a central vent covered by white microbial mats with hydrothermally influenced sediments extending into nearby sea grass area. Geochemical analysis and deep sequencing provide high-resolution information on the geochemical patterns, microbial diversity and metabolic potential in a two-meter transect. The venting fluid is elevated in temperature (~70oC), low in pH (~4), and enriched in reduced species. The geochemical pattern shows that the profile is affected by not only seawater dilution but also microbial regulation. The microbial community in the deepest section of vent core (10-12 cm) is largely dominated by thermophilic archaea, including a methanogen and a recently described Crenarcheon. Mid-core (6-8 cm), the microbial community in the venting area switches to the hydrogen utilizer Aquificae. Near the sediment-water interface, anaerobic Firmicutes and Actinobacteria dominate, both of which are commonly associated with subsurface and hydrothermal sites. All other samples are dominated by diverse Proteobacteria. The sulfate profile is strongly correlated with the population size of delta- and episilon-proteobactia. The dramatic decrease in concentrations of As and Mn in pore fluids as a function of distance from the vent suggests that in addition to seawater dilution, microorganisms are likely transforming these and other ions through a combination of detoxification and catabolism. In addition, high concentrations of dissolved Fe are only measurable in the shallow sea grass area, suggesting that iron-transforming microorganisms are controlling Fe mobility, and promoting biomineralization. Taken

  17. Biogeochemical Considerations

    NASA Technical Reports Server (NTRS)

    Delwiche, C. C.

    1984-01-01

    Some questions relating to biogeochemical cycles and the nature of the biosphere driving them is best approached by means of remote (satellite) monitoring. Important among these are the distribution of various ecosystems and the boundaries between them, the extent and rate of modification of ecosystems by human or other factors, and various climatic and physical factors affecting ecosystem performance as influenced by human or natural processes.

  18. Impact of sulfate pollution on anaerobic biogeochemical cycles in a wetland sediment.

    PubMed

    Baldwin, Darren S; Mitchell, Alison

    2012-03-15

    The impact of sulfate pollution is increasingly being seen as an issue in the management of inland aquatic ecosystems. In this study we use sediment slurry experiments to explore the addition of sulfate, with or without added carbon, on the anaerobic biogeochemical cycles in a wetland sediment that previously had not been exposed to high levels of sulfate. Specifically we looked at the cycling of S (sulfate, dissolved and particulate sulfide--the latter measured as acid volatile sulfide; AVS), C (carbon dioxide, bicarbonate, methane and the short chain volatile fatty acids formate, acetate, butyrate and propionate), N (dinitrogen, ammonium, nitrate and nitrite) and redox active metals (Fe(II) and Mn(II)). Sulfate had the largest effects on the cycling of S and C. All the added S at lower loadings were converted to AVS over the course of the experiment (30 days). At the highest loading (8 mmol) less than 50% of consumed S was converted to AVS, however this is believed to be a kinetic effect. Although sulfate reduction was occurring in sediments with added sulfate, dissolved sulfide concentrations remained low throughout the study. Sulfate addition affected methanogenesis. In the absence of added carbon, addition of sulfate, even at a loading of 1 mmol, resulted in a halving of methane formation. The initial rate of formation of methane was not affected by sulfate if additional carbon was added to the sediment. However, there was evidence for anaerobic methane oxidation in those sediments with added sulfate and carbon, but not in those sediments treated only with carbon. Surprisingly, sulfate addition had little apparent impact on N dynamics; previous studies have shown that sulfide can inhibit denitrification and stimulate dissimilatory nitrate reduction to ammonia. We propose that because most of the reduced sulfur was in particulate form, levels of dissolved sulfide were too low to interfere with the N cycle.

  19. The Biogeochemical Cycling of Nitrogen in Annual and Perennial Agroecosystems

    NASA Astrophysics Data System (ADS)

    Fortuna, A.; Cogger, C.

    2010-12-01

    Organic agricultural systems are dependent upon fertilizer amendments that undergo ammonification prior to the release of plant available nitrogen (N) as ammonium. Ammonia may be further transformed via nitrification to nitrate resulting in greater potential for leaching or volatilization. Additions of plant residue and animal amendments contribute to soil N and carbon pools improving soil quality and the potential for release of ammonium. Therefore, agricultural systems that relay on organic inputs as fertilizer sources must be monitored to insure stored nutrients are released during plant uptake to prevent N losses. Our experimental design allows us to determine the effects of several organic cropping systems and fertility regimes on plant available N, nitrification potential and nitrifier gene copy number g-1 dry soil across season in a grass ley and two annual systems receiving chicken manure or compost. Nitrification potentials measured via the shaken slurry method, KCl extractable N and ammonia oxidizing bacteria (AOB) and archaea (AOA) gene copy numbers g-1 dry soil measured via quantitative PCR were monitored. Nitrification potentials measured in March revealed increases in nitrification where compost had historically been applied (7.78 vs. 5.26 ± 0.856). Treatment affects were significant in June the closest date to application of amendments and when ammonification from soil N was optimal. Animal amendments were added yearly in annual systems (31.0 ± 2.91) vs every three years in the ley pasture (12.9 ± 2.91) resulting in a management effect. Copy numbers of AOB (2.69 x 108 ± 4.94 x 107) were greatest in plots receiving compost vs chicken manure. Preliminary measurements of AOA gene copy numbers reveal a similar trend to that of AOB. But, gene copy numbers of AOA (105 to 106) were lower than those of AOB. Nitrification potentials were not different across treatments in September, 11.8 ± 2.28. This research will contribute to the development of novel

  20. INTERACTIVE EFFECTS OF OZONE DEPLETION AND CLIMATE CHANGE ON BIOGEOCHEMICAL CYCLES

    EPA Science Inventory

    The effects of ozone depletion on global biogeochemical cycles, via increased UV-B radiation at the Earth's surface, have continued to be documented over the past 4 years. In this report we also document various effects of UV-B that interact with global climate change because the...

  1. Towards coupled physical-biogeochemical models of the ocean carbon cycle

    NASA Technical Reports Server (NTRS)

    Rintoul, Stephen R.

    1992-01-01

    The purpose of this review is to discuss the critical gaps in our knowledge of ocean dynamics and biogeochemical cycles. It is assumed that the ultimate goal is the design of a model of the earth system that can predict the response to changes in the external forces driving climate.

  2. INTERACTIONS OF CHANGING CLIMATE AND ULTRAVIOLET RADIATION IN AQUATIC AND TERRESTRIAL BIOGEOCHEMICAL CYCLES

    EPA Science Inventory

    During the past decade interest has developed in the interactive effects of climate change and UV radiation on aquatic and terrestrial biogeochemical cycles. This talk used selected case studies to illustrate approaches that are being used to investigate these intriguing processe...

  3. Effects of Solar UV Radiation and Climate Change on Biogeochemical Cycling: Interactions and Feedbacks

    EPA Science Inventory

    Solar UV radiation, climate and other drivers of global change are undergoing significant changes and models forecast that these changes will continue for the remainder of this century. Here we assess the effects of solar UV radiation on biogeochemical cycles and the interactions...

  4. Biogeochemical responses of the carbon cycle to natural and human perturbations: Past, present, and future

    SciTech Connect

    Ver, L.M.B.; Mackenzie, F.T.; Lerman, A.

    1999-07-01

    In the past three centuries, human perturbations of the environment have affected the biogeochemical behavior of the global carbon cycle and that of the other three nutrient elements closely coupled to carbon: nitrogen, phosphorus, and sulfur. The partitioning of anthropogenic CO{sub 2} among its various sinks in the past, for the present, and for projections into the near future is controlled by the interactions of these four elemental cycles within the major environmental domains of the land, atmosphere, coastal oceanic zone, and open ocean. The authors analyze the past, present, and future behavior of the global carbon cycle using the Terrestrial-Ocean-aTmosphere Ecosystem Model (TOTEM), a unique process-based model of the four global coupled biogeochemical cycles of carbon, nitrogen, phosphorus, and sulfur. They find that during the past 300 yrs, anthropogenic CO{sub 2} was mainly stored in the atmosphere and in the open ocean. Human activities on land caused an enhanced loss of mass from the terrestrial organic matter reservoirs (phytomass and humus) mainly through deforestation and consequently increased humus remineralization, erosion, and transport to the coastal margins by rivers and runoff. Photosynthetic uptake by the terrestrial phytomass was enhanced owing to fertilization by increasing atmospheric CO{sub 2} concentrations and supported by nutrients remineralized from organic matter. TOTEM results indicate that through most of the past 300 yrs, the loss of C from deforestation and other land-use activities was greater than the gain from the enhanced photosynthetic uptake. Since pre-industrial time (since 1700), the net flux of CO{sub 2} from the coastal waters has decreased by 40%, from 0.20 Gt C/yr to 0.12 Gt C/yr. TOTEM analyses of atmospheric CO{sub 2} concentrations for the 21st century were based on the fossil-fuel emission projections of IPCC (business as usual scenario) and of the more restrictive UN 1997 Kyoto Protocol. By the mid-21st century

  5. Multi-scale controls on spatial variability in river biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Blaen, Phillip; Kurz, Marie; Knapp, Julia; Mendoza-Lera, Clara; Lee-Cullin, Joe; Klaar, Megan; Drummond, Jennifer; Jaeger, Anna; Zarnetske, Jay; Lewandowski, Joerg; Marti, Eugenia; Ward, Adam; Fleckenstein, Jan; Datry, Thibault; Larned, Scott; Krause, Stefan

    2016-04-01

    Excessive nutrient concentrations are common in surface waters and groundwaters in agricultural catchments worldwide. Increasing geomorphological heterogeneity in river channels may help to attenuate nutrient pollution by facilitating water exchange fluxes with the hyporheic zone; a site of intense microbial activity where biogeochemical cycling rates can be high. However, the controls on spatial variability in biogeochemical cycling, particularly at scales relevant for river managers, are largely unknown. Here, we aimed to assess: 1) how differences in river geomorphological heterogeneity control solute transport and rates of biogeochemical cycling at sub-reach scales (102 m); and 2) the relative magnitude of these differences versus those relating to reach scale substrate variability (103 m). We used the reactive tracer resazurin (Raz), a weakly fluorescent dye that transforms to highly fluorescent resorufin (Rru) under mildly reducing conditions, as a proxy to assess rates of biogeochemical cycling in a lowland river in southern England. Solute tracer tests were conducted in two reaches with contrasting substrates: one sand-dominated and the other gravel-dominated. Each reach was divided into sub-reaches that varied in geomorphic complexity (e.g. by the presence of pool-riffle sequences or the abundance of large woody debris). Slug injections of Raz and the conservative tracer fluorescein were conducted in each reach during baseflow conditions (Q ≈ 80 L/s) and breakthrough curves monitored using in-situ fluorometers. Preliminary results indicate overall Raz:Rru transformation rates in the gravel-dominated reach were more than 50% higher than those in the sand-dominated reach. However, high sub-reach variability in Raz:Rru transformation rates and conservative solute transport parameters suggests small scale targeted management interventions to alter geomorphic heterogeneity may be effective in creating hotspots of river biogeochemical cycling and nutrient load

  6. The Oceanic Biogeochemical Cycle of Zinc and Its Isotopes

    NASA Astrophysics Data System (ADS)

    Vance, D.; Little, S. H.; de Souza, G. F.; Cullen, J. T.; Lohan, M. C.

    2014-12-01

    Zinc (Zn) is the most abundant trace metal in the phytoplankton that dominate vertical carbon export in the ocean, the diatoms. But the strong relationship between the vertical distributions of Zn and the silicon (Si) that makes up the opal hard parts of diatoms represents a long-standing puzzle. Zn is overwhelmingly co-located with phosphate in the organic matter of diatom cells, not with Si in opal, and is regenerated with phosphate in the upper ocean, not with Si in the deep. The resolution of this apparent paradox is key both to an understanding of the global oceanic cycling of Zn, and to the rates and mechanisms by which biologically-assimilated trace metals are returned to the photic zone. Here, we show that oceanic dissolved Zn exhibits significant isotopic variation in the upper ocean that is consistent with vertical cycling. However, we suggest that the isotopically homogeneous global deep ocean Zn pool is largely sourced from the Southern Ocean. This leads to a new view of the global oceanic cycling of this important trace metal, one that is consistent with the unique physiology of Southern Ocean diatoms, the coupling of Zn and Si in the global deep ocean, and the emerging paradigm for global ocean nutrient dynamics. Our data and interpretation imply a small Zn pool that is biologically cycled in the upper ocean, but is to a great extent decoupled from the much larger Southern-Ocean-dominated deep ocean pool.

  7. Effects of Stratospheric Ozone Depletion, Solar UV Radiation, and Climate Change on Biogeochemical Cycling: Interactions and Feedbacks

    EPA Science Inventory

    Climate change modulates the effects of solar UV radiation on biogeochemical cycles in terrestrial and aquatic ecosystems, particularly for carbon cycling, resulting in UV-mediated positive or negative feedbacks on climate. Possible positive feedbacks discussed in this assessment...

  8. Global Biogeochemical Cycle of Si: Its Coupling to the Perturbed C-N-P cycles in Industrial Time

    NASA Astrophysics Data System (ADS)

    Lerman, A.; Li, D. D.; MacKenzie, F. T.

    2010-12-01

    The importance of silicon (Si) in global biogeochemical cycles is demonstrated by its abundance in the land and aquatic biomass, where Si/C is 0.02 in land plants and 0.15 in marine organisms. Estimates show that Si-bioproduction accounts for ~1.5% of terrestrial primary production, and ~4.5% in the coastal ocean. Human land-use activities have substantially changed regional patterns of vegetation distribution, soil conditions, and nutrient fluxes via runoff to the coastal ocean. Anthropogenic chemical fertilization of the land has caused a significant increase in fluvial nitrogen (N) and phosphorus (P) transport, whereas land-use and vegetation mass changes have caused variations in the riverine Si input, all eventually affecting the cycling of nutrients in the marine environment. We developed a global biogeochemical model of the Si cycle as coupled to the global C-N-P cycle model, TOTEM II (Terrestrial-Ocean-aTmosphere-Ecosystem-Model). In the model analysis from year 1700, taken as the start of the Anthropocene, to 2050, the bioproduction of Si on land and in the ocean is coupled to the bioproduction of C, perturbed by the atmospheric CO2 rise, land-use changes, and chemical fertilization. Also, temperature rise affects the Si cycling on land through bioproduction rates, terrestrial organic matter remineralization, and weathering, thereby affecting its delivery to the coastal zone. The results show that biouptake and subsequent release of Si on land strongly affect the Si river flux to the coastal ocean. During the 350-year period, Si river discharge has increased by ~10% until ~1940, decreasing since then to below its 1700 value and continuing to drop, under the current IPCC IS92 projections of CO2, temperature and other forcings. From 1700 to ~1950, land-use changes, associated with slash and burn of large areas of high-productivity land, caused a decrease of global land vegetation. Dissolution of Si in soil humus and weathering of silicate minerals are the

  9. The Biogeochemical Role of Baleen Whales and Krill in Southern Ocean Nutrient Cycling

    PubMed Central

    Ratnarajah, Lavenia; Bowie, Andrew R.; Lannuzel, Delphine; Meiners, Klaus M.; Nicol, Stephen

    2014-01-01

    The availability of micronutrients is a key factor that affects primary productivity in High Nutrient Low Chlorophyll (HNLC) regions of the Southern Ocean. Nutrient supply is governed by a range of physical, chemical and biological processes, and there are significant feedbacks within the ecosystem. It has been suggested that baleen whales form a crucial part of biogeochemical cycling processes through the consumption of nutrient-rich krill and subsequent defecation, but data on their contribution are scarce. We analysed the concentration of iron, cadmium, manganese, cobalt, copper, zinc, phosphorus and carbon in baleen whale faeces and muscle, and krill tissue using inductively coupled plasma mass spectrometry. Metal concentrations in krill tissue were between 20 thousand and 4.8 million times higher than typical Southern Ocean HNLC seawater concentrations, while whale faecal matter was between 276 thousand and 10 million times higher. These findings suggest that krill act as a mechanism for concentrating and retaining elements in the surface layer, which are subsequently released back into the ocean, once eaten by whales, through defecation. Trace metal to carbon ratios were also higher in whale faeces compared to whale muscle indicating that whales are concentrating carbon and actively defecating trace elements. Consequently, recovery of the great whales may facilitate the recycling of nutrients via defecation, which may affect productivity in HNLC areas. PMID:25469984

  10. The biogeochemical role of baleen whales and krill in Southern Ocean nutrient cycling.

    PubMed

    Ratnarajah, Lavenia; Bowie, Andrew R; Lannuzel, Delphine; Meiners, Klaus M; Nicol, Stephen

    2014-01-01

    The availability of micronutrients is a key factor that affects primary productivity in High Nutrient Low Chlorophyll (HNLC) regions of the Southern Ocean. Nutrient supply is governed by a range of physical, chemical and biological processes, and there are significant feedbacks within the ecosystem. It has been suggested that baleen whales form a crucial part of biogeochemical cycling processes through the consumption of nutrient-rich krill and subsequent defecation, but data on their contribution are scarce. We analysed the concentration of iron, cadmium, manganese, cobalt, copper, zinc, phosphorus and carbon in baleen whale faeces and muscle, and krill tissue using inductively coupled plasma mass spectrometry. Metal concentrations in krill tissue were between 20 thousand and 4.8 million times higher than typical Southern Ocean HNLC seawater concentrations, while whale faecal matter was between 276 thousand and 10 million times higher. These findings suggest that krill act as a mechanism for concentrating and retaining elements in the surface layer, which are subsequently released back into the ocean, once eaten by whales, through defecation. Trace metal to carbon ratios were also higher in whale faeces compared to whale muscle indicating that whales are concentrating carbon and actively defecating trace elements. Consequently, recovery of the great whales may facilitate the recycling of nutrients via defecation, which may affect productivity in HNLC areas.

  11. Geomorphic and substrate controls on spatial variability in river solute transport and biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Blaen, Phillip; Kurz, Marie; Knapp, Julia; Mendoza-Lera, Clara; Lee-Cullin, Joe; Klaar, Megan; Drummond, Jen; Jaeger, Anna; Zarnetske, Jay; Lewandowski, Joerg; Marti, Eugenia; Ward, Adam; Fleckenstein, Jan; Datry, Thibault; Larned, Scott; Krause, Stefan

    2016-04-01

    Nutrient concentrations in surface waters and groundwaters are increasing in many agricultural catchments worldwide as a result of anthropogenic activities. Increasing geomorphological heterogeneity in river channels may help to attenuate nutrient pollution by facilitating water exchange fluxes with the hyporheic zone; a site of intense microbial activity where biogeochemical transformation rates (e.g. denitrification) can be high. However, the controls on spatial variability in biogeochemical cycling, particularly at scales relevant for river managers, are not well understood. Here, we aimed to assess: 1) how differences in geomorphological heterogeneity control river solute transport and rates of biogeochemical cycling at sub-reach scales (102 m); and 2) the relative magnitude of these differences versus those relating to reach scale substrate variability (103 m). We used the reactive 'smart' tracer resazurin (Raz), a weakly fluorescent dye that transforms to highly fluorescent resorufin (Rru) under mildly reducing conditions, as a proxy to assess rates of biogeochemical cycling in a lowland river in southern England. Solute tracer tests were conducted in two reaches with contrasting substrates: one sand-dominated and the other gravel-dominated. Each reach was divided into sub-reaches that varied in geomorphic complexity (e.g. by the presence of pool-riffle sequences or the abundance of large woody debris). Slug injections of Raz and the conservative tracer fluorescein were conducted in each reach during baseflow conditions (Q ≈ 80 L/s) and breakthrough curves monitored using in-situ fluorometers. Preliminary results indicate overall Raz:Rru transformation rates in the gravel-dominated reach were more than 50% higher than those in the sand-dominated reach. However, high sub-reach variability in Raz:Rru transformation rates and conservative solute transport parameters suggests small-scale targeted management interventions to alter geomorphic heterogeneity may be

  12. The biogeochemical cycles of trace metals in the oceans.

    PubMed

    Morel, F M M; Price, N M

    2003-05-01

    Planktonic uptake of some essential metals results in extraordinarily low concentrations in surface seawater. To sequester or take up these micronutrients, various microorganisms apparently release strong complexing agents and catalyze redox reactions that modify the bioavailability of trace metals and promote their rapid cycling in the upper water column. In turn, the low availability of some metals controls the rate of photosynthesis in parts of the oceans and the transformation and uptake of major nutrients such as nitrogen. The extremely low concentrations of several essential metals are both the cause and the result of ultraefficient uptake systems in the plankton and of widespread replacement of metals by one another for various biochemical functions.

  13. Key biogeochemical factors affecting soil carbon storage in Posidonia meadows

    NASA Astrophysics Data System (ADS)

    Serrano, Oscar; Ricart, Aurora M.; Lavery, Paul S.; Mateo, Miguel Angel; Arias-Ortiz, Ariane; Masque, Pere; Rozaimi, Mohammad; Steven, Andy; Duarte, Carlos M.

    2016-08-01

    Biotic and abiotic factors influence the accumulation of organic carbon (Corg) in seagrass ecosystems. We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of Corg. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4 m depth) accumulated 3- to 4-fold higher Corg stocks (averaging 6.3 kg Corg m-2) at 3- to 4-fold higher rates (12.8 g Corg m-2 yr-1) compared to meadows closer to the deep limits of distribution (at 6-8 m depth; 1.8 kg Corg m-2 and 3.6 g Corg m-2 yr-1). In shallower meadows, Corg stocks were mostly derived from seagrass detritus (88 % in average) compared to meadows closer to the deep limit of distribution (45 % on average). In addition, soil accumulation rates and fine-grained sediment content (< 0.125 mm) in shallower meadows (2.0 mm yr-1 and 9 %, respectively) were approximately 2-fold higher than in deeper meadows (1.2 mm yr-1 and 5 %, respectively). The Corg stocks and accumulation rates accumulated over the last 500 years in bare sediments (0.6 kg Corg m-2 and 1.2 g Corg m-2 yr-1) were 3- to 11-fold lower than in P. sinuosa meadows, while fine-grained sediment content (1 %) and seagrass detritus contribution to the Corg pool (20 %) were 8- and 3-fold lower than in Posidonia meadows, respectively. The patterns found support the hypothesis that Corg storage in seagrass soils is influenced by interactions of biological (e.g., meadow productivity, cover and density), chemical (e.g., recalcitrance of Corg stocks) and physical (e.g., hydrodynamic energy and soil accumulation rates) factors within the meadow. We conclude that there is a need to improve global estimates of seagrass carbon storage accounting for biogeochemical factors driving variability within habitats.

  14. Key biogeochemical factors affecting soil carbon storage in Posidonia meadows

    NASA Astrophysics Data System (ADS)

    Serrano, O.; Ricart, A. M.; Lavery, P. S.; Mateo, M. A.; Arias-Ortiz, A.; Masque, P.; Steven, A.; Duarte, C. M.

    2015-11-01

    Biotic and abiotic factors influence the accumulation of organic carbon (Corg) in seagrass ecosystems. We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of Corg. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4 m depth) accumulated 3 to 4-fold higher Corg stocks (averaging 6.3 kg Corg m-2) at 3 to 4-fold higher rates (12.8 g Corg m-2 yr-1) compared to meadows closer to the deep limits of distribution (at 6-8 m depth; 1.8 kg Corg m-2 and 3.6 g Corg m-2 yr-1). In shallower meadows, Corg stores were mostly derived from seagrass detritus (88 % in average) compared to meadows closer to the deep limit of distribution (45 % on average). Also, sediment accumulation rates and fine-grained sediment content (< 0.125 mm) in shallower meadows (2.0 mm yr-1 and 9 %, respectively) were approximately 2-fold higher than in deeper meadows (1.2 mm yr-1 and 5 %, respectively). The Corg stocks and accumulation rates accumulated over the last 500 years in bare sediments (0.6 kg Corg m-2 and 1.2 g Corg m-2 yr-1) were 3 to 11-fold lower than in P. sinuosa meadows, while fine-grained sediment content (1 %) and seagrass detritus contribution to the Corg pool (20 %) were 8 and 3-fold lower than in Posidonia meadows, respectively. The patterns found support the hypotheses that Corg storage in seagrass soils is influenced by interactions of biological (e.g. meadow productivity, cover and density), chemical (e.g. recalcitrance of Corg stocks) and physical (e.g. hydrodynamic energy and sediment accumulation rates) factors within the meadow. We conclude that there is a need to improve global estimates of seagrass carbon storage accounting for biogeochemical factors driving variability within habitats.

  15. The Thermodynamics of Marine Biogeochemical Cycles: Lotka Revisited

    NASA Astrophysics Data System (ADS)

    Vallino, Joseph J.; Algar, Christopher K.

    2016-01-01

    Nearly 100 years ago, Alfred Lotka published two short but insightful papers describing how ecosystems may organize. Principally, Lotka argued that ecosystems will grow in size and that their cycles will spin faster via predation and nutrient recycling so as to capture all available energy, and that evolution and natural selection are the mechanisms by which this occurs and progresses. Lotka's ideas have often been associated with the maximum power principle, but they are more consistent with recent developments in nonequilibrium thermodynamics, which assert that complex systems will organize toward maximum entropy production (MEP). In this review, we explore Lotka's hypothesis within the context of the MEP principle, as well as how this principle can be used to improve marine biogeochemistry models. We need to develop the equivalent of a climate model, as opposed to a weather model, to understand marine biogeochemistry on longer timescales, and adoption of the MEP principle can help create such models.

  16. Microorganisms and their roles in fundamental biogeochemical cycles.

    PubMed

    Madsen, Eugene L

    2011-06-01

    Biogeochemistry is the discipline that strives to understand intricate processes, often microbially mediated ones, that transform and recycle both organic and inorganic substances in soils, sediments, and waters. These processes, manifestations of diverse and highly evolved cellular mechanisms catalyzed by Bacteria and Archaea, maintain the biosphere. Progress in biogeochemistry relies upon the underlying science of environmental microbiology. Over the last 2 years, important discoveries have advanced the ecological, physiological, biochemical, and genomic bases for a variety of microbiological processes including anaerobic methane oxidation, photosynthesis, phosphorous uptake, biodegradation of organic pollutants, and numerous aspects of the nitrogen and sulfur cycles. Here recent literature is assessed and placed within a five-stage paradigm for making scientific progress in environmental microbiology, biogeochemistry, and biotechnology.

  17. The Thermodynamics of Marine Biogeochemical Cycles: Lotka Revisited.

    PubMed

    Vallino, Joseph J; Algar, Christopher K

    2016-01-01

    Nearly 100 years ago, Alfred Lotka published two short but insightful papers describing how ecosystems may organize. Principally, Lotka argued that ecosystems will grow in size and that their cycles will spin faster via predation and nutrient recycling so as to capture all available energy, and that evolution and natural selection are the mechanisms by which this occurs and progresses. Lotka's ideas have often been associated with the maximum power principle, but they are more consistent with recent developments in nonequilibrium thermodynamics, which assert that complex systems will organize toward maximum entropy production (MEP). In this review, we explore Lotka's hypothesis within the context of the MEP principle, as well as how this principle can be used to improve marine biogeochemistry models. We need to develop the equivalent of a climate model, as opposed to a weather model, to understand marine biogeochemistry on longer timescales, and adoption of the MEP principle can help create such models.

  18. Biogeochemical cycling in the ocean. Part 1: Introduction to the effects of upwelling along the west coast of North America

    NASA Technical Reports Server (NTRS)

    Howe, John T.

    1986-01-01

    Coastal upwelling is examined as it relates to the cycling of chemical species in coastal waters along the west coast of North America. The temporal and spatial features of upwelling phenomena in the Eastern boundary regions of the North Pacific Ocean are presented and discussed in terms of upwelling episodes. Climate conditions affecting upwelling include: thermal effects, wind-induced shear stress which moves surface layers, and the curl of the wind stress vector which is thought to affect the extent and nature of upwelling and the formation of offshore convergent downwelling fronts. These effects and the interaction of sunlight and upwelled nutrients which result in a biological bloom in surface waters is modeled analytically. The roles of biological and chemical species, including the effects of predation, are discussed in that context, and relevant remote sensing and in situ observations are presented. Climatological, oceanographic, biological, physical, chemical events, and processes that pertain to biogeochemical cycling are presented and described by a set of partial differential equations. Simple preliminary results are obtained and are compared with data. Thus a fairly general framework has been laid where the many facets of biogeochemical cycling in coastal upwelled waters can be examined in their relationship to one another, and to the whole, to whatever level of detail or approximation is warranted or desired.

  19. Biogeochemical processes driving mercury cycling in estuarine ecosystems

    NASA Astrophysics Data System (ADS)

    Schartup, A. T.

    2015-12-01

    Mercury (Hg) is a naturally occurring element that has been enriched in the environment through human activities, particularly in the coastal zone. Bioaccumulation of methylmercury (MeHg) in marine fishposes health risks for fish-consuming populations and is a worldwide health concern. A broader understanding of major environmental processes controlling Hg cycling and MeHg production and bioaccumulation in estuaries is therefore needed. Recent fieldwork and modeling show diverse sources of MeHg production in estuaries. We present geochemical modeling results for Hg and MeHg acrossmultiple estuaries with contrasting physical, chemical and biological characteristics. We report new measurements of water column and sediment mercury speciation and methylation data from the subarctic (Lake Melville, Labrador Canada) and temperate latitudes (Long Island Sound, Delaware Bay, Chesapeake Bay). We find that benthic sediment is a relatively small source of MeHg to the water column in all systems. Water column methylation drives MeHg levels in Lake Melville, whereas in more impacted shallow systems such as Chesapeake Bay and Long Island Sound, external inputs and sediment resuspension are more dominant. All systems are a net source of MeHg to the ocean through tidal exchange. In light of these inter-system differences, we will evaluate timescales of coastal ecosystem responses to changes in Hg loading that can help predict potential responses to future perturbations.

  20. Environmental Assessment for Potential Impacts of Ocean CO2 Storage on Marine Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Yamada, N.; Tsurushima, N.; Suzumura, M.; Shibamoto, Y.; Harada, K.

    2008-12-01

    Ocean CO2 storage that actively utilizes the ocean potential to dissolve extremely large amounts of CO2 is a useful option with the intent of diminishing atmospheric CO2 concentration. CO2 storage into sub-seabed geological formations is also considered as the option which has been already put to practical reconnaissance in some projects. Direct release of CO2 in the ocean storage and potential CO2 leakage from geological formations into the bottom water can alter carbonate system as well as pH of seawater. It is essential to examine to what direction and extent chemistry change of seawater induced by CO2 can affect the marine environments. Previous studies have shown direct and acute effects by increasing CO2 concentrations on physiology of marine organisms. It is also a serious concern that chemistry change can affect the rates of chemical, biochemical and microbial processes in seawater resulting in significant influences on marine biogeochemical cycles of the bioelements including carbon, nutrients and trace metals. We, AIST, have conducted a series of basic researches to assess the potential impacts of ocean CO2 storage on marine biogeochemical processes including CaCO3 dissolution, and bacterial and enzymatic decomposition of organic matter. By laboratory experiments using a special high pressure apparatus, the improved empirical equation was obtained for CaCO3 dissolution rate in the high CO2 concentrations. Based on the experimentally obtained kinetics with a numerical simulation for a practical scenario of oceanic CO2 sequestration where 50 Mton CO2 per year is continuously injected to 1,000-2,500 m depth within 100 x 333 km area for 30 years, we could illustrate precise 3-D maps for the predicted distributions of the saturation depth of CaCO3, in situ Ω value and CaCO3 dissolution rate in the western North Pacific. The result showed no significant change in the bathypelagic CaCO3 flux due to chemistry change induced by ocean CO2 sequestration. Both

  1. Evaluation of Boundless Biogeochemical Cycle through Development of Process-Based Eco-Hydrological and Biogeochemical Cycle Model to Incorporate Terrestrial-Aquatic Continuum

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2014-12-01

    Inland water might act as important transport pathway for continental biogeochemical cycle although its contribution has remained uncertain yet due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local-regional-global scales, and can simulate iteratively nonlinear feedback between hydrologic-geomorphic-ecological processes. Because NICE incorporates 3-D groundwater sub-model and expands from previous 1- or 2-D or steady state, the model can simulate the lateral transport pronounced at steeper-slope or riparian/floodplain with surface-groundwater connectivity. River discharge and groundwater level simulated by NICE agreed reasonably with those in previous researches (Niu et al., 2007; Fan et al., 2013) and extended to clarify lateral subsurface also has important role on global hydrologic cycle (Nakayama, 2011b; Nakayama and Shankman, 2013b) though the resolution was coarser. NICE was further developed to incorporate biogeochemical cycle including reaction between inorganic and organic carbons in terrestrial and aquatic ecosystems. The missing role of carbon cycle simulated by NICE, for example, CO2 evasion from inland water (global total flux was estimated as about 1.0 PgC/yr), was relatively in good agreement in that estimated by empirical relation using previous pCO2 data (Aufdenkampe et al., 2011; Laruelle et al., 2013). The model would play important role in identification of greenhouse gas balance of the biosphere and spatio-temporal hot spots, and bridging gap between top-down and bottom-up approaches (Cole et al. 2007; Frei et al. 2012).

  2. Biogeochemical factors affecting the presence of 210Po in groundwater

    USGS Publications Warehouse

    Seiler, R.L.; Stillings, L.L.; Cutler, N.; Salonen, L.; Outola, I.

    2011-01-01

    The discovery of natural 210Po enrichment at levels exceeding 500 mBq/L in numerous domestic wells in northern Nevada, USA, led to a geochemical investigation of the processes responsible for its mobilization. 210Po activities in 63 domestic and public-supply wells ranged from below 1 mBq/L to 6590 ± 590 mBq/L, among the highest reported levels in the USA. There is little spatial or depth variability in 210Pb activity in study-area sediments and mobilization of a few percent of the 210Po in the sediments would account for all of the 210Po in water. Stable-isotope measurements indicate SO4 reduction has occurred in all 210Po contaminated wells. Sulfide species are not accumulating in the groundwater in much of Lahontan Valley, probably because of S cycling involving microbial SO4 reduction, abiotic oxidation of H2S to S0 by Mn(IV), followed by microbial disproportionation of S0 to H2S and SO4. The high pH, Ca depletion, MnCO3 saturation, and presence of S0 in Lahontan Valley groundwater may be consequences of the anaerobic S cycling. Consistent with data from naturally-enriched wells in Florida, 210Po activities begin to decrease when aqueous sulfide species begin to accumulate. This may be due to formation and precipitation of PoS, however, Eh–pH diagrams suggest PoS would not be stable in study-area groundwater. An alternative explanation for the study area is that H2S accumulation begins when anaerobic S cycling stops because Mn oxides are depleted and their reduction is no longer releasing 210Po. Common features of 210Po-enriched groundwater were identified by comparing the radiological and geochemical data from Nevada with data from naturally-enriched wells in Finland, and Florida and Maryland in the USA. Values of pH ranged from 9 in Nevada wells, indicating that pH is not critical in determining whether 210Po is present. Where U is present in the sediments, the data suggest 210Po levels may be elevated in aquifers with (1) SO4-reducing waters with low H2S

  3. Affective cycling in thyroid disease

    SciTech Connect

    Tapp, A.

    1988-05-01

    Depression in an elderly man with primary recurrent unipolar depression responded to radioactive iodine treatment of a thyrotoxic nodule, without the addition of psychotropic medications. Two months later, manic symptoms developed concomitant with the termination of the hyperthyroid state secondary to the radioactive iodine treatment. Clinical implications of these findings in relation to the possible mechanism of action of thyroid hormones on affective cycling are discussed.

  4. Biogeochemical factors affecting mercury methylation rate in two contaminated floodplain soils

    NASA Astrophysics Data System (ADS)

    Frohne, T.; Rinklebe, J.; Langer, U.; Du Laing, G.; Mothes, S.; Wennrich, R.

    2012-01-01

    An automated biogeochemical microcosm system allowing controlled variation of redox potential (EH) in soil suspensions was used to assess the effect of various factors on the mobility of mercury (Hg) as well as on the methylation of Hg in two contaminated floodplain soils with different Hg concentrations (approximately 5 mg Hg kg-1 and >30 mg Hg kg-1). The experiment was conducted under stepwise variation from reducing (approximately -350 mV at pH 5) to oxidizing conditions (approximately 600 mV at pH 5). Results of phospholipid fatty acids (PLFA) analysis indicate the occurrence of sulfate reducing bacteria (SRB) such as Desulfobacter species (10Me16:0, cy17:0, 10Me18:0, cy19:0) or Desulfovibrio species (18:2ω6,9), which are considered to promote Hg methylation. The products of the methylation process are lipophilic, highly toxic methyl mercury species such as the monomethyl mercury ion [MeHg+], which is named as MeHg here. The ln(MeHg/Hgt) ratio is assumed to reflect the net production of monomethyl mercury normalized to total dissolved Hg (Hgt) concentration. This ratio increases with rising dissolved organic carbon (DOC) to Hgt ratio (ln(DOC/Hgt) ratio) (R2 = 0.39, p<0.0001, n= 63) whereas the relation between ln(MeHg/Hgt ratio and lnDOC is weaker (R2 = 0.09; p<0.05; n = 63). In conclusion, the DOC/Hgt ratio might be a more important factor for the Hg net methylation than DOC alone in the current study. Redox variations seem to affect the biogeochemical behavior of dissolved inorganic Hg species and MeHg indirectly through related changes in DOC, sulfur cycle, and microbial community structure whereas EH and pH values, as well as concentration of dissolved Fe3+/Fe2+ and Cl- seem to play subordinate roles in Hg mobilization and methylation under our experimental conditions.

  5. Biogeochemical factors affecting mercury methylation rate in two contaminated floodplain soils

    NASA Astrophysics Data System (ADS)

    Frohne, T.; Rinklebe, J.; Langer, U.; Du Laing, G.; Mothes, S.; Wennrich, R.

    2011-09-01

    An automated biogeochemical microcosm system allowing controlled variation of redox potential (EH) in soil suspensions was used to assess the effect of various factors on the mobility of mercury (Hg) as well as on the methylation of Hg in two contaminated floodplain soils with different Hg concentrations (approximately 5 mg kg-1 Hg and >30 mg kg-1 Hg). The experiment was conducted under stepwise variation from reducing (approximately -350 mV at pH 5) to oxidizing conditions (approximately 600 mV at pH 5). Results of phospholipid fatty acids (PLFA) analysis indicate the occurrence of sulfate reducing bacteria (SRB) such as Desulfobacter species (10me16:0, cy17:0, 10me18:0, cy19:0) or Desulfovibrio species (18:2ω6,9), which are considered to promote Hg methylation. The products of the methylation process are lipophilic, highly toxic methyl mercury species such as the monomethyl mercury ion [MeHg+], which is named as MeHg here. The ln(MeHg/Hgt) ratio is assumed to reflect the net production of monomethyl mercury normalized to total dissolved Hg (Hgt) concentration. This ratio increases with rising dissolved organic carbon (DOC) to Hgt ratio (lnDOC/lnHgt ratio) (R2 = 0.39, p < 0.0001, n = 63) whereas the relation between ln(MeHg/Hgt) ratio and lnDOC is weaker (R2 = 0.09; p < 0.05; n = 63). In conclusion, the DOC/Hgt ratio might be a more important factor for the Hg net methylation than DOC alone in the current study. Redox variations seem to affect the biogeochemical behavior of dissolved inorganic Hg species and MeHg indirectly through related changes in DOC, sulfur cycle, and microbial community structure whereas E,H and pH values, as well as concentration of dissolved Fe,3+/Fe2+ and Cl- seem to play subordinate roles in Hg mobilization and methylation under our experimental conditions.

  6. Top-down constraints on atmospheric mercury emissions and implications for global biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Song, S.; Selin, N. E.; Soerensen, A. L.; Angot, H.; Artz, R.; Brooks, S.; Brunke, E.-G.; Conley, G.; Dommergue, A.; Ebinghaus, R.; Holsen, T. M.; Jaffe, D. A.; Kang, S.; Kelley, P.; Luke, W. T.; Magand, O.; Marumoto, K.; Pfaffhuber, K. A.; Ren, X.; Sheu, G.-R.; Slemr, F.; Warneke, T.; Weigelt, A.; Weiss-Penzias, P.; Wip, D. C.; Zhang, Q.

    2015-06-01

    We perform global-scale inverse modeling to constrain present-day atmospheric mercury emissions and relevant physiochemical parameters in the GEOS-Chem chemical transport model. We use Bayesian inversion methods combining simulations with GEOS-Chem and ground-based Hg0 observations from regional monitoring networks and individual sites in recent years. Using optimized emissions/parameters, GEOS-Chem better reproduces these ground-based observations and also matches regional over-water Hg0 and wet deposition measurements. The optimized global mercury emission to the atmosphere is ~ 5.8 Gg yr-1. The ocean accounts for 3.2 Gg yr-1 (55 % of the total), and the terrestrial ecosystem is neither a net source nor a net sink of Hg0. The optimized Asian anthropogenic emission of Hg0 (gas elemental mercury) is 650-1770 Mg yr-1, higher than its bottom-up estimates (550-800 Mg yr-1). The ocean parameter inversions suggest that dark oxidation of aqueous elemental mercury is faster, and less mercury is removed from the mixed layer through particle sinking, when compared with current simulations. Parameter changes affect the simulated global ocean mercury budget, particularly mass exchange between the mixed layer and subsurface waters. Based on our inversion results, we re-evaluate the long-term global biogeochemical cycle of mercury, and show that legacy mercury becomes more likely to reside in the terrestrial ecosystem than in the ocean. We estimate that primary anthropogenic mercury contributes up to 23 % of present-day atmospheric deposition.

  7. Top-down constraints on atmospheric mercury emissions and implications for global biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Song, S.; Selin, N. E.; Soerensen, A. L.; Angot, H.; Artz, R.; Brooks, S.; Brunke, E.-G.; Conley, G.; Dommergue, A.; Ebinghaus, R.; Holsen, T. M.; Jaffe, D. A.; Kang, S.; Kelley, P.; Luke, W. T.; Magand, O.; Marumoto, K.; Pfaffhuber, K. A.; Ren, X.; Sheu, G.-R.; Slemr, F.; Warneke, T.; Weigelt, A.; Weiss-Penzias, P.; Wip, D. C.; Zhang, Q.

    2015-02-01

    We perform global-scale inverse modeling to constrain present-day atmospheric mercury emissions and relevant physio-chemical parameters in the GEOS-Chem chemical transport model. We use Bayesian inversion methods combining simulations with GEOS-Chem and ground-based Hg0 observations from regional monitoring networks and individual sites in recent years. Using optimized emissions/parameters, GEOS-Chem better reproduces these ground-based observations, and also matches regional over-water Hg0 and wet deposition measurements. The optimized global mercury emission to the atmosphere is ~5.8 Gg yr-1. The ocean accounts for 3.2 Gg yr-1 (55% of the total), and the terrestrial ecosystem is neither a net source nor a net sink of Hg0. The optimized Asian anthropogenic emission of Hg0 (gas elemental mercury) is 650-1770 Mg yr-1, higher than its bottom-up estimates (550-800 Mg yr-1). The ocean parameter inversions suggest that dark oxidation of aqueous elemental mercury is faster, and less mercury is removed from the mixed layer through particle sinking, when compared with current simulations. Parameter changes affect the simulated global ocean mercury budget, particularly mass exchange between the mixed layer and subsurface waters. Based on our inversion results, we re-evaluate the long-term global biogeochemical cycle of mercury, and show that legacy mercury becomes more likely to reside in the terrestrial ecosystem than in the ocean. We estimate that primary anthropogenic mercury contributes up to 23% of present-day atmospheric deposition.

  8. Influence of biological soil crusts at different successional stages in the implantation of biogeochemical cycles in arid and semiarid zones

    NASA Astrophysics Data System (ADS)

    Gil-Sotres, F.; Miralles, I.; Canton-Castilla, Y.; Domingo, F.; Leiros, M. C.; Trasar-Cepeda, C.

    2012-04-01

    Influence of biological soil crusts at different successional stages in the implantation of biogeochemical cycles in arid and semiarid zones I. Miralles1, F. Gil-Sotres2, Y. Cantón-Castilla3, F. Domingo1, M.C. Leirós2, C. Trasar-Cepeda4 1 Experimental Estation of Arid Zones (CSIC), E-04230 La Cañada de San Urbano, Almería, Spain. 2 Departamento Edafología y Química Agrícola, Grupo de Evaluación de la Calidad del Suelo, Unidad Asociada CSIC, Facultad de Farmacia, Universidad de Santiago de Compostela, E-15782 Santiago de Compostela, Spain. 3 University of Almería, Departamento de Edafología y Química Agrícola, E-04230-La Cañada de San Urbano, Almería, Spain. 4 Departamento Bioquímica del Suelo, IIAG-CSIC, Apartado 122, E-15708 Santiago de Compostela, Spain. Crusts (BSCs) are formed by a close association between soil particles and cyanobacteria, algae, lichens, bryophytes and microfungi in varying proportions. Their habitat is within or immediately on top of the uppermost millimetres of the soil and are the predominant surface cover in arid and semiarid zones. Among the diverse functions developed by BSCs in the ecosystem (hydrology, erosion, soil properties, etc.), one of the most important is its role in nutrient cycling. Within arid and semiarid environments, BSCs have been termed 'mantles of fertility' being considered hotspots of biogeochemical inputs, fixing C, N and P above- and below-ground. However, there are differences in N and C fixation rates between BSCs types. Early successional BSCs, dominated by cyanobacterial species, fix lower quantities of C and N than mature BSCs dominated by lichens. Although the positive effects of BSCs on biogeochemical soil cycles are widely accepted, no previous studies have evaluated the activities of the enzymes involved in C, N and P cycles of BSCs and how they are affected by the successional stage of the BSC. In this work, performed in the Tabernas desert (SE Spain), we studied the hydrolase enzymes

  9. Quantifying the resilience of biogeochemical cycles to environmental change in complex aquatic landscapes

    NASA Astrophysics Data System (ADS)

    Hipsey, M. R.

    2014-12-01

    It is well established that aquatic environments such as lakes, rivers and estuaries display complex system properties in response to anthropogenic forcing. Whilst our ability to characterize these dynamics and model them has advanced considerably for ideal systems, it remains difficult to investigate them across more complex aquatic landscapes. New model approaches are required that are able to accommodate spatial heterogeneity, connectivity between both terrestrial and aquatic sub-systems, and that are suited to capture the complex feedback and co-evolution processes that shape the signatures we observe in biogeochemical cycles. A way forward lies in the integration of the diversity of models of ecohydrology and aquatic system dynamics, with environmental sensing data in a way that balances process-driven and data-driven approaches for exploring landscape function, however many challenges remain. Here we report on a strategy being applied for the lower Murray River, Australia, that integrates models of terrestrial landscapes, riparian ecohydrology and surface water hydrodynamic-biogeochemical models in conjunction with sensor network data. The model system is used to quantify biogeochemical budgets and signatures that characterize individual sub-systems within the landscape, but also to quantify how the landscape as a whole responds to environmental change. Whilst such a coupled system is complex and many uncertainties exist, several theoretically relevant metrics of ecosystem function are being used to guide model validation. Further efforts to improve model predictions through assimilation of observed data using Bayesian Hierarchical Modelling are being explored.

  10. Interdisciplinary research in global biogeochemical cycling Nitrous oxide in terrestrial ecosystems

    NASA Technical Reports Server (NTRS)

    Norman, S. D.; Peterson, D. L.

    1984-01-01

    NASA has begun an interdisciplinary research program to investigate various aspects of Global Biology and Global Habitability. An important element selected for the study of global phenomena is related to biogeochemical cycling. The studies involve a collaboration with recognized scientists in the areas of plant physiology, microbiology, nutrient cycling theory, and related areas. Selected subjects of study include nitrogen cycling dynamics in terrestrial ecosystems with special attention to biosphere/atmosphere interactions, and an identification of sensitive response variables which can be used in ecosystem models based on parameters derived from remotely sensed variables. A description is provided of the progress and findings over the past two years. Attention is given to the characteristics of nitrous oxide emissions, the approach followed in the investigations, the selection of study sites, radiometric measurements, and research in Sequoia.

  11. BIOGEOCHEMICAL CYCLING AND ENVIRONMENTAL STABILITY OF PLUTONIUM RELEVANT TO LONG-TERM STEWARDSHIP OF DOE SITES.

    SciTech Connect

    FRANCIS, A.J.; GILLOW, J.P.; DODGE, C.J.

    2006-11-16

    Pu is generally considered to be relatively immobile in the terrestrial environment, with the exception of transport via airborne and erosion mechanisms. More recently the transport of colloidal forms of Pu is being studied as a mobilization pathway from subsurface contaminated soils and sediments. The overall objective of this research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for retardation of Pu transport.

  12. BIOGEOCHEMICAL CYCLING AND ENVIRONMENTAL STABILITY OF PLUTONIUM RELEVANT TO LONG-TERM STEWARDSHIP OF DOE SITES

    SciTech Connect

    Francis, A.J.; Gillow, J.B.; Dodge, C.J.

    2006-06-01

    Pu is generally considered to be relatively immobile in the terrestrial environment, with the exception of transport via airborne and erosion mechanisms. More recently the transport of colloidal forms of Pu is being studied as a mobilization pathway from subsurface contaminated soils and sediments. The overall objective of this research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for retardation of Pu transport.

  13. The biogeochemical cycle of the adsorbed template. II - Selective adsorption of mononucleotides on adsorbed polynucleotide templates

    NASA Technical Reports Server (NTRS)

    Lazard, Daniel; Lahav, Noam; Orenberg, James B.

    1988-01-01

    Experimental results are presented for the verification of the specific interaction step of the 'adsorbed template' biogeochemical cycle, a simple model for a primitive prebiotic replication system. The experimental system consisted of gypsum as the mineral to which an oligonucleotide template attaches (Poly-C or Poly-U) and (5-prime)-AMP, (5-prime)-GMP, (5-prime)-CMP and (5-prime)-UMP as the interacting biomonomers. When Poly-C or Poly-U were used as adsorbed templates, (5-prime)-GMP and (5-prime)-AMP, respectively, were observed to be the most strongly adsorbed species.

  14. The biogeochemical cycle of the adsorbed template. I - formation of the template

    NASA Technical Reports Server (NTRS)

    Lazard, Daniel; Lahav, Noam; Orenberg, J. B.

    1987-01-01

    Experimental results are presented for the verification of the first adsorption step of the 'adsorbed template' biogeochemical cycle, a simple model for a primitive prebiotic replication system. The adsorption of Poly-C, Poly-U, Poly-A, Poly-G, and 5'-AMP, 5'-GMP, 5'-CMP and 5'-UMP onto gypsum was studied. It was found that under the conditions of the experiment, the polymers have a very high affinity for the mineral surface, while the monomers adsorb much less efficiently.

  15. Abrupt shifts in ecosystem function and intensification of global biogeochemical cycle driven by hydroclimatic extremes

    NASA Astrophysics Data System (ADS)

    Ma, Xuanlong; Huete, Alfredo; Ponce-Campos, Guillermo; Zhang, Yongguang; Xie, Zunyi; Giovannini, Leandro; Cleverly, James; Eamus, Derek

    2016-04-01

    Amplification of the hydrologic cycle as a consequence of global warming is increasing the frequency, intensity, and spatial extent of extreme climate events globally. The potential influences resulting from amplification of the hydro-climatic cycle, coupled with an accelerating warming trend, pose great concerns on the sustainability of terrestrial ecosystems to sequester carbon, maintain biodiversity, provide ecosystem services, food security, and support human livelihood. Despite the great implications, the magnitude, direction, and carry-over effect of these extreme climate events on ecosystem function, remain largely uncertain. To address these pressing issues, we conducted an observational, interdisciplinary study using satellite retrievals of atmospheric CO2 and photosynthesis (chlorophyll fluorescence), and in-situ flux tower measures of ecosystem-atmosphere carbon exchange, to reveal the shifts in ecosystem function across extreme drought and wet periods. We further determine the factors that govern ecosystem sensitivity to hydroclimatic extremes. We focus on Australia but extended our analyses to other global dryland regions due to their significant role in global biogeochemical cycles. Our results revealed dramatic impacts of drought and wet hydroclimatic extremes on ecosystem function, with abrupt changes in vegetation productivity, carbon uptake, and water-use-efficiency between years. Drought resulted in widespread reductions or collapse in the normal patterns of vegetation growth seasonality such that in many cases there was no detectable phenological cycle during extreme drought years. We further identified a significant increasing trend (p < 0.001) in extreme wet year precipitation amounts over Australia and many other global regions, resulting in an increasing trend in magnitude of the episodic carbon sink pulses coupled to each La Niña-induced wet years. This finding is of global biogeochemical significance, with the consequence of amplifying

  16. Scale dependent importance of spatial heterogeneity in biogeochemical cycling at aquifer-river interfaces

    NASA Astrophysics Data System (ADS)

    Krause, Stefan; Blaen, Phillip; Hannah, David; Romejn, Paul; Gomez, Jesus; Kurz, Marie; Fleckenstein, Jan; Schmidt, Christian; Zarnetske, Jay; Cullin, Joe; Ward, Adam; Marti, Eugenia; Drummond, Jennifer; Schmadel, Noah; Knapp, Julia; Klaar, Megan; Mendoza, Clara

    2016-04-01

    The transport and transformation of carbon and nitrogen across aquifer - river interfaces are significantly altered along the streambed passage. Recent investigations have substantially improved the understanding of controls on streambed biogeochemical cycling, outlining a critical impact of exchange fluxes, temporal and spatial coincidence of reaction partners and streambed residence time distributions. Still, there is little understanding of the drivers of the widely observed strong spatial and temporal variability of interlinked carbon and nitrogen turnover at aquifer-river interfaces, including hotspots (locations) and hot moments (time periods) of increased reactivity. Previous research, predominantly with a surface water perspective, has mainly focused on the impact of bedform controlled hyporheic exchange fluxes and the chemical transformation of surface solutes transported along a hyporheic flow path. While such studies may explain nutrient turnover in the hyporheic zones of low-order streams in rather pristine headwater catchments, they fail to explain observations of spatially and temporally more variable nutrient turnover in streambeds with higher structural heterogeneity and relevant concentrations of autochthonous carbon and nitrogen. Here we combine laboratory, field and numerical modeling experiments from plot to stream reach/subcatchment scales to quantify the impacts of variability in physical and biogeochemical streambed properties on hyporheic nutrient (C, N, O) cycling. At the plot scale, hotspots of biogeochemical cycling have been found to be associated with peat and clay layers within streambed sediments, representing areas of significantly increased residence times and oxygen consumption what results in enhanced microbial metabolic activity and nitrogen removal capacity. We present distributed sensor network based up-scaling methods that allow identification of such features at larger reach scale. Numerical modeling based generalization

  17. The contribution of plant-soil interactions to biogeochemical cycles in a changing world

    NASA Astrophysics Data System (ADS)

    Pregitzer, K.

    2005-12-01

    In terrestrial ecosystems, plants are the transducers that provide the energy for microbial metabolism through root exudation, cell sloughing, and the turnover of leaves and roots. Changes in the Earth's atmosphere such as increasing concentrations of atmospheric carbon dioxide, tropospheric ozone, and the atmospheric deposition of nitrogen, will modify plant net primary productivity (NPP) and plant carbon (C) allocation. These changes will, in turn, initiate a series of biochemical alterations in dead leaves and fine roots, responses which move through the soil to structure food webs and control rates of biogeochemical cycling. In our conceptual framework, plant physiology, plant tissue biochemistry, and the production and mortality of plant modules (leaves and roots) are pivotal control points in the soil for the regulation of ecosystem biogeochemistry. In other words, understanding how plant form and function as well as the associated microbial dynamics respond to changes in the Earth's atmosphere is important to understanding the biogeochemical feedbacks which may ultimately constrain long-term ecosystem responses. We will review examples of how changes in the Earth's atmosphere directly modify plant growth and C allocation, which initiates a series of physiological and biochemical changes in live and dead leaves and fine roots. We will then examine how these plant responses structure rhizosphere food webs and control rates of microbial metabolism. Microbial enzyme activity regulates many of the transformation and weathering processes in the soil, thus changes in the microbial community can strongly alter ecosystem biogeochemistry. For example, we will explore how plants and microbes are linked to ecosystem-level feedbacks between soil respiration, dissolved inorganic carbon (DIC), and dissolved organic carbon (DOC) leaching. The basic premise of our conceptual model is that altered atmospheric chemistry directly impacts plant form and function. Theses human

  18. Southern Sierra Critical Zone Observatory: integrating water cycle and biogeochemical processes across the rain-snow transition

    NASA Astrophysics Data System (ADS)

    Bales, R.; Boyer, B.; Conklin, M.; Goulden, M.; Hopmans, J.; Hunsaker, C.; Johnson, D.; Kirchner, J.; Tague, C.

    2007-12-01

    The Southern Sierra Critical Zone Observatory (CZO) is establishing a rain-snow transition research platform for research by investigators from multiple disciplines and a research program aimed at yielding general knowledge and tools for understanding the interactions between water, atmosphere, ecosystems and landforms in the critical zone. A primary, overarching goal is to understand how critical zone processes control fluxes and stores of water across the landscape, and how the water cycle modulates (bio)geochemical, biological, geomorphological and soil processes in the critical zone. Five science questions define and focus the core measurement and research program: i) how do coupled hydrologic and biogeochemical fluxes vary across the rain-snow transition, ii) what is the role of extreme hydrologic events in water and biogeochemical balances, iii) to what extent does vegetation modulate or actively control the primary subsurface fluxes of water and nutrients, iv) over what time and space scales, and during what seasons, are short-circuit pathways dominant in the critical zone, and v) how does the presence of a seasonal snowpack affect the subsurface, critical zone, soils, geomorphology, biogeochemistry and hydrology, and how will the system respond as climate warms and snowpacks recede. Some unique features of the Sierra Nevada system as compared to more mesic sites include: i) hydrophobic soils, ii) islands of fertility in soils, iii) dominant role of catastrophic events, e.g. fire, and iv) spatial decoupling of decomposition from root uptake in soil profile. The rationale for measurement design, including the value of high-frequency data will be illustrated, as will the strategy for providing community data and information, and educational programs.

  19. Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

    NASA Astrophysics Data System (ADS)

    Smith, P.; Cotrufo, M. F.; Rumpel, C.; Paustian, K.; Kuikman, P. J.; Elliott, J. A.; McDowell, R.; Griffiths, R. I.; Asakawa, S.; Bustamante, M.; House, J. I.; Sobocká, J.; Harper, R.; Pan, G.; West, P. C.; Gerber, J. S.; Clark, J. M.; Adhya, T.; Scholes, R. J.; Scholes, M. C.

    2015-06-01

    Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can either provide co-benefits to other services or can result in trade-offs. In this critical review, we report the state-of-the-art understanding concerning the biogeochemical cycles and biodiversity in soil, and relate these to the provisioning, regulating, supporting and cultural ecosystem services which they underpin. We then outline key knowledge gaps and research challenges, before providing recommendations for management activities to support the continued delivery of ecosystem services from soils. We conclude that although there are knowledge gaps that require further research, enough is known to start improving soils globally. The main challenge is in finding ways to share knowledge with soil managers and policy-makers, so that best-practice management can be implemented. A key element of this knowledge sharing must be in raising awareness of the multiple ecosystem services underpinned by soils, and the natural capital they provide. The International Year of Soils in 2015 presents the perfect opportunity to begin a step-change in how we harness scientific knowledge to bring about more sustainable use of soils for a secure global society.

  20. Plant impact on the biogeochemical cycle of silicon and related weathering processes

    NASA Astrophysics Data System (ADS)

    Alexandre, Anne; Meunier, Jean-Dominique; Colin, Fabrice; Koud, Jean-Mathias

    1997-02-01

    The contribution of plants to the biogeochemical cycle of Si and related weathering processes was studied in an equatorial rainforest ecosystem (Congo) where the biologic turnover of Si is high (58 to 76 kg/ha/y). Litterfall leaves, a soil profile and groundwaters were analysed. Phytoliths and organic matter have a similar distribution with depth in the soil profile. The model of a bicompartmental distribution of organic matter is applied to phytolith distribution and shows that about 92% of the biogenic silica input is rapidly recycled while about 8% of the biogenic silica input supplies a stable pool of phytoliths, with a lower turnover. Reprecipitation of silica was observed at the base of the soil profile, indicating a local geochemical environment that is oversaturated with respect to amorphous silica. A balance in biogeochemical cycle of Si requires that the vegetation absorb dissolved silicon released from weathering of minerals, which otherwise would be available for mineral neoformation or export from the profile towards regional drainages. Plant uptake of Si increases the chemical weathering rate without increasing the denudation rate. This study shows that the uptake, storage, and release of Si by the vegetation have to be taken into account when using dissolved Si for tracing chemical weathering dynamics.

  1. Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

    PubMed Central

    Zhao, Mengxin; Xue, Kai; Wang, Feng; Liu, Shanshan; Bai, Shijie; Sun, Bo; Zhou, Jizhong; Yang, Yunfeng

    2014-01-01

    Despite microbes' key roles in driving biogeochemical cycles, the mechanism of microbe-mediated feedbacks to global changes remains elusive. Recently, soil transplant has been successfully established as a proxy to simulate climate changes, as the current trend of global warming coherently causes range shifts toward higher latitudes. Four years after southward soil transplant over large transects in China, we found that microbial functional diversity was increased, in addition to concurrent changes in microbial biomass, soil nutrient content and functional processes involved in the nitrogen cycle. However, soil transplant effects could be overridden by maize cropping, which was attributed to a negative interaction. Strikingly, abundances of nitrogen and carbon cycle genes were increased by these field experiments simulating global change, coinciding with higher soil nitrification potential and carbon dioxide (CO2) efflux. Further investigation revealed strong correlations between carbon cycle genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycle genes and nitrification. These findings suggest that changes of soil carbon and nitrogen cycles by soil transplant and cropping were predictable by measuring microbial functional potentials, contributing to a better mechanistic understanding of these soil functional processes and suggesting a potential to incorporate microbial communities in greenhouse gas emission modeling. PMID:24694714

  2. Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping.

    PubMed

    Zhao, Mengxin; Xue, Kai; Wang, Feng; Liu, Shanshan; Bai, Shijie; Sun, Bo; Zhou, Jizhong; Yang, Yunfeng

    2014-10-01

    Despite microbes' key roles in driving biogeochemical cycles, the mechanism of microbe-mediated feedbacks to global changes remains elusive. Recently, soil transplant has been successfully established as a proxy to simulate climate changes, as the current trend of global warming coherently causes range shifts toward higher latitudes. Four years after southward soil transplant over large transects in China, we found that microbial functional diversity was increased, in addition to concurrent changes in microbial biomass, soil nutrient content and functional processes involved in the nitrogen cycle. However, soil transplant effects could be overridden by maize cropping, which was attributed to a negative interaction. Strikingly, abundances of nitrogen and carbon cycle genes were increased by these field experiments simulating global change, coinciding with higher soil nitrification potential and carbon dioxide (CO2) efflux. Further investigation revealed strong correlations between carbon cycle genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycle genes and nitrification. These findings suggest that changes of soil carbon and nitrogen cycles by soil transplant and cropping were predictable by measuring microbial functional potentials, contributing to a better mechanistic understanding of these soil functional processes and suggesting a potential to incorporate microbial communities in greenhouse gas emission modeling.

  3. Biogeochemical Cycling and Environmental Stability of Pu Relevant to Long-Term Stewardship of DOE Sites

    SciTech Connect

    Santschi, Peter H.

    2006-06-01

    The overall objective of this proposed research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Central to Pu cycling (transport initiation to immobilization) is the role of microorganisms. The hypothesis underlying this proposal is that microbial activity is the causative agent in initiating the mobilization of Pu in near-surface environments: through the transformation of Pu associated with solid phases, production of extracellular polymeric substances (EPS) carrier phases, and the creation of microenvironments. Also, microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for Pu transport retardation.

  4. Biogeochemical Cycling and Environmental Stability of Pu Relevant to Long-Term Stewardship of DOE Sites

    SciTech Connect

    Honeyman, Bruce D.; Francis, A.J.; Gillow, Jeffrey B.; Dodge, Cleveland J.; Santschi, Peter H.; Chin-Chang Hung; Diaz, Angelique; Tinnacher, Ruth; Roberts, Kimberly; Schwehr, Kathy

    2006-04-05

    The overall objective of this research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Central to Pu cycling (transport initiation and immobilization) is the role of microorganisms. The hypothesis underlying this work is that microbial activity is the causative agent in initiating the mobilization of Pu in near-surface environments: through the transformation of Pu associated with solid phases, production of extracellular polymeric substances (EPS) carrier phases and the creation of microenvironments. Also, microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for Pu transport retardation.

  5. Biogeochemical Cycling and Environmental Stability of Pu Relevant to Long-Term Stewardship of DOE Sites

    SciTech Connect

    Francis, Arokiasamy J.; Santschi, Peter H.; Honeyman, Bruce D.

    2005-06-01

    The overall objective of this proposed research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Central to Pu cycling (transport initiation to immobilization) is the role of microorganisms. The hypothesis underlying this proposal is that microbial activity is the causative agent in initiating the mobilization of Pu in near-surface environments: through the transformation of Pu associated with solid phases, production of extracellular polymeric substances (EPS) carrier phases, and the creation of microenvironments. Also, microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for Pu transport retardation.

  6. Ocean viruses and their effects on microbial communities and biogeochemical cycles.

    PubMed

    Weitz, Joshua S; Wilhelm, Steven W

    2012-01-01

    Viruses are the most abundant life forms on Earth, with an estimated 10(31) total viruses globally. The majority of these viruses infect microbes, whether bacteria, archaea or microeukaryotes. Given the importance of microbes in driving global biogeochemical cycles, it would seem, based on numerical abundances alone, that viruses also play an important role in the global cycling of carbon and nutrients. However, the importance of viruses in controlling host populations and ecosystem functions, such as the regeneration, storage and export of carbon and other nutrients, remains unresolved. Here, we report on advances in the study of ecological effects of viruses of microbes. In doing so, we focus on an area of increasing importance: the role that ocean viruses play in shaping microbial population sizes as well as in regenerating carbon and other nutrients.

  7. Quantifying the effects of mountain pine beetle infestation on water and biogeochemical cycles at multiple spatial and temporal scales

    NASA Astrophysics Data System (ADS)

    Brooks, P. D.; Harpold, A. A.; Somor, A. J.; Troch, P. A.; Gochis, D. J.; Ewers, B. E.; Pendall, E.; Biederman, J. A.; Reed, D.; Barnard, H. R.; Whitehouse, F.; Aston, T.; Borkhuu, B.

    2010-12-01

    Unprecedented levels of bark beetle infestation over the last decade have radically altered forest structure across millions of hectares of Western U.S. montane environments. The widespread extent of this disturbance presents a major challenge for governments and resource managers who lack a predictive understanding of how water and biogeochemical cycles will respond to this disturbance over various temporal and spatial scales. There is a widespread perception, largely based on hydrological responses to fire or logging, that a reduction in both transpiration and interception following tree death will increase soil water availability and catchment water yield. However, few studies have directly addressed the effects of insect-induced forest decline on water and biogeochemical cycling. We address this knowledge gap using observations and modeling at scales from 100 to 109 m2 across study sites in CO and WY that vary in the intensity and timing of beetle infestation and tree death. Our focus on multiple sites with different levels of impact allows us to address two broad, organizing questions: How do changes in vegetation structure associated with MPB alter the partitioning of energy and water? And How do these changes in energy and water availability affect local to regional scale water and biogeochemical cycles? This presentation will focus primarily on energy balance and water partitioning, providing context for ongoing biogeochemical work. During the growing season, stand-scale transpiration declines rapidly and soil moisture increases following infestation, consistent with streamflow data from regional catchments that shows an increase in baseflow following widespread attack. During the winter and spring, stand scale snow surveys and continuous snow depth sensors suggested that the variability in snow cover decreased as the severity of beetle impact increases, but there were no significant stand-scale differences in snow depth among levels of impact. This is due

  8. Biogeochemical cycling of cadmium isotopes along a high-resolution section through the North Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Conway, Tim M.; John, Seth G.

    2015-01-01

    Cadmium (Cd) is a bioactive trace element in the oceans, with a nutrient-like distribution that closely matches dissolved phosphate. Seawater-dissolved stable Cd isotope ratios (δ114Cd) are a relatively new parameter, which show much promise for furthering our understanding of the biogeochemical cycling of Cd in the oceans. Here we present a high-resolution paired section of dissolved Cd concentrations and dissolved δ114Cd from 21 open-ocean stations along the US GEOTRACES GA03 transect through the North Atlantic Ocean. Dissolved Cd concentrations along the section are strongly influenced by water-mass distribution and the cycling of Cd. The highest dissolved Cd concentrations (400-540 pmol kg-1) are associated with Antarctic-sourced water masses, whilst biological uptake in the surface ocean results in a strong vertical gradient in dissolved Cd towards the surface, reaching as low as 0.03 pmol kg-1 in western surface waters. Dissolved δ114Cd is also characterized by a vertical gradient from ∼+0.2‰ in the deep ocean to +2‰ to +5‰ in the Cd-depleted surface ocean (relative to NIST SRM 3108). This variability in δ114Cd can be ascribed to mixing of Antarctic and North Atlantic water masses, together with fractionation due to in situ biological uptake of light Cd in the very surface ocean. Subtle deviations from this overall pattern of dissolved Cd concentration and dissolved δ114Cd are observed within low-oxygen waters off North Africa, where a dissolved Cd deficit relative to phosphate is associated with higher dissolved δ114Cd values. Together with elevated particulate Cd and Ba, this suggests that Cd sulfide precipitation is occurring within the water column of the North Atlantic, constituting a potentially important sink for isotopically light Cd. Additionally, the first measurements of dissolved δ114Cd within a hydrothermal plume at the Mid-Atlantic Ridge show that Cd is scavenged from the dissolved phase, leaving the remnant dissolved Cd

  9. Role of sea ice in global biogeochemical cycles: emerging views and challenges

    NASA Astrophysics Data System (ADS)

    Vancoppenolle, Martin; Meiners, Klaus M.; Michel, Christine; Bopp, Laurent; Brabant, Frédéric; Carnat, Gauthier; Delille, Bruno; Lannuzel, Delphine; Madec, Gurvan; Moreau, Sébastien; Tison, Jean-Louis; van der Merwe, Pier

    2013-11-01

    Observations from the last decade suggest an important role of sea ice in the global biogeochemical cycles, promoted by (i) active biological and chemical processes within the sea ice; (ii) fluid and gas exchanges at the sea ice interface through an often permeable sea ice cover; and (iii) tight physical, biological and chemical interactions between the sea ice, the ocean and the atmosphere. Photosynthetic micro-organisms in sea ice thrive in liquid brine inclusions encased in a pure ice matrix, where they find suitable light and nutrient levels. They extend the production season, provide a winter and early spring food source, and contribute to organic carbon export to depth. Under-ice and ice edge phytoplankton blooms occur when ice retreats, favoured by increasing light, stratification, and by the release of material into the water column. In particular, the release of iron - highly concentrated in sea ice - could have large effects in the iron-limited Southern Ocean. The export of inorganic carbon transport by brine sinking below the mixed layer, calcium carbonate precipitation in sea ice, as well as active ice-atmosphere carbon dioxide (CO2) fluxes, could play a central role in the marine carbon cycle. Sea ice processes could also significantly contribute to the sulphur cycle through the large production by ice algae of dimethylsulfoniopropionate (DMSP), the precursor of sulphate aerosols, which as cloud condensation nuclei have a potential cooling effect on the planet. Finally, the sea ice zone supports significant ocean-atmosphere methane (CH4) fluxes, while saline ice surfaces activate springtime atmospheric bromine chemistry, setting ground for tropospheric ozone depletion events observed near both poles. All these mechanisms are generally known, but neither precisely understood nor quantified at large scales. As polar regions are rapidly changing, understanding the large-scale polar marine biogeochemical processes and their future evolution is of high

  10. Changes in mineral soil biogeochemical cycling and environmental conditions following tree harvest in the Northeast

    NASA Astrophysics Data System (ADS)

    Vario, C.; Friedland, A.

    2012-12-01

    to a minimum of 53 Mg ha-1 in the 75 year old stand. In our carbon flux measurements, we observed higher DOC concentrations in lysimeter samples collected at 30 cm at 12 years after harvest. We have also documented consistently higher soil temperatures across summer months at 50 cm below the mineral soil in the recently clear-cut site at Bartlett Experimental Forest. These changes in biogeochemical and environmental conditions suggest that forest clearing does affect mineral soil, and our findings may help identify a mechanism to explain the observed carbon loss from soils in clear-cut forests.

  11. Benthic biogeochemical cycling of mercury in two contaminated northern Adriatic coastal lagoons

    NASA Astrophysics Data System (ADS)

    Covelli, Stefano; Emili, Andrea; Acquavita, Alessandro; Koron, Neža; Faganeli, Jadran

    2011-10-01

    Previous research recognized most of the Northern Adriatic coastal lagoon environments as contaminated by mercury (Hg) from multiple anthropogenic sources. Among them, the Pialassa Baiona (P.B.) Lagoon, located near the city of Ravenna (Italy), received between 100 and 200 tons of Hg, generated by an acetaldehyde factory in the period 1957-1977. Further east, the Grado Lagoon has been mainly affected by a long-term Hg input from the Idrija mine (western Slovenia) through the Isonzo River since the 16th century. Hg cycling at the sediment-water interface (SWI) of the two lagoons was investigated and compared by means of an in situ benthic chamber, estimating diffusive Hg and Methyl-Hg fluxes in the summer season. Major chemical features in porewaters (Fe, Mn, H 2S, dissolved inorganic (DIC) and organic carbon (DOC), nutrients) and in the solid phase (C org, N and S) were also explored to understand the general biogeochemical conditions of the system in response to benthic respiration. The daily integrated flux for the methylated Hg form was extremely low in P.B. Lagoon, accounting for only 7% of the corresponding flux calculated for the Grado Lagoon. Despite a higher sedimentary Hg content in the P.B. Lagoon (14.4-79.0 μg g -1) compared to the Grado Lagoon (10.7-12.5 μg g -1), the in situ fluxes of Hg in the two experimental sites appeared similar. A selective sequential extraction procedure was applied to the solid phase, showing that the stable crystalline mineral phase cinnabar (HgS) is the predominant Hg fraction (about 50%) in the Grado Lagoon surface sediments. Conversely, Hg mobilization and sequestration in the P.B. Lagoon is related to the extremely anoxic redox conditions of the system where the intense sulfate reduction, by the release of sulfur and the formation of sulfides, limits the metal recycling at the SWI and its availability for methylation processes. Thus, the environmental conditions at the SWI in the P.B. Lagoon seem to represent a natural

  12. Biogeochemical cycles in tropical Oceania: insights from Magnesium isotopes in the Liwu river, Taiwan.

    NASA Astrophysics Data System (ADS)

    Bedja, Imene; Galy, Albert

    2016-04-01

    We analyzed the isotopic composition of dissolved Mg in the Liwu catchment, Taiwan, impacted by typhoon events to understand the control on the temporal variability of water chemistry. The river chemistry is driven by the mixing of three water masses, characterized by constant and distinct chemistry composition: Rapid Surface Runoff (RSR), Slow Surface Runoff (SSR) and Deep Ground Water (DG). The relative contribution of these end members is estimated using a hydrograph separation model. A dense tropical forest covers the Liwu catchment and might affect the chemistry of the river. In fact, plants absorb their essential nutrient such as magnesium (Mg) from the draining water. Such biological pumping introduces an isotopic fractionation in the river water. With the consideration of other processes like chemical weathering and hydrological mixture, this study aims to bring out the biogeochemical cycle of Mg and consequently to quantify the feedback of biological factor on the river chemistry. Magnesium has three stables isotopes (24Mg, 25Mg and 26Mg) and the 26Mg/24Mg ratio (expressed as δ26Mg) is accurately measured, with precision of 0.09‰ at 95% confidence level, using the standard sample bracketing technique by MC-ICP-MS. The δ26Mg of sampled water range between: -0.96‰ and -1.44 ‰ on the DSM3 scale but is poorly correlated with the relative proportion of Mg brought by each of the RSR, SSR and DG end-members ruling out a pure hydrological control on the riverine δ26Mg. The δ26Mg can also record processes since 26Mg is preferentially scavenged during precipitation of secondary clay minerals or uptake by the biomass. However, the elemental uptake of silicon (Si) versus Mg is greatly different between those two processes. To unravel the dominant process of Mg isotope fractionation, we will discuss a coupling of δ26Mg values of the end-members reflecting the incorporation of Mg during clay formation and biomass uptake, with the masse balance of elemental

  13. Urbanization Impacts on Tree Canopies: The Unexplored Link Between Canopy Epiphytes and Pacific Northwest Forest Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Prather, H.; Rosenstiel, T. N.

    2014-12-01

    Canopy-dwelling cryptogamic plants (i.e. lichens and mosses) serve important roles in biogeochemical cycles worldwide and are of particular importance to biogeochemical cycling in Pacific Northwest forests. Epiphytic lichens and mosses respond sensitively to both direct and indirect effects of global change, as evidenced by distinct changes in epiphyte community structure. Yet, few studies have explored how shifting epiphytic communities, resulting from changing climate and increasing air pollutant exposure, may greatly impact biogeochemical cycles of the forests they inhabit. We present the first study investigating how urbanization, as a proxy for global change, impacts epiphytic community structure and functional biodiversity and address the impending effects on Pacific Northwest forest biogeochemical cycles. We discuss the results of paired ground and arboreal epiphyte surveys across an urban to rural gradient in Portland, Oregon. Three research sites with varying distance (0km, 74km, and 109km) from urban center were surveyed and epiphytic biodiversity was described. Pronounced shifts in epiphyte community structure were observed downwind of the Portland metro region. These results suggest that the impacts of urbanization may have significant and surprisingly far-reaching impacts on forested ecosystems in the Pacific Northwest. The impacts of an altered ground and arboreal epiphytic community on Pacific Northwest forest biogeochemical processes will be discussed.

  14. Modeling carbon cycle responses to tree mortality: linking microbial and biogeochemical changes

    NASA Astrophysics Data System (ADS)

    Moore, D. J.; Trahan, N. A.; Dynes, E. L.; Zobitz, J. M.; Gallery, R.

    2013-12-01

    Amid a worldwide increase in tree mortality, mountain pine beetles (Dendroctonus ponderosae Hopkins) have killed billions of trees from Mexico to Alaska in the last 13 years. This mortality is predicted to influence important carbon, water and energy balance feedbacks on the Earth system. We studied changes in soil biogeochemical cycling and microbial community structure after tree mortality. We show, using a decade long chronosequence, that tree mortality causes no increase in total respiration from local to watershed scales, with corresponding changes in biogeochemical pools of nitrogen and phosphorus. We also found comparable declines in both gross primary productivity and respiration suggesting little change in net flux. We tested the mechanisms controlling these patterns using an ecosystem model; contrasting a simplified microbial subroutine with a 'dead soil' model. We coupled our modeling work with direct measurements of microbial biomass, enzyme kinetics and community structure. The transitory recovery of respiration 6-7 years after mortality was associated with increased microbial biomass, increased incorporation of leaf litter carbon into soil organic matter, and was followed by a secondary decline in respiration during years 8-10. Our findings are consistent with the mechanism of reduced input of new carbon causing a decline in microbial biomass rather than an increased output of older carbon.

  15. Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Le Quéré, C.; Buitenhuis, E. T.; Moriarty, R.; Alvain, S.; Aumont, O.; Bopp, L.; Chollet, S.; Enright, C.; Franklin, D. J.; Geider, R. J.; Harrison, S. P.; Hirst, A.; Larsen, S.; Legendre, L.; Platt, T.; Prentice, I. C.; Rivkin, R. B.; Sathyendranath, S.; Stephens, N.; Vogt, M.; Sailley, S.; Vallina, S. M.

    2015-07-01

    Global ocean biogeochemistry models currently employed in climate change projections use highly simplified representations of pelagic food webs. These food webs do not necessarily include critical pathways by which ecosystems interact with ocean biogeochemistry and climate. Here we present a global biogeochemical model which incorporates ecosystem dynamics based on the representation of ten plankton functional types (PFTs); six types of phytoplankton, three types of zooplankton, and heterotrophic bacteria. We improved the representation of zooplankton dynamics in our model through (a) the explicit inclusion of large, slow-growing zooplankton, and (b) the introduction of trophic cascades among the three zooplankton types. We use the model to quantitatively assess the relative roles of iron vs. grazing in determining phytoplankton biomass in the Southern Ocean High Nutrient Low Chlorophyll (HNLC) region during summer. When model simulations do not represent crustacean macrozooplankton grazing, they systematically overestimate Southern Ocean chlorophyll biomass during the summer, even when there was no iron deposition from dust. When model simulations included the developments of the zooplankton component, the simulation of phytoplankton biomass improved and the high chlorophyll summer bias in the Southern Ocean HNLC region largely disappeared. Our model results suggest that the observed low phytoplankton biomass in the Southern Ocean during summer is primarily explained by the dynamics of the Southern Ocean zooplankton community rather than iron limitation. This result has implications for the representation of global biogeochemical cycles in models as zooplankton faecal pellets sink rapidly and partly control the carbon export to the intermediate and deep ocean.

  16. Numerical modeling of watershed-scale radiocesium transport coupled with biogeochemical cycling in forests

    NASA Astrophysics Data System (ADS)

    Mori, K.; Tada, K.; Tawara, Y.; Tosaka, H.; Ohno, K.; Asami, M.; Kosaka, K.

    2015-12-01

    Since the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident, intensive monitoring and modeling works on radionuclide transfer in environment have been carried out. Although Cesium (Cs) concentration has been attenuating due to both physical and environmental half-life (i.e., wash-off by water and sediment), the attenuation rate depends clearly on the type of land use and land cover. In the Fukushima case, studying the migration in forest land use is important for predicting the long-term behavior of Cs because most of the contaminated region is covered by forests. Atmospheric fallout is characterized by complicated behavior in biogeochemical cycle in forests which can be described by biotic/abiotic interactions between many components. In developing conceptual and mathematical model on Cs transfer in forest ecosystem, defining the dominant components and their interactions are crucial issues (BIOMASS, 1997-2001). However, the modeling of fate and transport in geosphere after Cs exports from the forest ecosystem is often ignored. An integrated watershed modeling for simulating spatiotemporal redistribution of Cs that includes the entire region from source to mouth and surface to subsurface, has been recently developed. Since the deposited Cs can migrate due to water and sediment movement, the different species (i.e., dissolved and suspended) and their interactions are key issues in the modeling. However, the initial inventory as source-term was simplified to be homogeneous and time-independent, and biogeochemical cycle in forests was not explicitly considered. Consequently, it was difficult to evaluate the regionally-inherent characteristics which differ according to land uses, even if the model was well calibrated. In this study, we combine the different advantages in modeling of forest ecosystem and watershed. This enable to include more realistic Cs deposition and time series of inventory can be forced over the land surface. These processes are integrated

  17. The biogeochemical sulfur cycle in the marine boundary layer over the Northeast Pacific Ocean

    NASA Technical Reports Server (NTRS)

    Bates, T. S.; Johnson, J. E.; Quinn, P. K.; Goldan, P. D.; Kuster, W. C.

    1990-01-01

    The major components of the marine boundary layer biogeochemical sulfur cycle were measured simultaneously onshore and off the coast of Washington State, U.S.A. during May 1987. Seawater dimethysulfide (DMS) concentrations on the continental shelf were strongly influenced by coastal upwelling. Concentration further offshore were typical of summer values (2.2 nmol/l) at this latitude. Although seawater DMS concentrations were high on the biologically productive continental shelf (2-12 nmol/l), this region had no measurable effect on atmospheric DMS concentrations. Atmospheric DMS concentrations (0.1-12 nmol/l), however, were extremely dependent upon wind speed and boundary layer height. Although there appeared to be an appreciable input of nonsea-salt sulfate to the marine boundary layer from the free troposphere, the local flux of DMS from the ocean to the atmosphere was sufficient to balance the remainder of the sulfur budget.

  18. Biogeochemical cycling of selenium in the San Joaquin Valley, California, USA

    USGS Publications Warehouse

    Presser, T.S.; Ohlendorf, H.M.

    1987-01-01

    Subsurface agricultural drainage waters from western San Joaquin Valley, California, were found to contain elevated concentrations of the element selenium in the form of selenate. In 1978, these drainage waters began to replace previous input to Kesterson Reservoir, a pond system within Kesterson National Wildlife Refuge; this substitution was completed by 1982. In the 1983 nesting season, unusual rates of deformity and death in embryos and hatchlings of wild aquatic birds (up to 64% of eared grebe and American coot nests) occurred at the refuge and were attributed to selenium toxicosis. Features necessary for contamination to have taken place included geologic setting, climate, soil type, availability of imported irrigation water, type of irrigation, and the unique chemical properties of selenium. The mechanisms of biogeochemical cycling raise questions about other ecosystems and human exposure.

  19. Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

    NASA Astrophysics Data System (ADS)

    Smith, P.; Cotrufo, M. F.; Rumpel, C.; Paustian, K.; Kuikman, P. J.; Elliott, J. A.; McDowell, R.; Griffiths, R. I.; Asakawa, S.; Bustamante, M.; House, J. I.; Sobocká, J.; Harper, R.; Pan, G.; West, P. C.; Gerber, J. S.; Clark, J. M.; Adhya, T.; Scholes, R. J.; Scholes, M. C.

    2015-11-01

    Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient, and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can either provide co-benefits to other services or result in trade-offs. In this critical review, we report the state-of-the-art understanding concerning the biogeochemical cycles and biodiversity in soil, and relate these to the provisioning, regulating, supporting, and cultural ecosystem services which they underpin. We then outline key knowledge gaps and research challenges, before providing recommendations for management activities to support the continued delivery of ecosystem services from soils. We conclude that, although soils are complex, there are still knowledge gaps, and fundamental research is still needed to better understand the relationships between different facets of soils and the array of ecosystem services they underpin, enough is known to implement best practices now. There is a tendency among soil scientists to dwell on the complexity and knowledge gaps rather than to focus on what we do know and how this knowledge can be put to use to improve the delivery of ecosystem services. A significant challenge is to find effective ways to share knowledge with soil managers and policy makers so that best management can be implemented. A key element of this knowledge exchange must be to raise awareness of the ecosystems services underpinned by soils and thus the natural capital they provide. We know enough to start moving in the right direction while we conduct research to fill in our knowledge gaps. The lasting legacy of the International Year of Soils in 2015 should be for soil scientists to work together with policy makers and land managers to put soils at the centre of environmental policy making and land management decisions.

  20. The Coordination and Harmonics of Biogeochemical Cycles in North Inlet, SC Salt Marshes

    NASA Astrophysics Data System (ADS)

    Morris, J. T.

    2015-12-01

    North Inlet is a pristine estuary within a small coastal watershed with minimal surface water input or human impact. North Inlet exchanges its water with the coastal ocean with a turnover time of about 0.5 per day. Its marshes are dominated by the grass Spartina alterniflora. Growth rates of Spartina have been measured monthly on permanent plots in North Inlet since 1984, and concentrations of porewater ammonium and phosphate, and sulfide have been measured monthly over depth (10-100 cm) since 1994. The salt marsh shows pronounced seasonal biogeochemical cycles that are highly correlated. Ammonium, phosphate and sulfide concentrations all peak in August-October and are minimal during February-April. Mean monthly ammonium concentration varies between 42 and 87 μM, phosphate between 3 and 18 μM, and sulfide between 8 and 87 μM. Monthly growth rates of Spartina range from 91 to 111 g dry weight m-2 between April and September. The integrated total aboveground production is 25 mol C m-2 yr-1. The inventories of N and P in porewater are small fractions of what is required to support primary production. Primary production is N-limited and this is consistent with the N:P ratio declining from 14 during early spring to 5 in late summer. There are losses, especially of N, from drainage, denitrification, and export of organic production. These have to be compensated by gains from N fixation, most likely from coupled sulfate reduction. There is also a coupling between sulfide, iron, and phosphorous that appears to conserve P during the winter and generate soluble P during the active growing season. These couplings coordinate the biogeochemical cycles, and this extends to the tidal creeks that are dominated by benthic sources of nutrients.

  1. The impacts of climate change and human activities on biogeochemical cycles on the Qinghai-Tibetan Plateau.

    PubMed

    Chen, Huai; Zhu, Qiuan; Peng, Changhui; Wu, Ning; Wang, Yanfen; Fang, Xiuqing; Gao, Yongheng; Zhu, Dan; Yang, Gang; Tian, Jianqing; Kang, Xiaoming; Piao, Shilong; Ouyang, Hua; Xiang, Wenhua; Luo, Zhibin; Jiang, Hong; Song, Xingzhang; Zhang, Yao; Yu, Guirui; Zhao, Xinquan; Gong, Peng; Yao, Tandong; Wu, Jianghua

    2013-10-01

    With a pace of about twice the observed rate of global warming, the temperature on the Qinghai-Tibetan Plateau (Earth's 'third pole') has increased by 0.2 °C per decade over the past 50 years, which results in significant permafrost thawing and glacier retreat. Our review suggested that warming enhanced net primary production and soil respiration, decreased methane (CH(4)) emissions from wetlands and increased CH(4) consumption of meadows, but might increase CH(4) emissions from lakes. Warming-induced permafrost thawing and glaciers melting would also result in substantial emission of old carbon dioxide (CO(2)) and CH(4). Nitrous oxide (N(2)O) emission was not stimulated by warming itself, but might be slightly enhanced by wetting. However, there are many uncertainties in such biogeochemical cycles under climate change. Human activities (e.g. grazing, land cover changes) further modified the biogeochemical cycles and amplified such uncertainties on the plateau. If the projected warming and wetting continues, the future biogeochemical cycles will be more complicated. So facing research in this field is an ongoing challenge of integrating field observations with process-based ecosystem models to predict the impacts of future climate change and human activities at various temporal and spatial scales. To reduce the uncertainties and to improve the precision of the predictions of the impacts of climate change and human activities on biogeochemical cycles, efforts should focus on conducting more field observation studies, integrating data within improved models, and developing new knowledge about coupling among carbon, nitrogen, and phosphorus biogeochemical cycles as well as about the role of microbes in these cycles.

  2. Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Le Quéré, Corinne; Buitenhuis, Erik T.; Moriarty, Róisín; Alvain, Séverine; Aumont, Olivier; Bopp, Laurent; Chollet, Sophie; Enright, Clare; Franklin, Daniel J.; Geider, Richard J.; Harrison, Sandy P.; Hirst, Andrew G.; Larsen, Stuart; Legendre, Louis; Platt, Trevor; Prentice, I. Colin; Rivkin, Richard B.; Sailley, Sévrine; Sathyendranath, Shubha; Stephens, Nick; Vogt, Meike; Vallina, Sergio M.

    2016-07-01

    Global ocean biogeochemistry models currently employed in climate change projections use highly simplified representations of pelagic food webs. These food webs do not necessarily include critical pathways by which ecosystems interact with ocean biogeochemistry and climate. Here we present a global biogeochemical model which incorporates ecosystem dynamics based on the representation of ten plankton functional types (PFTs): six types of phytoplankton, three types of zooplankton, and heterotrophic procaryotes. We improved the representation of zooplankton dynamics in our model through (a) the explicit inclusion of large, slow-growing macrozooplankton (e.g. krill), and (b) the introduction of trophic cascades among the three zooplankton types. We use the model to quantitatively assess the relative roles of iron vs. grazing in determining phytoplankton biomass in the Southern Ocean high-nutrient low-chlorophyll (HNLC) region during summer. When model simulations do not include macrozooplankton grazing explicitly, they systematically overestimate Southern Ocean chlorophyll biomass during the summer, even when there is no iron deposition from dust. When model simulations include a slow-growing macrozooplankton and trophic cascades among three zooplankton types, the high-chlorophyll summer bias in the Southern Ocean HNLC region largely disappears. Our model results suggest that the observed low phytoplankton biomass in the Southern Ocean during summer is primarily explained by the dynamics of the Southern Ocean zooplankton community, despite iron limitation of phytoplankton community growth rates. This result has implications for the representation of global biogeochemical cycles in models as zooplankton faecal pellets sink rapidly and partly control the carbon export to the intermediate and deep ocean.

  3. Contrasting biogeochemical cycles of cobalt in the surface western Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Dulaquais, Gabriel; Boye, Marie; Middag, Rob; Owens, Stephanis; Puigcorbe, Viena; Buesseler, Ken; Masqué, Pere; Baar, Hein J. W.; Carton, Xavier

    2014-12-01

    Dissolved cobalt (DCo; <0.2 µm 14 to 93 pM) and the apparent particulate cobalt (PCo; >0.2 µm <1 to 15 pM) were determined in the upper water column (<1000 m) of the western Atlantic Ocean along the GEOTRACES-A02 section (64°N to 50°S). The lowest DCo concentrations, typical of a nutrient-type distribution were observed in surface waters of the subtropical domains. Strong linear relationships between DCo and phosphate (P) as well as meridional gradients of decreasing DCo from high latitudes were characterized and both linked to the Co biological requirement. External sources such as the Amazon and the atmospheric deposition were found to contribute significantly (>10%) to the DCo stock of the mixed layer in the equatorial and north subtropical domains. Biotic and abiotic processes as well as the physical terms involved in the biogeochemical cycle of Co were defined and estimated. This allowed establishing the first global budget of DCo for the upper 100 m in the western Atlantic. The biological DCo uptake flux was the dominant sink along the section, as reflected by the overall nutrient-type behavior of DCo. The regeneration varied widely within the different biogeochemical domains, accounting for 10% of the DCo-uptake rate in the subarctic gyre and for up to 85% in southern subtropical domain. These findings demonstrated that the regeneration is likely the prevailing source of DCo in the surface waters of the western Atlantic, except in the subpolar domains where physically driven sources can sustain the DCo biological requirement.

  4. Sea Level Rise Modifies Biogeochemical Cycles in Winyah Bay, South Carolina Wetlands

    NASA Astrophysics Data System (ADS)

    Chow, A. T.; Conner, W.; Rhew, R. C.; Suhre, D.; Wang, J.

    2013-12-01

    Rising sea level along the relatively flat southeastern US coastal plain significantly changes both vegetation composition and salinity of coastal wetlands, eventually modifying ecosystem functions and biogeochemical processes of these wetlands. We conducted a two-year study to evaluate the dynamics and relationships among aboveground productivity, greenhouse and halocarbon gas emissions, nutrients, and dissolved organic matter of a freshwater forested wetland, a salt-impacted and degraded forested wetland, and a salt marsh in Winyah Bay, South Carolina, representing the salinity gradient and the transition from freshwater forested wetland to salt marsh due to sea level rise. The degraded forested wetland had significantly lower above-ground productivity with annual stem growth of 102 g/m^2/yr and litterfall of 392 g/m^2/yr compared to the freshwater forested wetland (230 and 612 g/m^2/yr, respectively). High methane emission [> 50 mmol/m2/day, n = 4] was only observed in the freshwater-forested wetland but there was a strong smell of sulfide noticed in the salt marsh, suggesting that different redox processes control the decomposition of natural organic matter along the salinity gradient. In addition, the largest CHCl3 [209 × 183 nmol/m2/day, n = 4] emission was observed in the degraded forested wetland, but net CH3Cl [257 × 190 nmol/m2/day, n = 4] and CH3Br [28 × 20 nmol/m2/day, n = 4] emissions were only observed in the salt marsh, suggesting different mechanisms in response to salt intrusion at that sites. The highest DOC concentration (28 - 42 mg/L) in monthly water samples was found in degraded forest wetland, followed by the freshwater forested wetland (19 - 38 mg/L) and salt marsh (9 - 18 mg/L). Results demonstrate that the salt-impacted degraded wetland has unique biogeochemical cycles that differ from unaltered freshwater forested wetland and salt marsh.

  5. Insights into biogeochemical cycling from a soil evolution model and long-term chronosequences

    NASA Astrophysics Data System (ADS)

    Johnson, M. O.; Gloor, M.; Kirkby, M. J.; Lloyd, J.

    2014-12-01

    Despite the importance of soil processes for global biogeochemical cycles, our capability for predicting soil evolution over geological timescales is poorly constrained. We attempt to probe our understanding and predictive capability of this evolutionary process by developing a mechanistic soil evolution model, based on an existing model framework, and comparing the predictions with observations from soil chronosequences in Hawaii. Our soil evolution model includes the major processes of pedogenesis: mineral weathering, percolation of rainfall, leaching of solutes, surface erosion, bioturbation, the effects of vegetation in terms of organic matter input and nutrient cycling and can be applied to various bedrock compositions and climates. The specific properties the model simulates over timescales of tens to hundreds of thousand years are, soil depth, vertical profiles of elemental composition, soil solution pH and organic carbon distribution. We demonstrate with this model the significant role that vegetation plays in accelerating the rate of weathering and hence soil profile development. Comparisons with soils that have developed on Hawaiian basalts reveal a remarkably good agreement with Na, Ca and Mg profiles suggesting that the model captures well the key components of soil formation. Nevertheless, differences between modelled and observed K and P are substantial. The fact that these are important plant nutrients suggests that a process likely missing from our model is the active role of vegetation in selectively acquiring nutrients. This study therefore indirectly indicates the valuable role that vegetation can play in accelerating the weathering and thus release of these globally important nutrients into the biosphere.

  6. How life affects the geochemical cycle of carbon

    NASA Technical Reports Server (NTRS)

    Walker, James C. G.

    1992-01-01

    Developing a quantitative understanding of the biogeochemical cycles of carbon as they have worked throughout Earth history on various time scales, how they have been affected by biological evolution, and how changes in the carbon content of ocean and atmosphere may have affected climate and the evolution of life are the goals of the research. Theoretical simulations were developed that can be tuned to reproduce such data as exist and, once tuned, can be used to predict properties that have not yet been observed. This is an ongoing process, in which models and results are refined as new data and interpretations become available and as understanding of the global system improves. Results of the research are described in several papers which were published or submitted for publication. These papers are summarized. Future research plans are presented.

  7. The Biogeochemical Role of Antarctic Krill and Baleen Whales in Southern Ocean Nutrient Cycling.

    NASA Astrophysics Data System (ADS)

    Ratnarajah, L.

    2015-12-01

    Iron limits primary productivity in large areas of the Southern Ocean. It has been suggested that baleen whales form a crucial part of biogeochemical cycling processes through the consumption of nutrient-rich krill and subsequent defecation, but evidence on their contribution is scarce. We analysed the concentration of iron in Antarctic krill and baleen whale faeces and muscle. Iron concentrations in Antarctic krill were over 1 million times higher, and whale faecal matter were almost 10 million times higher than typical Southern Ocean High Nutrient Low Chlorophyll seawater concentrations. This suggests that Antarctic krill act as a reservoir of in in Southern Ocean surface waters, and that baleen whales play an important role in converting this fixed iron into a liquid form in their faeces. We developed an exploratory model to examine potential contribution of blue, fin and humpback whales to the Southern Ocean iron cycle to explore the effect of the recovery of great whales to historical levels. Our results suggest that pre-exploitation populations of blue whales and, to a lesser extent fin and humpback whales, could have contributed to the more effective recycling of iron in surface waters, resulting in enhanced phytoplankton production. This enhanced primary productivity is estimated to be: 8.3 x 10-5 to 15 g C m-2 yr-1 (blue whales), 7 x 10-5 to 9 g C m-2 yr-1 (fin whales), and 10-5 to 1.7 g C m-2 yr-1 (humpback whales). To put these into perspective, current estimates of primary production in the Southern Ocean from remotely sensed ocean colour are in the order of 57 g C m-2 yr-1 (south of 50°). The high degree of uncertainty around the magnitude of these increases in primary productivity is mainly due to our limited quantitative understanding of key biogeochemical processes including iron content in krill, krill consumption rates by whales, persistence of iron in the photic zone, bioavailability of retained iron, and carbon-to-iron ratio of phytoplankton

  8. Rise of oxygen induced by Paleoproterozoic snowball glaciation: Insights from biogeochemical cycle modeling

    NASA Astrophysics Data System (ADS)

    Harada, M.; Tajika, E.; Sekine, Y.; Ozaki, K.

    2012-12-01

    Earth's atmosphere is considered to have been oxidized in early Paleoproterozoic ˜2.45-2.22 billion years ago. Geological and geochemical studies suggest that the oxidation occurred immediately after the Paleoproterozoic snowball glaciation based on the global appearance of proxy indicators for high levels of atmospheric oxygen preserved in sediments deposited after the glaciation. Accordingly, it has been speculated that the global warming in the glacial aftermath would have enhanced nutrient supply to the ocean via chemical weathering, which leads to a cyanobacterial bloom. Although this proposed scenario is qualitatively convincing, there have been no study to assess the scenario quantitatively. Here we developed an atmosphere-ocean biogeochemical cycle model and assessed the perturbation caused by the Paleoproterozoic snowball glaciation, in the aim of estimating the impact of such a large-scale glaciation on the redox state of earth's surface. Biogeochemical cycle model experiments demonstrate that high atmospheric CO2 levels and consequent high surface temperature (˜ 0.7 atm and 320 K, respectively) in the glacial aftermath enhanced the global weathering rate on the order of 10 times higher than that of today. Assuming the continental nutrient flux to the ocean is proportional to the global weathering rate, the global biological productivity increases by an order of magnitude compared to the present level. We found that the atmospheric oxygen level rises to 0.01 PAL (present atmospheric level) rapidly after the glaciation (e.g., within 103 years), then reaches ˜1 PAL owing to high levels of biological productivity sustained by greenhouse conditions. Eventually, the oxygen level decreases to a stable level around 0.01 PAL. We also found that calcite precipitation is prevented in the ocean during the first 105 years after the glaciation. Carbonate minerals precipitated from seawater may record carbon isotope ratio of 2-8‰ by the long-lasting, high levels

  9. The effect of gold mining and processing on biogeochemical cycles in Muteh area, Isfahan province, Iran

    NASA Astrophysics Data System (ADS)

    Keshavarzi, B.; Moore, F.

    2009-04-01

    The environmental impacts of gold mining and processing on geochemical and biogeochemical cycles in Muteh region located northwest of Esfahan province and northeast of Golpaygan city is investigated. For this purpose systematic sampling was carried out in, rock, soil, water, and sediment environments along with plant, livestocks and human hair samples. Mineralogical and Petrological studies show that ore mineral such as pyrite and arsenopyrite along with fluorine-bearing minerals like tremolite, actinolite, biotite and muscovite occur in green schist, amphibolite and lucogranitic rocks in the area. The hydrochemistry of the analysed water samples indicate that As and F display the highest concentrations among the analysed elements. Indeed arsenic has the highest concentration in both topsoil and subsoil samples when compared with other potentially toxic elements. Anthropogenic activity also have it s greatest effect on increasing arsenic concentration among the analysed samples. The concentration of the majority of the analysed elements in the shoots and leaves of two local plants of the region i.e Artemesia and Penagum is higher than their concentration in the roots. Generally speaking, Artemesia has a greater tendency for bioaccumulating heavy metals. The results of cyanide analysis in soil samples show that cyanide concentration in the soils near the newly built tailing dam is much higher than that in the vicinity of the old tailing dam. The high concentration of fluorine in the drinking water of the Muteh village is the main reason of the observed dental fluorosis symptoms seen in the inhabitants. One of the two drinking water wells which is located near the metamorphic complex and supplies part of the tap water in the village, probably has the greatest impact in this regard. A decreasing trend in fluorine concentration is illustrated with increasing distance from the metamorphic complex. Measurements of As concentration in human hair specimens indicate that As

  10. Using the Deepwater Horizon Disaster to Investigate Natural Biogeochemical Cycling Associated with Rapid Methane Emissions (Invited)

    NASA Astrophysics Data System (ADS)

    Kessler, J. D.; Valentine, D. L.; Yvon-Lewis, S. A.; Heintz, M. B.; Hu, L.; Garcia Tigreros, F.; Du, M.; Chan, E. W.

    2010-12-01

    On April 20, a violent methane discharge severed the Deepwater Horizon rig from its well and oil and gas began spilling into the deep Gulf of Mexico at depths of ca. 1.5 km simulating a natural, rapid, and short-term methane release in deepwater. Given the estimated rates of emission of total material as well as the fraction methane by weight, one can estimate that a total of 0.1 to 0.3 Tg (10^12 g) of methane were emitted from a localized area in only 83 days. Measurements of methane oxidation and sea-air methane flux were measured in June indicating that at that time, oxidation rates were slow and sea-air fluxes were relatively insignificant. A deepwater methane plume was identified and in June 2010, the depth of the methane plume was on average from 950 - 1150 m with the maximum methane concentration measured being 183 μM. Analyses of diffusion, advective mixing, and methane oxidation were used to estimate that this plume has a lifetime of years to decades with the main controlling factor being the rate of methane oxidation. The persistent nature of this deepwater methane plume allows it to be used as a natural laboratory to investigate key hypotheses concerning the biogeochemical cycling of methane and oxygen associated with rapid, short-term methane discharges.

  11. Insights into biogeochemical cycling from soil evolution model and long-term chronosequences

    NASA Astrophysics Data System (ADS)

    Johnson, M. O.; Gloor, M.; Kirkby, M. J.; Lloyd, J.

    2014-04-01

    Despite the importance of soil processes for global biogeochemical cycles, our capability for predicting soil evolution over geological timescales is poorly constrained. We attempt to probe our understanding and predictive capability of this evolutionary process by developing a mechanistic soil evolution model, based on an existing model framework, and comparing the predictions with observations from soil chronosequences in Hawaii. Our soil evolution model includes the major processes of pedogenesis: mineral weathering, percolation of rainfall, leaching of solutes, surface erosion, bioturbation and vegetation interactions and can be applied to various bedrock compositions and climates. The specific properties the model simulates over timescales of tens to hundreds of thousand years are, soil depth, vertical profiles of elemental composition, soil solution pH and organic carbon distribution. We demonstrate with this model the significant role that vegetation plays in accelerating the rate of weathering and hence soil profile development. Comparisons with soils that have developed on Hawaiian basalts reveal a remarkably good agreement with Na, Ca and Mg profiles suggesting that the model captures well the key components of soil formation. Nevertheless, differences between modelled and observed K and P are substantial. The fact that these are important plant nutrients suggests that a process likely missing from our model is the active role of vegetation in selectively acquiring nutrients. This study therefore indirectly indicates the valuable role that vegetation can play in accelerating the weathering and thus release of these globally important nutrients into the biosphere.

  12. Did large animals play an important role in global biogeochemical cycling in the past?

    NASA Astrophysics Data System (ADS)

    Doughty, C.

    2014-12-01

    In the late Pleistocene (~50-10,000 years ago), ninety-seven genera of large animals (>44kg) (megafauna) went extinct, concentrated in the Americas and Australia. The loss of megafauna had major effects on ecosystem structure, seed dispersal and land surface albedo. However, the impact of this dramatic extinction on ecosystem nutrient biogeochemistry, through the lateral transport of dung and bodies, has never been explored. Here we explore these nutrient impacts using a novel mathematical framework that analyses this lateral transport as a diffusion-like process and demonstrates that large animals play a disproportionately large role in the horizontal transfer of nutrients across landscapes. For example, we estimate that the extinction of the Amazonian megafauna led to a >98% reduction in the lateral transfer flux of the limiting nutrient phosphorus (P) with similar, though less extreme, decreases in all continents outside of Africa. This resulted in strong decreases in phosphorus availability in Eastern Amazonia away from fertile floodplains, a decline which may still be ongoing, and current P limitation in the Amazon basin may be partially a relic of an ecosystem without the functional connectedness it once had. More broadly, the Pleistocene megafaunal extinctions resulted in major and ongoing disruptions to terrestrial biogeochemical cycling at continental scales and increased nutrient heterogeneity globally.

  13. Parallel geochemical and metagenomic datasets reveal biogeochemical cycling in a hot spring ecosystem

    NASA Astrophysics Data System (ADS)

    Meyer-Dombard, D. R.; Swingley, W.; Raymond, J.; Shock, E.

    2012-12-01

    Environmental sequence data (2,321 16S rRNA clones and 470 megabases of "metagenome" sequence) were produced from biofilms at five sites in the outflow of "Bison Pool" (BP), an alkaline hot spring in the Lower Geyser Basin of Yellowstone National Park. The outflow of BP is characterized by decreasing temperature, increasing pH, increasing dissolved oxygen, decreasing total sulfide, and changing availability of biological nutrients. Microbial life along a 22 m gradient at BP transitions from a 92°C chemotrophic streamer biofilm community in the source pool to a 56°C phototrophic mat community. Coordinated analysis of the BP Environmental Genome and a complementary contextual geochemical dataset of ~75 parameters has revealed biogeochemical cycling and metabolic and microbial community shifts within a hot spring ecosystem (1). In the BP outflow, genes diagnostic for sulfide oxidation, attributed to Aquificales in the chemosynthetic zone and Deinococcus-Thermus at the photosynthetic fringe, decrease in total number downstream. Geochemical data indicate that biological sulfide oxidation, an energy-yielding process in BP, occurs over this same range. While the genetic capacity for sulfate reduction in Thermoproteales at high temperature was found, inorganic sulfate reduction is only minimally energy-yielding at BP suggesting limited activity of these genes. Presence of apr, sat, and dsr genes in the photosynthetic mats may indicate sulfate reduction in micro-niches at depth within the biofilms, perhaps in response to increased availability of organic solutes. Carbon fixation tactics shift downstream in BP as well, as evidenced by the presence of genes associated with specific pathways and carbon isotope ratios. Capacity for the rTCA cycle, attributed to Aquificales and Thermoproteales, and the acetyl co-A pathway are found throughout BP, but are most prevalent in highest temperature sites. At lower temperature sites, fewer total carbon fixation genes were observed

  14. Archaea in metazoan diets: implications for food webs and biogeochemical cycling.

    PubMed

    Thurber, Andrew R; Levin, Lisa A; Orphan, Victoria J; Marlow, Jeffrey J

    2012-08-01

    Although the importance of trophic linkages, including 'top-down forcing', on energy flow and ecosystem productivity is recognized, the influence of metazoan grazing on Archaea and the biogeochemical processes that they mediate is unknown. Here, we test if: (1) Archaea provide a food source sufficient to allow metazoan fauna to complete their life cycle; (2) neutral lipid biomarkers (including crocetane) can be used to identify Archaea consumers; and (3) archaeal aggregates are a dietary source for methane seep metazoans. In the laboratory, we demonstrated that a dorvilleid polychaete, Ophryotrocha labronica, can complete its life cycle on two strains of Euryarchaeota with the same growth rate as when fed bacterial and eukaryotic food. Archaea were therefore confirmed as a digestible and nutritious food source sufficient to sustain metazoan populations. Both strains of Euryarchaeota used as food sources had unique lipids that were not incorporated into O. labronica tissues. At methane seeps, sulfate-reducing bacteria that form aggregations and live syntrophically with anaerobic-methane oxidizing Archaea contain isotopically and structurally unique fatty acids (FAs). These biomarkers were incorporated into tissues of an endolithofaunal dorvilleid polychaete species from Costa Rica (mean bulk δ(13)C=-92±4‰; polar lipids -116‰) documenting consumption of archaeal-bacterial aggregates. FA composition of additional soft-sediment methane seep species from Oregon and California provided evidence that consumption of archaeal-bacterial aggregates is widespread at methane seeps. This work is the first to show that Archaea are consumed by heterotrophic metazoans, a trophic process we coin as 'archivory'. PMID:22402398

  15. Archaea in metazoan diets: implications for food webs and biogeochemical cycling

    PubMed Central

    Thurber, Andrew R; Levin, Lisa A; Orphan, Victoria J; Marlow, Jeffrey J

    2012-01-01

    Although the importance of trophic linkages, including ‘top-down forcing', on energy flow and ecosystem productivity is recognized, the influence of metazoan grazing on Archaea and the biogeochemical processes that they mediate is unknown. Here, we test if: (1) Archaea provide a food source sufficient to allow metazoan fauna to complete their life cycle; (2) neutral lipid biomarkers (including crocetane) can be used to identify Archaea consumers; and (3) archaeal aggregates are a dietary source for methane seep metazoans. In the laboratory, we demonstrated that a dorvilleid polychaete, Ophryotrocha labronica, can complete its life cycle on two strains of Euryarchaeota with the same growth rate as when fed bacterial and eukaryotic food. Archaea were therefore confirmed as a digestible and nutritious food source sufficient to sustain metazoan populations. Both strains of Euryarchaeota used as food sources had unique lipids that were not incorporated into O. labronica tissues. At methane seeps, sulfate-reducing bacteria that form aggregations and live syntrophically with anaerobic-methane oxidizing Archaea contain isotopically and structurally unique fatty acids (FAs). These biomarkers were incorporated into tissues of an endolithofaunal dorvilleid polychaete species from Costa Rica (mean bulk δ13C=−92±4‰ polar lipids −116‰) documenting consumption of archaeal-bacterial aggregates. FA composition of additional soft-sediment methane seep species from Oregon and California provided evidence that consumption of archaeal-bacterial aggregates is widespread at methane seeps. This work is the first to show that Archaea are consumed by heterotrophic metazoans, a trophic process we coin as ‘archivory'. PMID:22402398

  16. Bark Beetle-Induced Mortality Impacts on Forest Biogeochemical Cycles are Less than Expected

    NASA Astrophysics Data System (ADS)

    Ewers, B. E.; Pendall, E.; Norton, U.; Millar, D.; Mackay, D. S.; Frank, J. M.; Massman, W. J.; Hyde, K.

    2015-12-01

    Bark beetles increased conifer tree mortality across western North America due to past land use interacting with climate change. For both mountain pine and spruce beetles, the mechanism of mortality is hydraulic failure due to xylem occlusion by beetle-carried blue stain fungi, which causes the trees to die from symptoms that are the same as extreme drought. As the mortality event peaked in the last decade, the hypothesized effects on forest biogeochemical processes were 1) lower forest water use from xylem occlusion, 2) less carbon uptake from limited canopy gas exchange, 3) increased nitrogen cycling from increased litterfall and soil moisture and 4) increased streamflow and organic N and C loading at the watershed scale from the first three consequences. The stand-scale effects during mortality were as predicted with transpiration falling by 10-35% in proportion to the occluded xylem, carbon uptake declining by > 50% due to lack of canopy gas exchange and nitrogen cycling increasing from elevated litter inputs and stimulated organic matter decomposition. Some stands, especially mid-elevation lodgepole pine, did not follow these trends because of residual vegetation taking advantage of the increased resources from the dead trees and rapid succession within 5 years of new grasses, shrubs and tree seedlings as well as increased resource use by surviving canopy trees. In a high elevation spruce stand, the lower water use lasted for only three years while summer carbon uptake was only significantly reduced for a year. At the scale of small to medium-sized watersheds, the impact of mortality was not detectable in stream flow due to the spatial and temporal scale muting of the mortality signal as temporal and spatial scales increase. Current ecosystem and watershed models miss these compensating mechanisms with increasing scale and thus over predict the impact of bark beetle mortality.

  17. Genomic reconstruction of novel sediment phyla enlightens roles in sedimentary biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Baker, B.; Lazar, C.; Seitz, K.; Teske, A.; Hinrichs, K. U.; Dick, G.

    2015-12-01

    Estuaries are among the most productive habitats on the planet. Microbes in estuary sediments control the turnover of organic carbon, and the anaerobic cycling of nitrogen and sulfur. These communities are complex and primarily made up of uncultured lineages, thus little is known about how ecological and metabolic processes are partitioned in sediments. We reconstructed 82 bacterial and 24 archaeal high-quality genomes from different redox regimes (sulfate-rich, sulfate-methane transition zone, and methane-rich zones) of estuary sediments. These bacteria belong to 23 distinct groups, including uncultured candidate phyla (eg. KSB1, TA06, and KD3-62), and three newly described phyla (WOR-1, and -2, and -3). The archaea encompass 8 widespread sediment lineages including MGB-D, RC-III and IV, Z7ME43, Parvarchaeota, Lokiarchoaeta (MBG-B), SAGMEG, Bathyarchaeota (groups MCG-1, -6, -7, and -15) and previously unrecognized deeply branched phylum "Thorarchaeota". The uncultured phyla mediate essential biogeochemical processes of the estuarine environment. Z7ME43 archaea have genes for S disproportionation (S0 reduction and thiosulfate reduction and oxidation). SAGMEG appear to be strict anaerobes capable of coupling CO/H2 oxidation to either S0 or nitrite reduction and have novel RubisCO genes for carbon fixation. Thorarchaeota contain pathways for acetate production from the degradation of detrital proteins and intermediate S cycling. Furthermore, the gene content of this group revealed links in the evolutionary histories of archaea and eukaryotes. This dataset extents our knowledge of the metabolic potential of several uncultured phyla. We were able to chart the flow of carbon and nutrients through the multiple layers of bacterial processing and reveal potential ecological interactions within the communities.

  18. Evidence of Microbial Regulation of Biogeochemical Cycles from a Study on Methane Flux and Land Use Change

    PubMed Central

    Nazaries, Loïc; Pan, Yao; Bodrossy, Levente; Baggs, Elizabeth M.; Millard, Peter; Murrell, J. Colin

    2013-01-01

    Microbes play an essential role in ecosystem functions, including carrying out biogeochemical cycles, but are currently considered a black box in predictive models and all global biodiversity debates. This is due to (i) perceived temporal and spatial variations in microbial communities and (ii) lack of ecological theory explaining how microbes regulate ecosystem functions. Providing evidence of the microbial regulation of biogeochemical cycles is key for predicting ecosystem functions, including greenhouse gas fluxes, under current and future climate scenarios. Using functional measures, stable-isotope probing, and molecular methods, we show that microbial (community diversity and function) response to land use change is stable over time. We investigated the change in net methane flux and associated microbial communities due to afforestation of bog, grassland, and moorland. Afforestation resulted in the stable and consistent enhancement in sink of atmospheric methane at all sites. This change in function was linked to a niche-specific separation of microbial communities (methanotrophs). The results suggest that ecological theories developed for macroecology may explain the microbial regulation of the methane cycle. Our findings provide support for the explicit consideration of microbial data in ecosystem/climate models to improve predictions of biogeochemical cycles. PMID:23624469

  19. Effects of stratospheric ozone depletion, solar UV radiation, and climate change on biogeochemical cycling: interactions and feedbacks.

    PubMed

    Erickson, David J; Sulzberger, Barbara; Zepp, Richard G; Austin, Amy T

    2015-01-01

    Climate change modulates the effects of solar UV radiation on biogeochemical cycles in terrestrial and aquatic ecosystems, particularly for carbon cycling, resulting in UV-mediated positive or negative feedbacks on climate. Possible positive feedbacks discussed in this assessment include: (i) enhanced UV-induced mineralisation of above ground litter due to aridification; (ii) enhanced UV-induced mineralisation of photoreactive dissolved organic matter (DOM) in aquatic ecosystems due to changes in continental runoff and ice melting; (iii) reduced efficiency of the biological pump due to UV-induced bleaching of coloured dissolved organic matter (CDOM) in stratified aquatic ecosystems, where CDOM protects phytoplankton from the damaging solar UV-B radiation. Mineralisation of organic matter results in the production and release of CO2, whereas the biological pump is the main biological process for CO2 removal by aquatic ecosystems. This paper also assesses the interactive effects of solar UV radiation and climate change on the biogeochemical cycling of aerosols and trace gases other than CO2, as well as of chemical and biological contaminants. Interacting effects of solar UV radiation and climate change on biogeochemical cycles are particularly pronounced at terrestrial-aquatic interfaces. PMID:25380348

  20. Effects of stratospheric ozone depletion, solar UV radiation, and climate change on biogeochemical cycling: interactions and feedbacks

    SciTech Connect

    Erickson III, David J.; Sulzberger, Barbara; Zepp, Richard G.; Austin, Amy T.

    2014-11-07

    Climate change modulates the effects of solar UV radiation on biogeochemical cycles in terrestrial and aquatic ecosystems, particularly for carbon cycling, resulting in UV-mediated positive or negative feedbacks on climate. Possible positive feedbacks discussed in this assessment include: (i) enhanced UV-induced mineralisation of above ground litter due to aridification; (ii) enhanced UV-induced mineralisation of photoreactive dissolved organic matter (DOM) in aquatic ecosystems due to changes in continental runoff and ice melting; (iii) reduced efficiency of the biological pump due to UV-induced bleaching of coloured dissolved organic matter (CDOM) in stratified aquatic ecosystems, where CDOM protects phytoplankton from the damaging solar UV-B radiation. Mineralisation of organic matter results in the production and release of CO2, whereas the biological pump is the main biological process for CO2 removal by aquatic ecosystems. This research also assesses the interactive effects of solar UV radiation and climate change on the biogeochemical cycling of aerosols and trace gases other than CO2, as well as of chemical and biological contaminants. Lastly,, interacting effects of solar UV radiation and climate change on biogeochemical cycles are particularly pronounced at terrestrial-aquatic interfaces.

  1. Effects of stratospheric ozone depletion, solar UV radiation, and climate change on biogeochemical cycling: interactions and feedbacks

    DOE PAGES

    Erickson III, David J.; Sulzberger, Barbara; Zepp, Richard G.; Austin, Amy T.

    2014-11-07

    Climate change modulates the effects of solar UV radiation on biogeochemical cycles in terrestrial and aquatic ecosystems, particularly for carbon cycling, resulting in UV-mediated positive or negative feedbacks on climate. Possible positive feedbacks discussed in this assessment include: (i) enhanced UV-induced mineralisation of above ground litter due to aridification; (ii) enhanced UV-induced mineralisation of photoreactive dissolved organic matter (DOM) in aquatic ecosystems due to changes in continental runoff and ice melting; (iii) reduced efficiency of the biological pump due to UV-induced bleaching of coloured dissolved organic matter (CDOM) in stratified aquatic ecosystems, where CDOM protects phytoplankton from the damaging solarmore » UV-B radiation. Mineralisation of organic matter results in the production and release of CO2, whereas the biological pump is the main biological process for CO2 removal by aquatic ecosystems. This research also assesses the interactive effects of solar UV radiation and climate change on the biogeochemical cycling of aerosols and trace gases other than CO2, as well as of chemical and biological contaminants. Lastly,, interacting effects of solar UV radiation and climate change on biogeochemical cycles are particularly pronounced at terrestrial-aquatic interfaces.« less

  2. Evidence of microbial regulation of biogeochemical cycles from a study on methane flux and land use change.

    PubMed

    Nazaries, Loïc; Pan, Yao; Bodrossy, Levente; Baggs, Elizabeth M; Millard, Peter; Murrell, J Colin; Singh, Brajesh K

    2013-07-01

    Microbes play an essential role in ecosystem functions, including carrying out biogeochemical cycles, but are currently considered a black box in predictive models and all global biodiversity debates. This is due to (i) perceived temporal and spatial variations in microbial communities and (ii) lack of ecological theory explaining how microbes regulate ecosystem functions. Providing evidence of the microbial regulation of biogeochemical cycles is key for predicting ecosystem functions, including greenhouse gas fluxes, under current and future climate scenarios. Using functional measures, stable-isotope probing, and molecular methods, we show that microbial (community diversity and function) response to land use change is stable over time. We investigated the change in net methane flux and associated microbial communities due to afforestation of bog, grassland, and moorland. Afforestation resulted in the stable and consistent enhancement in sink of atmospheric methane at all sites. This change in function was linked to a niche-specific separation of microbial communities (methanotrophs). The results suggest that ecological theories developed for macroecology may explain the microbial regulation of the methane cycle. Our findings provide support for the explicit consideration of microbial data in ecosystem/climate models to improve predictions of biogeochemical cycles.

  3. Effects of stratospheric ozone depletion, solar UV radiation, and climate change on biogeochemical cycling: interactions and feedbacks.

    PubMed

    Erickson, David J; Sulzberger, Barbara; Zepp, Richard G; Austin, Amy T

    2015-01-01

    Climate change modulates the effects of solar UV radiation on biogeochemical cycles in terrestrial and aquatic ecosystems, particularly for carbon cycling, resulting in UV-mediated positive or negative feedbacks on climate. Possible positive feedbacks discussed in this assessment include: (i) enhanced UV-induced mineralisation of above ground litter due to aridification; (ii) enhanced UV-induced mineralisation of photoreactive dissolved organic matter (DOM) in aquatic ecosystems due to changes in continental runoff and ice melting; (iii) reduced efficiency of the biological pump due to UV-induced bleaching of coloured dissolved organic matter (CDOM) in stratified aquatic ecosystems, where CDOM protects phytoplankton from the damaging solar UV-B radiation. Mineralisation of organic matter results in the production and release of CO2, whereas the biological pump is the main biological process for CO2 removal by aquatic ecosystems. This paper also assesses the interactive effects of solar UV radiation and climate change on the biogeochemical cycling of aerosols and trace gases other than CO2, as well as of chemical and biological contaminants. Interacting effects of solar UV radiation and climate change on biogeochemical cycles are particularly pronounced at terrestrial-aquatic interfaces.

  4. A knowledge-based reactive-transport approach for the modeling of biogeochemical cycles at the continent-ocean interface

    NASA Astrophysics Data System (ADS)

    Regnier, P.; Aguilera, D.; Jourabchi, P.; Meile, C.; van Cappellen, P.; Vanderborght, J.-P.

    2003-04-01

    Reactive-transport models (RTMs) are traditionally developed and used to investigate the fate and transport of a selected set of chemical constituents within a given compartment of the earth, mainly at the local or subregional scale. As a result, existing RTMs tend to be environment and application specific. For instance, at the continent-ocean interface, RTMs have been used to simulate, among others, biogeochemical dynamics in rivers, estuaries, coastal areas, aquifers, and sediments. The development of upscaling protocols, where RTMs of interconnected environments are progressively aggregated into larger system units is critical for merging marine and continental approaches to biogeochemical cycles. However, one of the major challenges to achieve this goal is in the realistic and consistent representation of highly complex reaction networks that characterize the chemical dynamics of the natural environments present along the continent-ocean continuum (rivers, estuaries, coastal areas, sediments). The expanding knowledge about (bio)geochemical transformation processes achieved via field- and laboratory-based experiments needs also to be made available and integrated consistently (i.e. with comparable level of complexities) across traditional disciplinary barriers, by utilizing the unifying conceptual and mathematical principles underlying all RTMs. Our modeling approach, based on a modular concept, offers the necessary flexibility for the implementation of new theoretical and experimental information on the rates and pathways of biogeochemical reactions. A key component of our reaction network simulator is the "Knowledge Base", which acts as a single evolving repository of up-to-date information on biogeochemical processes. The development of self-consistent, "Knowledge-Based" biogeochemical reaction network modules, which can be merged with existing transport models of the various compartments of the hydrosphere along the continent-ocean continuum, creates a

  5. Evaluation of biogeochemical cycles in an ensemble of three state-of-the-art numerical models of the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Eilola, K.; Gustafsson, B. G.; Kuznetsov, I.; Meier, H. E. M.; Neumann, T.; Savchuk, O. P.

    2011-11-01

    Three state-of-the-art coupled physical-biogeochemical models, the BAltic sea Long-Term large-Scale Eutrophication Model (BALTSEM), the Ecological Regional Ocean Model (ERGOM), and the Swedish Coastal and Ocean Biogeochemical model coupled to the Rossby Centre Ocean circulation model (RCO-SCOBI), are used to calculate changing nutrient and oxygen dynamics in the Baltic Sea. The models are different in that ERGOM and RCO-SCOBI are three-dimensional (3D) circulation models while BALTSEM resolves the Baltic Sea into 13 dynamically interconnected and horizontally integrated sub-basins. The aim is to assess the simulated long-term dynamics and to discuss the response of the coupled physical-biogeochemical models to changing physical conditions and nutrient loadings during the period 1970-2005. We compared the long-term seasonal and annual statistics of inorganic nitrogen, phosphorus, and oxygen from hindcast simulations with those estimated from observations. We also studied the extension of hypoxic bottom areas covered by waters with O 2 < 2 ml O 2 l - 1 and cod reproductive volumes comprising waters with salinity > 11 and O 2 > 2 ml O 2 l - 1 . The models reproduce much of the nutrient biogeochemical cycling in the Baltic proper. However, biases are larger in the Bothnian Sea and Bothnian Bay. No model shows outstanding performance in all aspects but instead the ensemble mean results are better than or as good as the results of any of the individual models. Uncertainties are primarily related to differences in the bioavailable fractions of nutrient loadings from land and parameterizations of key processes like sediment fluxes that are presently not well known. Also the uncertainty related to the initialization of the models in the early 1960s influence the modeled biogeochemical cycles during the investigated period.

  6. Organics in the atmosphere: From air pollution to biogeochemical cycles and climate (Vilhelm Bjerknes Medal)

    NASA Astrophysics Data System (ADS)

    Kanakidou, Maria

    2016-04-01

    Organics are key players in the biosphere-atmosphere-climate interactions. They have also a significant anthropogenic component due to primary emissions or interactions with pollution. The organic pool in the atmosphere is a complex mixture of compounds of variable reactivity and properties, variable content in C, H, O, N and other elements depending on their origin and their history in the atmosphere. Multiphase atmospheric chemistry is known to produce organic acids with high oxygen content, like oxalic acid. This water soluble organic bi-acid is used as indicator for cloud processing and can form complexes with atmospheric Iron, affecting Iron solubility. Organics are also carriers of other nutrients like nitrogen and phosphorus. They also interact with solar radiation and with atmospheric water impacting on climate. In line with this vision for the role of organics in the atmosphere, we present results from a global 3-dimensional chemistry-transport model on the role of gaseous and particulate organics in atmospheric chemistry, accounting for multiphase chemistry and aerosol ageing in the atmosphere as well as nutrients emissions, atmospheric transport and deposition. Historical simulations and projections highlight the human impact on air quality and atmospheric deposition to the oceans. The results are put in the context of climate change. Uncertainties and implications of our findings for biogeochemical and climate modeling are discussed.

  7. Effects of Past Climate Changes on Ecosystem Biogeochemical Cycles in Rocky Mountain Forests and Lakes

    NASA Astrophysics Data System (ADS)

    Shuman, B.; Mechenich, M. F.; Stefanova, I.; Henderson, A.; Donnelly, J. P.

    2007-12-01

    Ongoing climate trends will likely alter how forest ecosystems produce important goods and services, in part, by changing ecosystem responses to disturbances, such as fires and land-use. Disturbances induce forest succession and thus dramatically change the flow of water and nutrients through a given ecosystem. However, long-term ecosystem responses to disturbance, especially regarding nutrient pools and cycling rates, are poorly documented, and less is known about the effects of century-scale climate trends on these responses especially with respect to moisture. Here, we show biogeochemical responses to repeated (>20) episodes of disturbance and succession in a single ecosystem under a range of climatic conditions over 2000 years. Our lake sediment record shows regular fluctuations in the flux of base cations and other macronutrients from lodgepole pine ( Pinus contorta) forests in northern Colorado following catastrophic stand-replacing fires. Post-fire elemental fluctuations are consistent with ecosystem theory regarding the re-equilibration of biomass and nutrient pools during succession, but show systematic variation that has been previously undocumented. The time span of post-fire re-equilibration correlates positively with measures of fire severity, which is consistent with hypotheses that seed dispersal and soil recovery likely slow re-growth after large or severe fires. Likewise, dry conditions during the Medieval Climatic Anomaly (MCA, 1200-500 yrs BP) altered elemental fluctuations and, thus, generated post-fire pulses of lake eutrophication that were not evident during other periods. The interaction of climate and disturbance, therefore, has important consequences for ecosystem function and services, including the quality of aquatic environments.

  8. Natural Organobromine in Marine Sediments: New Evidence of Biogeochemical Br Cycling

    SciTech Connect

    A Leri; J Hakala; M Marcus; A Lanzirotti; C Reddy; S Myneni

    2011-12-31

    Organobromine (Br{sub org}) compounds, commonly recognized as persistent, toxic anthropogenic pollutants, are also produced naturally in terrestrial and marine systems. Several enzymatic and abiotic bromination mechanisms have been identified, as well as an array of natural Br{sub org} molecules associated with various marine organisms. The fate of the carbon-bromine functionality in the marine environment, however, remains largely unexplored. Oceanographic studies have noted an association between bromine (Br) and organic carbon (C{sub org}) in marine sediments. Even so, there has been no direct chemical evidence that Br in the sediments exists in a stable form apart from inorganic bromide (Br{sub inorg}), which is widely presumed conservative in marine systems. To investigate the scope of natural Br{sub org} production and its fate in the environment, we probed Br distribution and speciation in estuarine and marine sediments using in situ X-ray spectroscopy and spectromicroscopy. We show that Br{sub org} is ubiquitous throughout diverse sedimentary environments, occurring in correlation with C{sub org} and metals such as Fe, Ca, and Zn. Analysis of sinking particulate carbon from the seawater column links the Br{sub org} observed in sediments to biologically produced Br{sub org} compounds that persist through humification of natural organic matter (NOM). Br speciation varies with sediment depth, revealing biogeochemical cycling of Br between organic and inorganic forms as part of the burial and degradation of NOM. These findings illuminate the chemistry behind the association of Br with Corg in marine sediments and cast doubt on the paradigmatic classification of Br as a conservative element in seawater systems.

  9. Nutrient biogeochemical cycles in the Gulf of Riga: scaling up field studies with a mathematical model

    NASA Astrophysics Data System (ADS)

    Savchuk, Oleg P.

    2002-05-01

    A box model has been implemented to understand the large-scale biogeochemical cycles of nitrogen, phosphorus, and silicon in the Gulf of Riga. The large data sets collected within the international Gulf of Riga Project in 1993/1995 were used to validate the model. The comparison to data was useful in scaling up to the gulf-wide level and scrutinizing the conclusions based on short-term field surveys and experimental studies. The simulations indicate that the limiting role was passing from silicon to phosphorus to nitrogen over the seasons of organic production. However, on an annual scale, nutrient limitation was close to the "Redfield equilibrium". Mass balance considerations, based on modeled coupled fluxes, disagree with the conclusions on low sediment denitrification and high phosphorus retention in the pelagic system, which were derived from isolated measurements. Nutrient budgets constructed with the model revealed the high buffer capacity of the Gulf of Riga. The nutrient residence times span a range from 6 years for N to 70 years for Si. The buffering arises from intensive internal recycling in the water body and by the bottom sediments. The budgets indicate that the Gulf retains about two-thirds of external nitrogen and silicon inputs, while phosphorus retention is only 10%. A slow response to external perturbations is demonstrated with numerical experiments run for 15 years under 50% reductions of terrestrial nutrient inputs. These experiments imply that the most effective is the N+P reduction scenario, which resulted in a 20% decrease of primary production after 12 years. A reduction of P resulted in only a 6% decrease of primary production; however, it yielded an 80% drop in the amount of nitrogen fixation.

  10. Metaproteomic survey of six aquatic habitats: discovering the identities of microbial populations active in biogeochemical cycling.

    PubMed

    Hanson, Buck T; Hewson, Ian; Madsen, Eugene L

    2014-04-01

    Our goal is to strengthen the foundations of metaproteomics as a microbial community analysis tool that links the functional identity of actively expressed gene products with host phylogeny. We used shotgun metaproteomics to survey waters in six disparate aquatic habitats (Cayuga Lake, NY; Oneida Lake, NY; Gulf of Maine; Chesapeake Bay, MD; Gulf of Mexico; and the South Pacific). Peptide pools prepared from filter-gathered microbial biomass, analyzed by nano-liquid chromatography-mass spectrometry (MS/MS) generating 9,693 ± 1,073 mass spectra identified 326 ± 107 bacterial proteins per sample. Distribution of proteobacterial (Alpha and Beta) and cyanobacterial (Prochlorococcus and Synechococcus spp.) protein hosts across all six samples was consistent with the previously published biogeography for these microorganisms. Marine samples were enriched in transport proteins (TRAP-type for dicarboxylates and ATP binding cassette (ABC)-type for amino acids and carbohydrates) compared with the freshwater samples. We were able to match in situ expression of many key proteins catalyzing C-, N-, and S-cycle processes with their bacterial hosts across all six habitats. Pelagibacter was identified as the host of ABC-type sugar-, organic polyanion-, and glycine betaine-transport proteins; this extends previously published studies of Pelagibacter's in situ biogeochemical role in marine C- and N-metabolism. Proteins matched to Ruegeria confirmed these organism's role in marine waters oxidizing both carbon monoxide and sulfide. By documenting both processes expressed in situ and the identity of host cells, metaproteomics tested several existing hypotheses about ecophysiological processes and provided fodder for new ones. PMID:24425229

  11. Biogeochemical cycling in the Bering Sea over the onset of major Northern Hemisphere Glaciation

    NASA Astrophysics Data System (ADS)

    Swann, George E. A.; Snelling, Andrea M.; Pike, Jennifer

    2016-09-01

    The Bering Sea is one of the most biologically productive regions in the marine system and plays a key role in regulating the flow of waters to the Arctic Ocean and into the subarctic North Pacific Ocean. Cores from Integrated Ocean Drilling Program (IODP) Expedition 323 to the Bering Sea provide the first opportunity to obtain reconstructions from the region that extend back to the Pliocene. Previous research at Bowers Ridge, south Bering Sea, has revealed stable levels of siliceous productivity over the onset of major Northern Hemisphere Glaciation (NHG) (circa 2.85-2.73 Ma). However, diatom silica isotope records of oxygen (δ18Odiatom) and silicon (δ30Sidiatom) presented here demonstrate that this interval was associated with a progressive increase in the supply of silicic acid to the region, superimposed on shift to a more dynamic environment characterized by colder temperatures and increased sea ice. This concluded at 2.58 Ma with a sharp increase in diatom productivity, further increases in photic zone nutrient availability and a permanent shift to colder sea surface conditions. These transitions are suggested to reflect a gradually more intense nutrient leakage from the subarctic northwest Pacific Ocean, with increases in productivity further aided by increased sea ice- and wind-driven mixing in the Bering Sea. In suggesting a linkage in biogeochemical cycling between the south Bering Sea and subarctic Northwest Pacific Ocean, mainly via the Kamchatka Strait, this work highlights the need to consider the interconnectivity of these two systems when future reconstructions are carried out in the region.

  12. How does global biogeochemical cycle become complicated by terrestrial-aquatic interactions ?

    NASA Astrophysics Data System (ADS)

    Nakayama, Tadanobu; Maksyutov, Shamil

    2015-04-01

    Inland water such as river and lake are now known to be important and active components of global carbon cycle though its contribution has remained uncertain due to data scarcity (Battin et al., 2009; Aufdenkampe et al., 2011). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local-global scales, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes. In this study, NICE was coupled with various biogeochemical models to incorporate biogeochemical cycle including reaction between inorganic and organic carbons (DOC, POC, DIC, pCO2, etc.) in terrestrial and aquatic ecosystems including surface water and groundwater. The coupled model simulated CO2 evasion from inland water in global scale, was relatively in good agreement in that estimated by empirical regression model (Raymond et al., 2013). In particular, the simulated result implied importance of connectivity between terrestrial and aquatic ecosystems in addition to surface and groundwater, and hillslopes and stream channels, etc. The model further improved the accuracy of CH4 flux in wetland which is sensitive to fluctuations of shallow groundwater because the original NICE incorporates 3-D groundwater sub-model and simulates lateral subsurface flow more reasonably. This simulation system would play important role in integration of greenhouse gas budget of the biosphere, quantification of hot spots in boundless biogeochemical cycle, and bridging gap between top-down and bottom-up approaches (Cole et al., 2007; Frei et al., 2012; Kiel and Cardenas, 2014). References; Aufdenkampe, A.K., et al

  13. Iron: A Biogeochemical Engine That Drives Carbon, Nitrogen, and Phosphorus Cycling in Humid Tropical Forest Soils

    NASA Astrophysics Data System (ADS)

    Silver, W. L.; Hall, S. J.; Thompson, A.; Yang, W. H.

    2014-12-01

    rapidly immobilized into biological pools (Liptzin and Silver 2009). Data suggest that Fe-redox cycling may decrease P limitation to NPP, and help maintain forest nutrient stocks. In summary, our results highlight the biogeochemical significance of Fe cycling in upland soils environments and its important role in the dynamics of humid tropical forests.

  14. Hydrothermal contributions to global biogeochemical cycles: Insights from the Macquarie Island ophiolite

    NASA Astrophysics Data System (ADS)

    Coggon, Rosalind M.; Teagle, Damon A. H.; Harris, Michelle; Davidson, Garry J.; Alt, Jeffrey C.; Brewer, Timothy S.

    2016-11-01

    Hydrothermal circulation is a fundamental process in the formation and aging of the ocean crust, with the resultant chemical exchange between the crust and oceans comprising a key component of global biogeochemical cycles. Sections of hydrothermally altered ocean crust provide time-integrated records of this chemical exchange. Unfortunately, our knowledge of the nature and extent of hydrothermal exchange is limited by the absence of complete oceanic crustal sections from either submarine exposures or drill core. Sub-Antarctic Macquarie Island comprises ~ 10 Ma ocean crust formed at a slow spreading ridge, and is the only sub-aerial exposure of a complete section of ocean crust in the ocean basin in which it formed. Hydrothermally altered rocks from Macquarie Island therefore provide a unique opportunity to evaluate the chemical changes due to fluid-rock exchange through a complete section of ocean crust. Here we exploit the immobile behavior of some elements during hydrothermal alteration to determine the precursor compositions to altered Macquarie whole rock samples, and evaluate the changes in bulk rock chemistry due to fluid-rock interaction throughout the Macquarie crust. The extent to which elements are enriched or depleted in each sample depends upon the secondary mineral assemblage developed, and hence the modal abundances of the primary minerals in the rocks and the alteration conditions, such as temperature, fluid composition, and water:rock ratios. Consequently the chemical changes vary with depth, most notably within the lava-dike transition zone where enrichments in K, S, Rb, Ba, and Zn are observed. Our results indicate that hydrothermal alteration of the Macquarie crust resulted in a net flux of Si, Ti, Al, and Ca to the oceans, whereas the crust was a net sink for H2O, Mg, Na, K, and S. Our results also demonstrate the importance of including the contribution of elemental uptake by veins for some elements (e.g., Si, Fe, Mg, S). Extrapolation of our

  15. Timing of the departure of ocean biogeochemical cycles from the preindustrial state.

    PubMed

    Christian, James R

    2014-01-01

    Changes in ocean chemistry and climate induced by anthropogenic CO2 affect a broad range of ocean biological and biogeochemical processes; these changes are already well underway. Direct effects of CO2 (e.g. on pH) are prominent among these, but climate model simulations with historical greenhouse gas forcing suggest that physical and biological processes only indirectly forced by CO2 (via the effect of atmospheric CO2 on climate) begin to show anthropogenically-induced trends as early as the 1920s. Dates of emergence of a number of representative ocean fields from the envelope of natural variability are calculated for global means and for spatial 'fingerprints' over a number of geographic regions. Emergence dates are consistent among these methods and insensitive to the exact choice of regions, but are generally earlier with more spatial information included. Emergence dates calculated for individual sampling stations are more variable and generally later, but means across stations are generally consistent with global emergence dates. The last sign reversal of linear trends calculated for periods of 20 or 30 years also functions as a diagnostic of emergence, and is generally consistent with other measures. The last sign reversal among 20 year trends is found to be a conservative measure (biased towards later emergence), while for 30 year trends it is found to have an early emergence bias, relative to emergence dates calculated by departure from the preindustrial mean. These results are largely independent of emission scenario, but the latest-emerging fields show a response to mitigation. A significant anthropogenic component of ocean variability has been present throughout the modern era of ocean observation. PMID:25386910

  16. Timing of the departure of ocean biogeochemical cycles from the preindustrial state.

    PubMed

    Christian, James R

    2014-01-01

    Changes in ocean chemistry and climate induced by anthropogenic CO2 affect a broad range of ocean biological and biogeochemical processes; these changes are already well underway. Direct effects of CO2 (e.g. on pH) are prominent among these, but climate model simulations with historical greenhouse gas forcing suggest that physical and biological processes only indirectly forced by CO2 (via the effect of atmospheric CO2 on climate) begin to show anthropogenically-induced trends as early as the 1920s. Dates of emergence of a number of representative ocean fields from the envelope of natural variability are calculated for global means and for spatial 'fingerprints' over a number of geographic regions. Emergence dates are consistent among these methods and insensitive to the exact choice of regions, but are generally earlier with more spatial information included. Emergence dates calculated for individual sampling stations are more variable and generally later, but means across stations are generally consistent with global emergence dates. The last sign reversal of linear trends calculated for periods of 20 or 30 years also functions as a diagnostic of emergence, and is generally consistent with other measures. The last sign reversal among 20 year trends is found to be a conservative measure (biased towards later emergence), while for 30 year trends it is found to have an early emergence bias, relative to emergence dates calculated by departure from the preindustrial mean. These results are largely independent of emission scenario, but the latest-emerging fields show a response to mitigation. A significant anthropogenic component of ocean variability has been present throughout the modern era of ocean observation.

  17. Modeling the Natural Biogeochemical Cycle of Mercury in the Global Ocean

    NASA Astrophysics Data System (ADS)

    Zhang, Y.; Jaegle, L.; Thompson, L.; Emerson, S. R.; Deutsch, C. A.; Trossman, D. S.; Shao, A.

    2012-12-01

    The ocean plays an important role in the biogeochemical cycling of mercury (Hg) because of its large reservoir mass and re-emission flux via evasion. The currently available Hg models, including 2D slab, 1D column and 0D box model cannot fully resolve the marine Hg cycle because of the lack of the proper spatial resolution. In this work, we have implemented Hg biogeochemistry in a state-of-the-art 3D offline ocean tracer model (OFFTRAC). OFFTRAC simulates the evolution of three Hg species (Hg0aq, HgIIaq and HgPaq), which are diffused and advected in the ocean. Hg0aq and HgII aq are interconverted in the surface ocean via parameterized photochemical and biological redox processes. The partitioning between HgIIaq and HgPaq depends on the local levels of particulate organic carbon (POC). The sinking of HgPaq is parameterized by coupling with the nutrient phosphorous cycle simulated in OFFTRAC. The reduction of HgIIaq to Hg0aq in the anaerobic subsurface water is proportional to the remineralizaiton of POC. OFFTRAC is coupled to a global simulation of the natural atmospheric Hg cycle in the GEOS-Chem chemical transport model. The GEOS-Chem simulation includes a geogenic source and provides the atmospheric deposition flux of HgII to the ocean and atmospheric Hg0 concentrations. The riverine input of Hg is calculated based on the climatological monthly mean fresh water discharge from continental to ocean and the average soil concentrations near the river mouth. The results show that the riverine input enhances Hg concentrations at surface by a factor of 2-3 near large river mouths and nearby coastal regions. The riverine input approximately doubles surface Hg concentration over the Arctic because of the small basin volume. In the deep ocean, which is not influenced by anthropogenic emissions, the model results (1.1±0.3 pM) generally agree with the observed present-day total Hg concentration profiles (1.4±0.9 pM). In the surface ocean, observations show average total Hg

  18. Stabilization of dissolved trace metals at hydrothermal vent sites: Impact on their marine biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Sander, Sylvia G.; Powell, Zach D.; Koschinsky, Andrea; Kuzmanovski, Stefan; Kleint, Charlotte

    2014-05-01

    Hydrothermal vents have long been neglected as a significant source of several bioactive trace metals as it was assumed that elements such as Fe, Mn, and Cu etc., precipitate in extensor forming poly-metallic sulfide and oxy-hydroxy sediments in the relative vicinity of the emanation site. However, recently this paradigm has been reviewed since the stabilization of dissolved Fe and Cu from hydrothermal vents was observed [1, 2] and increased concentrations of trace metals can be traced from their hydrothermal source thousands of kilometres through the ocean basins [3]. Furthermore several independent modelling attempts have shown that not only a stabilization of dissolved hydrothermal Fe and Cu is possible [4] but also that hydrothermalism must be a significant source of Fe to be able to balance the Fe-biogeochemical cycle [5]. Here we present new data that gives further evidence of the presence of copper stabilising organic and inorganic compounds in samples characterized by hydrothermal input. We can show that there are systematic differences in copper-complexing ligands at different vent sites such as 5°S on the Mid Atlantic Ridge, Brother Volcano on the Kermadec Arc, and some shallow hydrothermal CO2 seeps in the Bay of Plenty, New Zealand and the Mediterranean Sea. Quantitative and qualitative voltammetric data convincingly indicates that inorganic sulphur and organic thiols form the majority of the strong copper-complexing ligand pool in many of these hydrothermal samples. On average, the high temperature vents had a significantly higher copper binding capacity than the diffuse vents due to higher inorganic sulphur species concentrations. References: [1] Sander, S. G., et al. 2007. Organic complexation of copper in deep-sea hydrothermal vent systems. Environmental Chemistry 4: 81-89 [2] Bennett, S. A., et al. 2008. The distribution and stabilisation of dissolved Fe in deep-sea hydrothermal plumes. Earth and Planetary Science Letters 270: 157-167. [3] Wu J

  19. Improvement of wine terroir management according to biogeochemical cycle of nitrogen in soil

    NASA Astrophysics Data System (ADS)

    Najat, Nassr; Aude, Langenfeld; Mohammed, Benbrahim; Lionel, Ley; Laurent, Deliere; Jean-Pascal, Goutouly; David, Lafond; Marie, Thiollet-Scholtus

    2015-04-01

    Good wine terroir production implies a well-balanced Biogeochemical Cycle of Nitrogen (BCN) at field level i.e. in soil and in plant. Nitrogen is very important for grape quality and soil sustainability. The mineralization of organic nitrogen is the main source of mineral nitrogen for the vine. This mineralization depends mainly on the soil microbial activity. This study is focused on the functional microbial populations implicated in the BCN, in particular nitrifying bacteria. An experimental network with 6 vine sites located in Atlantic coast (Loire valley and Bordeaux) and in North-East (Alsace) of France has been set up since 2012. These vine sites represent a diversity of environmental factors (i.e. soil and climate). The adopted approach is based on the measure of several indicators to assess nitrogen dynamic in soil, i.e. nitrogen mineralization, regarding microbial biomass and activity. Statistical analyses are performed to determine the relationship between biological indicator and nitrogen mineralisation regarding farmer's practices. The variability of the BCN indicators seems to be correlated to the physical and chemical parameters in the soil of the field. For all the sites, the bacterial biomass is correlated to the rate and kinetic of nitrogen in soil, however this bioindicator depend also on others parameters. Moreover, the functional bacterial diversity depends on the soil organic matter content. Differences in the bacterial biomass and kinetic of nitrogen mineralization are observed between the sites with clayey (Loire valley site) and sandy soils (Bordeaux site). In some tested vine systems, effects on bacterial activity and nitrogen dynamic are also observed depending on the farmer's practices: soil tillage, reduction of inputs, i.e. pesticides and fertilizers, and soil cover management between rows. The BCN indicators seem to be strong to assess the dynamics of the nitrogen in various sites underline the functional diversity of the soils. These

  20. Integrating biorefinery and farm biogeochemical cycles offsets fossil energy and mitigates soil carbon losses.

    PubMed

    Adler, Paul R; Mitchell, James G; Pourhashem, Ghasideh; Spatari, Sabrina; Del Grosso, Stephen J; Parton, William J

    2015-06-01

    Crop residues are potentially significant sources of feedstock for biofuel production in the United States. However, there are concerns with maintaining the environmental functions of these residues while also serving as a feedstock for biofuel production. Maintaining soil organic carbon (SOC) along with its functional benefits is considered a greater constraint than maintaining soil erosion losses to an acceptable level. We used the biogeochemical model DayCent to evaluate the effect of residue removal, corn stover, and wheat and barley straw in three diverse locations in the USA. We evaluated residue removal with and without N replacement, along with application of a high-lignin fermentation byproduct (HLFB), the residue by-product comprised of lignin and small quantities of nutrients from cellulosic ethanol production. SOC always decreased with residue harvest, but the decrease was greater in colder climates when expressed on a life cycle basis. The effect of residue harvest on soil N2O emissions varied with N addition and climate. With N addition, N2O emissions always increased, but the increase was greater in colder climates. Without N addition, N2O emissions increased in Iowa, but decreased in Maryland and North Carolina with crop residue harvest. Although SOC was lower with residue harvest when HLFB was used for power production instead of being applied to land, the avoidance of fossil fuel emissions to the atmosphere by utilizing the cellulose and hemicellulose fractions of crop residue to produce ethanol (offsets) reduced the overall greenhouse gas (GHG) emissions because most of this residue carbon would normally be lost during microbial respiration. Losses of SOC and reduced N mineralization could both be mitigated with the application of HLFB to the land. Therefore, by returning the high-lignin fraction of crop residue to the land after production of ethanol at the biorefinery, soil carbon levels could be maintained along with the functional benefit of

  1. Belowground Carbon Allocation to Ectomycorrhizal Fungi Links Biogeochemical Cycles of Boron and Nitrogen

    NASA Astrophysics Data System (ADS)

    Lucas, R. W.; Högberg, P.; Ingri, J. N.

    2011-12-01

    Boron (B) is an essential micronutrient to most trees and represents an important limiting resource in some regions, deficient trees experiencing the loss of apical dominance, altered stem growth, and even tree death in extreme cases. Similar to the acquisition of most soil nutrients, B is likely supplied to host trees by mycorrhizal symbionts in exchange for recently fixed carbohydrates. In this way, belowground allocation of photosynthate, which drives the majority of biological processes belowground, links the biogeochemical cycles of B and nitrogen (N). Using a long-term N addition experiment in a Pinus sylvestris forest that has been ongoing for 41 years, we examined how the availability of inorganic N mediates the response of B isotopes in the tree needles, organic soil, and fungal pools in a boreal forest in northern Sweden. Using archived needle samples collected annually from the current year's needle crop, we observed δ11B to increase from 30.8 (0.5 se) to 41.8 (0.7 se)% in N fertilized plots from 1970 to 1979, a period of increasing B deficiency stress induced by N fertilization; the concentration of B in tree needles during 1979 dropping as low as 3.0 μg g-2. During the same period, B concentrations in tree needles from control plots remained relatively unchanged and δ11B remained at a steady state value of 34.1 (1.0 se)%. Following a distinct, large-scale, pulse labeling event in 1980 in which 2.5 kg ha-1 of isotopically distinct B was applied to all treatment and control plots to alleviate the N-induced B deficiency, concentrations of B in current needles increased immediately in all treatments, the magnitude of the response being dependent upon the N treatment. But unlike other pool dilution studies, δ11B of current tree needles did not return to pre-addition, steady-state levels. Instead, δ11B continued to decrease over time in both N addition and control treatments. This unexpected pattern has not been previously described but can be explained

  2. Final Project Report: "Exploratory Research: Mercury Stable Isotopes as Indicators of the Biogeochemical Cycling of Mercury"

    SciTech Connect

    Johnson, Thomas M

    2012-08-01

    This is the final project report for award DE-SC0005351, which supported the research project "Exploratory Research: Mercury Stable Isotopes as Indicators of the Biogeochemical Cycling of Mercury. "This exploratory project investigated the use of mercury (Hg) stable isotope measurements as a new approach to study how Hg moves and changes its chemical form in environmental systems, with particular focus on the East Fork of Poplar Creek (EFPC) near the DOE Y-12 plant (a Hg contamination source). This study developed analytical methods and collected pilot data that have set the stage for more detailed studies and have begun to provide insights into Hg movement and chemical changes. The overall Hg stable isotope approach was effective. The Hg isotope analysis methods yielded high-precision measurements of the sediment, water, and fish samples analyzed; quality control measures demonstrated the precision. The pilot data show that the 202Hg/198Hg, 199Hg/198Hg, and 201Hg/198Hg isotope ratios vary in this system. 202Hg/198Hg ratios of the Hg released from the Y-12 plant are relatively high, and those of the regional Hg background in soils and river sediments are significantly lower. Unfortunately, 202Hg/198Hg differences that might have been useful to distinguish early Hg releases from later releases were not observed. However, 202Hg/198Hg ratios in sediments do provide insights into chemical transformations that may occur as Hg moves through the system. Furthermore, 199Hg/198Hg and 201Hg/198Hg ratio analyses of fish tissues indicate that the effects of sunlight-driven chemical reactions on the Hg that eventually ends up in EFPC fish are measureable, but small. These results provide a starting point for a more detailed study (already begun at Univ. of Michigan) that will continue Hg isotope ratio work aimed at improving understanding of how Hg moves, changes chemically, and does or does not take on more highly toxic forms in the Oak Ridge area. This work also benefits

  3. Integrating biorefinery and farm biogeochemical cycles offsets fossil energy and mitigates soil carbon losses.

    PubMed

    Adler, Paul R; Mitchell, James G; Pourhashem, Ghasideh; Spatari, Sabrina; Del Grosso, Stephen J; Parton, William J

    2015-06-01

    Crop residues are potentially significant sources of feedstock for biofuel production in the United States. However, there are concerns with maintaining the environmental functions of these residues while also serving as a feedstock for biofuel production. Maintaining soil organic carbon (SOC) along with its functional benefits is considered a greater constraint than maintaining soil erosion losses to an acceptable level. We used the biogeochemical model DayCent to evaluate the effect of residue removal, corn stover, and wheat and barley straw in three diverse locations in the USA. We evaluated residue removal with and without N replacement, along with application of a high-lignin fermentation byproduct (HLFB), the residue by-product comprised of lignin and small quantities of nutrients from cellulosic ethanol production. SOC always decreased with residue harvest, but the decrease was greater in colder climates when expressed on a life cycle basis. The effect of residue harvest on soil N2O emissions varied with N addition and climate. With N addition, N2O emissions always increased, but the increase was greater in colder climates. Without N addition, N2O emissions increased in Iowa, but decreased in Maryland and North Carolina with crop residue harvest. Although SOC was lower with residue harvest when HLFB was used for power production instead of being applied to land, the avoidance of fossil fuel emissions to the atmosphere by utilizing the cellulose and hemicellulose fractions of crop residue to produce ethanol (offsets) reduced the overall greenhouse gas (GHG) emissions because most of this residue carbon would normally be lost during microbial respiration. Losses of SOC and reduced N mineralization could both be mitigated with the application of HLFB to the land. Therefore, by returning the high-lignin fraction of crop residue to the land after production of ethanol at the biorefinery, soil carbon levels could be maintained along with the functional benefit of

  4. Effects of Snowpack on Biogeochemical Cycling and Microbial Activity in Prairie Soils

    NASA Astrophysics Data System (ADS)

    Schade, J. D.; Lynch, L. M.; Lapo, K. E.; Brownlee, A.

    2012-12-01

    A central prediction of current climate change models is a shift towards less frequent, more intense precipitation events and a shorter and smaller snowpack period in many regions, including the upper Midwest. Previous work in Arctic ecosystems and forests of the northeastern US have shown strong impacts of changes in the depth of snow on soil respiration and biogeochemical cycling. In spite of this, we still lack enough information on ecosystem processes during winter months to claim a general understanding of the impacts of changes in snowpack and precipitation patterns on ecosystem structure and function. Our objective was to investigate seasonal patterns in soil microbial activity and carbon and nitrogen cycling and the impact of snow accumulation on these patterns in restored tall grass prairies in Minnesota. To meet these objectives we experimentally manipulated snowpack depth in replicate plots in two restored prairies in southern Minnesota. In all plots, we measured soil temperature and respiration in the field once in October and November 2010 and every 7-10 days between January and September 2011. Soil samples were collected from each plot 10 times between Oct 2010 and November 2011 and analyzed for extracellular enzyme activity (EEA), extractable C, N, and P (phosphorus), and microbial biomass C, N, and P. In July of 2011, we also collected plant samples to assess differences in plant community composition and biomass. Soil temperatures under ambient snow were slightly above freezing and remained very stable throughout the winter, while in snow removal plots, temperature was highly variable and remained below freezing, often as low as -10 degrees C. Soil respiration in the winter was significantly higher under ambient snow. During spring thaw in March, respiration increased in all plots for roughly three weeks, after which rates dropped back to low levels. This increase was significantly higher in snow removal plots in both fields. We also observed

  5. Coupled biogeochemical cycles in riparian zones with contrasting hydrogeomorphic characteristics in the US Midwest

    NASA Astrophysics Data System (ADS)

    Liu, X.

    2012-12-01

    In this study we aims to understand what drives the fate and transport of multiple contaminants sensitive to soil redox condition across hydrogeomorphic (HGM) gradient and evaluate overall biogeochemical functions of riparian zones regarding those contaminants. We conducted monthly field work for 19 consecutive months from November 2009 to May 2011 at three study sites representative for main HGM types at the US Midwest. We collected the parameters from different sources which include field parameters, such as topography, water table depth, oxidation reduction potential (ORP) and dissolved oxygen (DO), and groundwater chemistry, such as NH4+, NO3-, PO43-, SO42-, CI- , and Hg and MeHg. Our results demonstrated that seasonal water table fluctuations and groundwater flows characteristics at three sites are strongly affected by their HGM setting. Specifically, the convergence of quick rise of water table, high ORP and sharp decrease in concentrations of NO3- and SO42 from field edge to stream edge (60-90% at LWD and 90% at WR) in spring after snowmelt and early May, which could be explained by that snow melt and early summer rainfall are major drivers of fluctuations of water table, variations of ORP and transport and transformation of contaminants. Riparian zones removed NO3- and SO42- during high water table but released Mercury in summer at both LWD and WR, and sulfate reduction, ammonia production and MeHg production all occurred when ORP and water tables were low in summer. These results might reflect the strong ORP control on these processes at landscape scale. These findings supported our hypothesis. Other findings however contrast to our hypothesis. For instances, unusual high concentrations of nitrate and Hg at WR suggest that the transport and fate of multiple contaminants relate not only to HGM settings but geographic location and land use. Negligible variations of P concentration in groundwater indicate that the transformation of P is not sensitive to soil

  6. Biogeochemical cycling of methylmercury in lakes and tundra watersheds of Arctic Alaska.

    PubMed

    Hammerschmidt, Chad R; Fitzgerald, William F; Lamborg, Carl H; Balcom, Prentiss H; Tseng, C Mao

    2006-02-15

    The fate of atmospherically deposited and environmentally active Hg is uncertain in the Arctic, and of greatest toxicological concern is the transformation to monometh-ylmercury (MMHg). Lake/watershed mass balances were developed to examine MMHg cycling in four northern Alaska lakes near the ecological research station at Toolik Lake (68 degrees 38' N, 149 degrees 36' W). Primary features of the cycle are watershed runoff, sedimentary production and mobilization, burial, and photodecomposition in the water column. The principal source of MMHg is in situ benthic production with 80-91% of total inputs provided by diffusion from sediments. The production and contribution of MMHg from tundra watersheds is modest. Photodecomposition, though confined to a short ice-free season, provides the primary control for MMHg (66-88% of total inputs) and greatly attenuates bioaccumulation. Solid-phase MMHg and gross potential rates of Hg methylation, assayed with an isotopic tracer, vary positively with the level of inorganic Hg in filtered pore water, indicating that MMHg production is Hg-limited in these lakes. Moreover, sediment-waterfluxes of MMHg (i.e., net production at steady state) are related to sediment Hg loadings from the atmosphere. These results suggest that loadings of Hg derived from atmospheric deposition are a major factor affecting MMHg cycling in arctic ecosystems. However, environmental changes associated with warming of the Arctic (e.g., increased weathering, temperature, productivity, and organic loadings) may enhance MMHg bioaccumulation by stimulating Hg methylation and inhibiting photodecomposition.

  7. Loss in microbial diversity affects nitrogen cycling in soil

    PubMed Central

    Philippot, Laurent; Spor, Aymé; Hénault, Catherine; Bru, David; Bizouard, Florian; Jones, Christopher M; Sarr, Amadou; Maron, Pierre-Alain

    2013-01-01

    Microbial communities have a central role in ecosystem processes by driving the Earth's biogeochemical cycles. However, the importance of microbial diversity for ecosystem functioning is still debated. Here, we experimentally manipulated the soil microbial community using a dilution approach to analyze the functional consequences of diversity loss. A trait-centered approach was embraced using the denitrifiers as model guild due to their role in nitrogen cycling, a major ecosystem service. How various diversity metrics related to richness, eveness and phylogenetic diversity of the soil denitrifier community were affected by the removal experiment was assessed by 454 sequencing. As expected, the diversity metrics indicated a decrease in diversity in the 1/103 and 1/105 dilution treatments compared with the undiluted one. However, the extent of dilution and the corresponding reduction in diversity were not commensurate, as a dilution of five orders of magnitude resulted in a 75% decrease in estimated richness. This reduction in denitrifier diversity resulted in a significantly lower potential denitrification activity in soil of up to 4–5 folds. Addition of wheat residues significantly increased differences in potential denitrification between diversity levels, indicating that the resource level can influence the shape of the microbial diversity–functioning relationship. This study shows that microbial diversity loss can alter terrestrial ecosystem processes, which suggests that the importance of functional redundancy in soil microbial communities has been overstated. PMID:23466702

  8. Biogeochemical and hydrologic processes controlling mercury cycling in Great Salt Lake, Utah

    NASA Astrophysics Data System (ADS)

    Naftz, D.; Kenney, T.; Angeroth, C.; Waddell, B.; Darnall, N.; Perschon, C.; Johnson, W. P.

    2006-12-01

    Great Salt Lake (GSL), in the Western United States, is a terminal lake with a highly variable surface area that can exceed 5,100 km2. The open water and adjacent wetlands of the GSL ecosystem support millions of migratory waterfowl and shorebirds from throughout the Western Hemisphere, as well as a brine shrimp industry with annual revenues exceeding 70 million dollars. Despite the ecologic and economic significance of GSL, little is known about the biogeochemical cycling of mercury (Hg) and no water-quality standards currently exist for this system. Whole water samples collected since 2000 were determined to contain elevated concentrations of total Hg (100 ng/L) and methyl Hg (33 ng/L). The elevated levels of methyl Hg are likely the result of high rates of SO4 reduction and associated Hg methylation in persistently anoxic areas of the lake at depths greater than 6.5 m below the water surface. Hydroacoustic equipment deployed in this anoxic layer indicates a "conveyor belt" flow system that can distribute methyl Hg in a predominantly southerly direction throughout the southern half of GSL (fig. 1, URL: http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs- AUG06.pdf). Periodic and sustained wind events on GSL may result in transport of the methyl Hg-rich anoxic water and bottom sediments into the oxic and biologically active regions. Sediment traps positioned above the anoxic brine interface have captured up to 6 mm of bottom sediment during cumulative wind-driven resuspension events (fig. 2, URL:http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs-AUG06.pdf). Vertical velocity data collected with hydroacoustic equipment indicates upward flow > 1.5 cm/sec during transient wind events (fig. 3, URL:http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs-AUG06.pdf). Transport of methyl Hg into the oxic regions of GSL is supported by biota samples. The median Hg concentration (wet weight) in brine shrimp increased seasonally from the spring to fall time period and is likely a

  9. Assessment of diel chemical and isotopic techniques to investigate biogeochemical cycles in the upper Klamath River, Oregon, USA

    USGS Publications Warehouse

    Poulson, S.R.; Sullivan, A.B.

    2009-01-01

    The upper Klamath River experiences a cyanobacterial algal bloom and poor water quality during the summer. Diel chemical and isotopic techniques have been employed in order to investigate the rates of biogeochemical processes. Four diel measurements of field parameters (temperature, pH, dissolved oxygen concentrations, and alkalinity) and stable isotope compositions (dissolved oxygen-??18O and dissolved inorganic carbon-??13C) have been performed between June 2007 and August 2008. Significant diel variations of pH, dissolved oxygen (DO) concentration, and DO-??18O were observed, due to varying rates of primary productivity vs. respiration vs. gas exchange with air. Diel cycles are generally similar to those previously observed in river systems, although there are also differences compared to previous studies. In large part, these different diel signatures are the result of the low turbulence of the upper Klamath River. Observed changes in the diel signatures vs. sampling date reflect the evolution of the status of the algal bloom over the course of the summer. Results indicate the potential utility of applying diel chemical and stable isotope techniques to investigate the rates of biogeochemical cycles in slow-moving rivers, lakes, and reservoirs, but also illustrate the increased complexity of stable isotope dynamics in these low-turbulence systems compared to well-mixed aquatic systems. ?? 2009 Elsevier B.V.

  10. Quantifying Biogeochemical Cycles of CO2 and CH4 over the Land and Aquatic Ecosystems in Northern Eurasia

    NASA Astrophysics Data System (ADS)

    Zhuang, Q.

    2015-12-01

    Under the auspices of the NASA Land-Use and Land-Cover Change Program, we have made a significant progress on quantifying both CO2 and CH4 biogeochemical cycles of the land and aquatic systems in Northern Eurasia over the last several decades. Our quantification is based on in situ and satellite data of ecosystem distribution, land cover distribution, carbon, water and energy fluxes, fire disturbances, plant biomass inventory, atmospheric CO2 and CH4, and meteorology. The evaluated process-based modeling systems for both land and aquatic ecosystems for the historical period have been used to project carbon fluxes during the 21st century over this region. The uncertainty associated with these carbon-based gases is also quantified. This presentation will update these quantifications by examining: 1) the impacts of fire disturbances on land ecosystem CO2 budget in the last few decades; 2) net CO2 and CH4 exchanges of the land and aquatic ecosystems in both historical and future periods. Our study has also assessed the role of permafrost dynamics in both land and aquatic ecosystem carbon and water dynamics in this region. Our research provides an integrated land and aquatic ecosystem model that can be used to address biogeochemical cycles of carbon and water in this climate-sensitive region.

  11. Red waters of Myrionecta rubra are biogeochemical hotspots for the Columbia River estuary with impacts on primary/secondary productions and nutrient cycles

    SciTech Connect

    Herfort, Lydie; Peterson, Tawnya D.; Prahl, Fredrick G.; McCue, Lee Ann; Needoba, Joe A.; Crump, Byron C.; Roegner, G. Curtis; Campbell, Victoria; Zuber, Peter A.

    2012-02-29

    The localized impact of blooms of the mixotrophic ciliate Myrionecta rubra in the Columbia River estuary during 2007-2010 was evaluated with biogeochemical, light microscopy, physiological and molecular data. M. rubra affected surrounding estuarine nutrient cycles, as indicated by high and low concentrations of organic nutrients and inorganic nitrogen, respectively, associated with red waters. M. rubra blooms also altered the energy transfer pattern in patches of the estuarine water that contain the ciliate by creating areas characterized by high primary production and elevated levels of fresh autochthonous particulate organic matter, therefore shifting the trophic status in emergent red water areas of the estuary from net heterotrophy towards autotrophy. The pelagic estuarine bacterial community structure was unaffected by M. rubra abundance, but red waters of the ciliate do offer a possible link between autotrophic and heterotrophic processes since they were associated with elevated dissolved organic matter and enhanced microbial secondary production. Taken together these findings suggest that M. rubra red waters are biogeochemical hotspots of the Columbia River estuary.

  12. Molecular and biogeochemical evidence for methane cycling beneath the western margin of the Greenland Ice Sheet

    PubMed Central

    Dieser, Markus; Broemsen, Erik L J E; Cameron, Karen A; King, Gary M; Achberger, Amanda; Choquette, Kyla; Hagedorn, Birgit; Sletten, Ron; Junge, Karen; Christner, Brent C

    2014-01-01

    Microbial processes that mineralize organic carbon and enhance solute production at the bed of polar ice sheets could be of a magnitude sufficient to affect global elemental cycles. To investigate the biogeochemistry of a polar subglacial microbial ecosystem, we analyzed water discharged during the summer of 2012 and 2013 from Russell Glacier, a land-terminating outlet glacier at the western margin of the Greenland Ice Sheet. The molecular data implied that the most abundant and active component of the subglacial microbial community at these marginal locations were bacteria within the order Methylococcales (59–100% of reverse transcribed (RT)-rRNA sequences). mRNA transcripts of the particulate methane monooxygenase (pmoA) from these taxa were also detected, confirming that methanotrophic bacteria were functional members of this subglacial ecosystem. Dissolved methane ranged between 2.7 and 83 μM in the subglacial waters analyzed, and the concentration was inversely correlated with dissolved oxygen while positively correlated with electrical conductivity. Subglacial microbial methane production was supported by δ13C-CH4 values between −64‰ and −62‰ together with the recovery of RT-rRNA sequences that classified within the Methanosarcinales and Methanomicrobiales. Under aerobic conditions, >98% of the methane in the subglacial water was consumed over ∼30 days incubation at ∼4 °C and rates of methane oxidation were estimated at 0.32 μM per day. Our results support the occurrence of active methane cycling beneath this region of the Greenland Ice Sheet, where microbial communities poised in oxygenated subglacial drainage channels could serve as significant methane sinks. PMID:24739624

  13. Molecular and biogeochemical evidence for methane cycling beneath the western margin of the Greenland Ice Sheet.

    PubMed

    Dieser, Markus; Broemsen, Erik L J E; Cameron, Karen A; King, Gary M; Achberger, Amanda; Choquette, Kyla; Hagedorn, Birgit; Sletten, Ron; Junge, Karen; Christner, Brent C

    2014-11-01

    Microbial processes that mineralize organic carbon and enhance solute production at the bed of polar ice sheets could be of a magnitude sufficient to affect global elemental cycles. To investigate the biogeochemistry of a polar subglacial microbial ecosystem, we analyzed water discharged during the summer of 2012 and 2013 from Russell Glacier, a land-terminating outlet glacier at the western margin of the Greenland Ice Sheet. The molecular data implied that the most abundant and active component of the subglacial microbial community at these marginal locations were bacteria within the order Methylococcales (59-100% of reverse transcribed (RT)-rRNA sequences). mRNA transcripts of the particulate methane monooxygenase (pmoA) from these taxa were also detected, confirming that methanotrophic bacteria were functional members of this subglacial ecosystem. Dissolved methane ranged between 2.7 and 83 μM in the subglacial waters analyzed, and the concentration was inversely correlated with dissolved oxygen while positively correlated with electrical conductivity. Subglacial microbial methane production was supported by δ(13)C-CH4 values between -64‰ and -62‰ together with the recovery of RT-rRNA sequences that classified within the Methanosarcinales and Methanomicrobiales. Under aerobic conditions, >98% of the methane in the subglacial water was consumed over ∼30 days incubation at ∼4 °C and rates of methane oxidation were estimated at 0.32 μM per day. Our results support the occurrence of active methane cycling beneath this region of the Greenland Ice Sheet, where microbial communities poised in oxygenated subglacial drainage channels could serve as significant methane sinks.

  14. Enhanced biogeochemical cycling and subsequent reduction of hydraulic conductivity associated with soil-layer interfaces in the vadose zone

    PubMed Central

    Hansen, David J.; McGuire, Jennifer T.; Mohanty, Binayak P.

    2013-01-01

    Biogeochemical dynamics in the vadose zone are poorly understood due to the transient nature of chemical and hydrologic conditions, but are nonetheless critical to understanding chemical fate and transport. This study explored the effects of a soil layer on linked geochemical, hydrological, and microbiological processes. Three laboratory soil columns were constructed: a homogenized medium-grained sand, a homogenized organic-rich loam, and a sand-over-loam layered column. Upward and downward infiltration of water was evaluated during experiments to simulate rising water table and rainfall events respectively. In-situ collocated probes measured soil water content, matric potential, and Eh while water samples collected from the same locations were analyzed for Br−, Cl−, NO3−, SO42−, NH4+, Fe2+, and total sulfide. Compared to homogenous columns, the presence of a soil layer altered the biogeochemistry and water flow of the system considerably. Enhanced biogeochemical cycling was observed in the layered column over the texturally homogeneous soil columns. Enumerations of iron and sulfate reducing bacteria showed 1-2 orders of magnitude greater community numbers in the layered column. Mineral and soil aggregate composites were most abundant near the soil-layer interface; the presence of which, likely contributed to an observed order-of-magnitude decrease in hydraulic conductivity. These findings show that quantifying coupled hydrologic-biogeochemical processes occurring at small-scale soil interfaces is critical to accurately describing and predicting chemical changes at the larger system scale. Findings also provide justification for considering soil layering in contaminant fate and transport models because of its potential to increase biodegradation and/or slow the rate of transport of contaminants. PMID:22031578

  15. Simulating anchovy's full life cycle in the northern Aegean Sea (eastern Mediterranean): A coupled hydro-biogeochemical-IBM model

    NASA Astrophysics Data System (ADS)

    Politikos, D.; Somarakis, S.; Tsiaras, K. P.; Giannoulaki, M.; Petihakis, G.; Machias, A.; Triantafyllou, G.

    2015-11-01

    A 3-D full life cycle population model for the North Aegean Sea (NAS) anchovy stock is presented. The model is two-way coupled with a hydrodynamic-biogeochemical model (POM-ERSEM). The anchovy life span is divided into seven life stages/age classes. Embryos and early larvae are passive particles, but subsequent stages exhibit active horizontal movements based on specific rules. A bioenergetics model simulates the growth in both the larval and juvenile/adult stages, while the microzooplankton and mesozooplankton fields of the biogeochemical model provide the food for fish consumption. The super-individual approach is adopted for the representation of the anchovy population. A dynamic egg production module, with an energy allocation algorithm, is embedded in the bioenergetics equation and produces eggs based on a new conceptual model for anchovy vitellogenesis. A model simulation for the period 2003-2006 with realistic initial conditions reproduced well the magnitude of population biomass and daily egg production estimated from acoustic and daily egg production method (DEPM) surveys, carried out in the NAS during June 2003-2006. Model simulated adult and egg habitats were also in good agreement with observed spatial distributions of acoustic biomass and egg abundance in June. Sensitivity simulations were performed to investigate the effect of different formulations adopted for key processes, such as reproduction and movement. The effect of the anchovy population on plankton dynamics was also investigated, by comparing simulations adopting a two-way or a one-way coupling of the fish with the biogeochemical model.

  16. Enhanced biogeochemical cycling and subsequent reduction of hydraulic conductivity associated with soil-layer interfaces in the vadose zone.

    PubMed

    Hansen, David J; McGuire, Jennifer T; Mohanty, Binayak P

    2011-01-01

    Biogeochemical dynamics in the vadose zone are poorly understood due to the transient nature of chemical and hydrologic conditions but are nonetheless critical to understanding chemical fate and transport. This study explored the effects of a soil layer on linked geochemical, hydrological, and microbiological processes. Three laboratory soil columns were constructed: a homogenized medium-grained sand, a homogenized organic-rich loam, and a sand-over-loam layered column. Upward and downward infiltration of water was evaluated during experiments to simulate rising water table and rainfall events, respectively. In situ collocated probes measured soil water content, matric potential, and Eh. Water samples collected from the same locations were analyzed for Br, Cl, NO, SO, NH, Fe, and total sulfide. Compared with homogeneous columns, the presence of a soil layer altered the biogeochemistry and water flow of the system considerably. Enhanced biogeochemical cycling was observed in the layered column over the texturally homogeneous soil columns. Enumerations of iron- and sulfate-reducing bacteria showed 1 to 2 orders of magnitude greater community numbers in the layered column. Mineral and soil aggregate composites were most abundant near the soil-layer interface, the presence of which likely contributed to an observed order-of-magnitude decrease in hydraulic conductivity. These findings show that quantifying coupled hydrologic-biogeochemical processes occurring at small-scale soil interfaces is critical to accurately describing and predicting chemical changes at the larger system scale. These findings also provide justification for considering soil layering in contaminant fate and transport models because of its potential to increase biodegradation or to slow the rate of transport of contaminants.

  17. Enhanced biogeochemical cycling and subsequent reduction of hydraulic conductivity associated with soil-layer interfaces in the vadose zone.

    PubMed

    Hansen, David J; McGuire, Jennifer T; Mohanty, Binayak P

    2011-01-01

    Biogeochemical dynamics in the vadose zone are poorly understood due to the transient nature of chemical and hydrologic conditions but are nonetheless critical to understanding chemical fate and transport. This study explored the effects of a soil layer on linked geochemical, hydrological, and microbiological processes. Three laboratory soil columns were constructed: a homogenized medium-grained sand, a homogenized organic-rich loam, and a sand-over-loam layered column. Upward and downward infiltration of water was evaluated during experiments to simulate rising water table and rainfall events, respectively. In situ collocated probes measured soil water content, matric potential, and Eh. Water samples collected from the same locations were analyzed for Br, Cl, NO, SO, NH, Fe, and total sulfide. Compared with homogeneous columns, the presence of a soil layer altered the biogeochemistry and water flow of the system considerably. Enhanced biogeochemical cycling was observed in the layered column over the texturally homogeneous soil columns. Enumerations of iron- and sulfate-reducing bacteria showed 1 to 2 orders of magnitude greater community numbers in the layered column. Mineral and soil aggregate composites were most abundant near the soil-layer interface, the presence of which likely contributed to an observed order-of-magnitude decrease in hydraulic conductivity. These findings show that quantifying coupled hydrologic-biogeochemical processes occurring at small-scale soil interfaces is critical to accurately describing and predicting chemical changes at the larger system scale. These findings also provide justification for considering soil layering in contaminant fate and transport models because of its potential to increase biodegradation or to slow the rate of transport of contaminants. PMID:22031578

  18. Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils.

    PubMed

    Jung, Jaejoon; Yeom, Jinki; Kim, Jisun; Han, Jiwon; Lim, Hyoun Soo; Park, Hyun; Hyun, Seunghun; Park, Woojun

    2011-12-01

    The microbial community (bacterial, archaeal, and fungi) and eight genes involved in the nitrogen biogeochemical cycle (nifH, nitrogen fixation; bacterial and archaeal amoA, ammonia oxidation; narG, nitrate reduction; nirS, nirK, nitrite reduction; norB, nitric oxide reduction; and nosZ, nitrous oxide reduction) were quantitatively assessed in this study, via real-time PCR with DNA extracted from three Antarctic soils. Interestingly, AOB amoA was found to be more abundant than AOA amoA in Antarctic soils. The results of microcosm studies revealed that the fungal and archaeal communities were diminished in response to warming temperatures (10 °C) and that the archaeal community was less sensitive to nitrogen addition, which suggests that those two communities are well-adapted to colder temperatures. AOA amoA and norB genes were reduced with warming temperatures. The abundance of only the nifH and nirK genes increased with both warming and the addition of nitrogen. NirS-type denitrifying bacteria outnumbered NirK-type denitrifiers regardless of the treatment used. Interestingly, dramatic increases in both NirS and NirK-types denitrifiers were observed with nitrogen addition. NirK types increase with warming, but NirS-type denitrifiers tend to be less sensitive to warming. Our findings indicated that the Antarctic microbial nitrogen cycle could be dramatically altered by temperature and nitrogen, and that warming may be detrimental to the ammonia-oxidizing archaeal community. To the best of our knowledge, this is the first report to investigate genes associated with each process of the nitrogen biogeochemical cycle in an Antarctic terrestrial soil environment.

  19. Integrating 'omic' data and biogeochemical modeling: the key to understanding the microbial regulation of matter cycling in soil

    NASA Astrophysics Data System (ADS)

    Pagel, Holger; Kandeler, Ellen; Seifert, Jana; Camarinha-Silva, Amélia; Kügler, Philipp; Rennert, Thilo; Poll, Christian; Streck, Thilo

    2016-04-01

    Matter cycling in soils and associated soil functions are intrinsically controlled by microbial dynamics. It is therefore crucial to consider functional traits of microorganisms in biogeochemical models. Tremendous advances in 'omic' methods provide a plethora of data on physiology, metabolic capabilities and ecological life strategies of microorganisms in soil. Combined with isotopic techniques, biochemical pathways and transformations can be identified and quantified. Such data have been, however, rarely used to improve the mechanistic representation of microbial dynamics in soil organic matter models. It is the goal of the Young Investigator Group SoilReg to address this challenge. Our general approach is to tightly integrate experiments and biochemical modeling. NextGen sequencing will be applied to identify key functional groups. Active microbial groups will be quantified by measurements of functional genes and by stable isotope probing methods of DNA and proteins. Based on this information a biogeochemical model that couples a mechanistic representation of microbial dynamics with physicochemical processes will be set up and calibrated. Sensitivity and stability analyses of the model as well as scenario simulations will reveal the importance of intrinsic and extrinsic controls of organic matter turnover. We will demonstrate our concept and present first results of two case studies on pesticide degradation and methane oxidation.

  20. Linking Nitrogen-Cycling Microbial Communities to Environmental Fluctuations and Biogeochemical Activity in a Large, Urban Estuary: the San Francisco Bay-Delta

    NASA Astrophysics Data System (ADS)

    Francis, C.

    2015-12-01

    Nitrogen (N) availability is an important factor controlling productivity and thus carbon cycling in estuaries. The fate of N in estuaries depends on the activities of the microbes that carry out the N-cycle, which in turn depend on factors such as organic matter availability, dissolved inorganic N, salinity, oxygen, and temperature. Key microbial N transformations include nitrification (the aerobic oxidation of ammonia to nitrite and nitrate) and denitrification (the anaerobic reduction of nitrate to dinitrogen gas). While denitrification leads to N loss, nitrification is the only link between reduced N (produced by decomposition) and oxidized N (substrates for N loss processes), and both processes are known to produce nitrous oxide (N2O), a potent greenhouse gas. Understanding controls of N-cycling in the San Francisco Bay-Delta (SFBD)—the largest estuary on the west coast of North America—is particularly important, as this urban estuary is massively polluted with N, even compared to classic "eutrophic" systems. Interestingly, the SFBD has been spared the detrimental consequences of nutrient enrichment, largely due to high suspended sediment concentrations (and thus low light penetration) throughout the water column, combined with high grazing pressure. However, the recent "clearing" of SFBD waters due to a sharp decrease in suspended sediments may significantly alter the ecology of the estuary, by increasing phytoplankton growth. Thus, the SFBD may be losing its historical resilience to eutrophication, and may soon be "high-nutrient, low-chlorophyll" no more. Elucidating the environmental factors affecting the community structure, activity, and functioning of N-cycling microbes in SFBD is crucial for determining how changes in turbidity and productivity will be propagated throughout the ecosystem. While substantial ecological research in the SFBD has focused on phytoplankton and food webs, bacterial and archaeal communities have received far less attention

  1. Short-term effects of salinity reduction and drainage on salt-marsh biogeochemical cycling and Spartina (Cordgrass) production

    USGS Publications Warehouse

    Portnoy, J.W.; Valiela, I.

    1997-01-01

    To assess the biogeochemical effects of tidal restrictions on salt-marsh sulfur cycling and plant growth, cores of short-form Spartina alterniflora peat were desalinated and kept either waterlogged or drained in greenhouse microcosms. Changes in net Spartina production, and porewater and solid phase chemistry of treated cores were compared to natural conditions in the field collection site over a 21-mo period. Net production among treatments increased significantly in drained and waterlogged peat compared to field conditions during the first growing season. Constantly high sulfide in waterlogged cores accompanied reduced plant growth. Aeration invigorated growth in drained cores but led to oxidization of sulfide minerals and to lowered pH. During the second growing season, growth declined in the drained treatment, probably because of acidification and decreased dissolved inorganic nitrogen. Results are pertinent to the success of current wetland protection and restoration activities in the coastal zone.

  2. Exploring a microbial ecosystem approach to modeling deep ocean biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Zakem, E.; Follows, M. J.

    2014-12-01

    Though microbial respiration of organic matter in the deep ocean governs ocean and atmosphere biogeochemistry, it is not represented mechanistically in current global biogeochemical models. We seek approaches that are feasible for a global resolution, yet still reflect the enormous biodiversity of the deep microbial community and its associated metabolic pathways. We present a modeling framework grounded in thermodynamics and redox reaction stoichiometry that represents diverse microbial metabolisms explicitly. We describe a bacterial/archaeal functional type with two parameters: a growth efficiency representing the chemistry underlying a bacterial metabolism, and a rate limitation given by the rate of uptake of each of the necessary substrates for that metabolism. We then apply this approach to answer questions about microbial ecology. As a start, we resolve two dominant heterotrophic respiratory pathways- reduction of oxygen and nitrate- and associated microbial functional types. We combine these into an ecological model and a two-dimensional ocean circulation model to explore the organization, biogeochemistry, and ecology of oxygen minimum zones. Intensified upwelling and lateral transport conspire to produce an oxygen minimum at mid-depth, populated by anaerobic denitrifiers. This modeling approach should ultimately allow for the emergence of bacterial biogeography from competition of metabolisms and for the incorporation of microbial feedbacks to the climate system.

  3. The role of industrial nitrogen in the global nitrogen biogeochemical cycle

    PubMed Central

    Gu, Baojing; Chang, Jie; Min, Yong; Ge, Ying; Zhu, Qiuan; Galloway, James N.; Peng, Changhui

    2013-01-01

    Haber-Bosch nitrogen (N) has been increasingly used in industrial products, e.g., nylon, besides fertilizer. Massive numbers of species of industrial reactive N (Nr) have emerged and produced definite consequences but receive little notice. Based on a comprehensive inventory, we show that (1) the industrial N flux has increased globally from 2.5 to 25.4 Tg N yr−1 from 1960 through 2008, comparable to the NOx emissions from fossil fuel combustion; (2) more than 25% of industrial products (primarily structural forms, e.g., nylon) tend to accumulate in human settlements due to their long service lives; (3) emerging Nr species define new N-assimilation and decomposition pathways and change the way that Nr is released to the environment; and (4) the loss of these Nr species to the environment has significant negative human and ecosystem impacts. Incorporating industrial Nr into urban environmental and biogeochemical models could help to advance urban ecology and environmental sciences. PMID:23999540

  4. Hypoxia in the Baltic Sea: biogeochemical cycles, benthic fauna, and management.

    PubMed

    Carstensen, Jacob; Conley, Daniel J; Bonsdorff, Erik; Gustafsson, Bo G; Hietanen, Susanna; Janas, Urzsula; Jilbert, Tom; Maximov, Alexey; Norkko, Alf; Norkko, Joanna; Reed, Daniel C; Slomp, Caroline P; Timmermann, Karen; Voss, Maren

    2014-02-01

    Hypoxia has occurred intermittently over the Holocene in the Baltic Sea, but the recent expansion from less than 10 000 km(2) before 1950 to >60 000 km(2) since 2000 is mainly caused by enhanced nutrient inputs from land and atmosphere. With worsening hypoxia, the role of sediments changes from nitrogen removal to nitrogen release as ammonium. At present, denitrification in the water column and sediments is equally important. Phosphorus is currently buried in sediments mainly in organic form, with an additional contribution of reduced Fe-phosphate minerals in the deep anoxic basins. Upon the transition to oxic conditions, a significant proportion of the organic phosphorus will be remineralized, with the phosphorus then being bound to iron oxides. This iron-oxide bound phosphorus is readily released to the water column upon the onset of hypoxia again. Important ecosystems services carried out by the benthic fauna, including biogeochemical feedback-loops and biomass production, are also lost with hypoxia. The results provide quantitative knowledge of nutrient release and recycling processes under various environmental conditions in support of decision support tools underlying the Baltic Sea Action Plan.

  5. Biogeochemical Cycles for Combining Chemical Knowledge and ESD Issues in Greek Secondary Schools Part II: Assessing the Impact of the Intervention

    ERIC Educational Resources Information Center

    Koutalidi, Sophia; Psallidas, Vassilis; Scoullos, Michael

    2016-01-01

    In searching for effective ways to combine science/chemical education with EE/ESD, new didactic materials were designed and produced focussing on biogeochemical cycles and their connection to sustainable development. The materials were experimentally applied in 16 Greek schools under the newly introduced compulsory "school project" which…

  6. Metatranscriptome Analysis of Aquifer Samples Reveals Unexpected Metabolic Lifestyles Relevant to Active Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Beller, H. R.; Jewell, T. N. M.; Karaoz, U.; Banfield, J. F.; Brodie, E.; Williams, K. H.

    2015-12-01

    Modern molecular ecology techniques are revealing the metabolic potential of uncultivated microorganisms, but there is still much to be learned about the actual biogeochemical roles of microbes that have cultivated relatives. Here, we present metatranscriptomic and metagenomic data from a field study that provides evidence of coupled redox processes that have not been documented in cultivated relatives and, indeed, represent strains with metabolic traits that are novel with respect to closely related isolates. The data come from omics analysis of groundwater samples collected during an experiment in which nitrate (a native electron acceptor) was injected into a perennially suboxic aquifer in Rifle (CO). Transcriptional data indicated that just two groups of chemolithoautotrophic bacteria accounted for a very large portion (~80%) of overall community gene expression: (1) members of the Fe(II)-oxidizing Gallionellaceae family and (2) strains of the S-oxidizing species, Sulfurimonas denitrificans. Metabolic lifestyles for Gallionellaceae strains that were novel compared to cultivated representatives included nitrate-dependent Fe(II) oxidation and S oxidation. Evidence for these metabolisms included highly correlated temporal expression in binned data of nitrate reductase (e.g., narGHI) genes (which have never been reported in Gallionellaceae genomes) and Fe(II) oxidation genes (e.g., mtoA) or S oxidation genes (e.g., dsrE, aprA). Of the two most active strains of S. denitrificans, only one showed strong expression of S oxidation genes, whereas the other was apparently using an unexpected (as-yet unidentified) primary electron donor. Transcriptional data added considerable interpretive value to this study, as (1) metagenomic data would not have highlighted these organisms, which had a disproportionately large role in community metabolism relative to their populations, and (2) co-expression of coupled pathway genes could not be predicted based solely on metagenomic data.

  7. [Biogeochemical processes of methane cycle in the soils, swamps and lakes of Western Siberia].

    PubMed

    Gal'chenko, V F; Dulov, L E; Cramer, B; Konova, N I; Barysheva, S V

    2001-01-01

    The biogeochemical processes of methane production and oxidation were studied in the upper horizons of tundra and taiga soils and of raised bogs and lake bottom sediments nearby the Tarkosalinsk gas field in western Siberia. Both in dry and water-logged soils, the total methane concentration (in soil particles and gaseous phase) was an order of magnitude higher than in the soil gaseous phase alone (22 and 1.1 nl/cm3, respectively). In bogs and lake bottom sediments, methane concentration was as high as 11 microliters/cm3. Acetate was the major precursor of the newly formed methane. The rate of aceticlastic methanogenesis reached 55 ng C/(cm3 day), whereas that of autotrophic methanogenesis was an order of magnitude lower. The most active methane production and oxidation were observed in bogs and lake sediments where the delta 13C values of CO2 were inversely related to the intensity of bacterial methane oxidation. Methane diffusing from bogs and lake bottom sediments showed delta 13C values ranging from -78 to -47@1000, whereas the delta 13C value of carbon dioxide ranged from -18 to -6@1000. In these ecosystems, methane emission comprised from 3 to 206 mg CH4/(m2 day). Conversely, the dry and water-logged soils of tundra and taiga took up atmospheric methane at a rate varying from 0.3 to 5.3 mg CH4/(m2 day). Methane consumption in soils was of biological rather than of adsorptive nature. This was confirmed by the radioisotopic method and chamber experiments, in which weighting of methane carbon was observed (the delta 13C value changed from -51 to -41@1000). PMID:11386054

  8. Linking sediment structure, hydrological functioning and biogeochemical cycling in disturbed coastal saltmarshes and implications for vegetation development

    NASA Astrophysics Data System (ADS)

    Spencer, Kate; Harvey, Gemma; James, Tempest; Simon, Carr; Michelle, Morris

    2014-05-01

    with preferential horizontal flows. The undisturbed saltmarsh displayed typical vertical geochemical sediment profiles. However, in the restored sites total Fe and Mn are elevated at depth indicating an absence of diagenetic cycling, whilst porewater sulphate and nitrate increased at depth suggesting that vertical solute transport is impeded in restored sites. In surface sediments, though total Hg concentrations are similar, Hg methylation rates are significantly higher than in the undisturbed saltmarsh suggesting that surface anoxia and poor drainage may result in increased mobilization and bioavailability of Hg. These findings have implications for the wider biogeochemical ecosystem services offered by saltmarsh restoration and the water-logged, anoxic conditions produced are unsuitable for seedling germination and plant growth. This highlights the need for integrated understanding of physical and biogeochemical processes.

  9. Biogeochemical cycling of manganese in Oneida Lake, New York: whole lake studies of manganese

    NASA Technical Reports Server (NTRS)

    Aguilar, C.; Nealson, K. H.

    1998-01-01

    Oneida Lake, New York is a eutrophic freshwater lake known for its abundant manganese nodules and a dynamic manganese cycle. Temporal and spatial distribution of soluble and particulate manganese in the water column of the lake were analyzed over a 3-year period and correlated with other variables such as oxygen, pH, and temperature. Only data from 1988 are shown. Manganese is removed from the water column in the spring via conversion to particulate form and deposited in the bottom sediments. This removal is due to biological factors, as the lake Eh/pH conditions alone can not account for the oxidation of the soluble manganese Mn(II). During the summer months the manganese from microbial reduction moves from the sediments to the water column. In periods of stratification the soluble Mn(II) builds up to concentrations of 20 micromoles or more in the bottom waters. When mixing occurs, the soluble Mn(II) is rapidly removed via oxidation. This cycle occurs more than once during the summer, with each manganese atom probably being used several times for the oxidation of organic carbon. At the end of the fall, whole lake concentrations of manganese stabilize, and remain at about 1 micromole until the following summer, when the cycle begins again. Inputs and outflows from the lake indicate that the active Mn cycle is primarily internal, with a small accumulation each year into ferromanganese nodules located in the oxic zones of the lake.

  10. Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin

    NASA Astrophysics Data System (ADS)

    Hagens, M.; Slomp, C. P.; Meysman, F. J. R.; Seitaj, D.; Harlay, J.; Borges, A. V.; Middelburg, J. J.

    2014-11-01

    Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity of the hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water column chemistry measurements were complemented with estimates of primary production and respiration using O2 light-dark incubations, in addition to sediment-water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting dataset was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air-sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment-water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid-base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid-base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.

  11. Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin

    NASA Astrophysics Data System (ADS)

    Hagens, M.; Slomp, C. P.; Meysman, F. J. R.; Seitaj, D.; Harlay, J.; Borges, A. V.; Middelburg, J. J.

    2015-03-01

    Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity in any hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water-column chemistry measurements were complemented with estimates of primary production and respiration using O2 light-dark incubations, in addition to sediment-water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting data set was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air-sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment-water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid-base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid-base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.

  12. The elemental composition of virus particles: implications for marine biogeochemical cycles.

    PubMed

    Jover, Luis F; Effler, T Chad; Buchan, Alison; Wilhelm, Steven W; Weitz, Joshua S

    2014-07-01

    In marine environments, virus-mediated lysis of host cells leads to the release of cellular carbon and nutrients and is hypothesized to be a major driver of carbon recycling on a global scale. However, efforts to characterize the effects of viruses on nutrient cycles have overlooked the geochemical potential of the virus particles themselves, particularly with respect to their phosphorus content. In this Analysis article, we use a biophysical scaling model of intact virus particles that has been validated using sequence and structural information to quantify differences in the elemental stoichiometry of marine viruses compared with their microbial hosts. By extrapolating particle-scale estimates to the ecosystem scale, we propose that, under certain circumstances, marine virus populations could make an important contribution to the reservoir and cycling of oceanic phosphorus.

  13. Investigating the organic carbon cycle and the anaerobic oxidation of methane in the Guaymas Basin: a biogeochemical approach

    NASA Astrophysics Data System (ADS)

    Cathalot, C.; Decker, C.; Caprais, J.; Ruffine, L.; Le Bruchec, J.; Olu, K.

    2013-12-01

    The Guaymas Basin is a pretty unique environment located in the Gulf of California and characterized by the emanation of fluids enriched in hydrocarbon, mainly methane, and sulfides. In this peculiar environment, both cold seeps and hydrothermal vents co-exist very closely, and are separated only by a few kilometers. In addition, highly productive surface waters and strong terrestrial inputs are responsible for strong sedimentation rates in this area. This special geological system allows for the development of various and complex macrofaunal and/or bacterial assemblages, based on chemosynthetic activity. These sea-bottom communities have been previously described [1,2] and several studies have demonstrated the occurrence of Anaerobic Oxidation of Methane (AOM) in the shallow sediment layers. Nevertheless, the quantification of the biogeochemical processes (e.g. rates, relative proportions) involved in both ecosystems in relation with the associated communities, and their role in the local organic carbon (OC) cycle is still lacking. Using a diagenetic modeling approach, this study aims at studying the OC production and recycling processes by describing the biogeochemical pathways and their associated rates in the ecosystems from the Guaymas Basin. Twelve stations presenting distinct biological assemblages (microbial mats, vesicomyids and bare sediment) were selected among both cold-seeps and hydrothermal vents sites from the Guaymas basin. A transport-reaction model including respiration, sulfate reduction, methanogenesis and AOM was developed and applied to each station. To constrain the model, at each station, cores were sampled using an ROV and the pore-waters extracted using Rhizon syringes. Pore-water concentrations of CH4, SO42-, Cl- and H2S were then measured. In addition, ex situ O2 microprofiles equipped with microsensors and in situ incubations using benthic chambers were performed to estimate the sediment uptake rates (O2, H2S, CH4). The overall dataset

  14. A role for scavenging in the marine biogeochemical cycling of zinc and zinc isotopes

    NASA Astrophysics Data System (ADS)

    John, Seth G.; Conway, Tim M.

    2014-05-01

    Zinc (Zn) and cadmium (Cd) are important biologically active trace-metals in the ocean. To date, the marine distributions of these elements have been understood primarily in terms of biological assimilation by growing phytoplankton and regeneration of sinking biological material. Initial studies of Zn and Cd concentrations and stable isotope ratios (δ66Zn and δ114Cd) have therefore focused on their use as simple tracers of assimilation and regeneration in the oceans. However, these two processes are insufficient to explain new data on the marine distribution of Zn and δ66Zn. Here, using the first high-resolution paired marine depth profiles of Zn, Cd, δ66Zn and δ114Cd, we suggest that scavenging of Zn onto organic matter plays a major, yet largely unconsidered, role in the marine cycling of Zn. This hypothesis is supported by culture experiments, which show that Zn released from degrading phytoplankton is rapidly scavenged back onto organic matter, and that adsorbed Zn is isotopically heavier than the dissolved phase by 0.58‰. In contrast, very little Cd or phosphate was scavenged and Cd isotopes were not significantly fractionated during degradation. Our hypothesis is further supported by one-dimensional modeling, which reproduces observed marine δ66Zn profiles with <1% of Zn adsorbed to particles. Understanding how Zn cycling in the oceans is a balance between assimilation, scavenging, and regeneration is necessary in order to investigate δ66Zn as a tracer of marine productivity. We anticipate that paired analyses of δ66Zn and δ114Cd will prove to be valuable new tools in constraining patterns of global primary productivity, providing key information for the marine carbon cycle during periods of past and present global climate change.

  15. Inorganic carbon cycling and biogeochemical processes in an Arctic inland sea (Hudson Bay)

    NASA Astrophysics Data System (ADS)

    Burt, William J.; Thomas, Helmuth; Miller, Lisa A.; Granskog, Mats A.; Papakyriakou, Tim N.; Pengelly, Leah

    2016-08-01

    The distributions of carbonate system parameters in Hudson Bay, which not only receives nearly one-third of Canada's river discharge but is also subject to annual cycles of sea-ice formation and melt, indicate that the timing and magnitude of freshwater inputs play an important role in carbon biogeochemistry and acidification in this unique Arctic ecosystem. This study uses basin-wide measurements of dissolved inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope tracers (δ18O and δ13CDIC), to provide a detailed assessment of carbon cycling processes within the bay. Surface distributions of carbonate parameters reveal the particular importance of freshwater inputs in the southern portion of the bay. Based on TA, we surmise that the deep waters in the Hudson Bay are largely of Pacific origin. Riverine TA end-members vary significantly both regionally and with small changes in near-surface depths, highlighting the importance of careful surface water sampling in highly stratified waters. In an along-shore transect, large increases in subsurface DIC are accompanied by equivalent decreases in δ13CDIC with no discernable change in TA, indicating a respiratory DIC production on the order of 100 µmol kg-1 DIC during deep water circulation around the bay.

  16. Evidence for global reorganisation of biogeochemical cycles at 2.73 Ma.

    NASA Astrophysics Data System (ADS)

    Reynolds, B. C.; Jaccard, S. L.; Frank, M.; Halliday, A. N.

    2006-12-01

    The abrupt cessation of high opaline accumulation marks the initiation of Northern Hemisphere Glaciation and the beginning of ice-rafted debris deposition in the Subarctic North Pacific at ~2.73 Ma. The decrease in opal flux has been linked to a decrease in the exposure of nutrient-rich deep water to the surface caused by an increased stratification of the water column within the subarctic gyre. The restricted supply should have led to more complete utilization of nutrients and silicate and a resulting increase in the δ15N and δ^{30}Si values in organic matter and diatoms deposited in the marine sediments. Whilst nitrogen isotopes from bulk sediments as well as diatom-bound nitrogen indeed documented a heavy isotope enrichment, there is an inverse correlation with silicon isotopes. This is best explained as a result of changes in the nutrient limiting conditions from high silicic acid utilization under nitrate replete conditions prior to 2.73 Ma to more nitrate depleted conditions and lower Si utilization thereafter. These changes imply a global reorganisation of the nutrient cycling within the global thermohaline circulation rather than a regional change in nutrient dynamics. A contemporaneous shift towards higher primary diatom productivity in the Southern Ocean led to enhanced nutrient storage in deep-waters and ultimately to a global cooling due to a diminished green-house effect. These changes pre-date the major intensification of Northern Hemisphere Glaciation observed in the North Atlantic at 2.5 Ma, but probably mark a switch across a global climatic threshold leading to Northern Hemisphere glacial cycles.

  17. Microbial Iron Oxidation in the Arctic Tundra and Its Implications for Biogeochemical Cycling

    PubMed Central

    Scott, Jarrod J.; Benes, Joshua; Bowden, William B.

    2015-01-01

    The role that neutrophilic iron-oxidizing bacteria play in the Arctic tundra is unknown. This study surveyed chemosynthetic iron-oxidizing communities at the North Slope of Alaska near Toolik Field Station (TFS) at Toolik Lake (lat 68.63, long −149.60). Microbial iron mats were common in submerged habitats with stationary or slowly flowing water, and their greatest areal extent is in coating plant stems and sediments in wet sedge meadows. Some Fe-oxidizing bacteria (FeOB) produce easily recognized sheath or stalk morphotypes that were present and dominant in all the mats we observed. The cool water temperatures (9 to 11°C) and reduced pH (5.0 to 6.6) at all sites kinetically favor microbial iron oxidation. A microbial survey of five sites based on 16S rRNA genes found a predominance of Proteobacteria, with Betaproteobacteria and members of the family Comamonadaceae being the most prevalent operational taxonomic units (OTUs). In relative abundance, clades of lithotrophic FeOB composed 5 to 10% of the communities. OTUs related to cyanobacteria and chloroplasts accounted for 3 to 25% of the communities. Oxygen profiles showed evidence for oxygenic photosynthesis at the surface of some mats, indicating the coexistence of photosynthetic and FeOB populations. The relative abundance of OTUs belonging to putative Fe-reducing bacteria (FeRB) averaged around 11% in the sampled iron mats. Mats incubated anaerobically with 10 mM acetate rapidly initiated Fe reduction, indicating that active iron cycling is likely. The prevalence of iron mats on the tundra might impact the carbon cycle through lithoautotrophic chemosynthesis, anaerobic respiration of organic carbon coupled to iron reduction, and the suppression of methanogenesis, and it potentially influences phosphorus dynamics through the adsorption of phosphorus to iron oxides. PMID:26386054

  18. Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling.

    PubMed

    Emerson, David; Scott, Jarrod J; Benes, Joshua; Bowden, William B

    2015-12-01

    The role that neutrophilic iron-oxidizing bacteria play in the Arctic tundra is unknown. This study surveyed chemosynthetic iron-oxidizing communities at the North Slope of Alaska near Toolik Field Station (TFS) at Toolik Lake (lat 68.63, long -149.60). Microbial iron mats were common in submerged habitats with stationary or slowly flowing water, and their greatest areal extent is in coating plant stems and sediments in wet sedge meadows. Some Fe-oxidizing bacteria (FeOB) produce easily recognized sheath or stalk morphotypes that were present and dominant in all the mats we observed. The cool water temperatures (9 to 11°C) and reduced pH (5.0 to 6.6) at all sites kinetically favor microbial iron oxidation. A microbial survey of five sites based on 16S rRNA genes found a predominance of Proteobacteria, with Betaproteobacteria and members of the family Comamonadaceae being the most prevalent operational taxonomic units (OTUs). In relative abundance, clades of lithotrophic FeOB composed 5 to 10% of the communities. OTUs related to cyanobacteria and chloroplasts accounted for 3 to 25% of the communities. Oxygen profiles showed evidence for oxygenic photosynthesis at the surface of some mats, indicating the coexistence of photosynthetic and FeOB populations. The relative abundance of OTUs belonging to putative Fe-reducing bacteria (FeRB) averaged around 11% in the sampled iron mats. Mats incubated anaerobically with 10 mM acetate rapidly initiated Fe reduction, indicating that active iron cycling is likely. The prevalence of iron mats on the tundra might impact the carbon cycle through lithoautotrophic chemosynthesis, anaerobic respiration of organic carbon coupled to iron reduction, and the suppression of methanogenesis, and it potentially influences phosphorus dynamics through the adsorption of phosphorus to iron oxides.

  19. Bacteria diversity, distribution and insight into their role in S and Fe biogeochemical cycling during black shale weathering.

    PubMed

    Li, Jiwei; Sun, Weimin; Wang, Shiming; Sun, Zhilei; Lin, Sixiang; Peng, Xiaotong

    2014-11-01

    A group of black shale samples, which were collected sequentially along a continuous depositional unit from bottom fresh zone toward the surface regolith of the weathering profile at Chengkou County, Southwest China, were examined using mineralogical, geochemical and pyrosequencing techniques. The mineralogical and geochemical analyses indicated that the black shale profile provided a series of extremely acidic and chemical species that changed microbial habitats following the process of weathering. This finding is in contrast with a previous hypothesis that a low-diversity bacterial community existed in these harsh environments; the pyrosequencing analyses showed extremely diverse microbial communities with 33 different phyla/groups in these samples. Among these phyla/groups, proteobacteria, actinobacteria and firmcutes were more dominant than other phyla, and the phylogenetic structures of the bacterial communities vary with the progressive process of weathering. Moreover, the canonical-correlation analysis suggested that pH and sulfur in sulfate, followed by total Fe and sulfur in pyrite, are the significant factors that shape the microbial community structure. In addition, a large proportion of S- and Fe-related bacteria, such as Acidithiobacillus, Sulfobacillus, Thiobacillus, Ferrimicrobium and Ferrithrix, may be responsible for pyrite bio-oxidation, as well as for S and Fe biogeochemical cycling, in the black shale weathering environments.

  20. Isolation and characterization of an NAD+-degrading bacterium PTX1 and its role in chromium biogeochemical cycle

    SciTech Connect

    Puzon, Geoffrey J.; Huang, Yan C.; Dohnalkova, Alice; Xun, Luying

    2008-06-01

    Microorganisms can reduce toxic chromate to less toxic trivalent chromium [Cr(III)]. Besides Cr(OH)3 precipitates, some soluble organo-Cr(III) complexes are readily formed upon microbial, enzymatic, and chemical reduction of chromate. However, the biotransformation of the organo-Cr(III) complexes has not been characterized. We have previously reported the formation of a nicotinamide adenine dinucleotide (NAD+)-Cr(III) complex after enzymatic reduction of chromate. Although the NAD+-Cr(III) complex was stable under sterile conditions, microbial cells were identified as precipitates in a non-sterile NAD+-Cr(III) solution after extended incubation. The most dominant bacterium PTX1 was isolated and assigned to Leifsonia genus by phylogenetic analysis of 16S rRNA gene sequence. PTX1 grew slowly on NAD+ with a doubling time of 17 h, and even more slowly on the NAD+-Cr(III) complex with an estimated doubling time of 35 days. The slow growth suggests that PTX1 passively grew on trace NAD+ dissociated from the NAD+-Cr(III) complex, facilitating further dissociation of the complex and formation of Cr(III) precipitates. Thus, organo-Cr(III) complexes might be an intrinsic link of the chromium biogeochemical cycle; they can be produced during chromate reduction and then further mineralized by microorganisms.

  1. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    Dubinina, G A; Sorokina, A Iu

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation.

  2. Parameterizing soil emission and atmospheric oxidation-reduction in a model of the global biogeochemical cycle of mercury.

    PubMed

    Kikuchi, Tetsuro; Ikemoto, Hisatoshi; Takahashi, Katsuyuki; Hasome, Hisashi; Ueda, Hiromasa

    2013-01-01

    Using the GEOS-Chem atmosphere-land-ocean coupled mercury model, we studied the significances of two processes, soil emission and atmospheric oxidation-reduction, in the global biogeochemical cycling of mercury and their parametrization to improve model performance. Implementing an empirical equation for soil emission flux (Esoil) including soil mercury concentration, solar radiation, and surface air temperature as parameters enabled the model to reproduce the observed seasonal variations of Esoil, whereas the default setting, which uses only the former two parameters, failed. The modified setting of Esoil also increased the model-simulated atmospheric concentration in the summertime surface layer of the lower- and midlatitudes and improved the model reproducibility for the observations in Japan and U.S. in the same period. Implementing oxidation of atmospheric gaseous elemental mercury (Hg(0)) by ozone with an updated rate constant, as well as the oxidation by bromine atoms (Br) in the default setting, improved the model reproducibility for the dry deposition fluxes observed in Japan. This setting, however, failed to reproduce the observed seasonal variations of atmospheric concentrations in the Arctic sites due to the imbalance between oxidation and reduction, whereas the model with Br as the sole Hg(0) oxidant in the polar atmosphere could capture the variations.

  3. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation. PMID:25507440

  4. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    Dubinina, G A; Sorokina, A Iu

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation. PMID:25423717

  5. Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle.

    PubMed

    Denger, Karin; Weiss, Michael; Felux, Ann-Katrin; Schneider, Alexander; Mayer, Christoph; Spiteller, Dieter; Huhn, Thomas; Cook, Alasdair M; Schleheck, David

    2014-03-01

    Sulphoquinovose (SQ, 6-deoxy-6-sulphoglucose) has been known for 50 years as the polar headgroup of the plant sulpholipid in the photosynthetic membranes of all higher plants, mosses, ferns, algae and most photosynthetic bacteria. It is also found in some non-photosynthetic bacteria, and SQ is part of the surface layer of some Archaea. The estimated annual production of SQ is 10,000,000,000 tonnes (10 petagrams), thus it comprises a major portion of the organo-sulphur in nature, where SQ is degraded by bacteria. However, despite evidence for at least three different degradative pathways in bacteria, no enzymic reaction or gene in any pathway has been defined, although a sulphoglycolytic pathway has been proposed. Here we show that Escherichia coli K-12, the most widely studied prokaryotic model organism, performs sulphoglycolysis, in addition to standard glycolysis. SQ is catabolised through four newly discovered reactions that we established using purified, heterologously expressed enzymes: SQ isomerase, 6-deoxy-6-sulphofructose (SF) kinase, 6-deoxy-6-sulphofructose-1-phosphate (SFP) aldolase, and 3-sulpholactaldehyde (SLA) reductase. The enzymes are encoded in a ten-gene cluster, which probably also encodes regulation, transport and degradation of the whole sulpholipid; the gene cluster is present in almost all (>91%) available E. coli genomes, and is widespread in Enterobacteriaceae. The pathway yields dihydroxyacetone phosphate (DHAP), which powers energy conservation and growth of E. coli, and the sulphonate product 2,3-dihydroxypropane-1-sulphonate (DHPS), which is excreted. DHPS is mineralized by other bacteria, thus closing the sulphur cycle within a bacterial community.

  6. Biogeochemical cycles during the species succession from Skeletonema costatum to Alexandrium tamarense in northern Hiroshima Bay

    NASA Astrophysics Data System (ADS)

    Yamamoto, Tamiji; Inokuchi, Yuko; Sugiyama, Teiji

    2004-12-01

    Temporal variations, budgets and cycling patterns of major biophilic elements [phosphorus (P), nitrogen (N) and silicon (Si)] in northern Hiroshima Bay during species succession from Skeletonema costatum to Alexandrium tamarense were documented using data collected on a weekly basis in 1996 and 1997. The budget calculations using a box model were made from the perspective of both particulate formation and decomposition of particulate matter. Thus, the overall circulation patterns of these three elements and their differences were examined in the present study. The turnover time of P was longer than that of N, indicating that the utilization efficiency of P by organisms is low. Along with this, absolute concentrations of dissolved inorganic phosphorus in this season and elemental ratios calculated from various forms of biophilic elements support the idea that DIP is too low for phytoplankton to utilize it. However, the utilization efficiency of P was higher in 1997 than in 1996, when A. tamarense formed a more intensive bloom, suggesting that these organisms could retain elements. When the bloom of A. tamarense formed in 1997, the residence time of water was extremely long, indicating that stagnation of water is a primary factor for bloom formation. In contrast to the large fluctuation in the residence time of water, residence times of biophilic elements were almost constant, indicating the importance of biological processes occurring in the system. On the other hand, in 1996, the residence times of biophilic elements were usually longer compared to that of water. This suggests that the particulate formation process by phytoplankton acts as a "nutrient trap" in combination with estuarine circulation.

  7. Biogeochemical cycling of arsenic in coastal salinized aquifers: Evidence from sulfur isotope study.

    PubMed

    Kao, Yu-Hsuan; Wang, Sheng-Wei; Liu, Chen-Wuing; Wang, Pei-Ling; Wang, Chung-Ho; Maji, Sanjoy Kumar

    2011-10-15

    Arsenic (As) contamination of groundwater, accompanied by critical salinization, occurs in the southwestern coastal area of Taiwan. Statistical analyses and geochemical calculations indicate that a possible source of aqueous arsenic is the reductive dissolution of As-bearing iron oxyhydroxides. There are few reports of the influence of sulfate-sulfide redox cycling on arsenic mobility in brackish groundwater. We evaluated the contribution of sulfate reduction and sulfide re-oxidation on As enrichment using δ(34)S([SO(4)]) and δ(18)O([SO(4)]) sulfur isotopic analyses of groundwater. Fifty-three groundwater samples were divided into groups of high-As content and salinized (Type A), low-As and non-salinized (Type B), and high-As and non-salinized (Type C) groundwaters, based on hydro-geochemical analysis. The relatively high enrichment of (34)S([SO(4)]) and (18)O([SO(4)]) present in Type A, caused by microbial-mediated reduction of sulfate, and high (18)O enrichment factor (ε([SO(4)-H(2)O])), suggests that sulfur disproportionation is an important process during the reductive dissolution of As-containing iron oxyhydroxides. Limited co-precipitation of ion-sulfide increased the rate of As liberation under anaerobic conditions. In contrast to this, Type B and Type C groundwater samples showed high δ(18)O([SO(4)]) and low δ(34)S([SO(4)]) values under mildly reducing conditions. Base on (18)O mass balance calculations, the oxide sources of sulfate are from infiltrated atmospheric O(2), caused by additional recharge of dissolved oxygen and sulfide re-oxidation. The anthropogenic influence of extensive pumping also promotes atmospheric oxygen entry into aquifers, altering redox conditions, and increasing the rate of As release into groundwater.

  8. "Anticlumping" and Other Combinatorial Effects on Clumped Isotopes: Implications for Tracing Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Yeung, L.

    2015-12-01

    I present a mode of isotopic ordering that has purely combinatorial origins. It can be important when identical rare isotopes are paired by coincidence (e.g., they are neighbors on the same molecule), or when extrinsic factors govern the isotopic composition of the two atoms that share a chemical bond. By itself, combinatorial isotope pairing yields products with isotopes either randomly distributed or with a deficit relative to a random distribution of isotopes. These systematics arise because of an unconventional coupling between the formation of singly- and multiply-substituted isotopic moieties. In a random distribution, rare isotopes are symmetrically distributed: Single isotopic substitutions (e.g., H‒D and D‒H in H2) occur with equal probability, and double isotopic substitutions (e.g., D2) occur according to random chance. The absence of symmetry in a bond-making complex can yield unequal numbers of singly-substituted molecules (e.g., more H‒D than D‒H in H2), which is recorded in the product molecule as a deficit in doubly-substituted moieties and an "anticlumped" isotope distribution (i.e., Δn < 0). Enzymatic isotope pairing reactions, which can have site-specific isotopic fractionation factors and atom reservoirs, should express this class of combinatorial isotope effect. Chemical-kinetic isotope effects, which are related to the bond-forming transition state, arise independently and express second-order combinatorial effects. In general, both combinatorial and chemical factors are important for calculating and interpreting clumped-isotope signatures of individual reactions. In many reactions relevant to geochemical oxygen, carbon, and nitrogen cycling, combinatorial isotope pairing likely plays a strong role in the clumped isotope distribution of the products. These isotopic signatures, manifest as either directly bound isotope clumps or as features of a molecule's isotopic anatomy, could be exploited as tracers of biogeochemistry that can

  9. Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean

    PubMed Central

    Shiozaki, Takuhei; Ijichi, Minoru; Isobe, Kazuo; Hashihama, Fuminori; Nakamura, Ken-ichi; Ehama, Makoto; Hayashizaki, Ken-ichi; Takahashi, Kazutaka; Hamasaki, Koji; Furuya, Ken

    2016-01-01

    We examined nitrification in the euphotic zone, its impact on the nitrogen cycles, and the controlling factors along a 7500 km transect from the equatorial Pacific Ocean to the Arctic Ocean. Ammonia oxidation occurred in the euphotic zone at most of the stations. The gene and transcript abundances for ammonia oxidation indicated that the shallow clade archaea were the major ammonia oxidizers throughout the study regions. Ammonia oxidation accounted for up to 87.4% (average 55.6%) of the rate of nitrate assimilation in the subtropical oligotrophic region. However, in the shallow Bering and Chukchi sea shelves (bottom ⩽67 m), the percentage was small (0–4.74%) because ammonia oxidation and the abundance of ammonia oxidizers were low, the light environment being one possible explanation for the low activity. With the exception of the shallow bottom stations, depth-integrated ammonia oxidation was positively correlated with depth-integrated primary production. Ammonia oxidation was low in the high-nutrient low-chlorophyll subarctic region and high in the Bering Sea Green Belt, and primary production in both was influenced by micronutrient supply. An ammonium kinetics experiment demonstrated that ammonia oxidation did not increase significantly with the addition of 31–1560 nm ammonium at most stations except in the Bering Sea Green Belt. Thus, the relationship between ammonia oxidation and primary production does not simply indicate that ammonia oxidation increased with ammonium supply through decomposition of organic matter produced by primary production but that ammonia oxidation might also be controlled by micronutrient availability as with primary production. PMID:26918664

  10. Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean.

    PubMed

    Shiozaki, Takuhei; Ijichi, Minoru; Isobe, Kazuo; Hashihama, Fuminori; Nakamura, Ken-Ichi; Ehama, Makoto; Hayashizaki, Ken-Ichi; Takahashi, Kazutaka; Hamasaki, Koji; Furuya, Ken

    2016-09-01

    We examined nitrification in the euphotic zone, its impact on the nitrogen cycles, and the controlling factors along a 7500 km transect from the equatorial Pacific Ocean to the Arctic Ocean. Ammonia oxidation occurred in the euphotic zone at most of the stations. The gene and transcript abundances for ammonia oxidation indicated that the shallow clade archaea were the major ammonia oxidizers throughout the study regions. Ammonia oxidation accounted for up to 87.4% (average 55.6%) of the rate of nitrate assimilation in the subtropical oligotrophic region. However, in the shallow Bering and Chukchi sea shelves (bottom ⩽67 m), the percentage was small (0-4.74%) because ammonia oxidation and the abundance of ammonia oxidizers were low, the light environment being one possible explanation for the low activity. With the exception of the shallow bottom stations, depth-integrated ammonia oxidation was positively correlated with depth-integrated primary production. Ammonia oxidation was low in the high-nutrient low-chlorophyll subarctic region and high in the Bering Sea Green Belt, and primary production in both was influenced by micronutrient supply. An ammonium kinetics experiment demonstrated that ammonia oxidation did not increase significantly with the addition of 31-1560 nm ammonium at most stations except in the Bering Sea Green Belt. Thus, the relationship between ammonia oxidation and primary production does not simply indicate that ammonia oxidation increased with ammonium supply through decomposition of organic matter produced by primary production but that ammonia oxidation might also be controlled by micronutrient availability as with primary production. PMID:26918664

  11. [Biogeochemical cycles in natural forest and conifer plantations in the high mountains of Colombia].

    PubMed

    León, Juan Diego; González, María Isabel; Gallardo, Juan Fernando

    2011-12-01

    Plant litter production and decomposition are two important processes in forest ecosystems, since they provide the main organic matter input to soil and regulate nutrient cycling. With the aim to study these processes, litterfall, standing litter and nutrient return were studied for three years in an oak forest (Quercus humboldtii), pine (Pinus patula) and cypress (Cupressus lusitanica) plantations, located in highlands of the Central Cordillera of Colombia. Evaluation methods included: fine litter collection at fortnightly intervals using litter traps; the litter layer samples at the end of each sampling year and chemical analyses of both litterfall and standing litter. Fine litter fall observed was similar in oak forest (7.5 Mg ha/y) and in pine (7.8 Mg ha/y), but very low in cypress (3.5 Mg ha/y). Litter standing was 1.76, 1.73 and 1.3 Mg ha/y in oak, pine and cypress, respectively. The mean residence time of the standing litter was of 3.3 years for cypress, 2.1 years for pine and 1.8 years for oak forests. In contrast, the total amount of retained elements (N, P, S, Ca, Mg, K, Cu, Fe, Mn and Zn) in the standing litter was higher in pine (115 kg/ha), followed by oak (78 kg/ha) and cypress (24 kg/ha). Oak forests showed the lowest mean residence time of nutrients and the highest nutrients return to the soil as a consequence of a faster decomposition. Thus, a higher nutrient supply to soils from oaks than from tree plantations, seems to be an ecological advantage for recovering and maintaining the main ecosystem functioning features, which needs to be taken into account in restoration programs in this highly degraded Andean mountains.

  12. Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean.

    PubMed

    Shiozaki, Takuhei; Ijichi, Minoru; Isobe, Kazuo; Hashihama, Fuminori; Nakamura, Ken-Ichi; Ehama, Makoto; Hayashizaki, Ken-Ichi; Takahashi, Kazutaka; Hamasaki, Koji; Furuya, Ken

    2016-09-01

    We examined nitrification in the euphotic zone, its impact on the nitrogen cycles, and the controlling factors along a 7500 km transect from the equatorial Pacific Ocean to the Arctic Ocean. Ammonia oxidation occurred in the euphotic zone at most of the stations. The gene and transcript abundances for ammonia oxidation indicated that the shallow clade archaea were the major ammonia oxidizers throughout the study regions. Ammonia oxidation accounted for up to 87.4% (average 55.6%) of the rate of nitrate assimilation in the subtropical oligotrophic region. However, in the shallow Bering and Chukchi sea shelves (bottom ⩽67 m), the percentage was small (0-4.74%) because ammonia oxidation and the abundance of ammonia oxidizers were low, the light environment being one possible explanation for the low activity. With the exception of the shallow bottom stations, depth-integrated ammonia oxidation was positively correlated with depth-integrated primary production. Ammonia oxidation was low in the high-nutrient low-chlorophyll subarctic region and high in the Bering Sea Green Belt, and primary production in both was influenced by micronutrient supply. An ammonium kinetics experiment demonstrated that ammonia oxidation did not increase significantly with the addition of 31-1560 nm ammonium at most stations except in the Bering Sea Green Belt. Thus, the relationship between ammonia oxidation and primary production does not simply indicate that ammonia oxidation increased with ammonium supply through decomposition of organic matter produced by primary production but that ammonia oxidation might also be controlled by micronutrient availability as with primary production.

  13. Separating biogeochemical cycling of neodymium from water mass mixing in the Eastern North Atlantic

    NASA Astrophysics Data System (ADS)

    Stichel, Torben; Hartman, Alison E.; Duggan, Brian; Goldstein, Steven L.; Scher, Howie; Pahnke, Katharina

    2015-02-01

    The radiogenic neodymium (Nd) isotope ratio 143Nd/144Nd (expressed in εNd) is being used as a tracer in paleo and modern ocean circulation. However, the mechanisms controlling input, distribution, and internal cycling are far from understood. For example, globally, Nd concentration ([Nd]) commonly follows patterns of nutrient tracers, generally increasing with depth below the thermocline, while εNd, tends to reflect the water masses, which has often been referred to as the 'Nd-paradox'. Here we present dissolved Nd isotopes and concentrations at unprecedented vertical and spatial resolution from the eastern part of the US GEOTRACES North Atlantic Zonal Transect (Gulf of Cadiz - Mauritanian Shelf - Cape Verde Islands). The [Nd] of all samples ranges from 12.3 to 36.7 pmol/kg, with lowest [Nd] usually found within the layer of highest chlorophyll-a levels (chl-max), suggesting removal through scavenging. The Nd isotope compositions range between εNd = - 13.4 and -9.9, with lower values at the surface within the extension of the Saharan dust plume and a benthic nepheloid layer (BNL). Less negative values are found in oligotrophic surface waters, Mediterranean Outflow Water (MOW), and near the Cape Verde Islands. Overall, water mass mixing derived from εNd is best visible at the Strait of Gibraltar, where MOW enters the Atlantic Ocean. Most of the sub-thermocline εNd varies within a small range with poor water mass distinction due to the dominance of North Atlantic Deep Water. High surface [Nd] associated with more negative εNd is interpreted to be the result of dust deposition and dissolution. Local [Nd] maxima with no apparent change in εNd compared to ambient seawater, observed within a zone of minimum oxygen concentration (OMZ) at ∼500 m depth off Mauritania, suggest minor input of lithogenic Nd but a rather high contribution through desorption of previously scavenged Nd. That is, Saharan dust in this area has only a minor influence on the isotope

  14. Development of advanced process-based model towards evaluation of boundless biogeochemical cycles in terrestrial-aquatic continuum

    NASA Astrophysics Data System (ADS)

    Nakayama, Tadanobu; Maksyutov, Shamil

    2014-05-01

    Recent research shows inland water may play some role in continental biogeochemical cycling though its contribution has remained uncertain due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local, regional and global scales, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes. In this study, NICE was extended to evaluate global hydrologic cycle by using various global datasets. The simulated result agreed reasonably with that in the previous research (Fan et al., 2013) and extended to clarify further eco-hydrological process in global scale. Then, NICE was further developed to incorporate the biogeochemical cycle including the reaction between inorganic and organic carbons (DOC, POC, DIC, pCO2, etc.) in the biosphere (terrestrial and aquatic ecosystems including surface water and groundwater). The model simulated the carbon cycle, for example, CO2 evasion from inland water in global scale, which is relatively in good agreement in that estimated by empirical relation using the previous pCO2 data (Aufdenkampe et al., 2011; Global River Chemistry Database, 2013). This simulation system would play important role in identification of full greenhouse gas balance of the biosphere and spatio-temporal hot spots in boundless biogeochemical cycle (Cole et al. 2007; Frei et al. 2012). References; Aufdenkampe, A.K., et al., Front. Ecol. Environ., doi:10.1890/100014, 2011. Battin, T.J., et al., Nat. Geosci., 2, 598-600, 2009. Cole, J.J. et al., Ecosystems, doi:10.1007/s10021-006-9013-8, 2007. Fan, Y. et al

  15. Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts.

    PubMed

    Mason, Olivia U; Di Meo-Savoie, Carol A; Van Nostrand, Joy D; Zhou, Jizhong; Fisk, Martin R; Giovannoni, Stephen J

    2009-02-01

    We used molecular techniques to analyze basalts of varying ages that were collected from the East Pacific Rise, 9 degrees N, from the rift axis of the Juan de Fuca Ridge and from neighboring seamounts. Cluster analysis of 16S rDNA terminal restriction fragment polymorphism data revealed that basalt endoliths are distinct from seawater and that communities clustered, to some degree, based on the age of the host rock. This age-based clustering suggests that alteration processes may affect community structure. Cloning and sequencing of bacterial and archaeal 16S rRNA genes revealed 12 different phyla and subphyla associated with basalts. These include the Gemmatimonadetes, Nitrospirae, the candidate phylum SBR1093 in the bacteria, and in the Archaea Marine Benthic Group B, none of which have been previously reported in basalts. We delineated novel ocean crust clades in the gamma-Proteobacteria, Planctomycetes and Actinobacteria that are composed entirely of basalt-associated microflora, and may represent basalt ecotypes. Finally, microarray analysis of functional genes in basalt revealed that genes coding for previously unreported processes such as carbon fixation, methane oxidation, methanogenesis and nitrogen fixation are present, suggesting that basalts harbor previously unrecognized metabolic diversity. These novel processes could exert a profound influence on ocean chemistry. PMID:18843298

  16. Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts.

    PubMed

    Mason, Olivia U; Di Meo-Savoie, Carol A; Van Nostrand, Joy D; Zhou, Jizhong; Fisk, Martin R; Giovannoni, Stephen J

    2009-02-01

    We used molecular techniques to analyze basalts of varying ages that were collected from the East Pacific Rise, 9 degrees N, from the rift axis of the Juan de Fuca Ridge and from neighboring seamounts. Cluster analysis of 16S rDNA terminal restriction fragment polymorphism data revealed that basalt endoliths are distinct from seawater and that communities clustered, to some degree, based on the age of the host rock. This age-based clustering suggests that alteration processes may affect community structure. Cloning and sequencing of bacterial and archaeal 16S rRNA genes revealed 12 different phyla and subphyla associated with basalts. These include the Gemmatimonadetes, Nitrospirae, the candidate phylum SBR1093 in the bacteria, and in the Archaea Marine Benthic Group B, none of which have been previously reported in basalts. We delineated novel ocean crust clades in the gamma-Proteobacteria, Planctomycetes and Actinobacteria that are composed entirely of basalt-associated microflora, and may represent basalt ecotypes. Finally, microarray analysis of functional genes in basalt revealed that genes coding for previously unreported processes such as carbon fixation, methane oxidation, methanogenesis and nitrogen fixation are present, suggesting that basalts harbor previously unrecognized metabolic diversity. These novel processes could exert a profound influence on ocean chemistry.

  17. Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts

    SciTech Connect

    Mason, Olivia U.; Di Meo-Savoie, Carol A.; Van Nostrand, Joy D.; Zhou, Jizhong; Fisk, Martin R.; Giovannoni, Stephen J.

    2008-09-30

    We used molecular techniques to analyze basalts of varying ages that were collected from the East Pacific Rise, 9 oN, from the rift axis of the Juan de Fuca Ridge, and from neighboring seamounts. Cluster analysis of 16S rDNA Terminal Restriction Fragment Polymorphism data revealed that basalt endoliths are distinct from seawater and that communities clustered, to some degree, based on the age of the host rock. This age-based clustering suggests that alteration processes may affect community structure. Cloning and sequencing of bacterial and archaeal 16S rRNA genes revealed twelve different phyla and sub-phyla associated with basalts. These include the Gemmatimonadetes, Nitrospirae, the candidate phylum SBR1093 in the c, andin the Archaea Marine Benthic Group B, none of which have been previously reported in basalts. We delineated novel ocean crust clades in the gamma-Proteobacteria, Planctomycetes, and Actinobacteria that are composed entirely of basalt associated microflora, and may represent basalt ecotypes. Finally, microarray analysis of functional genes in basalt revealed that genes coding for previously unreported processes such as carbon fixation, methane-oxidation, methanogenesis, and nitrogen fixation are present, suggesting that basalts harbor previously unrecognized metabolic diversity. These novel processes could exert a profound influence on ocean chemistry.

  18. Sulfur isotopic analysis of carbonyl sulfide and its application for biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Hattori, Shohei; Kamezaki, Kazuki; Ogawa, Takahiro; Toyoda, Sakae; Katayama, Yoko; Yoshida, Naohiro

    2016-04-01

    Carbonyl sulfide (OCS or COS) is the most abundant gas containing sulfur in the atmosphere, with an average mixing ratio of 500 p.p.t.v. in the troposphere. OCS is suggested as a sulfur source of the stratospheric sulfate aerosols (SSA) which plays an important role in Earth's radiation budget and ozone depletion. Therefore, OCS budget should be validated for prediction of climate change, but the global OCS budget is imbalance. Recently we developed a promising new analytical method for measuring the stable sulfur isotopic compositions of OCS using nanomole level samples: the direct isotopic analytical technique of on-line gas chromatography-isotope ratio mass spectrometry (GC-IRMS) using fragmentation ions S+ (Hattori et al., 2015). The first measurement of the δ34S value for atmospheric OCS coupled with isotopic fractionation for OCS sink reactions in the stratosphere (Hattori et al., 2011; Schmidt et al., 2012; Hattori et al., 2012) explains the reported δ34S value for background stratospheric sulfate, suggesting that OCS is a potentially important source for background (nonepisodic or nonvolcanic) stratospheric sulfate aerosols. This new method measuring δ34S values of OCS can be used to investigate OCS sources and sinks in the troposphere to better understand its cycle. It is known that some microorganisms in soil can degrade OCS, but the mechanism and the contribution to the OCS in the air are still uncertain. In order to determine sulfur isotopic enrichment factor of OCS during degradation via microorganisms, incubation experiments were conducted using strains belonging to the genera Mycobacterium, Williamsia and Cupriavidus, isolated from natural soil environments (Kato et al., 2008). As a result, sulfur isotope ratios of OCS were increased during degradation of OCS, indicating that reaction for OC32S is faster than that for OC33S and OC34S. OCS degradation via microorganisms is not mass-independent fractionation (MIF) process, suggesting that this

  19. The Paradox of Excess Nitrogen in Boreal Peatlands: Biogeochemical Gaps in Nitrogen Cycling Revealed

    NASA Astrophysics Data System (ADS)

    Vile, M. A.; Prsa, T.; Wieder, R.; Lamers, L. P.

    2011-12-01

    Globally, peatlands cover 3-4 % of the Earth's land surface (over 4 million km 2, yet they store 25-30 % of the world's soil carbon (C) and 9-16% of the world's soil nitrogen (N, 8-15 Pg) in peat. As in other terrestrial ecosystems, the cycling of C and N is closely linked, especially for ombrotrophic bogs. Bogs receive nutrient and water exclusively from the atmosphere, which ensures an N-limited, nutrient-poor habitat. In Alberta, NW Canada, peatlands have received exceptionally low atmospheric inputs of N (< 1 7 kg/ha/yr) from their first introduction on the landscape ~ 7000 yrs bp, up to the present time. Paradoxically, despite these low inputs of atmospheric N deposition, bases on 210-fixation Pb dating of peat cores, we have shown that over the past 50 years these bogs have accumulated approximately 11-21 times more N in peat than can be explained by inputs of atmospheric N. A likely missing input is N2-fixation from cyanobacteria associated with Sphagnum mosses, however this process has been largely overlooked in boreal peatlands. Here we demonstrate the importance of N2-fixation in explaining the high accumulation rates of N found in unpolluted, boreal bogs of western Canada. Calibrated (using theoretical ratio of 1.5-3:1) rates of N2-fixation for 4 bogs in northern Alberta ranged from 1.6 to 8.0 ± 0.7 kg/ha/yr, indicating that 42-58 % of the N accumulated over in peat, can be attributed to biological N2-fixation. Although most of northern Alberta's peatlands continue to receive exceptionally low atmospheric N deposition rates, over the last 3 decades, rapid development and industrial expansion of Alberta's Oil Sands Mining (OSM) potentially threaten the pristine nature of peatlands through regionally elevated deposition of N-compounds (NOx). Prior to OSM, N inputs to bogs were limited exclusively to (1) biological N fixation, and (2) bulk background deposition. We examined the response of peatlands located in the OSM area to enhanced N deposition. Despite

  20. Water-table height and microtopography control biogeochemical cycling in an Arctic coastal tundra ecosystem

    NASA Astrophysics Data System (ADS)

    Lipson, D. A.; Zona, D.; Raab, T. K.; Bozzolo, F.; Mauritz, M.; Oechel, W. C.

    2012-01-01

    production only responded to flooding in high elevation areas. Seasonal changes in the oxidation state of solid phase Fe minerals showed that net Fe reduction occurred, especially in topographically low areas. The effects of Fe reduction were also seen in the topographic patterns of pH, as protons were consumed where this process was prevalent. This suite of results can all be attributed to the effect of water table on oxygen availability: flooded conditions promote anoxia, stimulating dissolution and reduction of Fe(III), and to some extent, methanogenesis. However, two lines of evidence indicated the inhibition of methanogenesis by alternative e- acceptors such as Fe(III) and humic substances: (1) ratios of CO2:CH4 evolved from anaerobic soil incubations and dissolved in soil pore water were high; (2) CH4 concentrations were negatively correlated with the oxidation state of the soluble Fe pool in both topographically high and low areas. A second set of results could be explained by increased soil temperature in the flooding treatment, which presumably arose from the increased thermal conductivity of the soil surface: higher N mineralization rates and dissolved P concentrations were observed in flooded areas. Overall, these results could have implications for C and nutrient cycling in high Arctic areas where warming and flooding are likely consequences of climate change.

  1. Sedimentary organic matter distributions, burrowing activity, and biogeochemical cycling: Natural patterns and experimental artifacts

    NASA Astrophysics Data System (ADS)

    Michaud, Emma; Aller, Robert, C.; Stora, Georges

    2010-11-01

    The coupling between biogenic reworking activity and reactive organic matter patterns within deposits is poorly understood and often ignored. In this study, we examined how common experimental treatments of sediment affect the burrowing behavior of the polychaete Nephtys incisa and how these effects may interact with reactive organic matter distributions to alter diagenetic transport - reaction balances. Sediment and animals were recovered from a subtidal site in central Long Island Sound, USA. The upper 15 cm of the sediment was sectioned into sub-intervals, and each interval separately sieved and homogenized. Three initial distributions of sediment and organic substrate reactivity were setup in a series of microcosms: (1) a reconstituted natural pattern with surface-derived sediment overlying sediment obtained from progressively deeper material to a depth of 15 cm (Natural); (2) a 15 cm thick sediment layer composed only of surface-derived sediment (Rich); and (3) a 15 cm thick layer composed of uniformally mixed sediment from the original 15 cm sediment profile (Averaged). The two last treatments are comparable to that used in microcosms in many previous studies of bioturbation and interspecific functional interaction experiments. Sediment grain size distributions were 97.5% silt-clay and showed no depth dependent patterns. Sediment porosity gradients were slightly altered by the treatments. Nepthys were reintroduced and aquariums were X-rayed regularly over 5 months to visualize and quantify spatial and temporal dynamics of burrows. The burrowing behaviour of adult populations having similar total biovolume, biomass, abundance, and individual sizes differed substantially as a function of treatment. Burrows in sediment with natural property gradients were much shallower and less dense than those in microcosms with altered gradients. The burrow volume/biovolume ratio was also lower in the substrate with natural organic reactivity gradients. Variation in food

  2. Enhanced dissolution of basaltic glass in brackish waters: Impact on biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Morin, Guillaume P.; Vigier, Nathalie; Verney-Carron, Aurélie

    2015-05-01

    In order to better constrain the geochemical budget of Si in the ocean, and potentially other elements released by the dissolution of silicates, the alteration of riverine particulate material in estuaries and seawater needs to be estimated. For this, a series of alteration experiments of basaltic glass were performed at various degrees of salinity (from 0 to 3.5 g L-1) in far-from-equilibrium conditions. The solution used is a filtered natural seawater standard from the Atlantic Ocean. The forward dissolution rates increase from 2.1 ṡ10-7 molSim-2s-1 (S = 0 gL-1) to 7.7 ṡ10-7 molSim-2s-1 (S = 3.5 gL-1) at 90 °C and were extrapolated at 16 °C (from 2.9 ṡ10-10 molSim-2s-1 at S = 0 gL-1 to 1.1 ṡ10-9 molSim-2s-1 at S = 3.5 gL-1). This positive relationship between glass dissolution rate and salinity degree is consistent with published investigations concerning the role of specific cations and ligands present in seawater, which can promote dissolution at the glass surface. These results illustrate the potential of river basaltic glass particles to dissolve quickly in the water column after entering into the brackish waters of estuaries, and before sinking on continental margins. Based on these dissolution rates and on assumptions on the particulate solid flux of fresh basaltic glass exported by rivers towards the ocean, the corresponding flux of dissolved Si is estimated to range between 2 and 8 ṡ1012 molSiyr-1. This is of the same order of magnitude as the estimated river dissolved Si flux, which represents therefore a significant input of Si into the ocean. Additionally, if the glass dissolution process remains congruent during the residence time of suspended particles into the water column, the K flux to the ocean could also be significantly affected.

  3. From position-specific isotope labeling towards soil fluxomics: a novel toolbox to assess the microbial impact on biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Apostel, C.; Dippold, M. A.; Kuzyakov, Y.

    2015-12-01

    Understanding the microbial impact on C and nutrient cycles is one of the most important challenges in terrestrial biogeochemistry. Transformation of low molecular weight organic substances (LMWOS) is a key step in all biogeochemical cycles because 1) all high molecular substances pass the LMWOS pool during their degradation and 2) only LMWOS can be taken up by microorganisms intact. Thus, the transformations of LMWOS are dominated by biochemical pathways of the soil microorganisms. Thus, understanding fluxes and transformations in soils requires a detailed knowledge on the microbial metabolic network and its control mechanism. Tracing C fate in soil by isotopes became on of the most applied and promising biogeochemistry tools but studies were nearly exclusively based on uniformly labeled substances. However, such tracers do not allow the differentiation of the intact use of the initial substances from its transformation to metabolites. The novel tool of position-specific labeling enables to trace molecule atoms separately and thus to determine the cleavage of molecules - a prerequisite for metabolic tracing. Position-specific labeling of basic metabolites and quantification of isotope incorporation in CO2 and bulk soil enabled following the basic metabolic pathways of microorganisms. However, the combination of position-specific 13C labeling with compound-specific isotope analysis of microbial biomarkers and metabolites like phospholipid fatty acids (PLFA) or amino sugars revealed new insights into the soil fluxome: First, it enables tracing specific anabolic pathways in diverse microbial communities in soils e.g. carbon starvation pathways versus pathways reflecting microbial growth. Second, it allows identification of specific pathways of individual functional microbial groups in soils in situ. Tracing metabolic pathways and understanding their regulating factors are crucial for soil C fluxomics i.e. the unravaling of the complex network of C transformations

  4. Searching for biogeochemical hot spots in three dimensions: Soil C and N cycling in hydropedologic settings in a northern hardwood forest

    NASA Astrophysics Data System (ADS)

    Morse, J. L.; Werner, S. F.; Gillin, C. P.; Goodale, C. L.; Bailey, S. W.; McGuire, K. J.; Groffman, P. M.

    2014-08-01

    Understanding and predicting the extent, location, and function of biogeochemical hot spots at the watershed scale is a frontier in environmental science. We applied a hydropedologic approach to identify (1) biogeochemical differences among morphologically distinct hydropedologic settings and (2) hot spots of microbial carbon (C) and nitrogen (N) cycling activity in a northern hardwood forest in Hubbard Brook Experimental Forest, New Hampshire, USA. We assessed variables related to C and N cycling in spodic hydropedologic settings (typical podzols, bimodal podzols, and Bh podzols) and groundwater seeps during August 2010. We found that soil horizons (Oi/Oe, Oa/A, and B) differed significantly for most variables. B horizons (>10 cm) accounted for 71% (±11%) of C pools and 62% (±10%) of microbial biomass C in the sampled soil profile, whereas the surface horizons (Oi/Oe and Oa/A; 0-10 cm) were dominant zones for N-cycle-related variables. Watershed-wide estimates of C and N cycling were higher by 34 to 43% (±17-19%) when rates, horizon thickness, and areal extent of each hydropedologic setting were incorporated, versus conventionally calculated estimates for typical podzols that included only the top 10 cm of mineral soil. Despite the variation in profile development in typical, bimodal, and Bh podzols, we did not detect significant differences in C and N cycling among them. Across all soil horizons and hydropedologic settings, we found strong links between biogeochemical cycling and soil C, suggesting that the accumulation of C in soils may be a robust indicator of microbial C and N cycling capacity in the landscape.

  5. Dense microbial community on a ferromanganese nodule from the ultra-oligotrophic South Pacific Gyre: Implications for biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Shiraishi, Fumito; Mitsunobu, Satoshi; Suzuki, Katsuhiko; Hoshino, Tatsuhiko; Morono, Yuki; Inagaki, Fumio

    2016-08-01

    During Integrated Ocean Drilling Program (IODP) Expedition 329, a deep-sea ferromanganese nodule and surrounding sediment were collected from the South Pacific Gyre, the most oligotrophic oceanic environment on earth. Using a combination of cryo-sectioning and fluorescence-based cell counting techniques, we determined that the microbial cell density at the very surface of the nodule was ∼108 cells cm-3, three orders of magnitude higher than that in the surrounding sediment. Analysis of bacterial and archaeal 16S rRNA gene sequences (∼1400 bp) indicated that the taxonomic composition of the nodule-associated community differed markedly from that of the sediment-associated community. Members of Marine Group I (MGI) Thaumarchaeota are potentially crucial for sustaining the high cell density because both ammonia and Cu were available on the nodule surface, making it suitable for ammonia-oxidizing chemolithoautotrophy mediated by copper enzymes. Combined cryo-sectioning and synchrotron analysis of the nodule surface revealed both hexagonal birnessite resembling δ-MnO2 and triclinic birnessite, minerals characteristic of biogenic oxide and its secondary product, respectively. Regardless of these possible biogenic features, only one gene sequence exhibited some similarity to previously identified manganese-oxidizing bacteria. On the other hand, MGI Thaumarchaeota were assumed as potential candidate of manganese oxidizers because they have multi-copper oxidase that is utilized by most known manganese oxidizers. Therefore, this archaeal group is considered to play a significant ecological role as a primary producer in biogeochemical elemental cycles in the ultra-oligotrophic abyssal plain.

  6. A biogeochemical model for phosphorus and nitrogen cycling in the Eastern Mediterranean Sea. Part 1. Model development, initialization and sensitivity

    NASA Astrophysics Data System (ADS)

    Van Cappellen, P.; Powley, H. R.; Emeis, K.-C.; Krom, M. D.

    2014-11-01

    The Eastern Mediterranean Sea (EMS) is the largest marine basin whose annual primary productivity is limited by phosphorus (P) rather than nitrogen (N). The basin is nearly entirely land-locked and receives substantial external nutrient fluxes, comparable for instance to those of the Baltic Sea. The biological productivity of the EMS, however, is among the lowest observed in the oceans. The water column exhibits very low P and N concentrations with N:P ratios in excess of the Redfield value. These unique biogeochemical features are analyzed using a mass balance model of the coupled P and N cycles in the EMS. The present paper describes the conceptual basis, quantitative implementation and sensitivity of the model. The model is initialized for the year 1950, that is, prior to the large increase in anthropogenic nutrient loading experienced by the EMS during the second half of the 20th century. In the companion paper, the model is used to simulate the P and N cycles during the period 1950-2000. The 1950 model set-up and sensitivity analyses support the following conclusions. Inorganic molar N:P ratios in excess of the 16:1 Redfield value observed in the water column reflect higher-than-Redfield N:P ratios of the external inputs, combined with negligible denitrification. Model simulations imply that the denitrification flux would have to increase by at least a factor of 14, relative to the 1950 flux, in order for the inorganic N:P ratio of the deep waters to approach the Redfield value. The higher

  7. Human Impact on Biogeochemical Cycles and Deposition Dynamics in Karstic Lakes: El Tobar Lake Record (Central Iberian Range, Spain)

    NASA Astrophysics Data System (ADS)

    Barreiro-Lostres, F.; Moreno-Caballud, A.; Giralt, S.; Hillman, A. L.; Brown, E. T.; Abbott, M. B.; Valero-Garces, B. L.

    2014-12-01

    Karstic lakes in the Iberian Range (Central Spain) provide a unique opportunity to test the human impact in the watersheds and the aquatic environments during historical times. We reconstruct the depositional evolution and the changes in biogeochemical cycles of El Tobar karstic lake, evaluating the response and the resilience of this Mediterranean ecosystem to both anthropogenic impacts and climate forcing during the last 1000 years. Lake El Tobar (40°32'N, 3°56'W; 1200 m a.s.l.; see Figure), 16 ha surface area, 20 m max. depth and permanent meromictic conditions, has a relatively large watershed (1080 ha). Five 8 m long sediment cores and short gravity cores where recovered, imaged, logged with a Geotek, described and sampled for geochemical analyses (elemental TOC, TIC, TN, TS), XRF scanner and ICP-MS, and dated (137Cs and 10 14C assays). The record is a combination of: i) laminated dark silts with terrestrial remains and diatoms and ii) massive to banded light silts (mm to cm -thick layers) interpreted as flood deposits. Sediments, TOC, and Br/Ti and Sr/Ca ratios identify four periods of increased sediment delivery occurred about 1500, 1800, 1850 and 1900 AD, coinciding with large land uses changes of regional relevance such as land clearing and increased population. Two main hydrological changes are clearly recorded in El Tobar sequence. The first one, marked by a sharp decrease in Mg, Ca and Si concentrations, took place about 1200 AD, and during a period of increasing lake level, which shifted from shallower to deeper facies and from carbonatic to clastic and organic-rich deposition. This change was likely related to increased water availability synchronous to the transition from the Medieval Climate Anomaly to the Little Ice Age. The second one was a canal construction in 1967 AD when a nearby reservoir provided fresh water influx to the lake, and resulted in stronger meromictic conditions in the system after canal construction, which is marked by lower

  8. A dynamic marine iron cycle module coupled to the University of Victoria Earth System Model: the Kiel Marine Biogeochemical Model 2 (KMBM2) for UVic 2.9

    NASA Astrophysics Data System (ADS)

    Nickelsen, L.; Keller, D. P.; Oschlies, A.

    2014-12-01

    Marine biological production and the associated biotic uptake of carbon in many ocean regions depend on the availability of nutrients in the euphotic zone. While large areas are limited by nitrogen and/or phosphorus, the micronutrient iron is considered the main limiting nutrient in the North Pacific, equatorial Pacific and Southern Ocean. Changes in iron availability via changes in atmospheric dust input are discussed to play an important role in glacial/interglacial cycles via climate feedbacks caused by changes in biological ocean carbon sequestration. Although many aspects of the iron cycle remain unknown, its incorporation into marine biogeochemical models is needed to test our current understanding and better constrain its role in the Earth system. In the University of Victoria Earth System Climate Model (UVic) iron limitation in the ocean was, until now, simulated pragmatically with an iron concentration masking scheme that did not allow a consistent interactive response to perturbations of ocean biogeochemistry or iron cycling sensitivity studies. Here, we replace the iron masking scheme with a dynamic iron cycle and compare the results to available observations and the previous marine biogeochemical model. Sensitivity studies are also conducted with the new model to test the importance of considering the variable solubility of iron in dust deposition, the importance of considering high resolution bathymetry for the sediment release of iron, the effect of scaling the sedimentary iron release with temperature and the sensitivity of the iron cycle to a climate change scenario.

  9. Environmental factors affecting rates of nitrogen cycling

    SciTech Connect

    Lipschultz, F.

    1984-01-01

    The nitrogen cycle in the eutrophic Delaware river was studied in late summer, 1983 using /sup 15/N tracer additions of NHG/sub 4//sup +/, NO/sub 2//sup -/, and NO/sub 3//sup -/. Rates for nine different transformations were calculated simultaneously with a least-squares minimization analysis. Light was found to stimulate ammonium uptake and to inhibit ammonium oxidation. Rates for nitrification, ammonium uptake by phytoplankton, and photosynthesis were integrated over 24 hours and river depth. High turbidity lifted the effect of light inhibition on nitrification and restricted phytoplankton uptake. Uptake of ammonium contributed over 95% of the inorganic nitrogen ration for phytoplankton, with dark uptake accounting for more than 50%. A mass-conservation, box model of river was used to calculate rate constants required to reproduce observed nutrient concentration changes. The calculated constants correlated well with the measured /sup 15/N and oxygen integrated rates. Water-column nitrification was the major loss term for NH/sub 4//sup +/, while water column regeneration was the primary source. Loss of oxidized nitrogen was insignificant. Oxygen consumption and air-water exchange far exceeded net photosynthetic oxygen production. Nitrification contributed less than 1% to the oxygen demand near Philadelphia but up to 25% further downstream. Production of NO and N/sub 2/O was measured under varying oxygen concentrations in batch cultures of the nitrifying bacteria Nitrosomonas europaea and Nitrosococcus oceanus. Production of both gases increased relative to nitrite production as oxygen levels decreased.

  10. Vertical fluxes of biogenic particles and associated biota in the eastern North Pacific: Implications for biogeochemical cycling and productivity

    NASA Astrophysics Data System (ADS)

    Taylor, Gordon T.; Karl, David M.

    1991-09-01

    Previously published data on vertical fluxes of particulate carbon (PC), nitrogen (PN), organisms (MICRO), and extracted adenosine triphosphate (ATP) into screened sediment traps (335 μm) from the VERTEX 5 and ADIOS I programs are reexamined as they relate to biogeochemical cycling and oceanic productivity. The four stations discussed represent an oligotrophic to mesotrophic gradient in total primary production (PT), ranging from 245 to 1141 mg Cm-2 d-1 and a gradient in PC flux from the euphotic zone, ranging from 12 to 164 mg Cm-2 d-1 for particles <335 μm in diameter. Vertical fluxes of PC, PN, MICRO, and ATP decreased as negative power functions of depth with significantly higher depth-dependent losses for ATP fluxes. The flux of intact biota (free, particle-associated, and some active "swimmers," measured microscopically and by extracted ATP) decreased rapidly in the upper 200 m, contributing as much as 52.4% at the most productive station and as little as 1.6% to the flux of PC at oligotrophic stations, remaining relatively constant or increasing slightly (to 3.4 - 9.6% PC flux) between 200 and 2000 m. Multiple regression analyses, expressing fluxes as functions of depth and PT or new production, PN, demonstrated that MICRO and ATP fluxes were more dependent on PT, PN, and depth than bulk PC or PN fluxes. The present analysis illustrates that while sinking particulate organic matter (POM) undergoes rapid attrition in the upper water column, the fluxes of sedimenting biota decrease at even higher rates. Findings support the hypothesis that in oceanic waters, POM sinking from the euphotic zone rapidly becomes a poor habitat for associated microbes, and mechanisms other than remineralization by attached microbes must be invoked to explain observed fluxes and attrition rates. This study also supports the hypothesis that the vertical flux of intact organisms is a more sensitive and less ambiguous record of upper ocean processes than bulk flux measurements of

  11. Overshoot of atmospheric oxygen caused by the Paleoproterozoic snowball glaciation: constraining its magnitude and duration from biogeochemical cycle modeling

    NASA Astrophysics Data System (ADS)

    Harada, M.; Ozaki, K.; Tajika, E.; Sekine, Y.

    2014-12-01

    Rise of atmospheric oxygen in the Paleoproterozoic has been long recognized as a unidirectional, stepwise oxidation event. However, recent geochemical studies have reported the occurrences of deep-water oxygenation and sulfate accumulation in the Paleoproterozoic oceans [e.g., 1], suggesting that the oxidation was a dynamic transition associated with an overshoot of oxygen (so called, 'the Great Oxygen Transition' or GOT) [2]. During the GOT, the oxygen levels might have achieved 0.1-1 Present Atmospheric Level (PAL) over ~108 years [2]. Such an intense long-term oxygen overshoot appears to require some specific mechanism and strong oxidative forcing as a trigger. In this study, we provide the first numerical model that is capable of explaining the dynamics of the atmospheric oxygen during the GOT. We focus on a climate jump at the end of the Paleoproterozoic snowball glaciation as a trigger, and constrain the magnitude and duration of the snowball-induced oxygenation by using a biogeochemical cycle model. The results show that super greenhouse condition after the glaciation causes an increase in nutrient input from the continent to the oceans, which lead to a high rate of organic carbon burial in the oceans. This triggers a rapid jump in oxygen levels from low (<10-5 PAL) to high (~0.01 PAL) steady states within <104 years after deglaciation. The jump in oxygen levels is followed by the massive deposition of carbonate minerals, which corresponds to the "cap-carbonates". The elevated rate of organic carbon burial is prolonged over ~106 years, which results in an overshoot of atmospheric oxygen by up to ~0.1-1 PAL. The overshoot lasts for ~107-108 years because net consumption of oxygen accumulated in the atmosphere does not proceed efficiently. Such an extensive overshoot causes the oxygenation of the deep-water, and lead to the accumulation of sulfate ions by up to 1-10 mM and the deposition of sulfate minerals in the oceans. These results are in good agreement

  12. Hypoxia Tolerance and Metabolic Suppression in Oxygen Minimum Zone Euphausiids: Implications for Ocean Deoxygenation and Biogeochemical Cycles.

    PubMed

    Seibel, Brad A; Schneider, Jillian L; Kaartvedt, Stein; Wishner, Karen F; Daly, Kendra L

    2016-10-01

    The effects of regional variations in oxygen and temperature levels with depth were assessed for the metabolism and hypoxia tolerance of dominant euphausiid species. The physiological strategies employed by these species facilitate prediction of changing vertical distributions with expanding oxygen minimum zones and inform estimates of the contribution of vertically migrating species to biogeochemical cycles. The migrating species from the Eastern Tropical Pacific (ETP), Euphausia eximia and Nematoscelis gracilis, tolerate a Partial Pressure (PO2) of 0.8 kPa at 10 °C (∼15 µM O2) for at least 12 h without mortality, while the California Current species, Nematoscelis difficilis, is incapable of surviving even 2.4 kPa PO2 (∼32 µM O2) for more than 3 h at that temperature. Euphausia diomedeae from the Red Sea migrates into an intermediate oxygen minimum zone, but one in which the temperature at depth remains near 22 °C. Euphausia diomedeae survived 1.6 kPa PO2 (∼22 µM O2) at 22 °C for the duration of six hour respiration experiments. Critical oxygen partial pressures were estimated for each species, and, for E. eximia, measured via oxygen consumption (2.1 kPa, 10 °C, n = 2) and lactate accumulation (1.1 kPa, 10 °C). A primary mechanism facilitating low oxygen tolerance is an ability to dramatically reduce energy expenditure during daytime forays into low oxygen waters. The ETP and Red Sea species reduced aerobic metabolism by more than 50% during exposure to hypoxia. Anaerobic glycolytic energy production, as indicated by whole-animal lactate accumulation, contributed only modestly to the energy deficit. Thus, the total metabolic rate was suppressed by ∼49-64%. Metabolic suppression during diel migrations to depth reduces the metabolic contribution of these species to vertical carbon and nitrogen flux (i.e., the biological pump) by an equivalent amount. Growing evidence suggests that metabolic suppression is a widespread strategy among migrating

  13. Hypoxia Tolerance and Metabolic Suppression in Oxygen Minimum Zone Euphausiids: Implications for Ocean Deoxygenation and Biogeochemical Cycles.

    PubMed

    Seibel, Brad A; Schneider, Jillian L; Kaartvedt, Stein; Wishner, Karen F; Daly, Kendra L

    2016-10-01

    The effects of regional variations in oxygen and temperature levels with depth were assessed for the metabolism and hypoxia tolerance of dominant euphausiid species. The physiological strategies employed by these species facilitate prediction of changing vertical distributions with expanding oxygen minimum zones and inform estimates of the contribution of vertically migrating species to biogeochemical cycles. The migrating species from the Eastern Tropical Pacific (ETP), Euphausia eximia and Nematoscelis gracilis, tolerate a Partial Pressure (PO2) of 0.8 kPa at 10 °C (∼15 µM O2) for at least 12 h without mortality, while the California Current species, Nematoscelis difficilis, is incapable of surviving even 2.4 kPa PO2 (∼32 µM O2) for more than 3 h at that temperature. Euphausia diomedeae from the Red Sea migrates into an intermediate oxygen minimum zone, but one in which the temperature at depth remains near 22 °C. Euphausia diomedeae survived 1.6 kPa PO2 (∼22 µM O2) at 22 °C for the duration of six hour respiration experiments. Critical oxygen partial pressures were estimated for each species, and, for E. eximia, measured via oxygen consumption (2.1 kPa, 10 °C, n = 2) and lactate accumulation (1.1 kPa, 10 °C). A primary mechanism facilitating low oxygen tolerance is an ability to dramatically reduce energy expenditure during daytime forays into low oxygen waters. The ETP and Red Sea species reduced aerobic metabolism by more than 50% during exposure to hypoxia. Anaerobic glycolytic energy production, as indicated by whole-animal lactate accumulation, contributed only modestly to the energy deficit. Thus, the total metabolic rate was suppressed by ∼49-64%. Metabolic suppression during diel migrations to depth reduces the metabolic contribution of these species to vertical carbon and nitrogen flux (i.e., the biological pump) by an equivalent amount. Growing evidence suggests that metabolic suppression is a widespread strategy among migrating

  14. Effects of near-bottom water oxygen concentration on biogeochemical cycling of C, N and S in sediments of the Gulf of Gdansk (southern Baltic)

    NASA Astrophysics Data System (ADS)

    Lukawska-Matuszewska, Katarzyna; Kielczewska, Joanna

    2016-04-01

    Sediments from four sampling sites in the Gulf of Gdansk were sampled to test how different oxygen concentrations in near-bottom water affects biogeochemical cycling of C, N and S. Vertical distributions of content of organic carbon (OC), total nitrogen (TN) and total sulfur (TS) and number of sulfate-reducing bacteria (SRB) in sediments were determined. Pore water total alkalinity (TA), dissolved inorganic carbon (DIC), sulfate, hydrogen sulfide, ammonium and phosphate were analyzed and benthic fluxes of DIC, hydrogen sulfide and ammonium were calculated. Concentrations of OC and TN decreased and concentration of TS increased with sediment depth. Highest concentrations of OC, TN and TS were observed in silty clay sediments from hypoxic and anoxic sediments below the permanent halocline. Organic matter (OM) accumulation in sediments and oxygen deficiency in near-bottom water stimulate preservation of OC and burial of TS in this area. Concentrations of TA, DIC, hydrogen sulfide, ammonium and phosphate in pore water increased, while concentration of sulfate decreased with sediment depth. Hydrogen sulfide, ammonium and phosphate was a significant additional source of TA in pore water under hypoxic and anoxic conditions. Mineralization of OM at oxygen concentrations <2 ml l-1 occurred mainly via bacterial sulfate reduction. Diurnal hydrogen sulfide fluxes under hypoxic conditions ranged from 400 to 1240 μmol m-2 d-1. Ammonium fluxes were estimated on 534 - 924 μmol m-2 d-1. Corresponding fluxes measured under anoxic conditions were 266 μmol m-2 d-1 and 106 μmol m-2 d-1. Sediments under oxic conditions became a place of the intensive regeneration of carbon - DIC flux from sediment reached 2775 μmol m-2 day-1. Sediment-water DIC fluxes under hypoxic and anoxic conditions were much lower and ranged from 1015 to 1208 μmol m-2 d-1.

  15. Life under ice: Investigating microbial-related biogeochemical cycles in the seasonally-covered Great Lake Onego, Russia

    NASA Astrophysics Data System (ADS)

    Thomas, Camille; Ariztegui, Daniel; Victor, Frossard; Emilie, Lyautey; Marie-Elodie, Perga; Life Under Ice Scientific Team

    2016-04-01

    The Great European lakes Ladoga and Onego are important resources for Russia in terms of drinking water, energy, fishing and leisure. Because their northern location (North of Saint Petersburgh), these lakes are usually ice-covered during winter. Due to logistical reasons, their study has thus been limited to the ice-free periods, and very few data are available for the winter season. As a matter of fact, comprehension of large lakes behaviour in winter is very limited as compared to the knowledge available from small subpolar lakes or perennially ice-covered polar lakes. To tackle this issue, an international consortium of scientists has gathered around the « life under ice » project to investigate physical, chemical and biogeochemical changes during winter in Lake Onego. Our team has mainly focused on the characterization and quantification of biological processes, from the water column to the sediment, with a special focus on methane cycling and trophic interactions. A first « on-ice » campaign in March 2015 allowed the sampling of a 120 cm sedimentary core and the collection of water samples at multiple depths. The data resulting from this expedition will be correlated to physical and chemical parameters collected simultaneously. A rapid biological activity test was applied immediately after coring in order to test for microbial activity in the sediments. In situ adenosine-5'-triphosphate (ATP) measurements were carried out in the core and taken as an indication of living organisms within the sediments. The presence of ATP is a marker molecule for metabolically active cells, since it is not known to form abiotically. Deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) were extracted from these samples, and quantified. Quantitative polymerase chain reactions (PCR) were performed on archaeal and bacterial 16S rRNA genes used to reconstruct phylogenies, as well as on their transcripts. Moreover, functional genes involved in the methane and nitrogen cycles

  16. Microbial communities of Hyper saline Lake Salda and Acigol, SW Turkey and Their effects on Biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Balci, N.; Karaguler, N. G.; Ece, I.; Romanek, C.

    2009-12-01

    The modern lakes Acigol and Salda, located in the “Lake District” of SW of Turkey, are known for the precipitation of sodium, magnesium, and potassium salts, and Mg-rich carbonate, respectively. As an analogue to extraterrestrial environments, these lakes provide opportunities to study microbe-mineral interactions in extreme environments, and in turn to better understand biogeochemical conditions in such environments. Lake Salda is an evaporatic alkaline lake (pH: 9) that covers an area of about 45 km2 in a partially serpentinized ophiolitic rocks. Water samples collected from the surface contain c. 295 mg/L Mg and c. 190 mg/L Na at a pH of 9.1, while the stream entering the lake (pH range 7-9.5) had values of 55 mg/L and 3 mg/L, respectively, indicating significant Na enrichment relative to Mg in the lake. Microbiological analyses of sediment samples from the stream and the lake indicate a diverse microbial community. Lake Acigol is a perennial lake with a maximum salinity of about 200 g/L and covers an area of 55-60 km2 . Water samples were taken from the lake and ponds around the lake in addition to sediment samples. The water chemistry revealed relatively high Na and SO4 concentrations both in the lake (30 gr/L, 33.36 gr/L), and the ponds (100 mg/L, 123 mg/L). The mineralogical analyses of sediments showed gypsum, halite, carbonate (aragonite, huntite) precipitation in the lake and ponds. The geochemical and microbiological data from both lakes suggest that the metabolic activity of microorganisms (cyanobacteria, sulfate reducing bacteria) significantly affect the surrounding microenvironment, overcoming the common kinetic inhibitors to carbonate mineral precipitation by raising the pH and Mg- and HCO3-ion concentration, and by reducing sulfate ion concentration of the waters. We are currently undertaking laboratory experiments to elucidate biological influences on the precipitation of carbonate minerals under field conditions.

  17. 2500 high-quality genomes reveal that the biogeochemical cycles of C, N, S and H are cross-linked by metabolic handoffs in the terrestrial subsurface

    NASA Astrophysics Data System (ADS)

    Anantharaman, K.; Brown, C. T.; Hug, L. A.; Sharon, I.; Castelle, C. J.; Shelton, A.; Bonet, B.; Probst, A. J.; Thomas, B. C.; Singh, A.; Wilkins, M.; Williams, K. H.; Tringe, S. G.; Beller, H. R.; Brodie, E.; Hubbard, S. S.; Banfield, J. F.

    2015-12-01

    Microorganisms drive the transformations of carbon compounds in the terrestrial subsurface, a key reservoir of carbon on earth, and impact other linked biogeochemical cycles. Our current knowledge of the microbial ecology in this environment is primarily based on 16S rRNA gene sequences that paint a biased picture of microbial community composition and provide no reliable information on microbial metabolism. Consequently, little is known about the identity and metabolic roles of the uncultivated microbial majority in the subsurface. In turn, this lack of understanding of the microbial processes that impact the turnover of carbon in the subsurface has restricted the scope and ability of biogeochemical models to capture key aspects of the carbon cycle. In this study, we used a culture-independent, genome-resolved metagenomic approach to decipher the metabolic capabilities of microorganisms in an aquifer adjacent to the Colorado River, near Rifle, CO, USA. We sequenced groundwater and sediment samples collected across fifteen different geochemical regimes. Sequence assembly, binning and manual curation resulted in the recovery of 2,542 high-quality genomes, 27 of which are complete. These genomes represent 1,300 non-redundant organisms comprising both abundant and rare community members. Phylogenetic analyses involving ribosomal proteins and 16S rRNA genes revealed the presence of up to 34 new phyla that were hitherto unknown. Less than 11% of all genomes belonged to the 4 most commonly represented phyla that constitute 93% of all currently available genomes. Genome-specific analyses of metabolic potential revealed the co-occurrence of important functional traits such as carbon fixation, nitrogen fixation and use of electron donors and electron acceptors. Finally, we predict that multiple organisms are often required to complete redox pathways through a complex network of metabolic handoffs that extensively cross-link subsurface biogeochemical cycles.

  18. Anthropogenic influences on the input and biogeochemical cycling of nutrients and mercury in Great Salt Lake, Utah, USA

    USGS Publications Warehouse

    Naftz, D.; Angeroth, C.; Kenney, T.; Waddell, B.; Darnall, N.; Silva, S.; Perschon, C.; Whitehead, J.

    2008-01-01

    Despite the ecological and economic importance of Great Salt Lake (GSL), little is known about the input and biogeochemical cycling of nutrients and trace elements in the lake. In response to increasing public concern regarding anthropogenic inputs to the GSL ecosystem, the US Geological Survey (USGS) and US Fish and Wildlife Service (USFWS) initiated coordinated studies to quantify and evaluate the significance of nutrient and Hg inputs into GSL. A 6??? decrease in ??15N observed in brine shrimp (Artemia franciscana) samples collected from GSL during summer time periods is likely due to the consumption of cyanobacteria produced in freshwater bays entering the lake. Supporting data collected from the outflow of Farmington Bay indicates decreasing trends in ??15N in particulate organic matter (POM) during the mid-summer time period, reflective of increasing proportions of cyanobacteria in algae exported to GSL on a seasonal basis. The C:N molar ratio of POM in outflow from Farmington Bay decreases during the summer period, supportive of the increased activity of N fixation indicated by decreasing ??15N in brine shrimp and POM. Although N fixation is only taking place in the relatively freshwater inflows to GSL, data indicate that influx of fresh water influences large areas of the lake. Separation of GSL into two distinct hydrologic and geochemical systems from the construction of a railroad causeway in the late 1950s has created a persistent and widespread anoxic layer in the southern part of GSL. This anoxic layer, referred to as the deep brine layer (DBL), has high rates of SO42 - reduction, likely increasing the Hg methylation capacity. High concentrations of methyl mercury (CH3Hg) (median concentration = 24 ng/L) were observed in the DBL with a significant proportion (31-60%) of total Hg in the CH3Hg form. Hydroacoustic and sediment-trap evidence indicate that turbulence introduced by internal waves generated during sustained wind events can temporarily mix the

  19. A dynamic marine iron cycle module coupled to the University of Victoria Earth System Model: the Kiel Marine Biogeochemical Model 2 for UVic 2.9

    NASA Astrophysics Data System (ADS)

    Nickelsen, L.; Keller, D. P.; Oschlies, A.

    2015-05-01

    Marine biological production as well as the associated biotic uptake of carbon in many ocean regions depends on the availability of nutrients in the euphotic zone. While large areas are limited by nitrogen and/or phosphorus, the micronutrient iron is considered the main limiting nutrient in the North Pacific, equatorial Pacific and Southern Ocean. Changes in iron availability via changes in atmospheric dust input are discussed to play an important role in glacial-interglacial cycles via climate feedbacks caused by changes in biological ocean carbon sequestration. Although many aspects of the iron cycle remain unknown, its incorporation into marine biogeochemical models is needed to test our current understanding and better constrain its role in the Earth system. In the University of Victoria Earth System Climate Model (UVic) iron limitation in the ocean was, until now, simulated pragmatically with an iron concentration masking scheme that did not allow a consistent interactive response to perturbations of ocean biogeochemistry or iron cycling sensitivity studies. Here, we replace the iron masking scheme with a dynamic iron cycle and compare the results to available observations and the previous marine biogeochemical model. Sensitivity studies are also conducted with the new model to test the sensitivity of the model to parameterized iron ligand concentrations, the importance of considering the variable solubility of iron in dust deposition, the importance of considering high-resolution bathymetry for the sediment release of iron, the effect of scaling the sedimentary iron release with temperature and the sensitivity of the iron cycle to a climate change scenario.

  20. The Role of Heterotrophic Microbial Communities in Estuarine C Budgets and the Biogeochemical C Cycle with Implications for Global Warming: Research Opportunities and Challenges.

    PubMed

    Anderson, O Roger

    2016-05-01

    Estuaries are among the most productive and economically important marine ecosystems at the land-ocean interface and contribute significantly to exchange of CO2 with the atmosphere. Estuarine microbial communities are major links in the biogeochemical C cycle and flow of C in food webs from primary producers to higher consumers. Considerable attention has been given to bacteria and autotrophic eukaryotes in estuarine ecosystems, but less research has been devoted to the role of heterotrophic eukaryotic microbes. Current research is reviewed here on the role of heterotrophic eukaryotic microbes in C biogeochemistry and ecology of estuaries, with particular attention to C budgets, trophodynamics, and the metabolic fate of C in microbial communities. Some attention is given to the importance of these processes in climate change and global warming, especially in relation to sources and sinks of atmospheric CO2 , while also documenting the current paucity of research on the role of eukaryotic microbes that contribute to this larger question of C biogeochemistry and the environment. Some recommendations are made for future directions of research and opportunities of applying newer technologies and analytical approaches to a more refined analysis of the role of C in estuarine microbial community processes and the biogeochemical C cycle.

  1. Up-scaling of process-based eco-hydrology model to global scale for identification of hot spots in boundless biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2013-12-01

    Recent research shows inland water may play some role in continental biogeochemical cycling though its contribution has remained uncertain due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which includes surface-groundwater interactions and down-scaling process from regional to local simulation with finer resolution, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes in east Asia. In this study, NICE was further extended to implement map factor and non-uniform grid through up-scaling process of coordinate transformation from rectangular to longitude-latitude system applicable to global scale. This improved model was applied to several basins in Eurasia to evaluate the impact of coordinate transformation on eco-hydrological changes. Simulated eco-hydrological process after up-scaling corresponded reasonably to that in the original there after evaluating the effect of different latitude. Then, the model was expanded to evaluate global hydrologic cycle by using various global datasets. The simulated result agreed reasonably with that in the previous research (Fan et al., 2013) and extended to clarify further eco-hydrological process in global scale. This simulation system would play important role in identification of spatio-temporal hot spots in boundless biogeochemical cycle along terrestrial-aquatic continuum for global environmental change (Cole et al. 2007; Battin et al. 2009; Frei et al. 2012).

  2. Crank inertial load affects freely chosen pedal rate during cycling.

    PubMed

    Hansen, Ernst Albin; Jørgensen, Lars Vincents; Jensen, Kurt; Fregly, Benjamin Jon; Sjøgaard, Gisela

    2002-02-01

    Cyclists seek to maximize performance during competition, and gross efficiency is an important factor affecting performance. Gross efficiency is itself affected by pedal rate. Thus, it is important to understand factors that affect freely chosen pedal rate. Crank inertial load varies greatly during road cycling based on the selected gear ratio. Nevertheless, the possible influence of crank inertial load on freely chosen pedal rate and gross efficiency has never been investigated. This study tested the hypotheses that during cycling with sub-maximal work rates, a considerable increase in crank inertial load would cause (1) freely chosen pedal rate to increase, and as a consequence, (2) gross efficiency to decrease. Furthermore, that it would cause (3) peak crank torque to increase if a constant pedal rate was maintained. Subjects cycled on a treadmill at 150 and 250W, with low and high crank inertial load, and with preset and freely chosen pedal rate. Freely chosen pedal rate was higher at high compared with low crank inertial load. Notably, the change in crank inertial load affected the freely chosen pedal rate as much as did the 100W increase in work rate. Along with freely chosen pedal rate being higher, gross efficiency at 250W was lower during cycling with high compared with low crank inertial load. Peak crank torque was higher during cycling at 90rpm with high compared with low crank inertial load. Possibly, the subjects increased the pedal rate to compensate for the higher peak crank torque accompanying cycling with high compared with low crank inertial load. PMID:11784546

  3. MEDUSA-2.0: an intermediate complexity biogeochemical model of the marine carbon cycle for climate change and ocean acidification studies

    NASA Astrophysics Data System (ADS)

    Yool, A.; Popova, E. E.; Anderson, T. R.

    2013-02-01

    MEDUSA-1.0 (Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification) was developed as an "intermediate complexity" plankton ecosystem model to study the biogeochemical response, and especially that of the so-called "biological pump", to anthropogenically-driven change in the World Ocean (Yool et al., 2011). The base currency in this model was nitrogen from which fluxes of organic carbon, including export to the deep ocean, were calculated by invoking fixed C:N ratios in phytoplankton, zooplankton and detritus. Since the beginning of the industrial era, the atmospheric concentration of carbon dioxide (CO2) has significantly increased above its natural, inter-glacial background concentration. Simulating and predicting the carbon cycle in the ocean in its entirety, including ventilation of CO2 with the atmosphere and the resulting impact of ocean acidification on marine ecosystems, therefore requires that both organic and inorganic carbon be afforded a full representation in the model specification. Here, we introduce MEDUSA-2.0, an expanded successor model which includes additional state variables for dissolved inorganic carbon, alkalinity, dissolved oxygen and detritus carbon (permitting variable C:N in exported organic matter), as well as a simple benthic formulation and extended parameterisations of phytoplankton growth, calcification and detritus remineralisation. A full description of MEDUSA-2.0, including its additional functionality, is provided and a multi-decadal hindcast simulation described (1860-2005), to evaluate the biogeochemical performance of the model.

  4. A model of biogeochemical cycling of phosphorus, nitrogen, oxygen, and sulphur in the ocean: One step toward a global climate model

    NASA Astrophysics Data System (ADS)

    Shaffer, Gary

    1989-02-01

    An ocean model has been developed which, for prescribed physics, deals with interrelationships between chemical distributions, biogeochemical sinks and sources, chemical reactions at redox fronts, and transports across the air-sea and sediment-water interfaces. In its first application here, the model focuses on biogeochemical cycling of phosphorus, nitrogen, oxygen, and sulphur in an ocean forced by river input of nutrients. This is a natural starting point for a global climate model since ocean circulation and biology determine atmospheric CO2 concentrations for a given inventory of inorganic C and oceanic production is controlled mainly by the availability of inorganic P and/or N. A general approach is taken to look at oxic versus anoxic conditions, P versus N limitation of primary production, with or without inorganic removal of phosphate to the sediments. As demanded by this approach, the model is nonlinear and continuous in a vertical coordinate. To focus on the biogeochemical aspects, ocean physics are kept as simple as possible. Cold, oxygen-rich water sinks at high latitudes and is upwelled with a constant velocity. Turbulent mixing is parameterized with a constant, vertical diffusion coefficient. The biogeochemical processes considered are new production, burial, nitrogen fixation, phosphorite formation, and three types of organic decomposition: oxidation with O2, denitrification, and sulphate reduction. Organic matter is taken to consist of a high- and a low-reactive fraction. The chemical species considered explicitly are PO43--P, NO3--N, O2, NH4+-N and H2S-S. Results indicate that a change from oxic to weakly anoxic conditions at middepths in a P-limited ocean would lead to strong local denitrification and low nitrate concentrations throughout the water column. New production would also become dominated by nitrogen fixers. Geological evidence implies that anoxic conditions in the water column have been rare in the Phanerozoic ocean. Both phosphorite

  5. Carbon Nanotubes Influence the Enzyme Activity of Biogeochemical Cycles of Carbon, Nitrogen, Phosphorus and the Pathogenesis of Plants in Annual Agroecosystems

    NASA Astrophysics Data System (ADS)

    Vaishlya, O. B.; Osipov, N. N.; Guseva, N. V.

    2015-09-01

    We conducted pre-sowing seed treatment of spring wheat carbon nanotubes modified with thionyl chloride, ethylene diamine, azobenzole, and dodecylamine. CNTs did not disrupt the structure of the crop, but the activity of extracellular enzymes in the rhizosphere of plants in the flowering stage changed: laccase works more poorly in the variant of the CNTs with the amino groups exochitinase and phosphatase activity increased in the case of chlorinated CNTs, OH and COOH groups on the surface of the nanotubes twice accelerate work β-glucosidase. The changes observed in the biogeochemical cycles in the rhizosphere are a possible cause of the effect of nanotubes on the development of epidemic diseases of wheat.

  6. Biogeochemical Cycling of Fe, S, C, N, and Mo in the 3.2 Ga ocean: Constraints from DXCL-DP Black Shales from Pilbara, Western Australia

    NASA Astrophysics Data System (ADS)

    Yamaguchi, K. E.; Naraoka, H.; Ikehara, M.; Ito, T.; Kiyokawa, S.

    2014-12-01

    Records of geochemical cycling of bio-essential, redox-sensitive elements have keys to decipher mysteries of the co-evolution of Earth and life. To obtain insight into biogeochemical cycling of those elements and early evolution of microbial biosphere from high-quality samples, we drilled through Mesoarchean strata in coastal Pilbara (Dixon Island-Cleaverville Drilling Project, see Yamaguchi et al., 2009; Kiyokawa et al., 2012), and obtained 3.2 Ga old drillcores (CL1, CL2, and DX) of sulfide-rich black shales in the Cleaverville Group, Pilbara Supergroup. We conducted a systematic geochemical study involving sequential extractions of Fe, S, C, and N for phase-dependent contents (e.g., pyrite-Fe, reactive-Fe, highly reactive-Fe, unreactive-Fe, pyrite-S, sulfate-S, organic-S, elemental-S, Corg, Ccarb, Norg, and Nclay) and their stable isotope compositions, micro FT-IR and laser Raman spectroscopy for extracted kerogen, in addition to major and trace (redox-sensitive; e.g., Mo) element analysis, for >100 samples. Here we integrate our recent multidisciplinary investigations into the redox state of ocean and nature of microbial biosphere in the ocean 3.2 Ga ago. All of the obtained data are very difficult to explain only by geochemical processes in strictly anoxic environments, where both atmosphere and oceans were completely anoxic, like an environment before the inferred "Great Oxidation Event" when pO2 was lower than 0.00001 PAL (e.g., Holland, 1994). Our extensive data set consistently suggests that oxygenic photosynthesis, bacterial sulfate reduction, and microbially mediated redox-cycling of nitrogen, possibly involving denitrification and N2-fixation, are very likely to have been operating, and may be used as a strong evidence for at least local and temporal existence of oxidized environment as far back as 3.2 Ga ago. Modern-style biogeochemical cycling of Fe, S, C, N, and Mo has been operating since then. The atmosphere-hydrosphere system 3.2 Ga ago would have

  7. Biogeochemical characterization of the Cointzio reservoir (Morelia, Mexico) and identification of a watershed-dependent cycling of nutrients

    NASA Astrophysics Data System (ADS)

    Némery, J.; Alvarado, R.; Gratiot, N.; Duvert, C.; Mahé, F.; Duwig, C.; Bonnet, M.; Prat, C.; Esteves, M.

    2009-12-01

    to May), the baseflow is much more concentrated in dissolved nutrients. On the contrary, the high flows (June to October) bring a high amount of suspended sediments (up to 50g/L) that transport nutrients such as particulate P. Despite the high turbidity level of the reservoir, chlorophyll a concentrations appear important (70 µg/L during the dry season) especially in the first five meters of the water column. The phytoplankton community is dominated by Euglenophyta and Cyanobacteria groups typical of eutrophic waters. This study is the first complete biogeochemical survey of the Cointzio watershed. Results acquired will be used in a 3D biogeochemical model ELMO (Bonnet and Wessen, 2001) with the objective of providing a quantitative and update analysis of the water quality. The model already reproduced thermal stratification but furthers runs are needed to calibrate the biogeochemical modules and provide an efficient tool to reservoir’s managers.

  8. Ni biogeochemical cycle through geological time: insights from Ni isotope variations in modern and ancient marine metallifereous deposits

    NASA Astrophysics Data System (ADS)

    Gueguen, B.; Rouxel, O.; Ponzevera, E.; Sorensen, J. V.; Toner, B.; Bekker, A.

    2011-12-01

    Studies of isotopic composition of transition metals such as Fe, Cu, Zn, and Mo as biogeochemical tracers became popular recently. Since Ni is ubiquitous in marine metallifereous deposits and its concentration in water column is coupled to that of nutrients, it has a potential as a biogeochemical tracer. Isotopic analyses were performed on a Neptune MC-ICP-MS using a double-spike correction method for instrumental mass bias. Deep-sea ferromanganese crusts have been used to establish a record of seawater over the last 60 Myr. Our results show that Fe-Mn crusts from both Atlantic and Pacific oceans are systematically enriched in heavy isotopes relative to Bulk Silicate Earth with δ60/58Ni values ranging from 0.30 to 1.80% (2se = 0.04%). In contrast, Iron Formations (IF) with ages ranging from 3.8 to 0.7 Gyr display a wider range of values with a striking negative Ni isotope excursion down to -2.46% (2se = 0.03%) in Neoproterozoic IF. Although correlation between Ni isotope compositions, Ni concentrations and BIFs ages seems to be lacking, several Ni isotope excursions to either positive or negative Ni isotope values are notable prior to 2.4 Gyr. Methanogens were likely abundant in Precambrian water column until they retreated to pore waters and local environments once the oceans were oxygenated after the Great Oxidation Event (GOE). They preferentially uptake light Ni isotopes leaving isotopically heavier Ni in oceans. Our Ni isotope record of Precambrian IF does not show a unidirectional change across the GOE implying that Ni isotope composition of the Archean oceans was not dominated by this metabolism. Preliminary Ni adsorption experiments on Fe-Mn oxy-hydroxides show a maximum fractionation factor between the mineral phase and aqueous solution of -1.00% (2se = 0.03%). Hence, isotopic variations in Fe-Mn crusts and IF cannot be simply explained by adsorption processes, but require changes in composition of either Ni sources (local or global) to seawater (e

  9. Road Salt Accumulation and Wash-out in Stormwater Detention Basins: Patterns and Implications for Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    McPhillips, L. E.; Walter, M. T.

    2014-12-01

    There is increasing evidence that salt application to roads and parking lots in winter is driving a rise in chloride concentrations in streams in the northeastern United States. Our research focuses specifically on salt dynamics in stormwater detention basins, which receive runoff directly from parking lots and detain it before it reaches the stream. The four study basins are located on the Cornell University campus in Ithaca, NY USA. Between summer 2012 and 2014, soil electrical conductivity was continuously monitored inside and outside the basins using Decagon 5TE sensors and dataloggers. In two basins which drain stormwater quickly, conductivity levels changed minimally over the year. However, in the other two basins which drain much slower and often are saturated, conductivity increased through the winter, peaking at 8-10 mS/cm, and then took several months to decrease to baseline levels; thus the basins served as a source of salt to outflowing water even into the summer. This annual variation in soil salinity has implications for plant and microbial communities living in these basins. Research by colleagues has indicated that changing salinity can alter microbial communities and impact biogeochemical processes that play a role in water quality remediation. Thus we are also investigating the impact of salinity on denitrification rates in these basins. All of this information will help us understand what role stormwater detention basins are playing in controlling fluxes of road salt in watersheds, as well as how changing salinity influences the ecosystem services provided by these basins.

  10. The science of cycling: factors affecting performance - part 2.

    PubMed

    Faria, Erik W; Parker, Daryl L; Faria, Irvin E

    2005-01-01

    This review presents information that is useful to athletes, coaches and exercise scientists in the adoption of exercise protocols, prescription of training regimens and creation of research designs. Part 2 focuses on the factors that affect cycling performance. Among those factors, aerodynamic resistance is the major resistance force the racing cyclist must overcome. This challenge can be dealt with through equipment technological modifications and body position configuration adjustments. To successfully achieve efficient transfer of power from the body to the drive train of the bicycle the major concern is bicycle configuration and cycling body position. Peak power output appears to be highly correlated with cycling success. Likewise, gear ratio and pedalling cadence directly influence cycling economy/efficiency. Knowledge of muscle recruitment throughout the crank cycle has important implications for training and body position adjustments while climbing. A review of pacing models suggests that while there appears to be some evidence in favour of one technique over another, there remains the need for further field research to validate the findings. Nevertheless, performance modelling has important implications for the establishment of performance standards and consequent recommendations for training.

  11. The science of cycling: factors affecting performance - part 2.

    PubMed

    Faria, Erik W; Parker, Daryl L; Faria, Irvin E

    2005-01-01

    This review presents information that is useful to athletes, coaches and exercise scientists in the adoption of exercise protocols, prescription of training regimens and creation of research designs. Part 2 focuses on the factors that affect cycling performance. Among those factors, aerodynamic resistance is the major resistance force the racing cyclist must overcome. This challenge can be dealt with through equipment technological modifications and body position configuration adjustments. To successfully achieve efficient transfer of power from the body to the drive train of the bicycle the major concern is bicycle configuration and cycling body position. Peak power output appears to be highly correlated with cycling success. Likewise, gear ratio and pedalling cadence directly influence cycling economy/efficiency. Knowledge of muscle recruitment throughout the crank cycle has important implications for training and body position adjustments while climbing. A review of pacing models suggests that while there appears to be some evidence in favour of one technique over another, there remains the need for further field research to validate the findings. Nevertheless, performance modelling has important implications for the establishment of performance standards and consequent recommendations for training. PMID:15831060

  12. An approach to quantify sources, seasonal change, and biogeochemical processes affecting metal loading in streams: Facilitating decisions for remediation of mine drainage

    USGS Publications Warehouse

    Kimball, B.A.; Runkel, R.L.; Walton-Day, K.

    2010-01-01

    Historical mining has left complex problems in catchments throughout the world. Land managers are faced with making cost-effective plans to remediate mine influences. Remediation plans are facilitated by spatial mass-loading profiles that indicate the locations of metal mass-loading, seasonal changes, and the extent of biogeochemical processes. Field-scale experiments during both low- and high-flow conditions and time-series data over diel cycles illustrate how this can be accomplished. A low-flow experiment provided spatially detailed loading profiles to indicate where loading occurred. For example, SO42 - was principally derived from sources upstream from the study reach, but three principal locations also were important for SO42 - loading within the reach. During high-flow conditions, Lagrangian sampling provided data to interpret seasonal changes and indicated locations where snowmelt runoff flushed metals to the stream. Comparison of metal concentrations between the low- and high-flow experiments indicated substantial increases in metal loading at high flow, but little change in metal concentrations, showing that toxicity at the most downstream sampling site was not substantially greater during snowmelt runoff. During high-flow conditions, a detailed temporal sampling at fixed sites indicated that Zn concentration more than doubled during the diel cycle. Monitoring programs must account for diel variation to provide meaningful results. Mass-loading studies during different flow conditions and detailed time-series over diel cycles provide useful scientific support for stream management decisions.

  13. MEDUSA-2.0: an intermediate complexity biogeochemical model of the marine carbon cycle for climate change and ocean acidification studies

    NASA Astrophysics Data System (ADS)

    Yool, A.; Popova, E. E.; Anderson, T. R.

    2013-10-01

    MEDUSA-1.0 (Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification) was developed as an "intermediate complexity" plankton ecosystem model to study the biogeochemical response, and especially that of the so-called "biological pump", to anthropogenically driven change in the World Ocean (Yool et al., 2011). The base currency in this model was nitrogen from which fluxes of organic carbon, including export to the deep ocean, were calculated by invoking fixed C:N ratios in phytoplankton, zooplankton and detritus. However, due to anthropogenic activity, the atmospheric concentration of carbon dioxide (CO2) has significantly increased above its natural, inter-glacial background. As such, simulating and predicting the carbon cycle in the ocean in its entirety, including ventilation of CO2 with the atmosphere and the resulting impact of ocean acidification on marine ecosystems, requires that both organic and inorganic carbon be afforded a more complete representation in the model specification. Here, we introduce MEDUSA-2.0, an expanded successor model which includes additional state variables for dissolved inorganic carbon, alkalinity, dissolved oxygen and detritus carbon (permitting variable C:N in exported organic matter), as well as a simple benthic formulation and extended parameterizations of phytoplankton growth, calcification and detritus remineralisation. A full description of MEDUSA-2.0, including its additional functionality, is provided and a multi-decadal spin-up simulation (1860-2005) is performed. The biogeochemical performance of the model is evaluated using a diverse range of observational data, and MEDUSA-2.0 is assessed relative to comparable models using output from the Coupled Model Intercomparison Project (CMIP5).

  14. Planetary Biogeochemical Stewardship (Invited)

    NASA Astrophysics Data System (ADS)

    Schlesinger, W. H.

    2010-12-01

    Many of today’s most pressing environmental problems have a basis in chemistry—that is human disruption of global biogeochemical cycles. Humans have enhanced the movement of C, N, P, and S in the global cycle of these elements, with widespread consequences such as climate change, hypoxia and acid rain. Recent attempts to calculate thresholds of global vulnerability ignore ample evidence that human impacts on the Earth’s chemical environment yield progressive degradation of the biosphere, especially its species diversity. Our collect global impact now exceeds natural processes of planetary remediation—clearly an unsustainable path. I will attempt to provide a framework to evaluate suggested attempts to mitigate current human impact on global biogeochemical cycles. Cap-and-trade systems are ideal for perturbations that involve a limited number of point sources that supplement a small background flux to the atmosphere, such as S. Better land management may be the most attractive way to mitigate human impacts to the Nitrogen cycle, where the potential for enhanced denitrification could respond to the order-of-magnitude of the current human perturbation. Impacts to the carbon cycle, seen through rising CO2 in Earth’s atmosphere, will require switching to energy that does not depend on fossil carbon.

  15. Chemometric studies in the Lagoon of Venice, Italy. Annual evolution of sulphur species and relationship to biogeochemical cycles in lagoon water.

    PubMed

    Moret, Ivo; Gambaro, Andrea; Piazza, Rossano; Corami, Fabiana; Ravazzi, Cesare; Andreoli, Carlo; Truzzi, Cristina; Lambertucci, Luca; Scarponi, Giuseppe

    2004-01-01

    During the period March 1997-March 1998 dimethyl sulphide (DMS), dimethylsulphoniopropionate (DMSP) and carbon disulphide (CS2) were determined weekly in the water of the Lagoon of Venice, Italy (at three stations located in the Giudecca Canal, the San Secondo Canal and the Rio di San Nicolò). At the same time, the following hydrological and biological variables were also measured: tide height, temperature, transmittance, fluorescence, pH, salinity, chlorinity, sulphate, ammonia, nitrite, nitrate, phosphate, silicate, chlorophyll a, phaeopigments, phytoplankton (abundance and biomass). Principal component analysis (PCA), applied as a dimension reduction tool, made it possible to summarize multivariate information in a small number of components, which highlighted the relationships between the temporal evolutions of the sulphur compounds with hydrological and biological variables in the seasonal biogeochemical cycle of the lagoon. In particular the overall temporal cycle, which begins with the development of biological activity in late winter and spring, followed by the predominance of degradation processes during the late summer and the remineralization of nutrients in autumn, is clearly described in the plane of the first two principal components, together with the interrelationships between all the relevant variables.

  16. Biogeochemical controls on Diel cycling of stable isotopes of dissolved O2 and dissolved inorganic carbon in the Big Hole River, Montana.

    PubMed

    Parker, Stephen R; Poulson, Simon R; Gammons, Christopher H; DeGrandpre, Michael D

    2005-09-15

    Rivers with high biological productivity typically show substantial increases in pH and dissolved oxygen (DO) concentration during the day and decreases at night, in response to changes in the relative rates of aquatic photosynthesis and respiration. These changes, coupled with temperature variations, may impart diel (24-h) fluctuations in the concentration of trace metals, nutrients, and other chemical species. A better understanding of diel processes in rivers is needed and will lead to improved methods of data collection for both monitoring and research purposes. Previous studies have used stable isotopes of dissolved oxygen (DO) and dissolved inorganic carbon (DIC) as tracers of geochemical and biological processes in streams, lakes, and marine systems. Although seasonal variation in 6180 of DO in rivers and lakes has been documented, no study has investigated diel changes in this parameter. Here, we demonstrate large (up to 13%o) cycles in delta18O-DO for two late summer sampling periods in the Big Hole River of southwest Montana and illustrate that these changes are correlated to variations in the DO concentration, the C-isotopic composition of DIC, and the primary productivity of the system. The magnitude of the diel cycle in delta18O-DO was greater in August versus September because of the longer photoperiod and warmer water temperatures. This study provides another biogeochemical tool for investigating the O2 and C budgets in rivers and may also be applicable to lake and groundwater systems.

  17. Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments.

    PubMed

    Nunoura, Takuro; Nishizawa, Manabu; Kikuchi, Tohru; Tsubouchi, Taishi; Hirai, Miho; Koide, Osamu; Miyazaki, Junichi; Hirayama, Hisako; Koba, Keisuke; Takai, Ken

    2013-11-01

    There has been much progress in understanding the nitrogen cycle in oceanic waters including the recent identification of ammonia-oxidizing archaea and anaerobic ammonia oxidizing (anammox) bacteria, and in the comprehensive estimation in abundance and activity of these microbial populations. However, compared with the nitrogen cycle in oceanic waters, there are fewer studies concerning the oceanic benthic nitrogen cycle. To further elucidate the dynamic nitrogen cycle in deep-sea sediments, a sediment core obtained from the Ogasawara Trench at a water depth of 9760 m was analysed in this study. The profiles obtained for the pore-water chemistry, and nitrogen and oxygen stable isotopic compositions of pore-water nitrate in the hadopelagic sediments could not be explained by the depth segregation of nitrifiers and nitrate reducers, suggesting the co-occurrence of nitrification and nitrate reduction in the shallowest nitrate reduction zone. The abundance of SSU rRNA and functional genes related to nitrification and denitrification are consistent with the co-occurrence of nitrification and nitrate reduction observed in the geochemical analyses. This study presents the first example of cooperation between aerobic and anaerobic nitrogen metabolism in the deep-sea sedimentary environments.

  18. Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments.

    PubMed

    Nunoura, Takuro; Nishizawa, Manabu; Kikuchi, Tohru; Tsubouchi, Taishi; Hirai, Miho; Koide, Osamu; Miyazaki, Junichi; Hirayama, Hisako; Koba, Keisuke; Takai, Ken

    2013-11-01

    There has been much progress in understanding the nitrogen cycle in oceanic waters including the recent identification of ammonia-oxidizing archaea and anaerobic ammonia oxidizing (anammox) bacteria, and in the comprehensive estimation in abundance and activity of these microbial populations. However, compared with the nitrogen cycle in oceanic waters, there are fewer studies concerning the oceanic benthic nitrogen cycle. To further elucidate the dynamic nitrogen cycle in deep-sea sediments, a sediment core obtained from the Ogasawara Trench at a water depth of 9760 m was analysed in this study. The profiles obtained for the pore-water chemistry, and nitrogen and oxygen stable isotopic compositions of pore-water nitrate in the hadopelagic sediments could not be explained by the depth segregation of nitrifiers and nitrate reducers, suggesting the co-occurrence of nitrification and nitrate reduction in the shallowest nitrate reduction zone. The abundance of SSU rRNA and functional genes related to nitrification and denitrification are consistent with the co-occurrence of nitrification and nitrate reduction observed in the geochemical analyses. This study presents the first example of cooperation between aerobic and anaerobic nitrogen metabolism in the deep-sea sedimentary environments. PMID:23718903

  19. Studying Microbial Mat Functioning Amidst "Unexpected Diversity": Methodological Approaches and Initial Results from Metatranscriptomes of Mats Over Diel cycles, iTags from Long Term Manipulations, and Biogeochemical Cycling in Simplified Microbial Mats Constructed from Cultures

    NASA Astrophysics Data System (ADS)

    Bebout, B.; Bebout, L. E.; Detweiler, A. M.; Everroad, R. C.; Lee, J.; Pett-Ridge, J.; Weber, P. K.

    2014-12-01

    Microbial mats are famously amongst the most diverse microbial ecosystems on Earth, inhabiting some of the most inclement environments known, including hypersaline, dry, hot, cold, nutrient poor, and high UV environments. The high microbial diversity of microbial mats makes studies of microbial ecology notably difficult. To address this challenge, we have been using a combination of metagenomics, metatranscriptomics, iTags and culture-based simplified microbial mats to study biogeochemical cycling (H2 production, N2 fixation, and fermentation) in microbial mats collected from Elkhorn Slough, Monterey Bay, California. Metatranscriptomes of microbial mats incubated over a diel cycle have revealed that a number of gene systems activate only during the day in Cyanobacteria, while the remaining appear to be constitutive. The dominant cyanobacterium in the mat (Microcoleus chthonoplastes) expresses several pathways for nitrogen scavenging undocumented in cultured strains, as well as the expression of two starch storage and utilization cycles. Community composition shifts in response to long term manipulations of mats were assessed using iTags. Changes in community diversity were observed as hydrogen fluxes increased in response to a lowering of sulfate concentrations. To produce simplified microbial mats, we have isolated members of 13 of the 15 top taxa from our iTag libraries into culture. Simplified microbial mats and simple co-cultures and consortia constructed from these isolates reproduce many of the natural patterns of biogeochemical cycling in the parent natural microbial mats, but against a background of far lower overall diversity, simplifying studies of changes in gene expression (over the short term), interactions between community members, and community composition changes (over the longer term), in response to environmental forcing.

  20. The Influence of Hurricanes and Other Biogeochemical Factors on Net Mercury Methylation and Mercury Cycling in the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Mason, R.; Bank, M.; Hollweg, T.; Liu, B.; Rabalais, N.; Schaider, L.; Senn, D.; Shine, J.; Swarzenski, P.

    2007-12-01

    Methylation of mercury (Hg) in coastal region sediments is a potentially important source of methylmercury (MeHg) to ocean food webs. Sediment Hg studies in the coastal zone have focused mostly on biogeochemical relationships but have not studied in detail the impact of extreme events, such as hurricanes, on Hg dynamics. As a result of two funded studies, samples were collected at a number of stations in July and October 2005 and March and July 2006 in the Gulf region, and covering locations impacted by both Hurricanes Katrina and Rita. Some locations are also impacted by seasonal hypoxia. Sediment cores were analyzed for total Hg, MeHg, and ancillary variables, and were also dated using various proxies. Rates of methylation (km) and demethylation (kd) were also estimated using stable isotopes of Hg and MeHg. Typical relationships were found for bulk sediment parameters, and for dissolved-particulate partitioning and these relationships will be discussed. The impact of the hurricane disturbance was clearly evident from large differences before and after in the sediment profiles of Hg, MeHg, sediment organic matter content (TOC) and other bulk elemental concentrations, as measured by XRF. Additionally, measurements of radiotracer distributions (7Be, 210Pb), from this and other studies confirm the substantial redistribution of sediments as a result of the hurricanes. Hurricane disturbances appear to have stimulated net Hg methylation by increasing the methylation rate and depressing the demethylation rate, and as evidenced by the higher %MeHg, at the highly disturbed sites. Our results also suggest there has been a further redistribution of sediments post-hurricanes. In total, we estimate that the amount of Hg moved and redistributed as a result of the hurricanes was substantially greater than the yearly input of Hg from the Mississippi/Atchalfalaya rivers and the atmosphere. This redistribution suggests that historically deposited Hg needs to be considered when

  1. Diel biogeochemical processes and their effect on the aqueous chemistry of streams: A review

    USGS Publications Warehouse

    Nimick, David A.; Gammons, Christopher H.; Parker, Stephen R.

    2011-01-01

    This review summarizes biogeochemical processes that operate on diel, or 24-h, time scales in streams and the changes in aqueous chemistry that are associated with these processes. Some biogeochemical processes, such as those producing diel cycles of dissolved O2 and pH, were the first to be studied, whereas processes producing diel concentration cycles of a broader spectrum of chemical species including dissolved gases, dissolved inorganic and organic carbon, trace elements, nutrients, stable isotopes, and suspended particles have received attention only more recently. Diel biogeochemical cycles are interrelated because the cyclical variations produced by one biogeochemical process commonly affect another. Thus, understanding biogeochemical cycling is essential not only for guiding collection and interpretation of water-quality data but also for geochemical and ecological studies of streams. Expanded knowledge of diel biogeochemical cycling will improve understanding of how natural aquatic environments function and thus lead to better predictions of how stream ecosystems might react to changing conditions of contaminant loading, eutrophication, climate change, drought, industrialization, development, and other factors.

  2. Genetic and biogeochemical investigation of sedimentary nitrogen cycling communities responding to tidal and seasonal dynamics in Cape Fear River Estuary

    NASA Astrophysics Data System (ADS)

    Lisa, Jessica A.; Song, Bongkeun; Tobias, Craig R.; Hines, David E.

    2015-12-01

    Tidal and seasonal fluctuations in the oligohaline reaches of estuaries may alter geochemical features that influence structure and function of microbial communities involved in sedimentary nitrogen (N) cycling. In order to evaluate sediment community responses to short-term (tidal) and long-term (seasonal) changes in different tidal regimes, nitrogen cycling rates and genes were quantified in three sites that span a range of tidal influence in the upper portion of the Cape Fear River Estuary. Environmental parameters were monitored during low and high tides in winter and spring. 15N tracer incubation experiments were conducted to measure nitrification, denitrification, anaerobic ammonium oxidation (anammox), and dissimilatory nitrate reduction to ammonia (DNRA). Abundances of functional genes including bacterial and archaeal ammonia monooxygenase (amoA), nitrite reductases (nirS and nrfA), nitrous oxide reductase (nosZ), and hydrazine oxidoreductase (hzo) were measured using quantitative PCR assays. Denitrification rates were highest among the measured N cycling processes while bacteria carrying nrfA genes were most abundant. A discernable pattern in the short-term variation of N cycling rates and gene abundance was not apparent under the different tidal regimes. Significant seasonal variation in nitrification, denitrification, and anammox rates as well as bacterial amoA, nirS and nosZ gene abundance was observed, largely explained by increases in substrate availability during winter, with sediment ammonium playing a central role. These results suggest that the coupling of nitrification to N removal pathways is primarily driven by organic carbon mineralization and independent of tidal or salinity changes. Finally, changes in denitrification and nitrification activities were strongly reflected by the abundance of the respective functional genes, supporting a linkage between the structure and function of microbial communities.

  3. Long-term increase in mesozooplankton biomass in the Sargasso Sea: Linkage to climate and implications for food web dynamics and biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Steinberg, Deborah K.; Lomas, Michael W.; Cope, Joseph S.

    2012-03-01

    Changes in zooplankton biomass and species composition over long time scales can have significant effects on biogeochemical cycling and transfer of energy to higher trophic levels. We analyzed size-fractionated mesozooplankton biomass (>200μm) from biweekly to monthly day and night tows taken from 1994 to 2010 in the epipelagic zone at the Bermuda Atlantic Time series Study (BATS) site in the oligotrophic North Atlantic subtropical gyre. During this 17-year period total mesozooplankton biomass increased 61% overall, although a few short-term downturns occurred over the course of the time series. The overall increase was higher in the nighttime compared to daytime, resulting in an increase in calculated diel vertical migrator biomass. The largest seasonal increase in total biomass was in the late-winter to spring (February-April). Associated with the larger increase in late-winter/spring biomass was a shift in the timing of annual peak biomass during the latter half of the time series (from March/April to a distinct March peak for all size fractions combined, and April to March for the 2-5 mm size fractions). Zooplankton biomass was positively correlated with sea-surface temperature, water column stratification, and primary production, and negatively correlated with mean temperature between 300 and 600 m. Significant correlations exist between multidecadal climate indices-the North Atlantic Oscillation plus three different Pacific Ocean climate indices, and BATS zooplankton biomass, indicating connections between patterns in climate forcing and ecosystem response. Resultant changes in biogeochemical cycling include an increase in the magnitude of both active carbon flux by diel vertical migration and passive carbon flux of fecal pellets as components of the export flux. The most likely mechanism driving the zooplankton biomass increase is bottom-up control by smaller phytoplankton, which has also increased in biomass and production at BATS, translating up the

  4. Metagenomics, single cell genomics, and steady-state free energy flux provide insight into the biogeochemical cycling of deep, meteoric water

    NASA Astrophysics Data System (ADS)

    Magnabosco, C.; Lau, C. M.; Ryan, K.; Kieft, T. L.; Snyder, L.; Sherwood Lollar, B.; Lacrampe Couloume, G.; Hendrickson, S.; Pullin, M. J.; Slater, G. F.; Simkus, D.; Borgonie, G.; van Heerden, E.; Kuloyo, O.; Maleke, M.; Tlalajoe, T.; Vermeulen, J.; Vermeulen, F.; Munro, A.; Pienaar, M.; Stepanauskas, R.; Grim, S. L.; Onstott, T. C.

    2013-12-01

    Prior to the onset of high-throughput sequencing, the study of biogeochemical cycling in the terrestrial deep subsurface was limited to geochemical, thermodynamic, culture dependent microbial and low-throughput molecular analyses. Here, we present an integration of these traditional methods with high-throughput metagenomic and single cell analysis of 3.1 km deep water collected from a borehole (TT107) located in AngloGold Ashanti's TauTona Au Mine of South Africa and intersecting a fracture within a Witwatersrand Supergroup quartzite. The low salinity fracture water encountered at this depth is meteoric in origin and has a subsurface residence time on the order of a few thousand years. Aqueous geochemistry and estimated steady-state free energy flux values suggest that redox reactions are driven by the oxidation of abundant, energy-rich substrates including H2, CO, CH4, formate, and propanoate. The majority of the metagenome's sequences related to the phyla Firmicutes and Proteobacteria, which contain several bacterial species that are likely to exhibit chemoautotrophic metabolism. Sequence data confirms that many of these bacteria have the ability reduce of sulfur and nitrogen species via dissimilatory pathways. Thermincola were the most abundant firmicutes at this location and were sequenced at the single cell level. Notably, Thermincola sp. are capable of reducing metals and may utilize energy rich manganese reduction pathways at TT107. The CH4 at this site is of abiological origin (δ13C-C1-3 = -43.5 to -44.3 VPDB; δ2H-C1-3 = -345 to -200 VSMOW) despite the metagenome containing several sequences that are closely related to methanogens in the archaeal phyla Euryarchaeota. Alternatively, these archaea may belong to a group of euryarchaetoa commonly referred to as anaerobic mehanotrophic archaea (ANME) - suggesting that anaerobic oxidation (AOM) of abiogenic CH4 coupled to the reduction of sulfate species may be occurring at this site. Sequences for pmoA and s

  5. Microbial Carbon Cycling in Permafrost-Affected Soils

    SciTech Connect

    Vishnivetskaya, T.; Liebner, Susanne; Wilhelm, Ronald; Wagner, Dirk

    2011-01-01

    The Arctic plays a key role in Earth s climate system as global warming is predicted to be most pronounced at high latitudes and because one third of the global carbon pool is stored in ecosystems of the northern latitudes. In order to improve our understanding of the present and future carbon dynamics in climate sensitive permafrost ecosystems, present studies concentrate on investigations of microbial controls of greenhouse gas fluxes, on the activity and structure of the involved microbial communities, and on their response to changing environmental conditions. Permafrost-affected soils can function as both a source and a sink for carbon dioxide and methane. Under anaerobic conditions, caused by flooding of the active layer and the effect of backwater above the permafrost table, the mineralization of organic matter can only be realized stepwise by specialized microorganisms. Important intermediates of the organic matter decomposition are hydrogen, carbon dioxide and acetate, which can be further reduced to methane by methanogenic archaea. Evolution of methane fluxes across the subsurface/atmosphere boundary will thereby strongly depend on the activity of anaerobic methanogenic archaea and obligately aerobic methane oxidizing proteobacteria, which are known to be abundant and to significantly reduce methane emissions in permafrost-affected soils. Therefore current studies on methane-cycling microorganisms are the object of particular attention in permafrost studies, because of their key role in the Arctic methane cycle and consequently of their significance for the global methane budget.

  6. A Conceptual Model of Coupled Biogeochemical and Hydrogeological Processes Affected by In Situ Cr(VI) Bioreduction in Groundwater at Hanford 100H Site

    NASA Astrophysics Data System (ADS)

    Faybishenko, B.; Long, P. E.; Hazen, T. C.; Hubbard, S. S.; Williams, K. H.; Peterson, J. E.; Chen, J.; Volkova, E. V.; Newcomer, D. R.; Resch, C. T.; Cantrell, K.; Conrad, M. S.; Brodie, E. L.; Joyner, D. C.; Borglin, S. E.; Chakraborty, R. C.

    2007-05-01

    The overall objective of this presentation is to demonstrate a conceptual multiscale, multidomain model of coupling of biogeochemical and hydrogeological processes during bioremediation of Cr(VI) contaminated groundwater at Hanford 100H site. A slow release polylactate, Hydrogen Release Compound (HRCTM), was injected in Hanford sediments to stimulate immobilization of Cr(VI). The HRC injection induced a 2-order-of- magnitude increase in biomass and the onset of reducing biogeochemical conditions [e.g., redox potential decreased from +240 to -130 mV and dissolved oxygen (DO) was completely removed]. A three-well system, comprised of an injection well and upgradient and downgradient monitoring wells, was used for conducting the in situ biostimulation, one regional flow (no-pumping) tracer test, and five pumping tests along with the Br-tracer injection. Field measurements were conducted using a Br ion-selective electrode and a multiparameter flow cell to collect hourly data on temperature, pH, redox potential, electrical conductivity, and DO. Groundwater sampling was conducted by pumping through specially designed borehole water samplers. Cross-borehole radar tomography and seismic measurements were carried out to assess the site background lithological heterogeneity and the migration pathways of HRC byproducts through groundwater after the HRC injection. Several alternative approaches, including conventional and fractional advective dispersion equations and geostatistical analysis, were used to characterize hydraulic and biogeochemical transport parameters. The results of a joint inversion of cross-borehole geophysical tomography and flow-rate measurements in boreholes indicate the presence of a bimodal distribution of hydraulic conductivity for Hanford sediments. The Br- concentration double-peak BTCs curves indicate that HRC injection caused an increase in the tracer travel time (mainly in the low-permeability zone) over the period of observations of about 2 years

  7. The biogeochemical cycling of trace metals in the water column of Lake Sammamish, Washington: response to seasonally anoxic conditions

    USGS Publications Warehouse

    Balistrieri, L.S.; Murray, J.W.; Paul, B.

    1992-01-01

    Spatial and temporal changes in the redox conditions of the bottom waters result in increases in dissolved Co and Ni concentrations, peaks in particulate Co profiles, decreases in dissolved Cu and Cr concentrations, and significant changes in dissolved metal speciation during stagnation. The redox-driven cycling of Fe and Mn in the hypolimnion has a dramatic effect on Co disturbutions, a slight effect on Ni concentrations, and virtually no effect on Cd, Cu, Cr, and Zn concentrations. Biological uptake and regeneration processes result in a correlation between Zn and silicate concentrations throughout the water column, and it appears that biological cycling may also influence the distribution of Cd. During the sulfidic phase of stagnation dissolved Cd concentrations in the bottom-waters may be controlled by metal-sulfide precipitation, Cr(VI) is probably reduced to more particle-reactive Cr(III) and removed by settling particles, and Cu(II) is most likely reduced to Cu(I) and precipitated as a metal-sulfide phase. -from Authors

  8. The biogeochemical footprint of agricultural soil erosion

    NASA Astrophysics Data System (ADS)

    Govers, Gerard; Van Oost, Kristof; Wang, Zhengang

    2015-04-01

    Global biogeochemical cycles are a key component of the functioning of the Earth System: these cycles are all, to a varying extent, disturbed by human activities which not only has dramatic consequences for the global climate but also for the acidity of the world's oceans. It is only relatively recently that the role of lateral fluxes related to surface water movement and soil erosion and deposition (and the way those fluxes are modified by human action) is explicitly considered by the scientific community. In this paper we present an overview of our present-day understanding of the role of agricultural soil erosion in the global cycles of carbon, nitrogen, phosphorous and silica. We discuss the major processes through which erosion affects these global cycles and pay particular attention to the knowledge gaps that prevent us from accurately assessing the impact of soil erosion on global biogeochemical cycling at different temporal scales. Furthering our understanding (and better constraining our estimates) will require progress both in terms of model development and process understanding. Research needs can be most clearly identified with respect to soil organic carbon: (i) at present, large-scale soil erosion (and deposition) models are poorly constrained so that the amount of carbon mobilised by erosion (and its fate) cannot be accurately estimated and (ii) the fate of soil organic carbon buried by deposition or delivered to river network is poorly understood. Uncertainties for N, P and Si are larger than those for C as we have less information on the amount of these elements stored in agricultural soils and/or do not fully understand how these elements cycle through the soil/plant system. Agricultural soil erosion does not affect soil functioning through its effect on biogeochemical cycling. Erosion directly affects soil hydrological functioning and is likely to affect weathering processes and soil production. Addressing all these issues requires the

  9. FeCycle: Attempting an iron biogeochemical budget from a mesoscale SF6 tracer experiment in unperturbed low iron waters

    NASA Astrophysics Data System (ADS)

    Boyd, P. W.; Law, C. S.; Hutchins, D. A.; Abraham, E. R.; Croot, P. L.; Ellwood, M.; Frew, R. D.; Hadfield, M.; Hall, J.; Handy, S.; Hare, C.; Higgins, J.; Hill, P.; Hunter, K. A.; Leblanc, K.; Maldonado, M. T.; McKay, R. M.; Mioni, C.; Oliver, M.; Pickmere, S.; Pinkerton, M.; Safi, K.; Sander, S.; Sanudo-Wilhelmy, S. A.; Smith, M.; Strzepek, R.; Tovar-Sanchez, A.; Wilhelm, S. W.

    2005-12-01

    An improved knowledge of iron biogeochemistry is needed to better understand key controls on the functioning of high-nitrate low-chlorophyll (HNLC) oceanic regions. Iron budgets for HNLC waters have been constructed using data from disparate sources ranging from laboratory algal cultures to ocean physics. In summer 2003 we conducted FeCycle, a 10-day mesoscale tracer release in HNLC waters SE of New Zealand, and measured concurrently all sources (with the exception of aerosol deposition) to, sinks of iron from, and rates of iron recycling within, the surface mixed layer. A pelagic iron budget (timescale of days) indicated that oceanic supply terms (lateral advection and vertical diffusion) were relatively small compared to the main sink (downward particulate export). Remote sensing and terrestrial monitoring reveal 13 dust or wildfire events in Australia, prior to and during FeCycle, one of which may have deposited iron at the study location. However, iron deposition rates cannot be derived from such observations, illustrating the difficulties in closing iron budgets without quantification of episodic atmospheric supply. Despite the threefold uncertainties reported for rates of aerosol deposition (Duce et al., 1991), published atmospheric iron supply for the New Zealand region is ˜50-fold (i.e., 7- to 150-fold) greater than the oceanic iron supply measured in our budget, and thus was comparable (i.e., a third to threefold) to our estimates of downward export of particulate iron. During FeCycle, the fluxes due to short term (hours) biological iron uptake and regeneration were indicative of rapid recycling and were tenfold greater than for new iron (i.e. estimated atmospheric and measured oceanic supply), giving an "fe" ratio (uptake of new iron/uptake of new + regenerated iron) of 0.17 (i.e., a range of 0.06 to 0.51 due to uncertainties on aerosol iron supply), and an "Fe" ratio (biogenic Fe export/uptake of new + regenerated iron) of 0.09 (i.e., 0.03 to 0.24).

  10. Phytoplankton versus macrophyte contribution to primary production and biogeochemical cycles of a coastal mesotidal system. A modelling approach

    NASA Astrophysics Data System (ADS)

    Plus, M.; Auby, I.; Maurer, D.; Trut, G.; Del Amo, Y.; Dumas, F.; Thouvenin, B.

    2015-11-01

    This study presents an assessment of the contributions of various primary producers to the global annual production and N/P cycles of a coastal system, namely the Arcachon Bay, by means of a numerical model. This 3D model fully couples hydrodynamic with ecological processes and simulates nitrogen, silicon and phosphorus cycles as well as phytoplankton, macroalgae and seagrasses. Total annual production rates for the different components were calculated for different years (2005, 2007 and 2009) during a time period of drastic reduction in seagrass beds since 2005. The total demand of nitrogen and phosphorus was also calculated and discussed with regards to the riverine inputs. Moreover, this study presents the first estimation of particulate organic carbon export to the adjacent open ocean. The calculated annual net production for the Arcachon Bay (except microphytobenthos, not included in the model) ranges between 22,850 and 35,300 tons of carbon. The main producers are seagrasses in all the years considered with a contribution ranging from 56% to 81% of global production. According to our model, the -30% reduction in seagrass bed surface between 2005 and 2007, led to an approximate 55% reduction in seagrass production, while during the same period of time, macroalgae and phytoplankton enhanced their productions by about +83% and +46% respectively. Nonetheless, the phytoplankton production remains about eightfold higher than the macroalgae production. Our results also highlight the importance of remineralisation inside the Bay, since riverine inputs only fulfill at maximum 73% nitrogen and 13% phosphorus demands during the years 2005, 2007 and 2009. Calculated advection allowed a rough estimate of the organic matter export: about 10% of the total production in the bay was exported, originating mainly from the seagrass compartment, since most of the labile organic matter was remineralised inside the bay.

  11. Astronomical Forcing of Salt Marsh Biogeochemical Cascades

    NASA Astrophysics Data System (ADS)

    Morris, J. T.; Sundberg, K.

    2008-12-01

    Astronomically forced changes in the hydroperiod of a salt marsh affect the rate of marsh primary production leading to a biogeochemical cascade. For example, salt marsh primary production and biogeochemical cycles in coastal salt marshes are sensitive to the 18.6-year lunar nodal cycle, which alters the tidal amplitude by about 5 cm. For marshes that are perched high in the tidal frame, a relatively small increase in tidal amplitude and flooding lowers sediment salinity and stimulates primary production. Porewater sulfide concentrations are positively correlated with tidal amplitude and vary on the same cycle as primary production. Soluble reactive phosphate and ammonium concentrations in pore water also vary on this 18.6- year cycle. Phosphate likely responds to variation in the reaction of sulfide with iron-phosphate compounds, while the production of ammonium in sediments is coupled to the activity of diazotrophs that are carbon- limited and, therefore, are regulated by primary productivity. Ammonium also would accumulate when sulfides block nitrification. These dependencies work as a positive feedback between primary production and nutrient supply and are predictive of the near-term effects of sea-level rise.

  12. Molecular evidence for microorganisms participating in Fe, Mn, and S biogeochemical cycling in two low-temperature hydrothermal fields at the Southwest Indian Ridge

    NASA Astrophysics Data System (ADS)

    Li, Jiwei; Peng, Xiaotong; Zhou, Huaiyang; Li, Jiangtao; Sun, Zhilei

    2013-06-01

    We examined two low-temperature hydrothermal deposits rich in Fe-Si-Mn collected from the recently discovered hydrothermal fields at the Southwest Indian Ridge using mineralogical, geochemical, and molecular biological techniques. The mineralogical and geochemical analyses indicated that the low-temperature hydrothermal fields would provide a warm and chemical species-rich habitat for chemosynthetic-based hydrothermal ecosystems. Analyses of 16S rRNA sequences showed that ζ-Proteobacteria, Pseudoalteromonas, Leptothrix, and Pseudomonas were potential Fe and Mn oxidizers in the low-temperature hydrothermal environments, but they were not present in equal abundance among the subniches. Some potential Fe and Mn reducers were also recovered; they were more commonly found in the exterior black Fe-Mn oxides. The difference between the exterior black Fe-Mn oxides and the interior Opal-A could be related to differences in in situ physicochemical conditions. We also identified microbial players that may participate in sulfur (S) geochemical cycling in these low-temperature hydrothermal environments via analyses of 16S rRNA sequences and the aprA functional gene. The results indicated that members of γ-Proteobacteria and α-Proteobacteria were involved in the S oxidation process, while members of δ-Proteobacteria, Nitrospirae, Firmicutes, and Archaea might participate in the S reduction process. Fe, Mn, and S oxidizers and reducers might actively participate in hydrothermal biogeochemical processes, which could influence the transfer of chemical species and the formation of biogenic minerals.

  13. Contribution of phytoliths to total biogenic silica volumes in the tropical rivers of Malaysia and associated implications for the marine biogeochemical cycle

    NASA Astrophysics Data System (ADS)

    Zang, Jiaye; Liu, Sen; Liu, Yanguang; Ma, Yongxing; Ran, Xiangbin

    2016-09-01

    The contribution of phytoliths to total biogenic silica (BSi) volumes in rivers worldwide, and the associated implications for the biogeochemical cycle, require in-depth study. Based on samples from rivers in Peninsular Malaysia, this project investigated the source and characteristics of BSi found in Asian tropical rivers, as well as the process of reverse weathering taking place in these fluvial systems. Results indicated that BSi samples collected in sediments consisted of phytolith, diatom and sponge spicules. Phytoliths, predominantly of the elongate form, comprised 92.8%-98.3% of BSi in the Pahang River. Diatom BSi in this river consisted mainly of pennatae diatoms, but represented a relatively small proportion of the total BSi volume. However, diatom BSi (predominantly of the Centricae form) was more prevalent in the Pontian and Endau Rivers with shares of 68.8% and 79.3% of the total BSi volumes, respectively, than Pahang River. Carbon contents of the BSi particulates ranged from 1.85% to 10.8% with an average of 4.79%. These values are higher than those recorded in other studies to date, and indicate that BSi plays a major role in controlling permanent carbon burial. This study suggests that phytoliths from terrestrial plants are the primary constituents of BSi in the rivers of Peninsular Malaysia, and therefore represent a significant proportion of the coastal silica budget.

  14. Impact of vegetation and ecosystems on chlorine(-36) cycling and its modeling: from simplified approaches towards more complex biogeochemical tools

    NASA Astrophysics Data System (ADS)

    Thiry, Yves; Redon, Paul-Olivier; Gustafsson, Malin; Marang, Laura; Bastviken, David

    2013-04-01

    Chlorine is very soluble at a global scale with chloride (Cl-), the dominating form. Because of its high mobility, chlorine is usually perceived as a good conservative tracer in hydrological studies and by analogy as little reactive in biosphere. Since 36Cl can be considered to have the same behaviour than stable Cl, a good knowledge of chlorine distribution between compartments of terrestrial ecosystems is sufficient to calibrate a specific activity model which supposes rapid dilution of 36Cl within the large pool of stable Cl and isotopic equilibrium between compartments. By assuming 36Cl redistribution similar to that of stable Cl at steady-state, specific activity models are simplified interesting tools for regulatory purposes in environmental safety assessment, especially in case of potential long term chronic contamination of agricultural food chain (IAEA, 2010). In many other more complex scenarios (accidental acute release, intermediate time frame, and contrasted natural ecosystems), new information and tools are necessary for improving (radio-)ecological realism, which entails a non-conservative behavior of chlorine. Indeed observed dynamics of chlorine in terrestrial ecosystems is far from a simple equilibrium notably because of natural processes of organic matter (SOM) chlorination mainly occurring in surface soils (Öberg, 1998) and mediated by microbial activities on a large extent (Bastviken et al. 2007). Our recent studies have strengthened the view that an organic cycle for chlorine should now be recognized, in addition to its inorganic cycle. Major results showed that: organochlorine (Clorg) formation occurs in all type of soils and ecosystems (culture, pasture, forest), leading to an average fraction of the total Cl pool in soil of about 80 % (Redon et al., 2012), chlorination in more organic soils over time leads to a larger Clorg pool and in turn to a possible high internal supply of inorganic chlorine (Clin) upon dechlorination. (Gustafsson et

  15. Renewable Energy Production and Urban Remediation: Modeling the biogeochemical cycle at contaminated urban brownfields and the potential for renewable energy production and mitigation of greenhouse gases

    NASA Astrophysics Data System (ADS)

    Gopalakrishnan, G.

    2014-12-01

    Brownfields or urban sites that have been contaminated as a result of historic practices are present throughout the world. In the United States alone, the National Research Council has estimated that there are approximately 300,000 to 400,000 sites which have been contaminated by improper use and disposal of chemicals (NRC 1993). The land available at these sites is estimated at several million acres; however, the presence of high levels of contamination in the soil and groundwater makes it difficult to utilize these sites for traditional purposes such as agriculture. Further, the time required to remediate these contaminants to regulated levels is in the order of decades, which often results in long-term economic consequences for the areas near these sites. There has been significant interest in developing these sites as potential sources of renewable energy production in order to increase the economic viability of these sites and to provide alternative land resources for renewable energy production (EPA 2012). Solar energy, wind energy, and bioenergy from lignocellulosic biomass production have been identified as the main sources of renewable energy that can be produced at these locations. However, the environmental impacts of such a policy and the implications for greenhouse gas emissions, particularly resulting from changes in land-use impacting the biogeochemical cycle at these sites, have not been studied extensively to date. This study uses the biogeochemical process-based model DNDC to simulate carbon sequestration, nitrous oxide emissions and methane emissions from typical urban brownfield systems in the United States, when renewable energy systems are deployed. Photovoltaic solar energy and lignocellulosic biomass energy systems are evaluated here. Plants modeled include those most widely used for both bioenergy and remediation such as woody trees. Model sensitivity to soil conditions, contaminant levels and local weather data and the resulting impacts on

  16. Annual cycles of deep-ocean biogeochemical export fluxes in subtropical and subantarctic waters, southwest Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Nodder, Scott D.; Chiswell, Stephen M.; Northcote, Lisa C.

    2016-04-01

    The annual cycles of particle fluxes derived from moored sediment trap data collected during 2000-2012 in subtropical (STW) and subantarctic waters (SAW) east of New Zealand are presented. These observations are the most comprehensive export flux time series from temperate Southern Hemisphere latitudes to date. With high levels of variability, fluxes in SAW were markedly lower than in STW, reflecting the picophytoplankton-dominated communities in the iron-limited, high nutrient-low chlorophyll SAW. Austral spring chlorophyll blooms in surface STW were near synchronous with elevated fluxes of bio-siliceous, carbonate, and organic carbon-rich materials to the deep ocean, probably facilitated by diatom and/or coccolithophorid sedimentation. Lithogenic fluxes were also high in STW, compared to SAW, reflecting proximity to the New Zealand landmass. In contrast, the highest biogenic fluxes in SAW occurred in spring when surface chlorophyll concentrations were low, while highest annual chlorophyll concentrations were in summer with no associated flux increase. We hypothesize that the high spring export in SAW results from subsurface chlorophyll accumulation that is not evident from remote-sensing satellites. This material was also rich in biogenic silica, perhaps related to the preferential export of diatoms and other silica-producing organisms, such as silicoflagellates and radiolarians. Organic carbon fluxes in STW are similar to that of other mesotrophic to oligotrophic waters (˜6-7 mg C m-2 d-1), whereas export from SAW is below the global average (˜3 mg C m-2 d-1). Regional differences in flux across the SW Pacific and Tasman region reflect variations in physical processes and ecosystem structure and function.

  17. Dissolved Silver in Marine Waters: Reviewing Three Decades of Advances in Analytical Techniques and Understanding its Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Ndungu, K.; Flegal, A. R., Jr.

    2015-12-01

    Although billions of dollars have been spent over the past half-century to reduce contamination of U.S. waters, quantifying parts-per-billion reductions in surface water concentration since has been relatively unsuccessful. The reasons for the failure in identifying the benefits of these remediative efforts include: (i) historic (pre-1980) problems in accurately sampling and analyzing trace element concentrations at parts-per-billion level, so that temporal reductions in trace metal contamination reflected improved sampling and analytical accuracy rather than real decreases in those concentrations; (ii) limited seasonal and long term research. Silver in its ionic form is more toxic to aquatic organisms than any other metal except Hg. Because Ag is not common naturally in the environment, its elevated presence in water, sediment or biological tissues is usually indicative of anthropogenic influences. However, there is very little published data on Ag levels in both water and sediment. The published studies include Ag levels in a few U.S. estuarine waters, including detailed and time series studies for the San Francisco Estuary system by the WIGS lab at UC Santa Cruz. In the open Ocean, Ag measurements are limited to a few studies in the North and South Pacific, The North and South Atlantic. However, as Gallon and Flegal recently noted, there is no available data on Ag concentrations from the Indian Ocean! Most of the dissolved Ag data from the Atlantic was made in WIGS lab at UC Santa Cruz Analytical determination of Ag in seawater has come a long way since Murozumi reported the first dissolved Ag measurements from the N. Pacific in 1981 using isotope dilution MS after solvent extraction. In this presentation I will review analytical developments for Ag determination in the last three decades. I will also highlight the missing data gaps and present new tentative data on dissolved Ag concentration and cycling in polar regions including the Antarctic (Amundsen Sea

  18. Future changes in climate, ocean circulation, ecosystems, and biogeochemical cycling simulated for a business-as-usual CO2 emission scenario until year 4000 AD

    NASA Astrophysics Data System (ADS)

    Schmittner, Andreas; Oschlies, Andreas; Matthews, H. Damon; Galbraith, Eric D.

    2008-03-01

    A new model of global climate, ocean circulation, ecosystems, and biogeochemical cycling, including a fully coupled carbon cycle, is presented and evaluated. The model is consistent with multiple observational data sets from the past 50 years as well as with the observed warming of global surface air and sea temperatures during the last 150 years. It is applied to a simulation of the coming two millennia following a business-as-usual scenario of anthropogenic CO2 emissions (SRES A2 until year 2100 and subsequent linear decrease to zero until year 2300, corresponding to a total release of 5100 GtC). Atmospheric CO2 increases to a peak of more than 2000 ppmv near year 2300 (that is an airborne fraction of 72% of the emissions) followed by a gradual decline to ˜1700 ppmv at year 4000 (airborne fraction of 56%). Forty-four percent of the additional atmospheric CO2 at year 4000 is due to positive carbon cycle-climate feedbacks. Global surface air warms by ˜10°C, sea ice melts back to 10% of its current area, and the circulation of the abyssal ocean collapses. Subsurface oxygen concentrations decrease, tripling the volume of suboxic water and quadrupling the global water column denitrification. We estimate 60 ppb increase in atmospheric N2O concentrations owing to doubling of its oceanic production, leading to a weak positive feedback and contributing about 0.24°C warming at year 4000. Global ocean primary production almost doubles by year 4000. Planktonic biomass increases at high latitudes and in the subtropics whereas it decreases at midlatitudes and in the tropics. In our model, which does not account for possible direct impacts of acidification on ocean biology, production of calcium carbonate in the surface ocean doubles, further increasing surface ocean and atmospheric pCO2. This represents a new positive feedback mechanism and leads to a strengthening of the positive interaction between climate change and the carbon cycle on a multicentennial to millennial

  19. A one year post-fire biogeochemical cycling record of a sandstone mountain fynbos ecosystem, South Africa

    NASA Astrophysics Data System (ADS)

    Bergh, E.; Compton, J. S.

    2012-04-01

    The Cape Floristic Region (CFR) in southwestern South Africa is a Mediterranean-type ecosystem dominated by highly diverse and endemic fynbos vegetation. In this study, the chemistry of rainwater (total wet and dry deposition), stream water and soil saturated paste extracts of the sandstone fynbos biome of the Kogelberg Biosphere Reserve reveals how the cycling of Cl, Na, SO4,Mg, Ca and K varied over a one year period following a major fire event. Fire is a critical component of fynbos ecology, but the fynbos ecosystem is under threat as the fire return frequency increases as a result of human activities. The underlying bedrock geology of the sandstone fynbos biome is dominated by quartz-rich (>97 wt% SiO2) sandstone providing few nutrients to the overlying thin (2 to 20 cm), acidic soils. Additional sources of nutrients to the ecosystem are derived from windblown marine and dust (consisting of minerals, organic matter and fire ash) aerosols. Rainout of marine aerosols decreases away from the coast. The delivery of marine aerosols (Cl, Na, SO4and Mg) corresponds with summer southerly winds from the ocean and windblown dust (SO4,Mg, Ca and K) is delivered through winter northerly winds from the continental interior. Remineralization of organic matter, dissolution of fire ash and chemical weathering of clay minerals derived from the bedrock and from windblown minerals provide additional sources of nutrients to the vegetation. Salts accumulated within and on top of soil surfaces during the dry summer period are washed into streams during the wet winter months. Afromontane forests occur within deep rocky ravines cut by mountain streams and are protected from fire. The afromontane vegetation did not burn during the fire and benefited from the release of nutrients but regrowth of fynbos on open burnt slopes was slow and most of the released nutrients were lost via streams. Fynbos regrowth largely reflected the hydrology of the study area and corresponded to the pre

  20. Multicompartment ecosystem mass balances as a tool for understanding and managing the biogeochemical cycles of human ecosystems.

    PubMed

    Baker, L A; Hope, D; Xu, Y; Edmonds, J

    2001-10-09

    Nitrogen remains a ubiquitous pollutant in surface and groundwater throughout the United States, despite 30 years of pollution control efforts. A detailed multicompartment N balance for the Central Arizona-Phoenix ecosystem is used to illustrate how an ecosystem-level approach can be used to develop improved N management strategies. The N balance is used to demonstrate how nitrate in pumped groundwater used for crop irrigation could be used to reduce inputs of commercial fertilizer and decrease N leaching to aquifers. Effectively managing N pollution also will require an understanding of the complex factors that control the N balance, including targeted regulations, individual human behavior, land-use conversion, and other ecosystem management practices that affect the N balance. These sometimes countervailing factors are illustrated with several scenarios of wastewater treatment technology and population growth in the Phoenix area. Management of N eventually must be coupled to management of other elements, notably carbon, phosphorus, and salts. We postulate that an ecosystem framework for pollution management will result in strategies that are more effective, fairer, and less expensive than current approaches.

  1. Resource quality affects carbon cycling in deep-sea sediments

    PubMed Central

    Mayor, Daniel J; Thornton, Barry; Hay, Steve; Zuur, Alain F; Nicol, Graeme W; McWilliam, Jenna M; Witte, Ursula F M

    2012-01-01

    Deep-sea sediments cover ∼70% of Earth's surface and represent the largest interface between the biological and geological cycles of carbon. Diatoms and zooplankton faecal pellets naturally transport organic material from the upper ocean down to the deep seabed, but how these qualitatively different substrates affect the fate of carbon in this permanently cold environment remains unknown. We added equal quantities of 13C-labelled diatoms and faecal pellets to a cold water (−0.7 °C) sediment community retrieved from 1080 m in the Faroe-Shetland Channel, Northeast Atlantic, and quantified carbon mineralization and uptake by the resident bacteria and macrofauna over a 6-day period. High-quality, diatom-derived carbon was mineralized >300% faster than that from low-quality faecal pellets, demonstrating that qualitative differences in organic matter drive major changes in the residence time of carbon at the deep seabed. Benthic bacteria dominated biological carbon processing in our experiments, yet showed no evidence of resource quality-limited growth; they displayed lower growth efficiencies when respiring diatoms. These effects were consistent in contrasting months. We contend that respiration and growth in the resident sediment microbial communities were substrate and temperature limited, respectively. Our study has important implications for how future changes in the biochemical makeup of exported organic matter will affect the balance between mineralization and sequestration of organic carbon in the largest ecosystem on Earth. PMID:22378534

  2. Resource quality affects carbon cycling in deep-sea sediments.

    PubMed

    Mayor, Daniel J; Thornton, Barry; Hay, Steve; Zuur, Alain F; Nicol, Graeme W; McWilliam, Jenna M; Witte, Ursula F M

    2012-09-01

    Deep-sea sediments cover ~70% of Earth's surface and represent the largest interface between the biological and geological cycles of carbon. Diatoms and zooplankton faecal pellets naturally transport organic material from the upper ocean down to the deep seabed, but how these qualitatively different substrates affect the fate of carbon in this permanently cold environment remains unknown. We added equal quantities of (13)C-labelled diatoms and faecal pellets to a cold water (-0.7 °C) sediment community retrieved from 1080 m in the Faroe-Shetland Channel, Northeast Atlantic, and quantified carbon mineralization and uptake by the resident bacteria and macrofauna over a 6-day period. High-quality, diatom-derived carbon was mineralized >300% faster than that from low-quality faecal pellets, demonstrating that qualitative differences in organic matter drive major changes in the residence time of carbon at the deep seabed. Benthic bacteria dominated biological carbon processing in our experiments, yet showed no evidence of resource quality-limited growth; they displayed lower growth efficiencies when respiring diatoms. These effects were consistent in contrasting months. We contend that respiration and growth in the resident sediment microbial communities were substrate and temperature limited, respectively. Our study has important implications for how future changes in the biochemical makeup of exported organic matter will affect the balance between mineralization and sequestration of organic carbon in the largest ecosystem on Earth. PMID:22378534

  3. A review and evaluation of stemflow literature in the hydrologic and biogeochemical cycles of forested and agricultural ecosystems

    NASA Astrophysics Data System (ADS)

    Levia, Delphis F.; Frost, Ethan E.

    2003-04-01

    Stemflow is a spatially localized point input of precipitation and solutes at the plant stem and is of hydrological and ecological significance in forested and agricultural ecosystems. The purpose of this review is to: (1) critically evaluate our current understanding of stemflow; (2) identify gaps in our present knowledge of stemflow; and (3) stimulate further research in areas where present knowledge is weak. The review begins by analyzing stemflow drainage and nutrient inputs under diverse vegetal cover. Stemflow inputs are then examined as a function of meteorological conditions, seasonality, interspecific and intraspecific differences among and within species, canopy structure, spatiality, and atmospheric pollutants in urban environments. Stemflow modeling studies are also reviewed and evaluated. Stemflow yield and chemistry are the result of the interaction of the many complex variables listed. By analyzing each separately, it may be possible to isolate their individual affects on stemflow production and chemistry. A comprehensive understanding of each influencing factor would enable the accurate modeling of stemflow water and nutrient inputs into agricultural and forest soils which may result in the optimization of timber and crop harvests. Some areas where present knowledge is particularly weak are: (1) stemflow production and nutrient transfers in northern boreal forests (aspen, birch, conifers) and desert cacti; (2) chemical enrichment of stemflow from live trees charred by forest fires; (3) stemflow yield and nutrient inputs during the winter season; (4) intraspecific variation in stemflow production and chemistry; (5) stemflow chemistry from standing dead trees; (6) influence of canopy structure on stemflow chemistry; (7) understory stemflow generation and nutrient transfer; and (8) stemflow enrichment associated with insect infestations.

  4. Metals in benthic macrofauna and biogeochemical factors affecting their trophic transfer to wild fish around fish farm cages.

    PubMed

    Kalantzi, I; Papageorgiou, N; Sevastou, K; Black, K D; Pergantis, S A; Karakassis, I

    2014-02-01

    Benthic macroinvertebrates and wild fish aggregating in the vicinity of four Mediterranean fish farms were sampled. Concentrations of metals and other elements were measured in macrofaunal taxa and in fish tissues (muscle, liver, gills, bone, gonad, stomach, intestine, and stomach content). Biological and geochemical characteristics play an important role in metal accumulation in benthic invertebrates, and consequently in metal transfer to higher trophic levels. Macroinvertebrates accumulated lower concentrations of most metals and elements than their respective sediment, except As, P, Na, Zn and Cd. Elemental concentrations of benthic organisms increased with increasing sediment metal content, except Cd, and with % silt, refractory organic matter and chlorophyll-a of sediment due to the influence of sediment geochemistry on metal bioavailability. Tolerant species were found to accumulate higher concentrations of most metals and elements, except for Cd, than equilibrium species. The ecological and morphological characteristics of the benthic invertebrates can affect the bioaccumulation of metals and elements in macrobenthos. Hg and P were found to increase their concentrations from zoobenthos to wild fish aggregating around fish cages feeding on macrofauna.

  5. Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model

    NASA Astrophysics Data System (ADS)

    Khangaonkar, Tarang; Sackmann, Brandon; Long, Wen; Mohamedali, Teizeen; Roberts, Mindy

    2012-09-01

    Nutrient pollution from rivers, nonpoint source runoff, and nearly 100 wastewater discharges is a potential threat to the ecological health of Puget Sound with evidence of hypoxia in some basins. However, the relative contributions of loads entering Puget Sound from natural and anthropogenic sources, and the effects of exchange flow from the Pacific Ocean are not well understood. Development of a quantitative model of Puget Sound is thus presented to help improve our understanding of the annual biogeochemical cycles in this system using the unstructured grid Finite-Volume Coastal Ocean Model framework and the Integrated Compartment Model (CE-QUAL-ICM) water quality kinetics. Results based on 2006 data show that phytoplankton growth and die-off, succession between two species of algae, nutrient dynamics, and dissolved oxygen in Puget Sound are strongly tied to seasonal variation of temperature, solar radiation, and the annual exchange and flushing induced by upwelled Pacific Ocean waters. Concentrations in the mixed outflow surface layer occupying approximately 5-20 m of the upper water column show strong effects of eutrophication from natural and anthropogenic sources, spring and summer algae blooms, accompanied by depleted nutrients but high dissolved oxygen levels. The bottom layer reflects dissolved oxygen and nutrient concentrations of upwelled Pacific Ocean water modulated by mixing with biologically active surface outflow in the Strait of Juan de Fuca prior to entering Puget Sound over the Admiralty Inlet. The effect of reflux mixing at the Admiralty Inlet sill resulting in lower nutrient and higher dissolved oxygen levels in bottom waters of Puget Sound than the incoming upwelled Pacific Ocean water is reproduced. By late winter, with the reduction in algal activity, water column constituents of interest, were renewed and the system appeared to reset with cooler temperature, higher nutrient, and higher dissolved oxygen waters from the Pacific Ocean.

  6. Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model

    SciTech Connect

    Khangaonkar, Tarang; Sackmann, Brandon; Long, Wen; Mohamedali, Teizeen; Roberts, Mindy

    2012-08-14

    Nutrient pollution from rivers, nonpoint source runoff, and nearly 100 wastewater discharges is a potential threat to the ecological health of Puget Sound with evidence of hypoxia in some basins. However, the relative contributions of loads entering Puget Sound from natural and anthropogenic sources, and the effects of exchange flow from the Pacific Ocean are not well understood. Development of a quantitative model of Puget Sound is thus presented to help improve our understanding of the annual biogeochemical cycles in this system using the unstructured grid Finite-Volume Coastal Ocean Model framework and the Integrated Compartment Model (CE-QUAL-ICM) water quality kinetics. Results based on 2006 data show that phytoplankton growth and die-off, succession between two species of algae, nutrient dynamics, and dissolved oxygen in Puget Sound are strongly tied to seasonal variation of temperature, solar radiation, and the annual exchange and flushing induced by upwelled Pacific Ocean waters. Concentrations in the mixed outflow surface layer occupying approximately 5–20 m of the upper water column show strong effects of eutrophication from natural and anthropogenic sources, spring and summer algae blooms, accompanied by depleted nutrients but high dissolved oxygen levels. The bottom layer reflects dissolved oxygen and nutrient concentrations of upwelled Pacific Ocean water modulated by mixing with biologically active surface outflow in the Strait of Juan de Fuca prior to entering Puget Sound over the Admiralty Inlet. The effect of reflux mixing at the Admiralty Inlet sill resulting in lower nutrient and higher dissolved oxygen levels in bottom waters of Puget Sound than the incoming upwelled Pacific Ocean water is reproduced. Finally, by late winter, with the reduction in algal activity, water column constituents of interest, were renewed and the system appeared to reset with cooler temperature, higher nutrient, and higher dissolved oxygen waters from the Pacific

  7. ASSESSMENT OF INTRINSIC BIOREMEDIATION OF A COAL-TAR AFFECTED AQUIFER USING TWO-DIMENSIONAL REACTIVE TRANSPORT AND BIOGEOCHEMICAL MASS BALANCE APPROACHES

    EPA Science Inventory

    Expedited site characterization and groundwater monitoring using direct-push technology and conventional monitoring wells were conducted at a former manufactured gas plant site. Biogeochemical data and heterotrophic plate counts support the presence of microbially mediated remedi...

  8. Peaks of solar cycles affect the gender ratio.

    PubMed

    Davis, George E; Lowell, Walter E

    2008-12-01

    In this study, we report that the gender ratio (GR) at death [where GR=(N(males)/N(males)+N(females))] of those born (and likely conceived) in solar cycle peaks (about a 3-year period occurring on average every approximately 11 years), is inversely related to mean male age at death; e.g., the higher the GR(at death) the lower the mean lifespan, while the GR(at death) of those born in non-peak years has no relation to mean male lifespan. Although changes in the GR are small and may be of little clinical significance, the GR is a sensitive indicator of environmental effects, and therefore is pertinent to epigenetics. This paper supports the hypothesis that solar radiation, probably in the ultraviolet spectrum, by some manner interacts with chromosomal DNA (genes) and produces the genetic variety that not only fosters adaptation, but also produces the diseases that reduce lifespan. This paper also proposes that sunlight is more effective in modifying genomes at the time of conception than later in gestation or infancy. Referring to the work of others, this study also reveals that geographic latitude also affects the GR, suggesting that the variation in light is probably as important as the intensity of light in modifying genomes. This study finds that men sustain more genetic variation, producing 28% more disease than women, as well as a 2% decrease in GR from birth to death, and a shorter life (in Maine) by 7 years. PMID:18755551

  9. Natural and anthropogenic impacts on biogeochemical cycle in Yangtze River basin: Source, transformation and fate of dissolved organic matter (DOM) characterized by 3-D fluorescence spectroscopy

    NASA Astrophysics Data System (ADS)

    Gan, Shuchai; Wu, Ying; Bao, Hongyan; Zhang, Jing

    2013-04-01

    Inland waters play an important role in the global carbon cycle as reactors for DOM cycling, transformation and transportation. With large amounts of terrestrial DOM, the Yangtze River is vital for coastal environment and ecosystem. In the context of climate change, it's critical to evaluate both hydrodynamic conditions and increasing human activities' impacts on biogeochemical cycle of DOM in Yangtze River across different climatic and hydrologic regions which are poorly understood. What's more, the hydrologic condition changes caused by the Three Gorges Dam (TGD, world's largest power station in terms of installed capacity) have recently proven to be a partition factor for fluvial particle. However, it's still an enigma for dissolved matter cycle. To address those issues, this study applies EEMs combined with bulk characteristics, chlorophyll and absorption spectrum in an attempt to assess characteristics and dynamics of DOM in Yangtze River. It's a novel optical approach that could 'see' molecular structure of DOM without the limits of time-consuming and laborious molecular measurements. Combined with parallel factor analysis, 5 individual fluorescent components have been identified: 3 humic-like (H1, H2, H3) and 2 protein-like components (P1, P2). With typical bioavailability and photo-reactivity, these components suggest different sources and dynamics. On the whole, both DOC and the sum of all 5 components (? Fluo) increased remarkably from the upper reach especially to the Three Gorge Dam and thereafter remained constant (R2between DOC and - Fluo: 0.92). The protein-like components (- P) accounted for 1/4 of - Fluo with apparently weak correlations with DOC and chlorophyll, which implied that the DOM is not dominated by autochthonous production, especially for the upper reach with high concentration of total suspended matter. As for Humic-like component, increasing H1 and DOC in the TGD reservoir area implied impacts from human activities there with intercept

  10. Climate Variability and Change in a Eutrophic Great Lakes Freshwater Embayment: Shifting Hydrodynamics and the Potential for Indirect Impacts on Biogeochemical Processes, Carbon Cycling and Hypoxia

    NASA Astrophysics Data System (ADS)

    Klump, J. V.; Waples, J. T.

    2008-12-01

    Future changes in the climatic regime of the Great Lakes region have the potential to induce a variety of both direct (e.g. thermal) and indirect (e.g. biogeochemical) alterations in ecosystem function. In the case of the later, we have identified a statistically significant shift in wind direction of the average wind field over the Great Lakes basin that is consistent with a southward migration of the dominant summer storm track. In Green Bay (NW Lake Michigan), we have shown that the new wind field has most likely resulted in periods of decreased thermal stratification and an overall decrease in water mass exchange with Lake Michigan. In subsequent studies, aimed at determining the impact of these shifts in the physical climate regime, time series measurements of currents, turbidity, dissolved oxygen, and the Be-7 activity of particulates in bottom sediments, sediment traps, and suspended particulates have been made over a 3 year period. A tracer of short term particle dynamics, Be-7 (half life 53 d) is useful in estimating particle residence times in the water column, along with episodic sediment deposition and erosion rates, and the average number of deposition/erosion cycles a particle experiences prior to permanent burial in the sediments. Be-7 derived estimates of the age of particulate organic carbon cycling between surface sediments and the overlying waters are on the order of months, and are dependent upon resuspension frequency. Remineralization of organic carbon within this actively resuspended pool of material results in estimated decomposition rates for POC ranging 0.08 to 0.04% per day, a rate intermediate between the rapid remineralization of fresh algal material and post-depositional diagenesis. Comparisons between 1989-90 and 2004-06 show a decrease in resuspension frequency, possibly in response to shifts in regional climatic scale dynamics. This appears to result in an increase in the efficiency of trapping of organic matter in the bay and a

  11. Biogeochemical controls on daily cycling of hydrochemistry and δ13C of dissolved inorganic carbon in a karst spring-fed pool

    NASA Astrophysics Data System (ADS)

    Jiang, Yongjun; Hu, Yijun; Schirmer, Mario

    2013-01-01

    SummaryVariations in temperature, photosynthesis and respiration can force daily variations in pH, DO and DIC in surface water, potentially driving calcite precipitation or dissolution of calcium carbonate. Diel cycles of hydrochemistry and δ13CDIC were measured at high time-resolution (1 h) to assess the relative magnitudes of biological and geochemical controls on carbonate chemistry and carbon cycling in a spring-fed pool with flourishing submerged plants in Chongqing, SW China under sunny weather. Results show that there were no diurnal variations in the physical and chemical parameters of the Shuifang spring water. However, during the daytime periods, SC, Ca2+, alkalinity, NO3- and pCO2 in the pool water decreased to less than those in the spring water, while pH, DO and δ13CDIC in the pool water became greater than those in the spring water. Conversely, during nighttime periods, pool water SC, Ca2+, alkalinity, NO3- and pCO2 returned to or even became greater than the spring water, while pH, DO and δ13CDIC decreased to less than the spring water. This work shows that photosynthesis and respiration of subaquatic communities are the dominant processes influencing the observed diel variations of hydrochemistry in karst spring-fed pool water. During the daytime, a simultaneous increase of δ13CDIC and DO, and decrease in DIC indicates that photosynthesis was the primary control on hydrochemistry of the pool water. Conversely, the water remained saturated with respect to calcite (SIc ranging from 0.04 to 0.15) and δ13CDIC values decreased at nighttime, indicating that respiration of the subaquatic community had a dominant influence over calcite dissolution and outgassing in the pool water. The total amount of DIC loss was estimated to be about 110,785 mmol/day which represented about 1.33 kg C/day. More specifically, the amount of DIC loss through carbonate precipitation was about 38,775 mmol/day (0.47 kg C/day), whereas photosynthetic uptake was about 60

  12. Stable Strontium Isotopes (δ88/86Sr) As a Tracer of Sr Sources and Biogeochemical Cycling in Two Catchments Draining Fiordland, New Zealand

    NASA Astrophysics Data System (ADS)

    Andrews, G.; Jacobson, A. D.; Lehn, G. O.

    2014-12-01

    To understand how Sr isotopes behave during chemical weathering and biogeochemical cycling, we analyzed the stable Sr isotope composition (δ88/86Sr) of rivers, rocks, sediments, plants, and soils from the Cleddau and Hollyford catchments in Fiordland, New Zealand. We leached rocks, sediments, and soils to isolate relatively soluble Sr sources. δ88/86Sr values were measured using an 87Sr-84Sr double-spike MC-TIMS method, which was optimized according to the Monte Carlo error model described in Lehn et al. (2013). The long-term, external reproducibility of the method is ±0.020‰ (2σSD) based on repeated measurements of NBS-987 [δ88/86Sr = 0.000 ± 0.004‰ (2σSEM), n=77] and IAPSO seawater [δ88/86Sr = 0.396 ± 0.005‰ (2σSEM), n=54]. Although the study site receives abundant rainfall (6700mm/yr), atmospheric inputs of Sr are negligible. We find that δ88/86Sr values can distinguish between silicate- versus carbonate- derived riverine Sr sources when traditional tracers, such as radiogenic Sr isotope (87Sr/86Sr) and molar Ca/Sr ratios, are equivocal. Moreover, rivers draining gabbro bedrock in the Cleddau and Upper Hollyford catchments have higher δ88/86Sr values (0.368‰) as compared to bulk silicate rock (0.162 - 0.284‰) and sediment (0.286‰). In the Lower Hollyford catchment, tributary rivers draining volcanic and sedimentary rocks also have higher δ88/86Sr values (0.328‰) as compared to bulk silicate rock (0.177‰) and sediment (0.260‰). We examine several hypotheses to explain the elevated riverine δ88/86Sr values, including end-member mixing, fractionation during chemical weathering, and plant uptake. We attribute the riverine δ88/86Sr values to mixing with the soil pore water pool, which is isotopically heavy due to preferential uptake of 86Sr by plants.

  13. Biogeochemistry of sulfur in the Vienna Woods: Study of sulfur stable isotope ratios by MC-ICP-MS as indicator of biogeochemical S cycling

    NASA Astrophysics Data System (ADS)

    Hanousek, Ondrej; Berger, Torsten W.; Prohaska, Thomas

    2014-05-01

    Sulfur entering forest ecosystems originates mainly from combustion of fossil fuels. This source of sulfur has been strongly (by more than 95 %) reduced in last decades and recently, higher sulfur output (in soil solution or stream water) than sulfur input (in rain water) in an ecosystem was registered in many monitored forest ecosystems. This unbalance may be caused by weathering of sulfur-bearing rocks, desorption of sulfur adsorbed in soil in the past or (re)mineralization of organic sulfur compounds. This 'negative' balance leads to mobilization of base cations along with SO42- and as such to an acidification of soils. As hypothesis, δ34S/32S depletion in stream water will be observed if a considerable proportion of atmospherically deposited sulfate is cycled through the organic S pool. Rain water and soil solutions samples were collected for this study at 3 sites (beech stands) in the Vienna Woods, Austria twice a month from May 2010 to April 2012. Due to the expected sulfate concentration gradient with respect to the distance from a tree, sampling was carried out at 5 intervals from a stem. The sulfur concentration in the samples was determined by ion chromatography. Sulfur isotope ratios (δ34S/32SV CDT) were analyzed by multicollector inductively coupled plasma mass spectrometry (MC-ICP-MS) in edge-resolution mode. The method was validated using IAEA-S-1 and IAEA-S-2 isotopic certified reference materials. The combined standard uncertainty of the measurement (uc = 0.10 %, k = 1) proves the suitability of the developed method. The concentration of sulfur in rain water showed expected behavior, with a seasonal maximum in winter months, in contrast to the corresponding δ34S/32SV CDT isotope ratios, where no or low seasonal trends were observed. The sulfur isotope ratios in soil solution samples show a dependence on the distance from a tree stem and the sampling depth with lower δ34S/32SV CDT ratios as compared to the precipitation. The measured isotopic

  14. Post-transcriptional RNA Regulons Affecting Cell Cycle and Proliferation

    PubMed Central

    Blackinton, Jeff G.

    2014-01-01

    The cellular growth cycle is initiated and maintained by punctual, yet agile, regulatory events involving modifications of cell cycle proteins as well as coordinated gene expression to support cyclic checkpoint decisions. Recent evidence indicates that post-transcriptional partitioning of messenger RNA subsets by RNA-binding proteins help physically localize, temporally coordinate, and efficiently translate cell cycle proteins. This dynamic organization of mRNAs encoding cell cycle components contributes to the overall economy of the cell cycle consistent with the post-transcriptional RNA regulon model of gene expression. This review examines several recent studies demonstrating the coordination of mRNA subsets encoding cell cycle proteins during nuclear export and subsequent coupling to protein synthesis, and discusses evidence for mRNA coordination of p53 targets and the DNA damage response pathway. We consider how these observations may connect to upstream and downstream post-transcriptional coordination and coupling of splicing, export, localization, and translation. Published examples from yeast, nematode, insect, and mammalian systems are discussed, and we consider genetic evidence supporting the conclusion that dysregulation of RNA regulons may promote pathogenic states of growth such as carcinogenesis. PMID:24882724

  15. Does prolonged cycling of moderate intensity affect immune cell function?

    PubMed Central

    Scharhag, J; Meyer, T; Gabriel, H; Schlick, B; Faude, O; Kindermann, W; Shephard, R

    2005-01-01

    Background: Prolonged exercise may induce temporary immunosuppression with a presumed increased susceptibility for infection. However, there are only few data on immune cell function after prolonged cycling at moderate intensities typical for road cycling training sessions. Methods: The present study examined the influence on immune cell function of 4 h of cycling at a constant intensity of 70% of the individual anaerobic threshold. Interleukin-6 (IL-6) and C-reactive protein (CRP), leukocyte and lymphocyte populations, activities of natural killer (NK), neutrophils, and monocytes were examined before and after exercise, and also on a control day without exercise. Results: Cycling for 4 h induced a moderate acute phase response with increases in IL-6 from 1.0 (SD 0.5) before to 9.6 (5.6) pg/ml 1 h after exercise and CRP from 0.5 (SD 0.4) before to 1.8 (1.3) mg/l 1 day after exercise. Although absolute numbers of circulating NK cells, monocytes, and neutrophils increased during exercise, on a per cell basis NK cell activity, neutrophil and monocyte phagocytosis, and monocyte oxidative burst did not significantly change after exercise. However, a minor effect over time for neutrophil oxidative burst was noted, tending to decrease after exercise. Conclusions: Prolonged cycling at moderate intensities does not seem to seriously alter the function of cells of the first line of defence. Therefore, the influence of a single typical road cycling training session on the immune system is only moderate and appears to be safe from an immunological point of view. PMID:15728699

  16. Short term hypothyroidism affects ovarian function in the cycling rat

    PubMed Central

    2010-01-01

    Background Rats made hypothyroid with propilthyouracil start showing abnormal cycling on the second cycle after the start of the treatment, with a high proportion of spontaneous pseudopregnancies and reduced fertility. Methods To investigate some of the mechanisms involved in these reproductive abnormalities, hypothyroidism was induced in virgin rats by propilthyouracil (0.1 g/L in the drinking water) and we determined circulating hormones by radioimmunoassay and whole ovary expression of ovarian hormone receptors, growth factors and steroidogenic enzymes using semi-quantitative RT-PCR. The study was performed on days 6 to 9 of treatment, corresponding to diestrus I (at 20.00-22.00 h), diestrus II (at 20.00-22.00 h), proestrus and estrus (both at 8.00-10.00 h and 20.00-22.00 h) of the second estrous cycle after beginning propilthyouracil treatment. Another group of rats was mated on day 8 and the treatment continued through the entire pregnancy to evaluate reproductive performance. Results Hypothyroidism increased circulating prolactin and estradiol on estrus 5 to 7-fold and 1.2 to 1.4-fold respectively. Growth hormone and insulin-like growth factor 1 diminished 60 and 20% respectively on proestrus morning. Hypothyroidism doubled the ovarian mRNA contents of estrogen receptor-beta on proestrus and estrus evenings, cyp19A1 aromatase mRNA on estrus evening and of growth hormone receptor on proestrus evening. Hypothyroidism did not influence ovulation rate or the number of corpora lutea at term, but a diminished number of implantation sites and pups per litter were observed (Hypothyroid: 11.7 +/- 0.8 vs. Control: 13.9 +/- 0.7). Conclusions Short term hypothyroidism alters normal hormone profile in the cycling rat increasing the expression of estrogen receptor-beta and cyp19A1 aromatase on estrus, which in turn may stimulate estradiol and prolactin secretion, favouring corpus luteum survival and the subsequent instauration of pseudopregnancy. PMID:20149258

  17. Global Biology Research Program: Biogeochemical Processes in Wetlands

    NASA Technical Reports Server (NTRS)

    Bartlett, D. S. (Editor)

    1984-01-01

    The results of a workshop examining potential NASA contributions to research on wetland processes as they relate to global biogeochemical cycles are summarized. A wetlands data base utilizing remotely sensed inventories, studies of wetland/atmosphere exchange processes, and the extrapolation of local measurements to global biogeochemical cycling processes were identified as possible areas for NASA support.

  18. Cretaceous-Palaeogene experiments in Biogeochemical Resilience

    NASA Astrophysics Data System (ADS)

    Penman, D. E.; Henehan, M. J.; Hull, P. M.; Planavsky, N.; Schmidt, D. N.; Rae, J. W. B.; Thomas, E.; Huber, B. T.

    2015-12-01

    Human activity is altering biogeochemical cycles in the ocean. While ultimately anthropogenic forcings may be brought under control, it is still unclear whether tipping points may exist beyond which human-induced changes to biogeochemical cycles become irreversible. We use the Late Cretaceous and the Cretaceous-Palaeogene (K-Pg) boundary interval as an informative case study. Over this interval, two carbon cycle perturbations (gradual flood basalt volcanism and abrupt bolide impact) occurred within a short time window, allowing us to investigate the resilience of biogeochemical cycles to different pressures applied to the same initial boundary conditions on very different time scales. We demonstrate that relatively gradual emission of CO2 from the Deccan large igneous province was efficiently mitigated within the limits of existing biogeochemical processes. However, the rapid extinction of pelagic calcifying organisms at the K-Pg boundary due to the Chicxulub bolide impact had more profound effects, and caused lasting (> 1 million years) changes to biogeochemical cycles. By combining sedimentological observations with boron isotope-based pH reconstructions over these events, we document two potentially useful partial analogues for best and worst case scenarios for anthropogenic global change. We suggest that if current ocean acidification results in the mass extinction of marine pelagic calcifiers, we may cause profound changes to the Earth system that will persist for 100,000s to millions of years.

  19. Oceanographic and Biogeochemical Insights from Diatom Genomes

    NASA Astrophysics Data System (ADS)

    Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

    2010-01-01

    Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

  20. Using Coupled Models to Study the Effects of River Discharge on Biogeochemical Cycling and Hypoxia in the Northern Gulf of Mexico

    NASA Technical Reports Server (NTRS)

    Penta, Bradley; Ko, D.; Gould, Richard W.; Arnone, Robert A.; Greene, R.; Lehrter, J.; Hagy, James; Schaeffer, B.; Murrell, M.; Kurtz, J.; Herchenroder, B.; Green, R.; Eldridge, P.

    2009-01-01

    We describe emerging capabilities to understand physical processes and biogeoehemical cycles in coastal waters through the use of satellites, numerical models, and ship observations. Emerging capabilities provide significantly improved ability to model ecological systems and the impact of environmental management actions on them. The complex interaction of physical and biogeoehemical processes responsible for hypoxic events requires an integrated approach to research, monitoring, and modeling in order to fully define the processes leading to hypoxia. Our efforts characterizes the carbon cycle associated with river plumes and the export of organic matter and nutrients form coastal Louisiana wetlands and embayments in a spatially and temporally intensive manner previously not possible. Riverine nutrients clearly affect ecosystems in the northern Gulf of Mexico as evidenced in the occurrence of regional hypoxia events. Less known and largely unqualified is the export of organic matter and nutrients from the large areas of disappearing coastal wetlands and large embayments adjacent to the Louisiana Continental Shelf. This project provides new methods to track the river plume along the shelf and to estimate the rate of export of suspended inorganic and organic paniculate matter and dissolved organic matter form coastal habitats of south Louisiana.

  1. Allyl isothiocyanate affects the cell cycle of Arabidopsis thaliana

    PubMed Central

    Åsberg, Signe E.; Bones, Atle M.; Øverby, Anders

    2015-01-01

    Isothiocyanates (ITCs) are degradation products of glucosinolates present in members of the Brassicaceae family acting as herbivore repellents and antimicrobial compounds. Recent results indicate that allyl ITC (AITC) has a role in defense responses such as glutathione depletion, ROS generation and stomatal closure. In this study we show that exposure to non-lethal concentrations of AITC causes a shift in the cell cycle distribution of Arabidopsis thaliana leading to accumulation of cells in S-phases and a reduced number of cells in non-replicating phases. Furthermore, transcriptional analysis revealed an AITC-induced up-regulation of the gene encoding cyclin-dependent kinase A while several genes encoding mitotic proteins were down-regulated, suggesting an inhibition of mitotic processes. Interestingly, visualization of DNA synthesis indicated that exposure to AITC reduced the rate of DNA replication. Taken together, these results indicate that non-lethal concentrations of AITC induce cells of A. thaliana to enter the cell cycle and accumulate in S-phases, presumably as a part of a defensive response. Thus, this study suggests that AITC has several roles in plant defense and add evidence to the growing data supporting a multifunctional role of glucosinolates and their degradation products in plants. PMID:26042144

  2. [Effects of global climate change on the ecological characteristics and biogeochemical significance of marine viruses--A review].

    PubMed

    Yang, Yunlan; Cai, Lanlan; Zhang, Rui

    2015-09-01

    As the most abundance biological agents in the oceans, viruses can influence the physiological and ecological characteristics of host cells through viral infections and lysis, and affect the nutrient and energy cycles of the marine food chain. Thus, they are the major players in the ocean biogeochemical processes. The problems caused by global climate changes, such as sea-surface warming, acidification, nutrients availability, and deoxygenation, have the potential effects on marine viruses and subsequently their ecological and biogeochemical function in the ocean. Here, we reviewed the potential impacts of global climate change on the ecological characteristics (e. g. abundance, distribution, life cycle and the host-virus interactions) and biogeochemical significance (e. g. carbon cycling) of marine viruses. We proposed that marine viruses should not be ignored in the global climate change study. PMID:26762022

  3. [Effects of global climate change on the ecological characteristics and biogeochemical significance of marine viruses--A review].

    PubMed

    Yang, Yunlan; Cai, Lanlan; Zhang, Rui

    2015-09-01

    As the most abundance biological agents in the oceans, viruses can influence the physiological and ecological characteristics of host cells through viral infections and lysis, and affect the nutrient and energy cycles of the marine food chain. Thus, they are the major players in the ocean biogeochemical processes. The problems caused by global climate changes, such as sea-surface warming, acidification, nutrients availability, and deoxygenation, have the potential effects on marine viruses and subsequently their ecological and biogeochemical function in the ocean. Here, we reviewed the potential impacts of global climate change on the ecological characteristics (e. g. abundance, distribution, life cycle and the host-virus interactions) and biogeochemical significance (e. g. carbon cycling) of marine viruses. We proposed that marine viruses should not be ignored in the global climate change study.

  4. Evaluation of Physicochemical Deterioration and Lipid Oxidation of Beef Muscle Affected by Freeze-thaw Cycles

    PubMed Central

    Rahman, M. H.; Hossain, M. M.; Rahman, S. M. E.; Amin, M. R.; Oh, Deog-Hwan

    2015-01-01

    This study was performed to explore the deterioration of physicochemical quality of beef hind limb during frozen storage at −20℃, affected by repeated freeze-thaw cycles. The effects of three successive freeze-thaw cycles on beef hind limb were investigated comparing with unfrozen beef muscle for 80 d by keeping at −20±1℃. The freeze-thaw cycles were subjected to three thawing methods and carried out to select the best one on the basis of deterioration of physicochemical properties of beef. As the number of repeated freeze-thaw cycles increased, drip loss decreased and water holding capacity (WHC) increased (p<0.05) till two cycles and then decreased. Cooking loss increased in cycle one and three but decreased in cycle two. Moreover, drip loss, WHC and cooking loss affected (p<0.05) by thawing methods within the cycles. However, pH value decreased (p<0.05), but peroxide value (p<0.05), free fatty acids value (p<0.05) and TBARS value increased (p<0.05) significantly as the number of repeated freeze-thaw cycles increased. Moreover, significant (p<0.05) interactive effects were found among the thawing methods and repeated cycles. As a result, freeze-thaw cycles affected the physicochemical quality of beef muscle, causing the degradation of its quality. PMID:26877637

  5. Linking spatially distributed biogeochemical data with a two-host life-cycle pathogen:A model of whirling disease dynamics in salmonid fishes in the Intermountain West

    NASA Astrophysics Data System (ADS)

    Fytilis, N.; Lamb, R.; Stevens, L.; Morrissey, L. A.; Kerans, B.; Rizzo, D. M.

    2010-12-01

    Fish diseases are often caused by waterborne parasites, making them ideal systems for modeling the non-linear relationships between biogeochemical features and disease dynamics. Myxobolus cerebralis, the causative agent of whirling disease, has been a major contributor to the loss of wild rainbow trout populations in numerous streams within the Intermountain West (Colorado, Idaho, Montana, Utah, Wyoming). The parasite alternates between an invertebrate and vertebrate host, being transmitted between the sediment feeding worm T.Tubifex and salmonid fishes. A greater understanding of the linkage between biological stream integrity, geomorphic features, water quality parameters and whirling disease risk is needed to improve current management techniques. Biodiversity and abundance of the worm communities are influenced by biogeochemical features and linked to disease severity in fish. We collected and identified ~700 worms from eight sites using molecular genetic probes and a taxonomic key. Additionally, ~1700 worms were identified using only a taxonomic key. Our work examines the links between worm community structure and biogeochemical features. We use a modified Self-Organizing-Map (SOM), which is a non-parametric clustering method based on an artificial neural network (ANN). Clustering methods are particularly attractive for exploratory data analyses because they do not require either the target number of groupings or the data structure be specified at the outset. ANN clustering methods have been shown to be more robust and to account for more data variability than traditional methods when applied to clustering geo-hydrochemical and microbiological datasets. The SOM highlights spatial variation of worm community structure between sites; and is used in tandem with expert knowledge (Lamb and Kerans) of local worm communities and a Madison River, MT physiochemical dataset (GIS-derived layers, water quality parameters). We iteratively clustered the physiochemical data

  6. Menstrual cycle phase affects discrimination of infant cuteness.

    PubMed

    Lobmaier, Janek S; Probst, Fabian; Perrett, David I; Heinrichs, Markus

    2015-04-01

    Recent studies have shown that women are more sensitive than men to subtle cuteness differences in infant faces. It has been suggested that raised levels in estradiol and progesterone may be responsible for this advantage. We compared young women's sensitivity to computer-manipulated baby faces varying in cuteness. Thirty-six women were tested once during ovulation and once during the luteal phase of their menstrual cycle. In a two alternative forced-choice experiment, participants chose the baby which they thought was cuter (Task 1), younger (Task 2), or the baby that they would prefer to babysit (Task 3). Saliva samples to assess levels of estradiol, progesterone and testosterone were collected at each test session. During ovulation, women were more likely to choose the cuter baby than during the luteal phase, in all three tasks. These results suggest that cuteness discrimination may be driven by cyclic hormonal shifts. However none of the measured hormones were related to increased cuteness sensitivity. We speculate that other hormones than the ones measured here might be responsible for the increased sensitivity to subtle cuteness differences during ovulation.

  7. Breaking the cycle: extending the persistent pain cycle diagram using an affective pictorial metaphor.

    PubMed

    Stones, Catherine; Cole, Frances

    2014-01-01

    The persistent pain cycle diagram is a common feature of pain management literature. but how is it designed and is it fulfilling its potential in terms of providing information to motivate behavioral change? This article examines on-line persistent pain diagrams and critically discusses their purpose and design approach. By using broad information design theories by Karabeg and particular approaches to dialogic visual communications in business, this article argues the need for motivational as well as cognitive diagrams. It also outlines the design of a new persistent pain cycle that is currently being used with chronic pain patients in NHS Bradford, UK. This new cycle adopts and then visually extends an established verbal metaphor within acceptance and commitment therapy (ACT) in an attempt to increase the motivational aspects of the vicious circle diagram format.

  8. Pedalling rate affects endurance performance during high-intensity cycling.

    PubMed

    Nielsen, Jens Steen; Hansen, Ernst Albin; Sjøgaard, Gisela

    2004-06-01

    The purpose of this study into high-intensity cycling was to: (1) test the hypothesis that endurance time is longest at a freely chosen pedalling rate (FCPR), compared to pedalling rates 25% lower (FCPR-25) and higher (FCPR+25) than FCPR, and (2) investigate how physiological variables, such as muscle fibre type composition and power reserve, relate to endurance time. Twenty males underwent testing to determine their maximal oxygen uptake (VO(2max)), power output corresponding to 90% of VO(2max) at 80 rpm (W90), FCPR at W90, percentage of slow twitch muscle fibres (% MHC I), maximal leg power, and endurance time at W90 with FCPR-25, FCPR, and FCPR+25. Power reserve was calculated as the difference between applied power output at a given pedalling rate and peak crank power at this same pedalling rate. W90 was 325 (47) W. FCPR at W90 was 78 (11) rpm, resulting in FCPR-25 being 59 (8) rpm and FCPR+25 being 98 (13) rpm. Endurance time at W90(FCPR+25) [441 (188) s] was significantly shorter than at W90(FCPR) [589 (232) s] and W90(FCPR-25) [547 (170) s]. Metabolic responses such as VO(2) and blood lactate concentration were generally higher at W90(FCPR+25) than at W90(FCPR-25) and W90(FCPR). Endurance time was negatively related to VO(2max), W90 and % MHC I, while positively related to power reserve. In conclusion, at group level, endurance time was longer at FCPR and at a pedalling rate 25% lower compared to a pedalling rate 25% higher than FCPR. Further, inter-individual physiological variables were of significance for endurance time, % MHC I showing a negative and power reserve a positive relationship.

  9. Assessment of intrinsic bioremediation of a coal-tar-affected aquifer using two-dimensional reactive transport and biogeochemical mass balance approaches

    SciTech Connect

    Rogers, S.W.; Ong, S.K.; Stenback, G.A.; Golchin, J.; Kjartanson, B.H.

    2007-01-15

    Expedited site characterization and groundwater monitoring using direct-push technology and conventional monitoring wells were conducted at a former manufactured gas plant site. Biogeochemical data and heterotrophic plate counts support the presence of microbially mediated remediation. By superimposing solutions of a two-dimensional reactive transport analytical model, first-order degradation rate coefficients (day{sup -1}) of various compounds for the dissolved-phase plume were estimated (i.e., benzene (0.0084), naphthalene (0.0058), and acenaphthene (0.0011)). The total mass transformed by aerobic respiration, nitrate reduction, and sulfate reduction around the free-phase coal-tar dense-nonaqueous-phase-liquid region and in the plume was estimated to be approximately 4.5 kg/y using a biogeochemical mass-balance approach. The total mass transformed using the degradation rate coefficients was estimated to be approximately 3.6 kg/y. Results showed that a simple two-dimensional analytical model and a biochemical mass balance with geochemical data from expedited site characterization can be useful for rapid estimation of mass-transformation rates.

  10. Assessment of intrinsic bioremediation of a coal-tar-affected aquifer using Two-dimensional reactive transport and Biogeochemical mass balance approaches.

    PubMed

    Rogers, Shane W; Ong, Say Kee; Stenback, Greg A; Golchin, Johanshir; Kjartanson, Bruce H

    2007-01-01

    Expedited site characterization and groundwater monitoring using direct-push technology and conventional monitoring wells were conducted at a former manufactured gas plant site. Biogeochemical data and heterotrophic plate counts support the presence of microbially mediated remediation. By superimposing solutions of a two-dimensional reactive transport analytical model, first-order degradation rate coefficients ((day-1) ) of various compounds for the dissolved-phase plume were estimated (i.e., benzene [0.0084], naphthalene [0.0058], and acenaphthene [0.0011]). The total mass transformed by aerobic respiration, nitrate reduction, and sulfate reduction around the free-phase coal-tar dense-nonaqueous-phase-liquid region and in the plume was estimated to be approximately 4.5 kg/y using a biogeochemical mass-balance approach. The total mass transformed using the degradation rate coefficients was estimated to be approximately 3.6 kg/y. Results showed that a simple two-dimensional analytical model and a biochemical mass balance with geochemical data from expedited site characterization can be useful for rapid estimation of mass-transformation rates.

  11. Divergence in plant and microbial allocation strategies explains continental patterns in microbial allocation and biogeochemical fluxes.

    PubMed

    Averill, Colin

    2014-10-01

    Allocation trade-offs shape ecological and biogeochemical phenomena at local to global scale. Plant allocation strategies drive major changes in ecosystem carbon cycling. Microbial allocation to enzymes that decompose carbon vs. organic nutrients may similarly affect ecosystem carbon cycling. Current solutions to this allocation problem prioritise stoichiometric tradeoffs implemented in plant ecology. These solutions may not maximise microbial growth and fitness under all conditions, because organic nutrients are also a significant carbon resource for microbes. I created multiple allocation frameworks and simulated microbial growth using a microbial explicit biogeochemical model. I demonstrate that prioritising stoichiometric trade-offs does not optimise microbial allocation, while exploiting organic nutrients as carbon resources does. Analysis of continental-scale enzyme data supports the allocation patterns predicted by this framework, and modelling suggests large deviations in soil C loss based on which strategy is implemented. Therefore, understanding microbial allocation strategies will likely improve our understanding of carbon cycling and climate.

  12. Quantifying the effects of nutrient loading on dissolved O2 cycling and hypoxia in Chesapeake Bay using a coupled hydrodynamic-biogeochemical model

    NASA Astrophysics Data System (ADS)

    Testa, Jeremy M.; Li, Yun; Lee, Younjoo J.; Li, Ming; Brady, Damian C.; Di Toro, Dominic M.; Kemp, W. Michael; Fitzpatrick, James J.

    2014-11-01

    The Regional Ocean Modeling System (ROMS) was coupled to a biogeochemical model (RCA) to understand the controls on dissolved oxygen (O2) depletion in Chesapeake Bay. The model was calibrated to observational data in the year 2000 and subsequent simulations were performed for a 10-year period, where water-column state variables were validated against observations using multiple error metrics and model-simulated rate processes were compared to available measurements. ROMS-RCA captured observed seasonal and regional dynamics of water-column chlorophyll-a, dissolved O2, and nutrient concentrations, as well as sediment-water nutrient and oxygen fluxes and community respiration rates, but for the year 2000, the model over-predicted surface-water chlorophyll-a and bottom-water O2 in some regions. A series of model experiments were made using the physical regime for the year 2000 to understand ecosystem responses to altered loads of nitrogen and phosphorus and to quantify the spatial and temporal response of Chesapeake Bay to altered nutrient loading. Nutrient loading experiments revealed a non-linear response of hypoxia to nitrogen load, where hypoxic-volume-days maximized at nitrogen loads twice of that observed in the year 2000. O2 levels were more sensitive to nitrogen loads than phosphorus loads, consistent with the preponderance of nitrogen limitation in Chesapeake Bay in late spring and summer months. Expanded hypoxic volumes under higher nitrogen loads were associated with increases in water-column production and respiration in seaward regions of Chesapeake Bay during summer (June to August) months. Analysis of the 10-year model run with realistic hydrodynamics and nutrient loading revealed a similar pattern, emphasizing phytoplankton growth during summer in more nitrogen-limited, lower-Bay regions as a mechanism supporting elevated summer hypoxic volumes. This analysis (1) presents ROMS-RCA as a tool for investigating linked biogeochemical processes in coastal

  13. Effect of sulfidogenesis cycling on the biogeochemical process in arsenic-enriched aquifers in the Lanyang Plain of Taiwan: Evidence from a sulfur isotope study

    NASA Astrophysics Data System (ADS)

    Kao, Yu-Hsuan; Liu, Chen-Wuing; Wang, Pei-Ling; Liao, Chung-Min

    2015-09-01

    This study evaluated the biogeochemical interactions between arsenic (As) and sulfur (S) in groundwater to understand the natural and anthropogenic influences of S redox processes on As mobilization in the Lanyang Plain, Taiwan. Cl- and the sulfate isotopic composition (δ34S[SO4]) were selected as conservative tracers. River water and saline seawater were considered as end members in the binary mixing model. Thirty-two groundwater samples were divided into four types of groundwater (I, pyrite-oxidation; II, iron- and sulfate-reducing; III, sulfate-reducing; and IV, anthropogenic and others). The binary mixing model coupled with discriminant analysis was applied to yield a classification with 97% correctness, indicating that the DO/ORP values and δ34S[SO4] and Fe2+ concentrations are effective redox-sensitive indicators. Type I groundwater is mostly located in a mountainous recharge area where pyrite oxidation is the major geochemical process. A high 18O enrichment factor (ε[SO4-H2O]) and high 34S enrichment factor (ε34S[FeS2-SO4]) indicate that disproportionation and dissimilatory sulfate reduction are both involved in Type II and Type III groundwater. The process of bacterial sulfate reduction may coprecipitate and sequester As, a mechanism that is unlikely to occur in Type II groundwater. The presence of high As and Fe2+ concentrations and enriched δ34S[SO4] in Type II groundwater suggest that biogeochemical reactions occurred under anaerobic conditions. The reductive dissolution of As-bearing Fe oxyhydroxides together with microbial disproportionation of sulfur explains the substantial correlations among the high As concentration and enriched δ34S[SO4] and Fe2+ concentrations in the iron- and sulfate-reducing zone (Type II). The As concentration in Type III groundwater (sulfate-reducing) is lower than that in Type II groundwater because of bacterial sulfate reduction and coprecipitation with As. Furthermore, the dissolution of sulfate minerals is not the

  14. Extracellular enzyme activity and microbial diversity measured on seafloor exposed basalts from Loihi seamount indicate the importance of basalts to global biogeochemical cycling.

    PubMed

    Jacobson Meyers, Myrna E; Sylvan, Jason B; Edwards, Katrina J

    2014-08-01

    Seafloor basalts are widely distributed and host diverse prokaryotic communities, but no data exist concerning the metabolic rates of the resident microbial communities. We present here potential extracellular enzyme activities of leucine aminopeptidase (LAP) and alkaline phosphatase (AP) measured on basalt samples from different locations on Loihi Seamount, HI, coupled with analysis of prokaryotic biomass and pyrosequencing of the bacterial 16S rRNA gene. The community maximum potential enzyme activity (Vmax) of LAP ranged from 0.47 to 0.90 nmol (g rock)(-1) h(-1); the Vmax for AP was 28 to 60 nmol (g rock)(-1) h(-1). The Km of LAP ranged from 26 to 33 μM, while the Km for AP was 2 to 7 μM. Bacterial communities on Loihi basalts were comprised primarily of Alpha-, Delta-, andGammaproteobacteria, Bacteroidetes, and Planctomycetes. The putative ability to produce LAP is evenly distributed across the most commonly detected bacterial orders, but the ability to produce AP is likely dominated by bacteria in the orders Xanthomonadales, Flavobacteriales, and Planctomycetales. The enzyme activities on Loihi basalts were compared to those of other marine environments that have been studied and were found to be similar in magnitude to those from continental shelf sediments and orders of magnitude higher than any measured in the water column, demonstrating that the potential for exposed basalts to transform organic matter is substantial. We propose that microbial communities on basaltic rock play a significant, quantifiable role in benthic biogeochemical processes. PMID:24907315

  15. Extracellular Enzyme Activity and Microbial Diversity Measured on Seafloor Exposed Basalts from Loihi Seamount Indicate the Importance of Basalts to Global Biogeochemical Cycling

    PubMed Central

    Sylvan, Jason B.; Edwards, Katrina J.

    2014-01-01

    Seafloor basalts are widely distributed and host diverse prokaryotic communities, but no data exist concerning the metabolic rates of the resident microbial communities. We present here potential extracellular enzyme activities of leucine aminopeptidase (LAP) and alkaline phosphatase (AP) measured on basalt samples from different locations on Loihi Seamount, HI, coupled with analysis of prokaryotic biomass and pyrosequencing of the bacterial 16S rRNA gene. The community maximum potential enzyme activity (Vmax) of LAP ranged from 0.47 to 0.90 nmol (g rock)−1 h−1; the Vmax for AP was 28 to 60 nmol (g rock)−1 h−1. The Km of LAP ranged from 26 to 33 μM, while the Km for AP was 2 to 7 μM. Bacterial communities on Loihi basalts were comprised primarily of Alpha-, Delta-, andGammaproteobacteria, Bacteroidetes, and Planctomycetes. The putative ability to produce LAP is evenly distributed across the most commonly detected bacterial orders, but the ability to produce AP is likely dominated by bacteria in the orders Xanthomonadales, Flavobacteriales, and Planctomycetales. The enzyme activities on Loihi basalts were compared to those of other marine environments that have been studied and were found to be similar in magnitude to those from continental shelf sediments and orders of magnitude higher than any measured in the water column, demonstrating that the potential for exposed basalts to transform organic matter is substantial. We propose that microbial communities on basaltic rock play a significant, quantifiable role in benthic biogeochemical processes. PMID:24907315

  16. Biogeochemical factors affecting the distribution, speciation, and transport of Hg species in the Deûle and Lys Rivers (Northern France).

    PubMed

    Daye, Mirna; Kadlecova, Milada; Ouddane, Baghdad

    2015-02-01

    The Deûle River is a highly polluted River by heavy metals caused by the historical discharges of ore minerals from the former ore smelter "Metaleurop." The potential mercury (Hg) pollution in the Deûle River implicates the importance of Hg distribution study in the river. As well as to configure the different biogeochemical factors that control the distribution and the potential transport of Hg to distant places. Four different sites were studied as follows: D-A (Deûle River, a site located upstream the river), D-B (Deûle River, a site located near a Zn, Pb, Cu, and Ni smelter that closed in 2003), L-C (Lys River, a site located upstream the confluence of the Deûle River with Lys River), and L-D (downstream the rivers confluence). Different Hg analyses were performed including total mercury in sediment (HgTS), methylmercury (MeHg) in sediment, total mercury in pore water (HgTPW), total mercury in surface water (HgTD), and total suspended particulate Hg in water (HgTP). HgTS decreases downstream from the Deûle River sites with a mean value of 11 ± 0.34 mg/kg to Lys River site (L-D) with a mean value of 0.53 ± 0.02 mg/kg at the confluence. The unaffected side of the Lys River, localized before the confluence (L-C), is characterized by low HgTS of an average value of 0.042 ± 0.003 mg/kg and high % MeHg reaching 4.2 %. Whereas, the highly contaminated Deûle sites are designated by low % MeHg with an average value of 0.053 %. Low pristine environments like that found in L-C site with more favorable biogeochemical conditions of lower concentrations of HgTS, sulfides, and Corg host more active biotic methylation than that of the highly polluted Deûle sites with high concentrations of HgTS and sulfides concentrations. Methylation in D-B (the closet site to Metaleurop smelter) is an old and recent methylation activity that has contributed to MeHg accumulation in the sediments as opposed to the exclusive recent events of methylation in Lys sites. Me

  17. Low-intensity cycling affects the muscle activation pattern of consequent countermovement jumps.

    PubMed

    Marquez, Gonzalo J; Mon, Javier; Acero, Rafael M; Sanchez, Jose A; Fernandez-del-Olmo, Miguel

    2009-08-01

    Players (eg, basketball, soccer, and football) often use a static bicycle during a game to maintain warming. However, the effectiveness of this procedure has not been addressed in the literature. Thus, it remains unknown whether low-intensity cycling movement can affect explosive movement performance. In this study, 10 male subjects performed countermovement jumps before and after a 15-minutes cycling bout at 35% of their maximal power output. Three sessions were tested for 3 different cadences of cycling: freely chosen cadence, 20% lower than freely chosen cadence (FCC-20%), and 20% higher than freely chosen cadence (FCC+20%). Jump height, kinematics, and electromyogram were recorded simultaneously during the countermovement jumps. The results showed a significant decreasing in the height of countermovement jump after cycling at freely chosen cadence and FCC-20% (p = 0.03 and p = 0.04, respectively), but not for FCC+20% cadences. The electromyographic parameters suggest that changes in the countermovement jump after cycling can be attributed to alteration of the pattern of activation and may be modulated by the preceding cycling cadence. Our study indicates that to avoid a possible negative effect of the cycling in the subsequent explosive movements, a cadence 20% higher than the preferred cadence must be used.

  18. Biogeochemical Processes in Microbial Ecosystems

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, Donald L. (Technical Monitor)

    2001-01-01

    The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial population, and their metabolic properties. Photosynthetic microbial mats offer an opportunity to define holistic functionality at the millimeter scale. At the same time, their Biogeochemistry contributes to environmental processes on a planetary scale. These mats are possibly direct descendents of the most ancient biological communities; communities in which oxygenic photosynthesis might have been invented. Mats provide one of the best natural systems to study how microbial populations associate to control dynamic biogeochemical gradients. These are self-sustaining, complete ecosystems in which light energy absorbed over a diel (24 hour) cycle drives the synthesis of spatially-organized, diverse biomass. Tightly-coupled microorganisms in the mat have specialized metabolisms that catalyze transformations of carbon, nitrogen. sulfur, and a host of other elements.

  19. Ge/Si, Ca/Sr and 87Sr/86Sr tracers of biogeochemical sources and cycling of Si and Ca at the Shale Hills CZO

    NASA Astrophysics Data System (ADS)

    Derry, L. A.; Meek, K.; Sparks, J. P.

    2014-12-01

    Plant uptake and cycling of nutrients is commonly the largest flux of nutrients in terrestrial ecosystems. Hydrologic and other losses are offset by inputs from atmospheric deposition and weathering. We measured elemental and isotopic compositions from soil solution, soil exchange complex, leaves and sapwater from two canopy species, soil and rock samples, and stream and ground waters at the Shale Hills CZO. Xylem fluid and leaf samples have similar Ge/Si < 1 μmo/mol, consistent with fractionation at the root-soil water interface. Ge/Si in soil waters is higher Ge/Si near the surface and increases over the growing season, indicating preferential uptake of Si. Ca/Sr in leaves of Quercus are significantly higher (450±150) than for Acer (200±100), and Ca/Sr is generally higher in leaves than in xylem, consistent with Ca uptake during transpiration. 87Sr/86Sr in both are similar for a given site, implying that the trees access similar pools of Sr and Ca, although there are site-to-site differences. Data on litterfall rates and transpiration rates yield similar estimates of plant cycling of Ca and Si. 87Sr/86Sr in soil solutions from ridgtop and swale sites are well explained by mixing Sr derived from shale and atmospheric deposition. Valley bottom soil solutions and stream and groundwater samples include Sr and Ca derived from dissolution of diagenetic carbonates, found in drill cuttings. A preliminary estimate of the Sr and Ca stream fluxes and isotopic mass balances imply propagation of a carbonate weathering front of ca. 200 m/Ma, faster than previously reported regolith weathering advance rates based on on cosmogenic nuclides and U series (Jin et al., 2010; Ma et al., 2010). These rates are not strictly comparable and differences are at least in part consistent with the greater depth of the carbonate weathering front (Brantley et al, 2013). The data for Ca, Sr, Si and Ge in soil, soil solutions and stream waters reflects the interaction of slower weathering

  20. The role of amoeboid protists and the microbial community in moss-rich terrestrial ecosystems: biogeochemical implications for the carbon budget and carbon cycle, especially at higher latitudes.

    PubMed

    Anderson, O Roger

    2008-01-01

    Moss-rich terrestrial communities are widely distributed in low- and high-latitude environments, covering vast surface areas in the boreal forests and tundra. The microbial biota in these organic-rich communities may contribute substantially to the carbon budget of terrestrial communities and the carbon cycle on a global scale. Recent research is reported on the carbon content of microbial communities in some temperate and high-latitude moss communities. The total carbon content and potential respiratory carbon dioxide (CO(2)) efflux is reported for bacteria, microflagellates, naked amoebae, and testate amoebae within sampling sites at a northeastern forest and the tundra at Toolik, Alaska. Quantitative models of the predicted total CO(2) efflux from the microbes, based on microscopic observations and enumeration of the microbiota in samples from the research sites, are described and predictions are compared with published field-based data of CO(2) efflux. The significance of the predictions for climate change and global warming are discussed.

  1. Loss of phytotelmata due to an invasive bromeliad-eating weevil and its potential effects on faunal diversity and biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Cooper, Teresa M.; Frank, J. Howard; Cave, Ronald D.

    2014-01-01

    Epiphytic tank bromeliads are important ecosystem engineers because they form phytotelmata that create habitat, increase species richness and abundance, create water sources and nutrient reservoirs in the canopy, and collect and redirect nutrients in forest ecosystems. Native bromeliad populations have been devastated in Florida (USA) because an invasive bromeliad-eating weevil (Metamasius callizona) has been destroying the plants. Tillandsia utriculata is a tank bromeliad that was once widespread from central to south Florida. Its populations have been hit hard by the weevil and are declining rapidly. This study quantifies the mortality rate caused by the weevil in a population of T. utriculata at the Enchanted Forest Sanctuary in central Florida and estimates the associated loss of phytotelmata. Estimations of phytotelmata were calculated for the T. utriculata baseline population, the population at 6 months into the study when 87% of the population was destroyed, and at the end of the study when less than 3% of the bromeliad population remained (99% of all deaths were caused by the weevil). The baseline population contained 16,758 L of water. At six months, there were 3180 L, and at the end of the study, there were 408 L. The loss of phytotelmata results in the loss of habitat, a decrease in biological diversity, and altered water and nutrient cycles and availability.

  2. Exercise VE and physical performance at altitude are not affected by menstrual cycle phase.

    PubMed

    Beidleman, B A; Rock, P B; Muza, S R; Fulco, C S; Forte, V A; Cymerman, A

    1999-05-01

    We hypothesized that progesterone-mediated ventilatory stimulation during the midluteal phase of the menstrual cycle would increase exercise minute ventilation (VE; l/min) at sea level (SL) and with acute altitude (AA) exposure but would only increase arterial O2 saturation (SaO2, %) with AA exposure. We further hypothesized that an increased exercise SaO2 with AA exposure would enhance O2 transport and improve both peak O2 uptake (VO2 peak; ml x kg-1 x min-1) and submaximal exercise time to exhaustion (Exh; min) in the midluteal phase. Eight female lowlanders [33 +/- 3 (mean +/- SD) yr, 58 +/- 6 kg] completed a VO2 peak and Exh test at 70% of their altitude-specific VO2 peak at SL and with AA exposure to 4,300 m in a hypobaric chamber (446 mmHg) in their early follicular and midluteal phases. Progesterone levels increased (P < 0.05) approximately 20-fold from the early follicular to midluteal phase at SL and AA. Peak VE (101 +/- 17) and submaximal VE (55 +/- 9) were not affected by cycle phase or altitude. Submaximal SaO2 did not differ between cycle phases at SL, but it was 3% higher during the midluteal phase with AA exposure. Neither VO2 peak nor Exh time was affected by cycle phase at SL or AA. We conclude that, despite significantly increased progesterone levels in the midluteal phase, exercise VE is not increased at SL or AA. Moreover, neither maximal nor submaximal exercise performance is affected by menstrual cycle phase at SL or AA.

  3. Tracing Sources and Biogeochemical Cycling of Ammonium and Nitrate in the Sacramento River and northern San Francisco Bay using Stable Isotope Techniques

    NASA Astrophysics Data System (ADS)

    Kendall, C.; Young, M. B.; Silva, S. R.; Kraus, T. E.; Parker, A. E.

    2009-12-01

    One of the potential causes of declines in several species of fish in the San Francisco Bay Estuary ecosystem is NH4-inhibition of algal productivity in the Delta and Suisun Bay, which is hypothesized to cause pelagic organism decline via cascading trophic interactions. Hence, there is considerable interest in determining the relative contributions of NH4 from waste water treatment plants (WWTPs) and from other kinds of agricultural, wetlands, and urban land uses to the ecosystem, and evaluating their effects on algal growth. N cycling within the ecosystem, including mineralization of organic N, nitrification, assimilation of NH4 and NO3, and other processes might mask the effects of specific sources and control the concentrations and speciation of N. Hence, there is a need for better understanding of N dynamics as well as sources in this ecosystem. To address these issues, we have employed a multi-isotope approach to investigate N source, fate, and transport in the Sacramento River, Delta, and northern Bay. Approximately 25 samples were collected during each of 3 transects along a 100 mile section of the ecosystem in 2008-2009, and analyzed for nutrients, chlorophyll, various physical parameters, NH4-δ15N, NO3-δ15N and δ18O, DIC-δ13C, DOC-δ13C, water-δ18O and δ2H, and seston-δ15N, δ13C, δ34S, and C:N. These data showed many distinctive downstream changes. In particular, NH4 concentrations increased sharply downstream of the Sacramento WWTP, and remained high for over 20 miles before starting a steady decline at ~20 miles upstream of the confluence. The decline in NH4 is mirrored by an increase in NO3 concentrations, and the changes in isotopic composition confirmed that the dominant N cycling process in this reach of the river was nitrification. NH4-δ15N values near the WWTP are ~ +7 permil, and increased downstream to over +20 permil. NO3-δ15N upstream of the WWTP is ~ +6 permil, and ranges between +3 and +9 permil downstream. The downstream changes

  4. The acid and alkalinity budgets of weathering in the Andes-Amazon system: Insights into the erosional control of global biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Torres, Mark A.; West, A. Joshua; Clark, Kathryn E.; Paris, Guillaume; Bouchez, Julien; Ponton, Camilo; Feakins, Sarah J.; Galy, Valier; Adkins, Jess F.

    2016-09-01

    The correlation between chemical weathering fluxes and denudation rates suggests that tectonic activity can force variations in atmospheric pCO2 by modulating weathering fluxes. However, the effect of weathering on pCO2 is not solely determined by the total mass flux. Instead, the effect of weathering on pCO2 also depends upon the balance between 1) alkalinity generation by carbonate and silicate mineral dissolution and 2) sulfuric acid generation by the oxidation of sulfide minerals. In this study, we explore how the balance between acid and alkalinity generation varies with tectonic uplift to better understand the links between tectonics and the long-term carbon cycle. To trace weathering reactions across the transition from the Peruvian Andes to the Amazonian foreland basin, we measured a suite of elemental concentrations (Na, K, Ca, Mg, Sr, Si, Li, SO4, and Cl) and isotopic ratios (87Sr/86Sr and δ34S) on both dissolved and solid phase samples. Using an inverse model, we quantitatively link systematic changes in solute geochemistry with elevation to downstream declines in sulfuric acid weathering as well as the proportion of cations sourced from silicates. With a new carbonate-system framework, we show that weathering in the Andes Mountains is a CO2 source whereas foreland weathering is a CO2 sink. These results are consistent with the theoretical expectation that the ratio of sulfide oxidation to silicate weathering increases with increasing erosion. Altogether, our results suggest that the effect of tectonically-enhanced weathering on atmospheric pCO2 is strongly modulated by sulfide mineral oxidation.

  5. Evolution of biogeochemical cycling of phosphorus during 45~50 Ma revealed by sequential extraction analysis of IODP Expedition 302 cores from the Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Hashimoto, S.; Yamaguchi, K. E.; Takahashi, K.

    2012-12-01

    The modern Arctic Ocean plays crucial roles in controlling global climate system with the driving force of global thermohaline circulation through the formation of dense deep water and high albedo due to the presence of perennial sea-ice. However, the Arctic sea-ice has not always existed in the past. Integrated Ocean Drilling Program (IODP) Expedition 302 Arctic Coring Expedition (ACEX) has clarified that global warming (water temperature: ca. 14~16○C) during 48~49 Ma Azolla Event induced the loss of sea-ice and desalination of surface ocean, and that sea-ice formed again some million years later (45 Ma). In the Arctic Ocean, warming and cooling events repeated over and over (e.g., Brinkhuis et al., 2006; Moran et al., 2006; März et al., 2010). Large variations in the extent of thermohaline circulation through time often caused stagnation of seawater and appearance of anaerobic environment where hydrogen sulfide was produced by bacterial sulfate reduction. Ogawa et al. (2009) confirmed occurrence of framboidal pyrite in the ACEX sediments, and suggested that the Arctic Ocean at the time was anoxic, analogous to the modern Black Sea, mainly based on sulfur isotope analysis. To further clarify the variations in the nutrient status of the Arctic Ocean, we focus on the geochemical cycle of phosphorus. We performed sequential extraction analysis of sedimentary phosphorus in the ACEX sediments, using the method that we improvped based on the original SEDEX method by Ruttenberg (1992) and Schenau et al. (2000). In our method, phosphorus fractions are divided into five forms; (1) absorbed P, (2) Feoxide-P, (4) carbonate fluorapatite (CFAP) + CaCO3-P + hydroxylapatite (HAP), (4) detrital P, and (5) organic P. Schenau et al. (2000) divided the (3) fraction into non-biological CFAP and biological HAP and CaCO3-P. When the Arctic Ocean was closed and in its warming period, the water mass was most likely stratified and an anaerobic condition would have prevailed where

  6. Authigenic minerals related to carbon and sulfur biogeochemical cycling from deep-sea active methane seeps offshore South-West Africa

    NASA Astrophysics Data System (ADS)

    Pierre, C.; Blanc-Valleron, M.; Demange, J.; Boudouma, O.; Pape, T.; Himmler, T.; Fekete, N.; Spiess, V.

    2011-12-01

    The South-West African continental margin is well known for occurrences of active methane-rich fluid seeps that are associated with seafloor pockmarks in a broad range of water depths, from the shelf to the deep basins. High gas flares in the water column, luxurious oases of benthic fauna, gas hydrate accumulations and diagenetic carbonate crusts have been observed at these seeps. During the M76/3a expedition of R/V METEOR (summer 2008) gravity cores recovered abundant authigenic carbonate concretions from five pockmarks of the South-West African margin including previously studied sites (Hydrate Hole, Worm Hole, Regab Pockmark) and two sites (Deep Hole, Baboon Cluster) newly discovered during the cruise. Carbonate concretions were mostly associated to sediments settled by seep-associated benthic macrofauna and bearing shallow gas hydrates. We present new results of the comprehensive analysis of the mineralogy and isotope geochemistry of the diagenetic carbonates sampled in the five pockmarks. The mineralogy of authigenic carbonates is dominated by magnesian calcite and aragonite, associated occasionally with dolomite. The oxygen and carbon isotopic compositions of authigenic carbonates (+2.4 < δ18O % V-PDB < +6.2 ; -61.0 < δ13C % V-PDB < -40.1) indicate that microbial anaerobic oxidation of methane (AOM) was the main process controling carbonate precipitation within sub-seafloor sediments deposited from the glacial-time up to the present. The frequent occurrence of diagenetic gypsum crystals within the sediments demonstrates that bio-irrigation with oxygenated bottom water by the burrowing activity of benthic fauna caused the secondary oxidation of reduced sulfur (hydrogen sulfide and pyrite) that was produced by sulfate reducting bacteria as a by-product of AOM; during the sulfide oxidation process, the released acidity induced the partial dissolution of carbonates. Our results demonstrate also the strong link that existed between the carbon and sulfur cycles

  7. The impact of eutrophication on the biogeochemical cycling of mercury species in a reservoir: a case study from Hongfeng Reservoir, Guizhou, China.

    PubMed

    He, Tianrong; Feng, Xinbin; Guo, Yanna; Qiu, Guangle; Li, Zhonggen; Liang, Lian; Lu, Julia

    2008-07-01

    The mercury distribution and speciation in the water column were investigated from November 2003 to September 2004. The distribution and concentrations of total mercury (THg) and particulate mercury (PHg) showed that algae had a large capacity to bind mercury in late spring (e.g. in May). It is shown that dissolved gaseous mercury (DGM) concentrations may also be affected by algae activities. The MeHg profile in the water column at a highly eutrophied site in Hongfeng Reservoir demonstrated that most of the MeHg was produced in the hypolimnion, whereas the MeHg profile pattern at another site with less eutrophication indicated that MeHg in water was largely ascribed to release from sediment. In September, the outflow of the reservoir was enriched with MeHg, which was 5.5 times higher than that in the inflows. The discharge of MeHg-concentrated water from the anoxic hypolimnion in the reservoir may pose a risk to downstream fauna.

  8. The impact of eutrophication on the biogeochemical cycling of mercury species in a reservoir: a case study from Hongfeng Reservoir, Guizhou, China.

    PubMed

    He, Tianrong; Feng, Xinbin; Guo, Yanna; Qiu, Guangle; Li, Zhonggen; Liang, Lian; Lu, Julia

    2008-07-01

    The mercury distribution and speciation in the water column were investigated from November 2003 to September 2004. The distribution and concentrations of total mercury (THg) and particulate mercury (PHg) showed that algae had a large capacity to bind mercury in late spring (e.g. in May). It is shown that dissolved gaseous mercury (DGM) concentrations may also be affected by algae activities. The MeHg profile in the water column at a highly eutrophied site in Hongfeng Reservoir demonstrated that most of the MeHg was produced in the hypolimnion, whereas the MeHg profile pattern at another site with less eutrophication indicated that MeHg in water was largely ascribed to release from sediment. In September, the outflow of the reservoir was enriched with MeHg, which was 5.5 times higher than that in the inflows. The discharge of MeHg-concentrated water from the anoxic hypolimnion in the reservoir may pose a risk to downstream fauna. PMID:18158204

  9. Menstrual cycle phase does not affect sympathetic neural activity in women with postural orthostatic tachycardia syndrome

    PubMed Central

    Stickford, Abigail SL; VanGundy, Tiffany B; Levine, Benjamin D; Fu, Qi

    2015-01-01

    Abstract Patients with the postural orthostatic tachycardia syndrome (POTS) are primarily premenopausal women, which may be attributed to female sex hormones. We tested the hypothesis that hormonal fluctuations of the menstrual cycle alter sympathetic neural activity and orthostatic tolerance in POTS women. Ten POTS women were studied during the early follicular (EF) and mid-luteal (ML) phases of the menstrual cycle. Haemodynamics and muscle sympathetic nerve activity (MSNA) were measured when supine, during 60 deg upright tilt for 45 min or until presyncope, and during the cold pressor test (CPT) and Valsalva manoeuvres. Blood pressure and total peripheral resistance were higher during rest and tilting in the ML than EF phase; however, heart rate, stroke volume and cardiac output were similar between phases. There were no mean ± SD differences in MSNA burst frequency (8 ± 8 EF phase vs. 10 ± 10 bursts min–1 ML phase at rest; 34 ± 15 EF phase vs. 36 ± 16 bursts min–1 ML phase at 5 min tilt), burst incidence or total activity, nor any differences in the cardiovagal and sympathetic baroreflex sensitivities between phases under any condition. The incidence of presyncope was also the same between phases. There were no differences in haemodynamic or sympathetic responses to CPT or Valsalva. These results suggest that the menstrual cycle does not affect sympathetic neural activity but modulates blood pressure and vasoconstriction in POTS women during tilting. Thus, factors other than sympathetic neural activity are probably responsible for the symptoms of orthostatic intolerance across the menstrual cycle in women with POTS. Key points Women with the postural orthostatic tachycardia syndrome (POTS) report fluctuations in orthostatic tolerance throughout the menstrual cycle. The mechanism(s) underlying blood pressure control across the menstrual cycle in women with POTS are unknown. The findings of the present study indicate that the menstrual

  10. Climate change effects on watershed hydrological and biogeochemical processes

    EPA Science Inventory

    Projected changes in climate are widely expected to alter watershed processes. However, the extent of these changes is difficult to predict because complex interactions among affected hydrological and biogeochemical processes will likely play out over many decades and spatial sc...

  11. Modeling greenhouse gas emissions (CO2, N2O, CH4) from managed arable soils with a fully coupled hydrology-biogeochemical modeling system simulating water and nutrient transport and associated carbon and nitrogen cycling at catchment scale

    NASA Astrophysics Data System (ADS)

    Klatt, Steffen; Haas, Edwin; Kraus, David; Kiese, Ralf; Butterbach-Bahl, Klaus; Kraft, Philipp; Plesca, Ina; Breuer, Lutz; Zhu, Bo; Zhou, Minghua; Zhang, Wei; Zheng, Xunhua; Wlotzka, Martin; Heuveline, Vincent

    2014-05-01

    The use of mineral nitrogen fertilizer sustains the global food production and therefore the livelihood of human kind. The rise in world population will put pressure on the global agricultural system to increase its productivity leading most likely to an intensification of mineral nitrogen fertilizer use. The fate of excess nitrogen and its distribution within landscapes is manifold. Process knowledge on the site scale has rapidly grown in recent years and models have been developed to simulate carbon and nitrogen cycling in managed ecosystems on the site scale. Despite first regional studies, the carbon and nitrogen cycling on the landscape or catchment scale is not fully understood. In this study we present a newly developed modelling approach by coupling the fully distributed hydrology model CMF (catchment modelling framework) to the process based regional ecosystem model LandscapeDNDC for the investigation of hydrological processes and carbon and nitrogen transport and cycling, with a focus on nutrient displacement and resulting greenhouse gas emissions in a small catchment at the Yanting Agro-ecological Experimental Station of Purple Soil, Sichuan province, China. The catchment hosts cypress forests on the outer regions, arable fields on the sloping croplands cultivated with wheat-maize rotations and paddy rice fields in the lowland. The catchment consists of 300 polygons vertically stratified into 10 soil layers. Ecosystem states (soil water content and nutrients) and fluxes (evapotranspiration) are exchanged between the models at high temporal scales (hourly to daily) forming a 3-dimensional model application. The water flux and nutrients transport in the soil is modelled using a 3D Richards/Darcy approach for subsurface fluxes with a kinematic wave approach for surface water runoff and the evapotranspiration is based on Penman-Monteith. Biogeochemical processes are modelled by LandscapeDNDC, including soil microclimate, plant growth and biomass allocation

  12. Manganese oxidation by bacteria: biogeochemical aspects.

    PubMed

    Sujith, P P; Bharathi, P A Loka

    2011-01-01

    Manganese is an essential trace metal that is not as readily oxidizable like iron. Several bacterial groups posses the ability to oxidize Mn effectively competing with chemical oxidation. The oxides of Mn are the strongest of the oxidants, next to oxygen in the aquatic environment and therefore control the fate of several elements. Mn oxidizing bacteria have a suit of enzymes that not only help to scavenge Mn but also other associated elements, thus playing a crucial role in biogeochemical cycles. This article reviews the importance of manganese and its interaction with microorganisms in the oxidative Mn cycle in aquatic realms.

  13. Microbial H2 cycling does not affect δ2H values of ground water

    USGS Publications Warehouse

    Landmeyer, J.E.; Chapelle, F.H.; Bradley, P.M.

    2000-01-01

    Stable hydrogen-isotope values of ground water (δ2H) and dissolved hydrogen concentrations (H(2(aq)) were quantified in a petroleum-hydrocarbon contaminated aquifer to determine whether the production/consumption of H2 by subsurface microorganisms affects ground water &delta2H values. The range of &delta2H observed in monitoring wells sampled (-27.8 ‰c to -15.5 ‰c) was best explained, however, by seasonal differences in recharge temperature as indicated using ground water δ18O values, rather than isotopic exchange reactions involving the microbial cycling of H2 during anaerobic petroleum-hydrocarbon biodegradation. The absence of a measurable hydrogen-isotope exchange between microbially cycled H2 and ground water reflects the fact that the amount of H2 available from the anaerobic decomposition of petroleum hydrocarbons is small relative to the amount of hydrogen present in water, even though milligram per liter concentrations of readily biodegradable contaminants are present at the study site. Additionally, isotopic fractionation calculations indicate that in order for H2 cycling processes to affect δ2H values of ground water, relatively high concentrations of H2 (>0.080 M) would have to be maintained, considerably higher than the 0.2 to 26 nM present at this site and characteristic of anaerobic conditions in general. These observations suggest that the conventional approach of using δ2H and δ18O values to determine recharge history is appropriate even for those ground water systems characterized by anaerobic conditions and extensive microbial H2 cycling.

  14. Factors affecting gestation length and estrus cycle characteristics in Spanish donkey breeds reared in southern Spain.

    PubMed

    Galisteo, J; Perez-Marin, C C

    2010-08-01

    This paper investigated gestation length and estrus cycle characteristics in three different Spanish donkey breeds (Andalusian, Zamorano-Leones, and Catalonian) kept on farm conditions in southern Spain, using data for ten consecutive breeding seasons. Gestation length was measured in 58 pregnancies. Ovarian ultrasonography was used to detect the ovulation, in order to ascertain true gestation length (ovulation-parturition). Pregnancy was diagnosed approximately 14-18 d after ovulation and confirmed on approximately day 60. Average gestation length was 362 +/-15.3 (SD) d, and no significant differences were observed between the three different breeds. Breeding season had a significant effect (P < 0.01), with longer gestation lengths when jennies were covered during the early period. Breed, age of jenny, year of birth, foal gender, month of breeding, and type of gestation had no significant effect on gestation length. After parturition, foal-heat was detected in 53.8% of the postpartum cycles studied (n = 78), and ovulation occurred on day 13.2 +/- 2.7. The duration of foal-heat was 4.7 +/-1.7 d, with a pregnancy rate of 40.5%. When subsequent estrus cycles were analyzed, the interovulatory interval (n = 68) and estrus duration (n = 258) were extended to a mean 23.8 +/- 3.5 and 5.7 +/- 2.2 d, respectively. Both variables were influenced by the year of study (P < 0.03 and P < 0.001), whereas month and season of ovulation (P < 0.005 and P < 0.009, respectively) affected only interovulatory intervals. Estrus duration was significantly longer than that observed at the foal-heat (P < 0.006), and the pregnancy rate was 65.8%. This study provides reference values for true gestation length and estrus cycle characteristics in Spanish jennies. Breeding season affected gestation length in farm conditions. Also, seasonal influence was observed on the length of the estrus cycle (i.e., interovulatory interval), although foal-heat was not affected by environmental factors.

  15. Change in photoperiodic cycle affects life span in a prosimian primate (Microcebus murinus).

    PubMed

    Perret, M

    1997-04-01

    The lesser mouse lemur, a small prosimian primate, exhibits seasonal rhythms strictly controlled by photoperiodic variations. Exposure to day lengths shorter than 12 h results in complete sexual rest, fattening, lethargy, and reduced behavioral activities; whereas exposure to day lengths greater than 12 h induces sexual activity, an increase in behavioral activities, and high hormonal levels. The objective of this study was to test whether long-term acceleration of seasonal rhythms may affect survival and longevity of this primate. In captivity, acceleration of seasonal rhythms was obtained by exposing the animals to an accelerated photoperiodic regimen consisting of 5 months of long photoperiod followed by 3 months of short photoperiod. The age-specific survival rate in animals exposed from birth to accelerated photoperiodic conditions (n = 89) was compared to the age-specific survival rate of animals maintained under a natural photoperiod (n = 68). Independent of sexes, the mean life span (45.5 +/- 2.1 months) and maximal survival (79.3 +/- 3.3 months) were significantly (p < .01) shortened in mouse lemurs exposed to the accelerated photoperiodic cycle compared to those in animals living under annual photoperiod (63.2 +/- 2.5 and 98 +/- 3.9 months for mean life span and maximal survival, respectively). This reduction of about 30% of life span was not accompanied by a desynchronization of biological rhythms under photoperiodic control and was not related to an increase in reproduction or in duration of time spent in active conditions. However, when the number of seasonal cycles experienced by 1 individual is considered rather than chronological age, the mean life span was 5 seasonal cycles and maximum survival reached 9-10 cycles, independent of sex or of photoperiodic regimen. These results suggest that in mouse lemurs, as in other seasonal mammals, longevity may depend on the expression of a fixed number of seasonal cycles rather than on a fixed biological age

  16. Oral contraceptive cycle phase does not affect 200-m swim time trial performance.

    PubMed

    Rechichi, Claire; Dawson, Brian

    2012-04-01

    The purpose of this study was to examine whether swimming performance was affected by acute hormonal fluctuation within a monophasic oral contraceptive (OC) cycle. Six competitive swimmers and water polo players completed a 200-m time trial at 3 time points of a single OC cycle: during the consumption phase (CONS), early (WITH1), and late in the withdrawal phase (WITH2). Split times and stroke rate were recorded during the time trial, and heart rate, blood lactate, glucose, and pH were measured after each performance test. Resting endogenous serum estradiol and progesterone concentrations were also assessed. No significant differences were observed between phases for body composition, 200-m swim time, mean stroke rate, peak heart rate, or blood glucose (p > 0.05). The mean peak blood lactate was significantly lower during WITH2 (9.9 ± 3.0 mmol·L(-1)) compared with that of CONS (12.5 ± 3.0 mmol·L(-1)) and mean pH higher during WITH2 (7.183 ± 0.111) compared with that of CONS (7.144 ± 0.092). Serum estradiol levels were significantly greater during WITH2 compared with that during WITH1 and CONS, but there was no difference in serum progesterone levels. These results demonstrate that for monophasic OC users, cycle phase does not impact the 200-m swimming performance. There was a reduction in blood lactate and an increase in pH during the withdrawal phase, possibly because of an increase in fluid retention, plasma volume, and cellular alkalosis. Therefore, female 200-m swimmers taking a monophasic OC need not be concerned by the phase of their cycle with regard to competition and optimizing performance. However, coaches and scientists should exercise caution when interpreting blood lactate results obtained from swimming tests and consider controlling for cycle phase for athletes taking an OC. PMID:22446669

  17. Terminal Proterozoic reorganization of biogeochemical cycles

    NASA Technical Reports Server (NTRS)

    Logan, G. A.; Hayes, J. M.; Hieshima, G. B.; Summons, R. E.

    1995-01-01

    The Proterozoic aeon (2,500-540 million years ago) saw episodic increases in atmospheric oxygen content, the evolution of multicellular life and, at its close, an enormous radiation of animal diversity. These profound biological and environmental changes must have been linked, but the underlying mechanisms have been obscure. Here we show that hydrocarbons extracted from Proterozoic sediments in several locations worldwide are derived mainly from bacteria or other heterotrophs rather than from photosynthetic organisms. Biodegradation of algal products in sedimenting matter was therefore unusually complete, indicating that organic material was extensively reworked as it sank slowly through the water column. We propose that a significant proportion of this reworking will have been mediated by sulphate-reducing bacteria, forming sulphide. The production of sulphide and consumption of oxygen near the ocean surface will have inhibited transport of O2 to the deep ocean. We find that preservation of algal-lipid skeletons improves at the beginning of the Cambrian, reflecting the increase in transport by rapidly sinking faecal pellets. We suggest that this rapid removal of organic matter will have increased oxygenation of surface waters, leading to a descent of the O2-sulphide interface to the sea floor and to marked changes in the marine environment, ultimately contributing to the Cambrian radiation.

  18. Biogeochemical weathering under ice: Size matters

    NASA Astrophysics Data System (ADS)

    Wadham, J. L.; Tranter, M.; Skidmore, M.; Hodson, A. J.; Priscu, J.; Lyons, W. B.; Sharp, M.; Wynn, P.; Jackson, M.

    2010-09-01

    The basal regions of continental ice sheets are gaps in our current understanding of the Earth's biosphere and biogeochemical cycles. We draw on existing and new chemical data sets for subglacial meltwaters to provide the first comprehensive assessment of sub-ice sheet biogeochemical weathering. We show that size of the ice mass is a critical control on the balance of chemical weathering processes and that microbial activity is ubiquitous in driving dissolution. Carbonate dissolution fueled by sulfide oxidation and microbial CO2 dominate beneath small valley glaciers. Prolonged meltwater residence times and greater isolation characteristic of ice sheets lead to the development of anoxia and enhanced silicate dissolution due to calcite saturation. We show that sub-ice sheet environments are highly geochemically reactive and should be considered in regional and global solute budgets. For example, calculated solute fluxes from Antarctica (72-130 t yr-1) are the same order of magnitude as those from some of the world's largest rivers and rates of chemical weathering (10-17 t km-2 yr-1) are high for the annual specific discharge (2.3-4.1 × 10-3 m). Our model of chemical weathering dynamics provides important information on subglacial biodiversity and global biogeochemical cycles and may be used to design strategies for the first sampling of Antarctic Subglacial Lakes and other sub-ice sheet environments for the next decade.

  19. Association between seasonal affective disorder and subjective quality of the sleep/wake cycle in adolescents.

    PubMed

    Tonetti, Lorenzo; Fabbri, Marco; Erbacci, Alex; Martoni, Monica; Natale, Vincenzo

    2014-03-30

    The relationship between seasonal affective disorder (SAD) and subjective quality of sleep/wake cycle in adolescents was explored. The Seasonal Pattern Assessment Questionnaire for Children and Adolescents (SPAQ-CA) and Mini Sleep Questionnaire (MSQ) were administered to 345 adolescents living in the city of Cesena (Emilia-Romagna region, Italy) (299 females; age range: 14-18 years), to determine SAD and perceived quality of the sleep/wake cycle. The response rate was 92% for females and 90.2% for males. The MSQ includes two factors, sleep and wake, with lower scores corresponding to a lower quality of sleep and wake. The MSQ includes cut-off criteria to detect a good or bad sleep and wake quality. Adolescents with SAD (16 ± 5.7) scored significantly lower than those not affected on wake factor (19.5 ± 4.3), while no effect has been observed on sleep factor. SAD was the only one significant predictor of good/bad wake quality, while it did not reach significant level with reference to good/bad sleep quality. Present results are indications of a possible influence of SAD on wake quality and further studies are necessary to confirm them.

  20. Resveratrol inhibits Epstein Barr Virus lytic cycle in Burkitt's lymphoma cells by affecting multiple molecular targets.

    PubMed

    De Leo, Alessandra; Arena, Giuseppe; Lacanna, Egidio; Oliviero, Giorgio; Colavita, Francesca; Mattia, Elena

    2012-11-01

    Resveratrol (RV), a polyphenolic natural product present in many plants and fruits, exhibits anti-inflammatory, cardio-protective and anti-proliferative properties. Moreover, RV affects a wide variety of viruses including members of the Herpesviridae family, retroviruses, influenza A virus and polyomavirus by altering cellular pathways that affect viral replication itself. Epstein Barr Virus (EBV), the causative agent of infectious mononucleosis, is associated with different proliferative diseases in which it establishes a latent and/or a lytic infection. In this study, we examined the antiviral activity of RV against the EBV replicative cycle and investigated the molecular targets possibly involved. In a cellular context that allows in vitro EBV activation and lytic cycle progression through mechanisms closely resembling those that in vivo initiate and enable productive infection, we found that RV inhibited EBV lytic genes expression and the production of viral particles in a dose-dependent manner. We demonstrated that RV inhibited protein synthesis, decreased reactive oxygen species (ROS) levels, and suppressed the EBV-induced activation of the redox-sensitive transcription factors NF-kB and AP-1. Further insights into the signaling pathways and molecular targets modulated by RV may provide the basis for exploiting the antiviral activity of this natural product on EBV replication.

  1. Modeling coupled element cycles in coastal plain wetlands subject to saltwater intrusion - linking sulfur dynamics with carbon and nitrogen cycling

    NASA Astrophysics Data System (ADS)

    Helton, A. M.; Poole, G.; Bernhardt, E. S.; Payn, R.; Burgin, A. J.

    2011-12-01

    Interactions of sea-level rise and drought conditions drive salt water intrusion within historically freshwater coastal wetlands. As salt water intrusion increases, biogeochemical cycling will likely shift dramatically, but the rate and shape of the changes are uncertain. To explore the potential implications of increased sulfate from saltwater intrusion on wetland biogeochemical cycles, we incorporate sulfur cycling into an existing model of coupled oxygen, carbon and nitrogen cycling. The model operates based on fundamental principles of stoichiometry and thermodynamics: microbial assemblages use the suite of metabolic pathways that maximize microbial growth, given the available electron donors/acceptors and the stoichiometric ratio of carbon and nitrogen required for building biomass. Using solute concentrations from a coastal wetland experiencing salt water intrusion, we implement the model with and without sulfur cycling, and also compare model results to preliminary assays of wetland soils. Incorporating sulfur cycling introduces interactions between sulfur and nitrogen cycling (e.g., sulfide oxidation with nitrate) and a new suite of metabolic pathways (e.g., sulfate reduction and sulfide oxidation). After a salt water intrusion event, sulfur pathways play a more dominant role in wetland biogeochemistry and change the distribution and magnitude of existing biogeochemical pathways (e.g., denitrification, methanogenesis), which affects carbon and nitrogen cycling as well as trace gas emissions. This modeling approach will provide a tool for exploring hypotheses regarding complex wetland biogeochemical dynamics under changing climatic conditions.

  2. 4-Quinolone drugs affect cell cycle progression and function of human lymphocytes in vitro.

    PubMed Central

    Forsgren, A; Schlossman, S F; Tedder, T F

    1987-01-01

    Most antibacterial agents do not affect human lymphocyte function, but a few are inhibitory. In contrast, a pronounced increase in the incorporation of [3H]thymidine in the presence of 4-quinolones was observed in these studies. The uptake of [3H]thymidine into DNA (trichloroacetic acid precipitable) was significantly increased in phytohemagglutinin-stimulated human lymphocytes when they were exposed to eight new 4-quinolone derivatives, ciprofloxacin, norfloxacin, ofloxacin, A-56619, A-56620, amifloxacin, enoxacin, and pefloxacin, at 1.6 to 6.25 micrograms/ml for 5 days. Four less antibacterially active 4-quinolones (nalidixic acid, cinoxacin, flumequine, and pipemidic acid) stimulated [3H]thymidine incorporation only at higher concentrations or not at all. Kinetic studies showed that incorporation of [3H]thymidine was not affected or slightly inhibited by ciprofloxacin 2 days after phytohemagglutinin stimulation but was increased on days 3 to 6. The total incorporation of [3H]thymidine from day 1 to day 6 after phytohemagglutinin stimulation was increased by 42 to 45% at 5 to 20 micrograms of ciprofloxacin per ml. Increased [3H]thymidine incorporation was also seen when human lymphocytes were stimulated with mitogens other than phytohemagglutinin. Ciprofloxacin added at the start of the culture had a more pronounced effect on [3H]thymidine incorporation than when added later. In spite of the apparent increase in DNA synthesis, lymphocyte growth was inhibited by 20 micrograms of ciprofloxacin per ml, and cell cycle analysis showed that ciprofloxacin inhibited progression through the cell cycle. In addition, immunoglobulin secretion by human lymphocytes stimulated by pokeweed mitogen for Epstein-Barr virus was inhibited by approximately 50% at 5 micrograms of ciprofloxacin per ml. These results suggest that the 4-quinolone drugs may also affect eucaryotic cell function in vitro, but additional studies are needed to establish an in vivo relevance. PMID:3606076

  3. Coastal-zone biogeochemical dynamics under global warming

    SciTech Connect

    Mackenzie, F.T.; Ver, L.M.; Lerman, A.

    2000-03-01

    The coastal zone, consisting of the continental shelves to a depth of 200 meters, including bays, lagoons, estuaries, and near-shore banks, is an environment that is strongly affected by its biogeochemical and physical interactions with reservoirs in the adjacent domains of land, atmosphere, open ocean, and marine sediments. Because the coastal zone is smaller in volume and area coverage relative to the open ocean, it traditionally has been studied as an integral part of the global oceans. In this paper, the authors show by numerical modeling that it is important to consider the coastal zone as an entity separate from the open ocean in any assessment of future Earth-system response under human perturbation. Model analyses for the early part of the 21st century suggest that the coastal zone plays a significant modifying role in the biogeochemical dynamics of the carbon cycle and the nutrient cycles coupled to it. This role is manifested in changes in primary production, storage, and/or export of organic matter, its remineralization, and calcium carbonate precipitation--all of which determine the state of the coastal zone with respect to exchange of CO{sub 2} with the atmosphere. Under a scenario of future reduced or complete cessation of the thermohaline circulation (THC) of the global oceans, coastal waters become an important sink for atmospheric CO{sub 2}, as opposed to the conditions in the past and present, when coastal waters are believed to be a source of CO{sub 2} to the atmosphere. Profound changes in coastal-zone primary productivity underscore the important role of phosphorus as a limiting nutrient. In addition, calculations indicate that the saturation state of coastal waters with respect to carbonate minerals will decline by {approximately}15% by the year 2030. Any future slowdown in the THC of the oceans will increase slightly the rate of decline in saturation state.

  4. Biogeochemical drivers of phosphatase activity in salt marsh sediments

    NASA Astrophysics Data System (ADS)

    Freitas, Joana; Duarte, Bernardo; Caçador, Isabel

    2014-10-01

    Although nitrogen has become a major concern for wetlands scientists dealing with eutrophication problems, phosphorous represents another key element, and consequently its biogeochemical cycling has a crucial role in eutrophication processes. Microbial communities are a central component in trophic dynamics and biogeochemical processes on coastal systems, since most of the processes in sediments are microbial-mediated due to enzymatic action, including the mineralization of organic phosphorus carried out by acid phosphatase activity. In the present work, the authors investigate the biogeochemical sediment drivers that control phosphatase activities. Authors also aim to assess biogeochemical factors' influence on the enzyme-mediated phosphorous cycling processes in salt marshes. Plant rhizosediments and bare sediments were collected and biogeochemical features, including phosphatase activities, inorganic and organic phosphorus contents, humic acids content and pH, were assessed. Acid phosphatase was found to give the highest contribution for total phosphatase activity among the three pH-isoforms present in salt marsh sediments, favored by acid pH in colonized sediments. Humic acids also appear to have an important role inhibiting phosphatase activity. A clear relation of phosphatase activity and inorganic phosphorous was also found. The data presented reinforces the role of phosphatase in phosphorous cycling.

  5. A Gene, ALCA, Affecting the Life Cycle Form Expressed in PHYSARUM POLYCEPHALUM.

    PubMed

    Truitt, C L; Hoffman, C S; Holt, C E

    1982-05-01

    The usual sequence of forms in the Physarum polycephalum life cycle is plasmodium-spore-amoeba-plasmodium. So-called "amoebaless life cycle" or alc mutants of this Myxomycete undergo a simplified plasmodium-spore-plasmodium life cycle. We have analyzed three independently isolated alc mutants and found in each case that the failure of the spores to give rise to amoebae is due to a recessive Mendelian allele. The three mutations are tightly linked to one another and belong to a single complementation group, alcA. The mutations are pleiotropic, not only interfering with the establishment of the amoebal form at spore germination, but also affecting the phenotype of alc amoebae, which occasionally arise from alc spores. The alc amoebae (1) grow more slowly than wild type, particularly at elevated temperatures; (2) tend to transform directly into plasmodia, circumventing the sexual fusion of amoebae that usually accompanies plasmodium formation; and (3) form plasmodia by the sexual mechanism less efficiently than wild-type amoebae. The various effects of an alc mutation seem to derive from mutation of a single gene, since reversion for one effect is always accompanied by reversion for the other effects. Moreover, a mutation, aptA1, that blocks direct plasmodium formation by alcA amoebae, also increases their growth rate to near normal. The manner of plasmodium formation in alcA strains differs significantly from that in another class of mutants, the gad mutants. Unlike gad amoebae, alcA amoebae need not reach a critical density in order to differentiate directly into plasmodia and do not respond to the extracellular inducer of differentiation. In addition, alcA differentiation is not prevented by a mutation, npfA1, that blocks direct differentiation by most gad amoebae.

  6. Aquaporin-1 plays important role in proliferation by affecting cell cycle progression.

    PubMed

    Galán-Cobo, Ana; Ramírez-Lorca, Reposo; Toledo-Aral, Juan José; Echevarría, Miriam

    2016-01-01

    Aquaporin-1 (AQP1) has been associated with tumor development. Here, we investigated how AQP1 may affect cell proliferation. The proliferative rate of adult carotid body (CB) cells, known to proliferate under chronic hypoxia, was analyzed in wild-type (AQP1(+/+) ) and knock out (AQP1(-/-) ) mice, maintained in normoxia or exposed to hypoxia while BrdU was administered. Fewer numbers of total BrdU(+) and TH-BrdU(+) cells were observed in AQP1(-/-) mice, indicating a role for AQP1 in CB proliferation. Then, by flow cytometry, cell cycle state and proliferation of cells overexpressing AQP1 were compared to those of wild-type cells. In the AQP1-overexpressing cells, we observed higher cell proliferation and percentages of cells in phases S and G2/M and fewer apoptotic cells after nocodazole treatment were detected by annexin V staining. Also in these cells, proteomic assays showed higher expression of cyclin D1 and E1 and microarray analysis revealed changes in many cell proliferation-related molecules, including, Zeb 2, Jun, NF-kβ, Cxcl9, Cxcl10, TNF, and the TNF receptor. Overall, our results indicate that the presence of AQP1 modifies the expression of key cell cycle proteins apparently related to increases in cell proliferation. This contributes to explaining the presence of AQP1 in many different tumors.

  7. Diel biogeochemical processes in terrestrial waters

    USGS Publications Warehouse

    Compiled and Edited by Nimick, David A.; Gammons, Christopher H.

    2011-01-01

    Many biogeochemical processes in rivers and lakes respond to the solar photocycle and produce persistent patterns of measureable phenomena that exhibit a day-night, or 24-h, cycle. Despite a large body of recent literature, the mechanisms responsible for these diel fluctuations are widely debated, with a growing consensus that combinations of physical, chemical, and biological processes are involved. These processes include streamflow variation, photosynthesis and respiration, plant assimilation, and reactions involving photochemistry, adsorption and desorption, and mineral precipitation and dissolution. Diel changes in streamflow and water properties such as temperature, pH, and dissolved oxygen concentration have been widely recognized, and recently, diel studies have focused more widely by considering other constituents such as dissolved and particulate trace metals, metalloids, rare earth elements, mercury, organic matter, dissolved inorganic carbon (DIC), and nutrients. The details of many diel processes are being studied using stable isotopes, which also can exhibit diel cycles in response to microbial metabolism, photosynthesis and respiration, or changes in phase, speciation, or redox state. In addition, secondary effects that diel cycles might have, for example, on biota or in the hyporheic zone are beginning to be considered. This special issue is composed primarily of papers presented at the topical session "Diurnal Biogeochemical Processes in Rivers, Lakes, and Shallow Groundwater" held at the annual meeting of the Geological Society of America in October 2009 in Portland, Oregon. This session was organized because many of the growing number of diel studies have addressed just a small part of the full range of diel cycling phenomena found in rivers and lakes. This limited focus is understandable because (1) fundamental aspects of many diel processes are poorly understood and require detailed study, (2) the interests and expertise of individual

  8. Estimating the Effects of Mountain Pine Beetle Outbreaks on Biophysical and Biogeochemical Variables Using MODIS Products

    NASA Astrophysics Data System (ADS)

    Meddens, A. J.; Hicke, J. A.

    2009-12-01

    Insects such as mountain pine beetle (Dendroctonus ponderosae Hopkins) are major disturbances in forested ecosystems, affecting forest structure and function. In recent decades, mountain pine beetles have affected large forested areas in the United States and Canada. Insect disturbances impact biophysical variables important for atmosphere/ecosystem exchanges of mass, energy, and momentum as well as biogeochemical processes, notably carbon cycling. Our goal was to estimate the effects of insect disturbance, in particular mountain pine beetle infestations, on carbon cycling in Colorado by using MODIS biophysical and biogeochemical data products in conjunction with fine-resolution aerial imagery that identified the infestation locations. We classified a fine-resolution aerial image, acquired on August 13 2008 in Colorado, into five classes: (1) undisturbed forests, (2) red-attack (when needles are red and still on trees), (3) gray-attack (when trees have lost most of their needles), (4) herbaceous vegetation, and (5) non-vegetation. The classified aerial image was evaluated using field observations, and high accuracies were achieved. The classified aerial image was then aggregated to the MODIS resolution to investigate different levels of insect-caused tree mortality (i.e., the percentage of fine-resolution red-attack and gray-attack pixels in the aggregated pixels). MODIS-derived biophysical and biogeochemical products, including gross and net primary production, leaf area index (LAI), and surface albedo were overlaid on locations with the different levels of outbreak severity. Trajectories of these variables across time were extracted and pre- and post-outbreak values were compared. The outcomes of the effects of MPB on biophysical parameters can be used to increase understanding of impacts of insects to forest functioning and carbon cycling in the western United States.

  9. Biogeochemical processes underpin ecosystem services

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Elemental cycling is critical to the function of ecosystems and delivery of key ecosystem services because many of these elements are essential nutrients or detrimental toxicants that directly affect the health of organisms and ecosystems. A team of authors from North Carolina State University and ...

  10. Elevated Progesterone Levels on the Day of Oocyte Maturation May Affect Top Quality Embryo IVF Cycles

    PubMed Central

    Huang, Bo; Ren, Xinling; Wu, Li; Zhu, Lixia; Xu, Bei; Li, Yufeng; Ai, Jihui; Jin, Lei

    2016-01-01

    In contrast to the impact of elevated progesterone on endometrial receptivity, the data on whether increased progesterone levels affects the quality of embryos is still limited. This study retrospectively enrolled 4,236 fresh in vitro fertilization (IVF) cycles and sought to determine whether increased progesterone is associated with adverse outcomes with regard to top quality embryos (TQE). The results showed that the TQE rate significantly correlated with progesterone levels on the day of human chorionic gonadotropin (hCG) trigger (P = 0.009). Multivariate linear regression analysis of factors related to the TQE rate, in conventional IVF cycles, showed that the TQE rate was negatively associated with progesterone concentration on the day of hCG (OR was -1.658, 95% CI: -2.806 to -0.510, P = 0.005). When the serum progesterone level was within the interval 2.0–2.5 ng/ml, the TQE rate was significantly lower (P <0.05) than when the progesterone level was < 1.0 ng/ml; similar results were obtained for serum progesterone levels >2.5 ng/ml. Then, we choose a progesterone level at 1.5ng/ml, 2.0 ng/ml and 2.5 ng/ml as cut-off points to verify this result. We found that the TQE rate was significantly different (P <0.05) between serum progesterone levels < 2.0 ng/ml and >2.0 ng/ml. In conclusion, the results of this study clearly demonstrated a negative effect of elevated progesterone levels on the day of hCG trigger, on TQE rate, regardless of the basal FSH, the total gonadotropin, the age of the woman, or the time of ovarian stimulation. These data demonstrate that elevated progesterone levels (>2.0 ng/ml) before oocyte maturation were consistently detrimental to the oocyte. PMID:26745711

  11. Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells.

    PubMed

    Akhtar Ali, Muhammad; Younis, Shady; Wallerman, Ola; Gupta, Rajesh; Andersson, Leif; Sjöblom, Tobias

    2015-06-23

    The transcription factor ZBED6 (zinc finger, BED-type containing 6) is a repressor of IGF2 whose action impacts development, cell proliferation, and growth in placental mammals. In human colorectal cancers, IGF2 overexpression is mutually exclusive with somatic mutations in PI3K signaling components, providing genetic evidence for a role in the PI3K pathway. To understand the role of ZBED6 in tumorigenesis, we engineered and validated somatic cell ZBED6 knock-outs in the human colorectal cancer cell lines RKO and HCT116. Ablation of ZBED6 affected the cell cycle and led to increased growth rate in RKO cells but reduced growth in HCT116 cells. This striking difference was reflected in the transcriptome analyses, which revealed enrichment of cell-cycle-related processes among differentially expressed genes in both cell lines, but the direction of change often differed between the cell lines. ChIP sequencing analyses displayed enrichment of ZBED6 binding at genes up-regulated in ZBED6-knockout clones, consistent with the view that ZBED6 modulates gene expression primarily by repressing transcription. Ten differentially expressed genes were identified as putative direct gene targets, and their down-regulation by ZBED6 was validated experimentally. Eight of these genes were linked to the Wnt, Hippo, TGF-β, EGF receptor, or PI3K pathways, all involved in colorectal cancer development. The results of this study show that the effect of ZBED6 on tumor development depends on the genetic background and the transcriptional state of its target genes.

  12. A framework to assess biogeochemical response to ecosystem disturbance using nutrient partitioning ratios

    USGS Publications Warehouse

    Kranabetter, J. Marty; McLauchlan, Kendra K.; Enders, Sara K.; Fraterrigo, Jennifer M.; Higuera, Philip E.; Morris, Jesse L.; Rastetter, Edward B.; Barnes, Rebecca; Buma, Brian; Gavin, Daniel G.; Gerhart, Laci M.; Gillson, Lindsey; Hietz, Peter; Mack, Michelle C.; McNeil, Brenden; Perakis, Steven

    2016-01-01

    Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil and plant nutrient stocks in mature ecosystems represents a characteristic site property. Focusing on nitrogen (N), we hypothesize that this partitioning ratio (soil N: plant N) will undergo a predictable trajectory after disturbance. We investigate the nature of this partitioning ratio with three approaches: (1) nutrient stock data from forested ecosystems in North America, (2) a process-based ecosystem model, and (3) conceptual shifts in site nutrient availability with altered disturbance frequency. Partitioning ratios could be applied to a variety of ecosystems and successional states, allowing for improved temporal scaling of disturbance events. The generally short-term empirical evidence for recovery trajectories of nutrient stocks and partitioning ratios suggests two areas for future research. First, we need to recognize and quantify how disturbance effects can be accreting or depleting, depending on whether their net effect is to increase or decrease ecosystem nutrient stocks. Second, we need to test how altered disturbance frequencies from the present state may be constructive or destructive in their effects on biogeochemical cycling and nutrient availability. Long-term studies, with repeated sampling of soils and vegetation, will be essential in further developing this framework of biogeochemical response to disturbance.

  13. Biogeochemical modeling at mass extinction boundaries

    NASA Technical Reports Server (NTRS)

    Rampino, M. R.; Caldeira, K. G.

    1991-01-01

    The causes of major mass extinctions is a subject of considerable interest to those concerned with the history and evolution of life on earth. The primary objectives of the proposed plan of research are: (1) to develop quantitative time-dependent biogeochemical cycle models, coupled with an ocean atmosphere in order to improve the understanding of global scale physical, chemical, and biological processes that control the distribution of elements important for life at times of mass extinctions; and (2) to develop a comprehensive data base of the best available geochemical, isotopic, and other relevant geologic data from sections across mass extinction boundaries. These data will be used to constrain and test the biogeochemical model. These modeling experiments should prove useful in: (1) determining the possible cause(s) of the environmental changes seen at bio-event boundaries; (2) identifying and quantifying little-known feedbacks among the oceans, atmosphere, and biosphere; and (3) providing additional insights into the possible responses of the earth system to perturbations of various timescales. One of the best known mass extinction events marks the Cretaceous/Tertiary (K/T) boundary (66 Myr ago). Data from the K/T boundary are used here to constrain a newly developed time-dependent biogeochemical cycle model that is designed to study transient behavior of the earth system. Model results predict significant fluctuations in ocean alkalinity, atmospheric CO2, and global temperatures caused by extinction of calcareous plankton and reduction in the sedimentation rates of pelagic carbonates and organic carbon. Oxygen-isotome and other paleoclimatic data from K/T time provide some evidence that such climatic fluctuations may have occurred, but stabilizing feedbacks may have acted to reduce the ocean alkalinity and carbon dioxide fluctuations.

  14. The Southern Ocean biogeochemical divide

    NASA Astrophysics Data System (ADS)

    Marinov, I.; Gnanadesikan, A.; Toggweiler, J. R.; Sarmiento, J. L.

    2006-06-01

    Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO2 and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO2 because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO2 balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO2 and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

  15. The Southern Ocean biogeochemical divide.

    PubMed

    Marinov, I; Gnanadesikan, A; Toggweiler, J R; Sarmiento, J L

    2006-06-22

    Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO(2) and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO(2) because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO(2) balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO(2) and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

  16. Life-cycle exposure to the estrogenic mycotoxin zearalenone affects zebrafish (Danio rerio) development and reproduction.

    PubMed

    Schwartz, Patrick; Bucheli, Thomas D; Wettstein, Felix E; Burkhardt-Holm, Patricia

    2013-05-01

    Zearalenone (ZON) is one of the worldwide most common mycotoxin and exhibits estrogenic activity in the range of natural steroid estrogens. The occurrence of ZON has been reported in soil, drainage water, wastewater effluents, and rivers, but its ecotoxicological effects on fish have hardly been investigated. The consequences of continuous long-term ZON exposure, including a subsequent depuration period, as well as transgenerational effects of F0 short-term exposure on F1 generation were investigated. Effects on growth, reproduction activity, physiology, and morphology of zebrafish (Danio rerio) were examined in a 182 day live-cycle experiment. Life-long exposure to ZON for 140 days increased wet weight, body length, and condition factor of female fish at 1000 ng/L, and sex ratio was shifted toward female from 320 ng/L ZON. Only females at 1000 ng/L ZON revealed a 1.5-fold induction of plasma vitellogenin (VTG). Relative fecundity at 1000 ng/L recovered significantly during the depuration period. An increased condition factor in adult female F1 fish implies that exposure of F0 generation to 1000 ng/L ZON affected growth of F1 generation. A negative correlation between relative fecundity in the F1 generation (all groups exposed to 320 ng/L ZON) and the nominal ZON concentrations of the F0 exposure might indicate an influence of F0 exposure on reproductive performance of F1 generation. No exposure scenario affected fertility, hatch, embryo survival, and gonad morphology of zebrafish. Evaluating the environmental relevance of this data, the risk for fish to be harmed by exposure to ZON solely seems rather marginal, but ZON might contribute to the overall estrogenicity in the environment. © 2011 Wiley Periodicals, Inc. Environ Toxicol 2013.

  17. A Generic Biogeochemical Module for Earth System Models: Next Generation BioGeoChemical Module (NGBGC), Version 1.0

    SciTech Connect

    Fang, Yilin; Huang, Maoyi; Liu, Chongxuan; Li, Hongyi; Leung, Lai-Yung R.

    2013-11-13

    Physical and biogeochemical processes regulate soil carbon dynamics and CO2 flux to and from atmosphere, influencing global climate changes. Integration of these processes into earth system models (e.g., community land models (CLM)), however, currently faces three major challenges: 1) extensive efforts are required to modify modeling structures and to rewrite computer programs to incorporate new or updated processes as new knowledge is being generated, 2) computational cost is prohibitively expensive to simulate biogeochemical processes in land models due to large variations in the rates of biogeochemical processes, and 3) various mathematical representations of biogeochemical processes exist to incorporate different aspects of fundamental mechanisms, but systematic evaluation of the different mathematical representations is difficult, if not possible. To address these challenges, we propose a new computational framework to easily incorporate physical and biogeochemical processes into land models. The new framework consists of a new biogeochemical module with a generic algorithm and reaction database so that new and updated processes can be incorporated into land models without the need to manually set up the ordinary differential equations to be solved numerically. The reaction database consists of processes of nutrient flow through the terrestrial ecosystems in plants, litter and soil. This framework facilitates effective comparison studies of biogeochemical cycles in an ecosystem using different conceptual models under the same land modeling framework. The approach was first implemented in CLM and benchmarked against simulations from the original CLM-CN code. A case study was then provided to demonstrate the advantages of using the new approach to incorporate a phosphorus cycle into the CLM model. To our knowledge, the phosphorus-incorporated CLM is a new model that can be used to simulate phosphorus limitation on the productivity of terrestrial ecosystems.

  18. Antecedent acute cycling exercise affects attention control: an ERP study using attention network test.

    PubMed

    Chang, Yu-Kai; Pesce, Caterina; Chiang, Yi-Te; Kuo, Cheng-Yuh; Fong, Dong-Yang

    2015-01-01

    The purpose of this study was to investigate the after-effects of an acute bout of moderate intensity aerobic cycling exercise on neuroelectric and behavioral indices of efficiency of three attentional networks: alerting, orienting, and executive (conflict) control. Thirty young, highly fit amateur basketball players performed a multifunctional attentional reaction time task, the attention network test (ANT), with a two-group randomized experimental design after an acute bout of moderate intensity spinning wheel exercise or without antecedent exercise. The ANT combined warning signals prior to targets, spatial cueing of potential target locations and target stimuli surrounded by congruent or incongruent flankers, which were provided to assess three attentional networks. Event-related brain potentials and task performance were measured during the ANT. Exercise resulted in a larger P3 amplitude in the alerting and executive control subtasks across frontal, central and parietal midline sites that was paralleled by an enhanced reaction speed only on trials with incongruent flankers of the executive control network. The P3 latency and response accuracy were not affected by exercise. These findings suggest that after spinning, more resources are allocated to task-relevant stimuli in tasks that rely on the alerting and executive control networks. However, the improvement in performance was observed in only the executively challenging conflict condition, suggesting that whether the brain resources that are rendered available immediately after acute exercise translate into better attention performance depends on the cognitive task complexity.

  19. Factors affecting life cycle assessment of milk produced on 6 Mediterranean buffalo farms.

    PubMed

    Pirlo, G; Carè, S; Fantin, V; Falconi, F; Buttol, P; Terzano, G M; Masoni, P; Pacelli, C

    2014-10-01

    This study quantifies the environmental impact of milk production of Italian Mediterranean buffaloes and points out the farm characteristics that mainly affect their environmental performance. Life cycle assessment was applied in a sample of 6 farms. The functional unit was 1 kg of normalized buffalo milk (LBN), with a reference milk fat and protein content of 8.3 and 4.73%, respectively. The system boundaries included the agricultural phase of the buffalo milk chain from cradle to farm gate. An economic criterion was adopted to allocate the impacts on milk production. Impact categories investigated were global warming (GW), abiotic depletion (AD), photochemical ozone formation (PO), acidification (AC), and eutrophication (EU). The contribution to the total results of the following farm activities were investigated: (1) on-farm energy consumption, (2) manure management, (3) manure application, (4) on-farm feed production (comprising production and application of chemical fertilizers and pesticides), (5) purchased feed production, (6) enteric fermentation, and (7) transport of purchased feeds, chemical fertilizers, and pesticides from producers to farms. Global warming associated with 1 kg of LBN resulted in 5.07 kg of CO₂ Eq [coefficient of variation (CV)=21.9%], AD was 3.5 × 10(-3) kg of Sb Eq (CV=51.7%), PO was 6.8 × 10(-4) kg of C₂H₄ Eq (CV=28.8%), AC was 6.5 × 10(-2) kg of SO₂ Eq (CV=30.3%), and EU was 3.3 × 10(-2) kg of PO₄(3-) Eq (CV=36.5%). The contribution of enteric fermentation and manure application to GW is 37 and 20%, respectively; on-farm consumption, on-farm feed production, and purchased feed production are the main contributors to AD; about 70% of PO is due to enteric fermentation; manure management and manure application are responsible for 55 and 25% of AC and 25 and 55% of EU, respectively. Methane and N₂O are responsible for 44 and 43% of GW, respectively. Crude oil consumption is responsible for about 72% of AD; contribution of

  20. Factors affecting life cycle assessment of milk produced on 6 Mediterranean buffalo farms.

    PubMed

    Pirlo, G; Carè, S; Fantin, V; Falconi, F; Buttol, P; Terzano, G M; Masoni, P; Pacelli, C

    2014-10-01

    This study quantifies the environmental impact of milk production of Italian Mediterranean buffaloes and points out the farm characteristics that mainly affect their environmental performance. Life cycle assessment was applied in a sample of 6 farms. The functional unit was 1 kg of normalized buffalo milk (LBN), with a reference milk fat and protein content of 8.3 and 4.73%, respectively. The system boundaries included the agricultural phase of the buffalo milk chain from cradle to farm gate. An economic criterion was adopted to allocate the impacts on milk production. Impact categories investigated were global warming (GW), abiotic depletion (AD), photochemical ozone formation (PO), acidification (AC), and eutrophication (EU). The contribution to the total results of the following farm activities were investigated: (1) on-farm energy consumption, (2) manure management, (3) manure application, (4) on-farm feed production (comprising production and application of chemical fertilizers and pesticides), (5) purchased feed production, (6) enteric fermentation, and (7) transport of purchased feeds, chemical fertilizers, and pesticides from producers to farms. Global warming associated with 1 kg of LBN resulted in 5.07 kg of CO₂ Eq [coefficient of variation (CV)=21.9%], AD was 3.5 × 10(-3) kg of Sb Eq (CV=51.7%), PO was 6.8 × 10(-4) kg of C₂H₄ Eq (CV=28.8%), AC was 6.5 × 10(-2) kg of SO₂ Eq (CV=30.3%), and EU was 3.3 × 10(-2) kg of PO₄(3-) Eq (CV=36.5%). The contribution of enteric fermentation and manure application to GW is 37 and 20%, respectively; on-farm consumption, on-farm feed production, and purchased feed production are the main contributors to AD; about 70% of PO is due to enteric fermentation; manure management and manure application are responsible for 55 and 25% of AC and 25 and 55% of EU, respectively. Methane and N₂O are responsible for 44 and 43% of GW, respectively. Crude oil consumption is responsible for about 72% of AD; contribution of

  1. Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

    NASA Astrophysics Data System (ADS)

    2016-09-01

    Ocean microbes drive biogeochemical cycling on a global scale. However, this cycling is constrained by viruses that affect community composition, metabolic activity, and evolutionary trajectories. Owing to challenges with the sampling and cultivation of viruses, genome-level viral diversity remains poorly described and grossly understudied, with less than 1% of observed surface-ocean viruses known. Here we assemble complete genomes and large genomic fragments from both surface- and deep-ocean viruses sampled during the Tara Oceans and Malaspina research expeditions, and analyse the resulting ‘global ocean virome’ dataset to present a global map of abundant, double-stranded DNA viruses complete with genomic and ecological contexts. A total of 15,222 epipelagic and mesopelagic viral populations were identified, comprising 867 viral clusters (defined as approximately genus-level groups). This roughly triples the number of known ocean viral populations and doubles the number of candidate bacterial and archaeal virus genera, providing a near-complete sampling of epipelagic communities at both the population and viral-cluster level. We found that 38 of the 867 viral clusters were locally or globally abundant, together accounting for nearly half of the viral populations in any global ocean virome sample. While two-thirds of these clusters represent newly described viruses lacking any cultivated representative, most could be computationally linked to dominant, ecologically relevant microbial hosts. Moreover, we identified 243 viral-encoded auxiliary metabolic genes, of which only 95 were previously known. Deeper analyses of four of these auxiliary metabolic genes (dsrC, soxYZ, P-II (also known as glnB) and amoC) revealed that abundant viruses may directly manipulate sulfur and nitrogen cycling throughout the epipelagic ocean. This viral catalog and functional analyses provide a necessary foundation for the meaningful integration of viruses into ecosystem models where

  2. Biological soil crusts emit large amounts of NO and HONO affecting the nitrogen cycle in drylands

    NASA Astrophysics Data System (ADS)

    Tamm, Alexandra; Wu, Dianming; Ruckteschler, Nina; Rodríguez-Caballero, Emilio; Steinkamp, Jörg; Meusel, Hannah; Elbert, Wolfgang; Behrendt, Thomas; Sörgel, Matthias; Cheng, Yafang; Crutzen, Paul J.; Su, Hang; Pöschl, Ulrich; Weber, Bettina

    2016-04-01

    to the latest IPCC report. In summary, our measurements show that dryland emissions of nitrogen oxides are largely driven by biocrusts and not by the underlying soil. As precipitation patterns, which influence biocrust activity, are affected by climate change, alterations in global nitrogen oxide emissions are to be expected. Thus, the role of biocrusts in the global cycling of reactive nitrogen needs to be followed and also implemented in regional and global models of biogeochemistry, air chemistry and climate.

  3. How inhibiting nitrification affects nitrogen cycle and reduces environmental impacts of anthropogenic nitrogen input.

    PubMed

    Qiao, Chunlian; Liu, Lingli; Hu, Shuijin; Compton, Jana E; Greaver, Tara L; Li, Quanlin

    2015-03-01

    Anthropogenic activities, and in particular the use of synthetic nitrogen (N) fertilizer, have doubled global annual reactive N inputs in the past 50-100 years, causing deleterious effects on the environment through increased N leaching and nitrous oxide (N2 O) and ammonia (NH3 ) emissions. Leaching and gaseous losses of N are greatly controlled by the net rate of microbial nitrification. Extensive experiments have been conducted to develop ways to inhibit this process through use of nitrification inhibitors (NI) in combination with fertilizers. Yet, no study has comprehensively assessed how inhibiting nitrification affects both hydrologic and gaseous losses of N and plant nitrogen use efficiency. We synthesized the results of 62 NI field studies and evaluated how NI application altered N cycle and ecosystem services in N-enriched systems. Our results showed that inhibiting nitrification by NI application increased NH3 emission (mean: 20%, 95% confidential interval: 33-67%), but reduced dissolved inorganic N leaching (-48%, -56% to -38%), N2 O emission (-44%, -48% to -39%) and NO emission (-24%, -38% to -8%). This amounted to a net reduction of 16.5% in the total N release to the environment. Inhibiting nitrification also increased plant N recovery (58%, 34-93%) and productivity of grain (9%, 6-13%), straw (15%, 12-18%), vegetable (5%, 0-10%) and pasture hay (14%, 8-20%). The cost and benefit analysis showed that the economic benefit of reducing N's environmental impacts offsets the cost of NI application. Applying NI along with N fertilizer could bring additional revenues of $163 ha(-1)  yr(-1) for a maize farm, equivalent to 8.95% increase in revenues. Our findings showed that NIs could create a win-win scenario that reduces the negative impact of N leaching and greenhouse gas production, while increases the agricultural output. However, NI's potential negative impacts, such as increase in NH3 emission and the risk of NI contamination, should be fully

  4. How inhibiting nitrification affects nitrogen cycle and reduces environmental impacts of anthropogenic nitrogen input.

    PubMed

    Qiao, Chunlian; Liu, Lingli; Hu, Shuijin; Compton, Jana E; Greaver, Tara L; Li, Quanlin

    2015-03-01

    Anthropogenic activities, and in particular the use of synthetic nitrogen (N) fertilizer, have doubled global annual reactive N inputs in the past 50-100 years, causing deleterious effects on the environment through increased N leaching and nitrous oxide (N2 O) and ammonia (NH3 ) emissions. Leaching and gaseous losses of N are greatly controlled by the net rate of microbial nitrification. Extensive experiments have been conducted to develop ways to inhibit this process through use of nitrification inhibitors (NI) in combination with fertilizers. Yet, no study has comprehensively assessed how inhibiting nitrification affects both hydrologic and gaseous losses of N and plant nitrogen use efficiency. We synthesized the results of 62 NI field studies and evaluated how NI application altered N cycle and ecosystem services in N-enriched systems. Our results showed that inhibiting nitrification by NI application increased NH3 emission (mean: 20%, 95% confidential interval: 33-67%), but reduced dissolved inorganic N leaching (-48%, -56% to -38%), N2 O emission (-44%, -48% to -39%) and NO emission (-24%, -38% to -8%). This amounted to a net reduction of 16.5% in the total N release to the environment. Inhibiting nitrification also increased plant N recovery (58%, 34-93%) and productivity of grain (9%, 6-13%), straw (15%, 12-18%), vegetable (5%, 0-10%) and pasture hay (14%, 8-20%). The cost and benefit analysis showed that the economic benefit of reducing N's environmental impacts offsets the cost of NI application. Applying NI along with N fertilizer could bring additional revenues of $163 ha(-1)  yr(-1) for a maize farm, equivalent to 8.95% increase in revenues. Our findings showed that NIs could create a win-win scenario that reduces the negative impact of N leaching and greenhouse gas production, while increases the agricultural output. However, NI's potential negative impacts, such as increase in NH3 emission and the risk of NI contamination, should be fully

  5. Developmental associations between adolescent change in depressive symptoms and menstrual-cycle-phase-specific negative affect during early adulthood.

    PubMed

    Kiesner, Jeff; Poulin, François

    2012-10-01

    The causal factors associated with increases in depressive symptoms among adolescent girls remain an area of theoretical debate, and the limited research considering a hormonal influence has provided mixed results. The goal of the present study was to test a set of longitudinal associations, that, if found, would provide support for a hormonal contribution to these changes. Specifically, this study tested the hypotheses that changes in depressive symptoms among adolescent girls would be associated with phase-specific symptoms of the menstrual cycle during early adulthood; that these associations would differ across three phases of the menstrual cycle; and that the pattern of associations would differ for changes in depressive symptoms during early- and late-adolescence. The sample consisted of 47 women with longitudinal data from 12 to 21 years old (approximately 91% European Canadian, 4% Middle Eastern Canadian, 2% Haitian Canadian, and 2% Asian Canadian). Consistent with expectations, results showed that early-adolescent increases in depressive symptoms were negatively associated with menstrual-phase negative affect, and positively associated with mid-cycle negative affect, but not associated with premenstrual negative affect; whereas late-adolescent change in depressive symptoms was only associated with depressive symptoms at 20-21 years. Thus, early-adolescent changes in depressive symptoms are longitudinally associated with later mood change across the menstrual cycle, suggesting a common underlying cause, which is hypothesized to be hormonal. Moreover, results suggest that, with respect to variables that are involved in affective development, important differences exist between early- and late-adolescence. The discussion considers menstrual-cycle-related symptoms (e.g., dysmenorrhea) during adolescence, and the need to study their effects on development. It is suggested that focused intervention and prevention efforts may be indicated to interrupt negative

  6. A Coupled Land Surface-Subsurface Biogeochemical Model for Aqueous and Gaseous Nitrogen Losses

    NASA Astrophysics Data System (ADS)

    Gu, C.; Maggi, F.; Riley, W.; Pan, L.; Xu, T.; Oldenburg, C.; Miller, N.

    2008-12-01

    In recent years concern has grown over the contribution of nitrogen (N) fertilizers to nitrate (NOB3PB-P) water pollution and atmospheric pollution of nitrous oxide (NB2BO), nitric oxide (NO), and ammonia (NHB3B). Characterizing the amount and species of N losses is therefore essential in developing a strategy to estimate and mitigate N leaching and emission to the atmosphere. Indeed, transformations of nitrogen depend strongly on water content, soil temperature, and nitrogen concentration. Land surface processes therefore have to be taken into account to properly characterize N biogeochemical cycling. However, most current nitrogen biogeochemical models take the land surface as the upper boundary by lumping the complex processes above the surface as known boundary conditions. In this study, an extant subsurface mechanistic N cycle model (TOUGHREACT-N) was coupled with the community land model (CLM). The resulting coupled model extends the modeling capability of TOUGHREACT-N to include the important energy, momentum, and moisture dynamics provided by CLM. The coupled model showed a significant impact of land-surface diurnal forcing on soil temperature and moisture and on nitrogen fluxes. We also discuss field applications of the model and discuss how temporal dynamics of nitrogen fluxes are affected by land surface processes.

  7. Integrating turbulent flow, biogeochemical, and poromechanical processes in rippled coastal sediment (Invited)

    NASA Astrophysics Data System (ADS)

    Cardenas, M. B.; Cook, P. L.; Jiang, H.; Traykovski, P.

    2010-12-01

    Coastal sediments are the locus of multiple coupled processes. Turbulent flow associated with waves and currents induces porewater flow through sediment leading to fluid exchange with the water column. This porewater flow is determined by the hydraulic and elastic properties of the sediment. Porewater flow also ultimately controls biogeochemical reactions in the sediment whose rates depend on delivery of reactants and export of products. We present results from numerical modeling studies directed at integrating these processes with the goal of shedding light on these complex environments. We show how denitrification rates inside ripples are largest at intermediate permeability which represents the optimal balance of reactant delivery and anoxic conditions. It is clear that nutrient cycling and distribution within the sediment is strongly dependent on the character of the multidimensional flow field inside of sediment. More recent studies illustrate the importance of the elastic properties of the saturated sediment on modulating fluid exchange between the water column and the sediment when pressure fluctuations along the sediment-water interface occur at the millisecond scale. Pressure fluctuations occur at this temporal scale due to turbulence and associated shedding of vortices due to the ripple geometry. This suggests that biogeochemical cycling may also be affected by these high-frequency elastic effects. Future studies should be directed towards this and should take advantage of modeling tools such as those we present.

  8. Nutrient cycling in bedform induced hyporheic zones

    NASA Astrophysics Data System (ADS)

    Bardini, L.; Boano, F.; Cardenas, M. B.; Revelli, R.; Ridolfi, L.

    2012-05-01

    The hyporheic zone is an ecotone connecting the stream and groundwater ecosystem that plays a significant role for stream biogeochemistry. Water exchange across the stream-sediment interface and biogeochemical reactions in the streambed concur to affect subsurface solute concentrations and eventually nutrient cycling in the fluvial corridor. In this paper we investigate the interplay of hydrological and biogeochemical processes in a duned streambed and their effect on spatial distribution of solutes. We employ a numerical model to simulate the turbulent water flow and the pressure distribution over the dunes, and then to evaluate the flow field and the biogeochemical reactions in the hyporheic sediments. Sensitivity analyses are performed to analyze the influence of hydrological and chemical properties of the system on solute reaction rates. The results demonstrate the effect of stream velocity and sediment permeability on the chemical zonation. Changing sediment permeability as well as stream velocity directly affects the nutrient supply and the residence times in the streambed, thus controlling the reaction rates under the dune. Stream-water quality is also shown to influence the reactive behavior of the sediments. In particular, the availability of dissolved organic carbon determines whether the streambed acts as a net sink or source of nitrate. This study represents a step towards a better understanding of the complex interactions between hydrodynamical and biogeochemical processes in the hyporheic zone.

  9. American cranberry (Vaccinium macrocarpon) extract affects human prostate cancer cell growth via cell cycle arrest by modulating expression of cell cycle regulators.

    PubMed

    Déziel, Bob; MacPhee, James; Patel, Kunal; Catalli, Adriana; Kulka, Marianna; Neto, Catherine; Gottschall-Pass, Katherine; Hurta, Robert

    2012-05-01

    Prostate cancer is one of the most common cancers in the world, and its prevalence is expected to increase appreciably in the coming decades. As such, more research is necessary to understand the etiology, progression and possible preventative measures to delay or to stop the development of this disease. Recently, there has been interest in examining the effects of whole extracts from commonly harvested crops on the behaviour and progression of cancer. Here, we describe the effects of whole cranberry extract (WCE) on the behaviour of DU145 human prostate cancer cells in vitro. Following treatment of DU145 human prostate cancer cells with 10, 25 and 50 μg ml⁻¹ of WCE, respectively for 6 h, WCE significantly decreased the cellular viability of DU145 cells. WCE also decreased the proportion of cells in the G2-M phase of the cell cycle and increased the proportion of cells in the G1 phase of the cell cycle following treatment of cells with 25 and 50 μg ml⁻¹ treatment of WCE for 6 h. These alterations in cell cycle were associated with changes in cell cycle regulatory proteins and other cell cycle associated proteins. WCE decreased the expression of CDK4, cyclin A, cyclin B1, cyclin D1 and cyclin E, and increased the expression of p27. Changes in p16(INK4a) and pRBp107 protein expression levels also were evident, however, the changes noted in p16(INK4a) and pRBp107 protein expression levels were not statistically significant. These findings demonstrate that phytochemical extracts from the American cranberry (Vaccinium macrocarpon) can affect the behaviour of human prostate cancer cells in vitro and further support the potential health benefits associated with cranberries.

  10. The repeated drying-wetting and freezing-thawing cycles affect only the active pool of soil organic matter

    NASA Astrophysics Data System (ADS)

    Semenov, Vyacheslav; Zinyakova, Natalya; Tulina, Anastasiya

    2016-04-01

    The decrease in the content of soil organic carbon, particularly in active form, is one of the major problems of the 21st century, which is closely related to the disturbance of the biogeochemical carbon cycle and to the increase in the emission of carbon dioxide into the atmosphere. The main reasons for the SOM losses are the surplus of the SOM active pool losses due to mineralization, erosion, and infiltration over the input of fresh organic matter to the soil, as well as the changes in the soil conditions and processes due to natural and anthropogenic disturbing impacts. Experiments were carried out with mixed samples from the upper layers of soddy-podzolic soil, gray forest soil, and typical chernozems. Soil samples as controls were incubated after wetting for 150 days. The dynamics and cumulative production of C-CO2 under stable temperature (22°C) and moisture conditions were determined; the initial content of potentially mineralizable organic matter (C0) in the soil at the beginning of the incubation was then calculated to use these data as the control. Other soil samples were exposed in flasks to the following successive treatments: wetting →incubation → freezing → thawing → incubation →drying. Six repeated cycles of disturbing impacts were performed for 140 days of the experiment. After six cycles, the soil samples were incubated under stable temperature and moisture conditions for 150 days. The wetting of dried soils and the thawing of frozen soils are accompanied by the pulsed dynamics of the C-CO2 production with an abrupt increase in the rate of the C-CO2 emission within several days by 2.7-12.4 and 1.6-2.7 times, respectively, compared to the stable incubation conditions. The rate of the C-CO2 production pulses under each subsequent impact decreased compared to the preceding one similarly for all studied soils, which could be due to the depletion in potentially mineralizable soil organic matter (C0). The cumulative extra C-CO2 production by

  11. The NEON Aquatic Network: Expanding the Availability of Biogeochemical Data

    NASA Astrophysics Data System (ADS)

    Vance, J. M.; Bohall, C.; Fitzgerald, M.; Utz, R.; Parker, S. M.; Roehm, C. L.; Goodman, K. J.; McLaughlin, B.

    2013-12-01

    Aquatic ecosystems are facing unprecedented pressure from climate change and land-use practices. Invasive species, whether plant, animal, insect or microbe present additional threat to aquatic ecosystem services. There are significant scientific challenges to understanding how these forces will interact to affect aquatic ecosystems, as the flow of energy and materials in the environment is driven by multivariate and non-linear biogeochemical cycles. The National Ecological Observatory Network (NEON) will collect and provide observational data across multiple scales. Sites were selected to maximize representation of major North American ecosystems using a multivariate geographic clustering method that partitioned the continental US, AK, HI, and Puerto Rico into 20 eco-climatic domains. The NEON data collection systems and methods are designed to yield standardized, near real-time data subjected to rigorous quality controls prior to public dissemination through an online data portal. NEON will collect data for 30 years to facilitate spatial-temporal analysis of environmental responses and drivers of ecosystem change, ranging from local through continental scales. Here we present the NEON Aquatic Network, a multi-parameter network consisting of a combination of in situ sensor and observational data. This network will provide data to examine biogeochemical, biological, hydrologic and geomorphic metrics at 36 sites, which are a combination of small 1st/2nd order wadeable streams, large rivers and lakes. A typical NEON Aquatic site will host up to two in-stream sensor sets designed to collect near-continuous water quality data (e.g. pH/ORP, temperature, conductivity, dissolved oxygen, CDOM) along with up to 8 shallow groundwater monitoring wells (level, temp., cond.), and a local meteorological station (e.g. 2D wind speed, PAR, barometric pressure, temperature, net radiation). These coupled sensor suites will be complemented by observational data (e.g. water

  12. How Business Cycles Affect the Healthcare Sector: A Cross-country Investigation.

    PubMed

    Cleeren, Kathleen; Lamey, Lien; Meyer, Jan-Hinrich; De Ruyter, Ko

    2016-07-01

    The long-term relationship between the general economy and healthcare expenditures has been extensively researched, to explain differences in healthcare spending between countries, but the midterm (i.e., business cycle) perspective has been overlooked. This study explores business cycle sensitivity in both public and private parts of the healthcare sector across 32 countries. Responses to the business cycle vary notably, both across spending sources and across countries. Whereas in some countries, consumers and/or governments cut back, in others, private and/or public healthcare buyers tend to spend more. We also assess long-term consequences of business cycle sensitivity and show that public cost cutting during economic downturns deflates the mortality rates, whereas private cut backs increase the long-term growth in total healthcare expenditures. Finally, multiple factors help explain variability in cyclical sensitivity. Private cost cuts during economic downturns are smaller in countries with a predominantly publicly funded healthcare system and more preventive public activities. Public cut backs during contractions are smaller in countries that rely more on tax-based resources rather than social health insurances. Copyright © 2015 John Wiley & Sons, Ltd.

  13. The Impact of Continuous and Interval Cycle Exercise on Affect and Enjoyment

    ERIC Educational Resources Information Center

    Kilpatrick, Marcus W.; Greeley, Samuel J.; Collins, Larry H.

    2015-01-01

    Rates of physical activity remain low despite public health efforts. One form of physical activity that provides significant physiological benefit but has not been evaluated in terms of affective and enjoyment responses is interval exercise. Purpose: The purpose of this study was to compare affect and enjoyment assessed before, during, and after…

  14. Does prior 1500-m swimming affect cycling energy expenditure in well-trained triathletes?

    PubMed

    Delextrat, Anne; Brisswalter, Jeanick; Hausswirth, Christophe; Bernard, Thierry; Vallier, Jean-Marc

    2005-08-01

    The purpose of this study was to determine the effects of a 1,500-m swim on energy expenditure during a subsequent cycle task. Eight well-trained male triathletes (age 26.0 +/- 5.0 yrs; height 179.6 +/- 4.5 cm; mass 71.3 +/- 5.8 kg; VO(2)max 71.9 +/- 7.8 ml.kg(-1).min(-1)) underwent two testing sessions in counterbalanced order. The sessions consisted of a 30-min ride on the cycle ergometer at 75% of maximal aerobic power (MAP), and at a pedaling frequency of 95 rev.min(-1), preceded either by a 1,500-m swim at 1.20 m.s(-1) (SC trial) or by a cycling warm-up at 30% of MAP (C trial). Respiratory and metabolic data were collected between the 3rd and the 5th min, and between the 28th and 30th min of cycling. The main results indicated a significantly lower gross efficiency (13.0%) and significantly higher blood lactate concentration (56.4%), VO(2) (5.0%), HR (9.3%), VE (15.7%), and RF (19.9%) in the SC compared to the C trial after 5 min, p < 0.05. After 30 min, only VE (7.9%) and blood lactate concentration (43.9%) were significantly higher in the SC compared to the C trial, p < 0.05. These results confirm the increase in energy cost previously observed during sprint-distance triathlons and point to the importance of the relative intensity of swimming on energy demand during subsequent cycling. PMID:16258179

  15. Biogeochemical Processes in Microbial Ecosystems

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.

    2001-01-01

    The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life, and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and, potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial populations and their metabolic properties. Additional information is contained in the original extended abstract.

  16. Oleoylethanolamide affects food intake and sleep-waking cycle through a hypothalamic modulation.

    PubMed

    Soria-Gómez, E; Guzmán, K; Pech-Rueda, O; Montes-Rodríguez, C J; Cisneros, M; Prospéro-García, O

    2010-05-01

    Oleoylethanolamide (OEA) is an endogenous molecule related to endocannabinoids (eCBs) that induces satiety. It binds to the peroxisome-proliferator-activated receptor alpha (PPAR alpha). PPAR alpha is involved in feeding regulation and it has been proposed to play a role in sleep modulation. The objective of the present work is to show if this molecule modifies the sleep-waking cycle through central mechanisms. We have found that the peripheral administration of OEA reduces food intake and increases waking with a concomitant reduction of rapid eye movement sleep. Additionally, this treatment produces deactivation of the lateral hypothalamus, as inferred from the c-Fos expression evaluation. Finally, intra-lateral hypothalamus injection of OEA has mirrored the effects induced by this molecule when it is peripherally administered. In conclusion, we show for the very first time that OEA can modify the sleep-waking cycle and food intake, apparently mediated by the lateral hypothalamus.

  17. Large nuclear vacuoles in spermatozoa negatively affect pregnancy rate in IVF cycles

    PubMed Central

    Ghazali, Shahin; Talebi, Ali Reza; Khalili, Mohammad Ali; Aflatoonian, Abbas; Esfandiari, Navid

    2015-01-01

    Background: Recently, motile sperm organelle morphology examination (MSOME) criteria as a new real time tool for evaluation of spermatozoa in intracytoplasmic sperm injection (ICSI) cycles has been considered. Objective: The aim was to investigate the predictive value of MSOME in in vitro fertilization (IVF) in comparison to ICSI cycles and evaluation of the association between MSOME parameters and traditional sperm parameters in both groups. Materials and Methods: This is a cross sectional prospective analysis of MSOME parameters in IVF (n=31) and ICSI cycles (n=35). MSOME parameters were also evaluated as the presence of vacuole (none, small, medium, large or mix); head size (normal, small or large); cytoplasmic droplet; head shape and acrosome normality. In sub-analysis, MSOME parameters were compared between two groups with successful or failed clinical pregnancy in each group. Results: In IVF group, the rate of large nuclear vacuole showed significant increase in failed as compared to successful pregnancies (13.81±9.7vs7.38±4.4, respectively, p=0.045) while MSOME parameters were the same between successful and failed pregnancies in ICSI group. Moreover, a negative correlation was noticed between LNV and sperm shape normalcy. In ICSI group, a negative correlation was established between cytoplasmic droplet and sperm shape normalcy. In addition, there was a positive correlation between sperm shape normalcy and non-vacuolated spermatozoa. Conclusion: The high rate of large nuclear vacuoles in sperm used in IVF cycles with failed pregnancies confirms that MSOME, is a helpful tool for fine sperm morphology assessment, and its application may enhance the assisted reproduction technology success rates. PMID:26494990

  18. Factors affecting the optimization of the Stirling cycle for use as a heat pump

    SciTech Connect

    Scaringe, R.P.

    1983-11-01

    This report discusses the effects of variations of the phase-angle, cylinder volumes, dead space, cylinder heat transfer, working fluid, and temperature on capacity and performance of a Stirling cycle heat pump through the use of a relatively simple computer model. Shortcomings in predicting the coefficient of performance for heating (COP /SUB H/ ) via ideal analysis are identified. A comparison of the simulated COP /SUB H/ with experimental data is presented for one particular nonoptimum machine.

  19. Is the Stratospheric QBO affected by Solar Wind Dynamic Pressure via an Annual Cycle Modulation?

    NASA Astrophysics Data System (ADS)

    Lu, H.; Jarvis, M. J.

    2010-12-01

    This study explores possible solar wind dynamic pressure effects on equatorial temperature and wind with an emphasis on the stratospheric Quasi-biennial Oscillation (QBO). The QBO phase occurrence and transition are closely linked to an annual cycle of tropical lower stratospheric temperature. The statistical response of the tropical temperature to solar wind dynamic pressure is characterized by ~1.25 K warming near the tropopause during the Boreal winter and spring and ~ 0.5 K cooling in the troposphere during the Austral winter and spring. The combined effect of this is a reduction of the amplitude of the annual cycle in temperature in the tropical tropopause region. The weakening of the annual cycle causes systematic and significant change in the tropical upwelling and therefore the strength and phase distribution of the QBO in the lower stratosphere. In the lower stratosphere, significantly stronger and more frequency easterly anomalies are found to be associated with high solar wind dynamic pressure during August to October. In addition to the seasonal response, there is a small but seasonally invariant response that is characterized by a vertical three-cell anomaly pattern with westerly anomalies in the troposphere and at 3-10 hPa and easterly anomalies in the lower stratosphere. We propose that significantly stronger easterly anomalies in the tropical lower stratosphere under high solar wind dynamic pressure during the Austral winter and spring are a consequence both of the initializing effect of this three-cell structure and of an amplification effect due to the seasonal modulation of the annual cycle.

  20. How inhibiting nitrification affects nitrogen cycle and reduces environmental impacts of anthropogenic nitrogen input

    EPA Science Inventory

    We conducted a meta-analysis of 103 nitrification inhibitor (NI) studies, and evaluated how NI application affects crop productivity and other ecosystem services in agricultural systems. Our results showed that, compared to conventional fertilizer practice, applications of NI alo...

  1. Biochar affects soil organic matter cycling and microbial functions but does not alter microbial community structure in a paddy soil.

    PubMed

    Tian, Jing; Wang, Jingyuan; Dippold, Michaela; Gao, Yang; Blagodatskaya, Evgenia; Kuzyakov, Yakov

    2016-06-15

    The application of biochar (BC) in conjunction with mineral fertilizers is one of the most promising management practices recommended to improve soil quality. However, the interactive mechanisms of BC and mineral fertilizer addition affecting microbial communities and functions associated with soil organic matter (SOM) cycling are poorly understood. We investigated the SOM in physical and chemical fractions, microbial community structure (using phospholipid fatty acid analysis, PLFA) and functions (by analyzing enzymes involved in C and N cycling and Biolog) in a 6-year field experiment with BC and NPK amendment. BC application increased total soil C and particulate organic C for 47.4-50.4% and 63.7-74.6%, respectively. The effects of BC on the microbial community and C-cycling enzymes were dependent on fertilization. Addition of BC alone did not change the microbial community compared with the control, but altered the microbial community structure in conjunction with NPK fertilization. SOM fractions accounted for 55% of the variance in the PLFA-related microbial community structure. The particulate organic N explained the largest variation in the microbial community structure. Microbial metabolic activity strongly increased after BC addition, particularly the utilization of amino acids and amines due to an increase in the activity of proteolytic (l-leucine aminopeptidase) enzymes. These results indicate that microorganisms start to mine N from the SOM to compensate for high C:N ratios after BC application, which consequently accelerate cycling of stable N. Concluding, BC in combination with NPK fertilizer application strongly affected microbial community composition and functions, which consequently influenced SOM cycling. PMID:26974565

  2. Biochar affects soil organic matter cycling and microbial functions but does not alter microbial community structure in a paddy soil.

    PubMed

    Tian, Jing; Wang, Jingyuan; Dippold, Michaela; Gao, Yang; Blagodatskaya, Evgenia; Kuzyakov, Yakov

    2016-06-15

    The application of biochar (BC) in conjunction with mineral fertilizers is one of the most promising management practices recommended to improve soil quality. However, the interactive mechanisms of BC and mineral fertilizer addition affecting microbial communities and functions associated with soil organic matter (SOM) cycling are poorly understood. We investigated the SOM in physical and chemical fractions, microbial community structure (using phospholipid fatty acid analysis, PLFA) and functions (by analyzing enzymes involved in C and N cycling and Biolog) in a 6-year field experiment with BC and NPK amendment. BC application increased total soil C and particulate organic C for 47.4-50.4% and 63.7-74.6%, respectively. The effects of BC on the microbial community and C-cycling enzymes were dependent on fertilization. Addition of BC alone did not change the microbial community compared with the control, but altered the microbial community structure in conjunction with NPK fertilization. SOM fractions accounted for 55% of the variance in the PLFA-related microbial community structure. The particulate organic N explained the largest variation in the microbial community structure. Microbial metabolic activity strongly increased after BC addition, particularly the utilization of amino acids and amines due to an increase in the activity of proteolytic (l-leucine aminopeptidase) enzymes. These results indicate that microorganisms start to mine N from the SOM to compensate for high C:N ratios after BC application, which consequently accelerate cycling of stable N. Concluding, BC in combination with NPK fertilizer application strongly affected microbial community composition and functions, which consequently influenced SOM cycling.

  3. The relationship between sleep-wake cycle and cognitive functioning in young people with affective disorders.

    PubMed

    Carpenter, Joanne S; Robillard, Rébecca; Lee, Rico S C; Hermens, Daniel F; Naismith, Sharon L; White, Django; Whitwell, Bradley; Scott, Elizabeth M; Hickie, Ian B

    2015-01-01

    Although early-stage affective disorders are associated with both cognitive dysfunction and sleep-wake disruptions, relationships between these factors have not been specifically examined in young adults. Sleep and circadian rhythm disturbances in those with affective disorders are considerably heterogeneous, and may not relate to cognitive dysfunction in a simple linear fashion. This study aimed to characterise profiles of sleep and circadian disturbance in young people with affective disorders and examine associations between these profiles and cognitive performance. Actigraphy monitoring was completed in 152 young people (16-30 years; 66% female) with primary diagnoses of affective disorders, and 69 healthy controls (18-30 years; 57% female). Patients also underwent detailed neuropsychological assessment. Actigraphy data were processed to estimate both sleep and circadian parameters. Overall neuropsychological performance in patients was poor on tasks relating to mental flexibility and visual memory. Two hierarchical cluster analyses identified three distinct patient groups based on sleep variables and three based on circadian variables. Sleep clusters included a 'long sleep' cluster, a 'disrupted sleep' cluster, and a 'delayed and disrupted sleep' cluster. Circadian clusters included a 'strong circadian' cluster, a 'weak circadian' cluster, and a 'delayed circadian' cluster. Medication use differed between clusters. The 'long sleep' cluster displayed significantly worse visual memory performance compared to the 'disrupted sleep' cluster. No other cognitive functions differed between clusters. These results highlight the heterogeneity of sleep and circadian profiles in young people with affective disorders, and provide preliminary evidence in support of a relationship between sleep and visual memory, which may be mediated by use of antipsychotic medication. These findings have implications for the personalisation of treatments and improvement of functioning in

  4. The relationship between sleep-wake cycle and cognitive functioning in young people with affective disorders.

    PubMed

    Carpenter, Joanne S; Robillard, Rébecca; Lee, Rico S C; Hermens, Daniel F; Naismith, Sharon L; White, Django; Whitwell, Bradley; Scott, Elizabeth M; Hickie, Ian B

    2015-01-01

    Although early-stage affective disorders are associated with both cognitive dysfunction and sleep-wake disruptions, relationships between these factors have not been specifically examined in young adults. Sleep and circadian rhythm disturbances in those with affective disorders are considerably heterogeneous, and may not relate to cognitive dysfunction in a simple linear fashion. This study aimed to characterise profiles of sleep and circadian disturbance in young people with affective disorders and examine associations between these profiles and cognitive performance. Actigraphy monitoring was completed in 152 young people (16-30 years; 66% female) with primary diagnoses of affective disorders, and 69 healthy controls (18-30 years; 57% female). Patients also underwent detailed neuropsychological assessment. Actigraphy data were processed to estimate both sleep and circadian parameters. Overall neuropsychological performance in patients was poor on tasks relating to mental flexibility and visual memory. Two hierarchical cluster analyses identified three distinct patient groups based on sleep variables and three based on circadian variables. Sleep clusters included a 'long sleep' cluster, a 'disrupted sleep' cluster, and a 'delayed and disrupted sleep' cluster. Circadian clusters included a 'strong circadian' cluster, a 'weak circadian' cluster, and a 'delayed circadian' cluster. Medication use differed between clusters. The 'long sleep' cluster displayed significantly worse visual memory performance compared to the 'disrupted sleep' cluster. No other cognitive functions differed between clusters. These results highlight the heterogeneity of sleep and circadian profiles in young people with affective disorders, and provide preliminary evidence in support of a relationship between sleep and visual memory, which may be mediated by use of antipsychotic medication. These findings have implications for the personalisation of treatments and improvement of functioning in

  5. Temperature cycling periods affect growth and tuberization in potatoes under continuous irradiation

    NASA Technical Reports Server (NTRS)

    Cao, W.; Tibbitts, T. W.

    1992-01-01

    Plants of the potato (Solanum tuberosum L.) cultivars Denali, Norland, Haig and Kennebec were grown for 42 days under three temperature cycling periods (thermoperiods) with continuous irradiation in two repeated experiments to help determine if temperature cycling might be varied to optimize tuber development of potatoes in controlled environments. Thermoperiods of 6/6 hours, 12/12 hours and 24/24 hours were established with the same temperature change of 22/14C and same controlled vapor pressure deficit of 0.60 kPa. The thermoperiod of 24/24 hours significantly promoted tuber initiation but slowed tuber enlargement in all four cultivars, compared to the thermoperiods of 6/6 hours and 12/12 hours. Denali' produced the highest tuber and total dry weights under the 6/6 hours thermoperiod. Kennebec' produced the highest tuber dry weight under the 12/12 hours thermoperiod. Thermoperiods had no significant effect on shoot and root dry weights of any cultivars. The major effect of thermoperiods was on initiation and enlargement of tubers.

  6. Understanding the Cycle of Military Deployment: How It Affects Young Children and Families

    ERIC Educational Resources Information Center

    Robertson, Rachel

    2008-01-01

    The statistics of children and families experiencing military life and affected by deployment are astounding. Many children who have an uncle, aunt, brother, or other family member serving in the military live near a military duty station, but others live far from other military families. Caregivers and teachers of young children share a common…

  7. Deregulated expression of Cdc6 in the skin facilitates papilloma formation and affects the hair growth cycle.

    PubMed

    Búa, Sabela; Sotiropoulou, Peggy; Sgarlata, Cecilia; Borlado, Luis R; Eguren, Manuel; Domínguez, Orlando; Ortega, Sagrario; Malumbres, Marcos; Blanpain, Cedric; Méndez, Juan

    2015-01-01

    Cdc6 encodes a key protein for DNA replication, responsible for the recruitment of the MCM helicase to replication origins during the G1 phase of the cell division cycle. The oncogenic potential of deregulated Cdc6 expression has been inferred from cellular studies, but no mouse models have been described to study its effects in mammalian tissues. Here we report the generation of K5-Cdc6, a transgenic mouse strain in which Cdc6 expression is deregulated in tissues with stratified epithelia. Higher levels of CDC6 protein enhanced the loading of MCM complexes to DNA in epidermal keratinocytes, without affecting their proliferation rate or inducing DNA damage. While Cdc6 overexpression did not promote skin tumors, it facilitated the formation of papillomas in cooperation with mutagenic agents such as DMBA. In addition, the elevated levels of CDC6 protein in the skin extended the resting stage of the hair growth cycle, leading to better fur preservation in older mice.

  8. Modeling phase transformation behavior during thermal cycling in the heat-affected zone of stainless steel welds

    SciTech Connect

    Vitek, J.M.; Iskander, Y.S.; David, S.A.

    1995-12-31

    An implicit finite-difference analysis was used to model the diffusion-controlled transformation behavior in a ternary system. The present analysis extends earlier work by examining the transformation behavior under the influence of multiple thermal cycles. The analysis was applied to the Fe-Cr-Ni ternary system to simulate the microstructural development in austenitic stainless steel welds. The ferrite-to-austenite transformation was studied in an effort to model the response of the heat-affected zone to multiple thermal cycles experienced during multipass welding. Results show that under some conditions, a transformation ``inertia`` exists that delays the system`s response when changing from cooling to heating. Conditions under which this ``inertia`` is most influential were examined. It was also found that under some conditions, the transformation behavior does not follow the equilibrium behavior as a function of temperature. Results also provide some insight into effect of composition distribution on transformation behavior.

  9. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    PubMed Central

    Ho, Adrian; Angel, Roey; Veraart, Annelies J.; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L. E.

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.

  10. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    PubMed Central

    Ho, Adrian; Angel, Roey; Veraart, Annelies J.; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L. E.

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. PMID:27602021

  11. A coupled biogeochemical-Dynamic Energy Budget model as a tool for managing fish production ponds.

    PubMed

    Serpa, Dalila; Pousão-Ferreira, Pedro; Caetano, Miguel; Cancela da Fonseca, Luís; Dinis, Maria Teresa; Duarte, Pedro

    2013-10-01

    The sustainability of semi-intensive aquaculture relies on management practices that simultaneously improve production efficiency and minimize the environmental impacts of this activity. The purpose of the present work was to develop a mathematical model that reproduced the dynamics of a semi-intensive fish earth pond, to simulate different management scenarios for optimizing fish production. The modeling approach consisted of coupling a biogeochemical model that simulated the dynamics of the elements that are more likely to affect fish production and cause undesirable environmental impacts (nitrogen, phosphorus and oxygen) to a fish growth model based on the Dynamic Energy Budget approach. The biogeochemical sub-model successfully simulated most water column and sediment variables. A good model fit was also found between predicted and observed white seabream (Diplodus sargus) growth data over a production cycle. In order to optimize fish production, different management scenarios were analysed with the model (e.g. increase stocking densities, decrease/increase water exchange rates, decrease/increase feeding rates, decrease phosphorus content in fish feeds, increase food assimilation efficiency and decrease pellets sinking velocity) to test their effects on the pond environment as well as on fish yields and effluent nutrient discharges. Scenarios were quantitatively evaluated and compared using the Analytical Hierarchical Process (AHP) methodology. The best management options that allow the maximization of fish production while maintaining a good pond environment and minimum impacts on the adjacent coastal system were to double standard stocking densities and to improve food assimilation efficiency.

  12. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

    PubMed

    Ho, Adrian; Angel, Roey; Veraart, Annelies J; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L E

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. PMID:27602021

  13. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

    PubMed

    Ho, Adrian; Angel, Roey; Veraart, Annelies J; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L E

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.

  14. Investigating the initial stages of soil formation in glacier forefields using the new biogeochemical model: SHIMMER

    NASA Astrophysics Data System (ADS)

    Bradley, James; Anesio, Alexandre; Arndt, Sandra; Sabacka, Marie; Barker, Gary; Benning, Liane; Blacker, Joshua; Singarayer, Joy; Tranter, Martyn; Yallop, Marian

    2016-04-01

    Glaciers and ice sheets in Polar and alpine regions are retreating in response to recent climate warming, exposing terrestrial ecosystems that have been locked under the ice for thousands of years. Exposed soils exhibit successional characteristics that can be characterised using a chronosequence approach. Decades of empirical research in glacier forefields has shown that soils are quickly colonised by microbes which drive biogeochemical cycling of elements and affect soil properties including nutrient concentrations, carbon fluxes and soil stability (Bradley et al, 2014). The characterisation of these soils is important for our understanding of the cycling of organic matter under extreme environmental and nutrient limiting conditions, and their potential contribution to global biogeochemical cycles. This is particularly important as these new areas will become more geographically expansive with continued ice retreat. SHIMMER (Soil biogeocHemIcal Model of Microbial Ecosystem Response) (Bradley et al, 2015) is a new mathematical model that simulates biogeochemical and microbial dynamics in glacier forefields. The model captures, explores and predicts the growth of different microbial groups (classified by function), and the associated cycling of carbon, nitrogen and phosphorus along a chronosequence. SHIMMER improves typical soil model formulations by including explicit representation of microbial dynamics, and those processes which are shown to be important for glacier forefields. For example, we categorise microbial groups by function to represent the diversity of soil microbial communities, and include the different metabolic needs and physiological pathways of microbial organisms commonly found in glacier forefields (e.g. microbes derived from underneath the glacier, typical soil bacteria, and microbes that can fix atmospheric nitrogen and assimilate soil nitrogen). Here, we present data from a study where we integrated modelling using SHIMMER with empirical

  15. Caffeine Affects Time to Exhaustion and Substrate Oxidation during Cycling at Maximal Lactate Steady State.

    PubMed

    Cruz, Rogério Santos de Oliveira; de Aguiar, Rafael Alves; Turnes, Tiago; Guglielmo, Luiz Guilherme Antonacci; Beneke, Ralph; Caputo, Fabrizio

    2015-06-30

    This study analyzed the effects of caffeine intake on whole-body substrate metabolism and exercise tolerance during cycling by using a more individualized intensity for merging the subjects into homogeneous metabolic responses (the workload associated with the maximal lactate steady state-MLSS). MLSS was firstly determined in eight active males (25 ± 4 years, 176 ± 7 cm, 77 ± 11 kg) using from two to four constant-load tests of 30 min. On two following occasions, participants performed a test until exhaustion at the MLSS workload 1 h after taking either 6 mg/kg of body mass of caffeine or placebo (dextrose), in a randomized, double-blinded manner. Respiratory exchange ratio was calculated from gas exchange measurements. There was an improvement of 22.7% in time to exhaustion at MLSS workload following caffeine ingestion (95% confidence limits of ±10.3%, p = 0.002), which was accompanied by decrease in respiratory exchange ratio (p = 0.001). These results reinforce findings indicating that sparing of the endogenous carbohydrate stores could be one of the several physiological effects of caffeine during submaximal performance around 1 h.

  16. Methane and nitrous oxide emissions affect the life-cycle analysis of algal biofuels

    NASA Astrophysics Data System (ADS)

    Frank, Edward D.; Han, Jeongwoo; Palou-Rivera, Ignasi; Elgowainy, Amgad; Wang, Michael Q.

    2012-03-01

    Researchers around the world are developing sustainable plant-based liquid transportation fuels (biofuels) to reduce petroleum consumption and greenhouse gas emissions. Algae are attractive because they promise large yields per acre compared to grasses, grains and trees, and because they produce oils that might be converted to diesel and gasoline equivalents. It takes considerable energy to produce algal biofuels with current technology; thus, the potential benefits of algal biofuels compared to petroleum fuels must be quantified. To this end, we identified key parameters for algal biofuel production using GREET, a tool for the life-cycle analysis of energy use and emissions in transportation systems. The baseline scenario produced 55 400 g CO2 equivalent per million BTU of biodiesel compared to 101 000 g for low-sulfur petroleum diesel. The analysis considered the potential for greenhouse gas emissions from anaerobic digestion processes commonly used in algal biofuel models. The work also studied alternative scenarios, e.g., catalytic hydrothermal gasification, that may reduce these emissions. The analysis of the nitrogen recovery step from lipid-extracted algae (residues) highlighted the importance of considering the fate of the unrecovered nitrogen fraction, especially that which produces N2O, a potent greenhouse gas with global warming potential 298 times that of CO2.

  17. Glucosylceramide synthesis inhibition affects cell cycle progression, membrane trafficking, and stage differentiation in Giardia lamblia.

    PubMed

    Stefanić, Sasa; Spycher, Cornelia; Morf, Laura; Fabriàs, Gemma; Casas, Josefina; Schraner, Elisabeth; Wild, Peter; Hehl, Adrian B; Sonda, Sabrina

    2010-09-01

    Synthesis of glucosylceramide via glucosylceramide synthase (GCS) is a crucial event in higher eukaryotes, both for the production of complex glycosphingolipids and for regulating cellular levels of ceramide, a potent antiproliferative second messenger. In this study, we explored the dependence of the early branching eukaryote Giardia lamblia on GCS activity. Biochemical analyses revealed that the parasite has a GCS located in endoplasmic reticulum (ER) membranes that is active in proliferating and encysting trophozoites. Pharmacological inhibition of GCS induced aberrant cell division, characterized by arrest of cytokinesis, incomplete cleavage furrow formation, and consequent block of replication. Importantly, we showed that increased ceramide levels were responsible for the cytokinesis arrest. In addition, GCS inhibition resulted in prominent ultrastructural abnormalities, including accumulation of cytosolic vesicles, enlarged lysosomes, and clathrin disorganization. Moreover, anterograde trafficking of the encystations-specific protein CWP1 was severely compromised and resulted in inhibition of stage differentiation. Our results reveal novel aspects of lipid metabolism in G. lamblia and specifically highlight the vital role of GCS in regulating cell cycle progression, membrane trafficking events, and stage differentiation in this parasite. In addition, we identified ceramide as a potent bioactive molecule, underscoring the universal conservation of ceramide signaling in eukaryotes. PMID:20335568

  18. A new Gsdma3 mutation affecting anagen phase of first hair cycle

    SciTech Connect

    Tanaka, Shigekazu; Tamura, Masaru; Aoki, Aya; Fujii, Tomoaki; Komiyama, Hiromitsu; Sagai, Tomoko; Shiroishi, Toshihiko . E-mail: tshirois@lab.nig.ac.jp

    2007-08-10

    Recombination-induced mutation 3 (Rim3) is a spontaneous mouse mutation that exhibits dominant phenotype of hyperkeratosis and hair loss. Fine linkage analysis of Rim3 and sequencing revealed a novel single point mutation, G1124A leading to Ala348Thr, in Gsdma3 in chromosome 11. Transgenesis with BAC DNA harboring the Rim3-type Gsdma3 recaptured the Rim3 phenotype, providing direct evidence that Gsdma3 is the causative gene of Rim3. We examined the spatial expression of Gsdma3 and characterized the Rim3 phenotype in detail. Gsdma3 is expressed in differentiated epidermal cells in the skin, but not in the proliferating epidermal cells. Histological analysis of Rim3 mutant showed hyperplasia of the epidermal cells in the upper hair follicles and abnormal anagen phase at the first hair cycle. Furthermore, immunohistochemical analysis revealed hyperproliferation and misdifferentiation of the upper follicular epidermis in Rim3 mutant. These results suggest that Gsdma3 is involved in the proliferation and differentiation of epidermal stem cells.

  19. Caffeine Affects Time to Exhaustion and Substrate Oxidation during Cycling at Maximal Lactate Steady State.

    PubMed

    Cruz, Rogério Santos de Oliveira; de Aguiar, Rafael Alves; Turnes, Tiago; Guglielmo, Luiz Guilherme Antonacci; Beneke, Ralph; Caputo, Fabrizio

    2015-07-01

    This study analyzed the effects of caffeine intake on whole-body substrate metabolism and exercise tolerance during cycling by using a more individualized intensity for merging the subjects into homogeneous metabolic responses (the workload associated with the maximal lactate steady state-MLSS). MLSS was firstly determined in eight active males (25 ± 4 years, 176 ± 7 cm, 77 ± 11 kg) using from two to four constant-load tests of 30 min. On two following occasions, participants performed a test until exhaustion at the MLSS workload 1 h after taking either 6 mg/kg of body mass of caffeine or placebo (dextrose), in a randomized, double-blinded manner. Respiratory exchange ratio was calculated from gas exchange measurements. There was an improvement of 22.7% in time to exhaustion at MLSS workload following caffeine ingestion (95% confidence limits of ±10.3%, p = 0.002), which was accompanied by decrease in respiratory exchange ratio (p = 0.001). These results reinforce findings indicating that sparing of the endogenous carbohydrate stores could be one of the several physiological effects of caffeine during submaximal performance around 1 h. PMID:26133971

  20. Aging affects spatial distribution of leg muscle oxygen saturation during ramp cycling exercise.

    PubMed

    Takagi, Shun; Kime, Ryotaro; Murase, Norio; Watanabe, Tsubasa; Osada, Takuya; Niwayama, Masatsugu; Katsumura, Toshihito

    2013-01-01

    We compared muscle oxygen saturation (SmO2) responses in several leg muscles and within a single muscle during ramp cycling exercise between elderly men (n = 8; age, 65 ± 3 years; ELD) and young men (n = 10; age, 23 ± 3 years; YNG). SmO2 was monitored at the distal site of the vastus lateralis (VLd), proximal site of the vastus lateralis (VLp), rectus femoris (RF), vastus medialis (VM), biceps femoris (BF), gastrocnemius lateralis (GL), gastrocnemius medialis (GM), and tibialis anterior (TA) by near-infrared spatial resolved spectroscopy. During submaximal exercise, significantly lower SmO2 at a given absolute work rate was observed in VLd, RF, BF, GL, and TA but not in VLp, VM, and GM in ELD than in YNG. In contrast, at all measurement sites, SmO2 at peak exercise was not significantly different between groups. These results indicate that the effects of aging on SmO2 responses are heterogeneous between leg muscles and also within a single muscle. The lower SmO2 in older men may have been caused by reduced muscle blood flow or altered blood flow distribution.

  1. Biodegradation of hydrocarbons and biogeochemical sulfur cycling in the salt dome environment: Inferences from sulfur isotope and organic geochemical investigations of the Bahloul Formation at the Bou Grine Zn/Pb ore deposit, Tunisia

    NASA Astrophysics Data System (ADS)

    Bechtel, A.; Shieh, Y.-N.; Pervaz, M.; Püttmann, W.

    1996-08-01

    Combined organic geochemical and stable isotope (S) analyses of samples from the Cretaceous Bahloul Formation (Tunisia) provide insight to oil accumulation processes, biogeochemical alteration of hydrocarbons, microbial sulfate reduction, and mineral deposition at the flanks of the Triassic Jebel Lorbeus diapir, forming the Bou Grine Zn/Pb deposit. The sulfur isotopic composition of the metal sulfides correlates with the degree of biodegradation of hydrocarbons, with the base-metal content and with the proportion of aromatics in the organic extracts. The δ 34S-values are interpreted to reflect bacterial sulfate reduction in a more or less closed system rather than a thermogenic contribution. The extent of H 2S production by the activity of the sulfate-reducing bacteria probably was limited by the availability of sulfate, which in turn was governed by the permeability of the respective sedimentary sequence and by the distance to the anhydrite cap rock. Evidence is provided that biodegradation of hydrocarbons and microbial sulfate reduction contribute to the formation of the high-grade mineralization inside the Bahloul Formation at the contact with the salt dome cap rock. The metals probably were derived through leaching of deeper sedimentary sequences by hot hypersaline basinal brines, evolved by dissolution of salt at the flanks of the diapirs. These hot metalliferous brines are proposed to migrate up around the diapir, finally mixing with near-surface, sulfate-rich brines in the roof zone. When the fluids came in contact with the organic-rich sediments of the Bahloul Formation, the dissolved sulfate was reduced by the sulfate-reducing bacteria. Hydrocarbons generated or accumulated in the Bahloul Formation were utilized by sulfate reducers. The occurrence of high amounts of native sulfur in high-grade ore samples suggest that the production rate of H 2S by bacterial sulfate reduction exceeded its consumption by metal-sulfide precipitation. The supply of dissolved

  2. Estradiol levels during the menstrual cycle differentially affect latencies to right and left hemispheres during dichotic listening: an ERP study.

    PubMed

    Tillman, Gail D

    2010-02-01

    Many behavioral studies have found high-estrogen phases of the menstrual cycle to be associated with enhanced left-hemisphere processing and low-estrogen phases to be associated with better right-hemisphere processing. This study examined the changing of hemispheric asymmetry during the menstrual cycle by analyzing event-related potential (ERP) data from midline and both hemispheres of 23 women during their performance of a dichotic tasks shown to elicit a left-hemisphere response (semantic categorization) and a right-hemisphere response (complex tones). Each woman was tested during her high-estrogen follicular phase and low-estrogen menstrual phase. Salivary assays of estradiol and progesterone were used to confirm cycle phase. Analyses of the ERP data revealed that latency for each hemisphere was differentially affected by phase and target side, such that latencies to the left hemisphere and from the right ear were shorter during the high-estrogen phase, and latencies to the right hemisphere and from the left ear were shorter during the low-estrogen phase. These findings supply electrophysiological correlates of the cyclically based interhemispheric differences evinced by behavioral studies.

  3. Climate Shifts and Plant-Community Transformations Affect Nitrogen Cycling in Semi-Arid Rangelands

    NASA Astrophysics Data System (ADS)

    Huber, D. P.; Hardenbrook, S.; Lohse, K. A.; Germino, M. J.; Reinhardt, K.

    2011-12-01

    Semi-arid rangelands are being impacted by climate shifts and plant-community transformations. However, little is known about how these ecosystems will respond to long-term changes in amount and seasonality of precipitation, or how shifts in vegetation modulate the response of plant-soil processes. Semi-arid rangelands are typically characterized by resource islands (perennial shrubs) and contrasting "interplant" (IP) spaces or patch types which may increase the complexity of ecosystem response to climate change. We used an established long-term ecohydrologic experiment (Est. 1993) located in southeastern Idaho to evaluate ecosystem response to changing precipitation seasonality and magnitude. The experiment consists of 3 replicated blocks of 2 vegetation types (a diverse sagebrush steppe assemblage or monoculture of exotic crested wheatgrass, CWG) and 3 irrigation treatments. We hypothesized that increased precipitation will enhance storage of soil organic matter (SOM) due to greater detrital inputs. Rates of nitrogen (N) mineralization and decomposition were also expected to increase relative to ambient treatments. Additionally, we expected that change from native sagebrush to CWG would reduce N availability due to differences in detrital C:N ratios and biomass partitioning. Preliminary results show increased precipitation enhanced carbon pools in native vegetation plots, with SOM in ambient, fall/spring, and summer precipitation treatments of 2.27, 2.73, and 2.71% respectively, and average plot cover of 29, 48, and 40% respectively. Under shrubs, available N increased with increased precipitation (3.5, 4.6, and 5.6 μg-N g-1 soil) although N-cycling rates remained constant. Conversely, IP patches experienced a steady increase in both net N mineralization and nitrification between ambient, fall/spring, and summer precipitation treatments. The IP patches experienced lower absolute values but similar trends in SOM and available N. Crested wheatgrass plots showed

  4. Terpenoids inhibit Candida albicans growth by affecting membrane integrity and arrest of cell cycle.

    PubMed

    Zore, Gajanan B; Thakre, Archana D; Jadhav, Sitaram; Karuppayil, S Mohan

    2011-10-15

    Anti-Candida potential of six terpenoids were evaluated in this study against various isolates of Candida albicans (n=39) and non-C. albicans (n=9) that are differentially susceptible to fluconazole. All the six terpenoids tested, showed excellent activity and were equally effective against isolates of Candida sps., tested in this study. Linalool and citral were the most effective ones, inhibiting all the isolates at ≤0.064% (v/v). Five among the six terpenoids tested were fungicidal. Time dependent kill curve assay showed that MFCs of linalool and eugenol were highly toxic to C. albicans, killing 99.9% inoculum within seven min of exposure, while that of citronellal, linalyl acetate and citral required 15min, 1h and 2h, respectively. FIC index values (Linalool - 0.140, benzyl benzoate - 0.156, eugenol - 0.265, citral - 0.281 and 0.312 for linalyl acetate and citronellal) and isobologram obtained by checker board assay showed that all the six terpenoids tested exhibit excellent synergistic activity with fluconazole against a fluconazole resistant strain of C. albicans. Terpenoids tested arrested C. albicans cells at different phases of the cell cycle i.e. linalool and LA at G1, citral and citronellal at S phase and benzyl benzoate at G2-M phase and induced apoptosis. Linalool, citral, citronellal and benzyl benzoate caused more than 50% inhibition of germ tube induction at 0.008%, while eugenol and LA required 0.032 and 0.016% (v/v) concentrations, respectively. MICs of all the terpenoids for the C. albicans growth were non toxic to HeLa cells. Terpenoids tested exhibited excellent activity against C. albicans yeast and hyphal form growth at the concentrations that are non toxic to HeLa cells. Terpenoids tested in this study may find use in antifungal chemotherapy, not only as antifungal agents but also as synergistic agents along with conventional drugs like fluconazole.

  5. Richness, biomass, and nutrient content of a wetland macrophyte community affect soil nitrogen cycling in a diversity-ecosystem functioning experiment

    USGS Publications Warehouse

    Korol, Alicia R.; Ahn, Changwoo; Noe, Gregory

    2016-01-01

    The development of soil nitrogen (N) cycling in created wetlands promotes the maturation of multiple biogeochemical cycles necessary for ecosystem functioning. This development proceeds from gradual changes in soil physicochemical properties and influential characteristics of the plant community, such as competitive behavior, phenology, productivity, and nutrient composition. In the context of a 2-year diversity experiment in freshwater mesocosms (0, 1, 2, 3, or 4 richness levels), we assessed the direct and indirect impacts of three plant community characteristics – species richness, total biomass, and tissue N concentration – on three processes in the soil N cycle – soil net ammonification, net nitrification, and denitrification potentials. Species richness had a positive effect on net ammonification potential (NAP) through higher redox potentials and likely faster microbial respiration. All NAP rates were negative, however, due to immobilization and high rates of ammonium removal. Net nitrification was inhibited at higher species richness without mediation from the measured soil properties. Higher species richness also inhibited denitrification potential through increased redox potential and decreased nitrification. Both lower biomass and/or higher tissue ratios of carbon to nitrogen, characteristics indicative of the two annual plants, were shown to have stimulatory effects on all three soil N processes. The two mediating physicochemical links between the young macrophyte community and microbial N processes were soil redox potential and temperature. Our results suggest that early-successional annual plant communities play an important role in the development of ecosystem N multifunctionality in newly created wetland soils.

  6. Glutamate availability is important in intramuscular amino acid metabolism and TCA cycle intermediates but does not affect peak oxidative metabolism.

    PubMed

    Mourtzakis, M; Graham, T E; González-Alonso, J; Saltin, B

    2008-08-01

    Muscle glutamate is central to reactions producing 2-oxoglutarate, a tricarboxylic acid (TCA) cycle intermediate that essentially expands the TCA cycle intermediate pool during exercise. Paradoxically, muscle glutamate drops approximately 40-80% with the onset of exercise and 2-oxoglutarate declines in early exercise. To investigate the physiological relationship between glutamate, oxidative metabolism, and TCA cycle intermediates (i.e., fumarate, malate, 2-oxoglutarate), healthy subjects trained (T) the quadriceps of one thigh on the single-legged knee extensor ergometer (1 h/day at 70% maximum workload for 5 days/wk), while their contralateral quadriceps remained untrained (UT). After 5 wk of training, peak oxygen consumption (VO2peak) in the T thigh was greater than that in the UT thigh (P<0.05); VO2peak was not different between the T and UT thighs with glutamate infusion. Peak exercise under control conditions revealed a greater glutamate uptake in the T thigh compared with rest (7.3+/-3.7 vs. 1.0+/-0.1 micromol.min(-1).kg wet wt(-1), P<0.05) without increase in TCA cycle intermediates. In the UT thigh, peak exercise (vs. rest) induced an increase in fumarate (0.33+/-0.07 vs. 0.02+/-0.01 mmol/kg dry wt (dw), P<0.05) and malate (2.2+/-0.4 vs. 0.5+/-0.03 mmol/kg dw, P<0.05) and a decrease in 2-oxoglutarate (12.2+/-1.6 vs. 32.4+/-6.8 micromol/kg dw, P<0.05). Overall, glutamate infusion increased arterial glutamate (P<0.05) and maintained this increase. Glutamate infusion coincided with elevated fumarate and malate (P<0.05) and decreased 2-oxoglutarate (P<0.05) at peak exercise relative to rest in the T thigh; there were no further changes in the UT thigh. Although glutamate may have a role in the expansion of the TCA cycle, glutamate and TCA cycle intermediates do not directly affect VO2peak in either trained or untrained muscle.

  7. How Subduction Settings can Affect Planetary Nitrogen Cycle: An Experimental Insight

    NASA Astrophysics Data System (ADS)

    Cedeno, D. G.; Conceicao, R. V.; Wilbert de Souza, M. R.; Carniel, L. C.; Schmitz Quinteiro, R. V.

    2015-12-01

    Nitrogen is one of the main building blocks of life on Earth and its elemental cycle is deeply connected with organic matter and the biological system. It is known that nitrogen can be stored in mantellic phases (such as clinopyroxenes) or in metallic alloys under high pressures, meaning that Earth's mantle, and even the core, could be efficient nitrogen reservoirs. Probably, nitrogen is present in these deep Earth systems since the formation of our planet. Nevertheless, it is possible that superficial nitrogen can be reintroduced in the mantle through tectonic processes along Earth history. This is reinforced by d15N values in inclusions in diamonds and other deep mantle phases. We believe that subduction zones are efficient enough to transport nitrogen from surface to mantle. Clay minerals with high charge exchange capacity (CEC) are good candidates to convey nitrogen in subduction zones, especially when we take into account the similarities between K+ and NH4+. To simulate the high-pressure high-temperature conditions found in subduction zones, we performed a series of experiments with montmorillonite clay mineral undergone to high pressure and high temperature produced by a hydraulic press coupled with toroidal chambers, in pressures ranging from 2.5 to 7.7 GPa and temperatures up to 700oC. We used ex situ XRD analysis to accompany the main montmorillonite structural changes and FTIR analysis to determine quantitatively the presence of nitrogen. So far, our results show that the main structural transition in montmorillonite happens at ~350oC at room pressure and ~450oC at 2.5 and 4.0 GPa and consists in the transformation of an open clay structure to a closed mica structure (tobelite). FTIR data show the presence of nitrogen in all the analysed experiments. With the data obtained, we can presume that clay minerals carried in subduction zones can successfully transport nitrogen and other volatiles to the mantle. However, only cold subduction systems have the

  8. Annual cycle of humic substances in a temperate estuarine system affected by agricultural practices

    NASA Astrophysics Data System (ADS)

    Waeles, Matthieu; Riso, Ricardo; Pernet-Coudrier, Benoît; Quentel, François; Durrieu, Gaël; Tissot, Cyril

    2013-04-01

    Although widely studied for their chemical structures and properties (e.g., metal complexation, growth stimulation of planktonic species), humic substances (HS) have been very poorly quantified in fluvial and estuarine waters. In this monthly basis study, we determined HS concentrations (by Adsorptive Square Wave Cathodic Stripping Voltammetry) along the entire river-seawater gradient of the Penzé estuary (NW France), with the aim to characterize the export of these compounds. In this watershed where agricultural activities are predominant, manuring activities were identified as being the main source of dissolved organic carbon (DOC) and HS. HS concentrations varied usually within a narrow range in fluvial waters, i.e., 1.8 ± 0.4 mgC L-1 (150 ± 40 μM), but increased significantly as the first flood of autumn occurred (>4 mgC L-1 in river and upper estuary). At this time, HS accounted for a very high proportion of DOC (>80%). As evidenced by the increasing contribution of HS to DOC, and by the increasing contribution of small colloidal HS species; this autumnal flood increase should be attributed to a greater retention and transformation of organic matter on soils over the hotter, drier, and lighter period preceding the first autumnal flood. In the mixing zone, HS displayed mostly conservative behaviour, although some removals were occasionally observed. Overall, our study suggests that preservation of HS could be relatively important during their transfer across macrotidal temperate estuaries, at least in systems affected by agricultural practices.

  9. CD82 expression alters with human endometrial cycles and affects the uterine endometrial receptivity in vitro.

    PubMed

    Wei, Xiaowei; Liu, Shuai; Wang, Xiaoqi; Yan, Qiu

    2012-03-01

    Embryo implantation is a process that requires both temporal and spatial synchronization of the uterine endometrium and the embryo, and the endometrium becomes receptive to the embryo during the window of implantation. Although the expression patterns of many implantation-related molecules change dynamically during this process, the impact of CD82 on endometrial receptivity has not been elucidated. By immunohistochemical staining, we found that CD82 levels rose from the proliferative phase to the secretory phase in human endometrium. Specifically, the highest level appeared in mid- and late-secretory phases. Consistently, RL95-2 cells, representative of high-receptive endometrial epithelium, expressed higher levels of CD82 than did HEC-1A cells, which are representative of low-receptive endometrial epithelium, as detected by reverse transcription-polymerase chain reaction, Western blot and immunofluorescence. Furthermore, progesterone up-regulated the expression of CD82 in both epithelial cell lines. Down-regulation of CD82 in RL95-2 cells by either CD82 siRNA transfection or treatment with a CD82 antibody significantly decreased the adhesion of human embryonic JAR cells to RL95-2 cell monolayers (P < 0.01) and inhibited the phosphorylation of focal adhesion kinase (FAK). In contrast, up-regulation of CD82 in HEC-1A cells by CD82 cDNA transfection promoted embryonic JAR cell adhesion to HEC-1A monolayers (P < 0.05) and activated the phosphorylation of FAK. In conclusion, the expression of CD82 increases in endometrial tissues during the window of embryo implantation, CD82 expression affects endometrial receptivity of the uterine epithelial cells in vitro, and the FAK signaling pathway may be involved in this phenomenon. The correlation between CD82 and endometrial receptivity suggests that CD82 may serve as a potential marker of endometrial function. PMID:22393164

  10. Hydrological Perturbations Drive Biogeochemical Processes in Experimental Soil Columns from the Norman Landfill Site

    NASA Astrophysics Data System (ADS)

    Arora, B.; Mohanty, B. P.; McGuire, J. T.

    2010-12-01

    result of reduced hydraulic conductivity of loam and clay in these columns. Although the coupled HP1 model was able to effectively capture redox dynamics in the experimental soil columns, findings suggest the need to incorporate: i) reduction in hydraulic conductivity due to the formation of iron sulfide precipitates, and ii) transport of aqueous iron sulfide clusters observed in all columns except homogeneous sand in such contaminant fate and transport models. Results indicate that textural differences across the layered, lensed, and macropore columns were directly responsible for redox gradient across these interfaces. Also, quantitative relationships observed between pH and total carbon, pe and redox couples, etc. are most significantly affected by wetting and drying cycles of the soil moisture regime for the different soil columns.

  11. Biogeochemical and Hydrological Heterogeneity and Emergent Archetypical Catchment Response Patterns

    NASA Astrophysics Data System (ADS)

    Jawitz, J. W.; Gall, H. E.; Rao, P. S.

    2014-12-01

    What can stream hydrologic and biogeochemical signals tell us about interactions among spatially heterogeneous hydrological and biogeochemical processes at the catchment-scale? We seek to understand how the spatial structure of solute sources coupled with both stationary and nonstationary hydroclimatic drivers affect observed archetypes of concentration-discharge (C-Q) patterns. These response patterns are the spatially integrated expressions of the spatiotemporal structure of solutes exported from managed catchments, and can provide insight into likely ecological consequences of receiving water bodies (e.g., wetlands, rivers, lakes, and coastal waters). We investigated the following broad questions: (1) How does the spatial correlation between the structure of flow-generating areas and biogeochemical source areas across a catchment evolve under stochastic hydro-climatic forcing? (2) What are the feasible hydrologic and biogeochemical responses that lead to the emergence of archetypical C-Q patterns? and; (3) What implications do these coupled dynamics have for catchment monitoring and implementation of management practices? We categorize the observed temporal signals into three archetypical C-Q patterns: dilution; accretion, and constant concentration. We applied a parsimonious stochastic model of heterogeneous catchments, which act as hydrologic and biogeochemical filters, to examine the relationship between spatial heterogeneity and temporal history of solute export signals. The core concept of the modeling framework is considering the type and degree of spatial correlation between solute source zones and flow generating zones, and activation of different portions of the catchments during rainfall events. Our overarching hypothesis is that each archetype C-Q pattern can be generated by explicitly linking landscape-scale hydrologic responses and spatial distributions of solute source properties within a catchment. We compared observed multidecadal data to

  12. Trace metal partitioning over a tidal cycle in an estuary affected by acid mine drainage (Tinto estuary, SW Spain).

    PubMed

    Hierro, A; Olías, M; Cánovas, C R; Martín, J E; Bolivar, J P

    2014-11-01

    The Tinto River estuary is highly polluted with the acid lixiviates from old sulphide mines. In this work the behaviour of dissolved and particulate trace metals under strong chemical gradients during a tidal cycle is studied. The pH values range from 4.4 with low tide to 6.9 with high tide. Precipitation of Fe and Al is intense during rising tides and As and Pb are almost exclusively found in the particulate matter (PM). Sorption processes are very important in controlling the mobility (and hence bioavailability) of some metals and particularly affect Cu below pH 6. Above pH~6 Cu is desorbed, probably by the formation of Cu(I)-chloride complexes. Although less pronounced than Cu, also Zn desorption above pH 6.5 seems to occur. Mn and Co are affected by sorption processes at pH higher than ca. 6. Cd behaves conservatively and Ni is slightly affected by sorption processes.

  13. Understanding oceanic migrations with intrinsic biogeochemical markers.

    PubMed

    Ramos, Raül; González-Solís, Jacob; Croxall, John P; Oro, Daniel; Ruiz, Xavier

    2009-01-01

    Migratory marine vertebrates move annually across remote oceanic water masses crossing international borders. Many anthropogenic threats such as overfishing, bycatch, pollution or global warming put millions of marine migrants at risk especially during their long-distance movements. Therefore, precise knowledge about these migratory movements to understand where and when these animals are more exposed to human impacts is vital for addressing marine conservation issues. Because electronic tracking devices suffer from several constraints, mainly logistical and financial, there is emerging interest in finding appropriate intrinsic markers, such as the chemical composition of inert tissues, to study long-distance migrations and identify wintering sites. Here, using tracked pelagic seabirds and some of their own feathers which were known to be grown at different places and times within the annual cycle, we proved the value of biogeochemical analyses of inert tissue as tracers of marine movements and habitat use. Analyses of feathers grown in summer showed that both stable isotope signatures and element concentrations can signal the origin of breeding birds feeding in distinct water masses. However, only stable isotopes signalled water masses used during winter because elements mainly accumulated during the long breeding period are incorporated into feathers grown in both summer and winter. Our findings shed new light on the simple and effective assignment of marine organisms to distinct oceanic areas, providing new opportunities to study unknown migration patterns of secretive species, including in relation to human-induced mortality on specific populations in the marine environment. PMID:19623244

  14. Understanding oceanic migrations with intrinsic biogeochemical markers.

    PubMed

    Ramos, Raül; González-Solís, Jacob; Croxall, John P; Oro, Daniel; Ruiz, Xavier

    2009-07-22

    Migratory marine vertebrates move annually across remote oceanic water masses crossing international borders. Many anthropogenic threats such as overfishing, bycatch, pollution or global warming put millions of marine migrants at risk especially during their long-distance movements. Therefore, precise knowledge about these migratory movements to understand where and when these animals are more exposed to human impacts is vital for addressing marine conservation issues. Because electronic tracking devices suffer from several constraints, mainly logistical and financial, there is emerging interest in finding appropriate intrinsic markers, such as the chemical composition of inert tissues, to study long-distance migrations and identify wintering sites. Here, using tracked pelagic seabirds and some of their own feathers which were known to be grown at different places and times within the annual cycle, we proved the value of biogeochemical analyses of inert tissue as tracers of marine movements and habitat use. Analyses of feathers grown in summer showed that both stable isotope signatures and element concentrations can signal the origin of breeding birds feeding in distinct water masses. However, only stable isotopes signalled water masses used during winter because elements mainly accumulated during the long breeding period are incorporated into feathers grown in both summer and winter. Our findings shed new light on the simple and effective assignment of marine organisms to distinct oceanic areas, providing new opportunities to study unknown migration patterns of secretive species, including in relation to human-induced mortality on specific populations in the marine environment.

  15. Possible biogeochemical consequences of ocean fertilization

    SciTech Connect

    Fuhrman, J.A. ); Capone, D.G. )

    1991-12-01

    The authors consider biogeochemical secondary effects that could arise from an increase in ocean productivity, such as may occur via fertilization with Fe. These processes and feedback loops are infrequently discussed in this context, yet are likely to be highly relevant to the understanding of global change in general. In particular, the authors suggest that increased productivity may increase the production and efflux of greenhouse gases, such as nitrous oxide (N{sub 2}O) and methane (CH{sub 4}) and that shifts in phytoplankton species and productivity may cause changes in another climate-related gas, dimethylsulfide (DMS). N{sub 2}O is also implicated in the destruction of stratospheric ozone. Factors contributing to amplified release include both increased nutrient cycling in general and possible development of low oxygen conditions from fertilization. It is also remotely possible that reduced oxygen from an initial fertilization could mobilize existing Fe pools, inducing uncontrolled self-fertilization. Although lack of relevant physiological and ecological data makes it difficult to provide quantitative limits on the extent of the undesired effects, rough calculations suggest that the enhanced release of N{sub 2}O alone could totally negate any potential benefit from fertilization and likely worsen global warming and ozone depletion.

  16. Life cycle stage and water depth affect flooding-induced adventitious root formation in the terrestrial species Solanum dulcamara

    PubMed Central

    Zhang, Qian; Visser, Eric J. W.; de Kroon, Hans; Huber, Heidrun