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Sample records for affect biogeochemical processes

  1. Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin

    NASA Astrophysics Data System (ADS)

    Hagens, M.; Slomp, C. P.; Meysman, F. J. R.; Seitaj, D.; Harlay, J.; Borges, A. V.; Middelburg, J. J.

    2014-11-01

    Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity of the hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water column chemistry measurements were complemented with estimates of primary production and respiration using O2 light-dark incubations, in addition to sediment-water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting dataset was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air-sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment-water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid-base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid-base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.

  2. Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin

    NASA Astrophysics Data System (ADS)

    Hagens, M.; Slomp, C. P.; Meysman, F. J. R.; Seitaj, D.; Harlay, J.; Borges, A. V.; Middelburg, J. J.

    2015-03-01

    Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity in any hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water-column chemistry measurements were complemented with estimates of primary production and respiration using O2 light-dark incubations, in addition to sediment-water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting data set was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air-sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment-water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid-base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid-base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.

  3. Biogeochemical Processes in Microbial Ecosystems

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.

    2001-01-01

    The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life, and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and, potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial populations and their metabolic properties. Additional information is contained in the original extended abstract.

  4. Biogeochemical Processes in Microbial Ecosystems

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, Donald L. (Technical Monitor)

    2001-01-01

    The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial population, and their metabolic properties. Photosynthetic microbial mats offer an opportunity to define holistic functionality at the millimeter scale. At the same time, their Biogeochemistry contributes to environmental processes on a planetary scale. These mats are possibly direct descendents of the most ancient biological communities; communities in which oxygenic photosynthesis might have been invented. Mats provide one of the best natural systems to study how microbial populations associate to control dynamic biogeochemical gradients. These are self-sustaining, complete ecosystems in which light energy absorbed over a diel (24 hour) cycle drives the synthesis of spatially-organized, diverse biomass. Tightly-coupled microorganisms in the mat have specialized metabolisms that catalyze transformations of carbon, nitrogen. sulfur, and a host of other elements.

  5. Climate change effects on watershed hydrological and biogeochemical processes

    EPA Science Inventory

    Projected changes in climate are widely expected to alter watershed processes. However, the extent of these changes is difficult to predict because complex interactions among affected hydrological and biogeochemical processes will likely play out over many decades and spatial sc...

  6. A Conceptual Model of Coupled Biogeochemical and Hydrogeological Processes Affected by In Situ Cr(VI) Bioreduction in Groundwater at Hanford 100H Site

    NASA Astrophysics Data System (ADS)

    Faybishenko, B.; Long, P. E.; Hazen, T. C.; Hubbard, S. S.; Williams, K. H.; Peterson, J. E.; Chen, J.; Volkova, E. V.; Newcomer, D. R.; Resch, C. T.; Cantrell, K.; Conrad, M. S.; Brodie, E. L.; Joyner, D. C.; Borglin, S. E.; Chakraborty, R. C.

    2007-05-01

    The overall objective of this presentation is to demonstrate a conceptual multiscale, multidomain model of coupling of biogeochemical and hydrogeological processes during bioremediation of Cr(VI) contaminated groundwater at Hanford 100H site. A slow release polylactate, Hydrogen Release Compound (HRCTM), was injected in Hanford sediments to stimulate immobilization of Cr(VI). The HRC injection induced a 2-order-of- magnitude increase in biomass and the onset of reducing biogeochemical conditions [e.g., redox potential decreased from +240 to -130 mV and dissolved oxygen (DO) was completely removed]. A three-well system, comprised of an injection well and upgradient and downgradient monitoring wells, was used for conducting the in situ biostimulation, one regional flow (no-pumping) tracer test, and five pumping tests along with the Br-tracer injection. Field measurements were conducted using a Br ion-selective electrode and a multiparameter flow cell to collect hourly data on temperature, pH, redox potential, electrical conductivity, and DO. Groundwater sampling was conducted by pumping through specially designed borehole water samplers. Cross-borehole radar tomography and seismic measurements were carried out to assess the site background lithological heterogeneity and the migration pathways of HRC byproducts through groundwater after the HRC injection. Several alternative approaches, including conventional and fractional advective dispersion equations and geostatistical analysis, were used to characterize hydraulic and biogeochemical transport parameters. The results of a joint inversion of cross-borehole geophysical tomography and flow-rate measurements in boreholes indicate the presence of a bimodal distribution of hydraulic conductivity for Hanford sediments. The Br- concentration double-peak BTCs curves indicate that HRC injection caused an increase in the tracer travel time (mainly in the low-permeability zone) over the period of observations of about 2 years

  7. Indian Ocean Biogeochemical Processes and Ecological Variability

    NASA Astrophysics Data System (ADS)

    Ofori, Leslie

    2010-11-01

    The Sustained Indian Ocean Biogeochemistry and Ecosystem Research (SIBER) conference was held in 2006 in Goa, India. The goals of the workshop were to assess the known facts about basin-wide biogeochemical and ecological dynamics of the Indian Ocean, to answer major questions, and to draw a road map for future research. The AGU monograph Indian Ocean Biogeochemical Processes and Ecological Variability, edited by Jerry D. Wiggert, Raleigh R. Hood, S. Wajih A. Naqvi, Kenneth H. Brink, and Sharon L. Smith, synthesizes the talks that were presented at this conference. In this interview, Eos talks with Jerry Wiggert, assistant professor of marine science at University of Southern Mississippi, Hattiesburg.

  8. Biogeochemical processes underpin ecosystem services

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Elemental cycling is critical to the function of ecosystems and delivery of key ecosystem services because many of these elements are essential nutrients or detrimental toxicants that directly affect the health of organisms and ecosystems. A team of authors from North Carolina State University and ...

  9. Electric shortcuts of biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Nielsen, Lars Peter; Risgaard-Petersen, Nils; Fossing, Henrik; Christensen, Peter Bondo; Sayama, Mikio

    2010-05-01

    Recent observations in marine sediment have revealed conductive networks transmitting electrons from oxidation processes in the anoxic zone to oxygen reduction in the oxic zone. The involved electrochemical processes seem to be biologically catalyzed and may account for more than half of the oxygen uptake in laboratory incubations of initially homogenized and stabilized sediment. Using microsensors and process rate measurements we further investigated the effect of the electric currents on sediment biogeochemistry. Dissolved sulfide readily donated electrons to the networks and could be depleted below detection limit in a several cm thick layer below the oxic zone. Subsequent dissolution of iron sulphide was indicated by mobilization of ferrous iron being precipitated again as ferric iron at the oxic-anoxic interface. Lowered sulphate reduction rates in the upper centimeters of the sediment confirmed the depth range of the electric communication and indicated donation of electrons directly from organotrophic bacteria. The separation of oxidation and reduction processes created steep pH gradients eventually causing carbonate precipitation at the surface and probably also carbonate dissolution at depth. We suggest that the electric currents allowing reactions between compounds far from one another have significant effects in natural marine sediments as well as other environments with redox gradients.

  10. Diel biogeochemical processes in terrestrial waters

    USGS Publications Warehouse

    Compiled and Edited by Nimick, David A.; Gammons, Christopher H.

    2011-01-01

    Many biogeochemical processes in rivers and lakes respond to the solar photocycle and produce persistent patterns of measureable phenomena that exhibit a day-night, or 24-h, cycle. Despite a large body of recent literature, the mechanisms responsible for these diel fluctuations are widely debated, with a growing consensus that combinations of physical, chemical, and biological processes are involved. These processes include streamflow variation, photosynthesis and respiration, plant assimilation, and reactions involving photochemistry, adsorption and desorption, and mineral precipitation and dissolution. Diel changes in streamflow and water properties such as temperature, pH, and dissolved oxygen concentration have been widely recognized, and recently, diel studies have focused more widely by considering other constituents such as dissolved and particulate trace metals, metalloids, rare earth elements, mercury, organic matter, dissolved inorganic carbon (DIC), and nutrients. The details of many diel processes are being studied using stable isotopes, which also can exhibit diel cycles in response to microbial metabolism, photosynthesis and respiration, or changes in phase, speciation, or redox state. In addition, secondary effects that diel cycles might have, for example, on biota or in the hyporheic zone are beginning to be considered. This special issue is composed primarily of papers presented at the topical session "Diurnal Biogeochemical Processes in Rivers, Lakes, and Shallow Groundwater" held at the annual meeting of the Geological Society of America in October 2009 in Portland, Oregon. This session was organized because many of the growing number of diel studies have addressed just a small part of the full range of diel cycling phenomena found in rivers and lakes. This limited focus is understandable because (1) fundamental aspects of many diel processes are poorly understood and require detailed study, (2) the interests and expertise of individual

  11. An approach to quantify sources, seasonal change, and biogeochemical processes affecting metal loading in streams: Facilitating decisions for remediation of mine drainage

    USGS Publications Warehouse

    Kimball, B.A.; Runkel, R.L.; Walton-Day, K.

    2010-01-01

    Historical mining has left complex problems in catchments throughout the world. Land managers are faced with making cost-effective plans to remediate mine influences. Remediation plans are facilitated by spatial mass-loading profiles that indicate the locations of metal mass-loading, seasonal changes, and the extent of biogeochemical processes. Field-scale experiments during both low- and high-flow conditions and time-series data over diel cycles illustrate how this can be accomplished. A low-flow experiment provided spatially detailed loading profiles to indicate where loading occurred. For example, SO42 - was principally derived from sources upstream from the study reach, but three principal locations also were important for SO42 - loading within the reach. During high-flow conditions, Lagrangian sampling provided data to interpret seasonal changes and indicated locations where snowmelt runoff flushed metals to the stream. Comparison of metal concentrations between the low- and high-flow experiments indicated substantial increases in metal loading at high flow, but little change in metal concentrations, showing that toxicity at the most downstream sampling site was not substantially greater during snowmelt runoff. During high-flow conditions, a detailed temporal sampling at fixed sites indicated that Zn concentration more than doubled during the diel cycle. Monitoring programs must account for diel variation to provide meaningful results. Mass-loading studies during different flow conditions and detailed time-series over diel cycles provide useful scientific support for stream management decisions.

  12. Global Biology Research Program: Biogeochemical Processes in Wetlands

    NASA Technical Reports Server (NTRS)

    Bartlett, D. S. (Editor)

    1984-01-01

    The results of a workshop examining potential NASA contributions to research on wetland processes as they relate to global biogeochemical cycles are summarized. A wetlands data base utilizing remotely sensed inventories, studies of wetland/atmosphere exchange processes, and the extrapolation of local measurements to global biogeochemical cycling processes were identified as possible areas for NASA support.

  13. Coupling of hydrodynamic and biogeochemical processes at aquatic interfaces

    NASA Astrophysics Data System (ADS)

    Lewandowski, Jörg; Krause, Stefan

    2015-04-01

    The overall aim of this contribution is a general conceptual framework for aquatic interfaces that is applicable to a wide range of systems, scales and processes. Aquatic interfaces are characterized by steep physical, chemical and biological gradients due to the contrast between the two adjacent environments. Investigating the spatially heterogeneous and temporally variable hydrodynamic and biogeochemical processes requires innovative monitoring technologies and sophisticated measurement techniques that can cope with different spatial scales. Although enhanced biogeochemical processing rates are inherent to aquatic interfaces due to their steep biogeochemical gradients and their intensive structural and compositional heterogeneity, the effective turnover depends strongly on the residence time distribution along the flow paths with their particular biogeochemical milieus and reaction kinetics. Thus, identification and characterization of the highly complex flow patterns in and across aquatic interfaces are crucial to understand biogeochemical processing along exchange flow paths and to quantify transport across aquatic interfaces; i.e. hydrodynamic and biogeochemical processes are closely interlinked. But interface processing rates are not only enhanced compared to the adjacent compartments that they connect; also completely different reactions might occur if certain thresholds are exceeded or the biogeochemical milieu differs significantly from the adjacent environments. Single events, temporal variability and spatial heterogeneity might increase overall processing rates of aquatic interfaces and thus, should not be neglected when studying aquatic interfaces. Aquatic interfaces are key zones relevant for the ecological state of the entire ecosystem and thus, understanding interface functioning and controls is paramount for ecosystem management.

  14. Biogeochemical Process Comparison of the Five USGS Water, Energy, and Biogeochemical Budget (WEBB) Sites

    NASA Astrophysics Data System (ADS)

    Shanley, J. B.; Peters, N. E.; Aulenbach, B. T.; Blum, A. E.; Campbell, D. H.; Clow, D. W.; Larsen, M. C.; Mast, M. A.; Stallard, R. F.; Troester, J. W.; Walker, J. F.; Webb, R. M.; White, A. F.

    2001-12-01

    Input - output budgets (in wet deposition and streamwater) have been constructed for water and major solutes at the five USGS Water, Energy, and Biogeochemical Budget (WEBB) sites for the period 1992-97 (Peters et al., 2000). In this poster we interpret the net chemical fluxes to identify the controlling biogeochemical processes, as influenced by the strong physical and biological contrasts (climate, geology, physiography, and vegetation types) in the five diverse environments. The five sites are: Allequash Creek, Wisconsin (low-relief humid continental forest); Andrews Creek, Colorado (cold alpine, taiga/tundra, and subalpine boreal forest); Icacos River, Puerto Rico (lower montane, wet tropical forest); Panola Mountain, Georgia (humid subtropical piedmont forest); and Sleepers River, Vermont (humid northern hardwood forest). Base cations and Si produced by chemical weathering displayed a net export at each site. The magnitude and stoichiometry of export reflects mineralogy, climate (temperature and rainfall), and water residence time in the subsurface. The lowest and highest mass export generally was for Andrews Creek and Icacos River, respectively, consistent with their extreme mean annual temperatures (0/degC in Colorado to 21/degC in Puerto Rico) and the limited residence time of meltwater at Andrews Creek. Calcite in bedrock at the three coldest watersheds caused somewhat higher relative export of Ca, especially at Sleepers River where calcite weathering is a dominant control on stream chemistry. In contrast, the high Mg content of the volcaniclastic rocks at Icacos River and glacial deposits at Allequash Creek caused disproportionately high Mg export relative to the other sites. Relatively high Na export at Panola Mountain and K export at Sleepers River are probably caused by plagioclase and biotite weathering, respectively. SO4 is retained at the two warmest sites, Panola Mountain and Icacos River. SO4 adsorption is known to limit SO4- export in highly

  15. Diel biogeochemical processes and their effect on the aqueous chemistry of streams: A review

    USGS Publications Warehouse

    Nimick, David A.; Gammons, Christopher H.; Parker, Stephen R.

    2011-01-01

    This review summarizes biogeochemical processes that operate on diel, or 24-h, time scales in streams and the changes in aqueous chemistry that are associated with these processes. Some biogeochemical processes, such as those producing diel cycles of dissolved O2 and pH, were the first to be studied, whereas processes producing diel concentration cycles of a broader spectrum of chemical species including dissolved gases, dissolved inorganic and organic carbon, trace elements, nutrients, stable isotopes, and suspended particles have received attention only more recently. Diel biogeochemical cycles are interrelated because the cyclical variations produced by one biogeochemical process commonly affect another. Thus, understanding biogeochemical cycling is essential not only for guiding collection and interpretation of water-quality data but also for geochemical and ecological studies of streams. Expanded knowledge of diel biogeochemical cycling will improve understanding of how natural aquatic environments function and thus lead to better predictions of how stream ecosystems might react to changing conditions of contaminant loading, eutrophication, climate change, drought, industrialization, development, and other factors.

  16. A General Simulator for Reaction-Based Biogeochemical Processes

    SciTech Connect

    Fang, Yilin; Yabusaki, Steven B.; Yeh, George

    2006-02-01

    As more complex biogeochemical situations are being investigated (e.g., evolving reactivity, passivation of reactive surfaces, dissolution of sorbates), there is a growing need for biogeochemical simulators to flexibly and facilely address new reaction forms and rate laws. This paper presents an approach that accommodates this need to efficiently simulate general biogeochemical processes, while insulating the user from additional code development. The approach allows for the automatic extraction of fundamental reaction stoichiometry and thermodynamics from a standard chemistry database, and the symbolic entry of arbitrarily complex user-specified reaction forms, rate laws, and equilibria. The user-specified equilibrium and kinetic reactions (i.e., reactions not defined in the format of the standardized database) are interpreted by the Maple symbolic mathematical software package. FORTRAN 90 code is then generated by Maple for (1) the analytical Jacobian matrix (if preferred over the numerical Jacobian matrix) used in the Newton-Raphson solution procedure, and (2) the residual functions for user-specified equilibrium expressions and rate laws. Matrix diagonalization eliminates the need to conceptualize the system of reactions as a tableau, while identifying a minimum rank set of basis species with enhanced numerical convergence properties. The newly generated code, which is designed to operate in the BIOGEOCHEM biogeochemical simulator, is then compiled and linked into the BIOGEOCHEM executable. With these features, users can avoid recoding the simulator to accept new equilibrium expressions or kinetic rate laws, while still taking full advantage of the stoichiometry and thermodynamics provided by an existing chemical database. Thus, the approach introduces efficiencies in the specification of biogeochemical reaction networks and eliminates opportunities for mistakes in preparing input files and coding errors. Test problems are used to demonstrate the features of

  17. A Reactive Transport Simulator for Biogeochemical Processes in Subsurface System

    2003-04-01

    BIOGEOCHEM is a Fortran code that mumerically simulates the coupled processes of solute transport, microbial population dynamics, microbial metabolism, and geochemical reactions. The potential applications of the code include, but not limited to, (a) sensitivity and uncertainty analyses for assessing the impact of microbial activity on subsurface geochemical systems; (b) extraction of biogeochemical parameter values from field observations or laboratory measurements, (c) helping to design and optimize laboratory biogeochemical experiments, and (d) data integration. Methodmore » of Solution: A finite difference method and a Newton-Raphson technique are used to solve a set of coupled nonlinear partial differential equations and algebraic equations. Practical Application: Environmental analysis, bioremediation performance assessments of radioactive or non-radioactive wase disposal, and academic research.« less

  18. Polychlorinated Biphenyls as Probes of Biogeochemical Processes in Rivers

    USGS Publications Warehouse

    Fitzgerald, S.A.; Steuer, J.J.

    1997-01-01

    A field study was conducted to investigate the use of PCB (polychlorinated biphenyl) congener and homolog assemblages as tracers of biogeochemical processes in the Milwaukee and Manitowoc Rivers in southeastern Wisconsin from 1993 to 1995. PCB congeners in the dissolved and suspended particle phases, along with various algal indicators (algal carbon and pigments), were quantitated in the water seasonally. In addition, PCB congener assemblages were determined seasonally in surficial bed sediments. Biogeochemical processes investigated included: determination of the source of suspended particles and bottom sediments by comparison with known Aroclor mixtures, water-solid partitioning, and algal uptake of PCBs. Seasonal differences among the PCB assemblages were observed mainly in the dissolved phase, somewhat less in the suspended particulate phase, and not at all in the bed sediments.

  19. Implementing high-latitude biogeochemical processes into Earth System Models

    NASA Astrophysics Data System (ADS)

    Brovkin, Victor; Kleinen, Thomas; Cresto-Aleina, Fabio; Kloster, Silvia; Ilyina, Tatiana

    2016-04-01

    Projections of future climate changes suggest that air temperatures in the Arctic could rise to the levels unprecedented in the last million years. Sensitivity of carbon storages on land and shelves to climate change of that scale is highly uncertain. Earth System models (ESMs), consisting of atmosphere, ocean, land, and cryosphere components are the main tools to understand interactions between carbon cycle and climate. However, ESM representation of ecological and biogeochemical processes in the Arctic is extremely simplistic. For example, all ESMs agree that tree cover in the future warming scenarios will move northwards to the Arctic coast, but they ignore interactions between vegetation, permafrost, and disturbances such as fires, which are critical for vegetation dynamics in this region. Improving modeling of interactions between model components and their evaluation against growing observational evidence is a promising research area. The first attempts to account for the permafrost carbon dynamics in the ESM framework suggest that CO2 and CH4 emissions from high-latitude regions in the 21st century are relatively small, but they become much more significant afterwards due to committed climate changes. Therefore, extension of ESM simulations beyond 2100 is essential to estimate a proper scale of frozen carbon pool response to human-induced climate change. Additionally, inclusion of sub-sea permafrost component into ESMs is an active research area that brings together terrestrial and marine biogeochemical communities, as well as geologists analyzing climate proxies on glacial timescales. Another challenging aspect of biogeochemical interactions in Arctic is an extreme land surface heterogeneity. A mixture of wetlands, lakes, and vegetation-covered surfaces on fine local scale is not properly reflected in the model structure. A promising approach of dealing with scaling gaps in modeling high-latitude biogeochemical processes in ESMs will be presented.

  20. Silicon biogeochemical processes in a large river (Cauvery, India)

    NASA Astrophysics Data System (ADS)

    Kameswari Rajasekaran, Mangalaa; Arnaud, Dapoigny; Jean, Riotte; Sarma Vedula, V. S. S.; Nittala, S. Sarma; Sankaran, Subramanian; Gundiga Puttojirao, Gurumurthy; Keshava, Balakrishna; Cardinal, Damien

    2016-04-01

    Silicon (Si), one of the key nutrients for diatom growth in ocean, is principally released during silicate weathering on continents and then exported by rivers. Phytoplankton composition is determined by the availability of Si relative to other nutrients, mainly N and P, which fluxes in estuarine and coastal systems are affected by eutrophication due to land use and industrialization. In order to understand the biogeochemical cycle of Si and its supply to the coastal ocean, we studied a tropical monsoonal river from Southern India (Cauvery) and compare it with other large and small rivers. Cauvery is the 7th largest river in India with a basin covering 85626 sq.km. The major part of the basin (˜66%) is covered by agriculture and inhabited by more than 30 million inhabitants. There are 96 dams built across the basin. As a consequence, 80% of the historical discharge is diverted, mainly for irrigation (Meunier et al. 2015). This makes the Cauvery River a good example of current anthropogenic pressure on silicon biogeochemical cycle. We measured amorphous silica contents (ASi) and isotopic composition of dissolved silicon (δ30Si-DSi) in the Cauvery estuary, including freshwater end-member and groundwater as well as along a 670 km transect along the river course. Other Indian rivers and estuaries have also been measured, including some less impacted by anthropogenic pressure. The average Cauvery δ30Si signature just upstream the estuary is 2.21±0.15 ‰ (n=3) which is almost 1‰ heavier than the groundwater isotopic composition (1.38±0.03). The δ30Si-DSi of Cauvery water is also almost 1‰ heavier than the world river supply to the ocean estimated so far and 0.4‰ heavier than other large Indian rivers like Ganges (Frings et al 2015) and Krishna. On the other hand, the smaller watersheds (Ponnaiyar, Vellar, and Penna) adjacent to Cauvery also display heavy δ30Si-DSi. Unlike the effect of silicate weathering, the heavy isotopic compositions in the river

  1. Key biogeochemical factors affecting soil carbon storage in Posidonia meadows

    NASA Astrophysics Data System (ADS)

    Serrano, Oscar; Ricart, Aurora M.; Lavery, Paul S.; Mateo, Miguel Angel; Arias-Ortiz, Ariane; Masque, Pere; Rozaimi, Mohammad; Steven, Andy; Duarte, Carlos M.

    2016-08-01

    Biotic and abiotic factors influence the accumulation of organic carbon (Corg) in seagrass ecosystems. We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of Corg. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4 m depth) accumulated 3- to 4-fold higher Corg stocks (averaging 6.3 kg Corg m-2) at 3- to 4-fold higher rates (12.8 g Corg m-2 yr-1) compared to meadows closer to the deep limits of distribution (at 6-8 m depth; 1.8 kg Corg m-2 and 3.6 g Corg m-2 yr-1). In shallower meadows, Corg stocks were mostly derived from seagrass detritus (88 % in average) compared to meadows closer to the deep limit of distribution (45 % on average). In addition, soil accumulation rates and fine-grained sediment content (< 0.125 mm) in shallower meadows (2.0 mm yr-1 and 9 %, respectively) were approximately 2-fold higher than in deeper meadows (1.2 mm yr-1 and 5 %, respectively). The Corg stocks and accumulation rates accumulated over the last 500 years in bare sediments (0.6 kg Corg m-2 and 1.2 g Corg m-2 yr-1) were 3- to 11-fold lower than in P. sinuosa meadows, while fine-grained sediment content (1 %) and seagrass detritus contribution to the Corg pool (20 %) were 8- and 3-fold lower than in Posidonia meadows, respectively. The patterns found support the hypothesis that Corg storage in seagrass soils is influenced by interactions of biological (e.g., meadow productivity, cover and density), chemical (e.g., recalcitrance of Corg stocks) and physical (e.g., hydrodynamic energy and soil accumulation rates) factors within the meadow. We conclude that there is a need to improve global estimates of seagrass carbon storage accounting for biogeochemical factors driving variability within habitats.

  2. Key biogeochemical factors affecting soil carbon storage in Posidonia meadows

    NASA Astrophysics Data System (ADS)

    Serrano, O.; Ricart, A. M.; Lavery, P. S.; Mateo, M. A.; Arias-Ortiz, A.; Masque, P.; Steven, A.; Duarte, C. M.

    2015-11-01

    Biotic and abiotic factors influence the accumulation of organic carbon (Corg) in seagrass ecosystems. We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of Corg. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4 m depth) accumulated 3 to 4-fold higher Corg stocks (averaging 6.3 kg Corg m-2) at 3 to 4-fold higher rates (12.8 g Corg m-2 yr-1) compared to meadows closer to the deep limits of distribution (at 6-8 m depth; 1.8 kg Corg m-2 and 3.6 g Corg m-2 yr-1). In shallower meadows, Corg stores were mostly derived from seagrass detritus (88 % in average) compared to meadows closer to the deep limit of distribution (45 % on average). Also, sediment accumulation rates and fine-grained sediment content (< 0.125 mm) in shallower meadows (2.0 mm yr-1 and 9 %, respectively) were approximately 2-fold higher than in deeper meadows (1.2 mm yr-1 and 5 %, respectively). The Corg stocks and accumulation rates accumulated over the last 500 years in bare sediments (0.6 kg Corg m-2 and 1.2 g Corg m-2 yr-1) were 3 to 11-fold lower than in P. sinuosa meadows, while fine-grained sediment content (1 %) and seagrass detritus contribution to the Corg pool (20 %) were 8 and 3-fold lower than in Posidonia meadows, respectively. The patterns found support the hypotheses that Corg storage in seagrass soils is influenced by interactions of biological (e.g. meadow productivity, cover and density), chemical (e.g. recalcitrance of Corg stocks) and physical (e.g. hydrodynamic energy and sediment accumulation rates) factors within the meadow. We conclude that there is a need to improve global estimates of seagrass carbon storage accounting for biogeochemical factors driving variability within habitats.

  3. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes.

    PubMed

    Long, Philip E; Williams, Kenneth H; Hubbard, Susan S; Banfield, Jillian F

    2016-08-01

    Microorganisms play key roles in terrestrial system processes, including the turnover of natural organic carbon, such as leaf litter and woody debris that accumulate in soils and subsurface sediments. What has emerged from a series of recent DNA sequencing-based studies is recognition of the enormous variety of little known and previously unknown microorganisms that mediate recycling of these vast stores of buried carbon in subsoil compartments of the terrestrial system. More importantly, the genome resolution achieved in these studies has enabled association of specific members of these microbial communities with carbon compound transformations and other linked biogeochemical processes-such as the nitrogen cycle-that can impact the quality of groundwater, surface water, and atmospheric trace gas concentrations. The emerging view also emphasizes the importance of organism interactions through exchange of metabolic byproducts (e.g., within the carbon, nitrogen, and sulfur cycles) and via symbioses since many novel organisms exhibit restricted metabolic capabilities and an associated extremely small cell size. New, genome-resolved information reshapes our view of subsurface microbial communities and provides critical new inputs for advanced reactive transport models. These inputs are needed for accurate prediction of feedbacks in watershed biogeochemical functioning and their influence on the climate via the fluxes of greenhouse gases, CO2, CH4, and N2O.

  4. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes.

    PubMed

    Long, Philip E; Williams, Kenneth H; Hubbard, Susan S; Banfield, Jillian F

    2016-08-01

    Microorganisms play key roles in terrestrial system processes, including the turnover of natural organic carbon, such as leaf litter and woody debris that accumulate in soils and subsurface sediments. What has emerged from a series of recent DNA sequencing-based studies is recognition of the enormous variety of little known and previously unknown microorganisms that mediate recycling of these vast stores of buried carbon in subsoil compartments of the terrestrial system. More importantly, the genome resolution achieved in these studies has enabled association of specific members of these microbial communities with carbon compound transformations and other linked biogeochemical processes-such as the nitrogen cycle-that can impact the quality of groundwater, surface water, and atmospheric trace gas concentrations. The emerging view also emphasizes the importance of organism interactions through exchange of metabolic byproducts (e.g., within the carbon, nitrogen, and sulfur cycles) and via symbioses since many novel organisms exhibit restricted metabolic capabilities and an associated extremely small cell size. New, genome-resolved information reshapes our view of subsurface microbial communities and provides critical new inputs for advanced reactive transport models. These inputs are needed for accurate prediction of feedbacks in watershed biogeochemical functioning and their influence on the climate via the fluxes of greenhouse gases, CO2, CH4, and N2O. PMID:27156744

  5. Deriving forest fire ignition risk with biogeochemical process modelling☆

    PubMed Central

    Eastaugh, C.S.; Hasenauer, H.

    2014-01-01

    Climate impacts the growth of trees and also affects disturbance regimes such as wildfire frequency. The European Alps have warmed considerably over the past half-century, but incomplete records make it difficult to definitively link alpine wildfire to climate change. Complicating this is the influence of forest composition and fuel loading on fire ignition risk, which is not considered by purely meteorological risk indices. Biogeochemical forest growth models track several variables that may be used as proxies for fire ignition risk. This study assesses the usefulness of the ecophysiological model BIOME-BGC's ‘soil water’ and ‘labile litter carbon’ variables in predicting fire ignition. A brief application case examines historic fire occurrence trends over pre-defined regions of Austria from 1960 to 2008. Results show that summer fire ignition risk is largely a function of low soil moisture, while winter fire ignitions are linked to the mass of volatile litter and atmospheric dryness. PMID:26109905

  6. Temporal dynamics of biogeochemical processes at the Norman Landfill site

    NASA Astrophysics Data System (ADS)

    Arora, Bhavna; Mohanty, Binayak P.; McGuire, Jennifer T.; Cozzarelli, Isabelle M.

    2013-10-01

    The temporal variability observed in redox sensitive species in groundwater can be attributed to coupled hydrological, geochemical, and microbial processes. These controlling processes are typically nonstationary, and distributed across various time scales. Therefore, the purpose of this study is to investigate biogeochemical data sets from a municipal landfill site to identify the dominant modes of variation and determine the physical controls that become significant at different time scales. Data on hydraulic head, specific conductance, δ2H, chloride, sulfate, nitrate, and nonvolatile dissolved organic carbon were collected between 1998 and 2000 at three wells at the Norman Landfill site in Norman, OK. Wavelet analysis on this geochemical data set indicates that variations in concentrations of reactive and conservative solutes are strongly coupled to hydrologic variability (water table elevation and precipitation) at 8 month scales, and to individual eco-hydrogeologic framework (such as seasonality of vegetation, surface-groundwater dynamics) at 16 month scales. Apart from hydrologic variations, temporal variability in sulfate concentrations can be associated with different sources (FeS cycling, recharge events) and sinks (uptake by vegetation) depending on the well location and proximity to the leachate plume. Results suggest that nitrate concentrations show multiscale behavior across temporal scales for different well locations, and dominant variability in dissolved organic carbon for a closed municipal landfill can be larger than 2 years due to its decomposition and changing content. A conceptual framework that explains the variability in chemical concentrations at different time scales as a function of hydrologic processes, site-specific interactions, and/or coupled biogeochemical effects is also presented.

  7. Temporal dynamics of biogeochemical processes at the Norman Landfill site

    USGS Publications Warehouse

    Arora, Bhavna; Mohanty, Binayak P.; McGuire, Jennifer T.; Cozzarelli, Isabelle M.

    2013-01-01

    The temporal variability observed in redox sensitive species in groundwater can be attributed to coupled hydrological, geochemical, and microbial processes. These controlling processes are typically nonstationary, and distributed across various time scales. Therefore, the purpose of this study is to investigate biogeochemical data sets from a municipal landfill site to identify the dominant modes of variation and determine the physical controls that become significant at different time scales. Data on hydraulic head, specific conductance, δ2H, chloride, sulfate, nitrate, and nonvolatile dissolved organic carbon were collected between 1998 and 2000 at three wells at the Norman Landfill site in Norman, OK. Wavelet analysis on this geochemical data set indicates that variations in concentrations of reactive and conservative solutes are strongly coupled to hydrologic variability (water table elevation and precipitation) at 8 month scales, and to individual eco-hydrogeologic framework (such as seasonality of vegetation, surface-groundwater dynamics) at 16 month scales. Apart from hydrologic variations, temporal variability in sulfate concentrations can be associated with different sources (FeS cycling, recharge events) and sinks (uptake by vegetation) depending on the well location and proximity to the leachate plume. Results suggest that nitrate concentrations show multiscale behavior across temporal scales for different well locations, and dominant variability in dissolved organic carbon for a closed municipal landfill can be larger than 2 years due to its decomposition and changing content. A conceptual framework that explains the variability in chemical concentrations at different time scales as a function of hydrologic processes, site-specific interactions, and/or coupled biogeochemical effects is also presented.

  8. Characterization of Coupled Hydrologic-Biogeochemical Processes Using Geophysical Data

    SciTech Connect

    Hubbard, Susan

    2005-06-01

    Biogeochemical and hydrological processes are naturally coupled and variable over a wide range of spatial and temporal scales. Many remediation approaches also induce dynamic transformations in natural systems, such as the generation of gases, precipitates and biofilms. These dynamic transformations are often coupled and can reduce the hydraulic conductivity of the geologic materials, making it difficult to introduce amendments or to perform targeted remediation. Because it is difficult to predict these transformations, our ability to develop effective and sustainable remediation conditions at contaminated sites is often limited. Further complicating the problem is the inability to collect the necessary measurements at a high enough spatial resolution yet over a large enough volume for understanding field-scale transformations.

  9. Impacts of Hydrological and Biogeochemical Process Synchrony Transcend Scale

    NASA Astrophysics Data System (ADS)

    Spence, C.; Kokelj, S.; McCluskie, M.; Hedstrom, N.

    2015-12-01

    In portions of the circumpolar north, there are documented cases of increases in annual inorganic nitrogen loading. Confounding the explanation of this phenomenon is a lack of accompanying annual trends in streamflow, precipitation or atmospheric nitrogen deposition. Evidence from Canada's subarctic suggests this dichotomy could be due to three key non-linearities in the predominant biogeochemical and hydrological processes. Because snowfall changes to rainfall near the zero degree air temperature isotherm, there has been an increase in late autumn rainfall across the region due to earlier passage of precipitation generating cold fronts. Runoff generation in cold regions is often a storage threshold-mediated process, and the enhanced rainfall results in more common exceedance of these thresholds and higher winter streamflow. Finally, net mineralization rates in regional lakes peak in winter following the onset of ice cover. Subtle increases in monthly rainfall at specific times of the year can permit hydro-chemical process synchrony within watersheds that enhances annual inorganic nitrogen loading, implying that the impacts of process synchrony transcend scale. The presence of shifts in nitrogen export suggests that sustained regular process synchrony can modify system states. Sound understanding of system processes and interactions across scales will be needed to properly predict impacts and make sound decisions when managing watersheds and competing resource demands.

  10. Biogeochemical Considerations

    NASA Technical Reports Server (NTRS)

    Delwiche, C. C.

    1984-01-01

    Some questions relating to biogeochemical cycles and the nature of the biosphere driving them is best approached by means of remote (satellite) monitoring. Important among these are the distribution of various ecosystems and the boundaries between them, the extent and rate of modification of ecosystems by human or other factors, and various climatic and physical factors affecting ecosystem performance as influenced by human or natural processes.

  11. Biogeochemical factors affecting the presence of 210Po in groundwater

    USGS Publications Warehouse

    Seiler, R.L.; Stillings, L.L.; Cutler, N.; Salonen, L.; Outola, I.

    2011-01-01

    The discovery of natural 210Po enrichment at levels exceeding 500 mBq/L in numerous domestic wells in northern Nevada, USA, led to a geochemical investigation of the processes responsible for its mobilization. 210Po activities in 63 domestic and public-supply wells ranged from below 1 mBq/L to 6590 ± 590 mBq/L, among the highest reported levels in the USA. There is little spatial or depth variability in 210Pb activity in study-area sediments and mobilization of a few percent of the 210Po in the sediments would account for all of the 210Po in water. Stable-isotope measurements indicate SO4 reduction has occurred in all 210Po contaminated wells. Sulfide species are not accumulating in the groundwater in much of Lahontan Valley, probably because of S cycling involving microbial SO4 reduction, abiotic oxidation of H2S to S0 by Mn(IV), followed by microbial disproportionation of S0 to H2S and SO4. The high pH, Ca depletion, MnCO3 saturation, and presence of S0 in Lahontan Valley groundwater may be consequences of the anaerobic S cycling. Consistent with data from naturally-enriched wells in Florida, 210Po activities begin to decrease when aqueous sulfide species begin to accumulate. This may be due to formation and precipitation of PoS, however, Eh–pH diagrams suggest PoS would not be stable in study-area groundwater. An alternative explanation for the study area is that H2S accumulation begins when anaerobic S cycling stops because Mn oxides are depleted and their reduction is no longer releasing 210Po. Common features of 210Po-enriched groundwater were identified by comparing the radiological and geochemical data from Nevada with data from naturally-enriched wells in Finland, and Florida and Maryland in the USA. Values of pH ranged from 9 in Nevada wells, indicating that pH is not critical in determining whether 210Po is present. Where U is present in the sediments, the data suggest 210Po levels may be elevated in aquifers with (1) SO4-reducing waters with low H2S

  12. Hyporheic flow and transport processes: mechanisms, models, and biogeochemical implications

    USGS Publications Warehouse

    Boano, Fulvio; Harvey, Judson W.; Marion, Andrea; Packman, Aaron I.; Revelli, Roberto; Ridolfi, Luca; Anders, Wörman

    2014-01-01

    Fifty years of hyporheic zone research have shown the important role played by the hyporheic zone as an interface between groundwater and surface waters. However, it is only in the last two decades that what began as an empirical science has become a mechanistic science devoted to modeling studies of the complex fluid dynamical and biogeochemical mechanisms occurring in the hyporheic zone. These efforts have led to the picture of surface-subsurface water interactions as regulators of the form and function of fluvial ecosystems. Rather than being isolated systems, surface water bodies continuously interact with the subsurface. Exploration of hyporheic zone processes has led to a new appreciation of their wide reaching consequences for water quality and stream ecology. Modern research aims toward a unified approach, in which processes occurring in the hyporheic zone are key elements for the appreciation, management, and restoration of the whole river environment. In this unifying context, this review summarizes results from modeling studies and field observations about flow and transport processes in the hyporheic zone and describes the theories proposed in hydrology and fluid dynamics developed to quantitatively model and predict the hyporheic transport of water, heat, and dissolved and suspended compounds from sediment grain scale up to the watershed scale. The implications of these processes for stream biogeochemistry and ecology are also discussed."

  13. Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications

    NASA Astrophysics Data System (ADS)

    Boano, F.; Harvey, J. W.; Marion, A.; Packman, A. I.; Revelli, R.; Ridolfi, L.; Wörman, A.

    2014-12-01

    Fifty years of hyporheic zone research have shown the important role played by the hyporheic zone as an interface between groundwater and surface waters. However, it is only in the last two decades that what began as an empirical science has become a mechanistic science devoted to modeling studies of the complex fluid dynamical and biogeochemical mechanisms occurring in the hyporheic zone. These efforts have led to the picture of surface-subsurface water interactions as regulators of the form and function of fluvial ecosystems. Rather than being isolated systems, surface water bodies continuously interact with the subsurface. Exploration of hyporheic zone processes has led to a new appreciation of their wide reaching consequences for water quality and stream ecology. Modern research aims toward a unified approach, in which processes occurring in the hyporheic zone are key elements for the appreciation, management, and restoration of the whole river environment. In this unifying context, this review summarizes results from modeling studies and field observations about flow and transport processes in the hyporheic zone and describes the theories proposed in hydrology and fluid dynamics developed to quantitatively model and predict the hyporheic transport of water, heat, and dissolved and suspended compounds from sediment grain scale up to the watershed scale. The implications of these processes for stream biogeochemistry and ecology are also discussed.

  14. Nitrate attenuation in groundwater: a review of biogeochemical controlling processes.

    PubMed

    Rivett, Michael O; Buss, Stephen R; Morgan, Philip; Smith, Jonathan W N; Bemment, Chrystina D

    2008-10-01

    Biogeochemical processes controlling nitrate attenuation in aquifers are critically reviewed. An understanding of the fate of nitrate in groundwater is vital for managing risks associated with nitrate pollution, and to safeguard groundwater supplies and groundwater-dependent surface waters. Denitrification is focused upon as the dominant nitrate attenuation process in groundwater. As denitrifying bacteria are essentially ubiquitous in the subsurface, the critical limiting factors are oxygen and electron donor concentration and availability. Variability in other environmental conditions such as nitrate concentration, nutrient availability, pH, temperature, presence of toxins and microbial acclimation appears to be less important, exerting only secondary influences on denitrification rates. Other nitrate depletion mechanisms such as dissimilatory nitrate reduction to ammonium and assimilation of nitrate into microbial biomass are unlikely to be important in most subsurface settings relative to denitrification. Further research is recommended to improve current understanding on the influence of organic carbon, sulphur and iron electron donors, physical restrictions on microbial activity in dual porosity aquifers, influences of environmental condition (e.g. pH in poorly buffered environments and salinity in coastal or salinized soil settings), co-contaminant influences (particularly the contrasting inhibitory and electron donor influences of pesticides) and improved quantification of denitrification rates in the laboratory and field.

  15. Coupled Biogeochemical Process Evaluation for Conceptualizing Trichloroethylene Co-Metabolism

    SciTech Connect

    Colwell, Frederick; Radtke, Corey; Newby, Deborah; Delwiche, Mark; Crawf, Ronald L.; Paszczynski, Andrzej; Strap, Janice; Conrad, Mark; Brodic, Eoin; Starr, Robert; Lee, Hope

    2006-04-05

    Chlorinated solvent wastes (e.g., trichloroethene or TCE) often occur as diffuse subsurface plumes in complex geological environments where coupled processes must be understood in order to implement remediation strategies. Monitored natural attenuation (MNA) warrants study as a remediation technology because it minimizes worker and environment exposure to the wastes and because it costs less than other technologies. However, to be accepted MNA requires 'lines of evidence' indicating that the wastes are effectively destroyed. Our research will study the coupled biogeochemical processes that dictate the rate of TCE co-metabolism in contaminated aquifers first at the Idaho National Laboratory and then at Paducah or the Savannah River Site, where natural attenuation of TCE is occurring. We will use flow-through in situ reactors to investigate the rate of methanotrophic co-metabolism of TCE and the coupling of the responsible biological processes with the dissolved methane flux and groundwater flow velocity. We will use new approaches (e.g., stable isotope probing, enzyme activity probes, real-time reverse transcriptase polymerase chain reaction, proteomics) to assay the TCE co-metabolic rates, and interpret these rates in the context of enzyme activity, gene expression, and cellular inactivation related to intermediates of TCE co-metabolism. By determining the rate of TCE co-metabolism at different methane concentrations and groundwater flow velocities, we will derive key modeling parameters for the computational simulations that describe the attenuation, and thereby refine such models while assessing the contribution of microbial relative to other natural attenuation processes. This research will strengthen our ability to forecast the viability of MNA at DOE and other sites that are contaminated with chlorinated hydrocarbons.

  16. Biogeochemical factors affecting mercury methylation rate in two contaminated floodplain soils

    NASA Astrophysics Data System (ADS)

    Frohne, T.; Rinklebe, J.; Langer, U.; Du Laing, G.; Mothes, S.; Wennrich, R.

    2012-01-01

    An automated biogeochemical microcosm system allowing controlled variation of redox potential (EH) in soil suspensions was used to assess the effect of various factors on the mobility of mercury (Hg) as well as on the methylation of Hg in two contaminated floodplain soils with different Hg concentrations (approximately 5 mg Hg kg-1 and >30 mg Hg kg-1). The experiment was conducted under stepwise variation from reducing (approximately -350 mV at pH 5) to oxidizing conditions (approximately 600 mV at pH 5). Results of phospholipid fatty acids (PLFA) analysis indicate the occurrence of sulfate reducing bacteria (SRB) such as Desulfobacter species (10Me16:0, cy17:0, 10Me18:0, cy19:0) or Desulfovibrio species (18:2ω6,9), which are considered to promote Hg methylation. The products of the methylation process are lipophilic, highly toxic methyl mercury species such as the monomethyl mercury ion [MeHg+], which is named as MeHg here. The ln(MeHg/Hgt) ratio is assumed to reflect the net production of monomethyl mercury normalized to total dissolved Hg (Hgt) concentration. This ratio increases with rising dissolved organic carbon (DOC) to Hgt ratio (ln(DOC/Hgt) ratio) (R2 = 0.39, p<0.0001, n= 63) whereas the relation between ln(MeHg/Hgt ratio and lnDOC is weaker (R2 = 0.09; p<0.05; n = 63). In conclusion, the DOC/Hgt ratio might be a more important factor for the Hg net methylation than DOC alone in the current study. Redox variations seem to affect the biogeochemical behavior of dissolved inorganic Hg species and MeHg indirectly through related changes in DOC, sulfur cycle, and microbial community structure whereas EH and pH values, as well as concentration of dissolved Fe3+/Fe2+ and Cl- seem to play subordinate roles in Hg mobilization and methylation under our experimental conditions.

  17. Biogeochemical factors affecting mercury methylation rate in two contaminated floodplain soils

    NASA Astrophysics Data System (ADS)

    Frohne, T.; Rinklebe, J.; Langer, U.; Du Laing, G.; Mothes, S.; Wennrich, R.

    2011-09-01

    An automated biogeochemical microcosm system allowing controlled variation of redox potential (EH) in soil suspensions was used to assess the effect of various factors on the mobility of mercury (Hg) as well as on the methylation of Hg in two contaminated floodplain soils with different Hg concentrations (approximately 5 mg kg-1 Hg and >30 mg kg-1 Hg). The experiment was conducted under stepwise variation from reducing (approximately -350 mV at pH 5) to oxidizing conditions (approximately 600 mV at pH 5). Results of phospholipid fatty acids (PLFA) analysis indicate the occurrence of sulfate reducing bacteria (SRB) such as Desulfobacter species (10me16:0, cy17:0, 10me18:0, cy19:0) or Desulfovibrio species (18:2ω6,9), which are considered to promote Hg methylation. The products of the methylation process are lipophilic, highly toxic methyl mercury species such as the monomethyl mercury ion [MeHg+], which is named as MeHg here. The ln(MeHg/Hgt) ratio is assumed to reflect the net production of monomethyl mercury normalized to total dissolved Hg (Hgt) concentration. This ratio increases with rising dissolved organic carbon (DOC) to Hgt ratio (lnDOC/lnHgt ratio) (R2 = 0.39, p < 0.0001, n = 63) whereas the relation between ln(MeHg/Hgt) ratio and lnDOC is weaker (R2 = 0.09; p < 0.05; n = 63). In conclusion, the DOC/Hgt ratio might be a more important factor for the Hg net methylation than DOC alone in the current study. Redox variations seem to affect the biogeochemical behavior of dissolved inorganic Hg species and MeHg indirectly through related changes in DOC, sulfur cycle, and microbial community structure whereas E,H and pH values, as well as concentration of dissolved Fe,3+/Fe2+ and Cl- seem to play subordinate roles in Hg mobilization and methylation under our experimental conditions.

  18. South Florida wetlands ecosystem; biogeochemical processes in peat

    USGS Publications Warehouse

    Orem, William; ,

    1996-01-01

    The South Florida wetlands ecosystem is an environment of great size and ecological diversity (figs. 1 and 2). The landscape diversity and subtropical setting of this ecosystem provide a habitat for an abundance of plants and wildlife, some of which are unique to South Florida. South Florida wetlands are currently in crisis, however, due to the combined effects of agriculture, urbanization, and nearly 100 years of water management. Serious problems facing this ecosystem include (1) phosphorus contamination producing nutrient enrichment, which is causing changes in the native vegetation, (2) methylmercury contamination of fish and other wildlife, which poses a potential threat to human health, (3) changes in the natural flow of water in the region, resulting in more frequent drying of wetlands, loss of organic soils, and a reduction in freshwater flow to Florida Bay, (4) hypersalinity, massive algal blooms, and seagrass loss in parts of Florida Bay, and (5) a decrease in wildlife populations, especially those of wading birds. This U.S. Geological Survey (USGS) project focuses on the role of organic-rich sediments (peat) of South Florida wetlands in regulating the concentrations and impact of important chemical species in the environment. The cycling of carbon, nitrogen, phosphorus, and sulfur in peat is an important factor in the regulation of water quality in the South Florida wetlands ecosystem. These elements are central to many of the contamination issues facing South Florida wetlands, such as nutrient enrichment, mercury toxicity, and loss of peat. Many important chemical and biological reactions occur in peat and control the fate of chemical species in wetlands. Wetland scientists often refer to these reactions as biogeochemical processes, because they are chemical reactions usually mediated by microorganisms in a geological environment. An understanding of the biogeochemical processes in peat of South Florida wetlands will provide a basis for evaluating the

  19. Hydrological Perturbations Drive Biogeochemical Processes in Experimental Soil Columns from the Norman Landfill Site

    NASA Astrophysics Data System (ADS)

    Arora, B.; Mohanty, B. P.; McGuire, J. T.

    2010-12-01

    Fate and transport of contaminants in saturated and unsaturated zones is governed by biogeochemical processes that are complex and non-linearly coupled to each other. A fundamental understanding of the interactions between transport and reaction processes is essential to better characterize contaminant movement in the subsurface. The objectives of this study are to: i) develop quantitative relationships between hydrological (initial and boundary conditions, hydraulic conductivity ratio, and soil layering), geochemical (mineralogy, surface area, redox potential, and organic matter) and microbiological factors (MPN) that alter the biogeochemical processes, and ii) characterize the effect of hydrologic perturbations on coupled processes occurring at the column scale. The perturbations correspond to rainfall intensity, duration of wet and dry conditions, and water chemistry (pH). Soils collected from two locations with significantly different geochemistry at the Norman landfill site are used in this study. Controlled flow experiments were conducted on: i) two homogeneous soil columns, ii) a layered soil column, iii) a soil column with embedded clay lenses, and iv) a soil column with embedded clay lenses and one central macropore. Experimental observations showed enhanced biogeochemical activity at the interface of the layered and lensed columns over the texturally homogeneous soil columns. Multivariate statistical analysis showed that the most important processes were microbial reduction of Fe(III) and SO42-, and oxidation of reduced products in the columns. Modeling results from HP1 indicate least redox activity in the homogeneous sand column while the structurally heterogeneous columns utilize oxygen and nitrate from recharge as well as iron sulfide minerals already present in the columns as electron acceptors. Furthermore, the interface of the layered and lensed soil columns acts as a hotspot of biogeochemical activity due to increased transport timescale as a

  20. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    PubMed Central

    Ho, Adrian; Angel, Roey; Veraart, Annelies J.; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L. E.

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.

  1. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    PubMed Central

    Ho, Adrian; Angel, Roey; Veraart, Annelies J.; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L. E.

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. PMID:27602021

  2. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

    PubMed

    Ho, Adrian; Angel, Roey; Veraart, Annelies J; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L E

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. PMID:27602021

  3. Spatio-temporal evolution of biogeochemical processes at a landfill site

    NASA Astrophysics Data System (ADS)

    Arora, B.; Mohanty, B. P.; McGuire, J. T.

    2011-12-01

    Predictions of fate and transport of contaminants are strongly dependent on spatio-temporal variability of soil hydraulic and geochemical properties. This study focuses on time-series signatures of hydrological and geochemical properties at different locations within the Norman landfill site. Norman Landfill is a closed municipal landfill site with prevalent organic contamination. Monthly data at the site include specific conductance, δ18O, δ2H, dissolved organic carbon (DOC) and anions (chloride, sulfate, nitrate) from 1998-2006. Column scale data on chemical concentrations, redox gradients, and flow parameters are also available on daily and hydrological event (infiltration, drainage, etc.) scales. Since high-resolution datasets of contaminant concentrations are usually unavailable, Wavelet and Fourier analyses were used to infer the dominance of different biogeochemical processes at different spatio-temporal scales and to extract linkages between transport and reaction processes. Results indicate that time variability controls the progression of reactions affecting biodegradation of contaminants. Wavelet analysis suggests that iron-sulfide reduction reactions had high seasonal variability at the site, while fermentation processes dominated at the annual time scale. Findings also suggest the dominance of small spatial features such as layered interfaces and clay lenses in driving biogeochemical reactions at both column and landfill scales. A conceptual model that caters to increased understanding and remediating structurally heterogeneous variably-saturated media is developed from the study.

  4. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

    PubMed

    Ho, Adrian; Angel, Roey; Veraart, Annelies J; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L E

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.

  5. CALIBRATION OF SUBSURFACE BATCH AND REACTIVE-TRANSPORT MODELS INVOLVING COMPLEX BIOGEOCHEMICAL PROCESSES

    EPA Science Inventory

    In this study, the calibration of subsurface batch and reactive-transport models involving complex biogeochemical processes was systematically evaluated. Two hypothetical nitrate biodegradation scenarios were developed and simulated in numerical experiments to evaluate the perfor...

  6. Integrating turbulent flow, biogeochemical, and poromechanical processes in rippled coastal sediment (Invited)

    NASA Astrophysics Data System (ADS)

    Cardenas, M. B.; Cook, P. L.; Jiang, H.; Traykovski, P.

    2010-12-01

    Coastal sediments are the locus of multiple coupled processes. Turbulent flow associated with waves and currents induces porewater flow through sediment leading to fluid exchange with the water column. This porewater flow is determined by the hydraulic and elastic properties of the sediment. Porewater flow also ultimately controls biogeochemical reactions in the sediment whose rates depend on delivery of reactants and export of products. We present results from numerical modeling studies directed at integrating these processes with the goal of shedding light on these complex environments. We show how denitrification rates inside ripples are largest at intermediate permeability which represents the optimal balance of reactant delivery and anoxic conditions. It is clear that nutrient cycling and distribution within the sediment is strongly dependent on the character of the multidimensional flow field inside of sediment. More recent studies illustrate the importance of the elastic properties of the saturated sediment on modulating fluid exchange between the water column and the sediment when pressure fluctuations along the sediment-water interface occur at the millisecond scale. Pressure fluctuations occur at this temporal scale due to turbulence and associated shedding of vortices due to the ripple geometry. This suggests that biogeochemical cycling may also be affected by these high-frequency elastic effects. Future studies should be directed towards this and should take advantage of modeling tools such as those we present.

  7. Saltwater intrusion into tidal freshwater marshes alters the biogeochemical processing of organic carbon

    NASA Astrophysics Data System (ADS)

    Neubauer, S. C.; Franklin, R. B.; Berrier, D. J.

    2013-12-01

    Environmental perturbations in wetlands affect the integrated plant-microbial-soil system, causing biogeochemical responses that can manifest at local to global scales. The objective of this study was to determine how saltwater intrusion affects carbon mineralization and greenhouse gas production in coastal wetlands. Working with tidal freshwater marsh soils that had experienced ~ 3.5 yr of in situ saltwater additions, we quantified changes in soil properties, measured extracellular enzyme activity associated with organic matter breakdown, and determined potential rates of anaerobic carbon dioxide (CO2) and methane (CH4) production. Soils from the field plots treated with brackish water had lower carbon content and higher C : N ratios than soils from freshwater plots, indicating that saltwater intrusion reduced carbon availability and increased organic matter recalcitrance. This was reflected in reduced activities of enzymes associated with the hydrolysis of cellulose and the oxidation of lignin, leading to reduced rates of soil CO2 and CH4 production. The effects of long-term saltwater additions contrasted with the effects of short-term exposure to brackish water during three-day laboratory incubations, which increased rates of CO2 production but lowered rates of CH4 production. Collectively, our data suggest that the long-term effect of saltwater intrusion on soil CO2 production is indirect, mediated through the effects of elevated salinity on the quantity and quality of autochthonous organic matter inputs to the soil. In contrast, salinity, organic matter content, and enzyme activities directly influence CH4 production. Our analyses demonstrate that saltwater intrusion into tidal freshwater marshes affects the entire process of carbon mineralization, from the availability of organic carbon through its terminal metabolism to CO2 and/or CH4, and illustrate that long-term shifts in biogeochemical functioning are not necessarily consistent with short

  8. Saltwater intrusion into tidal freshwater marshes alters the biogeochemical processing of organic carbon

    NASA Astrophysics Data System (ADS)

    Neubauer, S. C.; Franklin, R. B.; Berrier, D. J.

    2013-07-01

    Environmental perturbations in wetlands affect the integrated plant-microbial-soil system, causing biogeochemical responses that can manifest at local to global scales. The objective of this study was to determine how saltwater intrusion affects carbon mineralization and greenhouse gas production in coastal wetlands. Working with tidal freshwater marsh soils that had experienced roughly 3.5 yr of in situ saltwater additions, we quantified changes in soil properties, measured extracellular enzyme activity associated with organic matter breakdown, and determined potential rates of anaerobic carbon dioxide (CO2) and methane (CH4) production. Soils from the field plots treated with brackish water had lower carbon content and higher C : N ratios than soils from freshwater plots, indicating that saltwater intrusion reduced carbon availability and increased organic matter recalcitrance. This was reflected in reduced activities of enzymes associated with the hydrolysis of cellulose and the oxidation of lignin, leading to reduced rates of soil CO2 and CH4 production. The effects of long-term saltwater additions contrasted with the effects of short-term exposure to brackish water during three-day laboratory incubations, which increased rates of CO2 production but lowered rates of CH4 production. Collectively, our data suggest that the long-term effect of saltwater intrusion on soil CO2 production is indirect, mediated through the effects of elevated salinity on the quantity and quality of autochthonous organic matter inputs to the soil. In contrast, salinity, organic matter content, and enzyme activities directly influence CH4 production. Our analyses demonstrate that saltwater intrusion into tidal freshwater marshes affects the entire process of carbon mineralization, from the availability of organic carbon through its terminal metabolism to CO2 and/or CH4, and illustrate that long-term shifts in biogeochemical functioning are not necessarily consistent with short

  9. The interaction between biogeophysical and biogeochemical processes and their feedback on permafrost soil carbon stocks

    NASA Astrophysics Data System (ADS)

    ElMasri, B.; Barman, R.; Jain, A. K.

    2013-12-01

    Our current understanding of the full suite of processes and their responses to recent warming in terrestrial high-latitudes are far from complete. While continued research on development of more detailed Earth system models (ESMs) is essential to understand the interactions and feedbacks between vegetation, soils and climate change in the Northern high latitudes (NHL), one of the major challenges is the treatment of the biophysical and biogeochemical processes and feedback in the ESM and their impact on soil organic carbon. We used a land surface model, the Integrated Science Assessment Model (ISAM), which coupled carbon-nitrogen biogeochemical and energy and hydrology biogeophysical processes, to investigate the effects of feedbacks between the biogeochemical and biogeophysical processes on the model estimated soil organic carbon (SOC) for the NHL permafrost region. We not only focused on recent improvement in the ISAM biogeophysical processes that are deemed important for the high latitude soils/snow; such as deep soil column, modulation of soil thermal and hydrological properties, wind compaction of snow, and depth hoar formation; on permafrost SOC, but also biogeochemical processes; such as dynamic phenology and root distribution, litter carbon decomposition rates and nitrogen amount remaining; on soil biogeochemistry. We selected multiple sites representative of different high latitude biomes to calibrate and evaluate the model. We then carried out several ISAM model simulations to study the effects of feedbacks between biogeochemical and biogeophysical processes on SOC. Our model analysis shows that including the biogeophysical processes alone could increase modeled Northern high-latitude permafrost carbon by about 30% compared to measurements. Accounting for the biogeochmical processes further improve the NHL soil carbon. This study demonstrates that improvements in biogeophysical or biogeochemical processes alone does not help to improve the modeled SOC

  10. Biogeochemical Processes Controlling Microbial Reductive Precipitation of Radionuclides

    SciTech Connect

    Fredrickson, James K.; Brooks, Scott C.

    2004-03-17

    This project is focused on elucidating the principal biogeochemical reactions that govern the concentrations, chemical speciation, and distribution of the redox sensitive contaminants uranium (U) and technetium (Tc) between the aqueous and solid phases. The research is designed to provide new insights into the under-explored areas of competing geochemical and microbiological oxidation-reduction reactions that govern the fate and transport of redox sensitive contaminants and to generate fundamental scientific understanding of the identity and stoichiometry of competing microbial reduction and geochemical oxidation reactions. These goals and objectives are met through a series of hypothesis-driven tasks that focus on (1) the use of well-characterized microorganisms and synthetic and natural mineral oxidants, (2) advanced spectroscopic and microscopic techniques to monitor redox transformations of U and Tc, and (3) the use of flow-through experiments to more closely approximate groundwater environments. The results are providing an improved understanding and predictive capability of the mechanisms that govern the redox dynamics of radionuclides in subsurface environments. For purposes of this poster, the results are divided into three sections: (1) influence of Ca on U(VI) bioreduction; (2) localization of biogenic UO{sub 2} and TcO{sub 2}; and (3) reactivity of Mn(III/IV) oxides.

  11. Biogeochemical cycles of Chernobyl-born radionuclides in the contaminated forest ecosystems: long-term dynamics of the migration processes

    NASA Astrophysics Data System (ADS)

    Shcheglov, Alexey; Tsvetnova, Ol'ga; Klyashtorin, Alexey

    2013-04-01

    Biogeochemical migration is a dominant factor of the radionuclide transport through the biosphere. In the early XX century, V.I. Vernadskii, a Russian scientist known, noted about a special role living things play in transport and accumulation of natural radionuclide in various environments. The role of biogeochemical processes in migration and redistribution of technogenic radionuclides is not less important. In Russia, V. M. Klechkovskii and N.V. Timofeev-Ressovskii showed some important biogeochemical aspects of radionuclide migration by the example of global fallout and Kyshtym accident. Their followers, R.M. Alexakhin, M.A. Naryshkin, N.V. Kulikov, F.A. Tikhomirov, E.B. Tyuryukanova, and others also contributed a lot to biogeochemistry of radionuclides. In the post-Chernobyl period, this area of knowledge received a lot of data that allowed building the radioactive element balance and flux estimation in various biogeochemical cycles [Shcheglov et al., 1999]. Regrettably, many of recent radioecological studies are only focused on specific radionuclide fluxes or pursue some applied tasks, missing the holistic approach. Most of the studies consider biogeochemical fluxes of radioactive isotopes in terms of either dose estimation or radionuclide migration rates in various food chains. However, to get a comprehensive picture and develop a reliable forecast of environmental, ecological, and social consequences of radioactive pollution in a vast contaminated area, it is necessary to investigate all the radionuclide fluxes associated with the biogeochemical cycles in affected ecosystems. We believe such an integrated approach would be useful to study long-term environmental consequences of the Fukushima accident as well. In our long-term research, we tried to characterize the flux dynamics of the Chernobyl-born radionuclides in the contaminated forest ecosystems and landscapes as a part of the integrated biogeochemical process. Our field studies were started in June of

  12. The Interactions between Biogeophysical and Biogeochemical Processes and their Feedbacks on Permafrost Soil Carbon Stocks

    NASA Astrophysics Data System (ADS)

    Jain, A. K.; El Masri, B.; Barman, R.; Shu, S.; Song, Y.

    2014-12-01

    One of the major challenges in more detailed Earth system models (ESMs) is the treatment of the biophysical and biogeochemical processes and feedbacks and their impact on soil organic carbon in the Northern high latitudes (NHL). We use a land surface model, the Integrated Science Assessment Model (ISAM) to investigate the effects of feedbacks between the biogeochemical and biogeophysical processes on the model estimated soil organic carbon (SOC) for the NHL permafrost region. We not only focus on recent model improvements in the biogeophysical processes that are deemed important for the high latitude soils/snow; such as deep soil column, modulation of soil thermal and hydrological properties, wind compaction of snow, and depth hoar formation; on permafrost SOC; but also biogeochemical processes; such as dynamic phenology and root distribution, litter carbon decomposition rates and nitrogen amount remaining; on soil biogeochemistry. We select multiple sites to evaluate the model. We then carried out several model simulations to study the effects of feedbacks between biogeochemical and biogeophysical processes on SOC. Our model analysis shows that including the biogeophysical processes alone could increase modeled NHL permafrost carbon by about 30% compared to measurements. Accounting for the biogeochmical processes further improve the NHL soil carbon.

  13. Isotope biogeochemical assessment of natural biodegradation processes in open cast pit mining landscapes

    NASA Astrophysics Data System (ADS)

    Jeschke, Christina; Knöller, Kay; Koschorreck, Matthias; Ussath, Maria; Hoth, Nils

    2014-05-01

    laboratory experiments, we tested reactive materials that may speed up the process of bacterial sulfate reduction. In in-situ experiments, we quantified nitrification rates. Based on the results, we are able to suggest promising technical measures that enhance natural attenuation processes at mine dump site and in mining lakes. The natural water cycle in lignite mining landscapes is heavily impacted by human activities. Basically, nature is capable of cleaning itself to a certain extent after mining activities stopped. However, it is our responsibility to support biogeochemical processes to make them more efficient and more sustainable. Isotopic monitoring proved to be an excellent tool for assessing the relevance and performance of different re-cultivation measures for a positive long-term development of the water quality in large-scale aquatic systems affected by the impact of lignite mining.

  14. Do antibiotics have environmental side-effects? Impact of synthetic antibiotics on biogeochemical processes.

    PubMed

    Roose-Amsaleg, Céline; Laverman, Anniet M

    2016-03-01

    Antibiotic use in the early 1900 vastly improved human health but at the same time started an arms race of antibiotic resistance. The widespread use of antibiotics has resulted in ubiquitous trace concentrations of many antibiotics in most environments. Little is known about the impact of these antibiotics on microbial processes or "non-target" organisms. This mini-review summarizes our knowledge of the effect of synthetically produced antibiotics on microorganisms involved in biogeochemical cycling. We found only 31 articles that dealt with the effects of antibiotics on such processes in soil, sediment, or freshwater. We compare the processes, antibiotics, concentration range, source, environment, and experimental approach of these studies. Examining the effects of antibiotics on biogeochemical processes should involve environmentally relevant concentrations (instead of therapeutic), chronic exposure (versus acute), and monitoring of the administered antibiotics. Furthermore, the lack of standardized tests hinders generalizations regarding the effects of antibiotics on biogeochemical processes. We investigated the effects of antibiotics on biogeochemical N cycling, specifically nitrification, denitrification, and anammox. We found that environmentally relevant concentrations of fluoroquinolones and sulfonamides could partially inhibit denitrification. So far, the only documented effects of antibiotic inhibitions were at therapeutic doses on anammox activities. The most studied and inhibited was nitrification (25-100 %) mainly at therapeutic doses and rarely environmentally relevant. We recommend that firm conclusions regarding inhibition of antibiotics at environmentally relevant concentrations remain difficult due to the lack of studies testing low concentrations at chronic exposure. There is thus a need to test the effects of these environmental concentrations on biogeochemical processes to further establish the possible effects on ecosystem functioning.

  15. Dynamic interactions of ecohydrological and biogeochemical processes in water-stressed environments

    NASA Astrophysics Data System (ADS)

    Wang, L.; Manzoni, S.; Ravi, S.; Riveros-Iregui, D. A.; Caylor, K. K.

    2015-12-01

    Water is the essential reactant, catalyst, or medium for many biogeochemical reactions and flows. The coupling between hydrological and biogeochemical processes is particularly evident in drylands, but also in areas with strong seasonal precipitation patterns or in mesic systems during droughts. Moreover, this coupling is apparent at all levels in the ecosystems - from soil microbial cells to whole plants to landscapes. A holistic approach is essential to fully understand function and processes in water-limited ecosystems and to predict their responses to environmental change. We examine some of the mechanisms responsible for microbial and vegetation responses to moisture inputs in water-limited ecosystems through a synthesis of existing literature and we also summarize the modeling advances in addressing these interactions. This paper focuses on three opportunities to advance coupled hydrological and biogeochemical research: (1) improved quantitative understanding of mechanisms linking hydrological and biogeochemical variations in drylands, (2) experimental and theoretical approaches that describe linkages between hydrology and biogeochemistry (particularly across scales), and (3) the use of these tools and insights to address critical dryland issues of societal relevance.

  16. Caught in the flux net: disentangling error, uncertainty, heterogeneity, and spatial process in biogeochemical scaling

    NASA Astrophysics Data System (ADS)

    Dietze, M.

    2014-12-01

    Attempts to link observations across multiple scales, and in particular the problem of scaling up fine-scale observations to landscape and regional process, faces numerous theoretical, computational, and statistical challenges. This talk aims to link theoretical advances in the scaling of biotic heterogeneity, abiotic heterogeneity, and contagious disturbance with statistical advances for linking observations that integrate over different scales. Critical to this goal is the need to partition sources of uncertainty and variability. In particular, the variance you can calculate most readily is rarely the most important or relevant one to quantify. In community ecology, hierarchical Bayes (HB) latent-variable models that separate true variability in ecosystem processes from observation errors have challenged long-standing theory surrounding the maintenance of biodiversity, yet application of such approaches to regional-scale biogeochemical processes is just beginning. A special case of such models, focused on the change of support problem, deal specifically with linking observations that integrate over different spatial and temporal scales. Occurring in parallel with these statistical advances have been the development of new theories for the spatially-implicit scaling of biotic and abiotic heterogeneity, as well as contagious disturbances such as fire and pathogens, and the incorporation of such approaches into process-based ecosystem models. Such approaches upscale by integrating the probability distributions of system heterogeneity over the functional response of the ecosystem to such heterogeneity. We demonstrate that this approach can also be downscaled by conditioning on incomplete partial observation at a local scale, and can have lower uncertainty than brute-force spatially-explicit approaches. We also extend such approaches from integrating over observed heterogeneities to integrating the latent, high-dimensional variability in HB models. Finally, there is a

  17. Reservoir and contaminated sediments impacts in high-Andean environments: Morphodynamic interactions with biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Escauriaza, C. R.; Contreras, M. T.; Müllendorff, D. A.; Pasten, P.; Pizarro, G. E.

    2014-12-01

    Rapid changes due to anthropic interventions in high-altitude environments, such as the Altiplano region in South America, require new approaches to understand the connections between physical and biogeochemical processes. Alterations of the water quality linked to the river morphology can affect the ecosystems and human development in the long-term. The future construction of a reservoir in the Lluta river, located in northern Chile, will change the spatial distribution of arsenic-rich sediments, which can have significant effects on the lower parts of the watershed. In this investigation we develop a coupled numerical model to predict and evaluate the interactions between morphodynamic changes in the Lluta reservoir, and conditions that can potentially desorb arsenic from the sediments. Assuming that contaminants are mobilized under anaerobic conditions, we calculate the oxygen concentration within the sediments to study the interactions of the delta progradation with the potential arsenic release. This work provides a framework for future studies aimed to analyze the complex connections between morphodynamics and water quality, when contaminant-rich sediments accumulate in a reservoir. The tool can also help to design effective risk management and remediation strategies in these extreme environments. Research has been supported by Fondecyt grant 1130940 and CONICYT/FONDAP Grant 15110017

  18. Biogeochemical processes driving mercury cycling in estuarine ecosystems

    NASA Astrophysics Data System (ADS)

    Schartup, A. T.

    2015-12-01

    Mercury (Hg) is a naturally occurring element that has been enriched in the environment through human activities, particularly in the coastal zone. Bioaccumulation of methylmercury (MeHg) in marine fishposes health risks for fish-consuming populations and is a worldwide health concern. A broader understanding of major environmental processes controlling Hg cycling and MeHg production and bioaccumulation in estuaries is therefore needed. Recent fieldwork and modeling show diverse sources of MeHg production in estuaries. We present geochemical modeling results for Hg and MeHg acrossmultiple estuaries with contrasting physical, chemical and biological characteristics. We report new measurements of water column and sediment mercury speciation and methylation data from the subarctic (Lake Melville, Labrador Canada) and temperate latitudes (Long Island Sound, Delaware Bay, Chesapeake Bay). We find that benthic sediment is a relatively small source of MeHg to the water column in all systems. Water column methylation drives MeHg levels in Lake Melville, whereas in more impacted shallow systems such as Chesapeake Bay and Long Island Sound, external inputs and sediment resuspension are more dominant. All systems are a net source of MeHg to the ocean through tidal exchange. In light of these inter-system differences, we will evaluate timescales of coastal ecosystem responses to changes in Hg loading that can help predict potential responses to future perturbations.

  19. Isotopic Tracers for Biogeochemical Processes and Contaminant Transport: Hanford, Washington

    SciTech Connect

    Donald J. DePaolo; John N. Christensen; Mark E. Conrad; and P. Evan Dresel

    2007-04-19

    Our goal is to use isotopic measurements to understand how contaminants are introduced to and stored in the vadose zone, and what processes control migration from the vadose zone to groundwater and then to surface water. We have been using the Hanford Site in south-central Washington as our field laboratory, and our investigations are often stimulated by observations made as part of the groundwater monitoring program and vadose zone characterization activities. Understanding the transport of contaminants at Hanford is difficult due to the presence of multiple potential sources within small areas, the long history of activities, the range of disposal methods, and the continuing evolution of the hydrological system. Observations often do not conform to simple models, and cannot be adequately understood with standard characterization approaches, even though the characterization activities are quite extensive. One of our objectives is to test the value of adding isotopic techniques to the characterization program, which has the immediate potential benefit of addressing specific remediation issues, but more importantly, it allows us to study fundamental processes at the scale and in the medium where they need to be understood. Here we focus on two recent studies at the waste management area (WMA) T-TX-TY, which relate to the sources and transport histories of vadose zone and groundwater contamination and contaminant fluid-sediment interaction. The WMA-T and WMA-TX-TY tank farms are located within the 200 West Area in the central portion of the Hanford Site (Fig. 2). They present a complicated picture of mixed groundwater plumes of nitrate, {sup 99}Tc, Cr{sup 6+}, carbon tetrachloride, etc. and multiple potential vadose zone sources such as tank leaks and disposal cribs (Fig. 3). To access potential vadose zone sources, we analyzed samples from cores C3832 near tank TX-104 and from C4104 near tank T-106. Tank T-106 was involved in a major event in 1973 in which 435,000 L

  20. Evidence of biogeochemical processes in iron duricrust formation

    NASA Astrophysics Data System (ADS)

    Levett, Alan; Gagen, Emma; Shuster, Jeremiah; Rintoul, Llew; Tobin, Mark; Vongsvivut, Jitraporn; Bambery, Keith; Vasconcelos, Paulo; Southam, Gordon

    2016-11-01

    Canga is a moderately hard iron-rich duricrust primarily composed of goethite as a result of the weathering of banded iron formations. Canga duricrusts lack a well-developed soil profile and consequently form an innate association with rupestrian plants that may become ferruginised, contributing to canga possessing macroscopic biological features. Examination of polished canga using a field emission scanning electron microscope (FE-SEM) revealed the biological textures associated with canga extended to the sub-millimetre scale in petrographic sections and polished blocks. Laminae that formed by abiotic processes and regions where goethite cements were formed in association with microorganisms were observed in canga. Biological cycling of iron within canga has resulted in two distinct forms of microbial fossilisation: permineralisation of multispecies biofilms and mineralisation of cell envelopes. Goethite permineralised biofilms frequently formed around goethite-rich kaolinite grains in close proximity to goethite bands and were composed of micrometre-scale rod-shaped, cocci and filamentous microfossils. In contrast, the cell envelopes immobilised by authigenic iron oxides were primarily of rod-shaped microorganisms, were not permineralised and occurred in pore spaces within canga. Complete mineralisation of intact rod-shaped casts and the absence of permineralisation suggested mineralised cell envelopes may represent fossilised iron-oxidising bacteria in the canga ecosystem. Replication of these iron-oxidising bacteria appeared to infill the porous regions within canga. Synchrotron-based Fourier transform infrared (FTIR) microspectroscopy demonstrated that organic biomarkers were poorly preserved with only weak bands indicative of aliphatic methylene (CH2) associated with permineralised microbial biofilms. High resolution imaging of microbial fossils in canga that had been etched with oxalic acid supported the poor preservation of organic biomarkers within canga

  1. Biogeochemical Processes In Ethanol Stimulated Uranium Contaminated Subsurface Sediments

    SciTech Connect

    Mohanty, Santosh R.; Kollah, Bharati; Hedrick, David B.; Peacock, Aaron D.; Kukkadapu, Ravi K.; Roden, Eric E.

    2008-06-15

    A laboratory incubation experiment was conducted with uranium contaminated subsurface sediment to assess the geochemical and microbial community response to ethanol amendment. A classical sequence of TEAPs was observed in ethanol-amended slurries, with NO3- reduction, Fe(III) reduction, SO4 2- reduction, and CH4 production proceeding in sequence until all of the added 13C-ethanol (9 mM) was consumed. Approximately 60% of the U(VI) content of the sediment was reduced during the period of Fe(III) reduction. No additional U(VI) reduction took place during the sulfate-reducing and methanogenic phases of the experiment. Only gradual reduction of NO3 -, and no reduction of U(VI), took place in ethanol-free slurries. Stimulation of additional Fe(III) or SO4 2- reduction in the ethanol-amended slurries failed to promote further U(VI) reduction. Reverse transcribed 16S rRNA clone libraries revealed major increases in the abundance of organisms related to Dechloromonas, Geobacter, and Oxalobacter in the ethanolamended slurries. PLFAs indicative of Geobacter showed a distinct increase in the amended slurries, and analysis of PLFA 13C/12C ratios confirmed the incorporation of ethanol into these PLFAs. A increase in the abundance of 13C-labeled PLFAs indicative of Desulfobacter, Desulfotomaculum, and Desulfovibrio took place during the brief period of sulfate reduction which followed the Fe(III) reduction phase. Our results show that major redox processes in ethanol-amended sediments can be reliably interpreted in terms of standard conceptual models of TEAPs in sediments. However, the redox speciation of uranium is complex and cannot be explained based on simplified thermodynamic considerations.

  2. Geo- and biogeochemical processes in a heliothermal hypersaline lake

    NASA Astrophysics Data System (ADS)

    Zachara, John M.; Moran, James J.; Resch, Charles T.; Lindemann, Stephen R.; Felmy, Andrew R.; Bowden, Mark E.; Cory, Alexandra B.; Fredrickson, James K.

    2016-05-01

    precipitation in the mixolimnion and metalimnion, but the absence of calcareous sediments at depth suggests dissolution and recycling during winter months. Dissolved carbon concentrations [dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC)] increased with depth, reaching ∼0.04 mol/L at the metalimnion-monimolimnion boundary. DIC concentrations were seasonally variable in the mixolimnion and metalimnion, and were influenced by calcium carbonate precipitation. DOC concentrations mimicked those of conservative salts (e.g., Na+-Cl-) in the mixolimnion and metalimnion, but decreased in the monimolimnion where mass loss by anaerobic microbial processes is implied. Biogenic reduced solutes originating in monimolimnion (H2S and CH4) were biologically oxidized in the metalimnion as they were not observed in more shallow lake waters. Multi-year solute inventory calculations indicated that Hot Lake is a stable, albeit seasonally and annually dynamic feature, with inorganic solutes cycled between lake waters and sediments depending on annual recharge, temperature, and lake water dilution state. With its extreme geochemical and thermal regime, Hot Lake functions as analog of early earth and extraterrestrial life environments.

  3. High resolution modelling of the biogeochemical processes in the eutrophic Loire River (France)

    NASA Astrophysics Data System (ADS)

    Minaudo, Camille; Moatar, Florentina; Curie, Florence; Gassama, Nathalie; Billen, Gilles

    2016-04-01

    A biogeochemical model was developed, coupling a physically based water temperature model (T-NET) with a semi-mechanistic biogeochemical model (RIVE, used in ProSe and Riverstrahler models) in order to assess at a fine temporal and spatial resolution the biogeochemical processes in the eutrophic Middle Loire hydrosystem (≈10 000 km², 3361 river segments). The code itself allows parallelized computing, which decreased greatly the calculation time (5 hours for simulating 3 years hourly). We conducted a daily survey during the period 2012-2014 at 2 sampling stations located in the Middle Loire of nutrients, chlorophyll pigments, phytoplankton and physic-chemical variables. This database was used as both input data (upstream Loire boundary) and validation data of the model (basin outlet). Diffuse and non-point sources were assessed based on a land cover analysis and WWTP datasets. The results appeared very sensible to the coefficients governing the dynamic of suspended solids and of phosphorus (sorption/desorption processes) within the model and some parameters needed to be estimated numerically. Both the Lagrangian point of view and fluxes budgets at the seasonal and event-based scale evidenced the biogeochemical functioning of the Loire River. Low discharge levels set up favorable physical conditions for phytoplankton growth (long water travel time, limited water depth, suspended particles sedimentation). Conversely, higher discharge levels highly limited the phytoplankton biomass (dilution of the colony, washing-out, limited travel time, remobilization of suspended sediments increasing turbidity), and most biogeochemical species were basically transferred downstream. When hydrological conditions remained favorable for phytoplankton development, P-availability was the critical factor. However, the model evidenced that most of the P in summer was recycled within the water body: on one hand it was assimilated by the algae biomass, and on the other hand it was

  4. Biogeochemical hotspots within forested landscapes: quantifying the functional role of vernal pools in ecosystem processes

    NASA Astrophysics Data System (ADS)

    Capps, K. A.; Rancatti, R.; Calhoun, A.; Hunter, M.

    2013-12-01

    Biogeochemical hotspots are characterized as small areas within a landscape matrix that show comparably high chemical reaction rates relative to surrounding areas. For small, natural features to generate biogeochemical hotspots within a landscape, their contribution to nutrient dynamics must be significant relative to nutrient demand of the surrounding landscape. In northeastern forests in the US, vernal pools are abundant, small features that typically fill in spring with snow melt and precipitation and dry by the end of the summer. Ephemeral flooding alters soil moisture and the depth of the oxic/anoxic boundary in the soil, which may affect leaf-litter decomposition rates and nutrient dynamics including denitrification. Additionally, pool-breeding organisms may influence nutrient dynamics via consumer-driven nutrient remineralization. We studied the effects of vernal pools on rates of leaf-litter decomposition and denitrification in forested habitats in Maine. Our results indicate leaf-litter decomposition and denitrification rates in submerged habitats of vernal pools were greater than in upland forest habitat. Our data also suggest pool-breeding organisms, such as wood frogs, may play an important role in nutrient dynamics within vernal pools. Together, the results suggest vernal pools may function as biogeochemical hotspots within forested landscapes.

  5. Potential effects of climate change and variability on watershed biogeochemical processes and water quality in Northeast Asia.

    PubMed

    Park, Ji-Hyung; Duan, Lei; Kim, Bomchul; Mitchell, Myron J; Shibata, Hideaki

    2010-02-01

    An overview is provided of the potential effects of climate change on the watershed biogeochemical processes and surface water quality in mountainous watersheds of Northeast (NE) Asia that provide drinking water supplies for large populations. We address major 'local' issues with the case studies conducted at three watersheds along a latitudinal gradient going from northern Japan through the central Korean Peninsula and ending in southern China. Winter snow regimes and ground snowpack dynamics play a crucial role in many ecological and biogeochemical processes in the mountainous watersheds across northern Japan. A warmer winter with less snowfall, as has been projected for northern Japan, will alter the accumulation and melting of snowpacks and affect hydro-biogeochemical processes linking soil processes to surface water quality. Soils on steep hillslopes and rich in base cations have been shown to have distinct patterns in buffering acidic inputs during snowmelt. Alteration of soil microbial processes in response to more frequent freeze-thaw cycles under thinner snowpacks may increase nutrient leaching to stream waters. The amount and intensity of summer monsoon rainfalls have been increasing in Korea over recent decades. More frequent extreme rainfall events have resulted in large watershed export of sediments and nutrients from agricultural lands on steep hillslopes converted from forests. Surface water siltation caused by terrestrial export of sediments from these steep hillslopes is emerging as a new challenge for water quality management due to detrimental effects on water quality. Climatic predictions in upcoming decades for southern China include lower precipitation with large year-to-year variations. The results from a four-year intensive study at a forested watershed in Chongquing province showed that acidity and the concentrations of sulfate and nitrate in soil and surface waters were generally lower in the years with lower precipitation, suggesting year

  6. Potential effects of climate change and variability on watershed biogeochemical processes and water quality in Northeast Asia.

    PubMed

    Park, Ji-Hyung; Duan, Lei; Kim, Bomchul; Mitchell, Myron J; Shibata, Hideaki

    2010-02-01

    An overview is provided of the potential effects of climate change on the watershed biogeochemical processes and surface water quality in mountainous watersheds of Northeast (NE) Asia that provide drinking water supplies for large populations. We address major 'local' issues with the case studies conducted at three watersheds along a latitudinal gradient going from northern Japan through the central Korean Peninsula and ending in southern China. Winter snow regimes and ground snowpack dynamics play a crucial role in many ecological and biogeochemical processes in the mountainous watersheds across northern Japan. A warmer winter with less snowfall, as has been projected for northern Japan, will alter the accumulation and melting of snowpacks and affect hydro-biogeochemical processes linking soil processes to surface water quality. Soils on steep hillslopes and rich in base cations have been shown to have distinct patterns in buffering acidic inputs during snowmelt. Alteration of soil microbial processes in response to more frequent freeze-thaw cycles under thinner snowpacks may increase nutrient leaching to stream waters. The amount and intensity of summer monsoon rainfalls have been increasing in Korea over recent decades. More frequent extreme rainfall events have resulted in large watershed export of sediments and nutrients from agricultural lands on steep hillslopes converted from forests. Surface water siltation caused by terrestrial export of sediments from these steep hillslopes is emerging as a new challenge for water quality management due to detrimental effects on water quality. Climatic predictions in upcoming decades for southern China include lower precipitation with large year-to-year variations. The results from a four-year intensive study at a forested watershed in Chongquing province showed that acidity and the concentrations of sulfate and nitrate in soil and surface waters were generally lower in the years with lower precipitation, suggesting year

  7. Significant differences in biogeochemical processes between a glaciated and a permafrost dominated catchment

    NASA Astrophysics Data System (ADS)

    Hindshaw, Ruth; Heaton, Tim; Boyd, Eric; Lang, Susan; Tipper, Ed

    2014-05-01

    It is increasingly recognised that microbially mediated processes have a significant impact on chemical fluxes from glaciated catchments. One important reaction is the oxidation of pyrite since the production of sulphuric acid facilitates the dissolution of minerals without the need for acidity generated by dissolved atmospheric CO2. Thus weathering processes can still continue even when isolated from the atmosphere, as is thought to occur under large ice masses. However, as a glacier melts, it is expected that the microbial community will change with knock-on effects on the stream water chemistry. Understanding the difference in solute generation processes between glaciated and un-glaciated terrain is key to understanding how glacial-interglacial cycles affect atmospheric CO2 consumption by chemical weathering. In order to investigate whether biogeochemical processes differ between glaciated and un-glaciated terrain we collected stream water samples from two small catchments (each approximately 3 km2) in Svalbard. One catchment is glaciated and the other catchment is un-glaciated but is affected by permafrost and a seasonal snow-pack. The two catchments are situated next to each other with identical bedrock (shale with minor siltstone and sandstone). The proximity of the catchments to each other ensures that meteorological variables such as temperature and precipitation are very similar. Sampling was conducted early in the melt-season when there was still significant snow-cover and in mid-summer when most of the seasonal snow-pack had melted. The water samples were analysed for δ34S-SO4, δ18O-SO4, δ18O-H2O, δ13C-DIC and δ13C-DOC, together with major anions and cations. Despite the nominally identical lithology, there were significant differences in the stream water chemistry between the two catchments. For example, sulphate was the dominant anion in the un-glaciated catchment whereas bicarbonate was the dominant anion in the glaciated catchment. Pyrite

  8. Cyclic biogeochemical processes and nitrogen fate beneath a subtropical stormwater infiltration basin

    USGS Publications Warehouse

    O'Reilly, Andrew M.; Chang, Ni-Bin; Wanielista, Martin P.

    2012-01-01

    A stormwater infiltration basin in north–central Florida, USA, was monitored from 2007 through 2008 to identify subsurface biogeochemical processes, with emphasis on N cycling, under the highly variable hydrologic conditions common in humid, subtropical climates. Cyclic variations in biogeochemical processes generally coincided with wet and dry hydrologic conditions. Oxidizing conditions in the subsurface persisted for about one month or less at the beginning of wet periods with dissolved O2 and NO3- showing similar temporal patterns. Reducing conditions in the subsurface evolved during prolonged flooding of the basin. At about the same time O2 and NO3- reduction concluded, Mn, Fe and SO42- reduction began, with the onset of methanogenesis one month later. Reducing conditions persisted up to six months, continuing into subsequent dry periods until the next major oxidizing infiltration event. Evidence of denitrification in shallow groundwater at the site is supported by median NO3-–N less than 0.016 mg L-1, excess N2 up to 3 mg L-1 progressively enriched in δ15N during prolonged basin flooding, and isotopically heavy δ15N and δ18O of NO3- (up to 25‰ and 15‰, respectively). Isotopic enrichment of newly infiltrated stormwater suggests denitrification was partially completed within two days. Soil and water chemistry data suggest that a biogeochemically active zone exists in the upper 1.4 m of soil, where organic carbon was the likely electron donor supplied by organic matter in soil solids or dissolved in infiltrating stormwater. The cyclic nature of reducing conditions effectively controlled the N cycle, switching N fate beneath the basin from NO3- leaching to reduction in the shallow saturated zone. Results can inform design of functionalized soil amendments that could replace the native soil in a stormwater infiltration basin and mitigate potential NO3- leaching to groundwater by replicating the biogeochemical conditions under the observed basin.

  9. Cyclic biogeochemical processes and nitrogen fate beneath a subtropical stormwater infiltration basin.

    PubMed

    O'Reilly, Andrew M; Chang, Ni-Bin; Wanielista, Martin P

    2012-05-15

    A stormwater infiltration basin in north-central Florida, USA, was monitored from 2007 through 2008 to identify subsurface biogeochemical processes, with emphasis on N cycling, under the highly variable hydrologic conditions common in humid, subtropical climates. Cyclic variations in biogeochemical processes generally coincided with wet and dry hydrologic conditions. Oxidizing conditions in the subsurface persisted for about one month or less at the beginning of wet periods with dissolved O(2) and NO(3)(-) showing similar temporal patterns. Reducing conditions in the subsurface evolved during prolonged flooding of the basin. At about the same time O(2) and NO(3)(-) reduction concluded, Mn, Fe and SO(4)(2-) reduction began, with the onset of methanogenesis one month later. Reducing conditions persisted up to six months, continuing into subsequent dry periods until the next major oxidizing infiltration event. Evidence of denitrification in shallow groundwater at the site is supported by median NO(3)(-)-N less than 0.016 mg L(-1), excess N(2) up to 3 mg L(-1) progressively enriched in δ(15)N during prolonged basin flooding, and isotopically heavy δ(15)N and δ(18)O of NO(3)(-) (up to 25‰ and 15‰, respectively). Isotopic enrichment of newly infiltrated stormwater suggests denitrification was partially completed within two days. Soil and water chemistry data suggest that a biogeochemically active zone exists in the upper 1.4m of soil, where organic carbon was the likely electron donor supplied by organic matter in soil solids or dissolved in infiltrating stormwater. The cyclic nature of reducing conditions effectively controlled the N cycle, switching N fate beneath the basin from NO(3)(-) leaching to reduction in the shallow saturated zone. Results can inform design of functionalized soil amendments that could replace the native soil in a stormwater infiltration basin and mitigate potential NO(3)(-) leaching to groundwater by replicating the biogeochemical

  10. Characterization of eco-hydraulic habitats for examining biogeochemical processes in rivers

    NASA Astrophysics Data System (ADS)

    McPhillips, L. E.; O'Connor, B. L.; Harvey, J. W.

    2009-12-01

    Spatial variability in biogeochemical reaction rates in streams is often attributed to sediment characteristics such as particle size, organic material content, and biota attached to or embedded within the sediments. Also important in controlling biogeochemical reaction rates are hydraulic conditions, which influence mass transfer of reactants from the stream to the bed, as well as hyporheic exchange within near-surface sediments. This combination of physical and ecological variables has the potential to create habitats that are unique not only in sediment texture but also in their biogeochemical processes and metabolism rates. In this study, we examine the two-dimensional (2D) variability of these habitats in an agricultural river in central Iowa. The streambed substratum was assessed using a grid-based survey identifying dominant particle size classes, as well as aerial coverage of green algae, benthic organic material, and coarse woody debris. Hydraulic conditions were quantified using a calibrated 2D model, and hyporheic exchange was assessed using a scaling relationship based on sediment and hydraulic characteristics. Point-metabolism rates were inferred from measured sediment dissolved oxygen profiles using an effective diffusion model and compared to traditional whole-stream measurements of metabolism. The 185 m study reach had contrasting geomorphologic and hydraulic characteristics in the upstream and downstream portions of an otherwise relatively straight run of a meandering river. The upstream portion contained a large central gravel bar (50 m in length) flanked by riffle-run segments and the downstream portion contained a deeper, fairly uniform channel cross-section. While relatively high flow velocities and gravel sediments were characteristic of the study river, the upstream island bar separated channels that differed with sandy gravels on one side and cobbley gravels on the other. Additionally, green algae was almost exclusively found in riffle

  11. Fungal production of citric and oxalic acid: importance in metal speciation, physiology and biogeochemical processes.

    PubMed

    Gadd, G M

    1999-01-01

    The production of organic acids by fungi has profound implications for metal speciation, physiology and biogeochemical cycles. Biosynthesis of oxalic acid from glucose occurs by hydrolysis of oxaloacetate to oxalate and acetate catalysed by cytosolic oxaloacetase, whereas on citric acid, oxalate production occurs by means of glyoxylate oxidation. Citric acid is an intermediate in the tricarboxylic acid cycle, with metals greatly influencing biosynthesis: growth limiting concentrations of Mn, Fe and Zn are important for high yields. The metal-complexing properties of these organic acids assist both essential metal and anionic (e.g. phosphate) nutrition of fungi, other microbes and plants, and determine metal speciation and mobility in the environment, including transfer between terrestrial and aquatic habitats, biocorrosion and weathering. Metal solubilization processes are also of potential for metal recovery and reclamation from contaminated solid wastes, soils and low-grade ores. Such 'heterotrophic leaching' can occur by several mechanisms but organic acids occupy a central position in the overall process, supplying both protons and a metal-complexing organic acid anion. Most simple metal oxalates [except those of alkali metals, Fe(III) and Al] are sparingly soluble and precipitate as crystalline or amorphous solids. Calcium oxalate is the most important manifestation of this in the environment and, in a variety of crystalline structures, is ubiquitously associated with free-living, plant symbiotic and pathogenic fungi. The main forms are the monohydrate (whewellite) and the dihydrate (weddelite) and their formation is of significance in biomineralization, since they affect nutritional heterogeneity in soil, especially Ca, P, K and Al cycling. The formation of insoluble toxic metal oxalates, e.g. of Cu, may confer tolerance and ensure survival in contaminated environments. In semi-arid environments, calcium oxalate formation is important in the formation and

  12. Southern Sierra Critical Zone Observatory: integrating water cycle and biogeochemical processes across the rain-snow transition

    NASA Astrophysics Data System (ADS)

    Bales, R.; Boyer, B.; Conklin, M.; Goulden, M.; Hopmans, J.; Hunsaker, C.; Johnson, D.; Kirchner, J.; Tague, C.

    2007-12-01

    The Southern Sierra Critical Zone Observatory (CZO) is establishing a rain-snow transition research platform for research by investigators from multiple disciplines and a research program aimed at yielding general knowledge and tools for understanding the interactions between water, atmosphere, ecosystems and landforms in the critical zone. A primary, overarching goal is to understand how critical zone processes control fluxes and stores of water across the landscape, and how the water cycle modulates (bio)geochemical, biological, geomorphological and soil processes in the critical zone. Five science questions define and focus the core measurement and research program: i) how do coupled hydrologic and biogeochemical fluxes vary across the rain-snow transition, ii) what is the role of extreme hydrologic events in water and biogeochemical balances, iii) to what extent does vegetation modulate or actively control the primary subsurface fluxes of water and nutrients, iv) over what time and space scales, and during what seasons, are short-circuit pathways dominant in the critical zone, and v) how does the presence of a seasonal snowpack affect the subsurface, critical zone, soils, geomorphology, biogeochemistry and hydrology, and how will the system respond as climate warms and snowpacks recede. Some unique features of the Sierra Nevada system as compared to more mesic sites include: i) hydrophobic soils, ii) islands of fertility in soils, iii) dominant role of catastrophic events, e.g. fire, and iv) spatial decoupling of decomposition from root uptake in soil profile. The rationale for measurement design, including the value of high-frequency data will be illustrated, as will the strategy for providing community data and information, and educational programs.

  13. EFFECT OF NUTRIENT LOADING ON BIOGEOCHEMICAL AND MICROBIAL PROCESSES IN A NEW ENGLAND HIGH SALT MARSH, SPARTINA PATNES, (AITON MUHL)

    EPA Science Inventory

    Coastal marshes represent an important transitional zone between uplands and estuaries and can assimilate nutrient inputs from uplands. We examined the effects of nitrogen (N) and phosphorus (P) fertilization on biogeochemical and microbial processes during the summer growing sea...

  14. Comparing soil biogeochemical processes in novel and natural boreal forest ecosystems

    NASA Astrophysics Data System (ADS)

    Quideau, S. A.; Swallow, M. J. B.; Prescott, C. E.; Grayston, S. J.; Oh, S.-W.

    2013-04-01

    Emulating the variability that exists in the natural landscape prior to disturbance should be a goal of soil reconstruction and land reclamation efforts following resource extraction. Long-term ecosystem sustainability within reclaimed landscapes can only be achieved with the re-establishment of biogeochemical processes between reconstructed soils and plants. In this study, we assessed key soil biogeochemical attributes (nutrient availability, organic matter composition, and microbial communities) in reconstructed, novel, anthropogenic ecosystems covering different reclamation treatments following open-cast mining for oil extraction. We compared the attributes to those present in a range of natural soils representative of mature boreal forest ecosystems in the same area of northern Alberta. Soil nutrient availability was determined in situ with resin probes, organic matter composition was described with 13C nuclear magnetic resonance spectroscopy and soil microbial community structure was characterized using phospholipid fatty acid analysis. Significant differences among natural ecosystems were apparent in nutrient availability and seemed more related to the dominant tree cover than to soil type. When analyzed together, all natural forests differed significantly from the novel ecosystems, in particular with respect to soil organic matter composition. However, there was some overlap between the reconstructed soils and some of the natural ecosystems in nutrient availability and microbial communities, but not in organic matter characteristics. Hence, our results illustrate the importance of considering the range of natural landscape variability, and including several soil biogeochemical attributes when comparing novel, anthropogenic ecosystems to the mature ecosystems that constitute ecological targets.

  15. Comparing soil biogeochemical processes in novel and natural boreal forest ecosystems

    NASA Astrophysics Data System (ADS)

    Quideau, S. A.; Swallow, M. J. B.; Prescott, C. E.; Grayston, S. J.; Oh, S.-W.

    2013-08-01

    Emulating the variability that exists in the natural landscape prior to disturbance should be a goal of soil reconstruction and land reclamation efforts following resource extraction. Long-term ecosystem sustainability within reclaimed landscapes can only be achieved with the re-establishment of biogeochemical processes between reconstructed soils and plants. In this study, we assessed key soil biogeochemical attributes (nutrient availability, organic matter composition, and microbial communities) in reconstructed, novel, anthropogenic ecosystems, covering different reclamation treatments following open-cast mining for oil extraction. We compared the attributes to those present in a range of natural soils representative of mature boreal forest ecosystems in the same area of Northern Alberta. Soil nutrient availability was determined in situ with resin probes, organic matter composition was described with 13C nuclear magnetic resonance spectroscopy and soil microbial community structure was characterized using phospholipid fatty acid analysis. Significant differences among natural ecosystems were apparent in nutrient availability and seemed more related to the dominant tree cover than to soil type. When analyzed together, all natural forests differed significantly from the novel ecosystems, in particular with respect to soil organic matter composition. However, there was some overlap between the reconstructed soils and some of the natural ecosystems in nutrient availability and microbial communities, but not in organic matter characteristics. Hence, our results illustrate the importance of considering the range of natural landscape variability and including several soil biogeochemical attributes when comparing novel, anthropogenic ecosystems to the mature ecosystems that constitute ecological targets.

  16. Biogeochemical processes on tree islands in the greater everglades: Initiating a new paradigm

    USGS Publications Warehouse

    Wetzel, P.R.; Sklar, Fred H.; Coronado, C.A.; Troxler, T.G.; Krupa, S.L.; Sullivan, P.L.; Ewe, S.; Price, R.M.; Newman, S.; Orem, W.H.

    2011-01-01

    Scientists' understanding of the role of tree islands in the Everglades has evolved from a plant community of minor biogeochemical importance to a plant community recognized as the driving force for localized phosphorus accumulation within the landscape. Results from this review suggest that tree transpiration, nutrient infiltration from the soil surface, and groundwater flow create a soil zone of confluence where nutrients and salts accumulate under the head of a tree island during dry periods. Results also suggest accumulated salts and nutrients are flushed downstream by regional water flows during wet periods. That trees modulate their environment to create biogeochemical hot spots and strong nutrient gradients is a significant ecological paradigm shift in the understanding of the biogeochemical processes in the Everglades. In terms of island sustainability, this new paradigm suggests the need for distinct dry-wet cycles as well as a hydrologic regime that supports tree survival. Restoration of historic tree islands needs further investigation but the creation of functional tree islands is promising. Copyright ?? 2011 Taylor & Francis Group, LLC.

  17. Soil property control of biogeochemical processes beneath two subtropical stormwater infiltration basins.

    PubMed

    O'Reilly, Andrew M; Wanielista, Martin P; Chang, Ni-Bin; Harris, Willie G; Xuan, Zhemin

    2012-01-01

    Substantially different biogeochemical processes affecting nitrogen fate and transport were observed beneath two stormwater infiltration basins in north-central Florida. Differences are related to soil textural properties that deeply link hydroclimatic conditions with soil moisture variations in a humid, subtropical climate. During 2008, shallow groundwater beneath the basin with predominantly clayey soils (median, 41% silt+clay) exhibited decreases in dissolved oxygen from 3.8 to 0.1 mg L and decreases in nitrate nitrogen (NO-N) from 2.7 mg L to <0.016 mg L, followed by manganese and iron reduction, sulfate reduction, and methanogenesis. In contrast, beneath the basin with predominantly sandy soils (median, 2% silt+clay), aerobic conditions persisted from 2007 through 2009 (dissolved oxygen, 5.0-7.8 mg L), resulting in NO-N of 1.3 to 3.3 mg L in shallow groundwater. Enrichment of δN and δO of NO combined with water chemistry data indicates denitrification beneath the clayey basin and relatively conservative NO transport beneath the sandy basin. Soil-extractable NO-N was significantly lower and the copper-containing nitrite reductase gene density was significantly higher beneath the clayey basin. Differences in moisture retention capacity between fine- and coarse-textured soils resulted in median volumetric gas-phase contents of 0.04 beneath the clayey basin and 0.19 beneath the sandy basin, inhibiting surface/subsurface oxygen exchange beneath the clayey basin. Results can inform development of soil amendments to maintain elevated moisture content in shallow soils of stormwater infiltration basins, which can be incorporated in improved best management practices to mitigate NO impacts.

  18. Soil property control of biogeochemical processes beneath two subtropical stormwater infiltration basins

    USGS Publications Warehouse

    O'Reilly, Andrew M.; Wanielista, Martin P.; Chang, Ni-Bin; Harris, Willie G.; Xuan, Zhemin

    2012-01-01

    Substantially different biogeochemical processes affecting nitrogen fate and transport were observed beneath two stormwater infiltration basins in north-central Florida. Differences are related to soil textural properties that deeply link hydroclimatic conditions with soil moisture variations in a humid, subtropical climate. During 2008, shallow groundwater beneath the basin with predominantly clayey soils (median, 41% silt+clay) exhibited decreases in dissolved oxygen from 3.8 to 0.1 mg L-1 and decreases in nitrate nitrogen (NO3-–N) from 2.7 mg L-1 to -1, followed by manganese and iron reduction, sulfate reduction, and methanogenesis. In contrast, beneath the basin with predominantly sandy soils (median, 2% silt+clay), aerobic conditions persisted from 2007 through 2009 (dissolved oxygen, 5.0–7.8 mg L-1), resulting in NO3-–N of 1.3 to 3.3 mg L-1 in shallow groundwater. Enrichment of d15N and d18O of NO3- combined with water chemistry data indicates denitrification beneath the clayey basin and relatively conservative NO3- transport beneath the sandy basin. Soil-extractable NO3-–N was significantly lower and the copper-containing nitrite reductase gene density was significantly higher beneath the clayey basin. Differences in moisture retention capacity between fine- and coarse-textured soils resulted in median volumetric gas-phase contents of 0.04 beneath the clayey basin and 0.19 beneath the sandy basin, inhibiting surface/subsurface oxygen exchange beneath the clayey basin. Results can inform development of soil amendments to maintain elevated moisture content in shallow soils of stormwater infiltration basins, which can be incorporated in improved best management practices to mitigate NO3- impacts.

  19. Tracing biogeochemical processes in stream water and groundwater using non-linear statistics

    NASA Astrophysics Data System (ADS)

    Lischeid, Gunnar; Bittersohl, Jochen

    2008-07-01

    SummaryStream water and groundwater solute concentration are subject to a multitude of biogeochemical processes that act at different scales and are often characterized by non-linear relationships and feedback loops. Different multivariate statistical methods were applied to investigate the interplay of different processes. The data set from the Lehstenbach catchment in South Germany comprised 2641 stream water and groundwater samples from 38 different sites in the catchment, where 13 different solutes had been determined. According to the correlation dimension analysis, the number of dominant processes was four. The first four components determined via principal component analysis comprised 88% of the total variance, whereas the non-linear isometric feature mapping explained 92% with the first four components. These components were ascribed to prevailing biogeochemical processes and were used to investigate spatial and temporal patterns. Redox processes and contamination by road salt explained 35% of the variance each. Another 13% were ascribed to near-surface runoff in the acidified topsoil, and 9% to the impact of contaminated filter gravel in some of the groundwater wells. The redox component exhibited clear seasonal patterns at most stream water and groundwater sampling sites, with the most reduced conditions in late summer, immediately before the onset of re-wetting. There was clear evidence that redox processes, especially denitrification, play an important role even in the oxic aquifer. During discharge peaks, stream water exhibited higher values of the near-surface runoff component. However, the associated lower values of the redox component pointed to near-surface runoff in the riparian wetlands as the predominating runoff generation process rather than to a contribution of upslope soil water. A series of major rain storms in fall 1998 altered groundwater and stream water solute concentration for months: stream water and groundwater became more oxic and

  20. [DNDC model, a model of biogeochemical processes: Research progress and applications].

    PubMed

    Guo, Jia-Wei; Zou, Yuan-Chun; Huo, Li-Li; Lü, Xian-Guo

    2013-02-01

    Denitrification-decomposition (DNDC) model can estimate the emission fluxes of soil trace gases such as carbon dioxide (CO2), methane (CH4) , and nitrous oxide (N2O) via the coupling of the denitrification and decomposition processes driven by soil environmental factors. At present, DNDC model is one of the most successful models in the world in simulating the terrestrial biogeochemical cycles. This paper mainly reviewed the development process of the DNDC model, its structure, model validation, and sensitive factor analysis, and summarized the hot fields in the applications of the model.

  1. Trees actively and directly influence biogeochemical processes in boreal forested watersheds

    NASA Astrophysics Data System (ADS)

    Högberg, Peter

    2010-05-01

    Trees actively and directly influence biogeochemical processes in boreal forested watersheds Peter Högberg, Dept. of Forest Ecology and Management, SLU, SE-901 83 Umeå, Sweden It is increasingly realized that trees are directly influencing soil processes, and thereby significantly also biogeochemical processes at the scale of watersheds. For example, it is now well established that recent photosynthesis supports on average around 50% of the soil respiratory activity. It takes only a few days from tree canopy photosynthesis to the use of that C by plant roots and soil microbes. Importantly, not only does this represent a significant and rapid return flux of CO2 back to the atmosphere, but it also relates to a range of important biogeochemical processes. These occur not only in the soil, but also in streams and lakes, e.g., in nutrient-poor boreal forests areas labile C compounds produced by tree roots and their associated microorganisms constitute an important C source for lake biota. Furthermore, the tree belowground C allocation is under strong physiological control and responds to the supply of nutrients, especially to the supply of nitrogen. When this is low, as in most boreal forests, the belowground C allocation to roots and mycorrhizal fungi is large. This explains the very large N retention capacity of these forests. However, after large additions of N, this belowground C flux is reduced and consequently also the N retention capacity of mycorrhizal fungi. When this occurs, bacteria, organisms with a much lower C/N ratio, become dominant; but as these are C-limited, their capacity to sequester N is much lower than that of fungi. As a consequence, the N cycle opens up, and N is lost through leaching of nitrate and denitrification. However, if the N-load is removed, the trees start to allocate more C belowground to their mycorrhizal fungi again, and this important N-trap is restored. Thus, there are many examples of how trees actively and directly (with short

  2. Technical note: Sampling and processing of mesocosm sediment trap material for quantitative biogeochemical analysis

    NASA Astrophysics Data System (ADS)

    Boxhammer, Tim; Bach, Lennart T.; Czerny, Jan; Riebesell, Ulf

    2016-05-01

    Sediment traps are the most common tool to investigate vertical particle flux in the marine realm. However, the spatial and temporal decoupling between particle formation in the surface ocean and particle collection in sediment traps at depth often handicaps reconciliation of production and sedimentation even within the euphotic zone. Pelagic mesocosms are restricted to the surface ocean, but have the advantage of being closed systems and are therefore ideally suited to studying how processes in natural plankton communities influence particle formation and settling in the ocean's surface. We therefore developed a protocol for efficient sample recovery and processing of quantitatively collected pelagic mesocosm sediment trap samples for biogeochemical analysis. Sedimented material was recovered by pumping it under gentle vacuum through a silicon tube to the sea surface. The particulate matter of these samples was subsequently separated from bulk seawater by passive settling, centrifugation or flocculation with ferric chloride, and we discuss the advantages and efficiencies of each approach. After concentration, samples were freeze-dried and ground with an easy to adapt procedure using standard lab equipment. Grain size of the finely ground samples ranged from fine to coarse silt (2-63 µm), which guarantees homogeneity for representative subsampling, a widespread problem in sediment trap research. Subsamples of the ground material were perfectly suitable for a variety of biogeochemical measurements, and even at very low particle fluxes we were able to get a detailed insight into various parameters characterizing the sinking particles. The methods and recommendations described here are a key improvement for sediment trap applications in mesocosms, as they facilitate the processing of large amounts of samples and allow for high-quality biogeochemical flux data.

  3. Technical Note: Sampling and processing of mesocosm sediment trap material for quantitative biogeochemical analysis

    NASA Astrophysics Data System (ADS)

    Boxhammer, T.; Bach, L. T.; Czerny, J.; Riebesell, U.

    2015-11-01

    Sediment traps are the most common tool to investigate vertical particle flux in the marine realm. However, the spatial decoupling between particle formation and collection often handicaps reconciliation of these two processes even within the euphotic zone. Pelagic mesocosms have the advantage of being closed systems and are therefore ideally suited to study how processes in natural plankton communities influence particle formation and settling in the ocean's surface. We therefore developed a protocol for efficient sample recovery and processing of quantitatively collected pelagic mesocosm sediment trap samples. Sedimented material was recovered by pumping it under gentle vacuum through a silicon tube to the sea surface. The particulate matter of these samples was subsequently concentrated by passive settling, centrifugation or flocculation with ferric chloride and we discuss the advantages of each approach. After concentration, samples were freeze-dried and ground with an easy to adapt procedure using standard lab equipment. Grain size of the finely ground samples ranges from fine to coarse silt (2-63 μm), which guarantees homogeneity for representative subsampling, a widespread problem in sediment trap research. Subsamples of the ground material were perfectly suitable for a variety of biogeochemical measurements and even at very low particle fluxes we were able to get a detailed insight on various parameters characterizing the sinking particles. The methods and recommendations described here are a key improvement for sediment trap applications in mesocosms, as they facilitate processing of large amounts of samples and allow for high-quality biogeochemical flux data.

  4. Can spectroscopic analysis improve our understanding of biogeochemical processes in agricultural streams?

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Ann Louise

    2015-04-01

    In agricultural catchments diffuse fluxes of nutrients, mainly nitrogen (N) and phosphorus (P) from arable land and livestock are responsible for pollution of receiving waters and their eutrophication. Organic matter (OM) can play an important role in mediating a range of biogeochemical processes controlling diffuse pollution in streams and at their interface with surrounding land in the riparian and hyporheic zones. Thus, a holistic and simultaneous monitoring of N, P and OM fractions can help to improve our understanding of biogeochemical functioning of agricultural streams. In this study we build on intensive in situ monitoring of diffuse pollution in a small agricultural groundwater-fed stream in NW England carried out since 2009. The in situ monitoring unit captures high-frequency (15 minutes to hourly) responses of water quality parameters including total phosphorus, total reactive phosphorus and nitrate-nitrogen to changing flow conditions. For two consecutive hydrological years we have carried out additional spectroscopic water analyses to characterise organic matter components and their interactions with nutrient fractions. Automated and grab water samples have been analysed using ultraviolet-visible (UV-Vis) absorbance and excitation-emission (EEM) fluorescence spectroscopy. In addition, a tryptophan sensor was trialled to capture in situ fluorescence dynamics. Our paper evaluates patterns in nutrient and OM responses to baseflow and storm flow conditions and provides an assessment of storage-related changes of automated samples and temperature and turbidity effects on in situ tryptophan measurements. The paper shows the value of spectroscopic measurements to understand biogeochemical and hydrological nutrient dynamics and quantifies analytical uncertainty associated with both laboratory-based and in situ spectroscopic measurements.

  5. Characterizing biogeochemical processes in the hyporheic zone using flume experiments and reactive transport modeling

    NASA Astrophysics Data System (ADS)

    Quick, A. M.; Reeder, W. J.; Farrell, T. B.; Feris, K. P.; Tonina, D.; Benner, S. G.

    2015-12-01

    The hyporheic zones of streams are hotspots of biogeochemical cycling, where reactants from surface water and groundwater are continually brought into contact with microbial populations on the surfaces of stream sediments and reaction products are removed by hyporheic flow and degassing. Using large flume experiments we have documented the complex redox dynamics associated with dune-scale hyporheic flow. Observations, coupled with reactive transport modeling, provide insight into how flow dictates spatio-temporal distribution of redox reactions and the associated consumption and production of reactants and products. Dune hyporheic flow was experimentally produced by maintaining control over flow rates, slopes, sediment grain size, bedform geomorphology, and organic carbon content. An extensive in-situ monitoring array combined with sampling events over time elucidated redox-sensitive processes including constraints on the spatial distribution and magnitude of aerobic respiration, organic carbon consumption, sulfide deposition, and denitrification. Reactive transport modeling reveals further insight into the influence of system geometry and reaction rate. As an example application of the model, the relationship between residence times and reaction rates may be used to generate Damköhler numbers that are related to biogeochemical processes, such as the potential of streambed morphology and nitrate loading to influence production of the greenhouse gas nitrous oxide via incomplete denitrification.

  6. Tracing biogeochemical and microbial variability over a complete oil sand mining and recultivation process.

    PubMed

    Noah, Mareike; Lappé, Michael; Schneider, Beate; Vieth-Hillebrand, Andrea; Wilkes, Heinz; Kallmeyer, Jens

    2014-11-15

    Recultivation of disturbed oil sand mining areas is an issue of increasing importance. Nevertheless only little is known about the fate of organic matter, cell abundances and microbial community structures during oil sand processing, tailings management and initial soil development on reclamation sites. Thus the focus of this work is on biogeochemical changes of mined oil sands through the entire process chain until its use as substratum for newly developing soils on reclamation sites. Therefore, oil sand, mature fine tailings (MFTs) from tailings ponds and drying cells and tailings sand covered with peat-mineral mix (PMM) as part of land reclamation were analyzed. The sample set was selected to address the question whether changes in the above-mentioned biogeochemical parameters can be related to oil sand processing or biological processes and how these changes influence microbial activities and soil development. GC-MS analyses of oil-derived biomarkers reveal that these compounds remain unaffected by oil sand processing and biological activity. In contrast, changes in polycyclic aromatic hydrocarbon (PAH) abundance and pattern can be observed along the process chain. Especially naphthalenes, phenanthrenes and chrysenes are altered or absent on reclamation sites. Furthermore, root-bearing horizons on reclamation sites exhibit cell abundances at least ten times higher (10(8) to 10(9) cells g(-1)) than in oil sand and MFT samples (10(7) cells g(-1)) and show a higher diversity in their microbial community structure. Nitrate in the pore water and roots derived from the PMM seem to be the most important stimulants for microbial growth. The combined data show that the observed compositional changes are mostly related to biological activity and the addition of exogenous organic components (PMM), whereas oil extraction, tailings dewatering and compaction do not have significant influences on the evaluated compounds. Microbial community composition remains relatively

  7. Tracing biogeochemical and microbial variability over a complete oil sand mining and recultivation process.

    PubMed

    Noah, Mareike; Lappé, Michael; Schneider, Beate; Vieth-Hillebrand, Andrea; Wilkes, Heinz; Kallmeyer, Jens

    2014-11-15

    Recultivation of disturbed oil sand mining areas is an issue of increasing importance. Nevertheless only little is known about the fate of organic matter, cell abundances and microbial community structures during oil sand processing, tailings management and initial soil development on reclamation sites. Thus the focus of this work is on biogeochemical changes of mined oil sands through the entire process chain until its use as substratum for newly developing soils on reclamation sites. Therefore, oil sand, mature fine tailings (MFTs) from tailings ponds and drying cells and tailings sand covered with peat-mineral mix (PMM) as part of land reclamation were analyzed. The sample set was selected to address the question whether changes in the above-mentioned biogeochemical parameters can be related to oil sand processing or biological processes and how these changes influence microbial activities and soil development. GC-MS analyses of oil-derived biomarkers reveal that these compounds remain unaffected by oil sand processing and biological activity. In contrast, changes in polycyclic aromatic hydrocarbon (PAH) abundance and pattern can be observed along the process chain. Especially naphthalenes, phenanthrenes and chrysenes are altered or absent on reclamation sites. Furthermore, root-bearing horizons on reclamation sites exhibit cell abundances at least ten times higher (10(8) to 10(9) cells g(-1)) than in oil sand and MFT samples (10(7) cells g(-1)) and show a higher diversity in their microbial community structure. Nitrate in the pore water and roots derived from the PMM seem to be the most important stimulants for microbial growth. The combined data show that the observed compositional changes are mostly related to biological activity and the addition of exogenous organic components (PMM), whereas oil extraction, tailings dewatering and compaction do not have significant influences on the evaluated compounds. Microbial community composition remains relatively

  8. Advances in Coupling of Kinetics and Molecular Scale Tools to Shed Light on Soil Biogeochemical Processes

    SciTech Connect

    Sparks, Donald

    2014-09-02

    Biogeochemical processes in soils such as sorption, precipitation, and redox play critical roles in the cycling and fate of nutrients, metal(loid)s and organic chemicals in soil and water environments. Advanced analytical tools enable soil scientists to track these processes in real-time and at the molecular scale. Our review focuses on recent research that has employed state-of-the-art molecular scale spectroscopy, coupled with kinetics, to elucidate the mechanisms of nutrient and metal(loid) reactivity and speciation in soils. We found that by coupling kinetics with advanced molecular and nano-scale tools major advances have been made in elucidating important soil chemical processes including sorption, precipitation, dissolution, and redox of metal(loids) and nutrients. Such advances will aid in better predicting the fate and mobility of nutrients and contaminants in soils and water and enhance environmental and agricultural sustainability.

  9. Plant impact on the biogeochemical cycle of silicon and related weathering processes

    NASA Astrophysics Data System (ADS)

    Alexandre, Anne; Meunier, Jean-Dominique; Colin, Fabrice; Koud, Jean-Mathias

    1997-02-01

    The contribution of plants to the biogeochemical cycle of Si and related weathering processes was studied in an equatorial rainforest ecosystem (Congo) where the biologic turnover of Si is high (58 to 76 kg/ha/y). Litterfall leaves, a soil profile and groundwaters were analysed. Phytoliths and organic matter have a similar distribution with depth in the soil profile. The model of a bicompartmental distribution of organic matter is applied to phytolith distribution and shows that about 92% of the biogenic silica input is rapidly recycled while about 8% of the biogenic silica input supplies a stable pool of phytoliths, with a lower turnover. Reprecipitation of silica was observed at the base of the soil profile, indicating a local geochemical environment that is oversaturated with respect to amorphous silica. A balance in biogeochemical cycle of Si requires that the vegetation absorb dissolved silicon released from weathering of minerals, which otherwise would be available for mineral neoformation or export from the profile towards regional drainages. Plant uptake of Si increases the chemical weathering rate without increasing the denudation rate. This study shows that the uptake, storage, and release of Si by the vegetation have to be taken into account when using dissolved Si for tracing chemical weathering dynamics.

  10. Multi-scale Characterization and Prediction of Coupled Subsurface Biogeochemical-Hydrological Processes

    SciTech Connect

    Hubbard, Susan; Williams, Ken; Steefel, Carl; Banfield, Jill; Long, Phil; Slater, Lee; Pride, Steve; Jinsong Chen

    2006-06-01

    To advance solutions needed for remediation of DOE contaminated sites, approaches are needed that can elucidate and predict reactions associated with coupled biological, geochemical, and hydrological processes over a variety of spatial scales and in heterogeneous environments. Our previous laboratory experimental experiments, which were conducted under controlled and homogeneous conditions, suggest that geophysical methods have the potential for elucidating system transformations that often occur during remediation. Examples include tracking the onset and aggregation of precipitates associated with sulfate reduction using seismic and complex resistivity methods (Williams et al., 2005; Ntarlagiannis et al., 2005) as well as estimating the volume of evolved gas associated with denitrification using radar velocity. These exciting studies illustrated that geophysical responses correlated with biogeochemical changes, but also that multiple factors could impact the geophysical signature and thus a better understanding as well as integration tools were needed to advance the techniques to the point where they can be used to provide quantitative estimates of system transformations.

  11. Compound-specific isotopic analyses: a novel tool for reconstruction of ancient biogeochemical processes

    NASA Technical Reports Server (NTRS)

    Hayes, J. M.; Freeman, K. H.; Popp, B. N.; Hoham, C. H.

    1990-01-01

    Patterns of isotopic fractionation in biogeochemical processes are reviewed and it is suggested that isotopic fractionations will be small when substrates are large. If so, isotopic compositions of biomarkers will reflect those of their biosynthetic precursors. This prediction is tested by consideration of results of analyses of geoporphyrins and geolipids from the Greenhorn Formation (Cretaceous, Western Interior Seaway of North America) and the Messel Shale (Eocene, lacustrine, southern Germany). It is shown (i) that isotopic compositions of porphyrins that are related to a common source, but which have been altered structurally, cluster tightly and (ii) that isotopic differences between geolipids and porphyrins related to a common source are equal to those observed in modern biosynthetic products. Both of these observations are consistent with preservation of biologically controlled isotopic compositions during diagenesis. Isotopic compositions of individual compounds can thus be interpreted in terms of biogeochemical processes in ancient depositional environments. In the Cretaceous samples, isotopic compositions of n-alkanes are covariant with those of total organic carbon, while delta values for pristane and phytane are covariant with those of porphyrins. In this unit representing an open marine environment, the preserved acyclic polyisoprenoids apparently derive mainly from primary material, while the extractable, n-alkanes derive mainly from lower levels of the food chain. In the Messel Shale, isotopic compositions of individual biomarkers range from -20.9 to -73.4% vs PDB. Isotopic compositions of specific compounds can be interpreted in terms of origin from methylotrophic, chemautotrophic, and chemolithotrophic microorganisms as well as from primary producers that lived in the water column and sediments of this ancient lake.

  12. Spatial modeling of coupled hydrologic-biogeochemical processes for the Southern Sierra Critical Zone Observatory

    NASA Astrophysics Data System (ADS)

    Tague, C.

    2007-12-01

    One of the primary roles of modeling in critical zone research studies is to provide a framework for integrating field measurements and theory and for generalizing results across space and time. In the Southern Sierra Critical Zone Observatory (SCZO), significant spatial heterogeneity associated with mountainous terrain combined with high inter-annual and seasonal variation in climate, necessitates the use of spatial-temporal models for generating landscape scale understanding and predictions. Science questions related to coupled hydrologic and biogeochemical fluxes within the critical zone require a framework that can account for multiple and interacting processes. One of the core tools for the SCZO will be RHESSYs (Regional hydro-ecologic simulation system). RHESSys is an existing GIS-based model of hydrology and biogeochemical cycling. For the SCZO, we use RHESSys as an open-source, objected oriented model that can be extended to incorporate findings from field-based monitoring and analysis. We use the model as a framework for data assimilation, spatial-temporal interpolation, prediction, and scenario and hypothesis generation. Here we demonstrate the use of RHESSys as a hypothesis generation tool. We show how initial RHESSys predictions can be used to estimate when and where connectivity within the critical zone will lead to significant spatial or temporal gradients in vegetation carbon and moisture fluxes. We use the model to explore the potential implications of heterogeneity in critical zone controls on hydrologic processes at two scales: micro and macro. At the micro scale, we examine the role of preferential flowpaths. At the macro scale we consider the importance of upland-riparian zone connectivity. We show how the model can be used to design efficient field experiments by, a-priori providing quantitative estimate of uncertainty and highlighting when and where measurements might most effectively reduce that uncertainty.

  13. Spatial dynamics of biogeochemical processes in the St. Louis River freshwater estuary

    EPA Science Inventory

    In the Great Lakes, river-lake transition zones within freshwater estuaries are hydrologically and biogeochemically dynamic areas that regulate nutrient and energy fluxes between rivers and Great Lakes. The goal of our study was to characterize the biogeochemical properties of th...

  14. Evaluation of Boundless Biogeochemical Cycle through Development of Process-Based Eco-Hydrological and Biogeochemical Cycle Model to Incorporate Terrestrial-Aquatic Continuum

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2014-12-01

    Inland water might act as important transport pathway for continental biogeochemical cycle although its contribution has remained uncertain yet due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local-regional-global scales, and can simulate iteratively nonlinear feedback between hydrologic-geomorphic-ecological processes. Because NICE incorporates 3-D groundwater sub-model and expands from previous 1- or 2-D or steady state, the model can simulate the lateral transport pronounced at steeper-slope or riparian/floodplain with surface-groundwater connectivity. River discharge and groundwater level simulated by NICE agreed reasonably with those in previous researches (Niu et al., 2007; Fan et al., 2013) and extended to clarify lateral subsurface also has important role on global hydrologic cycle (Nakayama, 2011b; Nakayama and Shankman, 2013b) though the resolution was coarser. NICE was further developed to incorporate biogeochemical cycle including reaction between inorganic and organic carbons in terrestrial and aquatic ecosystems. The missing role of carbon cycle simulated by NICE, for example, CO2 evasion from inland water (global total flux was estimated as about 1.0 PgC/yr), was relatively in good agreement in that estimated by empirical relation using previous pCO2 data (Aufdenkampe et al., 2011; Laruelle et al., 2013). The model would play important role in identification of greenhouse gas balance of the biosphere and spatio-temporal hot spots, and bridging gap between top-down and bottom-up approaches (Cole et al. 2007; Frei et al. 2012).

  15. Reactive transport modelling of biogeochemical processes and carbon isotope geochemistry inside a landfill leachate plume.

    PubMed

    van Breukelen, Boris M; Griffioen, Jasper; Röling, Wilfred F M; van Verseveld, Henk W

    2004-06-01

    The biogeochemical processes governing leachate attenuation inside a landfill leachate plume (Banisveld, the Netherlands) were revealed and quantified using the 1D reactive transport model PHREEQC-2. Biodegradation of dissolved organic carbon (DOC) was simulated assuming first-order oxidation of two DOC fractions with different reactivity, and was coupled to reductive dissolution of iron oxide. The following secondary geochemical processes were required in the model to match observations: kinetic precipitation of calcite and siderite, cation exchange, proton buffering and degassing. Rate constants for DOC oxidation and carbonate mineral precipitation were determined, and other model parameters were optimized using the nonlinear optimization program PEST by means of matching hydrochemical observations closely (pH, DIC, DOC, Na, K, Ca, Mg, NH4, Fe(II), SO4, Cl, CH4, saturation index of calcite and siderite). The modelling demonstrated the relevance and impact of various secondary geochemical processes on leachate plume evolution. Concomitant precipitation of siderite masked the act of iron reduction. Cation exchange resulted in release of Fe(II) from the pristine anaerobic aquifer to the leachate. Degassing, triggered by elevated CO2 pressures caused by carbonate precipitation and proton buffering at the front of the plume, explained the observed downstream decrease in methane concentration. Simulation of the carbon isotope geochemistry independently supported the proposed reaction network. PMID:15134877

  16. Perirheic mixing and biogeochemical processing in flow-through and backwater floodplain wetlands

    NASA Astrophysics Data System (ADS)

    Jones, C. Nathan; Scott, Durelle T.; Edwards, Brandon L.; Keim, Richard F.

    2014-09-01

    Inundation hydrology and associated processes control biogeochemical processing in floodplains. To better understand how hydrologic connectivity, residence time, and intrafloodplain mixing vary in floodplain wetlands, we examined how water quality of two contrasting areas in the floodplain of the Atchafalaya River—a flow-through and a backwater wetland—responded to an annual flood pulse. Large, synoptic sampling campaigns occurred in both wetlands during the rising limb, peak, and falling limb of the hydrograph. Using a combination of conservative and reactive tracers, we inferred three dominant processes that occurred over the course of the flood pulse: flushing (rising limb), advective transport (peak), and organic matter accumulation (falling limb). Biogeochemistry of the two wetlands was similar during the peak while the river overflowed into both. However, during the rising and falling limbs, flow in the backwater wetland experienced much greater residence time. This led to the accumulation of dissolved organic matter and dissolved phosphorus. There were also elevated ratios of dissolved organic carbon to nitrate in the backwater wetland, suggesting nitrogen removal was limited by nitrate transported into the floodplain there. Collectively, our results suggest inclusion of a temporal component into the perirheic concept more fully describes inundation hydrology and biogeochemistry in large river floodplain. This article was corrected on 6 OCT 2014. See the end of the full text for details

  17. A flexible numerical component to simulate surface runoff transport and biogeochemical processes through dense vegetation

    NASA Astrophysics Data System (ADS)

    Munoz-Carpena, R.; Perez-Ovilla, O.

    2012-12-01

    Methods to estimate surface runoff pollutant removal using dense vegetation buffers (i.e. vegetative filter strips) usually consider a limited number of factors (i.e. filter length, slope) and are in general based on empirical relationships. When an empirical approach is used, the application of the model is limited to those conditions of the data used for the regression equations. The objective of this work is to provide a flexible numerical mechanistic tool to simulate dynamics of a wide range of surface runoff pollutants through dense vegetation and their physical, chemical and biological interactions based on equations defined by the user as part of the model inputs. A flexible water quality model based on the Reaction Simulation Engine (RSE) modeling component is coupled to a transport module based on the traditional Bubnov -Galerkin finite element method to solve the advection-dispersion-reaction equation using the alternating split-operator technique. This coupled transport-reaction model is linked to the VFSMOD-W (http://abe.ufl.edu/carpena/vfsmod) program to mechanistically simulate mobile and stabile pollutants through dense vegetation based on user-defined conceptual models (differential equations written in XML language as input files). The key factors to consider in the creation of a conceptual model are the components in the buffer (i.e. vegetation, soil, sediments) and how the pollutant interacts with them. The biogeochemical reaction component was tested successfully with laboratory and field scale experiments. One of the major advantages when using this tool is that the pollutant transport and removal thought dense vegetation is related to physical and biogeochemical process occurring within the filter. This mechanistic approach increases the range of use of the model to a wide range of pollutants and conditions without modification of the core model. The strength of the model relies on the mechanistic approach used for simulating the removal of

  18. The effect of gold mining and processing on biogeochemical cycles in Muteh area, Isfahan province, Iran

    NASA Astrophysics Data System (ADS)

    Keshavarzi, B.; Moore, F.

    2009-04-01

    The environmental impacts of gold mining and processing on geochemical and biogeochemical cycles in Muteh region located northwest of Esfahan province and northeast of Golpaygan city is investigated. For this purpose systematic sampling was carried out in, rock, soil, water, and sediment environments along with plant, livestocks and human hair samples. Mineralogical and Petrological studies show that ore mineral such as pyrite and arsenopyrite along with fluorine-bearing minerals like tremolite, actinolite, biotite and muscovite occur in green schist, amphibolite and lucogranitic rocks in the area. The hydrochemistry of the analysed water samples indicate that As and F display the highest concentrations among the analysed elements. Indeed arsenic has the highest concentration in both topsoil and subsoil samples when compared with other potentially toxic elements. Anthropogenic activity also have it s greatest effect on increasing arsenic concentration among the analysed samples. The concentration of the majority of the analysed elements in the shoots and leaves of two local plants of the region i.e Artemesia and Penagum is higher than their concentration in the roots. Generally speaking, Artemesia has a greater tendency for bioaccumulating heavy metals. The results of cyanide analysis in soil samples show that cyanide concentration in the soils near the newly built tailing dam is much higher than that in the vicinity of the old tailing dam. The high concentration of fluorine in the drinking water of the Muteh village is the main reason of the observed dental fluorosis symptoms seen in the inhabitants. One of the two drinking water wells which is located near the metamorphic complex and supplies part of the tap water in the village, probably has the greatest impact in this regard. A decreasing trend in fluorine concentration is illustrated with increasing distance from the metamorphic complex. Measurements of As concentration in human hair specimens indicate that As

  19. Factors Affecting the Tutoring Process.

    ERIC Educational Resources Information Center

    Hartman, Hope J.

    1990-01-01

    Analyzes factors internal to the tutor and tutee (i.e., cognition, metacognition, and affect) and external to them (e.g., teacher/tutor background knowledge, educational environment, content to be learned, socioeconomic status, family background, and cultural forces) that influence the tutoring process. Suggests a theoretical framework for…

  20. Determination of dominant biogeochemical processes in a contaminated aquifer-wetland system using multivariate statistical analysis

    USGS Publications Warehouse

    Baez-Cazull, S. E.; McGuire, J.T.; Cozzarelli, I.M.; Voytek, M.A.

    2008-01-01

    Determining the processes governing aqueous biogeochemistry in a wetland hydrologically linked to an underlying contaminated aquifer is challenging due to the complex exchange between the systems and their distinct responses to changes in precipitation, recharge, and biological activities. To evaluate temporal and spatial processes in the wetland-aquifer system, water samples were collected using cm-scale multichambered passive diffusion samplers (peepers) to span the wetland-aquifer interface over a period of 3 yr. Samples were analyzed for major cations and anions, methane, and a suite of organic acids resulting in a large dataset of over 8000 points, which was evaluated using multivariate statistics. Principal component analysis (PCA) was chosen with the purpose of exploring the sources of variation in the dataset to expose related variables and provide insight into the biogeochemical processes that control the water chemistry of the system. Factor scores computed from PCA were mapped by date and depth. Patterns observed suggest that (i) fermentation is the process controlling the greatest variability in the dataset and it peaks in May; (ii) iron and sulfate reduction were the dominant terminal electron-accepting processes in the system and were associated with fermentation but had more complex seasonal variability than fermentation; (iii) methanogenesis was also important and associated with bacterial utilization of minerals as a source of electron acceptors (e.g., barite BaSO4); and (iv) seasonal hydrological patterns (wet and dry periods) control the availability of electron acceptors through the reoxidation of reduced iron-sulfur species enhancing iron and sulfate reduction. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

  1. Biogeochemical processes controlling density stratification in an iron-meromictic lake

    NASA Astrophysics Data System (ADS)

    Nixdorf, E.; Boehrer, B.

    2015-06-01

    Biogeochemical processes and mixing regime of a lake can control each other mutually. The prominent case of iron meromixis is investigated in Waldsee near Doebern, a small lake that originated from surface mining of lignite. From a four years data set of monthly measured electrical conductivity profiles, we calculated summed conductivity as a quantitative variable reflecting the amount of electro-active substances in the entire lake. Seasonal variations followed changing chemocline height. Coinciding changes of electrical conductivities in the monimolimnion indicated that a considerable share of substances, precipitated by the advancing oxygenated epilimnion, re-dissolved in the remaining anoxic deep waters and contributed considerably to the density stratification. In addition, we constructed a lab experiment, in which aeration of monimolimnetic waters removed iron compounds and organic material. Precipitates could be identified by visual inspection. Introduced air bubbles ascended through the water column and formed a water mass similar to the mixolimnetic Waldsee water. The remaining less dense water remained floating on the nearly unchanged monimolimnetic water. In conclusion, iron meromixis as seen in Waldsee did not require two different sources of incoming waters, but the inflow of iron rich deep groundwater and the aeration through the lake surface were fully sufficient.

  2. Seasonal Variation in Floodplain Biogeochemical Processing in a Restored Headwater Stream.

    PubMed

    Jones, C Nathan; Scott, Durelle T; Guth, Christopher; Hester, Erich T; Hession, W Cully

    2015-11-17

    Stream and river restoration activities have recently begun to emphasize the enhancement of biogeochemical processing within river networks through the restoration of river-floodplain connectivity. It is generally accepted that this practice removes pollutants such as nitrogen and phosphorus because the increased contact time of nutrient-rich floodwaters with reactive floodplain sediments. Our study examines this assumption in the floodplain of a recently restored, low-order stream through five seasonal experiments. During each experiment, a floodplain slough was artificially inundated for 3 h. Both the net flux of dissolved nutrients and nitrogen uptake rate were measured during each experiment. The slough was typically a source of dissolved phosphorus and dissolved organic matter, a sink of NO3(-), and variable source/sink of ammonium. NO3(-) uptake rates were relatively high when compared to riverine uptake, especially during the spring and summer experiments. However, when scaled up to the entire 1 km restoration reach with a simple inundation model, less than 0.5-1.5% of the annual NO3(-) load would be removed because of the short duration of river-floodplain connectivity. These results suggest that restoring river-floodplain connectivity is not necessarily an appropriate best management practice for nutrient removal in low-order streams with legacy soil nutrients from past agricultural landuse. PMID:26463837

  3. Seasonal Variation in Floodplain Biogeochemical Processing in a Restored Headwater Stream.

    PubMed

    Jones, C Nathan; Scott, Durelle T; Guth, Christopher; Hester, Erich T; Hession, W Cully

    2015-11-17

    Stream and river restoration activities have recently begun to emphasize the enhancement of biogeochemical processing within river networks through the restoration of river-floodplain connectivity. It is generally accepted that this practice removes pollutants such as nitrogen and phosphorus because the increased contact time of nutrient-rich floodwaters with reactive floodplain sediments. Our study examines this assumption in the floodplain of a recently restored, low-order stream through five seasonal experiments. During each experiment, a floodplain slough was artificially inundated for 3 h. Both the net flux of dissolved nutrients and nitrogen uptake rate were measured during each experiment. The slough was typically a source of dissolved phosphorus and dissolved organic matter, a sink of NO3(-), and variable source/sink of ammonium. NO3(-) uptake rates were relatively high when compared to riverine uptake, especially during the spring and summer experiments. However, when scaled up to the entire 1 km restoration reach with a simple inundation model, less than 0.5-1.5% of the annual NO3(-) load would be removed because of the short duration of river-floodplain connectivity. These results suggest that restoring river-floodplain connectivity is not necessarily an appropriate best management practice for nutrient removal in low-order streams with legacy soil nutrients from past agricultural landuse.

  4. Linking Food Webs and Biogeochemical Processes in Wetlands: Insights From Sulfur Isotopes

    NASA Astrophysics Data System (ADS)

    Stricker, C. A.; Guntenspergen, G. R.; Rye, R. O.

    2005-05-01

    To better understand the transfer of nutrients into prairie wetland food webs we have investigated the cycling of S (via S isotope systematics and geochemistry) in a prairie wetland landscape by characterizing sources (ground water, interstitial water, surface water) and processes in a small catchment comprised of four wetlands in eastern South Dakota. We focused on S to derive process information that is not generally available from carbon isotopes alone. The wetlands chosen for study spanned a considerable range in SO4 concentration (0.1-13.6 mM), which corresponded with landscape position. Ground water δ34SSO4 values remained relatively constant (mean = -13.2 per mil) through time. However, δ34SSO4 values of wetland surface waters ranged from -2.9 to -30.0 per mil (CDT) and were negatively correlated with SO4 concentrations (p<0.05). The isotopic variability of surface water SO4 resulted from mixing with re-oxidized sulfides associated with recently flushed wetland soils. The δ34S signatures of wetland primary (Gastropoda: Stagnicola elodes) and secondary (Odonata: Anax sp.) consumers were significantly related to surface water δ34SSO4 values (p<0.05) suggesting that food web components were responding to changes in the isotopic composition of the S source. Both primary and secondary consumer δ34S signatures differed between wetlands (ANOVA, p<0.05). These data illustrate the complexity of S cycling in prairie wetlands and the influence of wetland hydrologic and biogeochemical processes on prairie wetland food webs. Additionally, this work has demonstrated that sulfur isotopes can provide unique source and process information that cannot be derived from traditional carbon and nitrogen isotope studies.

  5. Anthropogenic forcing of estuarine hypoxic events in sub-tropical catchments: landscape drivers and biogeochemical processes.

    PubMed

    Wong, Vanessa N L; Johnston, Scott G; Burton, Edward D; Bush, Richard T; Sullivan, Leigh A; Slavich, Peter G

    2011-11-15

    Episodic hypoxic events can occur following summer floods in sub-tropical estuaries of eastern Australia. These events can cause deoxygenation of waterways and extensive fish mortality. Here, we present a conceptual model that links key landscape drivers and biogeochemical processes which contribute to post-flood hypoxic events. The model provides a framework for examining the nature of anthropogenic forcing. Modification of estuarine floodplain surface hydrology through the construction of extensive drainage networks emerges as a major contributing factor to increasing the frequency, magnitude and duration of hypoxic events. Forcing occurs in two main ways. Firstly, artificial drainage of backswamp wetlands initiates drier conditions which cause a shift in vegetation assemblages from wetland-dominant species to dryland-dominant species. These species, which currently dominate the floodplain, are largely intolerant of inundation and provide abundant labile substrate for decomposition following flood events. Decomposition of this labile carbon pool consumes oxygen in the overlying floodwaters, and results in anoxic conditions and waters with excess deoxygenation potential (DOP). Carbon metabolism can be strongly coupled with microbially-mediated reduction of accumulated Fe and Mn oxides, phases which are common on these coastal floodplain landscapes. Secondly, artificial drainage enhances discharge rates during the flood recession phase. Drains transport deoxygenated high DOP floodwaters rapidly from backswamp wetlands to the main river channel to further consume oxygen. This process effectively displaces the natural carbon metabolism processes from floodplain wetlands to the main channel. Management options to reduce the impacts of post-flood hypoxia include i) remodifying drainage on the floodplain to promote wetter conditions, thereby shifting vegetation assemblages towards inundation-tolerant species, and ii) strategic retention of floodwaters in the backswamp

  6. Cumulative Significance of Hyporheic Exchange and Biogeochemical Processing in River Networks

    NASA Astrophysics Data System (ADS)

    Harvey, J. W.; Gomez-Velez, J. D.

    2014-12-01

    Biogeochemical reactions in rivers that decrease excessive loads of nutrients, metals, organic compounds, etc. are enhanced by hydrologic interactions with microbially and geochemically active sediments of the hyporheic zone. The significance of reactions in individual hyporheic flow paths has been shown to be controlled by the contact time between river water and sediment and the intrinsic reaction rate in the sediment. However, little is known about how the cumulative effects of hyporheic processing in large river basins. We used the river network model NEXSS (Gomez-Velez and Harvey, submitted) to simulate hyporheic exchange through synthetic river networks based on the best available models of network topology, hydraulic geometry and scaling of geomorphic features, grain size, hydraulic conductivity, and intrinsic reaction rates of nutrients and metals in river sediment. The dimensionless reaction significance factor, RSF (Harvey et al., 2013) was used to quantify the cumulative removal fraction of a reactive solute by hyporheic processing. SF scales reaction progress in a single pass through the hyporheic zone with the proportion of stream discharge passing through the hyporheic zone for a specified distance. Reaction progress is optimal where the intrinsic reaction timescale in sediment matches the residence time of hyporheic flow and is less efficient in longer residence time hyporheic flow as a result of the decreasing proportion of river flow that is processed by longer residence time hyporheic flow paths. In contrast, higher fluxes through short residence time hyporheic flow paths may be inefficient because of the repeated surface-subsurface exchanges required to complete the reaction. Using NEXSS we found that reaction efficiency may be high in both small streams and large rivers, although for different reasons. In small streams reaction progress generally is dominated by faster pathways of vertical exchange beneath submerged bedforms. Slower exchange

  7. The value of automated high-frequency nutrient monitoring in inference of biogeochemical processes, temporal variability and trends

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Louise

    2013-04-01

    Stream water quality signals integrate catchment-scale processes responsible for delivery and biogeochemical transformation of the key biotic macronutrients (N, C, P). This spatial and temporal integration is particularly pronounced in the groundwater-dominated streams, as in-stream nutrient dynamics are mediated by the processes occurring within riparian and hyporheic ecotones. In this paper we show long-term high-frequency in-stream macronutrient dynamics from a small agricultural catchment located in the North West England. Hourly in-situ measurements of total and reactive phosphorus (Systea, IT), nitrate (Hach Lange, DE) and physical water quality parameters (turbidity, specific conductivity, dissolved oxygen, temperature, pH; WaterWatch, UK) were carried out on the lowland, gaining reach of the River Leith. High-frequency data show complex non-linear nutrient concentration-discharge relationships. The dominance of hysteresis effects suggests the presence of a temporally varying apportionment of allochthonous and autochthonous nutrient sources. Varying direction, magnitude and dynamics of the hysteretic responses between storm events is driven by the variation in the contributing source areas and shows the importance of the coupling of catchment-scale, in-stream, riparian and hyporheic biogeochemical cycles. The synergistic effect of physical (temperature-driven, the hyporheic exchange controlled by diffusion) and biogeochemical drivers (stream and hyporheic metabolism) on in-stream nutrient concentrations manifests itself in observed diurnal patterns. As inferred from the high-frequency nutrient monitoring, the diurnal dynamics are of the greatest importance under baseflow conditions. Understanding the role and relative importance of these processes can be difficult due to spatial and temporal heterogeneity of the key mechanisms involved. This study shows the importance of in-situ, fine temporal resolution, automated monitoring approaches in providing evidence

  8. Aggregate-scale spatial heterogeneity in reductive transformation of ferrihydrite resulting from coupled biogeochemical and physical processes

    NASA Astrophysics Data System (ADS)

    Pallud, C.; Masue-Slowey, Y.; Fendorf, S.

    2010-05-01

    Iron (hydr)oxides are ubiquitous in soils and sediments and play a dominant role in the geochemistry of surface and subsurface environments. Their fate depends on local environmental conditions, which in structured soils may vary significantly over short distances due to mass-transfer limitations on solute delivery and metabolite removal. In the present study, artificial soil aggregates were used to investigate the coupling of physical and biogeochemical processes affecting the spatial distribution of iron (Fe) phases resulting from reductive transformation of ferrihydrite. Spherical aggregates made of ferrihydrite-coated sand were inoculated with the dissimilatory Fe-reducing bacterium Shewanella putrefaciens strain CN-32, and placed into a flow reactor, the reaction cell simulates a diffusion-dominated soil aggregate surrounded by an advective flow domain. The spatial and temporal evolution of secondary mineralization products resulting from dissimilatory Fe reduction of ferrihydrite were followed within the aggregates in response to a range of flow rates and lactate concentrations. Strong radial variations in the distribution of secondary phases were observed owing to diffusively controlled delivery of lactate and efflux of Fe(II) and bicarbonate. In the aggregate cortex, only limited formation of secondary Fe phases were observed over 30 d of reaction, despite high rates of ferrihydrite reduction. Under all flow conditions tested, ferrihydrite transformation was limited in the cortex (70-85 mol.% Fe remained as ferrihydrite) because metabolites such as Fe(II) and bicarbonate were efficiently removed in outflow solutes. In contrast, within the inner fractions of the aggregate, limited mass-transfer results in metabolite (Fe(II) and bicarbonate) build-up and the consummate transformation of ferrihydrite - only 15-40 mol.% Fe remained as ferrihydrite after 30 d of reaction. Goethite/lepidocrocite, and minor amounts of magnetite, formed in the aggregate mid

  9. The "Point Zero": Monitoring of biogeochemical patterns and processes in an initial ecosystem (Lusatia, Germany)

    NASA Astrophysics Data System (ADS)

    Veste, M.; Biemelt, D.; Fischer, A.; Gerwin, W.; Schaaf, W.

    2009-04-01

    .), soil water (TDR, tensiometers), hydrology (stream flow, groundwater, water quality, etc.), erosion, and limnology (water quality). Furthermore, the establishment of higher vegetation (species, pattern) and soil fauna (species, abundance) are investigated and will be related to the physical-chemical soil development. The gathered data are the basis for the calculation of water and element fluxes in the ecosystem and their interactions with the formation of observed structures. A special focus will be on the interactions of the biogeochemical processes on different scales. First results will be presented and discussed.

  10. An integrated multi-level watershed-reservoir modeling system for examining hydrological and biogeochemical processes in small prairie watersheds.

    PubMed

    Zhang, Hua; Huang, Guo H; Wang, Dunling; Zhang, Xiaodong; Li, Gongchen; An, Chunjiang; Cui, Zheng; Liao, Renfei; Nie, Xianghui

    2012-03-15

    Eutrophication of small prairie reservoirs presents a major challenge in water quality management and has led to a need for predictive water quality modeling. Studies are lacking in effectively integrating watershed models and reservoir models to explore nutrient dynamics and eutrophication pattern. A water quality model specific to small prairie water bodies is also desired in order to highlight key biogeochemical processes with an acceptable degree of parameterization. This study presents a Multi-level Watershed-Reservoir Modeling System (MWRMS) to simulate hydrological and biogeochemical processes in small prairie watersheds. It integrated a watershed model, a hydrodynamic model and an eutrophication model into a flexible modeling framework. It can comprehensively describe hydrological and biogeochemical processes across different spatial scales and effectively deal with the special drainage structure of small prairie watersheds. As a key component of MWRMS, a three-dimensional Willows Reservoir Eutrophication Model (WREM) is developed to addresses essential biogeochemical processes in prairie reservoirs and to generate 3D distributions of various water quality constituents; with a modest degree of parameterization, WREM is able to meet the limit of data availability that often confronts the modeling practices in small watersheds. MWRMS was applied to the Assiniboia Watershed in southern Saskatchewan, Canada. Extensive efforts of field work and lab analysis were undertaken to support model calibration and validation. MWRMS demonstrated its ability to reproduce the observed watershed water yield, reservoir water levels and temperatures, and concentrations of several water constituents. Results showed that the aquatic systems in the Assiniboia Watershed were nitrogen-limited and sediment flux played a crucial role in reservoir nutrient budget and dynamics. MWRMS can provide a broad context of decision support for water resources management and water quality

  11. [Biogeochemical processes of methane cycle in the soils, swamps and lakes of Western Siberia].

    PubMed

    Gal'chenko, V F; Dulov, L E; Cramer, B; Konova, N I; Barysheva, S V

    2001-01-01

    The biogeochemical processes of methane production and oxidation were studied in the upper horizons of tundra and taiga soils and of raised bogs and lake bottom sediments nearby the Tarkosalinsk gas field in western Siberia. Both in dry and water-logged soils, the total methane concentration (in soil particles and gaseous phase) was an order of magnitude higher than in the soil gaseous phase alone (22 and 1.1 nl/cm3, respectively). In bogs and lake bottom sediments, methane concentration was as high as 11 microliters/cm3. Acetate was the major precursor of the newly formed methane. The rate of aceticlastic methanogenesis reached 55 ng C/(cm3 day), whereas that of autotrophic methanogenesis was an order of magnitude lower. The most active methane production and oxidation were observed in bogs and lake sediments where the delta 13C values of CO2 were inversely related to the intensity of bacterial methane oxidation. Methane diffusing from bogs and lake bottom sediments showed delta 13C values ranging from -78 to -47@1000, whereas the delta 13C value of carbon dioxide ranged from -18 to -6@1000. In these ecosystems, methane emission comprised from 3 to 206 mg CH4/(m2 day). Conversely, the dry and water-logged soils of tundra and taiga took up atmospheric methane at a rate varying from 0.3 to 5.3 mg CH4/(m2 day). Methane consumption in soils was of biological rather than of adsorptive nature. This was confirmed by the radioisotopic method and chamber experiments, in which weighting of methane carbon was observed (the delta 13C value changed from -51 to -41@1000). PMID:11386054

  12. Assessment of the GHG Reduction Potential from Energy Crops Using a Combined LCA and Biogeochemical Process Models: A Review

    PubMed Central

    Jiang, Dong; Hao, Mengmeng; Wang, Qiao; Huang, Yaohuan; Fu, Xinyu

    2014-01-01

    The main purpose for developing biofuel is to reduce GHG (greenhouse gas) emissions, but the comprehensive environmental impact of such fuels is not clear. Life cycle analysis (LCA), as a complete comprehensive analysis method, has been widely used in bioenergy assessment studies. Great efforts have been directed toward establishing an efficient method for comprehensively estimating the greenhouse gas (GHG) emission reduction potential from the large-scale cultivation of energy plants by combining LCA with ecosystem/biogeochemical process models. LCA presents a general framework for evaluating the energy consumption and GHG emission from energy crop planting, yield acquisition, production, product use, and postprocessing. Meanwhile, ecosystem/biogeochemical process models are adopted to simulate the fluxes and storage of energy, water, carbon, and nitrogen in the soil-plant (energy crops) soil continuum. Although clear progress has been made in recent years, some problems still exist in current studies and should be addressed. This paper reviews the state-of-the-art method for estimating GHG emission reduction through developing energy crops and introduces in detail a new approach for assessing GHG emission reduction by combining LCA with biogeochemical process models. The main achievements of this study along with the problems in current studies are described and discussed. PMID:25045736

  13. A Unified Multi-scale Model for Cross-Scale Evaluation and Integration of Hydrological and Biogeochemical Processes

    NASA Astrophysics Data System (ADS)

    Liu, C.; Yang, X.; Bailey, V. L.; Bond-Lamberty, B. P.; Hinkle, C.

    2013-12-01

    Mathematical representations of hydrological and biogeochemical processes in soil, plant, aquatic, and atmospheric systems vary with scale. Process-rich models are typically used to describe hydrological and biogeochemical processes at the pore and small scales, while empirical, correlation approaches are often used at the watershed and regional scales. A major challenge for multi-scale modeling is that water flow, biogeochemical processes, and reactive transport are described using different physical laws and/or expressions at the different scales. For example, the flow is governed by the Navier-Stokes equations at the pore-scale in soils, by the Darcy law in soil columns and aquifer, and by the Navier-Stokes equations again in open water bodies (ponds, lake, river) and atmosphere surface layer. This research explores whether the physical laws at the different scales and in different physical domains can be unified to form a unified multi-scale model (UMSM) to systematically investigate the cross-scale, cross-domain behavior of fundamental processes at different scales. This presentation will discuss our research on the concept, mathematical equations, and numerical execution of the UMSM. Three-dimensional, multi-scale hydrological processes at the Disney Wilderness Preservation (DWP) site, Florida will be used as an example for demonstrating the application of the UMSM. In this research, the UMSM was used to simulate hydrological processes in rooting zones at the pore and small scales including water migration in soils under saturated and unsaturated conditions, root-induced hydrological redistribution, and role of rooting zone biogeochemical properties (e.g., root exudates and microbial mucilage) on water storage and wetting/draining. The small scale simulation results were used to estimate effective water retention properties in soil columns that were superimposed on the bulk soil water retention properties at the DWP site. The UMSM parameterized from smaller

  14. Experimental study and steady-state simulation of biogeochemical processes in laboratory columns with aquifer material

    NASA Astrophysics Data System (ADS)

    Amirbahman, Aria; Schönenberger, René; Furrer, Gerhard; Zobrist, Jürg

    2003-07-01

    Packed bed laboratory column experiments were performed to simulate the biogeochemical processes resulting from microbially catalyzed oxidation of organic matter. These included aerobic respiration, denitrification, and Mn(IV), Fe(III) and SO 4 reduction processes. The effects of these reactions on the aqueous- and solid-phase geochemistry of the aquifer material were closely examined. The data were used to model the development of alkalinity and pH along the column. To study the independent development of Fe(III)- and SO 4-reducing environments, two columns were used. One of the columns (column 1) contained small enough concentrations of SO 4 in the influent to render the reduction of this species unimportant to the geochemical processes in the column. The rate of microbially catalyzed reduction of Mn(IV) changed with time as evidenced by the variations in the initial rate of Mn(II) production at the head of the column. The concentration of Mn in both columns was controlled by the solubility of rhodochrosite (MnCO 3(S)). In the column where significant SO 4 reduction took place (column 2), the concentration of dissolved Fe(II) was controlled by the solubility of FeS. In column 1, where SO 4 reduction was not important, maximum dissolved Fe(II) concentrations were controlled by the solubility of siderite (FeCO 3(S)). Comparison of solid-phase and aqueous-phase data suggests that nearly 20% of the produced Fe(II) precipitates as siderite in column 1. The solid-phase analysis also indicates that during the course of experiment, approximately 20% of the total Fe(III) hydroxides and more than 70% of the amorphous Fe(III) hydroxides were reduced by dissimilatory iron reduction. The most important sink for dissolved S(-II) produced by the enzymatic reduction of SO 4 was its direct reaction with solid-phase Fe(III) hydroxides leading initially to the formation of FeS. Compared to this pathway, precipitation as FeS did not constitute an important sink for S(-II) in column

  15. Identifying biogeochemical processes beneath stormwater infiltration ponds in support of a new best management practice for groundwater protection

    USGS Publications Warehouse

    O'Reilly, Andrew M.; Chang, Ni-Bin; Wanielista, Martin P.; Xuan, Zhemin; Schirmer, Mario; Hoehn, Eduard; Vogt, Tobias

    2011-01-01

     When applying a stormwater infiltration pond best management practice (BMP) for protecting the quality of underlying groundwater, a common constituent of concern is nitrate. Two stormwater infiltration ponds, the SO and HT ponds, in central Florida, USA, were monitored. A temporal succession of biogeochemical processes was identified beneath the SO pond, including oxygen reduction, denitrification, manganese and iron reduction, and methanogenesis. In contrast, aerobic conditions persisted beneath the HT pond, resulting in nitrate leaching into groundwater. Biogeochemical differences likely are related to soil textural and hydraulic properties that control surface/subsurface oxygen exchange. A new infiltration BMP was developed and a full-scale application was implemented for the HT pond. Preliminary results indicate reductions in nitrate concentration exceeding 50% in soil water and shallow groundwater beneath the HT pond.

  16. The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis.

    PubMed

    Bowman, Jeff S; Berthiaume, Chris T; Armbrust, E Virginia; Deming, Jody W

    2014-08-01

    Newly formed sea ice is a vast and biogeochemically active environment. Recently, we reported an unusual microbial community dominated by members of the Rhizobiales in frost flowers at the surface of Arctic young sea ice based on the presence of 16S gene sequences related to these strains. Here, we use metagenomic analysis of two samples, from a field of frost flowers and the underlying young sea ice, to explore the metabolic potential of this surface ice community. The analysis links genes for key biogeochemical processes to the Rhizobiales, including dimethylsulfide uptake, betaine glycine turnover, and halocarbon production. Nodulation and nitrogen fixation genes characteristic of terrestrial root-nodulating Rhizobiales were generally lacking from these metagenomes. Non-Rhizobiales clades at the ice surface had genes that would enable additional biogeochemical processes, including mercury reduction and dimethylsulfoniopropionate catabolism. Although the ultimate source of the observed microbial community is not known, considerations of the possible role of eolian deposition or transport with particles entrained during ice formation favor a suspended particle source for this microbial community.

  17. Introduction: SIPEX-2: A study of sea-ice physical, biogeochemical and ecosystem processes off East Antarctica during spring 2012

    NASA Astrophysics Data System (ADS)

    Meiners, Klaus M.; Golden, Ken M.; Heil, Petra; Lieser, Jan L.; Massom, Rob; Meyer, Bettina; Williams, Guy D.

    2016-09-01

    This editorial introduces a suite of articles resulting from the second Sea Ice Physics and Ecosystems eXperiment (SIPEX-2) voyage by presenting some background information on the study area and Antarctic sea-ice conditions, and summarising the key findings from the project. Using the Australian icebreaker RV Aurora Australis, SIPEX-2 was conducted in the area between 115-125°E and 62-66°S off East Antarctica during September to November 2012. This region had been sampled during two previous experiments, i.e. ARISE in 2003 (Massom et al., 2006a) and SIPEX in 2007 (Worby et al., 2011a). The 2012 voyage combined traditional and newly developed sampling methods with satellite and other data to measure sea-ice physical properties and processes on large scales, which provided context for biogeochemical and ecological case studies. The specific goals of the SIPEX-2 project were to: (i) measure the spatial variability in sea-ice and snow-cover properties over small- to regional-length scales; (ii) improve understanding of sea-ice kinematic processes; and (iii) advance knowledge of the links between sea-ice physical characteristics, sea-ice biogeochemical cycling and ice-associated food-web dynamics. Our field-based activities were designed to inform modelling approaches and to improve our capability to assess impacts of predicted changes in Antarctic sea ice on Southern Ocean biogeochemical cycles and ecosystem function.

  18. Regional scale hydrological and biogeochemical processes controlling high biodiversity of a groundwater fed alkaline fen

    NASA Astrophysics Data System (ADS)

    van der Zee, Sjoerd E. A. T. M.; (D. G.) Cirkel, Gijsbert; (J. P. M) witte, Flip

    2014-05-01

    The high floral biodiversity of groundwater fed fens and mesotrophic grasslands depends on the different chemical signatures of the shallow rainwater fed topsoil water and the slightly deeper geochemically affected groundwater. The relatively abrupt gradients between these two layers of groundwater enable the close proximity of plants that require quite different site factors and have different rooting depths. However, sulphur inflow into such botanically interesting areas is generally perceived as a major threat to biodiversity. Although in Europe atmospheric deposition of sulphur has decreased considerably over the last decades, groundwater pollution by sulphate may still continue due to pyrite oxidation in soil as a result of excessive fertilisation. Inflowing groundwater rich in sulphate can change biogeochemical cycling in nutrient-poor wetland ecosystems because of 'so called' internal eutrophication as well as the accumulation of dissolved sulphide, which is phytotoxic. Complementary to conventions, we propose that upwelling sulphate rich groundwater may, in fact, promote the conservation of rare and threatened alkaline fens: excessive fertilisation and pyrite oxidation also produces acidity, which invokes calcite dissolution, and increased alkalinity and hardness of the inflowing groundwater. For a very species-rich wetland nature reserve, we show that sulphate is reduced and effectively precipitated as iron sulphides, when this calcareous and sulphate rich groundwater flows upward through the organic soil of the investigated nature reserve. Also, we show that sulphate reduction occurs simultaneously with an increase in alkalinity production, which in our case results in active calcite precipitation in the soil. In spite of the occurring sulphate reduction, we found no evidence for internal eutrophication. Extremely low phosphorous concentration in the pore water could be attributed to a high C:P ratio of soil organic matter and co-precipitation with

  19. Biogeochemical Cycling

    NASA Technical Reports Server (NTRS)

    Bebout, Brad; Fonda, Mark (Technical Monitor)

    2002-01-01

    This lecture will introduce the concept of biogeochemical cycling. The roles of microbes in the cycling of nutrients, production and consumption of trace gases, and mineralization will be briefly introduced.

  20. Using Bathymodiolus tissue stable isotope signatures to infer biogeochemical process at hydrocarbon seeps

    NASA Astrophysics Data System (ADS)

    Feng, D.; Kiel, S.; Qiu, J.; Yang, Q.; Zhou, H.; Peng, Y.; Chen, D.

    2015-12-01

    Here we use stable isotopes of carbon, nitrogen and sulfur in the tissue of two bathymodiolin mussel species with different chemotrophic symbionts (methanotrophs in B. platifrons and sulfide-oxidizers in B. aduloides) to gain insights into the biogeochemical processes at an active site in 1120 m depth on the Formosa Ridge, called Site F. Because mussels with methanotrophic symbionts acquire the isotope signature of the used methane, the average δ13C values of B. platifrons (-70.3‰; n=36) indicates a biogenic methane source at Site F, consistent with the measured carbon isotope signature of methane (-61.1‰ to -58.7‰) sampled 1.5 m above the mussel beds. The only small offset between the δ13C signatures of the ascending methane and the authigenic carbonate at site F (as low as -55.3‰) suggests only minor mixing of the pore water with marine bicarbonate, which in turn may be used as an indicator for advective rather than diffusive seepage at this site. B. aduloides has much higher average δ13C values of -34.4‰ (n=9), indicating inorganic carbon (DIC) dissolved in epibenthic bottom water as its main carbon source. The DIC was apparently marine bicarbonate with a small contribution of 13C-depleted carbon from locally oxidized methane. The δ34S values of the two mussel species indicate that they used two different sulfur sources. B. platifrons (average δ34S = +6.4±2.6‰; n=36) used seawater sulfate mixed with isotopically light re-oxidized sulfide from the sulfate-dependent anaerobic oxidation of methane (AOM), while the sulfur source of B. aduloides (δ34S = -8.0±3.1‰; n=9) was AOM-derived sulfide used by its symbionts. δ15N values differed between the mussels, with B. platifrons having a wider range of on average slightly lower values (mean = +0.5±0.7‰, n=36) than B. aduloides (mean = +1.1±0.0‰). These values are significantly lower than δ15N values of South China Sea deep-sea sediments (+5‰ to +6‰), indicating that the organic nitrogen

  1. Three-dimensional approach using two coupled models for description of hydrological and biogeochemical processes at the catchment scale

    NASA Astrophysics Data System (ADS)

    Plesca, Ina; Kraft, Philipp; Haas, Edwin; Klatt, Steffen; Butterbach-Bahl, Klaus; Frede, Hans-Georg; Breuer, Lutz

    2014-05-01

    Hydrological and biogeochemical transport through changing landscapes has been well described during the past years in literature. However, the uncertainties of combined water quality and water quantity models are still challenging, both due to a lack in process understanding as well to spatiotemporal heterogeneity of environmental conditions driving the processes. In order to reduce the uncertainty in water quality and runoff predictions at the catchment scale, a variety of different model approaches from empirical-conceptual to fully physical and process based models have been developed. In this study we present a new modelling approach for the investigation of hydrological processes and nutrient cycles, with a focus on nitrogen in a small catchment from Hessen, Germany. A hydrological model based on the model toolbox Catchment Modelling Framework (CMF) has been coupled with the process based biogeochemical model LandscapeDNDC. States, fluxes and parameters are exchanged between the models at high temporal and spatial resolution using the Python scripting language in order to obtain a 3-dimensional model application. The transport of water and nutrients through the catchment is modelled using a 3D Richards/Darcy approach for subsurface fluxes, a kinematic wave approach for surface runoff and a Penman-Monteith based calculation of evapotranspiration. Biogeochemical processes are modelled by Landscape-DNDC, including plant growth and biomass allocation, organic matter mineralisation, nitrification, denitrification and associated nitrous oxide emissions. The interactions and module connectivity between the two coupled models, as well as the model application on a 3.7 km² catchment with the runoff results and nitrogen quantification will be presented in this study.

  2. Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands

    SciTech Connect

    Berthrong, Sean T; Schadt, Christopher Warren; Pineiro, Gervasio; Jackson, Robert B

    2009-01-01

    Soil microbes are highly diverse and control most soil biogeochemical reactions. We examined how microbial functional genes and biogeochemical pools responded to the altered chemical inputs accompanying land use change. We examined paired native grasslands and adjacent Eucalyptus plantations (previously grassland) in Uruguay, a region that lacked forests before European settlement. Along with measurements of soil carbon, nitrogen, and bacterial diversity, we analyzed functional genes using the GeoChip 2.0 microarray, which simultaneously quantified several thousand genes involved in soil carbon and nitrogen cycling. Plantations and grassland differed significantly in functional gene profiles, bacterial diversity, and biogeochemical pool sizes. Most grassland profiles were similar, but plantation profiles generally differed from those of grasslands due to differences in functional gene abundance across diverse taxa. Eucalypts decreased ammonification and N fixation functional genes by 11% and 7.9% (P < 0.01), which correlated with decreased microbial biomass N and more NH{sub 4}{sup +} in plantation soils. Chitinase abundance decreased 7.8% in plantations compared to levels in grassland (P = 0.017), and C polymer-degrading genes decreased by 1.5% overall (P < 0.05), which likely contributed to 54% (P < 0.05) more C in undecomposed extractable soil pools and 27% less microbial C (P < 0.01) in plantation soils. In general, afforestation altered the abundance of many microbial functional genes, corresponding with changes in soil biogeochemistry, in part through altered abundance of overall functional gene types rather than simply through changes in specific taxa. Such changes in microbial functional genes correspond with altered C and N storage and have implications for long-term productivity in these soils.

  3. Urban pollution of sediments: Impact on the physiology and burrowing activity of tubificid worms and consequences on biogeochemical processes.

    PubMed

    Pigneret, M; Mermillod-Blondin, F; Volatier, L; Romestaing, C; Maire, E; Adrien, J; Guillard, L; Roussel, D; Hervant, F

    2016-10-15

    In urban areas, infiltration basins are designed to manage stormwater runoff from impervious surfaces and allow the settling of associated pollutants. The sedimentary layer deposited at the surface of these structures is highly organic and multicontaminated (mainly heavy metals and hydrocarbons). Only few aquatic species are able to maintain permanent populations in such an extreme environment, including the oligochaete Limnodrilus hoffmeisteri. Nevertheless, the impact of urban pollutants on these organisms and the resulting influence on infiltration basin functioning remain poorly studied. Thus, the aim of this study was to determine how polluted sediments could impact the survival, the physiology and the bioturbation activity of L. hoffmeisteri and thereby modify biogeochemical processes occurring at the water-sediment interface. To this end, we conducted laboratory incubations of worms, in polluted sediments from infiltration basins or slightly polluted sediments from a stream. Analyses were performed to evaluate physiological state and burrowing activity (X-ray micro-tomography) of worms and their influences on biogeochemical processes (nutrient fluxes, CO2 and CH4 degassing rates) during 30-day long experiments. Our results showed that worms exhibited physiological responses to cope with high pollution levels, including a strong ability to withstand the oxidative stress linked to contamination with heavy metals. We also showed that the presence of urban pollutants significantly increased the burrowing activity of L. hoffmeisteri, demonstrating the sensitivity and the relevance of such a behavioural response as biomarker of sediment toxicity. In addition, we showed that X-ray micro-tomography was an adequate technique for accurate and non-invasive three-dimensional investigations of biogenic structures formed by bioturbators. The presence of worms induced stimulations of nutrient fluxes and organic matter recycling (between +100% and 200% of CO2 degassing rate

  4. Urban pollution of sediments: Impact on the physiology and burrowing activity of tubificid worms and consequences on biogeochemical processes.

    PubMed

    Pigneret, M; Mermillod-Blondin, F; Volatier, L; Romestaing, C; Maire, E; Adrien, J; Guillard, L; Roussel, D; Hervant, F

    2016-10-15

    In urban areas, infiltration basins are designed to manage stormwater runoff from impervious surfaces and allow the settling of associated pollutants. The sedimentary layer deposited at the surface of these structures is highly organic and multicontaminated (mainly heavy metals and hydrocarbons). Only few aquatic species are able to maintain permanent populations in such an extreme environment, including the oligochaete Limnodrilus hoffmeisteri. Nevertheless, the impact of urban pollutants on these organisms and the resulting influence on infiltration basin functioning remain poorly studied. Thus, the aim of this study was to determine how polluted sediments could impact the survival, the physiology and the bioturbation activity of L. hoffmeisteri and thereby modify biogeochemical processes occurring at the water-sediment interface. To this end, we conducted laboratory incubations of worms, in polluted sediments from infiltration basins or slightly polluted sediments from a stream. Analyses were performed to evaluate physiological state and burrowing activity (X-ray micro-tomography) of worms and their influences on biogeochemical processes (nutrient fluxes, CO2 and CH4 degassing rates) during 30-day long experiments. Our results showed that worms exhibited physiological responses to cope with high pollution levels, including a strong ability to withstand the oxidative stress linked to contamination with heavy metals. We also showed that the presence of urban pollutants significantly increased the burrowing activity of L. hoffmeisteri, demonstrating the sensitivity and the relevance of such a behavioural response as biomarker of sediment toxicity. In addition, we showed that X-ray micro-tomography was an adequate technique for accurate and non-invasive three-dimensional investigations of biogenic structures formed by bioturbators. The presence of worms induced stimulations of nutrient fluxes and organic matter recycling (between +100% and 200% of CO2 degassing rate

  5. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

    PubMed Central

    Anantharaman, Karthik; Brown, Christopher T.; Hug, Laura A.; Sharon, Itai; Castelle, Cindy J.; Probst, Alexander J.; Thomas, Brian C.; Singh, Andrea; Wilkins, Michael J.; Karaoz, Ulas; Brodie, Eoin L.; Williams, Kenneth H.; Hubbard, Susan S.; Banfield, Jillian F.

    2016-01-01

    The subterranean world hosts up to one-fifth of all biomass, including microbial communities that drive transformations central to Earth's biogeochemical cycles. However, little is known about how complex microbial communities in such environments are structured, and how inter-organism interactions shape ecosystem function. Here we apply terabase-scale cultivation-independent metagenomics to aquifer sediments and groundwater, and reconstruct 2,540 draft-quality, near-complete and complete strain-resolved genomes that represent the majority of known bacterial phyla as well as 47 newly discovered phylum-level lineages. Metabolic analyses spanning this vast phylogenetic diversity and representing up to 36% of organisms detected in the system are used to document the distribution of pathways in coexisting organisms. Consistent with prior findings indicating metabolic handoffs in simple consortia, we find that few organisms within the community can conduct multiple sequential redox transformations. As environmental conditions change, different assemblages of organisms are selected for, altering linkages among the major biogeochemical cycles. PMID:27774985

  6. Biogeochemical processes governing exposure and uptake of organic pollutant compounds in aquatic organisms

    SciTech Connect

    Farrington, J.W. )

    1991-01-01

    This paper reviews current knowledge of biogeochemical cycles of pollutant organic chemicals in aquatic ecosystems with a focus on coastal ecosystems. There is a bias toward discussing chemical and geochemical aspects of biogeochemical cycles and an emphasis on hydrophobic organic compounds such as polynuclear aromatic hydrocarbons, polychlorinated biphenyls, and chlorinated organic compounds used as pesticides. The complexity of mixtures of pollutant organic compounds, their various modes of entering ecosystems, and their physical chemical forms are discussed. Important factors that influence bioavailability and disposition (e.g., organism-water partitioning, uptake via food, food web transfer) are reviewed. These factors included solubilities of chemicals; partitioning of chemicals between solid surfaces, colloids, and soluble phases; variables rates of sorption, desorption; and physiological status of organism. It appears that more emphasis on considering food as a source of uptake and bioaccumulation is important in benthic and epibenthic ecosystems when sediment-associated pollutants are a significant source of input to an aquatic ecosystem. Progress with mathematical models for exposure and uptake of contaminant chemicals is discussed briefly.

  7. Biogeochemical processes in the continental slope of Bay of Bengal: I. Bacterial solubilization of inorganic phosphate.

    PubMed

    Das, Surajit; Lyla, P S; Khan, S Ajmal

    2007-03-01

    Microorganisms play a vital role in the biogeochemical cycles of various marine environments, but studies on occurrence and distribution of such bacteria in the marine environment from India are meager. We studied the phosphate solubilizing property of bacteria from the deep sea sediment of Bay of Bengal, India, to understand their role in phosphorous cycle (and thereby the benthic productivity of the deep sea environment). Sediment samples were obtained from 33 stations between 10 degrees 36'N-20 degrees 01' N and 79 degrees 59' E-87 degrees 30' E along 11 transects at 3 different depths i.e. ca. 200 m, 500 m, 1000 m in each transect. Total heterotrophic bacterial (THB) counts ranged from 0.42 to 37.38 x 10(4) CFU g(-1) dry sediment weight. Of the isolates tested, 7.57% showed the phosphate solubilizing property. The phosphate solubilizing bacterial genera were Pseudomonas, Bacillus, Vibrio, Alcaligenes, Micrococcus, Corynebacterium and Flavobacterium. These strains are good solubilizers of phosphates which ultimately may play a major role in the biogeochemical cycle and the benthic productivity of the Exclusive Economic Zone (EEZ) of Bay of Bengal, because this enzyme is important for the slow, but steady regeneration of phosphate and organic carbon in the deep sea. PMID:18457109

  8. Biogeochemical processes governing exposure and uptake of organic pollutant compounds in aquatic organisms.

    PubMed Central

    Farrington, J W

    1991-01-01

    This paper reviews current knowledge of biogeochemical cycles of pollutant organic chemicals in aquatic ecosystems with a focus on coastal ecosystems. There is a bias toward discussing chemical and geochemical aspects of biogeochemical cycles and an emphasis on hydrophobic organic compounds such as polynuclear aromatic hydrocarbons, polychlorinated biphenyls, and chlorinated organic compounds used as pesticides. The complexity of mixtures of pollutant organic compounds, their various modes of entering ecosystems, and their physical chemical forms are discussed. Important factors that influence bioavailability and disposition (e.g., organism-water partitioning, uptake via food, food web transfer) are reviewed. These factors include solubilities of chemicals; partitioning of chemicals between solid surfaces, colloids, and soluble phases; variables rates of sorption, desorption; and physiological status of organism. It appears that more emphasis on considering food as a source of uptake and bioaccumulation is important in benthic and epibenthic ecosystems when sediment-associated pollutants are a significant source of input to an aquatic ecosystem. Progress with mathematical models for exposure and uptake of contaminant chemicals is discussed briefly. PMID:1904812

  9. Biogeochemical processes in the continental slope of Bay of Bengal: I. Bacterial solubilization of inorganic phosphate.

    PubMed

    Das, Surajit; Lyla, P S; Khan, S Ajmal

    2007-03-01

    Microorganisms play a vital role in the biogeochemical cycles of various marine environments, but studies on occurrence and distribution of such bacteria in the marine environment from India are meager. We studied the phosphate solubilizing property of bacteria from the deep sea sediment of Bay of Bengal, India, to understand their role in phosphorous cycle (and thereby the benthic productivity of the deep sea environment). Sediment samples were obtained from 33 stations between 10 degrees 36'N-20 degrees 01' N and 79 degrees 59' E-87 degrees 30' E along 11 transects at 3 different depths i.e. ca. 200 m, 500 m, 1000 m in each transect. Total heterotrophic bacterial (THB) counts ranged from 0.42 to 37.38 x 10(4) CFU g(-1) dry sediment weight. Of the isolates tested, 7.57% showed the phosphate solubilizing property. The phosphate solubilizing bacterial genera were Pseudomonas, Bacillus, Vibrio, Alcaligenes, Micrococcus, Corynebacterium and Flavobacterium. These strains are good solubilizers of phosphates which ultimately may play a major role in the biogeochemical cycle and the benthic productivity of the Exclusive Economic Zone (EEZ) of Bay of Bengal, because this enzyme is important for the slow, but steady regeneration of phosphate and organic carbon in the deep sea.

  10. Spatial patterns in soil biogeochemical process rates along a Louisiana wetland salinity gradient in the Barataria Bay estuarine system

    NASA Astrophysics Data System (ADS)

    Roberts, B. J.; Rich, M. W.; Sullivan, H. L.; Bledsoe, R.; Dawson, M.; Donnelly, B.; Marton, J. M.

    2014-12-01

    Louisiana has the highest rates of coastal wetland loss in the United States. In addition to being lost, Louisiana wetlands experience numerous other environmental stressors including changes in salinity regime (both increases from salt water intrusion and decreases from the creation of river diversions) and climate change induced changes in vegetation (e.g. the northward expansion of Avicennia germinans (black mangrove) into salt marshes). In this study, we examined how these changes might influence biogeochemical process rates important in regulating carbon balance and the cycling, retention, and removal of nutrients in Louisiana wetlands. Specifically, we measured net soil greenhouse gas fluxes and collected cores for the determination of rates of greenhouse gas production, denitrification potential, nitrification potential, iron reduction, and phosphorus sorption from surface (0-5cm) and subsurface (10-15cm) depths for three plots in each of 4 sites along the salinity gradient: a freshwater marsh site, a brackish (7 ppt) marsh site, a salt marsh (17 ppt), and a Avicennia germinans stand (17 ppt; adjacent to salt marsh site) in the Barataria Bay estuarine system. Most biogeochemical processes displayed similar spatial patterns with salt marsh rates being lower than rates in freshwater and/or brackish marsh sites and not having significantly different rates than in Avicennia germinans stands. Rates in surface soils were generally higher than in subsurface soils. These patterns were generally consistent with spatial patterns in soil properties with soil water content, organic matter quantity and quality, and extractable nutrients generally being higher in freshwater and brackish marsh sites than salt marsh and Avicennia germinans sites, especially in surface soils. These spatial patterns suggest that the ability of coastal wetlands to retain and remove nutrients might change significantly in response to future climate changes in the region and that these

  11. Dynamic modeling of nitrogen losses in river networks unravels the coupled effects of hydrological and biogeochemical processes

    USGS Publications Warehouse

    Alexander, R.B.; Böhlke, J.K.; Boyer, E.W.; David, M.B.; Harvey, J.W.; Mulholland, P.J.; Seitzinger, S.P.; Tobias, C.R.; Tonitto, C.; Wollheim, W.M.

    2009-01-01

    The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly

  12. Hybrid Multiscale Simulation of Hydrologic and Biogeochemical Processes in the River-Groundwater Interaction Zone

    NASA Astrophysics Data System (ADS)

    Yang, X.; Scheibe, T. D.; Chen, X.; Hammond, G. E.; Song, X.

    2015-12-01

    The zone in which river water and groundwater mix plays an important role in natural ecosystems as it regulates the mixing of nutrients that control biogeochemical transformations. Subsurface heterogeneity leads to local hotspots of microbial activity that are important to system function yet difficult to resolve computationally. To address this challenge, we are testing a hybrid multiscale approach that couples models at two distinct scales, based on field research at the U. S. Department of Energy's Hanford Site. The region of interest is a 400 x 400 x 20 m macroscale domain that intersects the aquifer and the river and contains a contaminant plume. However, biogeochemical activity is high in a thin zone (mud layer, <1 m thick) immediately adjacent to the river. This microscale domain is highly heterogeneous and requires fine spatial resolution to adequately represent the effects of local mixing on reactions. It is not computationally feasible to resolve the full macroscale domain at the fine resolution needed in the mud layer, and the reaction network needed in the mud layer is much more complex than that needed in the rest of the macroscale domain. Hence, a hybrid multiscale approach is used to efficiently and accurately predict flow and reactive transport at both scales. In our simulations, models at both scales are simulated using the PFLOTRAN code. Multiple microscale simulations in dynamically defined sub-domains (fine resolution, complex reaction network) are executed and coupled with a macroscale simulation over the entire domain (coarse resolution, simpler reaction network). The objectives of the research include: 1) comparing accuracy and computing cost of the hybrid multiscale simulation with a single-scale simulation; 2) identifying hot spots of microbial activity; and 3) defining macroscopic quantities such as fluxes, residence times and effective reaction rates.

  13. Emotional processing affects movement speed.

    PubMed

    Hälbig, Thomas D; Borod, Joan C; Frisina, Pasquale G; Tse, Winona; Voustianiouk, Andrei; Olanow, C Warren; Gracies, Jean-Michel

    2011-09-01

    Emotions can affect various aspects of human behavior. The impact of emotions on behavior is traditionally thought to occur at central, cognitive and motor preparation stages. Using EMG to measure the effects of emotion on movement, we found that emotional stimuli differing in valence and arousal elicited highly specific effects on peripheral movement time. This result has conceptual implications for the emotion-motion link and potentially practical implications for neurorehabilitation and professional environments where fast motor reactions are critical.

  14. Autonomous Studies of Coupled Physical-Biogeochemical Processes- Lessons from NAB08 and Prospects for the Future

    NASA Astrophysics Data System (ADS)

    Lee, Craig; D'Asaro, Eric; Perry, Mary Jane

    2013-04-01

    Motivated by the increasing application of autonomous sensors to physical, biological and biogeochemical investigations at the submesoscale, we examine techniques developed during the 2008 North Atlantic Bloom Experiment (NAB08), review successes, failures, and lessons learned, and offer perspectives on how these approaches might evolve in response to near-term shifts in scientific goals and technological advances. NAB08 exploited the persistence of autonomous platforms coupled with the extensive capabilities of a ship-based sampling program to investigate the patch-scale physics, biogeochemistry and community dynamics of a spring phytoplankton bloom. Autonomous platforms (Seagliders following a heavily-instrumented Lagrangian float) collected measurements in a quasi-Lagrangian frame, beginning before bloom initiation and extending well past its demise. This system of autonomous instruments resolved variability at the patch scale while also providing the persistence needed to follow bloom evolution. Biological and biogeochemical measurements were conducted from R/V Knorr during the bloom. An aggressive protocol for sensor calibration and proxy building bridged the ship-based and autonomous efforts, leveraging the intensive but sparse ship-based measurements onto the much more numerous autonomous observations. The combination of sampling in the patch-following frame, persistent, autonomous surveys and focused, aggressive calibration and proxy building produced robust, quantitative estimates of physical and biogeochemical processes. For example, budgets of nitrate, dissolved oxygen and particulate organic carbon (POC) following the patch were used to estimate net community production (NCP) and apparent POC export. Net community production was 805 mmol C?m-2 during the main bloom, with apparent POC export of 564 mmol C?m-2 and 282 mmol C?m-2 lost due to net respiration (70%) and apparent export (30%) on the day following bloom termination. Thus, POC export of roughly

  15. Affect, Behavioural Schemas and the Proving Process

    ERIC Educational Resources Information Center

    Selden, Annie; McKee, Kerry; Selden, John

    2010-01-01

    In this largely theoretical article, we discuss the relation between a kind of affect, behavioural schemas and aspects of the proving process. We begin with affect as described in the mathematics education literature, but soon narrow our focus to a particular kind of affect--nonemotional cognitive feelings. We then mention the position of feelings…

  16. Ozone and Nitrogen Deposition as Modifiers of Biogeochemical Fluxes and Processes in California Forests

    NASA Astrophysics Data System (ADS)

    Fenn, M. E.

    2011-12-01

    The combined effects of ozone and N deposition results in major perturbations of C and N cycling in forests of southern and central California. Increased shoot:root ratios of the major trees species, N-stimulation of aboveground growth, and premature foliar abscission result in greater aboveground C and N pools. Fire suppression exacerbates these perturbations and provides the opportunity for chronic N deposition to further increase the stand densification problem. Long-term litter decomposition rates are retarded by N enrichment which contributes further to litter accumulation in the forest floor. Stage 3 of N saturation in California mixed conifer forests occurs as chronic N deposition, in conjunction with co-occurring ozone effects, decreases fine root biomass, interferes with stomatal control, and increases the susceptibility of ponderosa pine trees to drought stress and bark beetle attack, leading to increased stand mortality. Hot moments of N transfers from canopy to the forest floor occur during precipitation events that follow long dry periods, but particularly during fog events. During initial soil wet up, pulses of NO and N2O emissions from the forest floor occur. Streamwater losses of nitrate are highest following storms preceded by dry periods, but also during peak runoff, typically in February and March. However, major losses of accumulated N occur during and after fire events. However, ecosystem N budgets, biogeochemical modeling studies and experimental burns in N-saturated chaparral catchments in southern California demonstrate that symptoms of N excess are not easily reversed by N release in and following fire. Even with decreased N deposition, momentum for elevated N losses from California forests would likely continue, driven by actively nitrifying soils and increased N content of litter and soil organic matter. Initial studies show that during peak runoff, as much as 20-40% of runoff nitrate in some catchments is throughput of unassimilated

  17. Stormwater sediment and bioturbation influences on hydraulic functioning, biogeochemical processes, and pollutant dynamics in laboratory infiltration systems.

    PubMed

    Nogaro, Geraldine; Mermillod-Blondin, Florian

    2009-05-15

    Stormwater sediments that accumulate at the surface of infiltration basins reduce infiltration efficiencies by physical clogging and produce anoxification in the subsurface. The present study aimed to quantify the influence of stormwater sediment origin (urban vs industrial catchments) and the occurrence of bioturbators (tubificid worms) on the hydraulic functioning, aerobic/anaerobic processes, and pollutant dynamics in stormwater infiltration systems. In laboratory sediment columns, effects of stormwater sediments and tubificids were examined on hydraulic conductivity, microbial processes, and pollutant releases. Significant differences in physical (particle size distribution) and chemical characteristics betoveen the two stormwater sediments led to distinct effects of these sediments on hydraulic and biogeochemical processes. Bioturbation by tubificid worms could increase the hydraulic conductivity in stormwater infiltration columns, but this effect depended on the characteristics of the stormwater sediments. Bioturbation-driven increases in hydraulic conductivity stimulated aerobic microbial processes and enhanced vertical fluxes of pollutants in the sediment layer. Our results showed that control of hydraulic functioning by stormwater sediment characteristics and/ or biological activities (such as bioturbation) determined the dynamics of organic matter and pollutants in stormwater infiltration devices.

  18. Biogeochemical and hydrologic processes controlling mercury cycling in Great Salt Lake, Utah

    NASA Astrophysics Data System (ADS)

    Naftz, D.; Kenney, T.; Angeroth, C.; Waddell, B.; Darnall, N.; Perschon, C.; Johnson, W. P.

    2006-12-01

    Great Salt Lake (GSL), in the Western United States, is a terminal lake with a highly variable surface area that can exceed 5,100 km2. The open water and adjacent wetlands of the GSL ecosystem support millions of migratory waterfowl and shorebirds from throughout the Western Hemisphere, as well as a brine shrimp industry with annual revenues exceeding 70 million dollars. Despite the ecologic and economic significance of GSL, little is known about the biogeochemical cycling of mercury (Hg) and no water-quality standards currently exist for this system. Whole water samples collected since 2000 were determined to contain elevated concentrations of total Hg (100 ng/L) and methyl Hg (33 ng/L). The elevated levels of methyl Hg are likely the result of high rates of SO4 reduction and associated Hg methylation in persistently anoxic areas of the lake at depths greater than 6.5 m below the water surface. Hydroacoustic equipment deployed in this anoxic layer indicates a "conveyor belt" flow system that can distribute methyl Hg in a predominantly southerly direction throughout the southern half of GSL (fig. 1, URL: http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs- AUG06.pdf). Periodic and sustained wind events on GSL may result in transport of the methyl Hg-rich anoxic water and bottom sediments into the oxic and biologically active regions. Sediment traps positioned above the anoxic brine interface have captured up to 6 mm of bottom sediment during cumulative wind-driven resuspension events (fig. 2, URL:http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs-AUG06.pdf). Vertical velocity data collected with hydroacoustic equipment indicates upward flow > 1.5 cm/sec during transient wind events (fig. 3, URL:http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs-AUG06.pdf). Transport of methyl Hg into the oxic regions of GSL is supported by biota samples. The median Hg concentration (wet weight) in brine shrimp increased seasonally from the spring to fall time period and is likely a

  19. Coupled hydrological and biogeochemical processes controlling variability of nitrogen species in streamflow during autumn in an upland forest

    NASA Astrophysics Data System (ADS)

    Sebestyen, Stephen D.; Shanley, James B.; Boyer, Elizabeth W.; Kendall, Carol; Doctor, Daniel H.

    2014-02-01

    Autumn is a season of dynamic change in forest streams of the northeastern United States due to effects of leaf fall on both hydrology and biogeochemistry. Few studies have explored how interactions of biogeochemical transformations, various nitrogen sources, and catchment flow paths affect stream nitrogen variation during autumn. To provide more information on this critical period, we studied (1) the timing, duration, and magnitude of changes to stream nitrate, dissolved organic nitrogen (DON), and ammonium concentrations; (2) changes in nitrate sources and cycling; and (3) source areas of the landscape that most influence stream nitrogen. We collected samples at higher temporal resolution for a longer duration than typical studies of stream nitrogen during autumn. This sampling scheme encompassed the patterns and extremes that occurred during base flow and stormflow events of autumn. Base flow nitrate concentrations decreased by an order of magnitude from 5.4 to 0.7 µmol L-1 during the week when most leaves fell from deciduous trees. Changes to rates of biogeochemical transformations during autumn base flow explained the low nitrate concentrations; in-stream transformations retained up to 72% of the nitrate that entered a stream reach. A decrease of in-stream nitrification coupled with heterotrophic nitrate cycling were primary factors in the seasonal nitrate decline. The period of low nitrate concentrations ended with a storm event in which stream nitrate concentrations increased by 25-fold. In the ensuing weeks, peak stormflow nitrate concentrations progressively decreased over closely spaced, yet similarly sized events. Most stormflow nitrate originated from nitrification in near-stream areas with occasional, large inputs of unprocessed atmospheric nitrate, which has rarely been reported for nonsnowmelt events. A maximum input of 33% unprocessed atmospheric nitrate to the stream occurred during one event. Large inputs of unprocessed atmospheric nitrate show

  20. Coupled hydrological and biogeochemical processes controlling variability of nitrogen species in streamflow during autumn in an upland forest

    USGS Publications Warehouse

    Sebestyen, Stephen D.; Shanley, James B.; Boyer, Elizabeth W.; Kendall, Carol; Doctor, Daniel H.

    2014-01-01

    Autumn is a season of dynamic change in forest streams of the northeastern United States due to effects of leaf fall on both hydrology and biogeochemistry. Few studies have explored how interactions of biogeochemical transformations, various nitrogen sources, and catchment flow paths affect stream nitrogen variation during autumn. To provide more information on this critical period, we studied (1) the timing, duration, and magnitude of changes to stream nitrate, dissolved organic nitrogen (DON), and ammonium concentrations; (2) changes in nitrate sources and cycling; and (3) source areas of the landscape that most influence stream nitrogen. We collected samples at higher temporal resolution for a longer duration than typical studies of stream nitrogen during autumn. This sampling scheme encompassed the patterns and extremes that occurred during base flow and stormflow events of autumn. Base flow nitrate concentrations decreased by an order of magnitude from 5.4 to 0.7 µmol L−1 during the week when most leaves fell from deciduous trees. Changes to rates of biogeochemical transformations during autumn base flow explained the low nitrate concentrations; in-stream transformations retained up to 72% of the nitrate that entered a stream reach. A decrease of in-stream nitrification coupled with heterotrophic nitrate cycling were primary factors in the seasonal nitrate decline. The period of low nitrate concentrations ended with a storm event in which stream nitrate concentrations increased by 25-fold. In the ensuing weeks, peak stormflow nitrate concentrations progressively decreased over closely spaced, yet similarly sized events. Most stormflow nitrate originated from nitrification in near-stream areas with occasional, large inputs of unprocessed atmospheric nitrate, which has rarely been reported for nonsnowmelt events. A maximum input of 33% unprocessed atmospheric nitrate to the stream occurred during one event. Large inputs of unprocessed atmospheric nitrate

  1. Are Changes in Biogeochemical or Hydrologic Processes Responsible for Increasing DOC Concentrations in Headwater Streams of Northeastern North America?

    NASA Astrophysics Data System (ADS)

    Burns, D. A.; Murdoch, P. S.

    2005-12-01

    The recent recognition of widespread and significant upward trends in dissolved organic carbon (DOC) concentrations in surface waters of northeastern North America and Europe has stimulated research to understand the cause of these trends. Several factors have been offered to explain these DOC trends including climate warming, chronic atmospheric nitrogen deposition, decreasing atmospheric sulfur deposition, and increasing surface water pH. Changes in these factors have acted to either increase the solubility of DOC or increase the rates of biogeochemical processes that generate labile carbon in the soil. Additionally, it is well known that rain events and snowmelt increase DOC concentrations in many surface waters through flushing along shallow flow paths where most labile carbon is stored. Changes in hydrologic flushing rates have generally not been explored as a possible explanation of these widely reported upward trends in DOC concentrations. Biscuit Brook, a 9.9 km2 catchment in the Catskill Mountains of New York has shown a significant increasing trend in DOC concentrations since 1992, consistent with other streams in this region. Stream chemistry has been monitored at Biscuit Brook on a weekly basis supplemented with event samples since 1983, providing a detailed data set with which to examine the causes of changes in DOC concentrations. Here, we examine the relative roles of climate warming, decreasing sulfate (SO42-) and nitrate (NO3-) concentrations, and changes in the frequency and size of hydrologic events on the long-term temporal pattern (1992 to 2004) of DOC concentrations in Biscuit Brook. DOC concentrations increased significantly in weekly samples collected primarily during low flow conditions. No similar trend was apparent in the high flow samples. Mean annual SO42- plus NO3- concentrations showed a strong inverse relation (r2 = 0.91, p < 0.01) to DOC concentrations, but these concentrations were not related to stream pH nor to air temperature

  2. Non-conservative behaviors of chromophoric dissolved organic matter in a turbid estuary: Roles of multiple biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Yang, Liyang; Guo, Weidong; Hong, Huasheng; Wang, Guizhi

    2013-11-01

    Chromophoric dissolved organic matter (CDOM) may show notable non-conservative behaviors in many estuaries due to a variety of biogeochemical processes. The partition between CDOM and chromophoric particulate organic matter (CPOM) was examined in the Jiulong Estuary (China) using absorption and fluorescence spectroscopy, which was also compared with microbial and photochemical degradations. The absorption coefficient of water-soluble CPOM (aCPOM(280)) at ambient Milli-Q water pH (6.1) ranged from 0.11 to 7.94 m-1 in the estuary and was equivalent to 5-101% of CDOM absorption coefficient. The aCPOM(280) correlated significantly with the concentration of suspended particulate matter and was highest in the bottom water of turbidity maximum zone. Absorption spectral slope (S275-295) and slope ratio (SR) correlated positively with salinity for both CPOM and CDOM, suggesting decreases in the average molecular weight with increasing salinity. The adsorption of CDOM to re-suspended sediments (at 500 mg L-1) within 2 h was equivalent to 4-26% of the initial aCDOM(280). The adsorption of CDOM to particles was less selective with respect to various CDOM constituents, while the microbial degradation resulted decreases in S275-295 and SR of CDOM and preferential removal of protein-like components. The partition between CPOM and CDOM represented a rapid and important process for the non-conservative behavior of CDOM in turbid estuaries.

  3. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    Dubinina, G A; Sorokina, A Iu

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation.

  4. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation. PMID:25507440

  5. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    Dubinina, G A; Sorokina, A Iu

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation. PMID:25423717

  6. Relating hyporheic fluxes, residence times, and redox-sensitive biogeochemical processes upstream of beaver dams

    USGS Publications Warehouse

    Briggs, Martin A.; Lautz, Laura; Hare, Danielle K.

    2013-01-01

    ¨hler number seemed to overestimate the actual transition as indicated by multiple secondary electron acceptors, illustrating the gradient nature of anaerobic transition. Temporal flux variability in low-flux morphologies generated a much greater range in hyporheic redox conditions compared to high-flux zones, and chemical responses to changing flux rates were consistent with those predicted from the empirical relationship between redox condition and residence time. The Raz tracer revealed that hyporheic flow paths have strong net aerobic respiration, particularly at higher residence time, but this reactive exchange did not affect the net stream signal at the reach scale.

  7. U(VI) reduction at the nano, meso and meter scale: concomitant transition from simpler to more complex biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Veeramani, H.; Hochella, M. F.

    2012-12-01

    Reduction of aqueous hexavalent U(VI) to the sparingly soluble nanoparticulate mineral uraninite [UO2] represents a promising strategy for the in situ immobilization of uranium in contaminated subsurface sediments and groundwater. Studies related to uranium reduction have been extensively carried out at various scales ranging from nano to meso to the meter scale with varying degrees of success. While nanoscale processes involving simple two-electron transfer reactions such as enzymatic microbial U(VI) reduction results in biogenic UO2 formation, mesoscale processes involving minerals and U(VI) are a step up in complexity and have shown varying results ranging from partial uranium reduction to the formation of mixed U(IV)/U(V) species. Although nano- and meso-scale biogeochemical processes have been helpful in predicting the contaminant dynamics at the meter scale, their occurrence is not necessarily apparent in soils and aquifers given the enormous volume of contaminated groundwater to be remediated, among other factors. The formation and long-term stability of biologically reduced uranium at the meter scale is also determined in addition by the complex interplay of aqueous geochemistry, hydrology, soil and sediment mineralogy and microbial community dynamics. For instance, indigenous subsurface microbes often encounter multiple electron acceptors in heterogeneous environments during biostimulation and can catalyze the formation of various reactive biogenic minerals. In such cases, abiotic interactions between U(VI) and reactive biogenic minerals is potentially important because the success of a remediation strategy is contingent upon the speciation of reduced uranium. This presentation will give an overview of uranium reduction ranging from simple nanoscale biological processes to increasingly complex meso and meter scale processes involving abiotic interactions between aqueous uranium and nano-biogenic minerals and the effect of mineralogy and aqueous

  8. Designing and interpreting laboratory experiments for hydrodynamical, biogeochemical, and ecological processes in rivers (Invited)

    NASA Astrophysics Data System (ADS)

    Packman, A. I.

    2009-12-01

    In this talk, I will articulate a general philosophy for the design of laboratory experiments for fluvial processes; discuss important concepts of scaling, scale limitation, and process coupling that should be considered in designing experiments and interpreting experimental results; and provide concrete examples of how this approach can be used to probe river mechanics, sedimentary biogeochemistry, benthic/hyporheic ecology, and downstream migration of reactive solutes and particles. It is challenging to design laboratory experiments to probe fluvial processes because river systems show extremely strong interactions over a wide range of spatial and temporal scales. Biological and ecological processes are especially difficult to study in the laboratory because they are influenced by a wide range of system conditions, and we do not currently have a strong theoretical basis to quantitatively generalize experimental observations. Further, many seemingly basic and invariant chemical and biological properties - such as sorption coefficients, reaction rate constants, respiration rates, and nutrient uptake rates - change over space and time in fluvial systems because these environments are highly dynamic over a wide range of temporal scales, show strong longitudinal connectivity, and have strong heterogeneity in the surrounding and underlying sediments. Laboratory studies can be used to systematically investigate these effects, thereby providing considerable insight into generally important controlling mechanisms, with the caveat that larger-scale drivers and process interactions must be considered when translating the results to the field. Laboratory experiments can best be targeted to discriminate alternate hypotheses regarding important governing processes, and to independently test the effects of each important variable. Once this information is obtained, it should be codified in the form of quantitative, theoretical relationships that can be subsequently evaluated in

  9. Integrated Biogeochemical and Hydrologic Processes Driving Arsenic Release from Shallow Sediments to Groundwaters of the Mekong Delta

    SciTech Connect

    Kocar, Benjamin D.; Polizzotto, Matthew L.; Benner, Shawn G.; Ying, Samantha C.; Ung, Mengieng; Ouch, Kagna; Samreth, Sopheap; Suy, Bunseang; Phan, Kongkea; Sampson, Michael; Fendorf, Scott

    2008-11-01

    Arsenic is contaminating the groundwater of Holocene aquifers throughout South and Southeast Asia. To examine the biogeochemical and hydrological processes influencing dissolved concentrations and transport of As within soils/sediments in the Mekong River delta, a ~50 km₂ field site was established near Phnom Penh, Cambodia, where aqueous As concentrations are dangerously high and where groundwater retrieval for irrigation is minimal. Dissolved As concentrations vary spatially, ranging up to 1300 µg/L in aquifer groundwater and up to 600 µg/L in surficial clay pore water. Groundwaters with high As concentrations are reducing with negligible dissolved O₂ and high concentrations of Fe(II), NH⁺₄ , and dissolved organic C. Within near-surface environments, these conditions are most pronounced in sediments underlying permanent wetlands, often found within oxbow channels near the Mekong River. There, labile C, co-deposited with As-bearing Fe (hydr)oxides under reducing conditions, drives the reductive mobilization (inclusive of Fe and As reduction) of As. Here, conditions are described under which As is mobilized from these sediments, and near-surface As release is linked to aquifer contamination over long time periods (100s to 1000s of years). Site biogeochemistry is coupled with extensive hydrologic measurements, and, accordingly, a comprehensive interpretation of spatial As release and transport within a calibrated hydraulic flow-field is provided of an As-contaminated aquifer that is representative of those found throughout South and Southeast Asia.

  10. Potential for real-time understanding of coupled hydrologic and biogeochemical processes in stream ecosystems: Future integration of telemetered data with process models for glacial meltwater streams

    NASA Astrophysics Data System (ADS)

    McKnight, Diane M.; Cozzetto, Karen; Cullis, James D. S.; Gooseff, Michael N.; Jaros, Christopher; Koch, Joshua C.; Lyons, W. Berry; Neupauer, Roseanna; Wlostowski, Adam

    2015-08-01

    While continuous monitoring of streamflow and temperature has been common for some time, there is great potential to expand continuous monitoring to include water quality parameters such as nutrients, turbidity, oxygen, and dissolved organic material. In many systems, distinguishing between watershed and stream ecosystem controls can be challenging. The usefulness of such monitoring can be enhanced by the application of quantitative models to interpret observed patterns in real time. Examples are discussed primarily from the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica. Although the Dry Valley landscape is barren of plants, many streams harbor thriving cyanobacterial mats. Whereas a daily cycle of streamflow is controlled by the surface energy balance on the glaciers and the temporal pattern of solar exposure, the daily signal for biogeochemical processes controlling water quality is generated along the stream. These features result in an excellent outdoor laboratory for investigating fundamental ecosystem process and the development and validation of process-based models. As part of the McMurdo Dry Valleys Long-Term Ecological Research project, we have conducted field experiments and developed coupled biogeochemical transport models for the role of hyporheic exchange in controlling weathering reactions, microbial nitrogen cycling, and stream temperature regulation. We have adapted modeling approaches from sediment transport to understand mobilization of stream biomass with increasing flows. These models help to elucidate the role of in-stream processes in systems where watershed processes also contribute to observed patterns, and may serve as a test case for applying real-time stream ecosystem models.

  11. Isotopic order, biogeochemical processes, and earth history - Goldschmidt lecture, Davos, Switzerland, August 2002

    NASA Astrophysics Data System (ADS)

    Hayes, John M.

    2004-04-01

    The impetus to interpret carbon isotopic signals comes from an understanding of isotopic fractionations imposed by living organisms. That understanding rests in turn on studies of enzymatic isotope effects, on fruitful concepts of isotopic order, and on studies of the distribution of 13C both between and within biosynthetic products. In sum, these studies have shown that the isotopic compositions of biological products are governed by reaction kinetics and by pathways of carbon flow. Isotopic compositions of individual compounds can indicate specific processes or environments. Examples include biomarkers which record the isotopic compositions of primary products in aquatic communities, which indicate that certain bacteria have used methane as a carbon source, and which show that some portions of marine photic zones have been anaerobic. In such studies, the combination of structural and isotopic lines of evidence reveals relationships between compounds and leads to process-related thinking. These are large steps. Reconstruction of the sources and histories of molecular fossils redeems much of the early promise of organic geochemistry by resolving and clarifying paleoenviron-mental signals. In turn, contemplation of this new information is driving geochemists to study microbial ecology and evolution, oceanography, and sedimentology.

  12. Development of advanced process-based model towards evaluation of boundless biogeochemical cycles in terrestrial-aquatic continuum

    NASA Astrophysics Data System (ADS)

    Nakayama, Tadanobu; Maksyutov, Shamil

    2014-05-01

    Recent research shows inland water may play some role in continental biogeochemical cycling though its contribution has remained uncertain due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local, regional and global scales, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes. In this study, NICE was extended to evaluate global hydrologic cycle by using various global datasets. The simulated result agreed reasonably with that in the previous research (Fan et al., 2013) and extended to clarify further eco-hydrological process in global scale. Then, NICE was further developed to incorporate the biogeochemical cycle including the reaction between inorganic and organic carbons (DOC, POC, DIC, pCO2, etc.) in the biosphere (terrestrial and aquatic ecosystems including surface water and groundwater). The model simulated the carbon cycle, for example, CO2 evasion from inland water in global scale, which is relatively in good agreement in that estimated by empirical relation using the previous pCO2 data (Aufdenkampe et al., 2011; Global River Chemistry Database, 2013). This simulation system would play important role in identification of full greenhouse gas balance of the biosphere and spatio-temporal hot spots in boundless biogeochemical cycle (Cole et al. 2007; Frei et al. 2012). References; Aufdenkampe, A.K., et al., Front. Ecol. Environ., doi:10.1890/100014, 2011. Battin, T.J., et al., Nat. Geosci., 2, 598-600, 2009. Cole, J.J. et al., Ecosystems, doi:10.1007/s10021-006-9013-8, 2007. Fan, Y. et al

  13. Affective processing in bilingual speakers: disembodied cognition?

    PubMed

    Pavlenko, Aneta

    2012-01-01

    A recent study by Keysar, Hayakawa, and An (2012) suggests that "thinking in a foreign language" may reduce decision biases because a foreign language provides a greater emotional distance than a native tongue. The possibility of such "disembodied" cognition is of great interest for theories of affect and cognition and for many other areas of psychological theory and practice, from clinical and forensic psychology to marketing, but first this claim needs to be properly evaluated. The purpose of this review is to examine the findings of clinical, introspective, cognitive, psychophysiological, and neuroimaging studies of affective processing in bilingual speakers in order to identify converging patterns of results, to evaluate the claim about "disembodied cognition," and to outline directions for future inquiry. The findings to date reveal two interrelated processing effects. First-language (L1) advantage refers to increased automaticity of affective processing in the L1 and heightened electrodermal reactivity to L1 emotion-laden words. Second-language (L2) advantage refers to decreased automaticity of affective processing in the L2, which reduces interference effects and lowers electrodermal reactivity to negative emotional stimuli. The differences in L1 and L2 affective processing suggest that in some bilingual speakers, in particular late bilinguals and foreign language users, respective languages may be differentially embodied, with the later learned language processed semantically but not affectively. This difference accounts for the reduction of framing biases in L2 processing in the study by Keysar et al. (2012). The follow-up discussion identifies the limits of the findings to date in terms of participant populations, levels of processing, and types of stimuli, puts forth alternative explanations of the documented effects, and articulates predictions to be tested in future research. PMID:23163422

  14. New HYDRUS Modules for Simulating Preferential Flow, Colloid-Facilitated Contaminant Transport, and Various Biogeochemical Processes in Soils

    NASA Astrophysics Data System (ADS)

    Simunek, J.; Sejna, M.; Jacques, D.; Langergraber, G.; Bradford, S. A.; van Genuchten, M. Th.

    2012-04-01

    We have dramatically expanded the capabilities of the HYDRUS (2D/3D) software package by developing new modules to account for processes not available in the standard HYDRUS version. These new modules include the DualPerm, C-Hitch, HP2/3, Wetland, and Unsatchem modules. The dual-permeability modeling approach of Gerke and van Genuchten [1993] simulating preferential flow and transport is implemented into the DualPerm module. Colloid transport and colloid-facilitated solute transport, the latter often observed for many contaminants, such as heavy metals, radionuclides, pharmaceuticals, pesticides, and explosives [Šimůnek et al., 2006] are implemented into the C-Hitch module. HP2 and HP3 are the two and three-dimensional alternatives of the HP1 module, currently available with HYDRUS-1D [Jacques and Šimůnek, 2005], that couple HYDRUS flow and transport routines with the generic geochemical model PHREEQC of Parkhurst and Appelo [1999]. The Wetland module includes two alternative approaches (CW2D of Langergraber and Šimůnek [2005] and CWM1 of Langergraber et al. [2009]) for modeling aerobic, anaerobic, and anoxic biogeochemical processes in natural and constructed wetlands. Finally, the Unsatchem module simulates the transport and reactions of major ions in a soil profile. Brief descriptions and an application of each module will be presented. Except for HP3, all modules simulate flow and transport processes in two-dimensional transport domains. All modules are fully supported by the HYDRUS graphical user interface. Further development of these modules, as well as of several other new modules (such as Overland), is still envisioned. Continued feedback from the research community is encouraged.

  15. Physical and biogeochemical processes controlling particle fluxes variability and carbon export in the Southern Adriatic

    NASA Astrophysics Data System (ADS)

    Turchetto, M.; Boldrin, A.; Langone, L.; Miserocchi, S.

    2012-08-01

    In the framework of the Vector Project downward particle fluxes have been measured in a station located in the centre of the South Adriatic Pit from November 2006 to August 2008. Sediment trap samples were collected at two different depths, below the photic layer (168 m) and near the bottom (1174 m), and analysed for total mass flux, for total and organic carbon, total nitrogen, carbonate, stable isotope of organic carbon (δ13Corg) and biogenic silica contents. The results have been integrated and compared with data obtained from previous research projects, carried out in the Southern Adriatic area in 1994-1995 and 1997-1998. Fluxes of particulate matter showed high seasonal and interannual variability, with maximum values in late winter-spring season. The organic carbon flux, followed the same seasonal trend, with higher values below the photic zone, and peaks in spring, related to blooms of silica and/or carbonates phytoplankton organisms (e.g., diatoms, coccolithophorids). The organic carbon export from the photic layer was of 5.2 and 2.1 g C m-2 y-1 reached the bottom. Climatological cycles and, in particular, the maximum depth of the convective vertical mixing determined the high fluxes measured in 1998 and in 2008 springs. Total mass fluxes measured at the bottom trap were twofold those measured below the photic layer, and showed a high lithogenic fraction, highlighting the presence of advective processes that appear particularly active in the area. These processes can be correlated with the spreading of dense waters coming from the north and central Adriatic, generally observed in spring. The elemental and isotopic composition of bottom trap samples, resulted similar to that of samples collected in the south-western Adriatic slope, corroborating the assumption that lateral advection other than vertical input were contributing to bottom particle fluxes.

  16. Distinguishing biogeochemical processes influencing phosphorus dynamics in oxidizing and desiccating mud deposits from a freshwater wetland system

    NASA Astrophysics Data System (ADS)

    Saaltink, Rémon; Dekker, Stefan C.; Wassen, Martin J.; Griffioen, Jasper

    2015-04-01

    Focus and aim: Currently, lake Markermeer (680 km2) provides poor environmental conditions for the development of flora and fauna due to a thick fluffy layer that prevails at the lake's bed. To improve the conditions in the lake, large wetlands will be built from this fluffy layer, possibly mixed with sand or with the underlying Southern Sea deposit. The aim of this study is to distinguish biogeochemical processes influencing phosphorus dynamics in porewater during oxidation and desiccation of mud deposits from this lake. We focus on three important aspects that potentially influence these processes: granulometry, sediment type and modification by plants. Material and methods: A greenhouse experiment was conducted with three types of sediment that potentially will function as building material for the islands: fluffy mud (FM), sandy mud (SM) and Southern Sea deposit (SSD). Reed (Phragmites australis) was planted in half of the pots to distinguish influence by plants. For six months, the porewater-, soil- and plant quality was monitored to determine important biogeochemical processes. Variables measured from the porewater include: Cl-, NO2-, NO3-, PO43- and SO42- (IC); Ca, Fe, K, Mn, Na, P, Si, Sr (ICP-OES); as well as Fe2+, pH, alkalinity and EC. A phosphorus fractionation was carried out on the sediment to determine the phosphorus pools and the major elements of the sediments were determined following an aqua regia destruction using ICP-OES. Plant tissue was analysed for N, P, K and C content as well as the above- and belowground biomass. Results and discussion: It was found that sulfate production was the most important process influencing phosphorus availability in these soils. Due to oxidation processes in the mud, sulfate (SO42-) concentrations rose drastically in porewater from 100 ppm at the beginning of the experiment to well over 2000 ppm at the end of the experiment. This effect was strongest in SSD soils, likely due to higher presence of pyrite that gets

  17. Treatment of oil and grease in produced water by a pilot-scale constructed wetland system using biogeochemical processes.

    PubMed

    Pardue, Michael J; Castle, James W; Rodgers, John H; Huddleston, George M

    2014-05-01

    Constructed wetland treatment systems (CWTSs) can effectively remove many constituents that limit beneficial use of oilfield produced water. The objectives of this investigation were: (1) to assess the effect of mass loadings of oil and grease (O & G) on treatment performance in pilot-scale subsurface flow and free water surface CWTS series having sequential reducing and oxidizing cells, and (2) to evaluate effects on treatment performance of adding a pilot-scale oil-water separator. Increase in O & G mass loading from 5 to 20 mg min(-1) caused decreases in both dissolved oxygen concentration and sediment redox potential, which affected treatment performance. Biogeochemical pathways for removal of O & G, iron, and manganese operate under oxidizing conditions, and removal rate coefficients for these constituents decreased (0.905-0.514 d(-1) for O & G, 0.773-0.452 d(-1) for iron, and 0.970-0.518 d(-1) for manganese) because greater mass loading of O & G promoted reducing conditions. With increased mass loading, removal rate coefficients for nickel and zinc increased from 0.074 to 0.565 d(-1) and from 0.196 to 1.08 d(-1), respectively. Although the sequential reducing and oxidizing cells in the CWTS were very effective in treating the targeted constituents, an oil-water separator was added prior to wetland cells to enhance O & G removal at high inflow concentration (100 mg L(-1)). The oil-water separator removed approximately 50% of the O & G, and removal extents and efficiencies approximated those observed at 50 mg L(-1) inflow concentration during treatment without an oil-water separator.

  18. The Precambrian Biogeochemical Carbon Isotopic Record: Contributions of Thermal Versus Biological Processes

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    Superplumes offer a new approach for understanding global C cycles. Isotopes help to discern the impacts of geological, environmental and biological processes ujpun the evolution of these cycles. For example, C-13/C-12 values of coeval sedimentary organics and carbonates give global estimates of the fraction of C buried as organics (Forg), which today lies near 0.2. Before Oxygenic photosynthesis arose, our biosphere obtained reducing power for biosynthesis solely from thermal volatiles and rock alteration. Thus Forg was dominated by the mantle redox state, which has remained remarkably constant for greater than Gy. Recent data confirm that the long-term change in Forg had been small, indicating that the mantle redox buffer remains important even today. Oxygenic photosynthesis enabled life to obtain additional reducing power by splitting the water molecule. Accordingly, biological organic production rose above the level constrained by the mantle-derived flux of reduced species. For example, today, chemoautotrophs harvesting energy from hydrothermal emanations can synthesize at most between 0.2 x 10(exp 12) and 2x 10(exp 12) mol C yr-1 of organic C globally. In contrast, global photosynthetic productivity is estimated at 9000 x 10(exp 12) mol C yr-1. Occasionally photosynthetic productivity did contribute to dramatically -elevated Forg values (to 0.4 or more) as evidenced by very high carbonate C-13/C-12. The interplay between biological, tectonic and other environmental factors is illustrated by the mid-Archean to mid-Proterozoic isotopic record. The relatively constant C-13/C-12 values of Archean carbonates support the view that photosynthetically-driven Forg increases were not yet possible. In contrast, major excursions in C-13/C-12, and thus also in Forg, during the early Proterozoic confirmed the global importance of oxygenic photosynthesis by that time. Remarkably, the superplume event at 1.9 Ga did not trigger another major Forg increase, despite the

  19. Accumulation of nutrients in soils affected by perennial colonies of piscivorous birds with reference to biogeochemical cycles of elements.

    PubMed

    Ligeza, Slawomir; Smal, Halina

    2003-07-01

    The accumulation of selected N, K, and P forms in soils within three perennial colonies of black cormorant (Phalacrocorax carbo sinensis) and grey heron (Ardea cinerea) located in northern and eastern Poland were investigated. Soil samples were collected beneath the nests from the most representative for each colony plots. Control samples were taken outside the colonies within sites adjacent to the nesting areas but not affected by bird excrement. From each genetic horizon (20 horizons) in soil profiles, a cumulative sample of about 25-30 kg of soil was taken for analysis. Nitrogen by Kjeldahl, ammonium ions (N(NH(4))), nitrates (N(NO(3))), exchangeable potassium (K(ex)), available potassium (K(av)), and available phosphorus (P(av)) were determined. The soils affected by birds demonstrated a very strong enrichment with N, K, and P in comparison to the control sites, especially in the topsoil horizons. The content of N(NH(4)) in individual soil horizons from the colonies was from 1.7 to 10.1 times higher than the respective control, N(NO(3)) from 2.9 to 215.7, K(ex) from 2.0 to 35.1, K(av) from 1.1 to 48.1, and P(av) in the range from 2.4 to 53.0 times. The highest increment of chemical elements was noticeable in the soils of territories inhabited by cormorants and the least in forest occupied by herons. Some relationships between soil texture and accumulation of biogenic nutrients were determined. Clay loam soil showed the greatest enrichment with analysed forms of elements with the exception of N(NH(4)).

  20. Microbial Analysis of Australian Dry Lake Cores; Analogs For Biogeochemical Processes

    NASA Astrophysics Data System (ADS)

    Nguyen, A. V.; Baldridge, A. M.; Thomson, B. J.

    2014-12-01

    Lake Gilmore in Western Australia is an acidic ephemeral lake that is analogous to Martian geochemical processes represented by interbedded phyllosilicates and sulfates. These areas demonstrate remnants of a global-scale change on Mars during the late Noachian era from a neutral to alkaline pH to relatively lower pH in the Hesperian era that continues to persist today. The geochemistry of these areas could possibly be caused by small-scale changes such as microbial metabolism. Two approaches were used to determine the presence of microbes in the Australian dry lake cores: DNA analysis and lipid analysis. Detecting DNA or lipids in the cores will provide evidence of living or deceased organisms since they provide distinct markers for life. Basic DNA analysis consists of extraction, amplification through PCR, plasmid cloning, and DNA sequencing. Once the sequence of unknown DNA is known, an online program, BLAST, will be used to identify the microbes for further analysis. The lipid analysis approach consists of phospholipid fatty acid analysis that is done by Microbial ID, which will provide direct identification any microbes from the presence of lipids. Identified microbes are then compared to mineralogy results from the x-ray diffraction of the core samples to determine if the types of metabolic reactions are consistent with the variation in composition in these analog deposits. If so, it provides intriguing implications for the presence of life in similar Martian deposits.

  1. Inorganic carbon cycling and biogeochemical processes in an Arctic inland sea (Hudson Bay)

    NASA Astrophysics Data System (ADS)

    Burt, William J.; Thomas, Helmuth; Miller, Lisa A.; Granskog, Mats A.; Papakyriakou, Tim N.; Pengelly, Leah

    2016-08-01

    The distributions of carbonate system parameters in Hudson Bay, which not only receives nearly one-third of Canada's river discharge but is also subject to annual cycles of sea-ice formation and melt, indicate that the timing and magnitude of freshwater inputs play an important role in carbon biogeochemistry and acidification in this unique Arctic ecosystem. This study uses basin-wide measurements of dissolved inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope tracers (δ18O and δ13CDIC), to provide a detailed assessment of carbon cycling processes within the bay. Surface distributions of carbonate parameters reveal the particular importance of freshwater inputs in the southern portion of the bay. Based on TA, we surmise that the deep waters in the Hudson Bay are largely of Pacific origin. Riverine TA end-members vary significantly both regionally and with small changes in near-surface depths, highlighting the importance of careful surface water sampling in highly stratified waters. In an along-shore transect, large increases in subsurface DIC are accompanied by equivalent decreases in δ13CDIC with no discernable change in TA, indicating a respiratory DIC production on the order of 100 µmol kg-1 DIC during deep water circulation around the bay.

  2. [Biogeochemical processes of the major ions and dissolved inorganic carbon in the Guijiang River].

    PubMed

    Tang, Wen-Kui; Tao, Zhen; Gao, Quan-Zhou; Mao, Hai-Ruo; Jiang, Guang-Hui; Jiao, Shu-Lin; Zheng, Xiong-Bo; Zhang, Qian-Zhu; Ma, Zan-Wen

    2014-06-01

    Within the drainage basin, information about natural processes and human activities can be recorded in the chemical composition of riverine water. The analysis of the Guijiang River, the first level tributary of the Xijiang River, demonstrated that the chemical composition of water in the Guijiang River was mainly influenced by the chemical weathering of carbonate rocks within the drainage basin, in which CO2 was the main erosion medium, and that the weathering of carbonate rock by H2SO4 had a remarkable impact on the water chemical composition in the Guijiang River. Precipitation, human activities, the weathering of carbonate rocks and silicate rocks accounted for 2.7%, 6.3%, 72.8% and 18.2% of the total dissolved load, respectively. The stable isotopic compositions of dissolved inorganic carbon (delta13C(DIC)) indicated that DIC in the Guijiang River had been assimilated by the phytoplankton in photosynthesis. The primary production of phytoplankton contributed to 22.3%-30.9% of particulate organic carbon (POC) in the Guijiang River, which implies that phytoplankton can transform DIC into POC by photosynthesis, and parts of POC will sink into the bottom of the river in transit, which leads into the formation of burial organic carbon.

  3. Benthic Communities as Indicators of Geological and Biogeochemical Processes in the Gulf of Papua

    NASA Astrophysics Data System (ADS)

    Aller, J. Y.; Dhir, S.; Chummar, J.; Dantzler, M. M.; Aller, R. C.

    2003-12-01

    Benthic communities inhabiting Gulf of Papua deposits play important roles in determining remineralization and material cycling processes at the seafloor. Faunal abundances, size-frequency distributions, functional groups, and vertical distributions reflect a spectrum of diagenetic depositional environments produced by variations in local sediment transport dynamics and coastal morphology. Thus faunal properties provide a basis for comparison of factors influencing sediment - overlying water interactions, elemental cycling, and material storage. During mid NW monsoon periods (Jan-Feb), macrofaunal densities at Gulf stations are generally low (260 to 1270 m{-2 }), large macroinfauna are absent in the upper ˜25 cm, and small (< 0.5 mm) surface deposit-feeding polychaetes and tubiculous amphipods dominate, reflecting a frequently destabilized seabed and high sedimentation / erosion rates. Although significant numbers of macrofauna have generally been found to be absent over large areas due to frequent physical disturbance, sedimentary structures demonstrate that many regions of the GoP deltaic complex are periodically extensively bioturbated by relatively large and deep-burrowing infauna. Additionally, faunal samples from February 2003 have significantly increased numbers of opportunistic polychaete and crustacean species relative to 1999 and 2000, indicating that there are periods of faunal colonization and community expansion. These changes may correlate with decreased riverine sediment input associated with El Niño conditions. While the macrofaunal community is relatively depauperate and apparently subject to inhibition by inhospitable physical conditions, the microbial community is highly active, diverse, and abundant throughout the upper ˜1m. The dominance of bacteria and microfauna rather than macrofauna in wet tropical environments like the GoP, contrasts with many reactive continental shelf mud deposits in temperate regions.

  4. Combined physical and biogeochemical processes control the mobility of arsenic in rivers of the Atacama desert, Northern Chile

    NASA Astrophysics Data System (ADS)

    Packman, A.; Gaillard, J.; Pasten, P.; Pizarro, G.; Alsina, M.; Vega, A.; Florenzano, A.; MacDonald, L.; Chen, C.

    2008-12-01

    Many watersheds are contaminated by arsenic (As) derived from natural weathering of earth-surface minerals. Some of the highest naturally occurring As concentrations in surface waters occur in the Atacama desert, Chile. Arsenic enters the Rio Loa and Rio Lluta watersheds from hydrothermal sources in the high Altiplano, producing substantial dissolved and particulate-phase As throughout both river systems. Further, occasional floods related to the ENSO cycle have produced substantial pulses of sediment-laden, As-rich water. Nonetheless, water scarcity in this extremely arid region causes the resident population to rely on these river systems for water supply, and this has historically led to substantial public health effects from chronic As exposure. Despite the scientific and practical significance of As in the rivers of northern Chile, little information is available on the processes that control As dynamics in these systems. Recently we have investigated the distribution and speciation of As in the Rio Loa and Rio Lluta river networks using a variety of new measurement methodologies in an attempt to understand how the interplay of physical and biogeochemical processes regulates As migration through these systems. The unusual chemistry associated with these volcanic, hyper-arid watersheds appears to make As more mobile in these systems than in other types of As-contaminated rivers, favoring rapid remobilization during high-flow events. Further, As transport is largely conservative under low-flow conditions, and its concentration is primarily regulated by dilution from uncontaminated sources and concentration due to the very high rates of evaporation that occur during downstream transport.

  5. New insights into biogeochemical processing gained from sub-daily river monitoring

    NASA Astrophysics Data System (ADS)

    Halliday, S. J.; Wade, A. J.; Skeffington, R. A.; Bowes, M.; Palmer-Felgate, E.; Loewenthal, M.; Jarvie, H.; Neal, C.; Reynolds, B.; Gozzard, E.; Newman, J.

    2012-12-01

    This talk will focus on the insights obtained from sub-daily hydrochemical monitoring for a sustained time periods (> 1 year), at multiple sites within a catchment and across different catchment types. Sub-daily instream hydrochemical dynamics were investigated, using non-stationary time-series analysis techniques, for two catchments representative of upland and lowland UK. The River Hafren at Plynlimon, mid-Wales drains an upland catchment where half the land cover is unmanaged moorland and the other half is first generation plantation forestry. The Hafren was monitored at two sites on a 7-hourly basis, between March 2007 and January 2009, using a Xian automatic sampler. The River Enborne, Berkshire, southeast England, is a rural lowland catchment, impacted by agricultural runoff, and septic tank and sewage treatment works discharges. The Enborne was monitored on an hourly basis between November 2009 and February 2012, using in situ field deployable analytical equipment to measure: Total Reactive Phosphorus (TRP: Systea Micromac C), Nitrate (Hach-Lange Nitratax), pH, dissolved oxygen, conductivity and water temperature (YSI 6600 Multi-parameter sonde). The results reveal complex diurnal patterns which exhibit seasonal changes in phase and amplitude, and are influenced by both flow conditions and nutrient sources. The comparison of the upland and lowland nitrate time series highlights how the different nitrogen sources within each system results in marked differences in the seasonal and diurnal dynamics, with a seasonal maximum in winter and a single peak diurnal cycle in the upland system, compared to a summer maximum and a two peak diurnal cycle in the lowland system. The analysis of TRP and nitrate concentrations in the Enborne catchment, in combination with flow, pH, dissolved oxygen, conductivity and water temperature, allowed the main processes controlling the observed sub-daily nutrient dynamics to be investigated. The different monitoring approaches adopted

  6. Metals in benthic macrofauna and biogeochemical factors affecting their trophic transfer to wild fish around fish farm cages.

    PubMed

    Kalantzi, I; Papageorgiou, N; Sevastou, K; Black, K D; Pergantis, S A; Karakassis, I

    2014-02-01

    Benthic macroinvertebrates and wild fish aggregating in the vicinity of four Mediterranean fish farms were sampled. Concentrations of metals and other elements were measured in macrofaunal taxa and in fish tissues (muscle, liver, gills, bone, gonad, stomach, intestine, and stomach content). Biological and geochemical characteristics play an important role in metal accumulation in benthic invertebrates, and consequently in metal transfer to higher trophic levels. Macroinvertebrates accumulated lower concentrations of most metals and elements than their respective sediment, except As, P, Na, Zn and Cd. Elemental concentrations of benthic organisms increased with increasing sediment metal content, except Cd, and with % silt, refractory organic matter and chlorophyll-a of sediment due to the influence of sediment geochemistry on metal bioavailability. Tolerant species were found to accumulate higher concentrations of most metals and elements, except for Cd, than equilibrium species. The ecological and morphological characteristics of the benthic invertebrates can affect the bioaccumulation of metals and elements in macrobenthos. Hg and P were found to increase their concentrations from zoobenthos to wild fish aggregating around fish cages feeding on macrofauna.

  7. Final Progress Report: Coupled Biogeochemical Process Evaluation for Conceptualizing Trichloroethylene Cometabolism

    SciTech Connect

    Crawford, Ronald L; Paszczynski, Andrzej J

    2010-02-19

    Our goal within the overall project is to demonstrate the presence and abundance of methane monooxygenases (MMOs) enzymes and their genes within the microbial community of the Idaho National Laboratory (INL) Test Area North (TAN) site. MMOs are thought to be the primary catalysts of natural attenuation of trichloroethylene (TCE) in contaminated groundwater at this location. The actual presence of the proteins making up MMO complexes would provide direct evidence for its participation in TCE degradation. The quantitative estimation of MMO genes and their translation products (sMMO and pMMO proteins) and the knowledge about kinetics and substrate specificity of MMOs will be used to develop mathematical models of the natural attenuation process in the TAN aquifer. The model will be particularly useful in prediction of TCE degradation rate in TAN and possibly in the other DOE sites. Bacteria known as methanotrophs produce a set of proteins that assemble to form methane monooxygenase complexes (MMOs), enzymes that oxidize methane as their natural substrate, thereby providing a carbon and energy source for the organisms. MMOs are also capable of co-metabolically transforming chlorinated solvents like TCE into nontoxic end products such as carbon dioxide and chloride. There are two known forms of methane monooxygenase, a membrane-bound particulate form (pMMO) and a cytoplasmic soluble form (sMMO). pMMO consists of two components, pMMOH (a hydroxylase comprised of 47-, 27-, and 24-kDa subunits) and pMMOR (a reductase comprised of 63 and 8-kDa subunits). sMMO consists of three components: a hydroxylase (protein A-250 kDa), a dimer of three subunits (α2β2γ2), a regulatory protein (protein B-15.8 kDa), and a reductase (protein C-38.6 kDa). All methanotrophs will produce a methanol dehydrogenase to channel the product of methane oxidation (methanol) into the central metabolite formaldehyde. University of Idaho (UI) efforts focused on proteomic analyses using mass

  8. ASSESSMENT OF INTRINSIC BIOREMEDIATION OF A COAL-TAR AFFECTED AQUIFER USING TWO-DIMENSIONAL REACTIVE TRANSPORT AND BIOGEOCHEMICAL MASS BALANCE APPROACHES

    EPA Science Inventory

    Expedited site characterization and groundwater monitoring using direct-push technology and conventional monitoring wells were conducted at a former manufactured gas plant site. Biogeochemical data and heterotrophic plate counts support the presence of microbially mediated remedi...

  9. Biogeochemical Processes Related to Metal Removal and Toxicity Reduction in the H-02 Constructed Wetland, Savannah River Site

    NASA Astrophysics Data System (ADS)

    Burgess, E. A.; Mills, G. L.; Harmon, M.; Samarkin, V.

    2011-12-01

    The H-02 wetland system was designed to treat building process water and storm water runoff from multiple sources associated with the Tritium Facility at the DOE-Savannah River Site, Aiken, SC. The wetland construction included the addition of gypsum (calcium sulfate) to foster a sulfate-reducing bacterial population. Conceptually, the wetland functions as follows: ? Cu and Zn initially bind to both dissolved and particulate organic detritus within the wetland. ? A portion of this organic matter is subsequently deposited into the surface sediments within the wetland. ? The fraction of Cu and Zn that is discharged in the wetland effluent is organically complexed, less bioavailable, and consequently, less toxic. ? The Cu and Zn deposited in the surface sediments are eventually sequestered into insoluble sulfide minerals in the wetland. Development of the H-02 system has been closely monitored; sampling began in August 2007, shortly after its construction. This monitoring has included the measurement of water quality parameters, Cu and Zn concentrations in surface water and sediments, as well as, characterization of the prokaryotic (e.g., bacterial) component of wetland biogeochemical processes. Since the beginning of the study, the mean influent Cu concentration was 31.5±12.1 ppb and the mean effluent concentration was 11.9±7.3 ppb, corresponding to an average Cu removal of 64%. Zn concentrations were more variable, averaging 39.2±13.8 ppb in the influent and 25.7±21.3 ppb in the effluent. Average Zn removal was 52%. The wetland also ameliorated high pH values associated with influent water to values similar to those measured at reference sites. Seasonal variations in DOC concentration corresponded to seasonal variations in Cu and Zn removal efficiency. The concentration of Cu and Zn in the surface layer of the sediments has increased over the lifetime of the wetland and, like removal efficiency, demonstrated seasonal variation. Within its first year, the H-02

  10. Synchronous DOM and dissolved phosphorus release in riparian soil waters: linking water table fluctuations and biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Gruau, G.; Dupas, R.; Humbert, G.; GU, S.; Jeanneau, L.; Fovet, O.; Denis, M.; Gascuel-Odoux, C.; Jaffrezic, A.; Faucheux, M.; Gilliet, N.; Hamon, Y.; Petitjean, P.

    2015-12-01

    Riparian zones are often viewed as hot spots controlling N, C, P and Fe cycling and export in catchments. Groundwater and surface water flowpaths converge in these zones, and encounter the most reactive, organic-rich, uppermost soil horizons, while being at the same time zones in which soil moisture conditions temporarily fluctuate due to changes in water table depth, which can trigger biogeochemical processes. One well documented example is the process of denitrification which can remove N from riparian groundwater due to the anaerobic reduction of nitrate by soil organic matter. However, the role of riparian zones on the cycling of other nutrients such as dissolved organic matter (DOM) and dissolved P (DP) is much less well documented. In this study, we evaluated this role by using time series of DOM and DP concentrations obtained on the Kervidy-Naizin catchment, a temperate agricultural headwater catchment controlled by shallow groundwater. Over 2 years, groundwater DOM and DP were monitored fortnightly both in the riparian zones and at the bottom of hillslope domains. Two periods of synchronous DOM and DP release were evidenced, the first corresponding to the rise of the water table after the dry summer period, the second being concomitant of the installation of reducing conditions. The reductive dissolution of soil Fe oxyhydroxides initiated by the prolonged soil water saturation caused the second peak, a process which was, however, strongly temporarily and spatially variable at the catchment scale, being dependent on i) the local topographic slope and ii) the annual rainfall amount and frequency. As regard the first peak, it was due either to the flushing by the water table of DOM and DP accumulated during the summer period, or to the release of microbial DOM and DP due to microbial biomass killing by osmotic shock. This study argues for the existence of coupled and complex DOM and DP release processes in the riparian zones of shallow groundwater dominated

  11. Biogeochemical processes controlling the mobility of major ions and trace metals in aquitard sediments beneath an oil sand tailing pond: Laboratory studies and reactive transport modeling

    NASA Astrophysics Data System (ADS)

    Holden, A. A.; Haque, S. E.; Mayer, K. U.; Ulrich, A. C.

    2013-08-01

    Increased production and expansion of the oil sand industry in Alberta are of great benefit to the economy, but they carry major environmental challenges. The volume of fluid fine tailings requiring storage is 840 × 106 m3 and growing, making it imperative that we better understand the fate and transport of oil sand process-affected water (OSPW) seepage from these facilities. Accordingly, the current study seeks to characterize both a) the potential for major ion and trace element release, and b) the principal biogeochemical processes involved, as tailing pond OSPW infiltrates into, and interacts with, underlying glacial till sediments prior to reaching down gradient aquifers or surface waters. Objectives were addressed through a series of aqueous and solid phase experiments, including radial diffusion cells, an isotope analysis, X-ray diffraction, and sequential extractions. The diffusion cells were also simulated in a reactive transport framework to elucidate key reaction processes. The experiments indicate that the ingress and interaction of OSPW with the glacial till sediment-pore water system will result in: a mitigation of ingressing Na (retardation), displacement and then limited precipitation of exchangeable Ca and Mg (as carbonates), sulfate reduction and subsequent precipitation of the produced sulfides, as well as biodegradation of organic carbon. High concentrations of ingressing Cl (~ 375 mg L- 1) and Na (~ 575 mg L- 1) (even though the latter is delayed, or retarded) are expected to migrate through the till and into the underlying sand channel. Trace element mobility was influenced by ion exchange, oxidation-reduction, and mineral phase reactions including reductive dissolution of metal oxyhydroxides — in accordance with previous observations within sandy aquifer settings. Furthermore, although several trace elements showed the potential for release (Al, B, Ba, Cd, Mn, Pb, Si, Sr), large-scale mobilization is not supported. Thus, the present

  12. Biogeochemical processes controlling the mobility of major ions and trace metals in aquitard sediments beneath an oil sand tailing pond: laboratory studies and reactive transport modeling.

    PubMed

    Holden, A A; Haque, S E; Mayer, K U; Ulrich, A C

    2013-08-01

    Increased production and expansion of the oil sand industry in Alberta are of great benefit to the economy, but they carry major environmental challenges. The volume of fluid fine tailings requiring storage is 840×10(6) m(3) and growing, making it imperative that we better understand the fate and transport of oil sand process-affected water (OSPW) seepage from these facilities. Accordingly, the current study seeks to characterize both a) the potential for major ion and trace element release, and b) the principal biogeochemical processes involved, as tailing pond OSPW infiltrates into, and interacts with, underlying glacial till sediments prior to reaching down gradient aquifers or surface waters. Objectives were addressed through a series of aqueous and solid phase experiments, including radial diffusion cells, an isotope analysis, X-ray diffraction, and sequential extractions. The diffusion cells were also simulated in a reactive transport framework to elucidate key reaction processes. The experiments indicate that the ingress and interaction of OSPW with the glacial till sediment-pore water system will result in: a mitigation of ingressing Na (retardation), displacement and then limited precipitation of exchangeable Ca and Mg (as carbonates), sulfate reduction and subsequent precipitation of the produced sulfides, as well as biodegradation of organic carbon. High concentrations of ingressing Cl (~375 mg L(-1)) and Na (~575 mg L(-1)) (even though the latter is delayed, or retarded) are expected to migrate through the till and into the underlying sand channel. Trace element mobility was influenced by ion exchange, oxidation-reduction, and mineral phase reactions including reductive dissolution of metal oxyhydroxides - in accordance with previous observations within sandy aquifer settings. Furthermore, although several trace elements showed the potential for release (Al, B, Ba, Cd, Mn, Pb, Si, Sr), large-scale mobilization is not supported. Thus, the present

  13. Cognitive and Affective Processes Underlying Career Change

    ERIC Educational Resources Information Center

    Muja, Naser; Appelbaum, Steven H.

    2012-01-01

    Purpose: Aligning social identity and career identity has become increasingly complex due to growth in the pursuit of meaningful careers that offer very long-term personal satisfaction and stability. This paper aims to explore the complex cognitive and affective thought process involved in the conscious planning of voluntary career change.…

  14. Transpiration Driven Hydrologic Transport in vegetated shallow water environments: Implications on Diel and Seasonal Soil Biogeochemical Processes and System Management

    NASA Astrophysics Data System (ADS)

    Bachand, P.; Bachand, S. M.; Fleck, J.; Anderson, F.

    2011-12-01

    modified Peclet No. calculations, we quantified the relative importance of upward diffusion from the sediments and downward advection from transpiration as hydrologic transport mechanisms in the root zone. Transpiration driven infiltration moves water past the diffusive zone within 1 - 2 days in this system during the summer months. With the waning seasons, evapotranspiration diminishes until by winter diffusion dominates throughout the entire root zone. This model has great implications on the analyses of soil biogeochemical process in the root zone of shallow aquatic systems. Downward advection is a major transport mechanism into the root zone of shallow flooded aquatic systems and provides an important physical mechanism that drives variability in the seasonal and diel storage; release and cycling of COCs; and the creation of both a physical and chemical barrierd to upward diffusion of soil-borne COCs into the water column. Models that do not account for root zone interactions may not be able to capture diel and seasonal differences. Moreover, these interactions may lead to unanticipated environmental consequences as a result of cultural practices.

  15. Use of Zn isotopes as a probe of anthropogenic contamination and biogeochemical processes in the Seine River, France

    NASA Astrophysics Data System (ADS)

    Chen, J.; Gaillardet, J.; Louvat, P.; Birck, J.

    2009-05-01

    a whole river basin, showing Zn isotopes a powerful probe to trace contamination sources and biogeochemical processes in hydrologic systems.

  16. Effects of biogeochemical processes on magnesium isotope variations in a forested catchment in the Vosges Mountains (France)

    NASA Astrophysics Data System (ADS)

    Bolou-Bi, Emile B.; Vigier, Nathalie; Poszwa, Anne; Boudot, Jean-Pierre; Dambrine, Etienne

    2012-06-01

    This study investigates the potential of Mg isotopes as tracers of biogeochemical processes in a small-forested catchment located on sandstones extremely poor in Mg-bearing minerals. The average δ26Mg is -0.63 ± 0.12‰ and 0 ± 0.14‰ for local rainwater and bedrock, respectively. From the C horizon to the upper eluvial (E) horizon, soil δ26Mg (from 0.0 ± 0.14‰ to 0.25 ± 0.14‰) is close to the bedrock value, while more than 70% of Mg is lost, suggesting a small isotopic shift during illite dissolution. The surface soil horizon (Ah) δ26Mg is close to plant δ26Mg, and especially to the grass δ26Mg value (-0.49‰). The bulk δ26Mg of trees and grass (-0.32‰ and -0.41‰, respectively) are higher than the average δ26Mg values of the soil exchangeable fraction (-0.92‰ to -0.42‰), and of rainwater (-0.65‰). Within plants, roots are enriched in heavy isotopes, whereas light isotopes are preferentially translocated and stored in the above ground parts. In Norway spruce, the older needles, forming the annual litterfall, are isotopically lighter and strongly depleted in Mg compared to more recent needles. Soil solution δ26Mg shifts seasonally, from low values, lower than rainwater and close to litterfall during a high rainfall period in spring, to higher values, close to soil δ26Mg in dryer periods of winter or summer. At the watershed scale, streamwater δ26Mg varies between -0.85 ± 0.14‰ and -0.08 ± 0.14‰ and δ26Mg values decrease linearly with discharge. The high streamwater δ26Mg at low flow, close to bedrock δ26Mg, most likely reflects dissolution processes in the deep saprolite in relation to the very long water residence time. Conversely, we suggest that low stream level δ26Mg values are at least partly related to the contribution of surface flows from wet areas. Using a simple mass and isotopic balance approach, we compute that mineral dissolution rates in the soil (0.35 kg Mg ha-1 year-1) presently compensate for Mg losses from

  17. Microphysical Processes Affecting the Pinatubo Volcanic Plume

    NASA Technical Reports Server (NTRS)

    Hamill, Patrick; Houben, Howard; Young, Richard; Turco, Richard; Zhao, Jingxia

    1996-01-01

    In this paper we consider microphysical processes which affect the formation of sulfate particles and their size distribution in a dispersing cloud. A model for the dispersion of the Mt. Pinatubo volcanic cloud is described. We then consider a single point in the dispersing cloud and study the effects of nucleation, condensation and coagulation on the time evolution of the particle size distribution at that point.

  18. Stress modulation of cognitive and affective processes.

    PubMed

    Campeau, Serge; Liberzon, Israel; Morilak, David; Ressler, Kerry

    2011-09-01

    This review summarizes the major discussion points of a symposium on stress modulation of cognitive and affective processes, which was held during the 2010 workshop on the neurobiology of stress (Boulder, CO, USA). The four discussants addressed a number of specific cognitive and affective factors that are modulated by exposure to acute or repeated stress. Dr David Morilak discussed the effects of various repeated stress situations on cognitive flexibility, as assessed with a rodent model of attentional set-shifting task, and how performance on slightly different aspects of this test is modulated by different prefrontal regions through monoaminergic neurotransmission. Dr Serge Campeau summarized the findings of several studies exploring a number of factors and brain regions that regulate habituation of various autonomic and neuroendocrine responses to repeated audiogenic stress exposures. Dr Kerry Ressler discussed a body of work exploring the modulation and extinction of fear memories in rodents and humans, especially focusing on the role of key neurotransmitter systems including excitatory amino acids and brain-derived neurotrophic factor. Dr Israel Liberzon presented recent results on human decision-making processes in response to exogenous glucocorticoid hormone administration. Overall, these discussions are casting a wider framework on the cognitive/affective processes that are distinctly regulated by the experience of stress and some of the brain regions and neurotransmitter systems associated with these effects.

  19. Stress modulation of cognitive and affective processes.

    PubMed

    Campeau, Serge; Liberzon, Israel; Morilak, David; Ressler, Kerry

    2011-09-01

    This review summarizes the major discussion points of a symposium on stress modulation of cognitive and affective processes, which was held during the 2010 workshop on the neurobiology of stress (Boulder, CO, USA). The four discussants addressed a number of specific cognitive and affective factors that are modulated by exposure to acute or repeated stress. Dr David Morilak discussed the effects of various repeated stress situations on cognitive flexibility, as assessed with a rodent model of attentional set-shifting task, and how performance on slightly different aspects of this test is modulated by different prefrontal regions through monoaminergic neurotransmission. Dr Serge Campeau summarized the findings of several studies exploring a number of factors and brain regions that regulate habituation of various autonomic and neuroendocrine responses to repeated audiogenic stress exposures. Dr Kerry Ressler discussed a body of work exploring the modulation and extinction of fear memories in rodents and humans, especially focusing on the role of key neurotransmitter systems including excitatory amino acids and brain-derived neurotrophic factor. Dr Israel Liberzon presented recent results on human decision-making processes in response to exogenous glucocorticoid hormone administration. Overall, these discussions are casting a wider framework on the cognitive/affective processes that are distinctly regulated by the experience of stress and some of the brain regions and neurotransmitter systems associated with these effects. PMID:21790481

  20. Impact of Chronic Hypercortisolemia on Affective Processing

    PubMed Central

    Langenecker, Scott A.; Weisenbach, Sara L.; Giordani, Bruno; Briceno, Emily M.; GuidottiBreting, Leslie M.; Schallmo, Michael-Paul; Leon, Hadia M.; Noll, Douglas C.; Zubieta, Jon-Kar; Schteingart, David E.; Starkman, Monica N.

    2011-01-01

    Cushing syndrome (CS) is the classic condition of cortisol dysregulation, and cortisol dysregulation is the prototypic finding in Major Depressive Disorder (MDD). We hypothesized that subjects with active CS would show dysfunction in frontal and limbic structures relevant to affective networks, and also manifest poorer facial affect identification accuracy, a finding reported in MDD.Twenty-one patients with confirmed CS (20 ACTH-dependent and 1 ACTH-independent) were compared to 21 healthy controlsubjects. Identification of affective facial expressions (Facial Emotion Perception Test) was conducted in a 3 Tesla GE fMRI scanner using BOLD fMRI signal. The impact of disease (illness duration, current hormone elevation and degree of disruption of circadian rhythm), performance, and comorbid conditions secondary to hypercortisolemia were evaluated.CS patients made more errors in categorizing facial expressions and had less activation in left anterior superior temporal gyrus, a region important in emotion processing. CS patients showed higher activation in frontal, medial, and subcortical regions relative to controls. Two regions of elevated activation in CS, left middle frontal and lateral posterior/pulvinar areas, were positively correlated with accuracy in emotion identification in the CS group, reflecting compensatory recruitment. In addition, within the CSgroup, greater activation in left dorsal anterior cingulatewas related to greater severity of hormone dysregulation. In conclusion, cortisol dysregulation in CS patients is associated with problems in accuracy of affective discrimination and altered activation of brain structures relevant to emotion perception, processing and regulation, similar to the performance decrements and brain regions shown to be dysfunctional in MDD. PMID:21787793

  1. Afforestation Alters the Composition of Functional Genes in Soil and Biogeochemical Processes in South American Grasslands▿ †

    PubMed Central

    Berthrong, Sean T.; Schadt, Christopher W.; Piñeiro, Gervasio; Jackson, Robert B.

    2009-01-01

    Soil microbes are highly diverse and control most soil biogeochemical reactions. We examined how microbial functional genes and biogeochemical pools responded to the altered chemical inputs accompanying land use change. We examined paired native grasslands and adjacent Eucalyptus plantations (previously grassland) in Uruguay, a region that lacked forests before European settlement. Along with measurements of soil carbon, nitrogen, and bacterial diversity, we analyzed functional genes using the GeoChip 2.0 microarray, which simultaneously quantified several thousand genes involved in soil carbon and nitrogen cycling. Plantations and grassland differed significantly in functional gene profiles, bacterial diversity, and biogeochemical pool sizes. Most grassland profiles were similar, but plantation profiles generally differed from those of grasslands due to differences in functional gene abundance across diverse taxa. Eucalypts decreased ammonification and N fixation functional genes by 11% and 7.9% (P < 0.01), which correlated with decreased microbial biomass N and more NH4+ in plantation soils. Chitinase abundance decreased 7.8% in plantations compared to levels in grassland (P = 0.017), and C polymer-degrading genes decreased by 1.5% overall (P < 0.05), which likely contributed to 54% (P < 0.05) more C in undecomposed extractable soil pools and 27% less microbial C (P < 0.01) in plantation soils. In general, afforestation altered the abundance of many microbial functional genes, corresponding with changes in soil biogeochemistry, in part through altered abundance of overall functional gene types rather than simply through changes in specific taxa. Such changes in microbial functional genes correspond with altered C and N storage and have implications for long-term productivity in these soils. PMID:19700539

  2. Biogeochemical processing of nutrients in groundwater-fed stream during baseflow conditions - the value of fluorescence spectroscopy and automated high-frequency nutrient monitoring

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Louise

    2014-05-01

    Recent research in groundwater-dominated streams indicates that organic matter plays an important role in nutrient transformations at the surface-groundwater interface known as the hyporheic zone. Mixing of water and nutrient fluxes in the hyporheic zone controls in-stream nutrients availability, dynamics and export to downstream reaches. In particular, benthic sediments can form adsorptive sinks for organic matter and reactive nutrients (nitrogen and phosphorus) that sustain a variety of hyporheic processes e.g. denitrification, microbial uptake. Thus, hyporheic metabolism can have an important effect on both quantity (concentration) and quality (labile vs. refractory character) of organic matter. Here high-frequency nutrient monitoring combined with spectroscopic analysis was used to provide insights into biogeochemical processing of a small, agricultural stream in the NE England subject to diffuse nutrient pollution. Biogeochemical data were collected hourly for a week at baseflow conditions when in-stream-hyporheic nutrient dynamics have the greatest impact on stream health. In-stream nutrients (total phosphorus, reactive phosphorus, nitrate nitrogen) and water quality parameters (turbidity, specific conductivity, pH, temperature, dissolved oxygen, redox potential) were measured in situ hourly by an automated bank-side laboratory. Concurrent hourly autosamples were retrieved daily and analysed for nutrients and fine sediments including spectroscopic analyses of dissolved organic matter - excitation-emission matrix (EEM) fluorescence spectroscopy and ultraviolet-visible (UV-Vis) absorbance spectroscopy. Our results show that organic matter can potentially be utilised as a natural, environmental tracer of the biogeochemical processes occurring at the surface-groundwater interface in streams. High-frequency spectroscopic characterisation of in-stream organic matter can provide useful quantitative and qualitative information on fluxes of reactive nutrients in

  3. Biogeochemical processes controlling the mobility of major ions and trace metals in aquitard sediments beneath an oil sand tailing pond: laboratory studies and reactive transport modeling.

    PubMed

    Holden, A A; Haque, S E; Mayer, K U; Ulrich, A C

    2013-08-01

    Increased production and expansion of the oil sand industry in Alberta are of great benefit to the economy, but they carry major environmental challenges. The volume of fluid fine tailings requiring storage is 840×10(6) m(3) and growing, making it imperative that we better understand the fate and transport of oil sand process-affected water (OSPW) seepage from these facilities. Accordingly, the current study seeks to characterize both a) the potential for major ion and trace element release, and b) the principal biogeochemical processes involved, as tailing pond OSPW infiltrates into, and interacts with, underlying glacial till sediments prior to reaching down gradient aquifers or surface waters. Objectives were addressed through a series of aqueous and solid phase experiments, including radial diffusion cells, an isotope analysis, X-ray diffraction, and sequential extractions. The diffusion cells were also simulated in a reactive transport framework to elucidate key reaction processes. The experiments indicate that the ingress and interaction of OSPW with the glacial till sediment-pore water system will result in: a mitigation of ingressing Na (retardation), displacement and then limited precipitation of exchangeable Ca and Mg (as carbonates), sulfate reduction and subsequent precipitation of the produced sulfides, as well as biodegradation of organic carbon. High concentrations of ingressing Cl (~375 mg L(-1)) and Na (~575 mg L(-1)) (even though the latter is delayed, or retarded) are expected to migrate through the till and into the underlying sand channel. Trace element mobility was influenced by ion exchange, oxidation-reduction, and mineral phase reactions including reductive dissolution of metal oxyhydroxides - in accordance with previous observations within sandy aquifer settings. Furthermore, although several trace elements showed the potential for release (Al, B, Ba, Cd, Mn, Pb, Si, Sr), large-scale mobilization is not supported. Thus, the present

  4. Planetary Biogeochemical Stewardship (Invited)

    NASA Astrophysics Data System (ADS)

    Schlesinger, W. H.

    2010-12-01

    Many of today’s most pressing environmental problems have a basis in chemistry—that is human disruption of global biogeochemical cycles. Humans have enhanced the movement of C, N, P, and S in the global cycle of these elements, with widespread consequences such as climate change, hypoxia and acid rain. Recent attempts to calculate thresholds of global vulnerability ignore ample evidence that human impacts on the Earth’s chemical environment yield progressive degradation of the biosphere, especially its species diversity. Our collect global impact now exceeds natural processes of planetary remediation—clearly an unsustainable path. I will attempt to provide a framework to evaluate suggested attempts to mitigate current human impact on global biogeochemical cycles. Cap-and-trade systems are ideal for perturbations that involve a limited number of point sources that supplement a small background flux to the atmosphere, such as S. Better land management may be the most attractive way to mitigate human impacts to the Nitrogen cycle, where the potential for enhanced denitrification could respond to the order-of-magnitude of the current human perturbation. Impacts to the carbon cycle, seen through rising CO2 in Earth’s atmosphere, will require switching to energy that does not depend on fossil carbon.

  5. Quantifying the dynamic coupling of hydrologic and biogeochemical processes in stream ecosystems: examples from streams in the McMurdo Dry Valleys, Antarctica

    NASA Astrophysics Data System (ADS)

    McKnight, D. M.; Lyons, W. B.; Gooseff, M. N.; Koch, J. C.; Neupauer, R.; Cozzetto, K.; Bencala, K.; Cullis, J. D.

    2014-12-01

    While continuous monitoring of stream flow and stream temperature has been a widely used resource for some time, currently there is great potential to expand continuous monitoring to include important water quality parameters such as nutrients and dissolved organic material. In many systems distinguishing between watershed and stream ecosystem controls can be challenging, and the usefulness of such monitoring can be enhanced by application of quantitative models to interpret observed patterns. The glacial meltwater streams of the McMurdo Dry Valleys, Antarctica, are surrounded by large expanses of patterned ground devoid of plants. In contrast, many streams have thriving cyanobacterial mats that are freeze-dried through the winter and begin photosynthesis with the onset of flow. Thus, the daily signal in terms of biogeochemical processes controlling water quality is generated within the stream. As part of the McMurdo Dry Valleys Long Term Ecological Research project, we have conducted field experiments and developed coupled biogeochemical transport models for the role of hyporheic exchange in controlling weathering of major ions, microbial cycling of nitrogen species, and streams temperature regulation. We have also adapted modelling approaches from sediment transport to understand mobilization of stream biomass with increasing flows. These models are relevant to understanding the role of in-stream processes in diverse stream systems where watershed processes also contribute to observed patterns.

  6. Factors affecting the process performance of biofiltration

    SciTech Connect

    Kopchynski, D.M.; Farmer, R.W.; Maier, W.J.

    1996-11-01

    Biofiltration is an emerging biological treatment technology for the removal of airborne VOCs from industrial process waste streams. Removal of air-phase VOCs by biofiltration is accomplished by contacting a process airstream with an active microbial biofilm attached to a solid phase packing. VOCs that partition into the biofilm are aerobically oxidized to the endproducts of water, carbon dioxide and salts. A multiple reactor biofiltration pilot plant test program has been in progress at the University of Minnesota Environmental Engineering Laboratories since 1992. The primary goal of the program is to study factors that affect biofiltration process performance. Initial results of this test program were reported in a previous conference paper and master`s thesis. This paper presents the results of more recent studies that focus on the effects of: (1) biofilm accumulation (which in turn causes a decrease in biofilter bed porosity and packing bed surface area), (2) rates of nutrient addition, and (3) chemical properties of the target contaminant, on biofiltration removal performance. Removal performance was evaluated by determining biofilter removal capacities and efficiencies for various substrate feeds. The performance parameters were measured under constant contaminant inlet concentrations and under constant temperature. Three VOCs were selected for study and they are: MEK, (methyl ethyl ketone), xylene, and hexane. MEK, xylene, and hexane were chosen because they are representative of widely used industrial solvents and they have significantly different Henry`s law constants relative to each other (the MEK value < Xylene value < Hexane value). Henry`s law constants quantify the partitioning of a chemical between the air and water-biofilm phase and therefore can be used to correlate the effect of chemical properties on biofilter removal capacities. This paper also introduces a new model for the biofiltration process.

  7. Will a changed element composition of rainfall - due to climate change - affect the biogeochemical cycle of montane forest soils in Southern Ecuador?

    NASA Astrophysics Data System (ADS)

    Wullaert, H.; Peña, J. L.; González, E.; Valarezo, C.; Wilcke, W.

    2009-04-01

    Increasing biomass burning, fertilization and industrialization in tropical areas will generally lead to a greater N deposition in the Tropics including the northern Andean forests in the coming decades. In previous work, we detected extra Ca deposition from the atmosphere in the northern Andes originating from Sahara dust during a pronounced la Niña event. Therefore, the possible shortening of the El Niño Southern Oscillation might result in more frequent Ca input into the northern Andean forests. We quantify biogeochemical processes in a tropical montane forest in southern Ecuador at 2000 m a.s.l. in response to N and Ca additions to simulate elevated N and Ca deposition from the atmosphere. Four replicate experimental plots under native forest were fertilized with either 50 kg N or 10 kg Ca ha-1 y-1 with urea (46%) and CaCl2.2H2O, respectively, distributed between two dates per year and the effects were compared with non-fertilized control plots. We collected litter percolate with zero-tension lysimeters, soil solution with suction cups at 0.15 and 0.30 m, rainfall and throughfall. Samples were analyzed for concentrations of total N, nitrate, ammonium, dissolved organic nitrogen (DON) and Ca. Two months after the first fertilization, nitrogen addition mainly stimulates microbial activity where in a priming effect ammonium is transferred to nitrate and soil organic matter is mineralised, resulting in increased DON concentrations. This stimulation would also release other nutrients than N which in turn enhance tree growth. Total nitrogen concentration in litter leachate increased slightly after N fertilization from 1.75 mg/l to 1.8 mg/l, which represents about 1.5% of the total applied N. In contrast, the low Ca concentrations in litter leachate doubled from 0.10 mg/l to 0.20 mg/l after Ca addition, which on yearly basis would represent about 15% of the total applied Ca. From these preliminary results we conclude that (i) both added N and Ca are net retained in

  8. Simulating temporal variations of nitrogen losses in river networks with a dynamic transport model unravels the coupled effects of hydrological and biogeochemical processes

    SciTech Connect

    Mulholland, Patrick J; Alexander, Richard; Bohlke, John; Boyer, Elizabeth; Harvey, Judson; Seitzinger, Sybil; Tobias, Craig; Tonitto, Christina; Wollheim, Wilfred

    2009-01-01

    The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly

  9. Up-scaling of process-based eco-hydrology model to global scale for identification of hot spots in boundless biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2013-12-01

    Recent research shows inland water may play some role in continental biogeochemical cycling though its contribution has remained uncertain due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which includes surface-groundwater interactions and down-scaling process from regional to local simulation with finer resolution, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes in east Asia. In this study, NICE was further extended to implement map factor and non-uniform grid through up-scaling process of coordinate transformation from rectangular to longitude-latitude system applicable to global scale. This improved model was applied to several basins in Eurasia to evaluate the impact of coordinate transformation on eco-hydrological changes. Simulated eco-hydrological process after up-scaling corresponded reasonably to that in the original there after evaluating the effect of different latitude. Then, the model was expanded to evaluate global hydrologic cycle by using various global datasets. The simulated result agreed reasonably with that in the previous research (Fan et al., 2013) and extended to clarify further eco-hydrological process in global scale. This simulation system would play important role in identification of spatio-temporal hot spots in boundless biogeochemical cycle along terrestrial-aquatic continuum for global environmental change (Cole et al. 2007; Battin et al. 2009; Frei et al. 2012).

  10. Biogeochemical Cycles of Carbon and Sulfur

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, D. (Technical Monitor)

    2002-01-01

    The elements carbon (C) and sulfur (S) interact with each other across a network of elemental reservoirs that are interconnected by an array of physical, chemical and biological processes. These networks are termed the biogeochemical C and S cycles. The compounds of C are highly important, not only as organic matter, but also as atmospheric greenhouse gases, pH buffers in seawater, oxidation-reduction buffers virtually everywhere, and key magmatic constituents affecting plutonism and volcanism. The element S assumes important roles as an oxidation-reduction partner with C and Fe in biological systems, as a key constituent in magmas and volcanic gases, and as a major influence upon pH in certain environments. This presentation describes the modern biogeochemical C and S cycles. Measurements are described whereby stable isotopes can help to infer the nature and quantitative significance of biological and geological processes involved in the C and S cycles. This lecture also summarizes the geological and climatologic aspects of the ancient C and S cycles, as well as the planetary and extraterrestrial processes that influenced their evolution over millions to billions of years.

  11. Reappraisal of soil C storage processes. The controversy on structural diversity of humic substances as biogeochemical driver for soil C fluxes

    NASA Astrophysics Data System (ADS)

    Almendros, Gonzalo; Gonzalez-Vila, Francisco J.; Gonzalez-Perez, Jose Antonio; Knicker, Heike

    2016-04-01

    The functional relationships between the macromolecular structure of the humic substances (HS) and a series of biogeochemical processes related with the C sequestration performance in soils have been recently questioned. In this communication we collect recent data from a wide array of different ecosystems where the C storage in soils has been studied and explained as a possible cause-to-effect relationship or has been found significantly correlated (multivariate statistical models) with a series of structural characteristics of humic materials. The study of humic materials has methodological analytical limitations that are derived from its complex, chaotic and not completely understood structure, that reflects its manifold precursors as well as the local impact of environmental/depositional factors. In this work we attempt to design an exploratory, multiomic approach based on the information provided by the molecular characterization of the soil organic matter (SOM). Massive data harvesting was carried out of statistical variables, to infer biogeochemical proxies (spectroscopic, chromatographic, mass spectrometric quantitative descriptors). The experimental data were acquired from advanced instrumental methodologies, viz, analytical pyrolysis, compound-specific stable isotope analysis (CSIA), derivative infrared (FTIR) spectroscopy, solid-state C-13 and N-15 nuclear magnetic resonance (NMR) and mass spectrometry (MS) data after direct injection (thermoevaporation), previous pyrolysis, or ion averaging of specific m/z ranges from classical GC/MS chromatograms. In the transversal exploratory analysis of the multianalytical information, the data were coded for on-line processing in a stage in which there is no need for interpretation, in molecular or structural terms, of the quantitative data consisting of e.g., peak intensities, signal areas, chromatographic (GC) total abundances, etc. A series of forecasting chemometric approaches (aiming to express SOM

  12. A new post-processing tool for the source-related element tracing in biogeochemical models: A case study for the North Sea

    NASA Astrophysics Data System (ADS)

    Große, Fabian; Kreus, Markus; Pätsch, Johannes

    2015-04-01

    The mitigation of eutrophication and its concomitants, like harmful algal blooms or deoxygenation of bottom waters, is one of the major aspects of the ecological management of coastal marine ecosystems. In the past, biogeochemical models helped to significantly improve the understanding of the interaction of the physical and biological processes behind eutrophication. Nevertheless, the quantification of the influence of source-related nutrient inputs to eutrophication in a specific region remains an important issue, since it is as crucial for an efficient management as it is difficult to obtain. About a decade ago, a method applicable to biogeochemical models had been developed allowing for the tracing of elements from different sources, e.g. phosphorus and/or nitrogen from two different rivers, throughout the whole process chain of the applied model. This tracing method - often referred to as 'trans-boundary nutrient transport' (TBNT) - provides additional information about the contributions from different sources to the overall amount ('bulk') of an element in each part of the model domain. This information constitutes the basis for the quantification, evaluation and optimisation of nutrient reduction targets for the tributaries of a marine ecosystem. In the meantime, the TBNT method has been applied to a variety of different biogeochemical models, e.g. to quantify the influence of nutrient loads from different rivers or atmospheric deposition on phytoplankton blooms or to determine the source-related composition of total nitrogen in different parts of an ecosystem. However, for all of these applications the method was directly implemented into the considered model, and thus was model-dependent and required an individual solution to deal with the model specifics like grid structure, programming language etc. For the application of the TBNT method to the ECOHAM model (ECOlogical model HAMburg), we further developed the approach by creating a post-processing

  13. Seasonal baseline of nutrients and stable isotopes in a saline lake of Argentina: biogeochemical processes and river runoff effects.

    PubMed

    Kopprio, Germán A; Kattner, Gerhard; Freije, R Hugo; de Paggi, Susana José; Lara, Rubén J

    2014-05-01

    The seasonal variability of inorganic and organic nutrients and stable isotopes and their relations with plankton and environmental conditions were monitored in Lake Chasicó. Principal component analysis evidenced the strong influence of the river runoff on several biogeochemical variables. Silicate concentrations were controlled by diatom biomass and river discharge. Higher values of nitrate and soluble reactive phosphorus (SRP) indicated agricultural uses in the river basin. Elevated pH values (∼ 9) inhibiting nitrification in the lake explained partially the dominance of ammonium: ∼ 83 % of dissolved inorganic nitrogen (DIN). The low DIN/SRP ratio inferred nitrogen limitation, although the hypotheses of iron and CO2 limitation are relevant in alkaline lakes. Particulate organic matter (POM) and dissolved organic matter (DOM) were mainly of autochthonous origin. The main allochthonous input was imported by the river as POM owning to the arid conditions. Dissolved organic carbon was likely top-down regulated by the bacterioplankton grazer Brachionus plicatilis. The δ(13)C signature was a good indicator of primary production and its values were influenced probably by CO2 limitation. The δ(15)N did not evidence nitrogen fixation and suggested the effects of anthropogenic activities. The preservation of a good water quality in the lake is crucial for resource management.

  14. Modeling biogeochemical processes in subterranean estuaries: Effect of flow dynamics and redox conditions on submarine groundwater discharge of nutrients

    NASA Astrophysics Data System (ADS)

    Spiteri, Claudette; Slomp, Caroline P.; Tuncay, Kagan; Meile, Christof

    2008-02-01

    A two-dimensional density-dependent reactive transport model, which couples groundwater flow and biogeochemical reactions, is used to investigate the fate of nutrients (NO3-, NH4+, and PO4) in idealized subterranean estuaries representing four end-members of oxic/anoxic aquifer and seawater redox conditions. Results from the simplified model representations show that the prevalent flow characteristics and redox conditions in the freshwater-seawater mixing zone determine the extent of nutrient removal and the input of nitrogen and phosphorus to coastal waters. At low to moderate groundwater velocities, simultaneous nitrification and denitrification can lead to a reversal in the depth of freshwater NO3- and NH4+-PO4 plumes, compared to their original positions at the landward source. Model results suggest that autotrophic denitrification pathways with Fe2+ or FeS2 may provide an important, often overlooked link between nitrogen and phosphorus biogeochemistry through the precipitation of iron oxides and subsequent binding of phosphorus. Simulations also highlight that deviations of nutrient data from conservative mixing curves do not necessarily indicate nutrient removal.

  15. Assessment of intrinsic bioremediation of a coal-tar-affected aquifer using two-dimensional reactive transport and biogeochemical mass balance approaches

    SciTech Connect

    Rogers, S.W.; Ong, S.K.; Stenback, G.A.; Golchin, J.; Kjartanson, B.H.

    2007-01-15

    Expedited site characterization and groundwater monitoring using direct-push technology and conventional monitoring wells were conducted at a former manufactured gas plant site. Biogeochemical data and heterotrophic plate counts support the presence of microbially mediated remediation. By superimposing solutions of a two-dimensional reactive transport analytical model, first-order degradation rate coefficients (day{sup -1}) of various compounds for the dissolved-phase plume were estimated (i.e., benzene (0.0084), naphthalene (0.0058), and acenaphthene (0.0011)). The total mass transformed by aerobic respiration, nitrate reduction, and sulfate reduction around the free-phase coal-tar dense-nonaqueous-phase-liquid region and in the plume was estimated to be approximately 4.5 kg/y using a biogeochemical mass-balance approach. The total mass transformed using the degradation rate coefficients was estimated to be approximately 3.6 kg/y. Results showed that a simple two-dimensional analytical model and a biochemical mass balance with geochemical data from expedited site characterization can be useful for rapid estimation of mass-transformation rates.

  16. Assessment of intrinsic bioremediation of a coal-tar-affected aquifer using Two-dimensional reactive transport and Biogeochemical mass balance approaches.

    PubMed

    Rogers, Shane W; Ong, Say Kee; Stenback, Greg A; Golchin, Johanshir; Kjartanson, Bruce H

    2007-01-01

    Expedited site characterization and groundwater monitoring using direct-push technology and conventional monitoring wells were conducted at a former manufactured gas plant site. Biogeochemical data and heterotrophic plate counts support the presence of microbially mediated remediation. By superimposing solutions of a two-dimensional reactive transport analytical model, first-order degradation rate coefficients ((day-1) ) of various compounds for the dissolved-phase plume were estimated (i.e., benzene [0.0084], naphthalene [0.0058], and acenaphthene [0.0011]). The total mass transformed by aerobic respiration, nitrate reduction, and sulfate reduction around the free-phase coal-tar dense-nonaqueous-phase-liquid region and in the plume was estimated to be approximately 4.5 kg/y using a biogeochemical mass-balance approach. The total mass transformed using the degradation rate coefficients was estimated to be approximately 3.6 kg/y. Results showed that a simple two-dimensional analytical model and a biochemical mass balance with geochemical data from expedited site characterization can be useful for rapid estimation of mass-transformation rates.

  17. The biogeochemical footprint of agricultural soil erosion

    NASA Astrophysics Data System (ADS)

    Govers, Gerard; Van Oost, Kristof; Wang, Zhengang

    2015-04-01

    Global biogeochemical cycles are a key component of the functioning of the Earth System: these cycles are all, to a varying extent, disturbed by human activities which not only has dramatic consequences for the global climate but also for the acidity of the world's oceans. It is only relatively recently that the role of lateral fluxes related to surface water movement and soil erosion and deposition (and the way those fluxes are modified by human action) is explicitly considered by the scientific community. In this paper we present an overview of our present-day understanding of the role of agricultural soil erosion in the global cycles of carbon, nitrogen, phosphorous and silica. We discuss the major processes through which erosion affects these global cycles and pay particular attention to the knowledge gaps that prevent us from accurately assessing the impact of soil erosion on global biogeochemical cycling at different temporal scales. Furthering our understanding (and better constraining our estimates) will require progress both in terms of model development and process understanding. Research needs can be most clearly identified with respect to soil organic carbon: (i) at present, large-scale soil erosion (and deposition) models are poorly constrained so that the amount of carbon mobilised by erosion (and its fate) cannot be accurately estimated and (ii) the fate of soil organic carbon buried by deposition or delivered to river network is poorly understood. Uncertainties for N, P and Si are larger than those for C as we have less information on the amount of these elements stored in agricultural soils and/or do not fully understand how these elements cycle through the soil/plant system. Agricultural soil erosion does not affect soil functioning through its effect on biogeochemical cycling. Erosion directly affects soil hydrological functioning and is likely to affect weathering processes and soil production. Addressing all these issues requires the

  18. Impact of dust on biogeochemical processes in the East Mediterranean Sea, lessons from on-board microcosm and land-based mesocosm experiments

    NASA Astrophysics Data System (ADS)

    Herut, Barak; Pitta, Paraskevi; Mihalopoulos, Nikos; Tsagaraki, Tatiana; Rahav, Eyal; Berman-Frank, Ilana; Psarra, Stella; Giannakourou, Antonia; Tsiola, Anastasia; Shi, Zongbo; Tanaka, Tsuneo; Kocak, Mustafa; Yucel, Nebil; Liu, Hongbin; Louiza Pedrotti, Maria; Tsapakis, Manolis; Violaki, Kalliopi; Fernandez, MariLuz; Meador, Travis; Panagiotopoulos, Christos

    2014-05-01

    Recent on-board microcosm and land-based mesocosm experiments in the oligotrophic Eastern Mediterranean Sea (EMS) indicates a significant role of Mediterranean aerosols as a net supplier of macro and micro nutrients (N, P, Fe and other trace metals) to the Low Nutrient Low Chlorophyll EMS. In such ultra-oligotrophic environment the leachable nutrients from dry atmospheric inputs add significant quantities of nutrients and become rapidly (<2hrs) bioavailable influencing substantially biogeochemical processes. Experimental additions triggered an increase in several of the performed rate and state variables as bacterial production and abundance, primary production rates and chlorophyll a (or other phytopigments), abundance of certain pico and nanophytoplankton groups and nitrogen fixation rates. Understanding these relationships is important to follow the pathways of N, P (and C) into the EMS food web and the future climate- and human-induced changes in the EMS.

  19. Using complex resistivity imaging to infer biogeochemical processes associated with bioremediation of a uranium-contaminated aquifer

    SciTech Connect

    Orozco, A. Flores; Williams, K.H.; Long, P.E.; Hubbard, S.S.; Kemna, A.

    2011-04-01

    Experiments at the Department of Energy's Rifle Integrated Field Research Challenge (IFRC) site near Rifle, Colorado (USA) have demonstrated the ability to remove uranium from groundwater by stimulating the growth and activity of Geobacter species through acetate amendment. Prolonging the activity of these strains in order to optimize uranium bioremediation has prompted the development of minimally-invasive and spatially-extensive monitoring methods diagnostic of their in situ activity and the end products of their metabolism. Here we demonstrate the use of complex resistivity imaging for monitoring biogeochemical changes accompanying stimulation of indigenous aquifer microorganisms during and after a prolonged period (100+ days) of acetate injection. A thorough raw-data statistical analysis of discrepancies between normal and reciprocal measurements and incorporation of a new power-law phase-error model in the inversion were used to significantly improve the quality of the resistivity phase images over those obtained during previous monitoring experiments at the Rifle IRFC site. The imaging results reveal spatiotemporal changes in the phase response of aquifer sediments, which correlate with increases in Fe(II) and precipitation of metal sulfides (e.g., FeS) following the iterative stimulation of iron and sulfate reducing microorganism. Only modest changes in resistivity magnitude were observed over the monitoring period. The largest phase anomalies (>40 mrad) were observed hundreds of days after halting acetate injection, in conjunction with accumulation of Fe(II) in the presence of residual FeS minerals, reflecting preservation of geochemically reduced conditions in the aquifer - a prerequisite for ensuring the long-term stability of immobilized, redox-sensitive contaminants, such as uranium.

  20. Using complex resistivity imaging to infer biogeochemical processes associated with bioremediation of a uranium-contaminated aquifer

    SciTech Connect

    Flores-Orozco, Adrian; Williams, Kenneth H.; Long, Philip E.; Hubbard, Susan S.; Kemna, Andreas

    2011-07-07

    Experiments at the Department of Energy’s Rifle Integrated Field Research Challenge (IFRC) site near Rifle, Colorado (USA) have demonstrated the ability to remove uranium from groundwater by stimulating the growth and activity of Geobacter species through acetate amendment. Prolonging the activity of these strains in order to optimize uranium bioremediation has prompted the development of minimally-invasive and spatially-extensive monitoring methods diagnostic of their in situ activity and the end products of their metabolism. Here we demonstrate the use of complex resistivity imaging for monitoring biogeochemical changes accompanying stimulation of indigenous aquifer microorganisms during and after a prolonged period (100+ days) of acetate injection. A thorough raw-data statistical analysis of discrepancies between normal and reciprocal measurements and incorporation of a new power-law phase-error model in the inversion were used to significantly improve the quality of the resistivity phase images over those obtained during previous monitoring experiments at the Rifle IRFC site. The imaging results reveal spatiotemporal changes in the phase response of aquifer sediments, which correlate with increases in Fe(II) and precipitation of metal sulfides (e.g., FeS) following the iterative stimulation of iron and sulfate reducing microorganism. Only modest changes in resistivity magnitude were observed over the monitoring period. The largest phase anomalies (>40 mrad) were observed hundreds of days after halting acetate injection, in conjunction with accumulation of Fe(II) in the presence of residual FeS minerals, reflecting preservation of geochemically reduced conditions in the aquifer – a prerequisite for ensuring the long-term stability of immobilized, redox-sensitive contaminants, such as uranium.

  1. Using complex resistivity imaging to infer biogeochemical processes associated with bioremediation of an uranium-contaminated aquifer

    NASA Astrophysics Data System (ADS)

    Flores Orozco, AdriáN.; Williams, Kenneth H.; Long, Philip E.; Hubbard, Susan S.; Kemna, Andreas

    2011-09-01

    Experiments at the Department of Energy's Integrated Field Research Challenge (IFRC) site near Rifle, Colorado, have demonstrated the ability to remove uranium from groundwater by stimulating the growth and activity of Geobacter species through acetate amendment. Prolonging the activity of these strains in order to optimize uranium bioremediation has prompted the development of minimally invasive and spatially extensive monitoring methods diagnostic of their in situ activity and the end products of their metabolism. Here we demonstrate the use of complex resistivity imaging for monitoring biogeochemical changes accompanying stimulation of indigenous aquifer microorganisms during and after a prolonged period (100+ days) of acetate injection. A thorough raw data statistical analysis of discrepancies between normal and reciprocal measurements and incorporation of a new power law phase-error model in the inversion were used to significantly improve the quality of the resistivity phase images over those obtained during previous monitoring experiments at the Rifle IFRC site. The imaging results reveal spatiotemporal changes in the phase response of aquifer sediments, which correlate with increases in Fe(II) and precipitation of metal sulfides (e.g., FeS) following the iterative stimulation of iron and sulfate-reducing microorganisms. Only modest changes in resistivity magnitude were observed over the monitoring period. The largest phase anomalies (>40 mrad) were observed hundreds of days after halting acetate injection, in conjunction with accumulation of Fe(II) in the presence of residual FeS minerals, reflecting preservation of geochemically reduced conditions in the aquifer, a prerequisite for ensuring the long-term stability of immobilized, redox-sensitive contaminants such as uranium.

  2. Biogeochemical Processes leading to release of As and Mn in the groundwaters of Murshidabad District of West Bengal, India

    NASA Astrophysics Data System (ADS)

    Johannesson, K. H.; Datta, S.; Vega, M.; Berube, M.

    2015-12-01

    Elevated concentrations of both manganese (Mn) and arsenic (As) have been observed in the groundwaters of Murshidabad, in eastern India. Mn, a postulated neurotoxin is known to cause neuromuscular problems, inhibition of neurological development particularly in children. The health impacts from higher bioavailable proportions of As is well known in being a Class I carcinogen. The discovery of this additional contaminant in the already As afflicted regions of SE Asia poses serious implications for millions of inhabitants. The current study aims to address three objectives in understanding biogeochemical cycling of Mn and As in groundwaters: i) the occurrence and overall distribution (lateral and temporal) of groundwater Mn and As; ii) characterization of the dissolved organic matter and microbial content and the resultant effects that are imposed on dissolved As and Mn; and iii) the relationship between Mn, As, and various other inorganic constituents and their impact on the subsequent release of Mn, on top of As. A three year time series of chemical data for the dissolved constituents from six villages in Murshidabad will be presented. Hariharpara, Beldanga, Naoda villages contain reducing groundwaters (mean Mn: 0.93mg/L); Nabagram, Kandi, Khidirpore demonstrate oxidizing aquifers (Mn: 0.74mg/L). Eighty-three percent of the wells surveyed contain Mn levels that exceed the recommended WHO limit of 0.4 mg/L. Dissolved As within the same locations show a range from <10μg/L to ~4000 μg/L. DOC values demonstrate a positive correlation with Mn in reducing and a negative correlation in oxidizing environments. The reducing aquifers are also high in As and DOC, indicating that the microbially mediated reductive dissolution of As-sorbed onto Fe-Mn mineral phases is probable. Fluorescence analyses of dissolved OM, solidphase modeling of Mn speciation are being combined in this study for more insight into the mechanisms of Mn release and its relation if any to As release.

  3. Linking the Modern and Recent Record of Cabo Frio Upwelling with Local Climate and Biogeochemical Processes in Hypersaline Coastal Lagoons, Região dos Lagos, Rio de Janeiro, Brazil

    NASA Astrophysics Data System (ADS)

    McKenzie, J. A.; Nascimento, G. S.; Albuquerque, A. L.; Belem, A. L.; Carreira, R.; Eglinton, T. I.; Vasconcelos, C.

    2015-12-01

    A unique marine and lagoonal system along the coast east of Rio de Janeiro is being investigated to understand the impact of climatic variability on the South Atlantic carbon cycle and biomineralisation processes involved in carbonate precipitation in the hypersaline coastal lagoons. The region is dominated by a semi-arid microclimate attributed to the local coastal upwelling phenomenon near Cabo Frio. The intensity of the upwelling affects the hydrology of the annual water and biogeochemical cycles in the lagoons, as well as biogeochemical signals of environmental change recorded in both onshore and offshore sediments. Preliminary results of δ18O and δD values of water samples collected monthly in Lagoa Vermelha and Brejo do Espinho from 2011 to 2014 show lower values for waters corresponding to the wet season, reflecting increased input of meteoric water. The higher values for waters collected during the dry season reflect the greater amount of evaporation with increased seasonal aridity. Radiocarbon dating of Holocene marine and lagoonal cores indicates that Mg-carbonate precipitation in the lagoons is associated with high evaporation. Modern field observations for the last 3 years suggest that the amount of carbonate precipitation is correlated with evaporitic conditions associated with the upwelling phenomenon. A calibration study of hydrogen isotopic fractionation in the modern lagoons is underway to define a relationship between δDlipid of suspended particles and δDwater of associated water. This isotopic relationship will be applied to material obtained in cores from the lagoons. Offshore cores will be studied using well-tested paleotemperature proxies to evaluate the intensity of the upwelling during the Holocene. In summary, linking the coastal upwelling with the lagoonal hydrology has the potential to furnish important insights about the relationship between the local climate and paleoceanographic circulation associated with the regional carbon cycle.

  4. Biogeochemical and Hydrological Heterogeneity and Emergent Archetypical Catchment Response Patterns

    NASA Astrophysics Data System (ADS)

    Jawitz, J. W.; Gall, H. E.; Rao, P. S.

    2014-12-01

    What can stream hydrologic and biogeochemical signals tell us about interactions among spatially heterogeneous hydrological and biogeochemical processes at the catchment-scale? We seek to understand how the spatial structure of solute sources coupled with both stationary and nonstationary hydroclimatic drivers affect observed archetypes of concentration-discharge (C-Q) patterns. These response patterns are the spatially integrated expressions of the spatiotemporal structure of solutes exported from managed catchments, and can provide insight into likely ecological consequences of receiving water bodies (e.g., wetlands, rivers, lakes, and coastal waters). We investigated the following broad questions: (1) How does the spatial correlation between the structure of flow-generating areas and biogeochemical source areas across a catchment evolve under stochastic hydro-climatic forcing? (2) What are the feasible hydrologic and biogeochemical responses that lead to the emergence of archetypical C-Q patterns? and; (3) What implications do these coupled dynamics have for catchment monitoring and implementation of management practices? We categorize the observed temporal signals into three archetypical C-Q patterns: dilution; accretion, and constant concentration. We applied a parsimonious stochastic model of heterogeneous catchments, which act as hydrologic and biogeochemical filters, to examine the relationship between spatial heterogeneity and temporal history of solute export signals. The core concept of the modeling framework is considering the type and degree of spatial correlation between solute source zones and flow generating zones, and activation of different portions of the catchments during rainfall events. Our overarching hypothesis is that each archetype C-Q pattern can be generated by explicitly linking landscape-scale hydrologic responses and spatial distributions of solute source properties within a catchment. We compared observed multidecadal data to

  5. Dilution, Not Load, Affects Distractor Processing

    ERIC Educational Resources Information Center

    Wilson, Daryl E.; Muroi, Miya; MacLeod, Colin M.

    2011-01-01

    Lavie and Tsal (1994) proposed that spare attentional capacity is allocated involuntarily to the processing of irrelevant stimuli, thereby enabling interference. Under this view, when task demands increase, spare capacity should decrease and distractor interference should decrease. In support, Lavie and Cox (1997) found that increasing perceptual…

  6. Sound Affects the Speed of Visual Processing

    ERIC Educational Resources Information Center

    Keetels, Mirjam; Vroomen, Jean

    2011-01-01

    The authors examined the effects of a task-irrelevant sound on visual processing. Participants were presented with revolving clocks at or around central fixation and reported the hand position of a target clock at the time an exogenous cue (1 clock turning red) or an endogenous cue (a line pointing toward 1 of the clocks) was presented. A…

  7. Auditory motion affects visual biological motion processing.

    PubMed

    Brooks, A; van der Zwan, R; Billard, A; Petreska, B; Clarke, S; Blanke, O

    2007-02-01

    The processing of biological motion is a critical, everyday task performed with remarkable efficiency by human sensory systems. Interest in this ability has focused to a large extent on biological motion processing in the visual modality (see, for example, Cutting, J. E., Moore, C., & Morrison, R. (1988). Masking the motions of human gait. Perception and Psychophysics, 44(4), 339-347). In naturalistic settings, however, it is often the case that biological motion is defined by input to more than one sensory modality. For this reason, here in a series of experiments we investigate behavioural correlates of multisensory, in particular audiovisual, integration in the processing of biological motion cues. More specifically, using a new psychophysical paradigm we investigate the effect of suprathreshold auditory motion on perceptions of visually defined biological motion. Unlike data from previous studies investigating audiovisual integration in linear motion processing [Meyer, G. F. & Wuerger, S. M. (2001). Cross-modal integration of auditory and visual motion signals. Neuroreport, 12(11), 2557-2560; Wuerger, S. M., Hofbauer, M., & Meyer, G. F. (2003). The integration of auditory and motion signals at threshold. Perception and Psychophysics, 65(8), 1188-1196; Alais, D. & Burr, D. (2004). No direction-specific bimodal facilitation for audiovisual motion detection. Cognitive Brain Research, 19, 185-194], we report the existence of direction-selective effects: relative to control (stationary) auditory conditions, auditory motion in the same direction as the visually defined biological motion target increased its detectability, whereas auditory motion in the opposite direction had the inverse effect. Our data suggest these effects do not arise through general shifts in visuo-spatial attention, but instead are a consequence of motion-sensitive, direction-tuned integration mechanisms that are, if not unique to biological visual motion, at least not common to all types of

  8. Low temperature alteration processes affecting ultramafic bodies

    USGS Publications Warehouse

    Nesbitt, H.W.; Bricker, O.P.

    1978-01-01

    At low temperatures, in the presence of an aqueous solution, olivine and orthopyroxene are not stable relative to the hydrous phases brucite, serpentine and talc. Alteration of dunite and peridotite to serpentine or steatite bodies must therefore proceed via non-equilibrium processes. The compositions of natural solutions emanating from dunites and peridotites demonstrate that the dissolution of forsterite and/or enstatite is rapid compared with the precipitation of the hydrous phases; consequently, dissolution of anhydrous minerals controls the chemistry of such solutions. In the presence of an aqueous phase, precipitation of hydrous minerals is the rate-controlling step. Brucite-bearing and -deficient serpentinites alter at low temperature by non-equilibrium processes, as evidenced by the composition of natural solutions from these bodies. The solutions approach equilibrium with the least stable hydrous phase and, as a consequence, are supersaturated with other hydrous phases. Dissolution of the least stable phase is rapid compared to precipitation of other phases, so that the dissolving mineral controls the solution chemistry. Non-equilibrium alteration of anhydrous ultramafic bodies continues until at least one anhydrous phase equilibrates with brucite, chrysotile or talc. The lowest temperature (at a given pressure) at which this happens is defined by the reaction: 3H2O + 2Mg2SiO4 ??? Mg3Si2O5(OH)4 + Mg(OH)2 (Johannes, 1968, Contrib. Mineral. Petrol. 19, 309-315) so that non-equilibrium alteration may occur well into greenschist facies metamorphic conditions. ?? 1978.

  9. Effect of sulfidogenesis cycling on the biogeochemical process in arsenic-enriched aquifers in the Lanyang Plain of Taiwan: Evidence from a sulfur isotope study

    NASA Astrophysics Data System (ADS)

    Kao, Yu-Hsuan; Liu, Chen-Wuing; Wang, Pei-Ling; Liao, Chung-Min

    2015-09-01

    This study evaluated the biogeochemical interactions between arsenic (As) and sulfur (S) in groundwater to understand the natural and anthropogenic influences of S redox processes on As mobilization in the Lanyang Plain, Taiwan. Cl- and the sulfate isotopic composition (δ34S[SO4]) were selected as conservative tracers. River water and saline seawater were considered as end members in the binary mixing model. Thirty-two groundwater samples were divided into four types of groundwater (I, pyrite-oxidation; II, iron- and sulfate-reducing; III, sulfate-reducing; and IV, anthropogenic and others). The binary mixing model coupled with discriminant analysis was applied to yield a classification with 97% correctness, indicating that the DO/ORP values and δ34S[SO4] and Fe2+ concentrations are effective redox-sensitive indicators. Type I groundwater is mostly located in a mountainous recharge area where pyrite oxidation is the major geochemical process. A high 18O enrichment factor (ε[SO4-H2O]) and high 34S enrichment factor (ε34S[FeS2-SO4]) indicate that disproportionation and dissimilatory sulfate reduction are both involved in Type II and Type III groundwater. The process of bacterial sulfate reduction may coprecipitate and sequester As, a mechanism that is unlikely to occur in Type II groundwater. The presence of high As and Fe2+ concentrations and enriched δ34S[SO4] in Type II groundwater suggest that biogeochemical reactions occurred under anaerobic conditions. The reductive dissolution of As-bearing Fe oxyhydroxides together with microbial disproportionation of sulfur explains the substantial correlations among the high As concentration and enriched δ34S[SO4] and Fe2+ concentrations in the iron- and sulfate-reducing zone (Type II). The As concentration in Type III groundwater (sulfate-reducing) is lower than that in Type II groundwater because of bacterial sulfate reduction and coprecipitation with As. Furthermore, the dissolution of sulfate minerals is not the

  10. Oceanographic and Biogeochemical Insights from Diatom Genomes

    NASA Astrophysics Data System (ADS)

    Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

    2010-01-01

    Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

  11. Cloud Processed CCN Affect Cloud Microphysics

    NASA Astrophysics Data System (ADS)

    Hudson, J. G.; Noble, S. R., Jr.; Tabor, S. S.

    2015-12-01

    Variations in the bimodality/monomodality of CCN spectra (Hudson et al. 2015) exert opposite effects on cloud microphysics in two aircraft field projects. The figure shows two examples, droplet concentration, Nc, and drizzle liquid water content, Ld, against classification of CCN spectral modality. Low ratings go to balanced separated bimodal spectra, high ratings go to single mode spectra, strictly monomodal 8. Intermediate ratings go merged modes, e.g., one mode a shoulder of another. Bimodality is caused by mass or hygroscopicity increases that go only to CCN that made activated cloud droplets. In the Ice in Clouds Experiment-Tropical (ICE-T) small cumuli with lower Nc, greater droplet mean diameters, MD, effective radii, re, spectral widths, σ, cloud liquid water contents, Lc, and Ld were closer to more bimodal (lower modal ratings) below cloud CCN spectra whereas clouds with higher Nc, smaller MD, re, σ, and Ld were closer to more monomodal CCN (higher modal ratings). In polluted stratus clouds of the MArine Stratus/Stratocumulus Experiment (MASE) clouds that had greater Nc, and smaller MD, re, σ, Lc, and Ld were closer to more bimodal CCN spectra whereas clouds with lower Nc, and greater MD, re, σ, Lc, and Ld were closer to more monomodal CCN. These relationships are opposite because the dominant ICE-T cloud processing was coalescence whereas chemical transformations (e.g., SO2 to SO4) were dominant in MASE. Coalescence reduces Nc and thus also CCN concentrations (NCCN) when droplets evaporate. In subsequent clouds the reduced competition increases MD and σ, which further enhance coalescence and drizzle. Chemical transformations do not change Nc but added sulfate enhances droplet and CCN solubility. Thus, lower critical supersaturation (S) CCN can produce more cloud droplets in subsequent cloud cycles, especially for the low W and effective S of stratus. The increased competition reduces MD, re, and σ, which inhibit coalescence and thus reduce drizzle

  12. Quantification of terrestrial ecosystem carbon dynamics in the conterminous United States combining a process-based biogeochemical model and MODIS and AmeriFlux data

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Satellite remote sensing provides continuous temporal and spatial information of terrestrial ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical models, such as the Terrestrial Ecosystem Model (TEM), should provide a more adequate quantification of carbon dynami...

  13. Biogeochemical factors affecting the distribution, speciation, and transport of Hg species in the Deûle and Lys Rivers (Northern France).

    PubMed

    Daye, Mirna; Kadlecova, Milada; Ouddane, Baghdad

    2015-02-01

    The Deûle River is a highly polluted River by heavy metals caused by the historical discharges of ore minerals from the former ore smelter "Metaleurop." The potential mercury (Hg) pollution in the Deûle River implicates the importance of Hg distribution study in the river. As well as to configure the different biogeochemical factors that control the distribution and the potential transport of Hg to distant places. Four different sites were studied as follows: D-A (Deûle River, a site located upstream the river), D-B (Deûle River, a site located near a Zn, Pb, Cu, and Ni smelter that closed in 2003), L-C (Lys River, a site located upstream the confluence of the Deûle River with Lys River), and L-D (downstream the rivers confluence). Different Hg analyses were performed including total mercury in sediment (HgTS), methylmercury (MeHg) in sediment, total mercury in pore water (HgTPW), total mercury in surface water (HgTD), and total suspended particulate Hg in water (HgTP). HgTS decreases downstream from the Deûle River sites with a mean value of 11 ± 0.34 mg/kg to Lys River site (L-D) with a mean value of 0.53 ± 0.02 mg/kg at the confluence. The unaffected side of the Lys River, localized before the confluence (L-C), is characterized by low HgTS of an average value of 0.042 ± 0.003 mg/kg and high % MeHg reaching 4.2 %. Whereas, the highly contaminated Deûle sites are designated by low % MeHg with an average value of 0.053 %. Low pristine environments like that found in L-C site with more favorable biogeochemical conditions of lower concentrations of HgTS, sulfides, and Corg host more active biotic methylation than that of the highly polluted Deûle sites with high concentrations of HgTS and sulfides concentrations. Methylation in D-B (the closet site to Metaleurop smelter) is an old and recent methylation activity that has contributed to MeHg accumulation in the sediments as opposed to the exclusive recent events of methylation in Lys sites. Me

  14. Studies of dynamical processes affecting global climate

    SciTech Connect

    Keller, C.; Cooper, D.; Eichinger, W.

    1998-12-31

    This is the final report of a three-year, Laboratory Directed Research and Development project at the Los Alamos National Laboratory (LANL). The main objective was, by a combined theoretical and observational approach, to develop improved models of dynamic processes in the oceans and atmosphere and to incorporate them into large climate codes, chiefly in four main areas: numerical physics, chemistry, water vapor, and ocean-atmosphere interactions. Main areas of investigation included studies of: cloud parameterizations for global climate codes, Lidar and the planetary boundary layer, chemistry, climate variability using coupled ocean-atmospheric models, and numerical physical methods. This project employed a unique approach that included participation of a number of University of California faculty, postdoctoral fellows and graduate students who collaborated with Los Alamos research staff on specific tasks, thus greatly enhancing the research output. Overall accomplishments during the sensing of the atmospheric planetary were: (1) first two- and three-dimensional remote sensing of the atmospheric planetary boundary layer using Lidars, (2) modeling of 20-year cycle in both pressure and sea surface temperatures in North Pacific, (3) modeling of low frequency internal variability, (4) addition of aerosols to stratosphere to simulate Pinatubo effect on ozone, (5) development of fast, comprehensive chemistry in the troposphere for urban pollution studies, (6) new prognostic cloud parameterization in global atmospheric code remedied problems with North Pacific atmospheric circulation and excessive equatorial precipitation, (7) development of a unique aerosol analysis technique, the aerosol time-of-flight mass spectrometer (ATOFMS), which allows real-time analysis of the size and chemical composition of individual aerosol particles, and (8) numerical physics applying Approximate Inertial Manifolds to ocean circulation. 14 refs., 6 figs.

  15. Implicit affectivity and rapid processing of affective body language: An fMRI study.

    PubMed

    Suslow, Thomas; Ihme, Klas; Quirin, Markus; Lichev, Vladimir; Rosenberg, Nicole; Bauer, Jochen; Bomberg, Luise; Kersting, Anette; Hoffmann, Karl-Titus; Lobsien, Donald

    2015-10-01

    Previous research has revealed affect-congruity effects for the recognition of affects from faces. Little is known about the impact of affect on the perception of body language. The aim of the present study was to investigate the relationship of implicit (versus explicit) affectivity with the recognition of briefly presented affective body expressions. Implicit affectivity, which can be measured using indirect assessment methods, has been found to be more predictive of spontaneous physiological reactions than explicit (self-reported) affect. Thirty-four healthy women had to label the expression of body postures (angry, fearful, happy, or neutral) presented for 66 ms and masked by a neutral body posture in a forced-choice format while undergoing functional magnetic resonance imaging (fMRI). Participants' implicit affectivity was assessed using the Implicit Positive and Negative Affect Test. Measures of explicit state and trait affectivity were also administered. Analysis of the fMRI data was focused on a subcortical network involved in the rapid perception of affective body expressions. Only implicit negative affect (but not explicit affect) was correlated with correct labeling performance for angry body posture. As expected, implicit negative affect was positively associated with activation of the subcortical network in response to fearful and angry expression (compared to neutral expression). Responses of the caudate nucleus to affective body expression were especially associated with its recognition. It appears that processes of rapid recognition of affects from body postures could be facilitated by an individual's implicit negative affect. PMID:26032148

  16. Elaboration Likelihood and the Counseling Process: The Role of Affect.

    ERIC Educational Resources Information Center

    Stoltenberg, Cal D.; And Others

    The role of affect in counseling has been examined from several orientations. The depth of processing model views the efficiency of information processing as a function of the extent to which the information is processed. The notion of cognitive processing capacity states that processing information at deeper levels engages more of one's limited…

  17. Incorporating microbes into large-scale biogeochemical models

    NASA Astrophysics Data System (ADS)

    Allison, S. D.; Martiny, J. B.

    2008-12-01

    Micro-organisms, including Bacteria, Archaea, and Fungi, control major processes throughout the Earth system. Recent advances in microbial ecology and microbiology have revealed an astounding level of genetic and metabolic diversity in microbial communities. However, a framework for interpreting the meaning of this diversity has lagged behind the initial discoveries. Microbial communities have yet to be included explicitly in any major biogeochemical models in terrestrial ecosystems, and have only recently broken into ocean models. Although simplification of microbial communities is essential in complex systems, omission of community parameters may seriously compromise model predictions of biogeochemical processes. Two key questions arise from this tradeoff: 1) When and where must microbial community parameters be included in biogeochemical models? 2) If microbial communities are important, how should they be simplified, aggregated, and parameterized in models? To address these questions, we conducted a meta-analysis to determine if microbial communities are sensitive to four environmental disturbances that are associated with global change. In all cases, we found that community composition changed significantly following disturbance. However, the implications for ecosystem function were unclear in most of the published studies. Therefore, we developed a simple model framework to illustrate the situations in which microbial community changes would affect rates of biogeochemical processes. We found that these scenarios could be quite common, but powerful predictive models cannot be developed without much more information on the functions and disturbance responses of microbial taxa. Small-scale models that explicitly incorporate microbial communities also suggest that process rates strongly depend on microbial interactions and disturbance responses. The challenge is to scale up these models to make predictions at the ecosystem and global scales based on measurable

  18. Measurements of spectral optical properties and their relation to biogeochemical variables and processes in Crater Lake, Crater Lake National Park, OR

    USGS Publications Warehouse

    Boss, E.S.; Collier, R.; Larson, G.; Fennel, K.; Pegau, W.S.

    2007-01-01

    Spectral inherent optical properties (IOPs) have been measured at Crater Lake, OR, an extremely clear sub-alpine lake. Indeed Pure water IOPs are major contributors to the total IOPs, and thus to the color of the lake. Variations in the spatial distribution of IOPs were observed in June and September 2001, and reflect biogeochemical processes in the lake. Absorption by colored dissolved organic material increases with depth and between June and September in the upper 300 m. This pattern is consistent with a net release of dissolved organic materials from primary and secondary production through the summer and its photo-oxidation near the surface. Waters fed by a tributary near the lake's rim exhibited low levels of absorption by dissolved organic materials. Scattering is mostly dominated by organic particulate material, though inorganic material is found to enter the lake from the rim following a rain storm. Several similarities to oceanic oligotrophic regions are observed: (a) The Beam attenuation correlates well with particulate organic material (POM) and the relationship is similar to that observed in the open ocean. (b) The specific absorption of colored dissolved organic material has a value similar to that of open ocean humic material. (c) The distribution of chlorophyll with depth does not follow the distribution of particulate organic material due to photo-acclimation resulting in a subsurface pigment maximum located about 50 m below the POM maximum. ?? 2007 Springer Science+Business Media B.V.

  19. Mapping pan-Arctic CH4 emissions using an adjoint method by integrating process-based wetland and lake biogeochemical models and atmospheric CH4 concentrations

    NASA Astrophysics Data System (ADS)

    Tan, Z.; Zhuang, Q.; Henze, D. K.; Frankenberg, C.; Dlugokencky, E. J.; Sweeney, C.; Turner, A. J.

    2015-12-01

    Understanding CH4 emissions from wetlands and lakes are critical for the estimation of Arctic carbon balance under fast warming climatic conditions. To date, our knowledge about these two CH4 sources is almost solely built on the upscaling of discontinuous measurements in limited areas to the whole region. Many studies indicated that, the controls of CH4 emissions from wetlands and lakes including soil moisture, lake morphology and substrate content and quality are notoriously heterogeneous, thus the accuracy of those simple estimates could be questionable. Here we apply a high spatial resolution atmospheric inverse model (nested-grid GEOS-Chem Adjoint) over the Arctic by integrating SCIAMACHY and NOAA/ESRL CH4 measurements to constrain the CH4 emissions estimated with process-based wetland and lake biogeochemical models. Our modeling experiments using different wetland CH4 emission schemes and satellite and surface measurements show that the total amount of CH4 emitted from the Arctic wetlands is well constrained, but the spatial distribution of CH4 emissions is sensitive to priors. For CH4 emissions from lakes, our high-resolution inversion shows that the models overestimate CH4 emissions in Alaskan costal lowlands and East Siberian lowlands. Our study also indicates that the precision and coverage of measurements need to be improved to achieve more accurate high-resolution estimates.

  20. Improving predictions of large scale soil carbon dynamics: Integration of fine-scale hydrological and biogeochemical processes, scaling, and benchmarking

    NASA Astrophysics Data System (ADS)

    Riley, W. J.; Dwivedi, D.; Ghimire, B.; Hoffman, F. M.; Pau, G. S. H.; Randerson, J. T.; Shen, C.; Tang, J.; Zhu, Q.

    2015-12-01

    Numerical model representations of decadal- to centennial-scale soil-carbon dynamics are a dominant cause of uncertainty in climate change predictions. Recent attempts by some Earth System Model (ESM) teams to integrate previously unrepresented soil processes (e.g., explicit microbial processes, abiotic interactions with mineral surfaces, vertical transport), poor performance of many ESM land models against large-scale and experimental manipulation observations, and complexities associated with spatial heterogeneity highlight the nascent nature of our community's ability to accurately predict future soil carbon dynamics. I will present recent work from our group to develop a modeling framework to integrate pore-, column-, watershed-, and global-scale soil process representations into an ESM (ACME), and apply the International Land Model Benchmarking (ILAMB) package for evaluation. At the column scale and across a wide range of sites, observed depth-resolved carbon stocks and their 14C derived turnover times can be explained by a model with explicit representation of two microbial populations, a simple representation of mineralogy, and vertical transport. Integrating soil and plant dynamics requires a 'process-scaling' approach, since all aspects of the multi-nutrient system cannot be explicitly resolved at ESM scales. I will show that one approach, the Equilibrium Chemistry Approximation, improves predictions of forest nitrogen and phosphorus experimental manipulations and leads to very different global soil carbon predictions. Translating model representations from the site- to ESM-scale requires a spatial scaling approach that either explicitly resolves the relevant processes, or more practically, accounts for fine-resolution dynamics at coarser scales. To that end, I will present recent watershed-scale modeling work that applies reduced order model methods to accurately scale fine-resolution soil carbon dynamics to coarse-resolution simulations. Finally, we

  1. Searching for Biogeochemical Cycles on Mars

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.

    1997-01-01

    The search for life on Mars clearly benefits from a rigorous, yet broad, definition of life that compels us to consider all possible lines of evidence for a martian biosphere. Recent studies in microbial ecology illustrate that the classic definition of life should be expanded beyond the traditional definition of a living cell. The traditional defining characteristics of life are threefold. First, life is capable of metabolism, that is, it performs chemical reactions that utilize energy and also synthesize its cellular constituents. Second, life is capable of self-replication. Third, life can evolve in order to adapt to environmental changes. An expanded, ecological definition of life also recognizes that life is a community of organisms that must interact with their nonliving environment through processes called biogeochemical cycles. This regenerative processing maintains, in an aqueous conditions, a dependable supply of nutrients and energy for growth. In turn, life can significantly affect those processes that control the exchange of materials between the atmosphere, ocean, and upper crust. Because metabolic processes interact directly with the environment, they can alter their surroundings and thus leave behind evidence of life. For example, organic matter is produced from single-carbon-atom precursors for the biosynthesis of cellular constituents. This leads to a reservoir of reduced carbon in sediments that, in turn, can affect the oxidation state of the atmosphere. The harvesting of chemical energy for metabolism often employs oxidation-reduction reactions that can alter the chemistry and oxidation state of the redox-sensitive elements carbon, sulfur, nitrogen, iron, and manganese. Have there ever been biogeochemical cycles on Mars? Certain key planetary processes can offer clues. Active volcanism provides reduced chemical species that biota can use for organic synthesis. Volcanic carbon dioxide and methane can serve as greenhouse gases. Thus the

  2. Inferring Group Processes from Computer-Mediated Affective Text Analysis

    SciTech Connect

    Schryver, Jack C; Begoli, Edmon; Jose, Ajith; Griffin, Christopher

    2011-02-01

    Political communications in the form of unstructured text convey rich connotative meaning that can reveal underlying group social processes. Previous research has focused on sentiment analysis at the document level, but we extend this analysis to sub-document levels through a detailed analysis of affective relationships between entities extracted from a document. Instead of pure sentiment analysis, which is just positive or negative, we explore nuances of affective meaning in 22 affect categories. Our affect propagation algorithm automatically calculates and displays extracted affective relationships among entities in graphical form in our prototype (TEAMSTER), starting with seed lists of affect terms. Several useful metrics are defined to infer underlying group processes by aggregating affective relationships discovered in a text. Our approach has been validated with annotated documents from the MPQA corpus, achieving a performance gain of 74% over comparable random guessers.

  3. Emotion-specific load disrupts concomitant affective processing.

    PubMed

    Vermeulen, Nicolas; Niedenthal, Paula M; Pleyers, Gordy; Bayot, Marie; Corneille, Olivier

    2014-01-01

    Findings in the neuroimaging literature suggest that separate brain circuitries are involved when individuals perform emotional compared to nonemotional working memory (WM) tasks. Here we test this hypothesis with behavioural measures. We predicted that the conceptual processing of affect would be disrupted more by concurrent affective than nonaffective load. Participants performed a conceptual task in which they verified affective versus sensory properties of concepts, and a second, concurrent, working memory (n-back) task in which the target stimuli were facial expressions. Results revealed that storing and updating affective (as compared with identity) features of facial expressions altered performance more for affective than for sensory properties of concepts. The findings are supportive of the ideas that affective resources exist and that these resources are specifically used during the processing and representation of affective properties of objects and events.

  4. Biogeochemical cycling and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.

    1985-01-01

    Research is underway at the NASA Ames Research Center that is concerned with aspects of the nitrogen cycle in terrestrial ecosystems. An interdisciplinary research group is attempting to correlate nitrogen transformations, processes, and productivity with variables that can be remotely sensed. Recent NASA and other publications concerning biogeochemical cycling at global scales identify attributes of vegetation that could be related or explain the spatial variation in biologically functional variables. These functional variables include net primary productivity, annual nitrogen mineralization, and possibly the emission rate of nitrous oxide from soils.

  5. An integrated water system model considering hydrological and biogeochemical processes at basin scale: model construction and application

    NASA Astrophysics Data System (ADS)

    Zhang, Y. Y.; Shao, Q. X.; Ye, A. Z.; Xing, H. T.

    2014-08-01

    Integrated water system modeling is a reasonable approach to provide scientific understanding and possible solutions to tackle the severe water crisis faced over the world and to promote the implementation of integrated river basin management. Such a modeling practice becomes more feasible nowadays due to better computing facilities and available data sources. In this study, the process-oriented water system model (HEXM) is developed by integrating multiple water related processes including hydrology, biogeochemistry, environment and ecology, as well as the interference of human activities. The model was tested in the Shaying River Catchment, the largest, highly regulated and heavily polluted tributary of Huai River Basin in China. The results show that: HEXM is well integrated with good performance on the key water related components in the complex catchments. The simulated daily runoff series at all the regulated and less-regulated stations matches observations, especially for the high and low flow events. The average values of correlation coefficient and coefficient of efficiency are 0.81 and 0.63, respectively. The dynamics of observed daily ammonia-nitrogen (NH4N) concentration, as an important index to assess water environmental quality in China, are well captured with average correlation coefficient of 0.66. Furthermore, the spatial patterns of nonpoint source pollutant load and grain yield are also simulated properly, and the outputs have good agreements with the statistics at city scale. Our model shows clear superior performance in both calibration and validation in comparison with the widely used SWAT model. This model is expected to give a strong reference for water system modeling in complex basins, and provide the scientific foundation for the implementation of integrated river basin management all over the world as well as the technical guide for the reasonable regulation of dams and sluices and environmental improvement in river basins.

  6. Effects of physical and biogeochemical processes on aquatic ecosystems at the groundwater-surface water interface: An evaluation of a sulfate-impacted wild rice stream in Minnesota (USA)

    NASA Astrophysics Data System (ADS)

    Ng, G. H. C.; Yourd, A. R.; Myrbo, A.; Johnson, N.

    2015-12-01

    Significant uncertainty and variability in physical and biogeochemical processes at the groundwater-surface water interface complicate how surface water chemistry affects aquatic ecosystems. Questions surrounding a unique 10 mg/L sulfate standard for wild rice (Zizania sp.) waters in Minnesota are driving research to clarify conditions controlling the geochemistry of shallow sediment porewater in stream- and lake-beds. This issue raises the need and opportunity to carry out in-depth, process-based analysis into how water fluxes and coupled C, S, and Fe redox cycles interact to impact aquatic plants. Our study builds on a recent state-wide field campaign that showed that accumulation of porewater sulfide from sulfate reduction impairs wild rice, an annual grass that grows in shallow lakes and streams in the Great Lakes region of North America. Negative porewater sulfide correlations with organic C and Fe quantities also indicated that lower redox rates and greater mineral precipitation attenuate sulfide. Here, we focus on a stream in northern Minnesota that receives high sulfate loading from iron mining activity yet maintains wild rice stands. In addition to organic C and Fe effects, we evaluate the degree to which streambed hydrology, and in particular groundwater contributions, accounts for the active biogeochemistry. We collect field measurements, spanning the surrounding groundwater system to the stream, to constrain a reactive-transport model. Observations from seepage meters, temperature probes, and monitoring wells delineate upward flow that may lessen surface water impacts below the stream. Geochemical analyses of groundwater, porewater, and surface water samples and of sediment extractions reveal distinctions among the different domains and stream banks, which appear to jointly control conditions in the streambed. A model based on field conditions can be used to evaluate the relative the importance and the spatiotemporal scales of diverse flux and

  7. Biogeochemical factors which regulate the formation and fate of sulfide in wetlands

    NASA Technical Reports Server (NTRS)

    Hines, Mark E.; Lyons, W. Berry; Gaudette, H. E.

    1992-01-01

    Coastal wetland areas occupy a small percentage of the terrestrial environment yet are extremely productive regions which support rapid rates of belowground bacterial activity. Wetlands appear to be significant as biogenic sources of gaseous sulfur, carbon, and nitrogen. These gases are important as tracers of man's activities, and they influence atmospheric chemistry. The interactions among wetland biogeochemical processes regulate the anaerobic production of reduced gases and influence the fate of these volatiles. Therefore, spatial and temporal variations in hydrology, salinity, temperature and specification, and growth of vegetation affect the type and magnitude of gas emissions thus hindering predictive estimates of gas flux. Our research is divided into two major components, the first is the biogeochemical characterization of a selected tidal wetland area in terms of factors likely to regulate sulfide flux; the second is a direct measurement of gaseous sulfur flux as related to changes in these biogeochemical conditions. Presently, we are near completion of phase one.

  8. Implicit Processing of Visual Emotions Is Affected by Sound-Induced Affective States and Individual Affective Traits

    PubMed Central

    Quarto, Tiziana; Blasi, Giuseppe; Pallesen, Karen Johanne; Bertolino, Alessandro; Brattico, Elvira

    2014-01-01

    The ability to recognize emotions contained in facial expressions are affected by both affective traits and states and varies widely between individuals. While affective traits are stable in time, affective states can be regulated more rapidly by environmental stimuli, such as music, that indirectly modulate the brain state. Here, we tested whether a relaxing or irritating sound environment affects implicit processing of facial expressions. Moreover, we investigated whether and how individual traits of anxiety and emotional control interact with this process. 32 healthy subjects performed an implicit emotion processing task (presented to subjects as a gender discrimination task) while the sound environment was defined either by a) a therapeutic music sequence (MusiCure), b) a noise sequence or c) silence. Individual changes in mood were sampled before and after the task by a computerized questionnaire. Additionally, emotional control and trait anxiety were assessed in a separate session by paper and pencil questionnaires. Results showed a better mood after the MusiCure condition compared with the other experimental conditions and faster responses to happy faces during MusiCure compared with angry faces during Noise. Moreover, individuals with higher trait anxiety were faster in performing the implicit emotion processing task during MusiCure compared with Silence. These findings suggest that sound-induced affective states are associated with differential responses to angry and happy emotional faces at an implicit stage of processing, and that a relaxing sound environment facilitates the implicit emotional processing in anxious individuals. PMID:25072162

  9. Integrated water system simulation by considering hydrological and biogeochemical processes: model development, with parameter sensitivity and autocalibration

    NASA Astrophysics Data System (ADS)

    Zhang, Y. Y.; Shao, Q. X.; Ye, A. Z.; Xing, H. T.; Xia, J.

    2016-02-01

    Integrated water system modeling is a feasible approach to understanding severe water crises in the world and promoting the implementation of integrated river basin management. In this study, a classic hydrological model (the time variant gain model: TVGM) was extended to an integrated water system model by coupling multiple water-related processes in hydrology, biogeochemistry, water quality, and ecology, and considering the interference of human activities. A parameter analysis tool, which included sensitivity analysis, autocalibration and model performance evaluation, was developed to improve modeling efficiency. To demonstrate the model performances, the Shaying River catchment, which is the largest highly regulated and heavily polluted tributary of the Huai River basin in China, was selected as the case study area. The model performances were evaluated on the key water-related components including runoff, water quality, diffuse pollution load (or nonpoint sources) and crop yield. Results showed that our proposed model simulated most components reasonably well. The simulated daily runoff at most regulated and less-regulated stations matched well with the observations. The average correlation coefficient and Nash-Sutcliffe efficiency were 0.85 and 0.70, respectively. Both the simulated low and high flows at most stations were improved when the dam regulation was considered. The daily ammonium-nitrogen (NH4-N) concentration was also well captured with the average correlation coefficient of 0.67. Furthermore, the diffuse source load of NH4-N and the corn yield were reasonably simulated at the administrative region scale. This integrated water system model is expected to improve the simulation performances with extension to more model functionalities, and to provide a scientific basis for the implementation in integrated river basin managements.

  10. Genome-Enabled Modeling of Biogeochemical Processes Predicts Metabolic Dependencies that Connect the Relative Fitness of Microbial Functional Guilds

    NASA Astrophysics Data System (ADS)

    Brodie, E.; King, E.; Molins, S.; Karaoz, U.; Steefel, C. I.; Banfield, J. F.; Beller, H. R.; Anantharaman, K.; Ligocki, T. J.; Trebotich, D.

    2015-12-01

    Pore-scale processes mediated by microorganisms underlie a range of critical ecosystem services, regulating carbon stability, nutrient flux, and the purification of water. Advances in cultivation-independent approaches now provide us with the ability to reconstruct thousands of genomes from microbial populations from which functional roles may be assigned. With this capability to reveal microbial metabolic potential, the next step is to put these microbes back where they belong to interact with their natural environment, i.e. the pore scale. At this scale, microorganisms communicate, cooperate and compete across their fitness landscapes with communities emerging that feedback on the physical and chemical properties of their environment, ultimately altering the fitness landscape and selecting for new microbial communities with new properties and so on. We have developed a trait-based model of microbial activity that simulates coupled functional guilds that are parameterized with unique combinations of traits that govern fitness under dynamic conditions. Using a reactive transport framework, we simulate the thermodynamics of coupled electron donor-acceptor reactions to predict energy available for cellular maintenance, respiration, biomass development, and enzyme production. From metagenomics, we directly estimate some trait values related to growth and identify the linkage of key traits associated with respiration and fermentation, macromolecule depolymerizing enzymes, and other key functions such as nitrogen fixation. Our simulations were carried out to explore abiotic controls on community emergence such as seasonally fluctuating water table regimes across floodplain organic matter hotspots. Simulations and metagenomic/metatranscriptomic observations highlighted the many dependencies connecting the relative fitness of functional guilds and the importance of chemolithoautotrophic lifestyles. Using an X-Ray microCT-derived soil microaggregate physical model combined

  11. Biogeochemical and hydrological processes controlling the transport and fate of 1,2-dibromoethane (EDB) in soil and ground water, central Florida

    USGS Publications Warehouse

    Katz, Brian G.

    1993-01-01

    Widespread contamination of ground water in central Florida by 1,2-dibromoethane (EDB) has resulted because of its heavy usage as a soil fumigant during a 20-year period, its relatively high aqueous solubility, and the low sorption capacity of the highly permeable sandy soils lacking organic matter. Two models were used to improve understanding of biogeochemical and hydrological processes that control the transport and fate of EDB in soil and ground water. First, a mass-balance model was developed to estimate the max-imum concentration of EDB in ground water resulting from known application rates of EDB. Key processes that were quantified in the model included volatilization, diffusion of EDB vapor in soils, partitioning between aqueous and gaseous phases, sorption of EDB vapor on organic carbon and soil particles, chemical and biological degradation reactions, and nonreversible binding of EDB to soils. Model calculations using an EDB half-life of 0.65 year closely reproduced the maximum observed concentrations in ground water, 37 and 0.22 micrograms per liter, at downgradient sites in two study areas in central Florida. Maximum concentrations of EDB in ground water also were estimated in a second model that incorporated an analytical solution to the three-dimensional advection-dispersion equation for instantaneous point sources of EDB entering the flow systems in the two study areas. The model used an EDB half-life of 0.65 year (obtained from the mass-balance calculations), mean ground-water flow velocities of 0.6 to 1 meter per day, coefficients of longitudinal hydro-dynamic dispersion of 0.6 to 1.0 square meter per day, and coefficients of transverse hydrodynamic dispersion of 0.1 square meter per day. Peak concentrations of EDB in ground water calculated from the analytical model agreed closely with observed peak concentrations measured from 1983 through 1987.

  12. Interacting Physical and Biological Processes Affecting Nutrient Transport Through Human Dominated Landscapes

    NASA Astrophysics Data System (ADS)

    Finlay, J. C.

    2015-12-01

    Human activities increasingly dominate biogeochemical cycles of limiting nutrients on Earth. Urban and agricultural landscapes represent the largest sources of excess nutrients that drive water quality degradation. The physical structure of both urban and agricultural watersheds has been extensively modified, and these changes have large impacts on water and nutrient transport. Despite strong physical controls over nutrient transport in human dominated landscapes, biological processes play important roles in determining the fates of both nitrogen and phosphorus. This talk uses examples from research in urban and agricultural watersheds in the Midwestern USA to illustrate interactions of physical and biological controls over nutrient cycles that have shifted nitrogen (N) and phosphorus (P) sources and cycling in unexpected ways in response to management changes. In urban watersheds, efforts to improve water quality have been hindered by legacy sources of phosphorus added to storm water through transport to drainage systems by vegetation. Similarly, reductions in field erosion in agricultural watersheds have not led to major reductions in phosphorus transport, because of continued release of biological sources of P. Where management of phosphorus has been most effective in reducing eutrophication of lakes, decreases in N removal processes have led to long term increases in N concentration and transport. Together, these examples show important roles for biological processes affecting nutrient movement in highly modified landscapes. Consideration of the downstream physical and biological responses of management changes are thus critical toward identification of actions that will most effectively reduce excess nutrients watersheds and coastal zones.

  13. DayCent-Chem Simulations of Ecological and Biogeochemical Processes of Eight Mountain Ecosystems in the United States

    USGS Publications Warehouse

    Hartman, Melannie D.; Baron, Jill S.; Clow, David W.; Creed, Irena F.; Driscoll, Charles T.; Ewing, Holly A.; Haines, Bruce D.; Knoepp, Jennifer; Lajtha, Kate; Ojima, Dennis S.; Parton, William J.; Renfro, Jim; Robinson, R. Bruce; Van Miegroet, Helga; Weathers, Kathleen C.; Williams, Mark W.

    2009-01-01

    deposition as a result of dry and fog inputs. The uncertainties related to weathering reactions, deposition, soil cation exchange capacity, and groundwater contributions influenced how well the simulated acid neutralizing capacity (ANC) and pH estimates compared to observed values. Daily discharge was well represented by the model for most sites. The chapters of this report describe the parameterization for each site and summarize model results for ecosystem variables, stream discharge, and stream chemistry. This intersite comparison exercise provided insight about important and possibly not well understood processes.

  14. Estimating impacts of lichens and bryophytes on global biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Porada, Philipp; Weber, Bettina; Elbert, Wolfgang; Pöschl, Ulrich; Kleidon, Axel

    2014-02-01

    Lichens and bryophytes may significantly affect global biogeochemical cycles by fixation of nitrogen and biotic enhancement of surface weathering rates. Most of the studies suggesting these effects, however, are either conceptual or rely on upscaling of regional estimates to obtain global numbers. Here we use a different method, based on estimates of net carbon uptake, to quantify the impacts of lichens and bryophytes on biogeochemical cycles at the global scale. We focus on three processes, namely, nitrogen fixation, phosphorus uptake, and chemical weathering. Our estimates have the form of potential rates, which means that we quantify the amount of nitrogen and phosphorus needed by the organisms to build up biomass, also accounting for resorption and leaching of nutrients. Subsequently, we use potential phosphorus uptake on bare ground to estimate chemical weathering by the organisms, assuming that they release weathering agents to obtain phosphorus. The predicted requirement for nitrogen ranges from 3.5 to 34 Tgyr-1 and for phosphorus it ranges from 0.46 to 4.6 Tgyr-1. Estimates of chemical weathering are between 0.058 and 1.1 km3 yr-1 of rock. These values seem to have a realistic order of magnitude, and they support the notion that lichens and bryophytes have the potential to play an important role for biogeochemical cycles.

  15. Positive and negative affective processing exhibit dissociable functional hubs during the viewing of affective pictures.

    PubMed

    Zhang, Wenhai; Li, Hong; Pan, Xiaohong

    2015-02-01

    Recent resting-state functional magnetic resonance imaging (fMRI) studies using graph theory metrics have revealed that the functional network of the human brain possesses small-world characteristics and comprises several functional hub regions. However, it is unclear how the affective functional network is organized in the brain during the processing of affective information. In this study, the fMRI data were collected from 25 healthy college students as they viewed a total of 81 positive, neutral, and negative pictures. The results indicated that affective functional networks exhibit weaker small-worldness properties with higher local efficiency, implying that local connections increase during viewing affective pictures. Moreover, positive and negative emotional processing exhibit dissociable functional hubs, emerging mainly in task-positive regions. These functional hubs, which are the centers of information processing, have nodal betweenness centrality values that are at least 1.5 times larger than the average betweenness centrality of the network. Positive affect scores correlated with the betweenness values of the right orbital frontal cortex (OFC) and the right putamen in the positive emotional network; negative affect scores correlated with the betweenness values of the left OFC and the left amygdala in the negative emotional network. The local efficiencies in the left superior and inferior parietal lobe correlated with subsequent arousal ratings of positive and negative pictures, respectively. These observations provide important evidence for the organizational principles of the human brain functional connectome during the processing of affective information.

  16. Cretaceous-Palaeogene experiments in Biogeochemical Resilience

    NASA Astrophysics Data System (ADS)

    Penman, D. E.; Henehan, M. J.; Hull, P. M.; Planavsky, N.; Schmidt, D. N.; Rae, J. W. B.; Thomas, E.; Huber, B. T.

    2015-12-01

    Human activity is altering biogeochemical cycles in the ocean. While ultimately anthropogenic forcings may be brought under control, it is still unclear whether tipping points may exist beyond which human-induced changes to biogeochemical cycles become irreversible. We use the Late Cretaceous and the Cretaceous-Palaeogene (K-Pg) boundary interval as an informative case study. Over this interval, two carbon cycle perturbations (gradual flood basalt volcanism and abrupt bolide impact) occurred within a short time window, allowing us to investigate the resilience of biogeochemical cycles to different pressures applied to the same initial boundary conditions on very different time scales. We demonstrate that relatively gradual emission of CO2 from the Deccan large igneous province was efficiently mitigated within the limits of existing biogeochemical processes. However, the rapid extinction of pelagic calcifying organisms at the K-Pg boundary due to the Chicxulub bolide impact had more profound effects, and caused lasting (> 1 million years) changes to biogeochemical cycles. By combining sedimentological observations with boron isotope-based pH reconstructions over these events, we document two potentially useful partial analogues for best and worst case scenarios for anthropogenic global change. We suggest that if current ocean acidification results in the mass extinction of marine pelagic calcifiers, we may cause profound changes to the Earth system that will persist for 100,000s to millions of years.

  17. Spatio-temporal dynamics of biogeochemical processes and air-sea CO2 fluxes in the Western English Channel based on two years of FerryBox deployment

    NASA Astrophysics Data System (ADS)

    Marrec, P.; Cariou, T.; Latimier, M.; Macé, E.; Morin, P.; Vernet, M.; Bozec, Y.

    2014-12-01

    From January 2011 to January 2013, a FerryBox system was installed on a Voluntary Observing Ship (VOS), which crossed the Western English Channel (WEC) between Roscoff (France) and Plymouth (UK) up to 3 times a day. The FerryBox continuously measured sea surface temperature (SST), sea surface salinity (SSS), dissolved oxygen (DO), fluorescence and partial pressure of CO2 (from April 2012) along the ferry track. Sensors were calibrated based on 714 bimonthly surface samplings with precisions of 0.016 for SSS, 3.3 μM for DO, 0.40 μg L- 1 for Chlorophyll-a (Chl-a) (based on fluorescence measurements) and 5.2 μatm for pCO2. Over the 2 years of deployment (900 crossings), we reported 9% of data lost due to technical issues and quality checked data was obtained to allow investigation of the dynamics of biogeochemical processes related to air-sea CO2 fluxes in the WEC. Based on this unprecedented high-frequency dataset, the physical structure of the WEC was assessed using SST anomalies and the presence of a thermal front was observed around the latitude 49.5°N, which divided the WEC in two main provinces: the seasonally stratified northern WEC (nWEC) and the all-year well-mixed southern WEC (sWEC). These hydrographical properties strongly influenced the spatial and inter-annual distributions of phytoplankton blooms, which were mainly limited by nutrients and light availability in the nWEC and the sWEC, respectively. Air-sea CO2 fluxes were also highly related to hydrographical properties of the WEC between late April and early September 2012, with the sWEC a weak source of CO2 to the atmosphere of 0.9 mmol m- 2 d- 1, whereas the nWEC acted as a sink for atmospheric CO2 of 6.9 mmol m- 2 d- 1. The study of short time-scale dynamics of air-sea CO2 fluxes revealed that an intense and short (less than 10 days) summer bloom in the nWEC contributed to 29% of the CO2 sink during the productive period, highlighting the necessity for high frequency observations in coastal

  18. Biogeochemical processes at the fringe of a landfill leachate pollution plume: potential for dissolved organic carbon, Fe(II), Mn(II), NH 4, and CH 4 oxidation

    NASA Astrophysics Data System (ADS)

    van Breukelen, Boris M.; Griffioen, Jasper

    2004-09-01

    Various redox reactions may occur at the fringe of a landfill leachate plume, involving oxidation of dissolved organic carbon (DOC), CH 4, Fe(II), Mn(II), and NH 4 from leachate and reduction of O 2, NO 3 and SO 4 from pristine groundwater. Knowledge on the relevance of these processes is essential for the simulation and evaluation of natural attenuation (NA) of pollution plumes. The occurrence of such biogeochemical processes was investigated at the top fringe of a landfill leachate plume (Banisveld, the Netherlands). Hydrochemical depth profiles of the top fringe were captured via installation of a series of multi-level samplers at 18, 39 and 58 m downstream from the landfill. Ten-centimeter vertical resolution was necessary to study NA within a fringe as thin as 0.5 m. Bromide appeared an equally well-conservative tracer as chloride to calculate dilution of landfill leachate, and its ratio to chloride was high compared to other possible sources of salt in groundwater. The plume fringe rose steadily from a depth of around 5 m towards the surface with a few meters in the period 1998-2003. The plume uplift may be caused by enhanced exfiltration to a brook downstream from the landfill, due to increased precipitation over this period and an artificial lowering of the water level of the brook. This rise invoked cation exchange including proton buffering, and triggered degassing of methane. The hydrochemical depth profile was simulated in a 1D vertical reactive transport model using PHREEQC-2. Optimization using the nonlinear optimization program PEST brought forward that solid organic carbon and not clay minerals controlled retardation of cations. Cation exchange resulted in spatial separation of Fe(II), Mn(II) and NH 4 fronts from the fringe, and thereby prevented possible oxidation of these secondary redox species. Degradation of DOC may happen in the fringe zone. Re-dissolution of methane escaped from the plume and subsequent oxidation is an explanation for absence

  19. Relationship between auditory processing and affective prosody in schizophrenia.

    PubMed

    Jahshan, Carol; Wynn, Jonathan K; Green, Michael F

    2013-02-01

    Patients with schizophrenia have well-established deficits in their ability to identify emotion from facial expression and tone of voice. In the visual modality, there is strong evidence that basic processing deficits contribute to impaired facial affect recognition in schizophrenia. However, few studies have examined the auditory modality for mechanisms underlying affective prosody identification. In this study, we explored links between different stages of auditory processing, using event-related potentials (ERPs), and affective prosody detection in schizophrenia. Thirty-six schizophrenia patients and 18 healthy control subjects received tasks of affective prosody, facial emotion identification, and tone matching, as well as two auditory oddball paradigms, one passive for mismatch negativity (MMN) and one active for P300. Patients had significantly reduced MMN and P300 amplitudes, impaired auditory and visual emotion recognition, and poorer tone matching performance, relative to healthy controls. Correlations between ERP and behavioral measures within the patient group revealed significant associations between affective prosody recognition and both MMN and P300 amplitudes. These relationships were modality specific, as MMN and P300 did not correlate with facial emotion recognition. The two ERP waves accounted for 49% of the variance in affective prosody in a regression analysis. Our results support previous suggestions of a relationship between basic auditory processing abnormalities and affective prosody dysfunction in schizophrenia, and indicate that both relatively automatic pre-attentive processes (MMN) and later attention-dependent processes (P300) are involved with accurate auditory emotion identification. These findings provide support for bottom-up (e.g., perceptually based) cognitive remediation approaches.

  20. 129I/(127)I as a new environmental tracer or geochronometer for biogeochemical or hydrodynamic processes in the hydrosphere and geosphere: the central role of organo-iodine.

    PubMed

    Santschi, Peter H; Schwehr, Kathleen A

    2004-04-01

    Iodine is a biophilic element, with several short-lived isotopes (e.g. (131)I, t(1/2)=8 days), one long-lived isotope, (129)I (t(1/2)=15.6 million years) and one stable isotope, (127)I. The inventory of (129)I in surface environments has been overwhelmed by anthropogenic releases over the past 50 years. Iodine and its isotopes are important for a number of reasons: (1) The largest fraction of the short-term and long-term dose from accidental releases and fallout from atomic bomb tests was from iodine isotopes. (2) (129)I is one of the two long-lived nuclides with highest mobility in stored radioactive waste. (3) (129)I could provide the scientific community with a new geochemical tracer and new geochronological applications in environmental science. (4) A better assessment of iodine deficiency disorders, mineralization in exploration geochemistry, and the transfer of volatile organic greenhouse-active and ozone-destroying iodine species from the oceans to the atmosphere is needed. One of the most promising future applications for the (129)I/(127)I ratio is not only as a new geochronometer, but also as a new source tracer for terrestrial organic matter with ages of 50 years or less. This is especially attractive, since radiocarbon can be, at times, an ambiguous chronometer for the 50-year time-scale, whereas (129)I concentrations during this time are overwhelming previous levels by orders of magnitude. Iodine is to a significant extent involved in the cycle of organic matter in all surface environments. Its biophilic nature is demonstrated by a relative enrichment of iodine in seaweed and dissolved macromolecular organic matter. Because of the close coupling of iodine and organic carbon cycles, our understanding of the underlying molecular mechanisms of the processes regulating iodination reactions in aquatic systems is still limited. The binding of iodine by organic matter has the potential to modify the transport, bioavailability and transfer of iodine isotopes to

  1. Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon

    USGS Publications Warehouse

    Kuwabara, James S.; Topping, Brent R.; Carter, James L.; Carlson, Rick A; Parchaso, Francis; Fend, Steven V.; Stauffer-Olsen, Natalie; Manning, Andrew J.; Land, Jennie M.

    2016-09-30

    Executive SummaryMultiple sampling trips during calendar years 2013 through 2015 were coordinated to provide measurements of interdependent benthic processes that potentially affect contaminant transport in Upper Klamath Lake (UKL), Oregon. The measurements were motivated by recognition that such internal processes (for example, solute benthic flux, bioturbation and solute efflux by benthic invertebrates, and physical groundwater-surface water interactions) were not integrated into existing management models for UKL. Up until 2013, all of the benthic-flux studies generally had been limited spatially to a number of sites in the northern part of UKL and limited temporally to 2–3 samplings per year. All of the benthic invertebrate studies also had been limited to the northern part of the lake; however, intensive temporal (weekly) studies had previously been completed independent of benthic-flux studies. Therefore, knowledge of both the spatial and temporal variability in benthic flux and benthic invertebrate distributions for the entire lake was lacking. To address these limitations, we completed a lakewide spatial study during 2013 and a coordinated temporal study with weekly sampling of benthic flux and benthic invertebrates during 2014. Field design of the spatially focused study in 2013 involved 21 sites sampled three times as the summer cyanobacterial bloom developed (that is, May 23, June 13, and July 3, 2013). Results of the 27-week, temporally focused study of one site in 2014 were summarized and partitioned into three periods (referred to herein as pre-bloom, bloom and post-bloom periods), each period involving 9 weeks of profiler deployments, water column and benthic sampling. Partitioning of the pre-bloom, bloom, and post-bloom periods were based on water-column chlorophyll concentrations and involved the following date intervals, respectively: April 15 through June 10, June 17 through August 13, and August 20 through October 16, 2014. To examine

  2. Biogeochemical evolution of a landfill leachate plume, Norman, Oklahoma

    USGS Publications Warehouse

    Cozzarelli, Isabelle M.; Bohlke, Johnkarl F.; Masoner, Jason R.; Breit, George N.; Lorah, Michelle M.; Tuttle, Michele L.W.; Jaeschke, Jeanne B.

    2011-01-01

    Leachate from municipal landfills can create groundwater contaminant plumes that may last for decades to centuries. The fate of reactive contaminants in leachate-affected aquifers depends on the sustainability of biogeochemical processes affecting contaminant transport. Temporal variations in the configuration of redox zones downgradient from the Norman Landfill were studied for more than a decade. The leachate plume contained elevated concentrations of nonvolatile dissolved organic carbon (NVDOC) (up to 300 mg/L), methane (16 mg/L), ammonium (650 mg/L as N), iron (23 mg/L), chloride (1030 mg/L), and bicarbonate (4270 mg/L). Chemical and isotopic investigations along a 2D plume transect revealed consumption of solid and aqueous electron acceptors in the aquifer, depleting the natural attenuation capacity. Despite the relative recalcitrance of NVDOC to biodegradation, the center of the plume was depleted in sulfate, which reduces the long-term oxidation capacity of the leachate-affected aquifer. Ammonium and methane were attenuated in the aquifer relative to chloride by different processes: ammonium transport was retarded mainly by physical interaction with aquifer solids, whereas the methane plume was truncated largely by oxidation. Studies near plume boundaries revealed temporal variability in constituent concentrations related in part to hydrologic changes at various time scales. The upper boundary of the plume was a particularly active location where redox reactions responded to recharge events and seasonal water-table fluctuations. Accurately describing the biogeochemical processes that affect the transport of contaminants in this landfill-leachate-affected aquifer required understanding the aquifer's geologic and hydrodynamic framework.

  3. Developing Worksheet Based on Science Process Skills: Factors Affecting Solubility

    ERIC Educational Resources Information Center

    Karsli, Fethiye; Sahin, Cigdem

    2009-01-01

    The purpose of this study is to develop a worksheet about the factors affecting solubility, which could be useful for the prospective science teachers (PST) to remind and regain their science process skills (SPS). The pilot study of the WS was carried out with 32 first grade PST during the 2007-2008 academic year in the education department at…

  4. Ghosts of vegetation past: Biogeochemical legacy effects in changing drylands

    NASA Astrophysics Data System (ADS)

    Throop, H. L.

    2012-12-01

    Woody encroachment, the proliferation of woody plants into grasslands and savannas, is a major land cover change that has affected drylands worldwide over the past century. This vegetation change has fundamentally altered biogeochemical processes in drylands, with evidence that woody plant cover accounts for a significant, albeit highly uncertain, fraction of the Northern Hemisphere carbon (C) sink. Elevated under-canopy soil organic carbon (SOC) pools have been widely reported following woody encroachment. Although generalizing rates of SOC accumulation among encroached drylands remains challenging, integrating information on factors such as land management, soil properties, and spatio-temporal patterns of encroachment is improving estimates of these patterns. Recent work suggests that changes in SOC may occur fairly rapidly following shrub encroachment into southwestern drylands, but that these inputs are primarily in relatively labile, light fraction SOC. Isotopic analyses indicate that woody plant inputs are incorporated into heavy fraction C pools as well, suggesting that these pools may reflect relatively dynamic inputs and outputs. However, understanding the biogeochemical consequences of woody encroachment are complicated by land management practices. In the western US, landscapes are often a mosaic of sites undergoing woody encroachment and sites recovering from 'brush management' practices imposed to reduce woody plant cover. In contrast to the rapid changes in SOC following encroachment, biogeochemical legacies of removed shrubs may persist for decades following brush management. These legacy effects may be a function of slow degradation of stable SOC compounds. In addition, lag effects on surface litter decomposition may remain for many years following brush management, the result of persistent high grass density in the vicinity of "ghosts" shrubs. Results from the CENTURY model suggest that SOC losses would continue for ca. 105 years after shrub

  5. Investigating facial affect processing in psychosis: a study using the Comprehensive Affective Testing System.

    PubMed

    Rossell, Susan L; Van Rheenen, Tamsyn E; Joshua, Nicole R; O'Regan, Alison; Gogos, Andrea

    2014-08-01

    Facial affect processing (FAP) deficits in schizophrenia (SZ) and bipolar disorder (BD) have been widely reported; although effect sizes vary across studies, and there are limited direct comparisons of the two groups. Further, there is debate as to the influence of both psychotic and mood symptoms on FAP. This study aimed to address these limitations by recruiting groups of psychosis patients with either a diagnosis of SZ or BD and comparing them to healthy controls (HC) on a well validated battery of four FAP subtests: affect discrimination, name affect, select affect and match affect. Overall, both groups performed more poorly than controls in terms of accuracy. In SZ, this was largely driven by impairments on three of the four subtests. The BD patients showed impaired performance specifically on the match affect subtest, a task that had a high cognitive load. FAP performance in the psychosis patients was correlated with severity of positive symptoms and mania. This study confirmed that FAP deficits are a consistent finding in SZ that occur independent of task specific methodology; whilst FAP deficits in BD are more subtle. Further work in this group is needed to replicate these results.

  6. Electrophysiological differences in the processing of affect misattribution.

    PubMed

    Hashimoto, Yohei; Minami, Tetsuto; Nakauchi, Shigeki

    2012-01-01

    The affect misattribution procedure (AMP) was proposed as a technique to measure an implicit attitude to a prime image [1]. In the AMP, neutral symbols (e.g., a Chinese pictograph, called the target) are presented, following an emotional stimulus (known as the prime). Participants often misattribute the positive or negative affect of the priming images to the targets in spite of receiving an instruction to ignore the primes. The AMP effect has been investigated using behavioral measures; however, it is difficult to identify when the AMP effect occurs in emotional processing-whether the effect may occur in the earlier attention allocation stage or in the later evaluation stage. In this study, we examined the neural correlates of affect misattribution, using event-related potential (ERP) dividing the participants into two groups based on their tendency toward affect misattribution. The ERP results showed that the amplitude of P2 was larger for the prime at the parietal location in participants showing a low tendency to misattribution than for those showing a high tendency, while the effect of judging neutral targets amiss according to the primes was reflected in the late processing of targets (LPP). In addition, the topographic pattern analysis revealed that EPN-like component to targets was correlated with the difference of AMP tendency as well as P2 to primes and LPP to targets. Taken together, the mechanism of the affective misattribution was closely related to the attention allocation processing. Our findings provide neural evidence that evaluations of neutral targets are misattributed to emotional primes.

  7. Spelling-to-sound correspondences affect acronym recognition processes.

    PubMed

    Playfoot, David; Izura, Cristina

    2015-01-01

    A large body of research has examined the factors that affect the speed with which words are recognized in lexical decision tasks. Nothing has yet been reported concerning the important factors in differentiating acronyms (e.g., BBC, HIV, NASA) from nonwords. It appears that this task poses little problem for skilled readers, in spite of the fact that acronyms have uncommon, even illegal, spellings in English. We used regression techniques to examine the role of a number of lexical and nonlexical variables known to be important in word processing in relation to lexical decision for acronym targets. Findings indicated that acronym recognition is affected by age of acquisition and imageability. In a departure from findings in word recognition, acronym recognition was not affected by frequency. Lexical decision responses for acronyms were also affected by the relationship between spelling and sound-a pattern not usually observed in word recognition. We argue that the complexity of acronym recognition means that the process draws phonological information in addition to semantics. PMID:25337636

  8. Processes affecting the oceanic distributions of dissolved calcium and alkalinity

    SciTech Connect

    Shiller, A.M.; Gieskes, J.M.

    1980-05-20

    Recent studies of the CO/sub 2/ system have suggested that chemical processes in addition to the dissolution and precipitation of calcium carbonate affect the oceanic calcium and alkalinity distributions. Calcium and alkalinity data from the North Pacific have been examined both by using the simple physical-chemical model of previous workers and by a study involving the broader oceanographic context of these data. The simple model is shown to be an inadequate basis for these studies. Although a proton flux associated with organic decomposition may affect the alkalinity, previously reported deviations of calcium-alkalinity correlations from expected trends appear to be related to boundary processes that have been neglected rather than to this proton flux. The distribution of calcium in the surface waters of the Pacific Ocean is examined.

  9. [Effects of global climate change on the ecological characteristics and biogeochemical significance of marine viruses--A review].

    PubMed

    Yang, Yunlan; Cai, Lanlan; Zhang, Rui

    2015-09-01

    As the most abundance biological agents in the oceans, viruses can influence the physiological and ecological characteristics of host cells through viral infections and lysis, and affect the nutrient and energy cycles of the marine food chain. Thus, they are the major players in the ocean biogeochemical processes. The problems caused by global climate changes, such as sea-surface warming, acidification, nutrients availability, and deoxygenation, have the potential effects on marine viruses and subsequently their ecological and biogeochemical function in the ocean. Here, we reviewed the potential impacts of global climate change on the ecological characteristics (e. g. abundance, distribution, life cycle and the host-virus interactions) and biogeochemical significance (e. g. carbon cycling) of marine viruses. We proposed that marine viruses should not be ignored in the global climate change study. PMID:26762022

  10. [Effects of global climate change on the ecological characteristics and biogeochemical significance of marine viruses--A review].

    PubMed

    Yang, Yunlan; Cai, Lanlan; Zhang, Rui

    2015-09-01

    As the most abundance biological agents in the oceans, viruses can influence the physiological and ecological characteristics of host cells through viral infections and lysis, and affect the nutrient and energy cycles of the marine food chain. Thus, they are the major players in the ocean biogeochemical processes. The problems caused by global climate changes, such as sea-surface warming, acidification, nutrients availability, and deoxygenation, have the potential effects on marine viruses and subsequently their ecological and biogeochemical function in the ocean. Here, we reviewed the potential impacts of global climate change on the ecological characteristics (e. g. abundance, distribution, life cycle and the host-virus interactions) and biogeochemical significance (e. g. carbon cycling) of marine viruses. We proposed that marine viruses should not be ignored in the global climate change study.

  11. Biogeochemical evolution of sulfide ore mine tailings profiles under semi-arid climate

    NASA Astrophysics Data System (ADS)

    Chorover, J.

    2014-12-01

    Mining represents a principal form of earth surface disturbance in the anthropocene. Weathering reactions that ensue following tailings deposition are strongly affected by climatic forcing and tailings composition, and these also affect the weathering-induced transformations of the associated mineral assemblages and metal(loid) contaminants. The presence or absence of plants and associated microbiota can have a profound influence on these weathering trajectories. We employed field, laboratory and modeling approaches to resolve the impact of (bio)geochemical weathering reactions on the transformation of mine tailings parent materials into soil over the time following mining cessation. Using controlled experiments, we have evaluated the impacts of plants and associated rhizosphere microbiota on these reactions, hydrologic fluxes, and the molecular speciation of mining derived contaminants. Plant establishment is shown to alter site ecohydrology and biogeochemical weathering processes leading to distinctly different weathering products and patterns.

  12. Hydro-biogeochemical Controls on Geophysical Signatures (Invited)

    NASA Astrophysics Data System (ADS)

    Atekwana, E. A.

    2013-12-01

    Geophysical techniques such as seismic, magnetic and electrical techniques have historically played a major role in oil exploration. Their main use has been for delineation basin geometry, structures and hydrocarbon traps and for understanding the subsurface stratigraphy. Their use for investigating microbial processes has only recently been recognized over the last decade resulting in the development of biogeophysics as a frontier research area which bridges the fields of environmental microbiology, biogeochemistry, geomicrobiology. Recent biogeophysical studies have demonstrated the potential of geophysical technologies to (1) probe the presence of microbial cells and biofilms in subsurface geologic media, (2) investigate the interactions between microorganisms and subsurface geologic media, (3) assess biogeochemical transformations, biomineralization, and biogeochemical reaction rates, and (4) investigate the alteration of physical properties of subsurface geologic media induced by microorganisms. The unique properties of geophysical datasets (e.g. non-invasive data acquisition, spatially continuous properties retrieved) make them attractive for probing microbial processes affecting fate and transport of contaminants. This presentation will provide an updated understanding of major controls on geophysical signatures by highlighting some of the important advancements in biogeophysical studies at hydrocarbon contaminated environments. Important challenges that provide an opportunity for further research in this new field will also be examined.

  13. Salt Marsh Sediment Biogeochemical Response to the BP Blowout.

    PubMed

    Mills, Calista G; McNeal, Karen S

    2014-09-01

    The impact of the blowout on salt marshes was investigated by observing the biogeochemistry in salt marsh sediments along the Gulf Coast. High sulfide levels due to hydrocarbon loading, increased microbial activity, and microbial community shifts can lead to plant browning and mortality. Sediment biogeochemical processes that degrade enriched carbon pools through sulfate reduction are primarily responsible for the biodegradation of spilled hydrocarbons. An assessment of the impact of contamination on salt marshes at Skiff Island, LA, and Cat Island, Marsh Point, and Saltpan Island, MS, was achieved through sediment electrode profiling, microbial community profiling, and quantification of hydrocarbon contamination, which captured the spatial sedimentary biogeochemical response that affects salt marsh productivity. At western locations (Skiff and Cat Islands), total petroleum hydrocarbons (TPHs) ranged from 2183 to 2996 mg kg, which was more than double the TPH concentration observed at eastern locales. At eastern study locations (e.g., Marsh Point), sedimentary pore-water HS concentrations were higher (maximum value = 231 mg L) and detected further up in the sediment column than at western locales (e.g., Skiff Island). Similarly, anaerobic and aerobic microbial activity, as measured by C substrate utilization profiles and well-color development, was as high or higher at eastern locations as compared with western locations. These results indicate that other factors besides location or degree of contamination, perhaps sedimentary dynamics and physical processes specific to each marsh, should be considered when determining salt marsh response to hydrocarbon contamination.

  14. Neural Correlates of Affect Processing and Aggression in Methamphetamine Dependence

    PubMed Central

    Payer, Doris E.; Lieberman, Matthew D.; London, Edythe D.

    2012-01-01

    Context Methamphetamine abuse is associated with high rates of aggression, but few studies have addressed the contributing neurobiological factors. Objective To quantify aggression, investigate function of the amygdala and prefrontal cortex, and assess relationships between brain function and behavior in methamphetamine-dependent individuals. Design In a case-control study, aggression and brain activation were compared between methamphetamine-dependent and control participants. Setting Participants were recruited from the general community to an academic research center. Participants Thirty-nine methamphetamine-dependent volunteers (16 women) who were abstinent for 7 to 10 days and 37 drug-free control volunteers (18 women) participated in the study; subsets completed self-report and behavioral measures. Functional magnetic resonance imaging (fMRI) was performed on 25 methamphetamine-dependent and 23 control participants. Main outcome measures We measured self-reported and perpetrated aggression, and self-reported alexithymia. Brain activation was assessed using fMRI during visual processing of facial affect (affect matching), and symbolic processing (affect labeling), the latter representing an incidental form of emotion regulation. Results Methamphetamine-dependent participants self-reported more aggression and alexithymia than control participants and escalated perpetrated aggression more following provocation. Alexithymia scores correlated with measures of aggression. During affect matching, fMRI showed no differences between groups in amygdala activation, but found lower activation in methamphetamine-dependent than control participants in bilateral ventral inferior frontal gyrus. During affect labeling, participants recruited dorsal inferior frontal gyrus and exhibited decreased amygdala activity, consistent with successful emotion regulation; there was no group difference in this effect. The magnitude of decrease in amygdala activity during affect labeling

  15. Application of ultrasound processed images in space: assessing diffuse affectations

    NASA Astrophysics Data System (ADS)

    Pérez-Poch, A.; Bru, C.; Nicolau, C.

    The purpose of this study was to evaluate diffuse affectations in the liver using texture image processing techniques. Ultrasound diagnose equipments are the election of choice to be used in space environments as they are free from hazardous effects on health. However, due to the need for highly trained radiologists to assess the images, this imaging method is mainly applied on focal lesions rather than on non-focal ones. We have conducted a clinical study on 72 patients with different degrees of chronic hepatopaties and a group of control of 18 individuals. All subjects' clinical reports and results of biopsies were compared to the degree of affectation calculated by our computer system , thus validating the method. Full statistical results are given in the present paper showing a good correlation (r=0.61) between pathologist's report and analysis of the heterogenicity of the processed images from the liver. This computer system to analyze diffuse affectations may be used in-situ or via telemedicine to the ground.

  16. Processing of affective speech prosody is impaired in Asperger syndrome.

    PubMed

    Korpilahti, Pirjo; Jansson-Verkasalo, Eira; Mattila, Marja-Leena; Kuusikko, Sanna; Suominen, Kalervo; Rytky, Seppo; Pauls, David L; Moilanen, Irma

    2007-09-01

    Many people with the diagnosis of Asperger syndrome (AS) show poorly developed skills in understanding emotional messages. The present study addressed discrimination of speech prosody in children with AS at neurophysiological level. Detection of affective prosody was investigated in one-word utterances as indexed by the N1 and the mismatch negativity (MMN) of auditory event-related potentials (ERPs). Data from fourteen boys with AS were compared with those for thirteen typically developed boys. These results suggest atypical neural responses to affective prosody in children with AS and their fathers, especially over the RH, and that this impairment can already be seen at low-level information processes. Our results provide evidence for familial patterns of abnormal auditory brain reactions to prosodic features of speech.

  17. Biogeochemical processes in an urban, restored wetland of San Francisco Bay, California, 2007-2009; methods and data for plant, sediment and water parameters

    USGS Publications Warehouse

    Windham-Myers, Lisamarie; Marvin-DiPasquale, Mark C.; Agee, Jennifer L.; Kieu, Le H.; Kakouros, Evangelos; Erikson, Li H.; Ward, Kristen

    2010-01-01

    The restoration of 18 acres of historic tidal marsh at Crissy Field has had great success in terms of public outreach and visibility, but less success in terms of revegetated marsh sustainability. Native cordgrass (Spartina foliosa) has experienced dieback and has failed to recolonize following extended flooding events during unintended periodic closures of its inlet channel, which inhibits daily tidal flushing. We examined the biogeochemical impacts of these impoundment events on plant physiology and on sulfur and mercury chemistry to help the National Park Service land managers determine the relative influence of these inlet closures on marsh function. In this comparative study, we examined key pools of sulfur, mercury, and carbon compounds both during and between closure events. Further, we estimated the net hydrodynamic flux of methylmercury and total mercury to and from the marsh during a 24-hour diurnal cycle. This report documents the methods used and the data generated during the study.

  18. Agricultural management affects evolutionary processes in a migratory songbird

    USGS Publications Warehouse

    Perlut, N.G.; Freeman-Gallant, C. R.; Strong, A.M.; Donovan, T.M.; Kilpatrick, C.W.; Zalik, N.J.

    2008-01-01

    Hay harvests have detrimental ecological effects on breeding songbirds, as harvesting results in nest failure. Importantly, whether harvesting also affects evolutionary processes is not known. We explored how hay harvest affected social and genetic mating patterns, and thus, the overall opportunity for sexual selection and evolutionary processes for a ground-nesting songbird, the Savannah sparrow (Passerculus sandwichensis). On an unharvested field, 55% of females were in polygynous associations, and social polygyny was associated with greater rates of extra-pair paternity (EPP). In this treatment, synchrony explained variation in EPP rates, as broods by more synchronous females had more EPP than broods by asynchronous females. In contrast, on a harvested field, simultaneous nest failure caused by haying dramatically decreased the overall incidence of EPP by increasing the occurrence of social monogamy and, apparently, the ability of polygynous males to maintain paternity in their own nests. Despite increased social and genetic monogamy, these haying-mediated changes in mating systems resulted in greater than twofold increase in the opportunity for sexual selection. This effect arose, in part, from a 30% increase in the variance associated with within-pair fertilization success, relative to the unharvested field. This effect was caused by a notable increase (+110%) in variance associated with the quality of social mates following simultaneous nest failure. Because up to 40% of regional habitat is harvested by early June, these data may demonstrate a strong population-level effect on mating systems, sexual selection, and consequently, evolutionary processes. ?? 2008 The Authors.

  19. Processes affecting the remediation of chromium-contaminated sites.

    PubMed Central

    Palmer, C D; Wittbrodt, P R

    1991-01-01

    The remediation of chromium-contaminated sites requires knowledge of the processes that control the migration and transformation of chromium. Advection, dispersion, and diffusion are physical processes affecting the rate at which contaminants can migrate in the subsurface. Heterogeneity is an important factor that affects the contribution of each of these mechanisms to the migration of chromium-laden waters. Redox reactions, chemical speciation, adsorption/desorption phenomena, and precipitation/dissolution reactions control the transformation and mobility of chromium. The reduction of CrVI to CrIII can occur in the presence of ferrous iron in solution or in mineral phases, reduced sulfur compounds, or soil organic matter. At neutral to alkaline pH, the CrIII precipitates as amorphous hydroxides or forms complexes with organic matter. CrIII is oxidized by manganese dioxide, a common mineral found in many soils. Solid-phase precipitates of hexavalent chromium such as barium chromate can serve either as sources or sinks for CrVI. Adsorption of CrVI in soils increases with decreasing chromium concentration, making it more difficult to remove the chromium as the concentration decreases during pump-and-treat remediation. Knowledge of these chemical and physical processes is important in developing and selecting effective, cost-efficient remediation designs for chromium-contaminated sites. PMID:1935849

  20. Biogeochemical Cycles in Degraded Lands

    NASA Technical Reports Server (NTRS)

    Davidson, Eric A.; Vieira, Ima Celia G.; ReisdeCarvalho, Claudio Jose; DeanedeAbreuSa, Tatiana; deSouzaMoutinho, Paulo R.; Figueiredo, Ricardo O.; Stone, Thomas A.

    2004-01-01

    The objectives of this project were to define and describe the types of landscapes that fall under the broad category of "degraded lands" and to study biogeochemical cycles across this range of degradation found in secondary forests. We define degraded land as that which has lost part of its capacity of renovation of a productive ecosystem, either in the context of agroecosystems or as native communities of vegetation. This definition of degradation permits evaluation of biogeochemical constraints to future land uses.

  1. Biogeochemical Cycles in Degraded Lands

    NASA Technical Reports Server (NTRS)

    Davidson, Eric A.; Vieira, Ima Celia G.; ReisdeCarvalho, Claudio Jose; DeaneDeAbreuSa, Tatiana; deSpozaMoutinho, Paulo R.; Figueiredo, Ricardo O.; Stone, Thomas A.

    2003-01-01

    The objectives of this project were to define and describe the types of landscapes that fall under the broad category of "degraded lands" and to study biogeochemical cycles across this range of degradation found in secondary forests. We define degraded land as that which has lost part of its capacity of renovation of a productive ecosystem, either in the context of agroecosystems or as native communities of vegetation. This definition of degradation permits evaluation of biogeochemical constraints to future land uses.

  2. Effects of processing style on responsiveness to affective stimuli and processing fluency.

    PubMed

    Dijkstra, Koen A; van der Pligt, Joop; van Kleef, Gerben A

    2014-01-01

    In the present study, we provide direct evidence for effects of global versus local processing on responsiveness to and reliance on affective information in judgement and decision-making. Results of Experiments 1 and 2 showed an increased responsiveness to affective stimuli among participants in a global processing mode. Experiment 3 showed similar effects for processing fluency; participants adopting a global processing style showed an increased reliance on fluency. Experiment 4 replicated our findings in a more mundane judgement task in which participants judged apartments. We discuss our findings in relation to the distinction between intuitive versus deliberative modes of thinking.

  3. Development of brain mechanisms for processing affective touch

    PubMed Central

    Björnsdotter, Malin; Gordon, Ilanit; Pelphrey, Kevin A.; Olausson, Håkan; Kaiser, Martha D.

    2014-01-01

    Affective tactile stimulation plays a key role in the maturation of neural circuits, but the development of brain mechanisms processing touch is poorly understood. We therefore used functional magnetic resonance imaging (fMRI) to study brain responses to soft brush stroking of both glabrous (palm) and hairy (forearm) skin in healthy children (5–13 years), adolescents (14–17 years), and adults (25–35 years). Adult-defined regions-of-interests in the primary somatosensory cortex (SI), secondary somatosensory cortex (SII), insular cortex and right posterior superior temporal sulcus (pSTS) were significantly and similarly activated in all age groups. Whole-brain analyses revealed that responses in the ipsilateral SII were positively correlated with age in both genders, and that responses in bilateral regions near the pSTS correlated significantly and strongly with age in females but not in males. These results suggest that brain mechanisms associated with both sensory-discriminative and affective-motivational aspects of touch are largely established in school-aged children, and that there is a general continuing maturation of SII and a female-specific increase in pSTS sensitivity with age. Our work establishes a groundwork for future comparative studies of tactile processing in developmental disorders characterized by disrupted social perception such as autism. PMID:24550800

  4. Processes affecting the distribution and speciation of selenium in seawater

    SciTech Connect

    Cutter, G.A.

    1982-01-01

    The analyses of dissolved selenium species in the Pacific Ocean and anoxic waters of the Saanich Inlet, selenium in fluxing particles, and the regeneration of selenium from biogenic matter has been undertaken in order to evaluate the processes affecting selenium in the ocean. Analyses of oceanic surface waters show selenite to be severely depleted, and the degree of selenate depletion, a function of the oceanic regime (i.e. most depleted in oligotrophic regions). Both species are enriched in deeper waters with an approximately 60:40 ratio of Se +6 to +4. A major species in surface waters and the upper thermocline is organic selenide. A secondary maximum of organic selenide is seen in the suboxic oxygen minimum of the eastern tropical Pacific, while selenite shows a negative anomaly. The regeneration of selenium from biogenic matter shows a multistep behavior, with organic selenide being released rapidly and primarily, selenite and selenate being produced by the slow oxidation of this fraction. Selenium in the ocean is affected by several processes. First organisms preferentially take-up selenite over selenate. This incorporation of selenium into biological material involves reduction to selenide. As selenium is regenerated from biogenic matter, first organic selenide is released, which in turn oxidizes to selenite, which then oxidizes very slowly to selenate. Finally, selenium does appear to undergo redox reactions in anoxic systems, but the products of the reactions remain unidentified.

  5. Affective and executive network processing associated with persuasive antidrug messages.

    PubMed

    Ramsay, Ian S; Yzer, Marco C; Luciana, Monica; Vohs, Kathleen D; MacDonald, Angus W

    2013-07-01

    Previous research has highlighted brain regions associated with socioemotional processes in persuasive message encoding, whereas cognitive models of persuasion suggest that executive brain areas may also be important. The current study aimed to identify lateral prefrontal brain areas associated with persuasive message viewing and understand how activity in these executive regions might interact with activity in the amygdala and medial pFC. Seventy adolescents were scanned using fMRI while they watched 10 strongly convincing antidrug public service announcements (PSAs), 10 weakly convincing antidrug PSAs, and 10 advertisements (ads) unrelated to drugs. Antidrug PSAs compared with nondrug ads more strongly elicited arousal-related activity in the amygdala and medial pFC. Within antidrug PSAs, those that were prerated as strongly persuasive versus weakly persuasive showed significant differences in arousal-related activity in executive processing areas of the lateral pFC. In support of the notion that persuasiveness involves both affective and executive processes, functional connectivity analyses showed greater coactivation between the lateral pFC and amygdala during PSAs known to be strongly (vs. weakly) convincing. These findings demonstrate that persuasive messages elicit activation in brain regions responsible for both emotional arousal and executive control and represent a crucial step toward a better understanding of the neural processes responsible for persuasion and subsequent behavior change.

  6. Major hydrogeochemical processes in an acid mine drainage affected estuary.

    PubMed

    Asta, Maria P; Calleja, Maria Ll; Pérez-López, Rafael; Auqué, Luis F

    2015-02-15

    This study provides geochemical data with the aim of identifying and quantifying the main processes occurring in an Acid Mine Drainage (AMD) affected estuary. With that purpose, water samples of the Huelva estuary were collected during a tidal half-cycle and ion-ion plots and geochemical modeling were performed to obtain a general conceptual model. Modeling results indicated that the main processes responsible for the hydrochemical evolution of the waters are: (i) the mixing of acid fluvial water with alkaline ocean water; (ii) precipitation of Fe oxyhydroxysulfates (schwertmannite) and hydroxides (ferrihydrite); (iii) precipitation of Al hydroxysulfates (jurbanite) and hydroxides (amorphous Al(OH)3); (iv) dissolution of calcite; and (v) dissolution of gypsum. All these processes, thermodynamically feasible in the light of their calculated saturation states, were quantified by mass-balance calculations and validated by reaction-path calculations. In addition, sorption processes were deduced by the non-conservative behavior of some elements (e.g., Cu and Zn). PMID:25530015

  7. Biogeochemical C and N cycles in urban soils.

    PubMed

    Lorenz, Klaus; Lal, Rattan

    2009-01-01

    The percentage of urban population is projected to increase drastically. In 2030, 50.7 to 86.7% of the total population in Africa and Northern America may live in urban areas, respectively. The effects of the attendant increases in urban land uses on biogeochemical C and N cycles are, however, largely unknown. Biogeochemical cycles in urban ecosystems are altered directly and indirectly by human activities. Direct effects include changes in the biological, chemical and physical soil properties and processes in urban soils. Indirect effects of urban environments on biogeochemical cycles may be attributed to the introductions of exotic plant and animal species and atmospheric deposition of pollutants. Urbanization may also affect the regional and global atmospheric climate by the urban heat island and pollution island effect. On the other hand, urban soils have the potential to store large amounts of soil organic carbon (SOC) and, thus, contribute to mitigating increases in atmospheric CO(2) concentrations. However, the amount of SOC stored in urban soils is highly variable in space and time, and depends among others on soil parent material and land use. The SOC pool in 0.3-m depth may range between 16 and 232 Mg ha(-1), and between 15 and 285 Mg ha(-1) in 1-m depth. Thus, depending on the soil replaced or disturbed, urban soils may have higher or lower SOC pools, but very little is known. This review provides an overview of the biogeochemical cycling of C and N in urban soils, with a focus on the effects of urban land use and management on soil organic matter (SOM). In view of the increase in atmospheric CO(2) and reactive N concentrations as a result of urbanization, urban land use planning must also include strategies to sequester C in soil, and also enhance the N sink in urban soils and vegetation. This will strengthen soil ecological functions such as retention of nutrients, hazardous compounds and water, and also improve urban ecosystem services by promoting

  8. Determination of processes affecting groundwater quality in the coastal aquifer beneath Puri city, India: a multivariate statistical approach.

    PubMed

    Mohapatra, P K; Vijay, R; Pujari, P R; Sundaray, S K; Mohanty, B P

    2011-01-01

    Variability of groundwater quality parameters is linked to various processes such as weathering, organic matter degradation, aerobic respiration, iron reduction, mineral dissolution and precipitation, cation exchange and mixing of salt water with fresh water. Multivariate statistical analyses such as principal component analysis (PCA) and hierarchical cluster analysis (HCA) were applied to the standardized data set of eleven groundwater quality parameters (i.e. pH, Ca2+, Mg2+, Na+, K+, Fe3+, alkalinity, NO3-, Cl-, SO4(2-), TDS) collected during the post-monsoon and the summer seasons in order to elicit hydrologic and biogeochemical processes affecting water quality in the unconfined aquifer beneath Puri city in eastern India. The application of PCA resulted in four factors explaining 73% variance in post-monsoon and 81% variance in summer. The HCA using Ward's method and squared Euclidean distance measure classified the parameters into four clusters based on their similarities. PCA and HCA allowed interpretation of processes. During both post-monsoon and summer seasons, anthropogenic pollution and organic matter degradation/Fe(III) reduction were found dominant due to contribution from on-site sanitation in septic tanks and soak pits in the city. Cation exchange and mineral precipitation were possible causes for increase in Na+ and decrease in Ca2+ concentration in summer. Fresh water recharge during monsoon and Sea water intrusion in summer are attributed as significant hydrologic processes to variations of the groundwater quality at the study site.

  9. A Generic Biogeochemical Module for Earth System Models: Next Generation BioGeoChemical Module (NGBGC), Version 1.0

    SciTech Connect

    Fang, Yilin; Huang, Maoyi; Liu, Chongxuan; Li, Hongyi; Leung, Lai-Yung R.

    2013-11-13

    Physical and biogeochemical processes regulate soil carbon dynamics and CO2 flux to and from atmosphere, influencing global climate changes. Integration of these processes into earth system models (e.g., community land models (CLM)), however, currently faces three major challenges: 1) extensive efforts are required to modify modeling structures and to rewrite computer programs to incorporate new or updated processes as new knowledge is being generated, 2) computational cost is prohibitively expensive to simulate biogeochemical processes in land models due to large variations in the rates of biogeochemical processes, and 3) various mathematical representations of biogeochemical processes exist to incorporate different aspects of fundamental mechanisms, but systematic evaluation of the different mathematical representations is difficult, if not possible. To address these challenges, we propose a new computational framework to easily incorporate physical and biogeochemical processes into land models. The new framework consists of a new biogeochemical module with a generic algorithm and reaction database so that new and updated processes can be incorporated into land models without the need to manually set up the ordinary differential equations to be solved numerically. The reaction database consists of processes of nutrient flow through the terrestrial ecosystems in plants, litter and soil. This framework facilitates effective comparison studies of biogeochemical cycles in an ecosystem using different conceptual models under the same land modeling framework. The approach was first implemented in CLM and benchmarked against simulations from the original CLM-CN code. A case study was then provided to demonstrate the advantages of using the new approach to incorporate a phosphorus cycle into the CLM model. To our knowledge, the phosphorus-incorporated CLM is a new model that can be used to simulate phosphorus limitation on the productivity of terrestrial ecosystems.

  10. The "Musical Emotional Bursts": a validated set of musical affect bursts to investigate auditory affective processing.

    PubMed

    Paquette, Sébastien; Peretz, Isabelle; Belin, Pascal

    2013-01-01

    The Musical Emotional Bursts (MEB) consist of 80 brief musical executions expressing basic emotional states (happiness, sadness and fear) and neutrality. These musical bursts were designed to be the musical analog of the Montreal Affective Voices (MAV)-a set of brief non-verbal affective vocalizations portraying different basic emotions. The MEB consist of short (mean duration: 1.6 s) improvisations on a given emotion or of imitations of a given MAV stimulus, played on a violin (10 stimuli × 4 [3 emotions + neutral]), or a clarinet (10 stimuli × 4 [3 emotions + neutral]). The MEB arguably represent a primitive form of music emotional expression, just like the MAV represent a primitive form of vocal, non-linguistic emotional expression. To create the MEB, stimuli were recorded from 10 violinists and 10 clarinetists, and then evaluated by 60 participants. Participants evaluated 240 stimuli [30 stimuli × 4 (3 emotions + neutral) × 2 instruments] by performing either a forced-choice emotion categorization task, a valence rating task or an arousal rating task (20 subjects per task); 40 MAVs were also used in the same session with similar task instructions. Recognition accuracy of emotional categories expressed by the MEB (n:80) was lower than for the MAVs but still very high with an average percent correct recognition score of 80.4%. Highest recognition accuracies were obtained for happy clarinet (92.0%) and fearful or sad violin (88.0% each) MEB stimuli. The MEB can be used to compare the cerebral processing of emotional expressions in music and vocal communication, or used for testing affective perception in patients with communication problems. PMID:23964255

  11. Breathing and affective picture processing across the adult lifespan.

    PubMed

    Gomez, Patrick; Filippou, Dimitra; Pais, Bruno; von Gunten, Armin; Danuser, Brigitta

    2016-09-01

    The present study investigated differences between healthy younger, middle-aged, and older adults in their respiratory responses to pictures of different valence and arousal. Expiratory time shortened and end-tidal PCO2 decreased with increasing arousal in all age groups; yet, compared to younger adults, older adults' overall change from baseline was smaller for expiratory time and larger for end-tidal PCO2. Contrary to their younger counterparts, older adults' inspiratory time did not shorten with increasing arousal. Inspiratory duty cycle did not covary with affective ratings for younger adults, increased with unpleasantness for middle-aged adults, and increased with arousal for older adults. Thoracic breathing increased with increasing unpleasantness only among older adults. Age had no effects on mean inspiratory flow and minute ventilation, which both augmented as arousal increased. We discuss how age effects on respiratory response magnitude and pattern may depend on age-associated biological changes or reflect age-related differences in emotional processing.

  12. Processes Controlling Temporal Changes in Agriculturally-Affected Groundwater

    NASA Astrophysics Data System (ADS)

    Burow, K. R.; Belitz, K.; Jurgens, B. C.

    2014-12-01

    The National Water Quality Assessment (NAWQA) program of the U.S. Geological Survey includes assessment of groundwater-quality changes with time. To better understand changes at a national scale, NAWQA has implemented smaller scale flow-path studies to evaluate the processes affecting these changes. Flow path studies are designed to sample groundwater of different ages. Wells are sampled for a suite of constituents, including tracers of groundwater age. In the 1990s, a 4.6 km transect of monitoring wells was installed near Fresno in the southern Central Valley of California. The region is dominated by intensive agriculture. The wells were sampled in 1994-95, 2003, and 2013 to provide data on changes in water quality and groundwater age. In 2013, the flow path was extended to a regional scale (30 km) by using existing production wells. Preliminary interpretation of the local-scale flow path indicates that nitrate concentrations in the upper 25 m of the aquifer are higher than the USEPA Maximum Contaminant Level (MCL) for drinking water and variably increase or decrease with time. At intermediate depths (25-40 m), nitrate concentrations are lower and show small to moderate increases. The legacy pesticide 1,2-dibromo-3-chloropropane (DBCP) is degrading at a half-life of about 4-6 years. DBCP is present above the MCL at intermediate depths even though it is has been banned from use for more than 30 years. Both nitrate and DBCP appear to be moving vertically downward through the aquifer. Whereas uranium concentrations are generally below the MCL in the local-scale flow path, concentrations increase along the regional transect, with concentrations nearly an order of magnitude above the MCL in some wells. Further evaluation of processes affecting these constituents (such as source, redox, and mobilization factors) will provide important insight that can be applied to other regions and will assist local water managers.

  13. Biogeochemical weathering under ice: Size matters

    NASA Astrophysics Data System (ADS)

    Wadham, J. L.; Tranter, M.; Skidmore, M.; Hodson, A. J.; Priscu, J.; Lyons, W. B.; Sharp, M.; Wynn, P.; Jackson, M.

    2010-09-01

    The basal regions of continental ice sheets are gaps in our current understanding of the Earth's biosphere and biogeochemical cycles. We draw on existing and new chemical data sets for subglacial meltwaters to provide the first comprehensive assessment of sub-ice sheet biogeochemical weathering. We show that size of the ice mass is a critical control on the balance of chemical weathering processes and that microbial activity is ubiquitous in driving dissolution. Carbonate dissolution fueled by sulfide oxidation and microbial CO2 dominate beneath small valley glaciers. Prolonged meltwater residence times and greater isolation characteristic of ice sheets lead to the development of anoxia and enhanced silicate dissolution due to calcite saturation. We show that sub-ice sheet environments are highly geochemically reactive and should be considered in regional and global solute budgets. For example, calculated solute fluxes from Antarctica (72-130 t yr-1) are the same order of magnitude as those from some of the world's largest rivers and rates of chemical weathering (10-17 t km-2 yr-1) are high for the annual specific discharge (2.3-4.1 × 10-3 m). Our model of chemical weathering dynamics provides important information on subglacial biodiversity and global biogeochemical cycles and may be used to design strategies for the first sampling of Antarctic Subglacial Lakes and other sub-ice sheet environments for the next decade.

  14. Restoration of biogeochemical function in mangrove forests

    USGS Publications Warehouse

    McKee, K.L.; Faulkner, P.L.

    2000-01-01

    Forest structure of mangrove restoration sites (6 and 14 years old) at two locations (Henderson Creek [HC] and Windstar [WS]) in southwest Florida differed from that of mixed-basin forests (>50 years old) with which they were once contiguous. However, the younger site (HC) was typical of natural, developing forests, whereas the older site (WS) was less well developed with low structural complexity. More stressful physicochemical conditions resulting from incomplete tidal flushing (elevated salinity) and variable topography (waterlogging) apparently affected plant survival and growth at the WS restoration site. Lower leaf fall and root production rates at the WS restoration site, compared with that at HC were partly attributable to differences in hydroedaphic conditions and structural development. However, leaf and root inputs at each restoration site were not significantly different from that in reference forests within the same physiographic setting. Macrofaunal consumption of tethered leaves also did not differ with site history, but was dramatically higher at HC compared with WS, reflecting local variation in leaf litter processing rates, primarily by snails (Melampus coffeus). Degradation of leaves and roots in mesh bags was slow overall at restoration sites, however, particularly at WS where aerobic decomposition may have been more limited. These findings indicate that local or regional factors such as salinity regime act together with site history to control primary production and turnover rates of organic matter in restoration sites. Species differences in senescent leaf nitrogen content and degradation rates further suggest that restoration sites dominated by Laguncularia racemosa and Rhizophora mangle should exhibit slower recycling of nutrients compared with natural basin forests where Avicennia germinans is more abundant. Structural development and biogeochemical functioning of restored mangrove forests thus depend on a number of factors, but site

  15. The Water, Energy, and Biogeochemical Model (WEBMOD): A TOPMODEL application developed within the Modular Modeling System

    NASA Astrophysics Data System (ADS)

    Webb, R. M.; Wolock, D. M.; Linard, J. I.; Wieczorek, M. E.

    2004-12-01

    Process-based flow and transport simulation models can help increase understanding of how hydrologic flow paths affect biogeochemical mixing and reactions in watersheds. This presentation describes the Water, Energy, and Biogeochemical Model (WEBMOD), a new model designed to simulate water and chemical transport in both pristine and agricultural watersheds. WEBMOD simulates streamflow using TOPMODEL algorithms and also simulates irrigation, canopy interception, snowpack, and tile-drain flow; these are important processes for successful multi-year simulations of agricultural watersheds. In addition, the hydrologic components of the model are linked to the U.S. Geological Survey's (USGS) geochemical model PHREEQC such that solute chemistry for the hillslopes and streams also are computed. Model development, execution, and calibration take place within the USGS Modular Modeling System. WEBMOD is being validated at ten research watersheds. Five of these watersheds are nearly pristine and comprise the USGS Water, Energy, and Biogeochemical Budget (WEBB) Program field sites: Loch Vale, Colorado; Trout Lake, Wisconsin; Sleepers River, Vermont; Panola Mountain, Georgia; and the Luquillo Experimental Forest, Puerto Rico. The remaining five watersheds contain intensely cultivated fields being studied by USGS National Water Quality Assessment Program: Merced River, California; Granger Drain, Washington; Maple Creek, Nebraska; Sugar Creek, Indiana; and Morgan Creek, Delaware. Model calibration improved understanding of observed variations in soil moisture, solute concentrations, and stream discharge at the five WEBB watersheds and is now being set up to simulate the processes at the five agricultural watersheds that are now ending their first year of data collection.

  16. Biogeochemical factors which regulate the formation and fate of sulfide in wetlands

    NASA Technical Reports Server (NTRS)

    Hines, Mark E.; Lyons, W. Berry; Gaudette, H. E.

    1985-01-01

    Coastal wetland areas occupy a small percentage of the terrestrial environment yet are extremely productive regions which support rapid rates of below ground bacterial activity. Wetlands appear to be significant as biogenic sources of gaseous sulfur, carbon, and nitrogen. These gases are important as tracers of man's activities, and they influence atmospheric chemistry. The interactions among wetland biogeochemical processes regulate the anaerobic production of reduced gases and influence the fate of these volatiles. Therefore, spatial and temporal variations in hydrology, salinity, temperature, and speciation and growth of vegetation affect the type and magnitude of gas emissions thus hindering predictive estimates of gas flux. The research is divided into two major parts, the first is the biogeochemical characterization of a selected tidal wetland area in terms of factors likely to regulate sulfide flux; the second is a direct measurement of gaseous sulfur flux as related to changes in these biogeochemical conditions. Variant factors affecting sulfide flux include the wetlands' tidal range, seasonal salinity, and other hydrological conditions, grass species and plant growth, soil composition, and microbial activity.

  17. How processing digital elevation models can affect simulated water budgets

    USGS Publications Warehouse

    Kuniansky, E.L.; Lowery, M.A.; Campbell, B.G.

    2009-01-01

    For regional models, the shallow water table surface is often used as a source/sink boundary condition, as model grid scale precludes simulation of the water table aquifer. This approach is appropriate when the water table surface is relatively stationary. Since water table surface maps are not readily available, the elevation of the water table used in model cells is estimated via a two-step process. First, a regression equation is developed using existing land and water table elevations from wells in the area. This equation is then used to predict the water table surface for each model cell using land surface elevation available from digital elevation models (DEM). Two methods of processing DEM for estimating the land surface for each cell are commonly used (value nearest the cell centroid or mean value in the cell). This article demonstrates how these two methods of DEM processing can affect the simulated water budget. For the example presented, approximately 20% more total flow through the aquifer system is simulated if the centroid value rather than the mean value is used. This is due to the one-third greater average ground water gradients associated with the centroid value than the mean value. The results will vary depending on the particular model area topography and cell size. The use of the mean DEM value in each model cell will result in a more conservative water budget and is more appropriate because the model cell water table value should be representative of the entire cell area, not the centroid of the model cell.

  18. Mapping pan-Arctic methane emissions at high spatial resolution using an adjoint atmospheric transport and inversion method and process-based wetland and lake biogeochemical models

    NASA Astrophysics Data System (ADS)

    Tan, Z.; Zhuang, Q.; Henze, D. K.; Frankenberg, C.; Dlugokencky, E.; Sweeney, C.; Turner, A. J.

    2015-11-01

    Understanding methane emissions from the Arctic, a fast warming carbon reservoir, is important for projecting changes in the global methane cycle under future climate scenarios. Here we optimize Arctic methane emissions with a nested-grid high-resolution inverse model by assimilating both high-precision surface measurements and column-average SCIAMACHY satellite retrievals of methane mole fraction. For the first time, methane emissions from lakes are integrated into an atmospheric transport and inversion estimate, together with prior wetland emissions estimated by six different biogeochemical models. We find that, the global methane emissions during July 2004-June 2005 ranged from 496.4 to 511.5 Tg yr-1, with wetland methane emissions ranging from 130.0 to 203.3 Tg yr-1. The Arctic methane emissions during July 2004-June 2005 were in the range of 14.6-30.4 Tg yr-1, with wetland and lake emissions ranging from 8.8 to 20.4 Tg yr-1 and from 5.4 to 7.9 Tg yr-1 respectively. Canadian and Siberian lakes contributed most of the estimated lake emissions. Due to insufficient measurements in the region, Arctic methane emissions are less constrained in northern Russia than in Alaska, northern Canada and Scandinavia. Comparison of different inversions indicates that the distribution of global and Arctic methane emissions is sensitive to prior wetland emissions. Evaluation with independent datasets shows that the global and Arctic inversions improve estimates of methane mixing ratios in boundary layer and free troposphere. The high-resolution inversions provide more details about the spatial distribution of methane emissions in the Arctic.

  19. Terrestrial ecosystems and the global biogeochemical silica cycle

    NASA Astrophysics Data System (ADS)

    Conley, Daniel J.

    2002-12-01

    Most research on the global Si cycle has focused nearly exclusively on weathering or the oceanic Si cycle and has not explored the complexity of the terrestrial biogeochemical cycle. The global biogeochemical Si cycle is of great interest because of its impact on global CO2 concentrations through the combined processes of weathering of silicate minerals and transfer of CO2 from the atmosphere to the lithosphere. A sizable pool of Si is contained as accumulations of amorphous silica, or biogenic silica (BSi), in living tissues of growing plants, known as phytoliths, and, after decomposition of organic material, as remains in the soil. The annual fixation of phytolith silica ranges from 60-200 Tmol yr-1 and rivals that fixed in the oceanic biogeochemical cycle (240 Tmol yr-1). Internal recycling of the phytolith pool is intense with riverine fluxes of dissolved silicate to the oceans buffered by the terrestrial biogeochemical Si cycle, challenging the ability of weathering models to predict rates of weathering and consequently, changes in global climate. Consideration must be given to the influence of the terrestrial BSi pool on variations in the global biogeochemical Si cycle over geologic time and the influence man has had on modifying both the terrestrial and aquatic biogeochemical cycles.

  20. Emotional Language Processing: How Mood Affects Integration Processes during Discourse Comprehension

    ERIC Educational Resources Information Center

    Egidi, Giovanna; Nusbaum, Howard C.

    2012-01-01

    This research tests whether mood affects semantic processing during discourse comprehension by facilitating integration of information congruent with moods' valence. Participants in happy, sad, or neutral moods listened to stories with positive or negative endings during EEG recording. N400 peak amplitudes showed mood congruence for happy and sad…

  1. Biogeochemical drivers of phosphatase activity in salt marsh sediments

    NASA Astrophysics Data System (ADS)

    Freitas, Joana; Duarte, Bernardo; Caçador, Isabel

    2014-10-01

    Although nitrogen has become a major concern for wetlands scientists dealing with eutrophication problems, phosphorous represents another key element, and consequently its biogeochemical cycling has a crucial role in eutrophication processes. Microbial communities are a central component in trophic dynamics and biogeochemical processes on coastal systems, since most of the processes in sediments are microbial-mediated due to enzymatic action, including the mineralization of organic phosphorus carried out by acid phosphatase activity. In the present work, the authors investigate the biogeochemical sediment drivers that control phosphatase activities. Authors also aim to assess biogeochemical factors' influence on the enzyme-mediated phosphorous cycling processes in salt marshes. Plant rhizosediments and bare sediments were collected and biogeochemical features, including phosphatase activities, inorganic and organic phosphorus contents, humic acids content and pH, were assessed. Acid phosphatase was found to give the highest contribution for total phosphatase activity among the three pH-isoforms present in salt marsh sediments, favored by acid pH in colonized sediments. Humic acids also appear to have an important role inhibiting phosphatase activity. A clear relation of phosphatase activity and inorganic phosphorous was also found. The data presented reinforces the role of phosphatase in phosphorous cycling.

  2. Using Halogens (Cl, Br, F, I) and Stable Isotopes of Water (δ18O, δ2H) to Trace Hydrological and Biogeochemical Processes in Prairie Wetlands

    NASA Astrophysics Data System (ADS)

    Levy, Z. F.; Lu, Z.; Mills, C. T.; Goldhaber, M. B.; Rosenberry, D. O.; Mushet, D.; Siegel, D. I.; Fiorentino, A. J., II; Gade, M.; Spradlin, J.

    2014-12-01

    Prairie pothole wetlands are ubiquitous features of the Great Plains of North America, and important habitat for amphibians and migratory birds. The salinity of proximal wetlands varies highly due to groundwater-glacial till interactions, which influence wetland biota and associated ecosystem functions. Here we use halogens and stable isotopes of water to fingerprint hydrological and biogeochemical controls on salt cycling in a prairie wetland complex. We surveyed surface, well, and pore waters from a groundwater recharge wetland (T8) and more saline closed (P1) and open (P8) basin discharge wetlands in the Cottonwood Lake Study Area (ND) in August/October 2013 and May 2014. Halogen concentrations varied over a broad range throughout the study area (Cl = 2.2 to 170 mg/L, Br = 13 to 2000 μg/L, F = < 30 (MDL) to 740 μg/L, I = 1 to 538 μg/L). The Cl/Br molar ratios were higher (171 to 574) at the recharge wetland, indicating meteoric sources, and had a tighter and lower range (33 to 320) at the down-gradient sites. The Cl/I molar ratios of waters throughout the site had a wide range (32 to 26,000). Lowest values occurred at the upgradient shore of P1 (32 to 43) due to low Cl concentrations and the center of P1 (196 to 213) where pore water of weathered till underlying 1.2 m of organic-rich sediment and silty clay soil is enriched in I to ~500 µg/L. Stable isotopes of water showed that evaporation-enriched pond water (δ18O = -9.5 to -2.71 ‰) mixes with shallow groundwater in the top 0.6 m of fringing wetland soils and 1.2 m of the substrate in the center of P1. Our results suggest endogenous sources for Br and I within the prairie landscape that may be controlled by biological mechanisms or weathering of shale from glacial till.

  3. Effects of soil data and simulation unit resolution on quantifying changes of soil organic carbon at regional scale with a biogeochemical process model.

    PubMed

    Zhang, Liming; Yu, Dongsheng; Shi, Xuezheng; Xu, Shengxiang; Xing, Shihe; Zhao, Yongcong

    2014-01-01

    Soil organic carbon (SOC) models were often applied to regions with high heterogeneity, but limited spatially differentiated soil information and simulation unit resolution. This study, carried out in the Tai-Lake region of China, defined the uncertainty derived from application of the DeNitrification-DeComposition (DNDC) biogeochemical model in an area with heterogeneous soil properties and different simulation units. Three different resolution soil attribute databases, a polygonal capture of mapping units at 1:50,000 (P5), a county-based database of 1:50,000 (C5) and county-based database of 1:14,000,000 (C14), were used as inputs for regional DNDC simulation. The P5 and C5 databases were combined with the 1:50,000 digital soil map, which is the most detailed soil database for the Tai-Lake region. The C14 database was combined with 1:14,000,000 digital soil map, which is a coarse database and is often used for modeling at a national or regional scale in China. The soil polygons of P5 database and county boundaries of C5 and C14 databases were used as basic simulation units. Results project that from 1982 to 2000, total SOC change in the top layer (0-30 cm) of the 2.3 M ha of paddy soil in the Tai-Lake region was +1.48 Tg C, -3.99 Tg C and -15.38 Tg C based on P5, C5 and C14 databases, respectively. With the total SOC change as modeled with P5 inputs as the baseline, which is the advantages of using detailed, polygon-based soil dataset, the relative deviation of C5 and C14 were 368% and 1126%, respectively. The comparison illustrates that DNDC simulation is strongly influenced by choice of fundamental geographic resolution as well as input soil attribute detail. The results also indicate that improving the framework of DNDC is essential in creating accurate models of the soil carbon cycle.

  4. Climate Variability and Change in a Eutrophic Great Lakes Freshwater Embayment: Shifting Hydrodynamics and the Potential for Indirect Impacts on Biogeochemical Processes, Carbon Cycling and Hypoxia

    NASA Astrophysics Data System (ADS)

    Klump, J. V.; Waples, J. T.

    2008-12-01

    Future changes in the climatic regime of the Great Lakes region have the potential to induce a variety of both direct (e.g. thermal) and indirect (e.g. biogeochemical) alterations in ecosystem function. In the case of the later, we have identified a statistically significant shift in wind direction of the average wind field over the Great Lakes basin that is consistent with a southward migration of the dominant summer storm track. In Green Bay (NW Lake Michigan), we have shown that the new wind field has most likely resulted in periods of decreased thermal stratification and an overall decrease in water mass exchange with Lake Michigan. In subsequent studies, aimed at determining the impact of these shifts in the physical climate regime, time series measurements of currents, turbidity, dissolved oxygen, and the Be-7 activity of particulates in bottom sediments, sediment traps, and suspended particulates have been made over a 3 year period. A tracer of short term particle dynamics, Be-7 (half life 53 d) is useful in estimating particle residence times in the water column, along with episodic sediment deposition and erosion rates, and the average number of deposition/erosion cycles a particle experiences prior to permanent burial in the sediments. Be-7 derived estimates of the age of particulate organic carbon cycling between surface sediments and the overlying waters are on the order of months, and are dependent upon resuspension frequency. Remineralization of organic carbon within this actively resuspended pool of material results in estimated decomposition rates for POC ranging 0.08 to 0.04% per day, a rate intermediate between the rapid remineralization of fresh algal material and post-depositional diagenesis. Comparisons between 1989-90 and 2004-06 show a decrease in resuspension frequency, possibly in response to shifts in regional climatic scale dynamics. This appears to result in an increase in the efficiency of trapping of organic matter in the bay and a

  5. Effects of Soil Data and Simulation Unit Resolution on Quantifying Changes of Soil Organic Carbon at Regional Scale with a Biogeochemical Process Model

    PubMed Central

    Zhang, Liming; Yu, Dongsheng; Shi, Xuezheng; Xu, Shengxiang; Xing, Shihe; Zhao, Yongcong

    2014-01-01

    Soil organic carbon (SOC) models were often applied to regions with high heterogeneity, but limited spatially differentiated soil information and simulation unit resolution. This study, carried out in the Tai-Lake region of China, defined the uncertainty derived from application of the DeNitrification-DeComposition (DNDC) biogeochemical model in an area with heterogeneous soil properties and different simulation units. Three different resolution soil attribute databases, a polygonal capture of mapping units at 1∶50,000 (P5), a county-based database of 1∶50,000 (C5) and county-based database of 1∶14,000,000 (C14), were used as inputs for regional DNDC simulation. The P5 and C5 databases were combined with the 1∶50,000 digital soil map, which is the most detailed soil database for the Tai-Lake region. The C14 database was combined with 1∶14,000,000 digital soil map, which is a coarse database and is often used for modeling at a national or regional scale in China. The soil polygons of P5 database and county boundaries of C5 and C14 databases were used as basic simulation units. Results project that from 1982 to 2000, total SOC change in the top layer (0–30 cm) of the 2.3 M ha of paddy soil in the Tai-Lake region was +1.48 Tg C, −3.99 Tg C and −15.38 Tg C based on P5, C5 and C14 databases, respectively. With the total SOC change as modeled with P5 inputs as the baseline, which is the advantages of using detailed, polygon-based soil dataset, the relative deviation of C5 and C14 were 368% and 1126%, respectively. The comparison illustrates that DNDC simulation is strongly influenced by choice of fundamental geographic resolution as well as input soil attribute detail. The results also indicate that improving the framework of DNDC is essential in creating accurate models of the soil carbon cycle. PMID:24523922

  6. Quantification of Terrestrial Ecosystem Carbon Dynamics in the Conterminous United States Combining a Process-Based Biogeochemical Model and MODIS and AmeriFlux data

    SciTech Connect

    Chen, Min; Zhuang, Qianlai; Cook, David R.; Coulter, Richard L.; Pekour, Mikhail S.; Scott, Russell L.; Munger, J. W.; Bible, Ken

    2011-09-21

    Satellite remote sensing provides continuous temporal and spatial information of terrestrial 24 ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical 25 models, such as the Terrestrial Ecosystem Model (TEM), should provide a more adequate 26 quantification of carbon dynamics of terrestrial ecosystems. Here we use Moderate Resolution 27 Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI), Land Surface Water Index 28 (LSWI) and carbon flux data of AmeriFlux to conduct such a study. We first modify the gross primary 29 production (GPP) modeling in TEM by incorporating EVI and LSWI to account for the effects of the 30 changes of canopy photosynthetic capacity, phenology and water stress. Second, we parameterize and 31 verify the new version of TEM with eddy flux data. We then apply the model to the conterminous 32 United States over the period 2000-2005 at a 0.05o ×0.05o spatial resolution. We find that the new 33 version of TEM generally captured the expected temporal and spatial patterns of regional carbon 34 dynamics. We estimate that regional GPP is between 7.02 and 7.78 Pg C yr-1 and net primary 35 production (NPP) ranges from 3.81 to 4.38 Pg C yr-1 and net ecosystem production (NEP) varies 36 within 0.08-0.73 Pg C yr-1 over the period 2000-2005 for the conterminous United States. The 37 uncertainty due to parameterization is 0.34, 0.65 and 0.18 Pg C yr-1 for the regional estimates of GPP, 38 NPP and NEP, respectively. The effects of extreme climate and disturbances such as severe drought in 39 2002 and destructive Hurricane Katrina in 2005 were captured by the model. Our study provides a 40 new independent and more adequate measure of carbon fluxes for the conterminous United States, 41 which will benefit studies of carbon-climate feedback and facilitate policy-making of carbon 42 management and climate.

  7. Quantification of terrestrial ecosystem carbon dynamics in the conterminous United States combining a process-based biogeochemical model and MODIS and AmeriFlux data

    SciTech Connect

    Chen, Min; Zhuang, Qianlai; Cook, D.; Coulter, Richard L.; Pekour, Mikhail S.; Scott, Russell L.; Munger, J. W.; Bible, Ken

    2011-08-31

    Satellite remote sensing provides continuous temporal and spatial information of terrestrial ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical models, such as the Terrestrial Ecosystem Model (TEM), should provide a more adequate quantification of carbon dynamics of terrestrial ecosystems. Here we use Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI), Land Surface Water Index (LSWI) and carbon flux data of AmeriFlux to conduct such a study. We first modify the gross primary production (GPP) modeling in TEM by incorporating EVI and LSWI to account for the effects of the changes of canopy photosynthetic capacity, phenology and water stress. Second, we parameterize and verify the new version of TEM with eddy flux data. We then apply the model to the conterminous United States over the period 2000-2005 at a 0.05-0.05 spatial resolution. We find that the new version of TEM made improvement over the previous version and generally captured the expected temporal and spatial patterns of regional carbon dynamics. We estimate that regional GPP is between 7.02 and 7.78 PgC yr{sup -1} and net primary production (NPP) ranges from 3.81 to 4.38 Pg Cyr{sup -1} and net ecosystem production (NEP) varies within 0.08- 0.73 PgC yr{sup -1} over the period 2000-2005 for the conterminous United States. The uncertainty due to parameterization is 0.34, 0.65 and 0.18 PgC yr{sup -1} for the regional estimates of GPP, NPP and NEP, respectively. The effects of extreme climate and disturbances such as severe drought in 2002 and destructive Hurricane Katrina in 2005 were captured by the model. Our study provides a new independent and more adequate measure of carbon fluxes for the conterminous United States, which will benefit studies of carbon-climate feedback and facilitate policy-making of carbon management and climate.

  8. A biogeochemical cycle for aluminium?

    PubMed

    Exley, Christopher

    2003-09-15

    The elaboration of biogeochemical cycles for elements which are known to be essential for life has enabled a broad appreciation of the homeostatic mechanisms which underlie element essentiality. In particular they can be used effectively to identify any part played by human activities in element cycling and to predict how such activities might impact upon the lithospheric and biospheric availability of an element in the future. The same criteria were the driving force behind the construction of a biogeochemical cycle for aluminium, a non-essential element which is a known ecotoxicant and a suspected health risk in humans. The purpose of this exercise was to examine the concept of a biogeochemical cycle for aluminium and not to review the biogeochemistry of this element. The cycle as presented is rudimentary and qualitative though, even in this nascent form, it is informative and predictive and, for these reasons alone, it is deserving of future quantification. A fully fledged biogeochemical cycle for aluminium should explain the biospheric abundance of this element and whether we should expect its (continued) active involvement in biochemical evolution.

  9. Processes Affecting Nitrogen Speciation in a Karst Aquifer

    NASA Astrophysics Data System (ADS)

    Mahler, B. J.; Musgrove, M.; Wong, C. I.

    2011-12-01

    Like many karst aquifers, the Barton Springs segment of the Edwards aquifer, in central Texas, is in an area undergoing rapid growth in population, and there is concern as to how increased amounts of wastewater might affect groundwater quality. We measured concentrations and estimated loads of nitrogen (N) species in recharge to and discharge from the Barton Springs segment of the Edwards aquifer, central Texas, to evaluate processes affecting the transport and fate of N species in groundwater. Water samples were collected during 17 months (November 2008-March 2010) from five streams that contribute about 85% of recharge to the aquifer segment and from Barton Springs, the principal point of discharge from the segment. The sampling period spanned a range of climatic conditions from exceptional drought to above-normal rainfall. Samples were analyzed for N species (organic N + ammonia, ammonia, nitrate + nitrite, nitrite); loads of organic N and nitrate were estimated with LOADEST, a regression-based model that uses a time series of streamflow and measured constituent concentrations to estimate constituent loads. Concentrations of organic nitrogen and dissolved oxygen were higher and concentrations of nitrate were lower in surface water than in spring discharge, consistent with conversion of organic nitrogen to nitrate and associated consumption of dissolved oxygen in the aquifer. During the period of the study, the estimated load of organic N in recharge from streams (average daily load [adl] of 39 kg/d) was about 10 times that in Barton Springs discharge (adl of 9.4 kg/d), whereas the estimated load of nitrate in recharge from streams (adl of 123 kg/d) was slightly less than that in Barton Springs discharge (adl of 148 kg/d). The total average N load in recharge from streams and discharge from Barton Springs was not significantly different (adl of 162 and 157 kg/d, respectively), indicating that surface-water recharge can account for all of the N in Barton Springs

  10. Carbon sources and biogeochemical processes in Monticchio maar lakes, Mt Vulture volcano (southern Italy): New geochemical constrains of active degassing of mantle derived fluids

    NASA Astrophysics Data System (ADS)

    Caracausi, A.; Nuccio, P. M.; Favara, R.; Grassa, F.

    2012-04-01

    Since the catastrophic releases of carbon dioxide from the African volcanic lakes Nyos and Monoun in the 1980s, the scientific community draw attention towards all those crater lakes able to accumulate massive amount of CO2, which could be catastrophically released following overturn of their deep waters. This implies a quantification of the gas accumulation rate into the lakes and the knowledge of recharge processes and their evolution in time. In fact the gaseous recharge in a lake occurs at alarming rates, when an active degassing of hazardous nature volatiles occurs into the lakes and the structure and dynamic of the lake permit the accumulation of gases into the water. The Monticchio lakes, LPM and LGM, occupies two maar craters formed during the last volcanic activity of Mt. Vulture occurred ˜ 140 000 years ago. LPM is a permanently stratified lake, with a thick deep volume of stagnant water and a shallower layer affected by seasonal overturn. On the contrary LGM is a monomittic lake with a complete overturn of the water during winter time. The major dissolved volatiles are methane and CO2. Dissolved helium is in trace amounts and its isotopic signature ranges between 6.1 and 5.3 Ra (Ra is the atmospheric 3He/4He isotopic ratio). These values are within the range of those measured in the olivine fluid inclusions (both of mantle xenoliths and dispersed in the pyroclastics) of LPM maar ejecta. During three years of investigations we observed that dissolved methane in the deep waters of LGM drastically decreases in wintertime as consequence of the complete overturn of the water. The isotopic signature of methane in the deepest portions of LGM (both sediment and water) is quite stable with time and highlights a biogenic origin, being produced both by acetate fermentation and by CO2-reduction in variable proportions. In contrast, a higher contribution of methane produced via CO2 reduction characterizes sediments at shallower depths. At LPM, there is a great

  11. Sources and Processes Affecting Particulate Matter Pollution over North China

    NASA Astrophysics Data System (ADS)

    Zhang, L.; Shao, J.; Lu, X.; Zhao, Y.; Gong, S.; Henze, D. K.

    2015-12-01

    Severe fine particulate matter (PM2.5) pollution over North China has received broad attention worldwide in recent years. Better understanding the sources and processes controlling pollution over this region is of great importance with urgent implications for air quality policy. We will present a four-dimensional variational (4D-Var) data assimilation system using the GEOS-Chem chemical transport model and its adjoint model at 0.25° × 0.3125° horizontal resolution, and apply it to analyze the factors affecting PM2.5 concentrations over North China. Hourly surface observations of PM2.5 and sulfur dioxide (SO2) from the China National Environmental Monitoring Center (CNEMC) can be assimilated into the model to evaluate and constrain aerosol (primary and precursors) emissions. Application of the data assimilation system to the APEC period (the Asia-Pacific Economic Cooperation summit; 5-11 November 2014) shows that 46% of the PM2.5 pollution reduction during APEC ("The APEC Blue") can be attributed to meteorology conditions and the rest 54% to emission reductions due to strict emission controls. Ammonia emissions are shown to significantly contribute to PM2.5 over North China in the fall. By converting sulfuric acid and nitric acid to longer-lived ammonium sulfate and ammonium nitrate aerosols, ammonia plays an important role in promoting their regional transport influences. We will also discuss the pathways and mechanisms of external long-range transport influences to the PM2.5 pollution over North China.

  12. Addiction Motivation Reformulated: An Affective Processing Model of Negative Reinforcement

    ERIC Educational Resources Information Center

    Baker, Timothy B.; Piper, Megan E.; McCarthy, Danielle E.; Majeskie, Matthew R.; Fiore, Michael C.

    2004-01-01

    This article offers a reformulation of the negative reinforcement model of drug addiction and proposes that the escape and avoidance of negative affect is the prepotent motive for addictive drug use. The authors posit that negative affect is the motivational core of the withdrawal syndrome and argue that, through repeated cycles of drug use and…

  13. Biogeochemical processes involving dissolved CO2 and CH4 at Albano, Averno, and Monticchio meromictic volcanic lakes (Central-Southern Italy)

    NASA Astrophysics Data System (ADS)

    Cabassi, Jacopo; Tassi, Franco; Vaselli, Orlando; Fiebig, Jens; Nocentini, Matteo; Capecchiacci, Francesco; Rouwet, Dmitri; Bicocchi, Gabriele

    2013-01-01

    measured δ13CTDIC values are not consistent, indicating that CO2 and the main carbon-bearing ion species (HCO3 -) are not in isotopic equilibrium, likely due to the fast kinetics of biochemical processes involving both CO2 and CH4. This study demonstrates that the vertical patterns of the CO2/CH4 ratio and of δ13C-CO2 and δ13C-CH4 are to be regarded as promising tools to detect perturbations, related to different causes, such as changes in the CO2 input from sublacustrine springs, that may affect aerobic and anaerobic layers of meromictic volcanic lakes.

  14. Aerosol indirect effect on biogeochemical cycles and climate.

    PubMed

    Mahowald, Natalie

    2011-11-11

    The net effect of anthropogenic aerosols on climate is usually considered the sum of the direct radiative effect of anthropogenic aerosols, plus the indirect effect of these aerosols through aerosol-cloud interactions. However, an additional impact of aerosols on a longer time scale is their indirect effect on climate through biogeochemical feedbacks, largely due to changes in the atmospheric concentration of CO(2). Aerosols can affect land and ocean biogeochemical cycles by physical forcing or by adding nutrients and pollutants to ecosystems. The net biogeochemical effect of aerosols is estimated to be equivalent to a radiative forcing of -0.5 ± 0.4 watts per square meter, which suggests that reaching lower carbon targets will be even costlier than previously estimated.

  15. Morphological, hydrological, biogeochemical and ecological changes and challenges in river restoration - the Thur River case study

    NASA Astrophysics Data System (ADS)

    Schirmer, M.; Luster, J.; Linde, N.; Perona, P.; Mitchell, E. A. D.; Barry, D. A.; Hollender, J.; Cirpka, O. A.; Schneider, P.; Vogt, T.; Radny, D.; Durisch-Kaiser, E.

    2014-06-01

    River restoration can enhance river dynamics, environmental heterogeneity and biodiversity, but the underlying processes governing the dynamic changes need to be understood to ensure that restoration projects meet their goals, and adverse effects are prevented. In particular, we need to comprehend how hydromorphological variability quantitatively relates to ecosystem functioning and services, biodiversity as well as ground- and surface water quality in restored river corridors. This involves (i) physical processes and structural properties, determining erosion and sedimentation, as well as solute and heat transport behavior in surface water and within the subsurface; (ii) biogeochemical processes and characteristics, including the turnover of nutrients and natural water constituents; and (iii) ecological processes and indicators related to biodiversity and ecological functioning. All these aspects are interlinked, requiring an interdisciplinary investigation approach. Here, we present an overview of the recently completed RECORD (REstored CORridor Dynamics) project in which we combined physical, chemical, and biological observations with modeling at a restored river corridor of the perialpine Thur River in Switzerland. Our results show that river restoration, beyond inducing morphologic changes that reshape the river bed and banks, triggered complex spatial patterns of bank infiltration, and affected habitat type, biotic communities and biogeochemical processes. We adopted an interdisciplinary approach of monitoring the continuing changes due to restoration measures to address the following questions: How stable is the morphological variability established by restoration? Does morphological variability guarantee an improvement in biodiversity? How does morphological variability affect biogeochemical transformations in the river corridor? What are some potential adverse effects of river restoration? How is river restoration influenced by catchment-scale hydraulics

  16. Factors Influencing Phosphorous Cycling in Biogeochemical 'Hot Spots'

    NASA Astrophysics Data System (ADS)

    Saia, S. M.; Walter, M. T.; Buda, A. R.; Carrick, H. J.; Regan, J. M.

    2015-12-01

    Anthropogenic alteration of the phosphorus (P) cycle has led to subsequent soil and water quality issues. For example, P build up in soils due to historic fertilizer application may become biologically available and exacerbate eutrophication and anoxia in nearby water bodies. In the humid Northeastern United States, storm runoff transports P and also stimulates biogeochemical processes, these locations are termed biogeochemical 'hot spots'. Many studies have looked at nitrogen and carbon cycling in biogeochemical hot spots but few have focused on P. We hypothesize the periodic wetting and drying of biogeochemical hot spots promotes a combination of abiotic and biotic processes that influence the mobility of P. To test this hypothesis, we took monthly soil samples (5 cm deep) from May to October in forest, pasture, and cropped land near Ithaca, NY. In-situ measurements taken with each sample included volumetric soil moisture and soil temperature. We also analyzed samples for 'runoff generated' phosphate, nitrate, and sulfate (from 0.01 M CaCl2 extraction), Fe(II), percent organic matter, pH, as well as oxalate extractable and total P, Al, and Fe. We used linear mixed effects models to test how runoff generated phosphate concentrations vary with soil moisture and whether other environmental factors strengthen/weaken this relationship. The knowledge gained from this study will improve our understanding of P cycling in biogeochemical hot spots and can be used to improve the effectiveness of agricultural management practices in the Northeastern United States.

  17. A framework to assess biogeochemical response to ecosystem disturbance using nutrient partitioning ratios

    USGS Publications Warehouse

    Kranabetter, J. Marty; McLauchlan, Kendra K.; Enders, Sara K.; Fraterrigo, Jennifer M.; Higuera, Philip E.; Morris, Jesse L.; Rastetter, Edward B.; Barnes, Rebecca; Buma, Brian; Gavin, Daniel G.; Gerhart, Laci M.; Gillson, Lindsey; Hietz, Peter; Mack, Michelle C.; McNeil, Brenden; Perakis, Steven

    2016-01-01

    Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil and plant nutrient stocks in mature ecosystems represents a characteristic site property. Focusing on nitrogen (N), we hypothesize that this partitioning ratio (soil N: plant N) will undergo a predictable trajectory after disturbance. We investigate the nature of this partitioning ratio with three approaches: (1) nutrient stock data from forested ecosystems in North America, (2) a process-based ecosystem model, and (3) conceptual shifts in site nutrient availability with altered disturbance frequency. Partitioning ratios could be applied to a variety of ecosystems and successional states, allowing for improved temporal scaling of disturbance events. The generally short-term empirical evidence for recovery trajectories of nutrient stocks and partitioning ratios suggests two areas for future research. First, we need to recognize and quantify how disturbance effects can be accreting or depleting, depending on whether their net effect is to increase or decrease ecosystem nutrient stocks. Second, we need to test how altered disturbance frequencies from the present state may be constructive or destructive in their effects on biogeochemical cycling and nutrient availability. Long-term studies, with repeated sampling of soils and vegetation, will be essential in further developing this framework of biogeochemical response to disturbance.

  18. Astronomical Forcing of Salt Marsh Biogeochemical Cascades

    NASA Astrophysics Data System (ADS)

    Morris, J. T.; Sundberg, K.

    2008-12-01

    Astronomically forced changes in the hydroperiod of a salt marsh affect the rate of marsh primary production leading to a biogeochemical cascade. For example, salt marsh primary production and biogeochemical cycles in coastal salt marshes are sensitive to the 18.6-year lunar nodal cycle, which alters the tidal amplitude by about 5 cm. For marshes that are perched high in the tidal frame, a relatively small increase in tidal amplitude and flooding lowers sediment salinity and stimulates primary production. Porewater sulfide concentrations are positively correlated with tidal amplitude and vary on the same cycle as primary production. Soluble reactive phosphate and ammonium concentrations in pore water also vary on this 18.6- year cycle. Phosphate likely responds to variation in the reaction of sulfide with iron-phosphate compounds, while the production of ammonium in sediments is coupled to the activity of diazotrophs that are carbon- limited and, therefore, are regulated by primary productivity. Ammonium also would accumulate when sulfides block nitrification. These dependencies work as a positive feedback between primary production and nutrient supply and are predictive of the near-term effects of sea-level rise.

  19. Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon

    USGS Publications Warehouse

    Kuwabara, James S.; Topping, Brent R.; Carter, James L.; Carlson, Rick A; Parchaso, Francis; Fend, Steven V.; Stauffer-Olsen, Natalie; Manning, Andrew J.; Land, Jennie M.

    2016-09-30

    Executive SummaryMultiple sampling trips during calendar years 2013 through 2015 were coordinated to provide measurements of interdependent benthic processes that potentially affect contaminant transport in Upper Klamath Lake (UKL), Oregon. The measurements were motivated by recognition that such internal processes (for example, solute benthic flux, bioturbation and solute efflux by benthic invertebrates, and physical groundwater-surface water interactions) were not integrated into existing management models for UKL. Up until 2013, all of the benthic-flux studies generally had been limited spatially to a number of sites in the northern part of UKL and limited temporally to 2–3 samplings per year. All of the benthic invertebrate studies also had been limited to the northern part of the lake; however, intensive temporal (weekly) studies had previously been completed independent of benthic-flux studies. Therefore, knowledge of both the spatial and temporal variability in benthic flux and benthic invertebrate distributions for the entire lake was lacking. To address these limitations, we completed a lakewide spatial study during 2013 and a coordinated temporal study with weekly sampling of benthic flux and benthic invertebrates during 2014. Field design of the spatially focused study in 2013 involved 21 sites sampled three times as the summer cyanobacterial bloom developed (that is, May 23, June 13, and July 3, 2013). Results of the 27-week, temporally focused study of one site in 2014 were summarized and partitioned into three periods (referred to herein as pre-bloom, bloom and post-bloom periods), each period involving 9 weeks of profiler deployments, water column and benthic sampling. Partitioning of the pre-bloom, bloom, and post-bloom periods were based on water-column chlorophyll concentrations and involved the following date intervals, respectively: April 15 through June 10, June 17 through August 13, and August 20 through October 16, 2014. To examine

  20. Biogeochemical modeling at mass extinction boundaries

    NASA Technical Reports Server (NTRS)

    Rampino, M. R.; Caldeira, K. G.

    1991-01-01

    The causes of major mass extinctions is a subject of considerable interest to those concerned with the history and evolution of life on earth. The primary objectives of the proposed plan of research are: (1) to develop quantitative time-dependent biogeochemical cycle models, coupled with an ocean atmosphere in order to improve the understanding of global scale physical, chemical, and biological processes that control the distribution of elements important for life at times of mass extinctions; and (2) to develop a comprehensive data base of the best available geochemical, isotopic, and other relevant geologic data from sections across mass extinction boundaries. These data will be used to constrain and test the biogeochemical model. These modeling experiments should prove useful in: (1) determining the possible cause(s) of the environmental changes seen at bio-event boundaries; (2) identifying and quantifying little-known feedbacks among the oceans, atmosphere, and biosphere; and (3) providing additional insights into the possible responses of the earth system to perturbations of various timescales. One of the best known mass extinction events marks the Cretaceous/Tertiary (K/T) boundary (66 Myr ago). Data from the K/T boundary are used here to constrain a newly developed time-dependent biogeochemical cycle model that is designed to study transient behavior of the earth system. Model results predict significant fluctuations in ocean alkalinity, atmospheric CO2, and global temperatures caused by extinction of calcareous plankton and reduction in the sedimentation rates of pelagic carbonates and organic carbon. Oxygen-isotome and other paleoclimatic data from K/T time provide some evidence that such climatic fluctuations may have occurred, but stabilizing feedbacks may have acted to reduce the ocean alkalinity and carbon dioxide fluctuations.

  1. Genotypic variation in tomatoes affecting processing and antioxidant attributes.

    PubMed

    Siddiqui, Mohammed Wasim; Ayala-Zavala, J F; Dhua, R S

    2015-01-01

    Tomatoes are widely consumed either raw or after processing and can provide a significant proportion of the total antioxidants in the diet associated with beneficial health properties. Over the last two or three decades an increasing interest for processing and antioxidant attributes in tomatoes has arisen. The screening of processing attributes of tomatoes is subject of a large number of articles; however, special interest has been addressed to the biochemical composition. The postharvest and industrial processing of tomato in tomato-based products includes several steps. Processing and antioxidant characteristics of the raw fruit are important considering the processing steps and final product. To respond to consumer and industrial complaints, breeders should know the range of genetic variability available in tomato resources, including local genotypes, for improving the mentioned attributes. Characterization and conservation of traditional and modern varieties is a major goal for their preservation and utilization. The bioactive contents have an impact on the processed destines so their stability must be contemplated while selecting the tomato fruits for processing. The endeavor of this review was to examine comprehensively the variation in processing and antioxidant attributes among tomatoes. Role of tomato peel in terms of bioactive contents and information on high pigment (hp) tomato mutants are also touched to some extent. Probably, patterns of variation identified/discussed in this paper would give impetus for planning breeding strategies to develop and improve the new processing cultivars with good antioxidant status.

  2. How Word Frequency Affects Morphological Processing in Monolinguals and Bilinguals

    ERIC Educational Resources Information Center

    Lehtonen, Minna; Laine, Matti

    2003-01-01

    The present study investigated processing of morphologically complex words in three different frequency ranges in monolingual Finnish speakers and Finnish-Swedish bilinguals. By employing a visual lexical decision task, we found a differential pattern of results in monolinguals vs. bilinguals. Monolingual Finns seemed to process low frequency and…

  3. Factors Affecting Location Decisions of Food Processing Plants

    NASA Astrophysics Data System (ADS)

    Turhan, Sule; Canan Ozbag, Basak; Cetin, Bahattin

    The main aim of this study is to examine the determinants of location choices for food processing plants using the results of 59 personal surveys. The 61.3% of the food processing plants that were interviewed are small scale plants, 9.1% are large scale plants and 29.6% are medium scale plants. Sixteen of the firms process vegetables, 12 process poultry, 12 process dairy and 9 process seafood products. Business climate factors are divided into six categories (market, infrastructure, raw material, labor, personal and environmental) and 17 specific location factors are considered. The survey responses are analyzed by types of raw materials processed and by plant size. 43.7, 55.3 and 42.2% of the respondents cited categories of Market, Raw Material and Infrastructure respectively as important, while 44.3, 50.7 and 74.4% of the respondents cited, labor, personal and environmental regulation categories of as not important. Thus survey findings indicate that plant location choices are mainly driven by market, raw material and infra structural factors. Environmental factors such as environmental regulations and permissions are relatively insignificant.

  4. Drying process strongly affects probiotics viability and functionalities.

    PubMed

    Iaconelli, Cyril; Lemetais, Guillaume; Kechaou, Noura; Chain, Florian; Bermúdez-Humarán, Luis G; Langella, Philippe; Gervais, Patrick; Beney, Laurent

    2015-11-20

    Probiotic formulations are widely used and are proposed to have a variety of beneficial effects, depending on the probiotic strains present in the product. The impact of drying processes on the viability of probiotics is well documented. However, the impact of these processes on probiotics functionality remains unclear. In this work, we investigated variations in seven different bacterial markers after various desiccation processes. Markers were composed of four different viability evaluation (combining two growth abilities and two cytometric measurements) and in three in vitro functionalities: stimulation of IL-10 and IL-12 production by PBMCs (immunomodulation) and bacterial adhesion to hexadecane. We measured the impact of three drying processes (air-drying, freeze-drying and spray-drying), without the use of protective agents, on three types of probiotic bacteria: Bifidobacterium bifidum, Lactobacillus plantarum and Lactobacillus zeae. Our results show that the bacteria respond differently to the three different drying processes, in terms of viability and functionality. Drying methods produce important variations in bacterial immunomodulation and hydrophobicity, which are correlated. We also show that adherence can be stimulated (air-drying) or inhibited (spray-drying) by drying processes. Results of a multivariate analysis show no direct correlation between bacterial survival and functionality, but do show a correlation between probiotic responses to desiccation-rewetting and the process used to dry the bacteria.

  5. Process Formulations And Curing Conditions That Affect Saltstone Properties

    SciTech Connect

    Reigel, M. M.; Pickenheim, B. R.; Daniel, W. E.

    2012-09-28

    The first objective of this study was to analyze saltstone fresh properties to determine the feasibility of reducing the formulation water to premix (w/p) ratio while varying the amount of extra water and admixtures used during processing at the Saltstone Production Facility (SPF). The second part of this study was to provide information for understanding the impact of curing conditions (cure temperature, relative humidity (RH)) and processing formulation on the performance properties of cured saltstone.

  6. Studies of dynamical processes affecting the distribution of stratospheric ozone

    NASA Technical Reports Server (NTRS)

    Bowman, Kenneth P.

    1993-01-01

    The purpose of the research was to understand large-scale tracer transport processes in the stratosphere. Two approaches were taken. The first is analysis of tracer observations, especially satellite observations of ozone concentration and total column ozone. The second is numerical simulation of tracer transport processes. Topics researched include: quasi-biennial oscillation (QBO) and stratospheric ozone; mixing in the polar vortices; polar stratospheric clouds (PSC) properties from Antarctic lidar data; and statistical methods for numerical experiments.

  7. Personality interacts with implicit affect to predict performance in analytic versus holistic processing.

    PubMed

    Kazén, Miguel; Kuhl, Julius; Quirin, Markus

    2015-06-01

    Both theoretical approaches and empirical evidence suggest that negative affect fosters analytic processing, whereas positive affect fosters holistic processing, but these effects are inconsistent. We aim to show that (a) differences in affect regulation abilities ("action orientation") and (b) implicit more so than self-reported affect assessment need to be considered to advance our understanding of these processes. Forty participants were asked to verify whether a word was correctly or incorrectly spelled to measure analytic processing, as well as to intuitively assess whether sets of three words were coherent (remote associates task) to measure holistic processing. As expected, implicit but not explicit negative affect interacted with low action orientation ("state orientation") to predict higher d' performance in word spelling, whereas implicit but not explicit positive affect interacted with high action orientation to predict higher d' performance in coherence judgments for word triads. Results are interpreted according to personality systems interaction theory. These findings suggest that affect and affect changes should be measured explicitly and implicitly to investigate affect-cognition interactions. Moreover, they suggest that good affect regulators benefit from positive affect for holistic processing, whereas bad affect regulators benefit from negative affect for analytical processing. PMID:24725069

  8. Psychometric Characteristics of the EEAA (Scale of Affective Strategies in the Learning Process)

    ERIC Educational Resources Information Center

    Villardón-Gallego, Lourdes; Yániz, Concepción

    2014-01-01

    Introduction: Affective strategies for coping with affective states linked to the learning process may be oriented toward controlling emotions or toward controlling motivation. Both types affect performance, directly and indirectly. The objective of this research was to design an instrument for measuring the affective strategies used by university…

  9. Coupled Biogeochemical Processes Governing the Stability of Bacteriogenic Uraninite and Release of U(VI) in Heterogeneous Media: Molecular to Meter Scales

    SciTech Connect

    Bargar, John R.

    2006-11-15

    In-situ reductive biotransformation of subsurface U(VI) to U(IV) (as ?UO2?) has been proposed as a bioremediation method to immobilize uranium at contaminated DOE sites. The chemical stability of bacteriogenic ?UO2? is the seminal issue governing its success as an in-situ waste form in the subsurface. The structure and properties of chemically synthesized UO2+x have been investigated in great detail. It has been found to exhibit complex structural disorder, with nonstoichiometry being common, hence the designation ?UO2+x?, where 0 < x < 0.25. Little is known about the structures and properties of the important bacteriogenic analogs, which are believed to occur as nanoparticles in the environment. Chemically synthesized UO2+x exhibits an open fluorite structure and is known to accommodate significant doping of divalent cations. The extent to which bacteriogenic UO2+x incorporates common ground water cations (e.g., Ca2+) has not been investigated, and little is known about nonstoichiometry and structure defects in the bacteriogenic material. Particle size, nonstoichiometry, and doping may significantly alter the reactivity, and hence stability, of bacteriogenic UO2+x in the subsurface. The presence of associated sulfide minerals, and solid phase oxidants such as bacteriogenic Mn oxides may also affect the longevity of bacteriogenic UO2 in the subsurface.

  10. Can Process Portfolios Affect Students' Writing Self-Efficacy?

    ERIC Educational Resources Information Center

    Nicolaidou, Iolie

    2012-01-01

    Can process portfolios that support students in goal setting, reflection, self-evaluation and feedback have a positive impact on students' writing self-efficacy? This article presents the findings of a yearlong study conducted in three 4th grade elementary classes in Cyprus where paper-based and web-based portfolios were implemented to help…

  11. Factors Affecting the Processing of Epoxy Film Adhesives

    NASA Technical Reports Server (NTRS)

    Pike, R. A.

    1985-01-01

    The increasing awareness that adhesive performance is controlled not only by the condition of the adherend surface but also the condition or state of the adhesive and the process parameters used during fabrication is expected to result in improved reliability, as well as bond performance. The critical process variables which have been found to control adhesive bond formation and ultimate bond strength in 250F and 350F curing epoxy adhesives are described in terms of fabrication parameters and adhesive characteristics. These include the heat-up rate and cure temperature during processing and the adhesive moisture content and age condition (degree of advancement). The diagnostic methods used to delineate the effects of these process variables on adhesive performance are illustrated. These are dielectric, thermomechanical (TMA) and dynamic mechanical (DMA) analyses. Correlation of test results with measured mechanical tensile lap shear strengths of bonded joints is presented and the results briefly discussed in terms of the additives and hardeners used in the adhesive systems.

  12. Stimulus Characteristics Affect Humor Processing in Individuals with Asperger Syndrome

    ERIC Educational Resources Information Center

    Samson, Andrea C.; Hegenloh, Michael

    2010-01-01

    The present paper aims to investigate whether individuals with Asperger syndrome (AS) show global humor processing deficits or whether humor comprehension and appreciation depends on stimulus characteristics. Non-verbal visual puns, semantic and Theory of Mind cartoons were rated on comprehension, funniness and the punchlines were explained. AS…

  13. Distal Prosodic Context Affects Word Segmentation and Lexical Processing

    ERIC Educational Resources Information Center

    Dilley, Laura C.; McAuley, J. Devin

    2008-01-01

    Three experiments investigated the role of distal (i.e., nonlocal) prosody in word segmentation and lexical processing. In Experiment 1, prosodic characteristics of the initial five syllables of eight-syllable sequences were manipulated; the final portions of these sequences were lexically ambiguous (e.g., "note bookworm", "notebook worm"). Distal…

  14. Critical processes affecting Cryptosporidium oocyst survival in the environment.

    PubMed

    King, B J; Monis, P T

    2007-03-01

    Cryptosporidium are parasitic protozoans that cause gastrointestinal disease and represent a significant risk to public health. Cryptosporidium oocysts are prevalent in surface waters as a result of human, livestock and native animal faecal contamination. The resistance of oocysts to the concentrations of chlorine and monochloramine used to disinfect potable water increases the risk of waterborne transmission via drinking water. In addition to being resistant to commonly used disinfectants, it is thought that oocysts can persist in the environment and be readily mobilized by precipitation events. This paper will review the critical processes involved in the inactivation or removal of oocysts in the terrestrial and aquatic environments and consider how these processes will respond in the context of climate change. PMID:17096874

  15. Brain responses during sentence reading: visual input affects central processes.

    PubMed

    Gunter, T C; Friederici, A D; Hahne, A

    1999-10-19

    The effect of visual contrast on sentence reading was investigated using event-related brain potentials (ERPs). Under the low contrast condition semantic integration as reflected in the N400 ERP component was delayed to some degree. The left anterior negativity (LAN) reflecting initial syntactic processes, in contrast, seemed to change its characteristics as a function of visual input. In the high contrast condition the LAN preceded the P200 component whereas in the low contrast condition it was present after this component. These ERP-data from word-by-word sentence reading together with prior results from sentence listening suggest that the physical characteristics of the input must fall within a certain optimal range to guarantee ERP-effects of fast initial syntactic processes.

  16. The NEON Aquatic Network: Expanding the Availability of Biogeochemical Data

    NASA Astrophysics Data System (ADS)

    Vance, J. M.; Bohall, C.; Fitzgerald, M.; Utz, R.; Parker, S. M.; Roehm, C. L.; Goodman, K. J.; McLaughlin, B.

    2013-12-01

    Aquatic ecosystems are facing unprecedented pressure from climate change and land-use practices. Invasive species, whether plant, animal, insect or microbe present additional threat to aquatic ecosystem services. There are significant scientific challenges to understanding how these forces will interact to affect aquatic ecosystems, as the flow of energy and materials in the environment is driven by multivariate and non-linear biogeochemical cycles. The National Ecological Observatory Network (NEON) will collect and provide observational data across multiple scales. Sites were selected to maximize representation of major North American ecosystems using a multivariate geographic clustering method that partitioned the continental US, AK, HI, and Puerto Rico into 20 eco-climatic domains. The NEON data collection systems and methods are designed to yield standardized, near real-time data subjected to rigorous quality controls prior to public dissemination through an online data portal. NEON will collect data for 30 years to facilitate spatial-temporal analysis of environmental responses and drivers of ecosystem change, ranging from local through continental scales. Here we present the NEON Aquatic Network, a multi-parameter network consisting of a combination of in situ sensor and observational data. This network will provide data to examine biogeochemical, biological, hydrologic and geomorphic metrics at 36 sites, which are a combination of small 1st/2nd order wadeable streams, large rivers and lakes. A typical NEON Aquatic site will host up to two in-stream sensor sets designed to collect near-continuous water quality data (e.g. pH/ORP, temperature, conductivity, dissolved oxygen, CDOM) along with up to 8 shallow groundwater monitoring wells (level, temp., cond.), and a local meteorological station (e.g. 2D wind speed, PAR, barometric pressure, temperature, net radiation). These coupled sensor suites will be complemented by observational data (e.g. water

  17. Understanding processes affecting mineral deposits in humid environments

    USGS Publications Warehouse

    Seal, Robert R., II; Ayuso, Robert A.

    2011-01-01

    Recent interdisciplinary studies by the U.S. Geological Survey have resulted in substantial progress toward understanding the influence that climate and hydrology have on the geochemical signatures of mineral deposits and the resulting mine wastes in the eastern United States. Specific areas of focus include the release, transport, and fate of acid, metals, and associated elements from inactive mines in temperate coastal areas and of metals from unmined mineral deposits in tropical to subtropical areas; the influence of climate, geology, and hydrology on remediation options for abandoned mines; and the application of radiogenic isotopes to uniquely apportion source contributions that distinguish natural from mining sources and extent of metal transport. The environmental effects of abandoned mines and unmined mineral deposits result from a complex interaction of a variety of chemical and physical factors. These include the geology of the mineral deposit, the hydrologic setting of the mineral deposit and associated mine wastes, the chemistry of waters interacting with the deposit and associated waste material, the engineering of a mine as it relates to the reactivity of mine wastes, and climate, which affects such factors as temperature and the amounts of precipitation and evapotranspiration; these factors, in turn, influence the environmental behavior of mineral deposits. The role of climate is becoming increasingly important in environmental investigations of mineral deposits because of the growing concerns about climate change.

  18. Effect of Biogeochemical Redox Processes on the Fate and Transport of As and U at an Abandoned Uranium Mine Site: an X-ray Absorption Spectroscopy Study

    SciTech Connect

    Troyer, Lyndsay D.; Stone, James J.; Borch, Thomas

    2014-01-28

    Although As can occur in U ore at concentrations up to 10 wt-%, the fate and transport of both U and As at U mine tailings have not been previously investigated at a watershed scale. The major objective of this study was to determine primary chemical and physical processes contributing to transport of both U and As to a down gradient watershed at an abandoned U mine site in South Dakota. Uranium is primarily transported by erosion at the site, based on decreasing concentrations in sediment with distance from the tailings. equential extractions and U X-ray absorption near-edge fine structure (XANES) fitting indicate that U is immobilised in a near-source sedimentation pond both by prevention of sediment transport and by reduction of UVI to UIV. In contrast to U, subsequent release of As to the watershed takes place from the pond partially due to reductive dissolution of Fe oxy(hydr)oxides. However, As is immobilised by adsorption to clays and Fe oxy(hydr)oxides in oxic zones and by formation of As–sulfide mineral phases in anoxic zones down gradient, indicated by sequential extractions and As XANES fitting. This study indicates that As should be considered during restoration of uranium mine sites in order to prevent transport.

  19. Diesel oil volatilization processes affected by selected porous media.

    PubMed

    Ma, Yanfei; Zheng, Xilai; Anderson, S H; Lu, Jie; Feng, Xuedong

    2014-03-01

    Volatilization plays an important role in attenuating petroleum products in contaminated soils. The objective of this study was to evaluate the influence of wind speed, vessel diameter and mean grain size of porous media on diesel oil volatilization. Experiments were conducted to investigate the volatilization behavior of diesel oil from porous media by weighing contaminated samples pre- and post-volatilization. Three selected field porous media materials were evaluated: Silty Clay Loam, Fine Sand, and Coarse Sand along with six individual sand fractions of the Coarse Sand. Results indicate that increasing wind speed accelerates the diesel oil volatilization process, especially for wind speeds below 2.10ms(-1). The low-carbon components of diesel oil volatilize more rapidly, with the effects of wind speed more pronounced on C10 to C15 volatilization than on C16 and higher. The volatilization rate coefficient of diesel oil increases with decreasing mean grain size of porous media, and with increasing vessel diameter. A power function expressed the relationship with mean grain size. All processes (wind speed, vessel diameter, and mean grain size) were included in an equation which explained over 92% of the measured diesel oil volatilization rate coefficient variations for the experiments. Diesel oil volatilization appears to be boundary-layer regulated to some extent.

  20. From neurons to epidemics: How trophic coherence affects spreading processes

    NASA Astrophysics Data System (ADS)

    Klaise, Janis; Johnson, Samuel

    2016-06-01

    Trophic coherence, a measure of the extent to which the nodes of a directed network are organised in levels, has recently been shown to be closely related to many structural and dynamical aspects of complex systems, including graph eigenspectra, the prevalence or absence of feedback cycles, and linear stability. Furthermore, non-trivial trophic structures have been observed in networks of neurons, species, genes, metabolites, cellular signalling, concatenated words, P2P users, and world trade. Here, we consider two simple yet apparently quite different dynamical models—one a susceptible-infected-susceptible epidemic model adapted to include complex contagion and the other an Amari-Hopfield neural network—and show that in both cases the related spreading processes are modulated in similar ways by the trophic coherence of the underlying networks. To do this, we propose a network assembly model which can generate structures with tunable trophic coherence, limiting in either perfectly stratified networks or random graphs. We find that trophic coherence can exert a qualitative change in spreading behaviour, determining whether a pulse of activity will percolate through the entire network or remain confined to a subset of nodes, and whether such activity will quickly die out or endure indefinitely. These results could be important for our understanding of phenomena such as epidemics, rumours, shocks to ecosystems, neuronal avalanches, and many other spreading processes.

  1. Does Signal Degradation Affect Top-Down Processing of Speech?

    PubMed

    Wagner, Anita; Pals, Carina; de Blecourt, Charlotte M; Sarampalis, Anastasios; Başkent, Deniz

    2016-01-01

    Speech perception is formed based on both the acoustic signal and listeners' knowledge of the world and semantic context. Access to semantic information can facilitate interpretation of degraded speech, such as speech in background noise or the speech signal transmitted via cochlear implants (CIs). This paper focuses on the latter, and investigates the time course of understanding words, and how sentential context reduces listeners' dependency on the acoustic signal for natural and degraded speech via an acoustic CI simulation.In an eye-tracking experiment we combined recordings of listeners' gaze fixations with pupillometry, to capture effects of semantic information on both the time course and effort of speech processing. Normal-hearing listeners were presented with sentences with or without a semantically constraining verb (e.g., crawl) preceding the target (baby), and their ocular responses were recorded to four pictures, including the target, a phonological (bay) competitor and a semantic (worm) and an unrelated distractor.The results show that in natural speech, listeners' gazes reflect their uptake of acoustic information, and integration of preceding semantic context. Degradation of the signal leads to a later disambiguation of phonologically similar words, and to a delay in integration of semantic information. Complementary to this, the pupil dilation data show that early semantic integration reduces the effort in disambiguating phonologically similar words. Processing degraded speech comes with increased effort due to the impoverished nature of the signal. Delayed integration of semantic information further constrains listeners' ability to compensate for inaudible signals. PMID:27080670

  2. The HIV Tat protein affects processing of ribosomal RNA precursor

    PubMed Central

    Ponti, Donatella; Troiano, Maria; Bellenchi, Gian Carlo; Battaglia, Piero A; Gigliani, Franca

    2008-01-01

    Background Inside the cell, the HIV Tat protein is mainly found in the nucleus and nucleolus. The nucleolus, the site of ribosome biogenesis, is a highly organized, non-membrane-bound sub-compartment where proteins with a high affinity for nucleolar components are found. While it is well known that Tat accumulates in the nucleolus via a specific nucleolar targeting sequence, its function in this compartment it still unknown. Results To clarify the significance of the Tat nucleolar localization, we induced the expression of the protein during oogenesis in Drosophila melanogaster strain transgenic for HIV-tat gene. Here we show that Tat localizes in the nucleoli of Drosophila oocyte nurse cells, where it specifically co-localizes with fibrillarin. Tat expression is accompanied by a significant decrease of cytoplasmic ribosomes, which is apparently related to an impairment of ribosomal rRNA precursor processing. Such an event is accounted for by the interaction of Tat with fibrillarin and U3 snoRNA, which are both required for pre-rRNA maturation. Conclusion Our data contribute to understanding the function of Tat in the nucleolus, where ribosomal RNA synthesis and cell cycle control take place. The impairment of nucleolar pre-rRNA maturation through the interaction of Tat with fibrillarin-U3snoRNA complex suggests a process by which the virus modulates host response, thus contributing to apoptosis and protein shut-off in HIV-uninfected cells. PMID:18559082

  3. From neurons to epidemics: How trophic coherence affects spreading processes.

    PubMed

    Klaise, Janis; Johnson, Samuel

    2016-06-01

    Trophic coherence, a measure of the extent to which the nodes of a directed network are organised in levels, has recently been shown to be closely related to many structural and dynamical aspects of complex systems, including graph eigenspectra, the prevalence or absence of feedback cycles, and linear stability. Furthermore, non-trivial trophic structures have been observed in networks of neurons, species, genes, metabolites, cellular signalling, concatenated words, P2P users, and world trade. Here, we consider two simple yet apparently quite different dynamical models-one a susceptible-infected-susceptible epidemic model adapted to include complex contagion and the other an Amari-Hopfield neural network-and show that in both cases the related spreading processes are modulated in similar ways by the trophic coherence of the underlying networks. To do this, we propose a network assembly model which can generate structures with tunable trophic coherence, limiting in either perfectly stratified networks or random graphs. We find that trophic coherence can exert a qualitative change in spreading behaviour, determining whether a pulse of activity will percolate through the entire network or remain confined to a subset of nodes, and whether such activity will quickly die out or endure indefinitely. These results could be important for our understanding of phenomena such as epidemics, rumours, shocks to ecosystems, neuronal avalanches, and many other spreading processes. PMID:27368799

  4. Final Project Report - Coupled Biogeochemical Process Evaluation for Conceptualizing Trichloriethylene Co-Metabolism: Co-Metabolic Enzyme Activity Probes and Modeling Co-Metabolism and Attenuation

    SciTech Connect

    Starr, Robert C; Orr, Brennon R; Lee, M Hope; Delwiche, Mark

    2010-02-26

    Trichloroethene (TCE) (also known as trichloroethylene) is a common contaminant in groundwater. TCE is regulated in drinking water at a concentration of 5 µg/L, and a small mass of TCE has the potential to contaminant large volumes of water. The physical and chemical characteristics of TCE allow it to migrate quickly in most subsurface environments, and thus large plumes of contaminated groundwater can form from a single release. The migration and persistence of TCE in groundwater can be limited by biodegradation. TCE can be biodegraded via different processes under either anaerobic or aerobic conditions. Anaerobic biodegradation is widely recognized, but aerobic degradation is less well recognized. Under aerobic conditions, TCE can be oxidized to non hazardous conditions via cometabolic pathways. This study applied enzyme activity probes to demonstrate that cometabolic degradation of TCE occurs in aerobic groundwater at several locations, used laboratory microcosm studies to determine aerobic degradation rates, and extrapolated lab-measured rates to in situ rates based on concentrations of microorganisms with active enzymes involved in cometabolic TCE degradation. Microcosms were constructed using basalt chips that were inoculated with microorganisms to groundwater at the Idaho National Laboratory Test Area North TCE plume by filling a set of Flow-Through In Situ Reactors (FTISRs) with chips and placing the FTISRs into the open interval of a well for several months. A parametric study was performed to evaluate predicted degradation rates and concentration trends using a competitive inhibition kinetic model, which accounts for competition for enzyme active sites by both a growth substrate and a cometabolic substrate. The competitive inhibition kinetic expression was programmed for use in the RT3D reactive transport package. Simulations of TCE plume evolution using both competitive inhibition kinetics and first order decay were performed.

  5. Demonstrating the Value of Fine-resolution Optical Data for Minimising Aliasing Impacts on Biogeochemical Models of Surface Waters

    NASA Astrophysics Data System (ADS)

    Chappell, N. A.; Jones, T.; Young, P.; Krishnaswamy, J.

    2015-12-01

    There is increasing awareness that under-sampling may have resulted in the omission of important physicochemical information present in water quality signatures of surface waters - thereby affecting interpretation of biogeochemical processes. For dissolved organic carbon (DOC) and nitrogen this under-sampling can now be avoided using UV-visible spectroscopy measured in-situ and continuously at a fine-resolution e.g. 15 minutes ("real time"). Few methods are available to extract biogeochemical process information directly from such high-frequency data. Jones, Chappell & Tych (2014 Environ Sci Technol: 13289-97) developed one such method using optically-derived DOC data based upon a sophisticated time-series modelling tool. Within this presentation we extend the methodology to quantify the minimum sampling interval required to avoid distortion of model structures and parameters that describe fundamental biogeochemical processes. This shifting of parameters which results from under-sampling is called "aliasing". We demonstrate that storm dynamics at a variety of sites dominate over diurnal and seasonal changes and that these must be characterised by sampling that may be sub-hourly to avoid aliasing. This is considerably shorter than that used by other water quality studies examining aliasing (e.g. Kirchner 2005 Phys Rev: 069902). The modelling approach presented is being developed into a generic tool to calculate the minimum sampling for water quality monitoring in systems driven primarily by hydrology. This is illustrated with fine-resolution, optical data from watersheds in temperate Europe through to the humid tropics.

  6. Acute physical exercise affected processing efficiency in an auditory attention task more than processing effectiveness.

    PubMed

    Dutke, Stephan; Jaitner, Thomas; Berse, Timo; Barenberg, Jonathan

    2014-02-01

    Research on effects of acute physical exercise on performance in a concurrent cognitive task has generated equivocal evidence. Processing efficiency theory predicts that concurrent physical exercise can increase resource requirements for sustaining cognitive performance even when the level of performance is unaffected. This hypothesis was tested in a dual-task experiment. Sixty young adults worked on a primary auditory attention task and a secondary interval production task while cycling on a bicycle ergometer. Physical load (cycling) and cognitive load of the primary task were manipulated. Neither physical nor cognitive load affected primary task performance, but both factors interacted on secondary task performance. Sustaining primary task performance under increased physical and/or cognitive load increased resource consumption as indicated by decreased secondary task performance. Results demonstrated that physical exercise effects on cognition might be underestimated when only single task performance is the focus.

  7. Iodine Affects Differentiation and Migration Process in Trophoblastic Cells.

    PubMed

    Olivo-Vidal, Zendy Evelyn; Rodríguez, Roció Coutiño; Arroyo-Helguera, Omar

    2016-02-01

    Iodine deficiency is associated with oxidative stress increase and preeclampsia during gestation, suggesting that iodine concentration plays an important role in the normal placenta physiology. The question raised is to analyze the effect of iodine deficiency on oxidative stress, viability, differentiation, and migration process and changes in the expression of differentiation and migration markers. Iodine deprivation was done using potassium perchlorate (KCLO4) to block sodium iodide symporter (NIS) transporter and 4,4'-diisothiocyanatostilbene-2,2'-disulfonic acid DIDS to inhibit pendrine (PEN) transport for 3-48 h. Then trophoblast cells were treated with low iodine doses of 5-500 μM and high iodine doses of 100-5000 μM. Oxidative stress, viability, and human chorionic gonadotropin (hGC) were measured by colorimetric methods. Migration throphoblast cells were evaluated by both wound healing and Boyden chamber assays. Changes in mRNA expression were analyzed by real-time RT-PCR. Iodine deprivation induces a significant increase of reactive oxygen species (ROS), viability, and migration process vs control cells. We found a significant overregulation in the mRNA's peroxisome proliferator-activated receptor (PPAR-gamma), Snail, and matrix metalloproteinase-9 (MMP-9) mRNA's in cells deprived of iodine, as well as a down glial cell missing-1 (GCM-1) regulation, hGC, pregnancy-associated plasma protein-A (PAPP-A), and E-cadherin mRNA expression. The expression of hypoxic induction factor alpha (HIFα) mRNA does not change with iodine deprivation. In cells deprived of iodine, supplementing low iodine doses (5-500 μM) does not induce any significant changes in viability. However, ROS and migration process were decreased, although we found an increased human chorionic gonadotropin (hCG) secretion as a differentiation marker. In addition, we found that PPAR-gamma, Snail, and MPP-9 mRNAs expression are downregulated with low iodine doses, in contrast with GCM-1, PAPP

  8. Selenium source identification and biogeochemical processes controlling selenium in surface water and biota, Kendrick Reclamation Project, Wyoming, U.S.A.

    USGS Publications Warehouse

    Naftz, D.L.; See, R.B.; Ramirez, P.

    1993-01-01

    The major tributaries draining the Kendrick Reclamation Project (KRP) account for an average of 52% of the total Se load measured in the North Platte River downstream from Casper, Wyoming. The Casper Creek drainage basin contributed the largest Se load of the five tributary sites to the North Platte River. The 4-d average Se concentration in water samples from one site in the part of the North Platte River that receives irrigation return flows exceeded the 5 ??g/l U.S. Environmental Protection Agency's aquatic life criterion five time during a 50-d monitoring period in 1989. In agreement with the water-quality data, muscle and liver tissue rom rainbow trout collected from the same part of the North Platte River had Se concentrations exceeding levels known to cause reproductive failure and chronic Se poisoning. On the basis of Se: Cl, 18O/16O and D/H ratios in water from Goose and Rasmus Lee Lakes (closed-basin systems), the large Se concentrations in those lakes were derived by natural evaporation of irrigation water without leaching of soluble forms of Se from soil or rocks. Water samples from Thirtythree Mile Reservoir and Illco Pond (flow-through systems) showed considerable enrichment in Se over evaporative concentration, presumably due to leaching and desorption of Se from soil and rock. The Se: Cl ratios of irrigation drain water collected from the KRP indicate that leaching and desorption of soluble forms of Se from soils and rocks are the dominant processes in drain water. Results of a Wilcoxon matched-pairs test for 43 paired drain-water samples collected during June and August 1988, indicated there is a statistically larger concentration of Se (0.01 significance level) during the June sampling period. The larger concentrations of Se and other chemical constitutents during the early part of the irrigation season probably were due to dissolution of seleniferous salts that have accumulated in soils within the KRP since the last irrigation season. The large

  9. Silicification of Thermophilic Biofilms: Do Aquificales Affect the Mineralisation Process?

    NASA Astrophysics Data System (ADS)

    Konhauser, K.; Lalonde, S.; Aguiar, P.; Reysenbach, A.

    2003-12-01

    In geothermal environments, biomineralisation is an inevitable consequence of microbes growing in solute-rich waters. The process of silicification is of particular interest due to (1) apparent discrepancies between natural and laboratory silicification rates and (2) siliceous microfossils currently serve as the earliest physical evidence for life on Earth. Although mesophilic microbe-silica interactions have been studied in great detail, there is a paucity of information on the role that thermophiles play in the silicification process, i.e., does their metabolism in any way facilitate silicification and do their cellular remains fossilise? To help resolve some of these uncertainties, a thermophilic, biofilm-forming member of the Aquificales order, Sulfurihydrogenobium azorense, was grown in the presence of various concentrations of silica, ranging from undersaturated to those extremely supersaturated with respect to amorphous silica. Since the chemolithoautotrophic Aquificales use of a wide range and combination of electron donors and acceptors, the bacteria cultured were grown in the presence of H2 with O2, S and Fe(III) as terminal electron acceptors. This study focused on the rates of pH-induced silica polymerisation during a 48 hour interval, when the soluble silica phase was at its most reactive stage, and when the greatest amount of silica immobilisation was likely to occur. S. azorense was found to have no detectable effect on the polymerisation rate of silica under any condition tested, nor did it cause silica to precipitate in undersaturated conditions. In addition, transmission electron microscopy showed that although silica did indeed precipitate from solution, there was no obvious association between solid-phase silica and the cells walls. This suggests that under high silica levels there is such a strong chemical driving force for silica polymerisation, homogeneous nucleation, and ultimately silica precipitation that there is no obvious need for

  10. Quantitative evolution of volcanic surfaces affected by erosional processes

    NASA Astrophysics Data System (ADS)

    Lahitte, Pierre; Boillot-Airaksinen, Kim; Germa, Aurélie; Lavigne, Franck

    2016-04-01

    Variations through time of erosion dynamics, a key point to investigate correlation between climates and landform evolution, still remains poorly documented. One of the main issue in this type of study is the difficulty in determining for how long the erosion has operated. For this purpose, volcanic contexts are particularly suitable for defining the temporal dynamics governing erosion since the age of volcanic activity also constrains the age of emplacement of the surface today eroded, and thus the erosion duration. Furthermore, quantitative analysis of river profiles offers the opportunity to discriminate, among the wide variety of geological phenomena influencing erosion, their respective influence. Quantification of erosion processes and constrain of their signature on reliefs can be addressed by a morphometric approach of river profiles in volcanic environment through the analysis of digital topography (DEM). Break in slope zones, the so-called knickpoints, are usually related to a retreat of the point between the relict channel, upstream, and the adjusted channel, downstream. They are induced by either a lithological contrast, a change in the base level, uplift or eustatism, or a rejuvenation of the age of the volcanic surface. The stream long-profile and its watershed is also investigated by their concavity and hypsometric indexes to determine for how long the complexity and its heterogeneity along the valley incision remain visible. The present study focusses on the erosion of volcanoes in the Lesser Antilles, Reunion Island and Lombok Island (Indonesia). All located in tropical environments, these volcanoes offer a wide diversity of age (30 - 0 Ma) and lithology for investigating the respective influence of geological processes that have induced a large variety of shapes and volcanic history that we try to correlate to geometry of river profiles.

  11. Biogeochemical cycling in the Strait of Georgia.

    PubMed

    Johannessen, S C; Macdonald, R W; Burd, B; van Roodselaar, A

    2008-12-01

    The papers in this special issue present the results of a five-year project to study sedimentary biogeochemical processes in the Strait of Georgia, with special emphasis on the near-field of a large municipal outfall. Included in this special issue are overviews of the sedimentology, benthic biology, status of siliceous sponge reefs and distribution of organic carbon in the water column. Other papers address the cycling of contaminants (PCBs, PBDEs) and redox metals in the sediment, a method to map the extent of the influence of municipal effluent from staining on benthic bivalves, and the relationships among geochemical conditions and benthic abundance and diversity. The latter set of papers addresses the role of municipal effluent as a pathway of organic carbon and other contaminants into the Strait of Georgia and the effect of the effluent on benthic geochemistry and biology. PMID:19022498

  12. Global Change: A Biogeochemical Perspective

    NASA Technical Reports Server (NTRS)

    Mcelroy, M.

    1983-01-01

    A research program that is designed to enhance our understanding of the Earth as the support system for life is described. The program change, both natural and anthropogenic, that might affect the habitability of the planet on a time scale roughly equal to that of a human life is studied. On this time scale the atmosphere, biosphere, and upper ocean are treated as a single coupled system. The need for understanding the processes affecting the distribution of essential nutrients--carbon, nitrogen, phosphorous, sulfur, and water--within this coupled system is examined. The importance of subtle interactions among chemical, biological, and physical effects is emphasized. The specific objectives are to define the present state of the planetary life-support system; to ellucidate the underlying physical, chemical, and biological controls; and to provide the body of knowledge required to assess changes that might impact the future habitability of the Earth.

  13. Early Social Experience Affects the Development of Eye Gaze Processing.

    PubMed

    Senju, Atsushi; Vernetti, Angélina; Ganea, Natasa; Hudry, Kristelle; Tucker, Leslie; Charman, Tony; Johnson, Mark H

    2015-12-01

    Eye gaze is a key channel of non-verbal communication in humans. Eye contact with others is present from birth, and eye gaze processing is crucial for social learning and adult-infant communication. However, little is known about the effect of selectively different experience of eye contact and gaze communication on early social and communicative development. To directly address this question, we assessed 14 sighted infants of blind parents (SIBPs) longitudinally at 6-10 and 12-16 months. Face scanning and gaze following were assessed using eye tracking. In addition, naturalistic observations were made when the infants were interacting with their blind parent and with an unfamiliar sighted adult. Established measures of emergent autistic-like behaviors and standardized tests of cognitive, motor, and linguistic development were also collected. These data were then compared with those obtained from a group of infants of sighted parents. Despite showing typical social skills development overall, infants of blind parents allocated less attention to adult eye movements and gaze direction, an effect that increased between 6-10 and 12-16 months of age. The results suggest that infants adjust their use of adults' eye gaze depending on gaze communication experience from early in life. The results highlight that human functional brain development shows selective experience-dependent plasticity adaptive to the individual's specific social environment.

  14. Processes affecting the CO2 concentrations measured in Greenland ice

    NASA Astrophysics Data System (ADS)

    Anklin, Martin; Barnola, Jean-Marc; Schwander, Jakob; Stauffer, Bernhard; Raynaud, Dominique

    1995-09-01

    Detailed CO2 measurements on ice cores from Greenland and Antarctica show different mean CO2 concentrations for samples at the same gas age. The deviation between Antarctic and Greenland CO2 records raises up to 20 ppmv during the last millennium. Based on the present knowledge of the global carbon cycle we can exclude such a high mean interhemispheric difference of the CO2 concentration between high northern and southern latitudes. Diffusive mixing of the air in the firn smoothes out short term variations of the atmospheric CO2 Concentration. Nevertheless, we observe short term CO2 variations in Greenland ice in the range of 10 20 ppmv, which cannot represent atmospheric CO2 variations. Due to the low temperature at Summit, meltlayers can be excluded for most of the ice and they cannot account for the frequent anomalous short term CO2 variations and the elevated mean CO2 concentration in the Greenland ice. In this work we give some clues, that in situ production of CO2 in Greenland ice could build up excess CO2 after pore close of. Possible chemical reactions are the oxidation of organic carbon and the reaction between acidity and carbonate. We conclude that the carbonate-acidity reaction is the most probable process to explain the excess CO2 in the bubbles. The reaction could take place in very small liquid-like veins in cold ice, where the mobility of impurities is higher than in the ice lattice. At present, there exists no technique to measure the carbonate concentration in the ice directly. However, a comparison of CO2 analyses performed with a dry- and a wet-extraction technique allows to estimate the carbonate content of the ice. This estimate indicates a carbonate concentration in Greenland ice of about 0.4±0.2µmol/l and a much lower concentration in Antarctic ice.

  15. Estimating the Effects of Mountain Pine Beetle Outbreaks on Biophysical and Biogeochemical Variables Using MODIS Products

    NASA Astrophysics Data System (ADS)

    Meddens, A. J.; Hicke, J. A.

    2009-12-01

    Insects such as mountain pine beetle (Dendroctonus ponderosae Hopkins) are major disturbances in forested ecosystems, affecting forest structure and function. In recent decades, mountain pine beetles have affected large forested areas in the United States and Canada. Insect disturbances impact biophysical variables important for atmosphere/ecosystem exchanges of mass, energy, and momentum as well as biogeochemical processes, notably carbon cycling. Our goal was to estimate the effects of insect disturbance, in particular mountain pine beetle infestations, on carbon cycling in Colorado by using MODIS biophysical and biogeochemical data products in conjunction with fine-resolution aerial imagery that identified the infestation locations. We classified a fine-resolution aerial image, acquired on August 13 2008 in Colorado, into five classes: (1) undisturbed forests, (2) red-attack (when needles are red and still on trees), (3) gray-attack (when trees have lost most of their needles), (4) herbaceous vegetation, and (5) non-vegetation. The classified aerial image was evaluated using field observations, and high accuracies were achieved. The classified aerial image was then aggregated to the MODIS resolution to investigate different levels of insect-caused tree mortality (i.e., the percentage of fine-resolution red-attack and gray-attack pixels in the aggregated pixels). MODIS-derived biophysical and biogeochemical products, including gross and net primary production, leaf area index (LAI), and surface albedo were overlaid on locations with the different levels of outbreak severity. Trajectories of these variables across time were extracted and pre- and post-outbreak values were compared. The outcomes of the effects of MPB on biophysical parameters can be used to increase understanding of impacts of insects to forest functioning and carbon cycling in the western United States.

  16. KINETICS AND MECHANISMS OF SOIL BIOGEOCHEMICAL PROCESSES

    EPA Science Inventory

    The application of kinetic studies to soil chemistry is useful to determine reaction mechanisms and fate of nutrients and environmental contaminants. How deeply one wishes to query the mechanism depends on the detail sought. Reactions that involve chemical species in more than on...

  17. Biogeochemical cycling and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.; Mouat, D. A.

    1984-01-01

    The present investigation is concerned with the role of remote sensing in the analysis of biochemical cycling. A general review is provided of the interest of NASA in biochemical cycling, taking into account an assessment of the state and dynamics of the pools and fluxes of four major elements (carbon, nitrogen, phosphorus, sulfur), an understanding of the coupling and interaction of the biosphere and the atmosphere, and an understanding of the biosphere and the oceans. Attention is given to biogeochemical cycling science issues, the potential remote sensing role, the vegetation type, aspects of vegetation structure, the leaf area index, the canopy height, functional relationships, environmental and soil variables, questions of experimental design, sampling sites and ground data, and radiometric data and analysis.

  18. A Coupled Land Surface-Subsurface Biogeochemical Model for Aqueous and Gaseous Nitrogen Losses

    NASA Astrophysics Data System (ADS)

    Gu, C.; Maggi, F.; Riley, W.; Pan, L.; Xu, T.; Oldenburg, C.; Miller, N.

    2008-12-01

    In recent years concern has grown over the contribution of nitrogen (N) fertilizers to nitrate (NOB3PB-P) water pollution and atmospheric pollution of nitrous oxide (NB2BO), nitric oxide (NO), and ammonia (NHB3B). Characterizing the amount and species of N losses is therefore essential in developing a strategy to estimate and mitigate N leaching and emission to the atmosphere. Indeed, transformations of nitrogen depend strongly on water content, soil temperature, and nitrogen concentration. Land surface processes therefore have to be taken into account to properly characterize N biogeochemical cycling. However, most current nitrogen biogeochemical models take the land surface as the upper boundary by lumping the complex processes above the surface as known boundary conditions. In this study, an extant subsurface mechanistic N cycle model (TOUGHREACT-N) was coupled with the community land model (CLM). The resulting coupled model extends the modeling capability of TOUGHREACT-N to include the important energy, momentum, and moisture dynamics provided by CLM. The coupled model showed a significant impact of land-surface diurnal forcing on soil temperature and moisture and on nitrogen fluxes. We also discuss field applications of the model and discuss how temporal dynamics of nitrogen fluxes are affected by land surface processes.

  19. Effects of Privately Owned Land Management Practices on Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Getson, J. M.; Hutyra, L.; Short, A. G.; Templer, P. H.; Kittredge, D.

    2014-12-01

    An increasing fraction of the global population lives in urban settings. Understanding how the human-natural system couple and decouple biogeochemical cycles across urbanization gradients is crucial for human health and environmental sustainability. Natural processes of nutrient deposition, export, uptake, and internal cycling can be disrupted by human activities. Residential landscape management (e.g. composting, leaf litter collection, fertilizer application) interrupts these natural biogeochemical cycles; therefore, it is key to characterize these practices and their impacts. This study looks at private land management practices along a rural to urban gradient in Boston, Massachusetts. We used a mail survey instrument coupled with biogeochemical measurements and remote sensing derived estimates of aboveground biomass to estimate biogeochemical modifications associated with residential landscape management practices. We find parcel size influences management behavior, management practices differ for leaf litter and lawn clippings, and fertilizer application is unrelated to parcel size or degree of urban-ness. These management practices result in nutrient redistribution that differs with residential characteristics.

  20. Generalizability of Gottman and Colleagues' Affective Process Models Of Couples' Relationship Outcomes

    ERIC Educational Resources Information Center

    Kim, Hyoun K.; Capaldi, Deborah M.; Crosby, Lynn

    2007-01-01

    The generalizability of the affective process models of J. M. Gottman et al. (1998) was examined using a community-based sample of 85 married or cohabiting couples with at-risk backgrounds. Predictive associations between affective processes assessed at about age 21 years and relationship status and satisfaction assessed approximately 2.5 years…

  1. Biogeochemical controls of uranium bioavailability from the dissolved phase

    USGS Publications Warehouse

    Croteau, Marie-Noele; Fuller, Christopher C.; Cain, Daniel J.; Campbell, Kate M.; Aiken, George R.

    2016-01-01

    To gain insights into the risks associated with uranium (U) mining and processing, we investigated the biogeochemical controls of U bioavailability in the model freshwater speciesLymnaea stagnalis (Gastropoda). Bioavailability of dissolved U(VI) was characterized in controlled laboratory experiments over a range of water hardness, pH, and in the presence of complexing ligands in the form of dissolved natural organic matter (DOM). Results show that dissolved U is bioavailable under all the geochemical conditions tested. Uranium uptake rates follow first order kinetics over a range encompassing most environmental concentrations. Uranium uptake rates in L. stagnalis ultimately demonstrate saturation uptake kinetics when exposure concentrations exceed 100 nM, suggesting uptake via a finite number of carriers or ion channels. The lack of a relationship between U uptake rate constants and Ca uptake rates suggest that U does not exclusively use Ca membrane transporters. In general, U bioavailability decreases with increasing pH, increasing Ca and Mg concentrations, and when DOM is present. Competing ions did not affect U uptake rates. Speciation modeling that includes formation constants for U ternary complexes reveals that the aqueous concentration of dicarbonato U species (UO2(CO3)2–2) best predicts U bioavailability to L. stagnalis, challenging the free-ion activity model postulate

  2. Understanding Biogeochemical Transformations Of Trace Elements In Multi Metal-Rich Geomaterials Under Stimulated Redox Conditions

    EPA Science Inventory

    Natural and anthropogenic influences on hydrological conditions can induce periodic or long-term reduced conditions in geologic materials. Such conditions can cause significant impacts on biogeochemical processes of trace elements in subsurface or near surface environments. The...

  3. 76 FR 30509 - Court Orders and Legal Processes Affecting Thrift Savings Plan Accounts

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-26

    ... Part 1653 Court Orders and Legal Processes Affecting Thrift Savings Plan Accounts AGENCY: Federal... finalize the process by which TSP accounts may be garnished efficiently--consistent with law and regulation... is trying to process more than 7,000 child support orders. If the Agency processes these orders...

  4. Ocean fronts drive marine fishery production and biogeochemical cycling.

    PubMed

    Woodson, C Brock; Litvin, Steven Y

    2015-02-10

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy-sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom-up vs. top-down regulation and high productivity in marine ecosystems. PMID:25624488

  5. Ocean fronts drive marine fishery production and biogeochemical cycling

    PubMed Central

    Woodson, C. Brock; Litvin, Steven Y.

    2015-01-01

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy–sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom–up vs. top–down regulation and high productivity in marine ecosystems. PMID:25624488

  6. Ocean fronts drive marine fishery production and biogeochemical cycling.

    PubMed

    Woodson, C Brock; Litvin, Steven Y

    2015-02-10

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy-sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom-up vs. top-down regulation and high productivity in marine ecosystems.

  7. Effects of bark beetle-caused tree mortality on biogeochemical and biogeophysical MODIS products

    NASA Astrophysics Data System (ADS)

    Bright, Benjamin C.; Hicke, Jeffrey A.; Meddens, Arjan J. H.

    2013-07-01

    affect forest-atmosphere exchanges of carbon, water, and energy, thereby influencing weather and climate. Bark beetle outbreaks are one such disturbance type that alters biogeochemical and biogeophysical processes in forests. Few studies have documented bark beetle impacts to leaf area index (LAI), gross primary productivity (GPP), evapotranspiration (ET), land surface temperature (LST), and surface albedo with satellite observations. Our objective was to use Landsat-derived estimates of bark beetle-caused tree mortality and Moderate Resolution Imaging Spectroradiometer (MODIS) land surface products to estimate beetle-caused changes in LAI, GPP, ET, LST, and surface albedo in northern Colorado. Following bark beetle-caused tree mortality, decreases occurred in LAI (0.02-0.80 m2m-2, 1-40%), annual GPP (50-248 gC m-2 yr-1, (5-26%), and daily summer ET (0.20-0.70 mm day-1, 13-44%), whereas increases occurred in August LST (1-3.9 K) and February albedo (0.03-0.09, 19-52%). We found greater responses of these variables in areas of greater mortality severity. The extent and severity of tree mortality in northern Colorado caused substantial changes in land surface variables (9-23%) when averaged across all forested areas of our study area. Our results demonstrate that land surface variables are sensitive to bark beetle-caused tree mortality and that bark beetle outbreaks can significantly impact biogeochemical and biogeophysical processes.

  8. Benthic exchange and biogeochemical cycling in permeable sediments.

    PubMed

    Huettel, Markus; Berg, Peter; Kostka, Joel E

    2014-01-01

    The sandy sediments that blanket the inner shelf are situated in a zone where nutrient input from land and strong mixing produce maximum primary production and tight coupling between water column and sedimentary processes. The high permeability of the shelf sands renders them susceptible to pressure gradients generated by hydrodynamic and biological forces that modulate spatial and temporal patterns of water circulation through these sediments. The resulting dynamic three-dimensional patterns of particle and solute distribution generate a broad spectrum of biogeochemical reaction zones that facilitate effective decomposition of the pelagic and benthic primary production products. The intricate coupling between the water column and sediment makes it challenging to quantify the production and decomposition processes and the resultant fluxes in permeable shelf sands. Recent technical developments have led to insights into the high biogeochemical and biological activity of these permeable sediments and their role in the global cycles of matter.

  9. Study of individual and group affective processes in the crew of a simulated mission to Mars: Positive affectivity as a valuable indicator of changes in the crew affectivity

    NASA Astrophysics Data System (ADS)

    Poláčková Šolcová, Iva; Lačev, Alek; Šolcová, Iva

    2014-07-01

    The success of a long-duration space mission depends on various technical demands as well as on the psychological (cognitive, affective, and motivational) adaptation of crewmembers and the quality of interactions within the crew. We examined the ways crewmembers of a 520-day simulated spaceflight to Mars (held in the Institute for Biomedical Problems, in Moscow) experienced and regulated their moods and emotions. Results show that crewmembers experienced predominantly positive emotions throughout their 520-day isolation and the changes in mood of the crewmembers were asynchronous and balanced. The study suggests that during the simulation, crewmembers experienced and regulated their emotions differently than they usually do in their everyday life. In isolation, crewmembers preferred to suppress and neutralize their negative emotions and express overtly only emotions with positive valence. Although the affective processes were almost invariable throughout the simulation, two periods of time when the level of positive emotions declined were identified. Regarding the findings, the paper suggests that changes in positive affectivity could be a more valuable indicator of human experience in demanding but professional environments than changes in negative affectivity. Finally, the paper discusses the phenomenology of emotions during a real space mission.

  10. A generic reaction-based biogeochemical simulator

    SciTech Connect

    Fang, Yilin; Yabusaki, Steven B.; Yeh, Gour T.; C.T. Miller, M.W. Farthing, W.G. Gray, and G.F. Pinder

    2004-06-17

    This paper presents a generic biogeochemical simulator, BIOGEOCHEM. The simulator can read a thermodynamic database based on the EQ3/EQ6 database. It can also read user-specified equilibrium and kinetic reactions (reactions not defined in the format of that in EQ3/EQ6 database) symbolically. BIOGEOCHEM is developed with a general paradigm. It overcomes the requirement in most available reaction-based models that reactions and rate laws be specified in a limited number of canonical forms. The simulator interprets the reactions, and rate laws of virtually any type for input to the MAPLE symbolic mathematical software package. MAPLE then generates Fortran code for the analytical Jacobian matrix used in the Newton-Raphson technique, which are compiled and linked into the BIOGEOCHEM executable. With this feature, the users are exempted from recoding the simulator to accept new equilibrium expressions or kinetic rate laws. Two examples are used to demonstrate the new features of the simulator.

  11. 10 years of BAWLing into affective and aesthetic processes in reading: what are the echoes?

    PubMed

    Jacobs, Arthur M; Võ, Melissa L-H; Briesemeister, Benny B; Conrad, Markus; Hofmann, Markus J; Kuchinke, Lars; Lüdtke, Jana; Braun, Mario

    2015-01-01

    Reading is not only "cold" information processing, but involves affective and aesthetic processes that go far beyond what current models of word recognition, sentence processing, or text comprehension can explain. To investigate such "hot" reading processes, standardized instruments that quantify both psycholinguistic and emotional variables at the sublexical, lexical, inter-, and supralexical levels (e.g., phonological iconicity, word valence, arousal-span, or passage suspense) are necessary. One such instrument, the Berlin Affective Word List (BAWL) has been used in over 50 published studies demonstrating effects of lexical emotional variables on all relevant processing levels (experiential, behavioral, neuronal). In this paper, we first present new data from several BAWL studies. Together, these studies examine various views on affective effects in reading arising from dimensional (e.g., valence) and discrete emotion features (e.g., happiness), or embodied cognition features like smelling. Second, we extend our investigation of the complex issue of affective word processing to words characterized by a mixture of affects. These words entail positive and negative valence, and/or features making them beautiful or ugly. Finally, we discuss tentative neurocognitive models of affective word processing in the light of the present results, raising new issues for future studies.

  12. 10 years of BAWLing into affective and aesthetic processes in reading: what are the echoes?

    PubMed Central

    Jacobs, Arthur M.; Võ, Melissa L.-H.; Briesemeister, Benny B.; Conrad, Markus; Hofmann, Markus J.; Kuchinke, Lars; Lüdtke, Jana; Braun, Mario

    2015-01-01

    Reading is not only “cold” information processing, but involves affective and aesthetic processes that go far beyond what current models of word recognition, sentence processing, or text comprehension can explain. To investigate such “hot” reading processes, standardized instruments that quantify both psycholinguistic and emotional variables at the sublexical, lexical, inter-, and supralexical levels (e.g., phonological iconicity, word valence, arousal-span, or passage suspense) are necessary. One such instrument, the Berlin Affective Word List (BAWL) has been used in over 50 published studies demonstrating effects of lexical emotional variables on all relevant processing levels (experiential, behavioral, neuronal). In this paper, we first present new data from several BAWL studies. Together, these studies examine various views on affective effects in reading arising from dimensional (e.g., valence) and discrete emotion features (e.g., happiness), or embodied cognition features like smelling. Second, we extend our investigation of the complex issue of affective word processing to words characterized by a mixture of affects. These words entail positive and negative valence, and/or features making them beautiful or ugly. Finally, we discuss tentative neurocognitive models of affective word processing in the light of the present results, raising new issues for future studies. PMID:26089808

  13. Key factors, Soil N Processes, and nitrite accumulation affecting nitrous oxide emissions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A better understanding of the key factors affecting nitrous oxide (N2O) emission and potential mitigation strategies is essential for sustainable agriculture. The objective of this study was to examine the important factors affecting N2O emissions, soil processes involved, and potential mitigation s...

  14. Searching for Judy: How Small Mysteries Affect Narrative Processes and Memory

    ERIC Educational Resources Information Center

    Love, Jessica; McKoon, Gail; Gerrig, Richard J.

    2010-01-01

    Current theories of text processing say little about how authors' narrative choices, including the introduction of small mysteries, can affect readers' narrative experiences. Gerrig, Love, and McKoon (2009) provided evidence that 1 type of small mystery--a character introduced without information linking him or her to the story--affects readers'…

  15. The Southern Ocean biogeochemical divide

    NASA Astrophysics Data System (ADS)

    Marinov, I.; Gnanadesikan, A.; Toggweiler, J. R.; Sarmiento, J. L.

    2006-06-01

    Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO2 and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO2 because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO2 balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO2 and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

  16. The Southern Ocean biogeochemical divide.

    PubMed

    Marinov, I; Gnanadesikan, A; Toggweiler, J R; Sarmiento, J L

    2006-06-22

    Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO(2) and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO(2) because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO(2) balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO(2) and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

  17. Physical, Biological, and Biogeochemical Response of a Northeastern River to a Severe Flood

    NASA Astrophysics Data System (ADS)

    Traister, E.; McDowell, B.

    2006-12-01

    With current climate models predicting an increase in extreme weather events, understanding how streams respond to flooding is becoming increasingly important. The Suncook River in Epsom, New Hampshire dramatically changed course on May 15, 2006 after ten inches of rain fell over a three day period. This avulsion created one entirely new stream reach, drastically reduced flow in a second reach, and delivered large amounts of suspended sediments to an otherwise un-impacted downstream reach. We have used this opportunity to investigate the duration and extent of physical, biological, and biogeochemical disturbance in this northeastern river. Towards this end, we have collected data from three impacted reaches (new channel, dewatered channel, and sediment laden channel downstream of the avulsion) as well as upstream reference sites. We have documented changes in water physiochemistry (including temperature, pH, conductivity, dissolved oxygen, suspended solids, DOC, DON, NH4+, PO4, total phosphorus, NO3-, Na+, K+, Ca2+, Mg2+, Cl-, SO42-), stream biota (including algae and benthic macroinvertebrates), and ecosystem processes (stream metabolism and nutrient uptake length) of the affected reaches and upstream reference sites. Preliminary results suggest that while biogeochemical disturbance becomes ameliorated almost immediately, stream biota take longer to recover.

  18. Characterizing marine particles and their impact on biogeochemical cycles in the GEOTRACES program

    NASA Astrophysics Data System (ADS)

    Anderson, Robert F.; Hayes, Christopher T.

    2015-04-01

    Trace elements and their isotopes (TEIs) are of priority interest in several subdisciplines of oceanography. For example, the vital role of trace element micronutrients in regulating the growth of marine organisms, which, in turn, may influence the structure and composition of marine ecosystems, is now well established (Morel and Price, 2003; Twining and Baines, 2013). Natural distributions of some TEIs have been severely impacted by anthropogenic emissions, leading to substantial perturbations of natural ocean inventories. Pb and Hg, for example, (Lamborg et al., 2002; Schaule and Patterson, 1981), may represent a significant threat to human food supply. Furthermore, much of our knowledge of past variability in the ocean environment, including the ocean's role in climate change, has been developed using TEI proxies archived in marine substrates such as sediments, corals and microfossils. Research in each of these areas relies on a comprehensive knowledge of the distributions of TEIs in the ocean, and on the sensitivity of these distributions to changing environmental conditions. With numerous processes affecting the regional supply and removal of TEIs in the ocean, a comprehensive understanding of the marine biogeochemical cycles of TEIs can be attained only by a global, coordinated, international effort. GEOTRACES, an international program designed to study the marine biogeochemical cycles of trace elements and their isotopes (Anderson et al., 2014; Henderson et al., 2007), aims to achieve these goals.

  19. A coupled biogeochemical-Dynamic Energy Budget model as a tool for managing fish production ponds.

    PubMed

    Serpa, Dalila; Pousão-Ferreira, Pedro; Caetano, Miguel; Cancela da Fonseca, Luís; Dinis, Maria Teresa; Duarte, Pedro

    2013-10-01

    The sustainability of semi-intensive aquaculture relies on management practices that simultaneously improve production efficiency and minimize the environmental impacts of this activity. The purpose of the present work was to develop a mathematical model that reproduced the dynamics of a semi-intensive fish earth pond, to simulate different management scenarios for optimizing fish production. The modeling approach consisted of coupling a biogeochemical model that simulated the dynamics of the elements that are more likely to affect fish production and cause undesirable environmental impacts (nitrogen, phosphorus and oxygen) to a fish growth model based on the Dynamic Energy Budget approach. The biogeochemical sub-model successfully simulated most water column and sediment variables. A good model fit was also found between predicted and observed white seabream (Diplodus sargus) growth data over a production cycle. In order to optimize fish production, different management scenarios were analysed with the model (e.g. increase stocking densities, decrease/increase water exchange rates, decrease/increase feeding rates, decrease phosphorus content in fish feeds, increase food assimilation efficiency and decrease pellets sinking velocity) to test their effects on the pond environment as well as on fish yields and effluent nutrient discharges. Scenarios were quantitatively evaluated and compared using the Analytical Hierarchical Process (AHP) methodology. The best management options that allow the maximization of fish production while maintaining a good pond environment and minimum impacts on the adjacent coastal system were to double standard stocking densities and to improve food assimilation efficiency.

  20. The Microbial Engines That Drive Earth’s Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Falkowski, Paul G.; Fenchel, Tom; Delong, Edward F.

    2008-05-01

    Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet’s history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

  1. The microbial engines that drive Earth's biogeochemical cycles.

    PubMed

    Falkowski, Paul G; Fenchel, Tom; Delong, Edward F

    2008-05-23

    Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet's history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

  2. The Impact of Affect on Out-Group Judgments Depends on Dominant Information-Processing Styles: Evidence From Incidental and Integral Affect Paradigms.

    PubMed

    Isbell, Linda M; Lair, Elicia C; Rovenpor, Daniel R

    2016-04-01

    Two studies tested the affect-as-cognitive-feedback model, in which positive and negative affective states are not uniquely associated with particular processing styles, but rather serve as feedback about currently accessible processing styles. The studies extend existing work by investigating (a) both incidental and integral affect, (b) out-group judgments, and (c) downstream consequences. We manipulated processing styles and either incidental (Study 1) or integral (Study 2) affect and measured perceptions of out-group homogeneity. Positive (relative to negative) affect increased out-group homogeneity judgments when global processing was primed, but under local priming, the effect reversed (Studies 1 and 2). A similar interactive effect emerged on attributions, which had downstream consequences for behavioral intentions (Study 2). These results demonstrate that both incidental and integral affect do not directly produce specific processing styles, but rather influence thinking by providing feedback about currently accessible processing styles. PMID:26984013

  3. Information-Processing and Perceptions of Control: How Attribution Style Affects Task-Relevant Processing

    ERIC Educational Resources Information Center

    Yeigh, Tony

    2007-01-01

    This study investigated the effects of perceived controllability on information processing within Weiner's (1985, 1986) attributional model of learning. Attributional style was used to identify trait patterns of controllability for 37 university students. Task-relevant feedback on an information-processing task was then manipulated to test for…

  4. The “Musical Emotional Bursts”: a validated set of musical affect bursts to investigate auditory affective processing

    PubMed Central

    Paquette, Sébastien; Peretz, Isabelle; Belin, Pascal

    2013-01-01

    The Musical Emotional Bursts (MEB) consist of 80 brief musical executions expressing basic emotional states (happiness, sadness and fear) and neutrality. These musical bursts were designed to be the musical analog of the Montreal Affective Voices (MAV)—a set of brief non-verbal affective vocalizations portraying different basic emotions. The MEB consist of short (mean duration: 1.6 s) improvisations on a given emotion or of imitations of a given MAV stimulus, played on a violin (10 stimuli × 4 [3 emotions + neutral]), or a clarinet (10 stimuli × 4 [3 emotions + neutral]). The MEB arguably represent a primitive form of music emotional expression, just like the MAV represent a primitive form of vocal, non-linguistic emotional expression. To create the MEB, stimuli were recorded from 10 violinists and 10 clarinetists, and then evaluated by 60 participants. Participants evaluated 240 stimuli [30 stimuli × 4 (3 emotions + neutral) × 2 instruments] by performing either a forced-choice emotion categorization task, a valence rating task or an arousal rating task (20 subjects per task); 40 MAVs were also used in the same session with similar task instructions. Recognition accuracy of emotional categories expressed by the MEB (n:80) was lower than for the MAVs but still very high with an average percent correct recognition score of 80.4%. Highest recognition accuracies were obtained for happy clarinet (92.0%) and fearful or sad violin (88.0% each) MEB stimuli. The MEB can be used to compare the cerebral processing of emotional expressions in music and vocal communication, or used for testing affective perception in patients with communication problems. PMID:23964255

  5. Possible biogeochemical consequences of ocean fertilization

    SciTech Connect

    Fuhrman, J.A. ); Capone, D.G. )

    1991-12-01

    The authors consider biogeochemical secondary effects that could arise from an increase in ocean productivity, such as may occur via fertilization with Fe. These processes and feedback loops are infrequently discussed in this context, yet are likely to be highly relevant to the understanding of global change in general. In particular, the authors suggest that increased productivity may increase the production and efflux of greenhouse gases, such as nitrous oxide (N{sub 2}O) and methane (CH{sub 4}) and that shifts in phytoplankton species and productivity may cause changes in another climate-related gas, dimethylsulfide (DMS). N{sub 2}O is also implicated in the destruction of stratospheric ozone. Factors contributing to amplified release include both increased nutrient cycling in general and possible development of low oxygen conditions from fertilization. It is also remotely possible that reduced oxygen from an initial fertilization could mobilize existing Fe pools, inducing uncontrolled self-fertilization. Although lack of relevant physiological and ecological data makes it difficult to provide quantitative limits on the extent of the undesired effects, rough calculations suggest that the enhanced release of N{sub 2}O alone could totally negate any potential benefit from fertilization and likely worsen global warming and ozone depletion.

  6. How Does Tele-Mental Health Affect Group Therapy Process? Secondary Analysis of a Noninferiority Trial

    ERIC Educational Resources Information Center

    Greene, Carolyn J.; Morland, Leslie A.; Macdonald, Alexandra; Frueh, B. Christopher; Grubbs, Kathleen M.; Rosen, Craig S.

    2010-01-01

    Objective: Video teleconferencing (VTC) is used for mental health treatment delivery to geographically remote, underserved populations. However, few studies have examined how VTC affects individual or group psychotherapy processes. This study compares process variables such as therapeutic alliance and attrition among participants receiving anger…

  7. Ecological and Dynamical Study of the Creative Process and Affects of Scientific Students Working in Groups

    ERIC Educational Resources Information Center

    Peilloux, Aurélien; Botella, Marion

    2016-01-01

    Although creativity has drawn the attention of researchers during the past century, collaborative processes have barely been investigated. In this article, the collective dimension of a creative process is investigated, based on a dynamic and ecological approach that includes an affective component. "Dynamic" means that the creative…

  8. The Mechanism of Valence-Space Metaphors: ERP Evidence for Affective Word Processing

    PubMed Central

    Xie, Jiushu; Wang, Ruiming; Chang, Song

    2014-01-01

    Embodied cognition contends that the representation and processing of concepts involve perceptual, somatosensory, motoric, and other physical re-experiencing information. In this view, affective concepts are also grounded in physical information. For instance, people often say “feeling down” or “cheer up” in daily life. These phrases use spatial information to understand affective concepts. This process is referred to as valence-space metaphor. Valence-space metaphors refer to the employment of spatial information (lower/higher space) to elaborate affective concepts (negative/positive concepts). Previous studies have demonstrated that processing affective words affects performance on a spatial detection task. However, the mechanism(s) behind this effect remain unclear. In the current study, we hypothesized that processing affective words might produce spatial information. Consequently, spatial information would affect the following spatial cue detection/discrimination task. In Experiment 1, participants were asked to remember an affective word. Then, they completed a spatial cue detection task while event-related potentials were recorded. The results indicated that the top cues induced enhanced amplitude of P200 component while participants kept positive words relative to negative words in mind. On the contrary, the bottom cues induced enhanced P200 amplitudes while participants kept negative words relative to positive words in mind. In Experiment 2, we conducted a behavioral experiment that employed a similar paradigm to Experiment 1, but used arrows instead of dots to test the attentional nature of the valence-space metaphor. We found a similar facilitation effect as found in Experiment 1. Positive words facilitated the discrimination of upper arrows, whereas negative words facilitated the discrimination of lower arrows. In summary, affective words might activate spatial information and cause participants to allocate their attention to corresponding

  9. The mechanism of valence-space metaphors: ERP evidence for affective word processing.

    PubMed

    Xie, Jiushu; Wang, Ruiming; Chang, Song

    2014-01-01

    Embodied cognition contends that the representation and processing of concepts involve perceptual, somatosensory, motoric, and other physical re-experiencing information. In this view, affective concepts are also grounded in physical information. For instance, people often say "feeling down" or "cheer up" in daily life. These phrases use spatial information to understand affective concepts. This process is referred to as valence-space metaphor. Valence-space metaphors refer to the employment of spatial information (lower/higher space) to elaborate affective concepts (negative/positive concepts). Previous studies have demonstrated that processing affective words affects performance on a spatial detection task. However, the mechanism(s) behind this effect remain unclear. In the current study, we hypothesized that processing affective words might produce spatial information. Consequently, spatial information would affect the following spatial cue detection/discrimination task. In Experiment 1, participants were asked to remember an affective word. Then, they completed a spatial cue detection task while event-related potentials were recorded. The results indicated that the top cues induced enhanced amplitude of P200 component while participants kept positive words relative to negative words in mind. On the contrary, the bottom cues induced enhanced P200 amplitudes while participants kept negative words relative to positive words in mind. In Experiment 2, we conducted a behavioral experiment that employed a similar paradigm to Experiment 1, but used arrows instead of dots to test the attentional nature of the valence-space metaphor. We found a similar facilitation effect as found in Experiment 1. Positive words facilitated the discrimination of upper arrows, whereas negative words facilitated the discrimination of lower arrows. In summary, affective words might activate spatial information and cause participants to allocate their attention to corresponding locations

  10. Simulation of land-atmosphere gaseous exchange using a coupled land surface-biogeochemical model

    NASA Astrophysics Data System (ADS)

    Gu, C.; Riley, W. J.; Perez, T. J.; Pan, L.

    2009-12-01

    It is important to develop and evaluate biogeochemical models that on the one hand represent vegetation and soil dynamics and on the other hand provide energy and water fluxes in a temporal resolution suitable for biogeochemical processes. In this study, we present a consistent coupling between a common land surface model (CLM3.0) and a recently developed biogeochemical model (TOUGHREACT-N). The model TOUGHREACT-N (TR-N) is one of the few process-based models that simulate green house gases fluxes by using an implicit scheme to solve the diffusion equations governing soil heat and water fluxes. By coupling with CLM3.0, we have significantly improved TR-N by including realistic representations of surface water, energy, and momentum exchanges, through the use of improved formulations for soil evaporation, plant transpiration, vegetation growth, and plant nitrogen uptake embedded in CLM3.0. The coupled CLMTR-N model is a first step for a full coupling of land surface and biogeochemical processes. The model is evaluated with measurements of soil temperature, soil water content, and N2O and N2 gaseous emission data from fallow, corn, and forest sites in Venezuela. The results demonstrate that the CLMTR-N model simulates realistic diurnal variation of soil temperature, soil water content, and N gaseous fluxes. For example, mean differences between predicted and observed midday near-surface soil water content were 8, 11, and 4 % in July, August, and September. The sensitivity of the biogeochemical processes and resulting N emissions to variation in environmental drivers is high, which indicates the need to calculate biogeochemical processes in, at least, two hourly time steps using dynamically updated (rather than daily averaged) soil environmental conditions. The development in CLMTR-N of such a complex representation of processes will allow us to characterize relevant processes and simplifications appropriate for regional to global-scale coupled biogeochemical and

  11. Biogeochemical Cycles of Carbon and Sulfur on Early Earth (and on Mars?)

    NASA Technical Reports Server (NTRS)

    DesMarais, D. J.

    2004-01-01

    The physical and chemical interactions between the atmosphere, hydrosphere, geosphere and biosphere can be examined for elements such as carbon (C) and sulfur (S) that have played central roles for both life and the environment. The compounds of C are highly important, not only as organic matter, but also as atmospheric greenhouse gases, pH buffers in seawater, oxidation-reduction buffers virtually everywhere, and key magmatic constituents affecting plutonism and volcanism. S assumes important roles as an oxidation-reduction partner with C and Fe in biological systems, as a key constituent in magmas and volcanic gases, and as a major influence upon pH in certain environments. These multiple roles of C and S interact across a network of elemental reservoirs interconnected by physical, chemical and biological processes. These networks are termed biogeochemical C and S cycles.

  12. Multi-scale interactions affecting transport, storage, and processing of solutes and sediments in stream corridors (Invited)

    NASA Astrophysics Data System (ADS)

    Harvey, J. W.; Packman, A. I.

    2010-12-01

    Surface water and groundwater flow interact with the channel geomorphology and sediments in ways that determine how material is transported, stored, and transformed in stream corridors. Solute and sediment transport affect important ecological processes such as carbon and nutrient dynamics and stream metabolism, processes that are fundamental to stream health and function. Many individual mechanisms of transport and storage of solute and sediment have been studied, including surface water exchange between the main channel and side pools, hyporheic flow through shallow and deep subsurface flow paths, and sediment transport during both baseflow and floods. A significant challenge arises from non-linear and scale-dependent transport resulting from natural, fractal fluvial topography and associated broad, multi-scale hydrologic interactions. Connections between processes and linkages across scales are not well understood, imposing significant limitations on system predictability. The whole-stream tracer experimental approach is popular because of the spatial averaging of heterogeneous processes; however the tracer results, implemented alone and analyzed using typical models, cannot usually predict transport beyond the very specific conditions of the experiment. Furthermore, the results of whole stream tracer experiments tend to be biased due to unavoidable limitations associated with sampling frequency, measurement sensitivity, and experiment duration. We recommend that whole-stream tracer additions be augmented with hydraulic and topographic measurements and also with additional tracer measurements made directly in storage zones. We present examples of measurements that encompass interactions across spatial and temporal scales and models that are transferable to a wide range of flow and geomorphic conditions. These results show how the competitive effects between the different forces driving hyporheic flow, operating at different spatial scales, creates a situation

  13. Interactive Effects of Urban Land Use and Climate Change on Biogeochemical Cycles (Invited)

    NASA Astrophysics Data System (ADS)

    Pouyat, R. V.

    2009-12-01

    Urban land-use change can affect biogeochemical cycles through altered disturbance regimes, landscape management practices (e.g., irrigation and fertilization), built structures, and altered environments (heat island effect, pollution, introduction of non-native species, loss of native species). As a result, the conversion of native to urban ecological systems has been shown to significantly affect carbon, nitrogen, and water cycles at local, regional, and global scales. These changes have created novel habitats and ecosystems, which have no analogue in the history of life. Nonetheless, some of the environmental changes occurring in urban areas are analogous to the changes expected in climate by the end of the century, e.g. atmospheric increase in CO2 and an increase in air temperatures, which can be utilized as a “natural experiment” to investigate global change effects on large scale ecosystem processes. Moreover, as analogues of expected future environments, urban ecological systems may act as reservoirs of plant and animal species for adjoining landscapes that are expected to undergo relatively rapid climate changes in the next 100 years. Urban land-use change by itself may contribute to changes in regional weather patterns and long-term changes in global climate, which will depend on the net effect of converting native systems to urban systems and the comparison of per capita “footprints” between urban, suburban, and rural inhabitants. My objectives are to 1) assess the impact of changes in urban land-use on climate change and in turn how climate change may affect urban biogeochemical cycles and 2) discuss the potential for urban ecosystems to mitigate green house gas emissions.

  14. On whether mirror neurons play a significant role in processing affective prosody.

    PubMed

    Ramachandra, Vijayachandra

    2009-02-01

    Several behavioral and neuroimaging studies have indicated that both right and left cortical structures and a few subcortical ones are involved in processing affective prosody. Recent investigations have shown that the mirror neuron system plays a crucial role in several higher-level functions such as empathy, theory of mind, language, etc., but no studies so far link the mirror neuron system with affective prosody. In this paper is a speculation that the mirror neuron system, which serves as a common neural substrate for different higher-level functions, may play a significant role in processing affective prosody via its connections with the limbic lobe. Actual research must apply electrophysiological and neuroimaging techniques to assess whether the mirror neuron systems underly affective prosody in humans.

  15. Biogeochemical cycling in terrestrial ecosystems of the Caatinga Biome.

    PubMed

    Menezes, R S C; Sampaio, E V S B; Giongo, V; Pérez-Marin, A M

    2012-08-01

    The biogeochemical cycles of C, N, P and water, the impacts of land use in the stocks and flows of these elements and how they can affect the structure and functioning of Caatinga were reviewed. About half of this biome is still covered by native secondary vegetation. Soils are deficient in nutrients, especially N and P. Average concentrations of total soil P and C in the top layer (0-20 cm) are 196 mg kg(-1) and 9.3 g kg(-1), corresponding to C stocks around 23 Mg ha(-1). Aboveground biomass of native vegetation varies from 30 to 50 Mg ha(-1), and average root biomass from 3 to 12 Mg ha(-1). Average annual productivities and biomass accumulation in different land use systems vary from 1 to 7 Mg ha(-1) year(-1). Biological atmospheric N2 fixation is estimated to vary from 3 to 11 kg N ha(-1) year-1 and 21 to 26 kg N ha(-1) year(-1) in mature and secondary Caatinga, respectively. The main processes responsible for nutrient and water losses are fire, soil erosion, runoff and harvest of crops and animal products. Projected climate changes in the future point to higher temperatures and rainfall decreases. In face of the high intrinsic variability, actions to increase sustainability should improve resilience and stability of the ecosystems. Land use systems based on perennial species, as opposed to annual species, may be more stable and resilient, thus more adequate to face future potential increases in climate variability. Long-term studies to investigate the potential of the native biodiversity or adapted exotic species to design sustainable land use systems should be encouraged.

  16. Extreme sensory processing patterns and their relation with clinical conditions among individuals with major affective disorders.

    PubMed

    Engel-Yeger, Batya; Muzio, Caterina; Rinosi, Giorgio; Solano, Paola; Geoffroy, Pierre Alexis; Pompili, Maurizio; Amore, Mario; Serafini, Gianluca

    2016-02-28

    Previous studies highlighted the involvement of sensory perception in emotional processes. However, the role of extreme sensory processing patterns expressed in hyper- or hyposensitivity was not thoroughly considered. The present study, in real life conditions, examined the unique sensory processing patterns of individuals with major affective disorders and their relationship with psychiatric symptomatology. The sample consisted of 105 participants with major affective conditions ranging in age from 20 to 84 years (mean=56.7±14.6). All participants completed the Temperament Evaluation of Memphis, Pisa, Paris and San Diego (TEMPS-A), the second version of the Beck Depression Inventory (BDI-II), and Adolescent/Adult Sensory Profile (AASP). Sensory sensitivity/avoiding hypersensitivity patterns and low registration (a hyposensitivity pattern) were prevalent among our sample as compared to normative data. About seventy percent of the sample showed lower seeking tendency. Stepwise regression analyses revealed that depression and anxious/cyclothymic affective temperaments were predicted by sensory sensory/avoiding. Anxious and irritable affective temperaments were predicted by low registration. Hyperthymic affective temperament and lower severity of depression were predicted by sensation seeking. Hyposensitivity or hypersensitivity may be "trait" markers of individuals with major affective disorders. Interventions should refer to the individual unique sensory profiles and their behavioral and functional impact in the context of real life.

  17. Affective priming effects of musical sounds on the processing of word meaning.

    PubMed

    Steinbeis, Nikolaus; Koelsch, Stefan

    2011-03-01

    Recent studies have shown that music is capable of conveying semantically meaningful concepts. Several questions have subsequently arisen particularly with regard to the precise mechanisms underlying the communication of musical meaning as well as the role of specific musical features. The present article reports three studies investigating the role of affect expressed by various musical features in priming subsequent word processing at the semantic level. By means of an affective priming paradigm, it was shown that both musically trained and untrained participants evaluated emotional words congruous to the affect expressed by a preceding chord faster than words incongruous to the preceding chord. This behavioral effect was accompanied by an N400, an ERP typically linked with semantic processing, which was specifically modulated by the (mis)match between the prime and the target. This finding was shown for the musical parameter of consonance/dissonance (Experiment 1) and then extended to mode (major/minor) (Experiment 2) and timbre (Experiment 3). Seeing that the N400 is taken to reflect the processing of meaning, the present findings suggest that the emotional expression of single musical features is understood by listeners as such and is probably processed on a level akin to other affective communications (i.e., prosody or vocalizations) because it interferes with subsequent semantic processing. There were no group differences, suggesting that musical expertise does not have an influence on the processing of emotional expression in music and its semantic connotations.

  18. No effect of inversion on attentional and affective processing of facial expressions.

    PubMed

    Lipp, Ottmar V; Price, Sarah M; Tellegen, Cassandra L

    2009-04-01

    The decrease in recognition performance after face inversion has been taken to suggest that faces are processed holistically. Three experiments, 1 with schematic and 2 with photographic faces, were conducted to assess whether face inversion also affected visual search for and implicit evaluation of facial expressions of emotion. The 3 visual search experiments yielded the same differences in detection speed between different facial expressions of emotion for upright and inverted faces. Threat superiority effects, faster detection of angry than of happy faces among neutral background faces, were evident in 2 experiments. Face inversion did not affect explicit or implicit evaluation of face stimuli as assessed with verbal ratings and affective priming. Happy faces were evaluated as more positive than angry, sad, or fearful/scheming ones regardless of orientation. Taken together these results seem to suggest that the processing of facial expressions of emotion is not impaired if holistic processing is disrupted.

  19. Intuitive (in)coherence judgments are guided by processing fluency, mood and affect.

    PubMed

    Sweklej, Joanna; Balas, Robert; Pochwatko, Grzegorz; Godlewska, Małgorzata

    2014-01-01

    Recently proposed accounts of intuitive judgments of semantic coherence assume that processing fluency results in a positive affective response leading to successful assessment of semantic coherence. The present paper investigates whether processing fluency may indicate semantic incoherence as well. In two studies, we employ a new paradigm in which participants have to detect an incoherent item among semantically coherent words. In Study 1, we show participants accurately indicating an incoherent item despite not being able to provide an accurate solution to coherent words. Further, this effect is modified by affective valence of solution words that are not retrieved from memory. Study 2 replicates those results and extend them by showing that mood moderates incoherence judgments independently of affective valence of solutions. The results support processing fluency account of intuitive semantic coherence judgments and show that it is not fluency per se but fluency variations that drive judgments.

  20. Micro-topography creates biogeochemical hot spots in wetlands

    NASA Astrophysics Data System (ADS)

    Bhattacharya, Atreyee

    2012-10-01

    Interventions in wetlands could improve water quality, as wetlands regulate not only nutrients such as nitrogen and sulfur but also pollutants in the waters that flow through them. Biological and chemical processes maintain conditions for redox reactions in the wetlands that control the concentration of certain solutes, including nutrients and pollutants. But such biogeochemical processes are not evenly distributed and often are localized in “hot spots” or take place in bouts known as “hot moments.” How these hot spots or hot moments arise remains poorly understood and is often explained by simply evoking variations in soil properties in the wetlands.

  1. Affective processing of loved familiar faces: integrating central and peripheral electrophysiological measures.

    PubMed

    Guerra, Pedro; Vico, Cynthia; Campagnoli, Rafaela; Sánchez, Alicia; Anllo-Vento, Lourdes; Vila, Jaime

    2012-07-01

    A major problem in the electrophysiological studies of emotional processing linked to recognition of familiar faces is the unambiguous differentiation of effects due to emotional valence, arousal, and familiarity. The present paper summarizes a set of three studies aimed at investigating the affective processing of loved familiar faces using Lang's picture-viewing paradigm, with a special emphasis on teasing apart the individual contributions of affective valence, undifferentiated emotional arousal, and familiarity The results of the three studies support the conclusion that viewing the faces of familiar loved ones elicits an intense positive emotional reaction that cannot be explained either by familiarity or arousal alone. PMID:21689694

  2. Biogeochemical interactions affecting hepatic trace element levels in aquatic birds

    SciTech Connect

    Moeller, G.

    1996-07-01

    Knowledge of elemental interactions is important to the toxicological assessment of wildlife in the geochemical environment. This study determines the concentrations of Al, As, B, Ba, Be, Cd, Cr, Cu, Fe, Pb, Li, Mg, Mn, Hg, Mo, Ni, Se, Ag, V, and Zn in aquatic bird liver, fish liver, whole bivalves, insects, and waters in several aquatic ecosystems in northern California. There is evidence of strong in vivo and environmental interactions, including the observation of manganese as a possible cofactor or indicator in selenium bioaccumulation. The nearest neighbor selenium correlation in aquatic bird liver tissue that results from this work is Cd-Mn-Se-Hg-As. The correlation of liver selenium to manganese in vivo and the result that the majority of the variance in liver selenium concentration is contained in the manganese term of the regression model relating Se to Cd, Mn, and Hg is new knowledge in the study of aquatic birds. A linear relationship between liver selenium and environmental manganese (water and sediment) is found in the data, suggesting a water chemistry compartmentalization or activation of toxicants. Alternatively, the hepatic concentrations of selenium, manganese, and iron suggest induction of enzymes in response to oxidative stress.

  3. Managing biogeochemical cycles to reduce greenhouse gases

    SciTech Connect

    Post, Wilfred M; Venterea, Rodney

    2012-01-01

    This special issue focuses on terrestrial biogeochemical cycles as they relate to North America-wide budgeting and future projection of biogenic greenhouse gases (GHGs). Understanding the current magnitude and providing guidance on the future trajectories of atmospheric concentrations of these gases requires investigation of their (i) biogeochemical origins, (ii) response to climate feedbacks and other environmental factors, and (iii) susceptibility to management practices. This special issue provides a group of articles that present the current state of continental scale sources and sinks of biogenic GHGs and the potential to better manage them in the future.

  4. Low spatial frequency filtering modulates early brain processing of affective complex pictures.

    PubMed

    Alorda, Catalina; Serrano-Pedraza, Ignacio; Campos-Bueno, J Javier; Sierra-Vázquez, Vicente; Montoya, Pedro

    2007-11-01

    Recent research on affective processing has suggested that low spatial frequency information of fearful faces provide rapid emotional cues to the amygdala, whereas high spatial frequencies convey fine-grained information to the fusiform gyrus, regardless of emotional expression. In the present experiment, we examined the effects of low (LSF, <15 cycles/image width) and high spatial frequency filtering (HSF, >25 cycles/image width) on brain processing of complex pictures depicting pleasant, unpleasant, and neutral scenes. Event-related potentials (ERP), percentage of recognized stimuli and response times were recorded in 19 healthy volunteers. Behavioral results indicated faster reaction times in response to unpleasant LSF than to unpleasant HSF pictures. Unpleasant LSF pictures and pleasant unfiltered pictures also elicited significant enhancements of P1 amplitudes at occipital electrodes as compared to neutral LSF and unfiltered pictures, respectively; whereas no significant effects of affective modulation were found for HSF pictures. Moreover, mean ERP amplitudes in the time between 200 and 500ms post-stimulus were significantly greater for affective (pleasant and unpleasant) than for neutral unfiltered pictures; whereas no significant affective modulation was found for HSF or LSF pictures at those latencies. The fact that affective LSF pictures elicited an enhancement of brain responses at early, but not at later latencies, suggests the existence of a rapid and preattentive neural mechanism for the processing of motivationally relevant stimuli, which could be driven by LSF cues. Our findings confirm thus previous results showing differences on brain processing of affective LSF and HSF faces, and extend these results to more complex and social affective pictures.

  5. Early visual processing deficits in patients with schizophrenia during spatial frequency-dependent facial affect processing.

    PubMed

    Kim, Do-Won; Shim, Miseon; Song, Myeong Ju; Im, Chang-Hwan; Lee, Seung-Hwan

    2015-02-01

    Abnormal facial emotion recognition is considered as one of the key symptoms of schizophrenia. Only few studies have considered deficits in the spatial frequency (SF)-dependent visual pathway leading to abnormal facial emotion recognition in schizophrenia. Twenty-one patients with schizophrenia and 19 matched healthy controls (HC) were recruited for this study. Event-related potentials (ERP) were measured during presentation of SF-modulated face stimuli and their source imaging was analyzed. The patients showed reduced P100 amplitude for low-spatial frequency (LSF) pictures of fearful faces compared with the HC group. The P100 amplitude for high-spatial frequency (HSF) pictures of neutral faces was increased in the schizophrenia group, but not in the HC group. The neural source activities of the LSF fearful faces and HSF neutral faces led to hypo- and hyperactivation of the frontal lobe of subjects from the schizophrenia group and HC group, respectively. In addition, patients with schizophrenia showed enhanced N170 activation in the right hemisphere in the LSF condition, while the HC group did not. Our results suggest that deficits in the LSF-dependent visual pathway, which involves magnocellular neurons, impair early visual processing leading to dysfunctional facial emotion recognition in schizophrenia. Moreover, it suggests impaired bottom-up processing rather than top-down dysfunction for facial emotion recognition in these patients.

  6. MODELING COUPLED HYDROLOGICAL AND CHEMICAL PROCESSES: LONG-TERM URANIUM TRANSPORT FOLLOWING PHOSPHOROUS-FERTILIZATION

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Contaminants in the vadose zone are affected by the physical processes of water flow, heat movement and multicomponent transport, as well as generally by a range of interacting biogeochemical processes. Coupling these various processes within one integrated numerical simulator provides a process-ba...

  7. 40 CFR 63.1037 - Alternative means of emission limitation: Enclosed-vented process units or affected facilities.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... negative pressure at all times while the process unit or affected facility is in operation to ensure that... limitation: Enclosed-vented process units or affected facilities. 63.1037 Section 63.1037 Protection of...-vented process units or affected facilities. (a) Use of closed vent system and control device....

  8. The sound of emotions-Towards a unifying neural network perspective of affective sound processing.

    PubMed

    Frühholz, Sascha; Trost, Wiebke; Kotz, Sonja A

    2016-09-01

    Affective sounds are an integral part of the natural and social environment that shape and influence behavior across a multitude of species. In human primates, these affective sounds span a repertoire of environmental and human sounds when we vocalize or produce music. In terms of neural processing, cortical and subcortical brain areas constitute a distributed network that supports our listening experience to these affective sounds. Taking an exhaustive cross-domain view, we accordingly suggest a common neural network that facilitates the decoding of the emotional meaning from a wide source of sounds rather than a traditional view that postulates distinct neural systems for specific affective sound types. This new integrative neural network view unifies the decoding of affective valence in sounds, and ascribes differential as well as complementary functional roles to specific nodes within a common neural network. It also highlights the importance of an extended brain network beyond the central limbic and auditory brain systems engaged in the processing of affective sounds.

  9. The sound of emotions-Towards a unifying neural network perspective of affective sound processing.

    PubMed

    Frühholz, Sascha; Trost, Wiebke; Kotz, Sonja A

    2016-09-01

    Affective sounds are an integral part of the natural and social environment that shape and influence behavior across a multitude of species. In human primates, these affective sounds span a repertoire of environmental and human sounds when we vocalize or produce music. In terms of neural processing, cortical and subcortical brain areas constitute a distributed network that supports our listening experience to these affective sounds. Taking an exhaustive cross-domain view, we accordingly suggest a common neural network that facilitates the decoding of the emotional meaning from a wide source of sounds rather than a traditional view that postulates distinct neural systems for specific affective sound types. This new integrative neural network view unifies the decoding of affective valence in sounds, and ascribes differential as well as complementary functional roles to specific nodes within a common neural network. It also highlights the importance of an extended brain network beyond the central limbic and auditory brain systems engaged in the processing of affective sounds. PMID:27189782

  10. Interactive effects of solar UV radiation and climate change on biogeochemical cycling.

    PubMed

    Zepp, R G; Erickson, D J; Paul, N D; Sulzberger, B

    2007-03-01

    This report assesses research on the interactions of UV radiation (280-400 nm) and global climate change with global biogeochemical cycles at the Earth's surface. The effects of UV-B (280-315 nm), which are dependent on the stratospheric ozone layer, on biogeochemical cycles are often linked to concurrent exposure to UV-A radiation (315-400 nm), which is influenced by global climate change. These interactions involving UV radiation (the combination of UV-B and UV-A) are central to the prediction and evaluation of future Earth environmental conditions. There is increasing evidence that elevated UV-B radiation has significant effects on the terrestrial biosphere with implications for the cycling of carbon, nitrogen and other elements. The cycling of carbon and inorganic nutrients such as nitrogen can be affected by UV-B-mediated changes in communities of soil organisms, probably due to the effects of UV-B radiation on plant root exudation and/or the chemistry of dead plant material falling to the soil. In arid environments direct photodegradation can play a major role in the decay of plant litter, and UV-B radiation is responsible for a significant part of this photodegradation. UV-B radiation strongly influences aquatic carbon, nitrogen, sulfur and metals cycling that affect a wide range of life processes. UV-B radiation changes the biological availability of dissolved organic matter to microorganisms, and accelerates its transformation into dissolved inorganic carbon and nitrogen, including carbon dioxide and ammonium. The coloured part of dissolved organic matter (CDOM) controls the penetration of UV radiation into water bodies, but CDOM is also photodegraded by solar UV radiation. Changes in CDOM influence the penetration of UV radiation into water bodies with major consequences for aquatic biogeochemical processes. Changes in aquatic primary productivity and decomposition due to climate-related changes in circulation and nutrient supply occur concurrently with

  11. Interactive effects of solar UV radiation and climate change on biogeochemical cycling.

    PubMed

    Zepp, R G; Erickson, D J; Paul, N D; Sulzberger, B

    2007-03-01

    This report assesses research on the interactions of UV radiation (280-400 nm) and global climate change with global biogeochemical cycles at the Earth's surface. The effects of UV-B (280-315 nm), which are dependent on the stratospheric ozone layer, on biogeochemical cycles are often linked to concurrent exposure to UV-A radiation (315-400 nm), which is influenced by global climate change. These interactions involving UV radiation (the combination of UV-B and UV-A) are central to the prediction and evaluation of future Earth environmental conditions. There is increasing evidence that elevated UV-B radiation has significant effects on the terrestrial biosphere with implications for the cycling of carbon, nitrogen and other elements. The cycling of carbon and inorganic nutrients such as nitrogen can be affected by UV-B-mediated changes in communities of soil organisms, probably due to the effects of UV-B radiation on plant root exudation and/or the chemistry of dead plant material falling to the soil. In arid environments direct photodegradation can play a major role in the decay of plant litter, and UV-B radiation is responsible for a significant part of this photodegradation. UV-B radiation strongly influences aquatic carbon, nitrogen, sulfur and metals cycling that affect a wide range of life processes. UV-B radiation changes the biological availability of dissolved organic matter to microorganisms, and accelerates its transformation into dissolved inorganic carbon and nitrogen, including carbon dioxide and ammonium. The coloured part of dissolved organic matter (CDOM) controls the penetration of UV radiation into water bodies, but CDOM is also photodegraded by solar UV radiation. Changes in CDOM influence the penetration of UV radiation into water bodies with major consequences for aquatic biogeochemical processes. Changes in aquatic primary productivity and decomposition due to climate-related changes in circulation and nutrient supply occur concurrently with

  12. Combined unilateral lesions of the amygdala and orbital prefrontal cortex impair affective processing in rhesus monkeys.

    PubMed

    Izquierdo, Alicia; Murray, Elisabeth A

    2004-05-01

    The amygdala and orbital prefrontal cortex (PFo) interact as part of a system for affective processing. To assess whether there is a hemispheric functional specialization for the processing of emotion or reward or both in nonhuman primates, rhesus monkeys (Macaca mulatta) with combined lesions of the amygdala and PFo in one hemisphere, either left or right, were compared with unoperated controls on a battery of tasks that tax affective processing, including two tasks that tax reward processing and two that assess emotional reactions. Although the two operated groups did not differ from each other, monkeys with unilateral lesions, left and right, showed altered reward-processing abilities as evidenced by attenuated reinforcer devaluation effects and an impairment in object reversal learning relative to controls. In addition, both operated groups showed blunted emotional reactions to a rubber snake. By contrast, monkeys with unilateral lesions did not differ from controls in their responses to an unfamiliar human (human "intruder"). Although the results provide no support for a hemispheric specialization of function, they yield the novel finding that unilateral lesions of the amygdala-orbitofrontal cortical circuit in monkeys are sufficient to significantly disrupt affective processing. PMID:14711973

  13. Facial Affect Processing and Depression Susceptibility: Cognitive Biases and Cognitive Neuroscience

    ERIC Educational Resources Information Center

    Bistricky, Steven L.; Ingram, Rick E.; Atchley, Ruth Ann

    2011-01-01

    Facial affect processing is essential to social development and functioning and is particularly relevant to models of depression. Although cognitive and interpersonal theories have long described different pathways to depression, cognitive-interpersonal and evolutionary social risk models of depression focus on the interrelation of interpersonal…

  14. Social Information Processing in Children: Specific Relations to Anxiety, Depression, and Affect

    ERIC Educational Resources Information Center

    Luebbe, Aaron M.; Bell, Debora J.; Allwood, Maureen A.; Swenson, Lance P.; Early, Martha C.

    2010-01-01

    Two studies examined shared and unique relations of social information processing (SIP) to youth's anxious and depressive symptoms. Whether SIP added unique variance over and above trait affect in predicting internalizing symptoms was also examined. In Study 1, 215 youth (ages 8-13) completed symptom measures of anxiety and depression and a…

  15. 43 CFR 2.4 - Does where you send your request affect its processing?

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... OF INFORMATION ACT; RECORDS AND TESTIMONY How To Make a Request § 2.4 Does where you send your request affect its processing? (a) A request to a particular bureau component (for example, a request addressed to a regional or field office) will be presumed to seek only records from that...

  16. 43 CFR 2.6 - How will fee information affect the processing of your request?

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... FREEDOM OF INFORMATION ACT; RECORDS AND TESTIMONY How To Make a Request § 2.6 How will fee information... 43 Public Lands: Interior 1 2013-10-01 2013-10-01 false How will fee information affect the... associated with processing the request, that you will pay fees up to a specified amount, and/or that you...

  17. 43 CFR 2.6 - How will fee information affect the processing of your request?

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... FREEDOM OF INFORMATION ACT; RECORDS AND TESTIMONY How To Make a Request § 2.6 How will fee information... 43 Public Lands: Interior 1 2014-10-01 2014-10-01 false How will fee information affect the... associated with processing the request, that you will pay fees up to a specified amount, and/or that you...

  18. 43 CFR 2.4 - Does where you send your request affect its processing?

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... OF INFORMATION ACT; RECORDS AND TESTIMONY How To Make a Request § 2.4 Does where you send your request affect its processing? (a) A request to a particular bureau component (for example, a request addressed to a regional or field office) will be presumed to seek only records from that...

  19. Factors Affecting Christian Parents' School Choice Decision Processes: A Grounded Theory Study

    ERIC Educational Resources Information Center

    Prichard, Tami G.; Swezey, James A.

    2016-01-01

    This study identifies factors affecting the decision processes for school choice by Christian parents. Grounded theory design incorporated interview transcripts, field notes, and a reflective journal to analyze themes. Comparative analysis, including open, axial, and selective coding, was used to reduce the coded statements to five code families:…

  20. Approaching the Affective Factors of Information Seeking: The Viewpoint of the Information Search Process Model

    ERIC Educational Resources Information Center

    Savolainen, Reijo

    2015-01-01

    Introduction: The article contributes to the conceptual studies of affective factors in information seeking by examining Kuhlthau's information search process model. Method: This random-digit dial telephone survey of 253 people (75% female) living in a rural, medically under-serviced area of Ontario, Canada, follows-up a previous interview study…

  1. Transactional Distance among Open University Students: How Does it Affect the Learning Process?

    ERIC Educational Resources Information Center

    Kassandrinou, Amanda; Angelaki, Christina; Mavroidis, Ilias

    2014-01-01

    This study examines the presence of transactional distance among students, the factors affecting it, as well as the way it influences the learning process of students in a blended distance learning setting in Greece. The present study involved 12 postgraduate students of the Hellenic Open University (HOU). A qualitative research was conducted,…

  2. Processes affecting the transport of nitrogen in groundwater and factors related to slope position

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Nitrate (NO3-) pollution of water resources has been a major problem for years, causing contaminated water supplies, harmful effects on human health, and widespread eutrophication of fresh water resources. The main objectives of this study were to: 1) understand the processes affecting NO3- transpor...

  3. Atypical Sensory Processing in Adolescents with an Autism Spectrum Disorder and Their Non-Affected Siblings

    ERIC Educational Resources Information Center

    De la Marche, Wouter; Steyaert, Jean; Noens, Ilse

    2012-01-01

    Atypical sensory processing is common in autism spectrum disorders (ASD). Specific profiles have been proposed in different age groups, but no study has focused specifically on adolescents. Identifying traits of ASD that are shared by individuals with ASD and their non-affected family members can shed light on the genetic underpinnings of ASD.…

  4. Investigating the initial stages of soil formation in glacier forefields using the new biogeochemical model: SHIMMER

    NASA Astrophysics Data System (ADS)

    Bradley, James; Anesio, Alexandre; Arndt, Sandra; Sabacka, Marie; Barker, Gary; Benning, Liane; Blacker, Joshua; Singarayer, Joy; Tranter, Martyn; Yallop, Marian

    2016-04-01

    Glaciers and ice sheets in Polar and alpine regions are retreating in response to recent climate warming, exposing terrestrial ecosystems that have been locked under the ice for thousands of years. Exposed soils exhibit successional characteristics that can be characterised using a chronosequence approach. Decades of empirical research in glacier forefields has shown that soils are quickly colonised by microbes which drive biogeochemical cycling of elements and affect soil properties including nutrient concentrations, carbon fluxes and soil stability (Bradley et al, 2014). The characterisation of these soils is important for our understanding of the cycling of organic matter under extreme environmental and nutrient limiting conditions, and their potential contribution to global biogeochemical cycles. This is particularly important as these new areas will become more geographically expansive with continued ice retreat. SHIMMER (Soil biogeocHemIcal Model of Microbial Ecosystem Response) (Bradley et al, 2015) is a new mathematical model that simulates biogeochemical and microbial dynamics in glacier forefields. The model captures, explores and predicts the growth of different microbial groups (classified by function), and the associated cycling of carbon, nitrogen and phosphorus along a chronosequence. SHIMMER improves typical soil model formulations by including explicit representation of microbial dynamics, and those processes which are shown to be important for glacier forefields. For example, we categorise microbial groups by function to represent the diversity of soil microbial communities, and include the different metabolic needs and physiological pathways of microbial organisms commonly found in glacier forefields (e.g. microbes derived from underneath the glacier, typical soil bacteria, and microbes that can fix atmospheric nitrogen and assimilate soil nitrogen). Here, we present data from a study where we integrated modelling using SHIMMER with empirical

  5. Rapid communication: Global-local processing affects recognition of distractor emotional faces.

    PubMed

    Srinivasan, Narayanan; Gupta, Rashmi

    2011-03-01

    Recent studies have shown links between happy faces and global, distributed attention as well as sad faces to local, focused attention. Emotions have been shown to affect global-local processing. Given that studies on emotion-cognition interactions have not explored the effect of perceptual processing at different spatial scales on processing stimuli with emotional content, the present study investigated the link between perceptual focus and emotional processing. The study investigated the effects of global-local processing on the recognition of distractor faces with emotional expressions. Participants performed a digit discrimination task with digits at either the global level or the local level presented against a distractor face (happy or sad) as background. The results showed that global processing associated with broad scope of attention facilitates recognition of happy faces, and local processing associated with narrow scope of attention facilitates recognition of sad faces. The novel results of the study provide conclusive evidence for emotion-cognition interactions by demonstrating the effect of perceptual processing on emotional faces. The results along with earlier complementary results on the effect of emotion on global-local processing support a reciprocal relationship between emotional processing and global-local processing. Distractor processing with emotional information also has implications for theories of selective attention.

  6. Facial affect processing deficits in schizophrenia: A meta-analysis of antipsychotic treatment effects

    PubMed Central

    Kempton, Matthew J; Mehta, Mitul A

    2015-01-01

    Social cognition, including emotion processing, is a recognised deficit observed in patients with schizophrenia. It is one cognitive domain which has been emphasised as requiring further investigation, with the efficacy of antipsychotic treatment on this deficit remaining unclear. Nine studies met our criteria for entry into a meta-analysis of the effects of medication on facial affect processing, including data from 1162 patients and six antipsychotics. Overall we found a small, positive effect (Hedge’s g = 0.13, 95% CI 0.05 to 0.21, p = 0.002). In a subgroup analysis this was statistically significant for atypical, but not typical, antipsychotics. It should be noted that the pooled sample size of the typical subgroup was significantly lower than the atypical. Meta-regression analyses revealed that age, gender and changes in symptom severity were not moderating factors. For the small, positive effect on facial affect processing, the clinical significance is questionable in terms of treating deficits in emotion identification in schizophrenia. We show that antipsychotic medications are poor at improving facial affect processing compared to reducing symptoms. This highlights the need for further investigation into the neuropharmacological mechanisms associated with accurate emotion processing, to inform treatment options for these deficits in schizophrenia. PMID:25492885

  7. Biogeochemical cycling in the ocean. Part 1: Introduction to the effects of upwelling along the west coast of North America

    NASA Technical Reports Server (NTRS)

    Howe, John T.

    1986-01-01

    Coastal upwelling is examined as it relates to the cycling of chemical species in coastal waters along the west coast of North America. The temporal and spatial features of upwelling phenomena in the Eastern boundary regions of the North Pacific Ocean are presented and discussed in terms of upwelling episodes. Climate conditions affecting upwelling include: thermal effects, wind-induced shear stress which moves surface layers, and the curl of the wind stress vector which is thought to affect the extent and nature of upwelling and the formation of offshore convergent downwelling fronts. These effects and the interaction of sunlight and upwelled nutrients which result in a biological bloom in surface waters is modeled analytically. The roles of biological and chemical species, including the effects of predation, are discussed in that context, and relevant remote sensing and in situ observations are presented. Climatological, oceanographic, biological, physical, chemical events, and processes that pertain to biogeochemical cycling are presented and described by a set of partial differential equations. Simple preliminary results are obtained and are compared with data. Thus a fairly general framework has been laid where the many facets of biogeochemical cycling in coastal upwelled waters can be examined in their relationship to one another, and to the whole, to whatever level of detail or approximation is warranted or desired.

  8. Theta phase coherence in affective picture processing reveals dysfunctional sensory integration in psychopathic offenders.

    PubMed

    Tillem, Scott; Ryan, Jonathan; Wu, Jia; Crowley, Michael J; Mayes, Linda C; Baskin-Sommers, Arielle

    2016-09-01

    Psychopathic offenders are described as emotionally cold, displaying deficits in affective responding. However, research demonstrates that many of the psychopathy-related deficits are moderated by attention, such that under conditions of high attentional and perceptual load psychopathic offenders display deficits in affective responses, but do not in conditions of low load. To date, most studies use measures of defensive reflex (i.e., startle) and conditioning manipulations to examine the impact of load on psychopathy-related processing, but have not examined more direct measures of attention processing. In a sample of adult male offenders, the present study examined time-frequency EEG phase coherence in response to a picture-viewing paradigm that manipulated picture familiarity to assess neural changes in processing based on perceptual demands. Results indicated psychopathy-related differences in the theta response, an index of readiness to perceive and integrate sensory information. These data provide further evidence that psychopathic offenders have disrupted integration of sensory information.

  9. Quantifying the Variability of CH4 Emissions from Pan-Arctic Lakes with Lake Biogeochemical and Landscape Evolution Models

    NASA Astrophysics Data System (ADS)

    Tan, Z.; Zhuang, Q.

    2014-12-01

    Recent studies in the arctic and subarctic show that CH4 emissions from pan-arctic lakes are playing much more significant roles in the regional carbon cycling than previously estimated. Permafrost thawing due to pronounced warming at northern high latitudes affects lake morphology, changing its CH4 emissions. Thermokarst can enlarge the extent of artic lakes, exposing stable ancient carbon buried in the permafrost zone for degradation and changing a previously known carbon sink to a large carbon source. In some areas, the thawing of subarctic discontinuous and isolated permafrost can diminish thermokarst lakes. To date, few models have considered these important hydrological and biogeochemical processes to provide adequate estimation of CH4 emissions from these lakes. To fill this gap, we have developed a process-based climate-sensitive lake biogeochemical model and a landscape evolution model, which have been applied to quantify the state and variability of CH4 emissions from this freshwater system. Site-level experiments show the models are capable to capture the spatial and temporal variability of CH4 emissions from lakes across Siberia and Alaska. With the lake biogeochemical model solely, we estimate that the magnitude of CH4 emissions from lakes is 13.2 Tg yr-1 in the north of 60 ºN at present, which is on the same order of CH4 emissions from northern high-latitude wetlands. The maximum increment is 11.8 Tg CH4 yr-1 by the end of the 21st century when the worst warming scenario is assumed. We expect the landscape evolution model will improve the existing estimates.

  10. Protein Molecular Structures, Protein SubFractions, and Protein Availability Affected by Heat Processing: A Review

    SciTech Connect

    Yu,P.

    2007-01-01

    The utilization and availability of protein depended on the types of protein and their specific susceptibility to enzymatic hydrolysis (inhibitory activities) in the gastrointestine and was highly associated with protein molecular structures. Studying internal protein structure and protein subfraction profiles leaded to an understanding of the components that make up a whole protein. An understanding of the molecular structure of the whole protein was often vital to understanding its digestive behavior and nutritive value in animals. In this review, recently obtained information on protein molecular structural effects of heat processing was reviewed, in relation to protein characteristics affecting digestive behavior and nutrient utilization and availability. The emphasis of this review was on (1) using the newly advanced synchrotron technology (S-FTIR) as a novel approach to reveal protein molecular chemistry affected by heat processing within intact plant tissues; (2) revealing the effects of heat processing on the profile changes of protein subfractions associated with digestive behaviors and kinetics manipulated by heat processing; (3) prediction of the changes of protein availability and supply after heat processing, using the advanced DVE/OEB and NRC-2001 models, and (4) obtaining information on optimal processing conditions of protein as intestinal protein source to achieve target values for potential high net absorbable protein in the small intestine. The information described in this article may give better insight in the mechanisms involved and the intrinsic protein molecular structural changes occurring upon processing.

  11. Modelling benthic biophysical drivers of ecosystem structure and biogeochemical response

    NASA Astrophysics Data System (ADS)

    Stephens, Nicholas; Bruggeman, Jorn; Lessin, Gennadi; Allen, Icarus

    2016-04-01

    The fate of carbon deposited at the sea floor is ultimately decided by biophysical drivers that control the efficiency of remineralisation and timescale of carbon burial in sediments. Specifically, these drivers include bioturbation through ingestion and movement, burrow-flushing and sediment reworking, which enhance vertical particulate transport and solute diffusion. Unfortunately, these processes are rarely satisfactorily resolved in models. To address this, a benthic model that explicitly describes the vertical position of biology (e.g., habitats) and biogeochemical processes is presented that includes biological functionality and biogeochemical response capturing changes in ecosystem structure, benthic-pelagic fluxes and biodiversity on inter-annual timescales. This is demonstrated by the model's ability to reproduce temporal variability in benthic infauna, vertical pore water nutrients and pelagic-benthic solute fluxes compared to in-situ data. A key advance is the replacement of bulk parameterisation of bioturbation by explicit description of the bio-physical processes responsible. This permits direct comparison with observations and determination of key parameters in experiments. Crucially, the model resolves the two-way interaction between sediment biogeochemistry and ecology, allowing exploration of the benthic response to changing environmental conditions, the importance of infaunal functional traits in shaping benthic ecological structure and the feedback the resulting bio-physical processes exert on pore water nutrient profiles. The model is actively being used to understand shelf sea carbon cycling, the response of the benthos to climatic change, food provision and other societal benefits.

  12. The changing role of dust in biogeochemical cycling

    NASA Astrophysics Data System (ADS)

    Neff, J. C.; Reynolds, R. L.; Farmer, G. L.; Reheis, M.

    2007-12-01

    Dust emission and deposition have the potential to deplete and enrich ecosystems of mineral resources essential to life. In many parts of the world, and particularly in semi-arid settings, wind erosion of soils and the subsequent long-distance transport and deposition of mineral aerosols play a basic role in soil composition and processes, including the production of essential plant nutrients through weathering. Although the long-term role of dust in the development of soils is reasonably well understood, the effects of recent dust emission and deposition on ecosystems are not. Recent work on ecosystems around the world has highlighted the fundamental importance of contemporary wind erosion and dust deposition in biogeochemical cycling. In the western U.S., studies of Sr and Nd isotopes, elemental concentrations, and magnetic properties elucidate the role of dust in recent soil development and soil loss by wind erosion related to land-use change. In the arid landscapes in and around Canyonlands National Park (Utah), these techniques provide insight into the development of soils in stable settings where human activities have been minimal but the loss of soil in areas affected by grazing and recreational activities. In stable settings of the central Colorado Plateau (Utah), dust deposition is responsible for a large proportion (as much as 20 percent) of surface soil mass and elemental content. In contrast, wind erosion is responsible for large losses of nutrients and surface soil of nearby, closely similar geomorphic settings disturbed by human activity. In the San Juan Mountains (Colorado) downwind of the Colorado Plateau, Nd and Sr isotopes in dust and lake sediments provide evidence for large increases in dust deposition during the 19th and 20th century compared to records from the middle to late Holocene. The recent enhancement in dust deposition is also responsible for increased loading of many elements, including essential nutrients that may influence

  13. Parallel effects of processing fluency and positive affect on familiarity-based recognition decisions for faces

    PubMed Central

    Duke, Devin; Fiacconi, Chris M.; Köhler, Stefan

    2014-01-01

    According to attribution models of familiarity assessment, people can use a heuristic in recognition-memory decisions, in which they attribute the subjective ease of processing of a memory probe to a prior encounter with the stimulus in question. Research in social cognition suggests that experienced positive affect may be the proximal cue that signals fluency in various experimental contexts. In the present study, we compared the effects of positive affect and fluency on recognition-memory judgments for faces with neutral emotional expression. We predicted that if positive affect is indeed the critical cue that signals processing fluency at retrieval, then its manipulation should produce effects that closely mirror those produced by manipulations of processing fluency. In two experiments, we employed a masked-priming procedure in combination with a Remember-Know (RK) paradigm that aimed to separate familiarity- from recollection-based memory decisions. In addition, participants performed a prime-discrimination task that allowed us to take inter-individual differences in prime awareness into account. We found highly similar effects of our priming manipulations of processing fluency and of positive affect. In both cases, the critical effect was specific to familiarity-based recognition responses. Moreover, in both experiments it was reflected in a shift toward a more liberal response bias, rather than in changed discrimination. Finally, in both experiments, the effect was found to be related to prime awareness; it was present only in participants who reported a lack of such awareness on the prime-discrimination task. These findings add to a growing body of evidence that points not only to a role of fluency, but also of positive affect in familiarity assessment. As such they are consistent with the idea that fluency itself may be hedonically marked. PMID:24795678

  14. Small pores in soils: Is the physico-chemical environment accurately reflected in biogeochemical models ?

    NASA Astrophysics Data System (ADS)

    Weber, Tobias K. D.; Riedel, Thomas

    2015-04-01

    Free water is a prerequesite to chemical reactions and biological activity in earth's upper crust essential to life. The void volume between the solid compounds provides space for water, air, and organisms that thrive on the consumption of minerals and organic matter thereby regulating soil carbon turnover. However, not all water in the pore space in soils and sediments is in its liquid state. This is a result of the adhesive forces which reduce the water activity in small pores and charged mineral surfaces. This water has a lower tendency to react chemically in solution as this additional binding energy lowers its activity. In this work, we estimated the amount of soil pore water that is thermodynamically different from a simple aqueous solution. The quantity of soil pore water with properties different to liquid water was found to systematically increase with increasing clay content. The significance of this is that the grain size and surface area apparently affects the thermodynamic state of water. This implies that current methods to determine the amount of water content, traditionally determined from bulk density or gravimetric water content after drying at 105°C overestimates the amount of free water in a soil especially at higher clay content. Our findings have consequences for biogeochemical processes in soils, e.g. nutrients may be contained in water which is not free which could enhance preservation. From water activity measurements on a set of various soils with 0 to 100 wt-% clay, we can show that 5 to 130 mg H2O per g of soil can generally be considered as unsuitable for microbial respiration. These results may therefore provide a unifying explanation for the grain size dependency of organic matter preservation in sedimentary environments and call for a revised view on the biogeochemical environment in soils and sediments. This could allow a different type of process oriented modelling.

  15. Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment.

    PubMed

    Yabusaki, Steven B; Fang, Yilin; Williams, Kenneth H; Murray, Christopher J; Ward, Andy L; Dayvault, Richard D; Waichler, Scott R; Newcomer, Darrell R; Spane, Frank A; Long, Philip E

    2011-11-01

    in higher concentrations of TEAP reaction products when terminal electron donors and acceptors were not limiting. Finally, facies-based porosity and reactive surface area variations were shown to affect aqueous uranium concentration distributions with localized effects of the fine lithofacies having the largest impact on U(VI) surface complexation. The ability to model the comprehensive biogeochemical reaction network, and spatially and temporally variable processes, properties, and conditions controlling uranium behavior during engineered bioremediation in the naturally complex Rifle IFRC subsurface system required a subsurface simulator that could use the large memory and computational performance of a massively parallel computer. In this case, the eSTOMP simulator, operating on 128 processor cores for 12h, was used to simulate the 110-day field experiment and 50 days of post-biostimulation behavior.

  16. Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment

    NASA Astrophysics Data System (ADS)

    Yabusaki, Steven B.; Fang, Yilin; Williams, Kenneth H.; Murray, Christopher J.; Ward, Andy L.; Dayvault, Richard D.; Waichler, Scott R.; Newcomer, Darrell R.; Spane, Frank A.; Long, Philip E.

    2011-11-01

    in higher concentrations of TEAP reaction products when terminal electron donors and acceptors were not limiting. Finally, facies-based porosity and reactive surface area variations were shown to affect aqueous uranium concentration distributions with localized effects of the fine lithofacies having the largest impact on U(VI) surface complexation. The ability to model the comprehensive biogeochemical reaction network, and spatially and temporally variable processes, properties, and conditions controlling uranium behavior during engineered bioremediation in the naturally complex Rifle IFRC subsurface system required a subsurface simulator that could use the large memory and computational performance of a massively parallel computer. In this case, the eSTOMP simulator, operating on 128 processor cores for 12 h, was used to simulate the 110-day field experiment and 50 days of post-biostimulation behavior.

  17. Extraversion and reward-related processing: probing incentive motivation in affective priming tasks.

    PubMed

    Robinson, Michael D; Moeller, Sara K; Ode, Scott

    2010-10-01

    Based on an incentive motivation theory of extraversion (Depue & Collins, 1999), it was hypothesized that extraverts (relative to introverts) would exhibit stronger positive priming effects in affective priming tasks, whether involving words or pictures. This hypothesis was systematically supported in four studies involving 229 undergraduates. In each of the four studies, and in a subsequent combined analysis, extraversion was positively predictive of positive affective priming effects, but was not predictive of negative affective priming effects. The results bridge an important gap in the literature between biological and trait models of incentive motivation and do so in a way that should be informative to subsequent efforts to understand the processing basis of extraversion as well as incentive motivation.

  18. Microbial diversity and biogeochemical cycling in soda lakes.

    PubMed

    Sorokin, Dimitry Y; Berben, Tom; Melton, Emily Denise; Overmars, Lex; Vavourakis, Charlotte D; Muyzer, Gerard

    2014-09-01

    Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments. PMID:25156418

  19. Microbial diversity and biogeochemical cycling in soda lakes.

    PubMed

    Sorokin, Dimitry Y; Berben, Tom; Melton, Emily Denise; Overmars, Lex; Vavourakis, Charlotte D; Muyzer, Gerard

    2014-09-01

    Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments.

  20. Performance processes within affect-related performance zones: a multi-modal investigation of golf performance.

    PubMed

    van der Lei, Harry; Tenenbaum, Gershon

    2012-12-01

    Individual affect-related performance zones (IAPZs) method utilizing Kamata et al. (J Sport Exerc Psychol 24:189-208, 2002) probabilistic model of determining the individual zone of optimal functioning was utilized as idiosyncratic affective patterns during golf performance. To do so, three male golfers of a varsity golf team were observed during three rounds of golf competition. The investigation implemented a multi-modal assessment approach in which the probabilistic relationship between affective states and both, performance process and performance outcome, measures were determined. More specifically, introspective (i.e., verbal reports) and objective (heart rate and respiration rate) measures of arousal were incorporated to examine the relationships between arousal states and both, process components (i.e., routine consistency, timing), and outcome scores related to golf performance. Results revealed distinguishable and idiosyncratic IAPZs associated with physiological and introspective measures for each golfer. The associations between the IAPZs and decision-making or swing/stroke execution were strong and unique for each golfer. Results are elaborated using cognitive and affect-related concepts, and applications for practitioners are provided.

  1. Abnormal neural processing during emotional salience attribution of affective asymmetry in patients with schizophrenia.

    PubMed

    Lee, Seon-Koo; Chun, Ji Won; Lee, Jung Suk; Park, Hae-Jeong; Jung, Young-Chul; Seok, Jeong-Ho; Kim, Jae-Jin

    2014-01-01

    Aberrant emotional salience attribution has been reported to be an important clinical feature in patients with schizophrenia. Real life stimuli that incorporate both positive and negative emotional traits lead to affective asymmetry such as negativity bias and positivity offset. In this study, we investigated the neural correlates of emotional salience attribution in patients with schizophrenia when affective asymmetry was processed. Fifteen patients with schizophrenia and 14 healthy controls were scanned using functional magnetic resonance imaging (fMRI) while performing an emotion judgment task in which two pictures were juxtaposed. The task consisted of responding to affective asymmetry condition (ambivalent and neutral) and affective symmetry conditions (positive and negative), and group comparisons were performed for each condition. Significantly higher activity in the medial prefrontal cortex and inferior frontal gyrus was observed for the ambivalent condition than for the other conditions in controls, but not in patients. Compared with controls, patients showed decreased activities in the dorsolateral prefrontal cortex, dorsal anterior cingulate cortex, insula, and putamen for the ambivalent condition, but no changes were observed for the neutral condition. Multiple prefrontal hypoactivities during salience attribution of negativity bias in schizophrenia may underlie deficits in the integrative processing of emotional information. Regional abnormalities in the salience network may be the basis of defective emotional salience attribution in schizophrenia, which is likely involved in symptom formation and social dysfunction.

  2. Advancing the Assessment of Personality Pathology With the Cognitive-Affective Processing System.

    PubMed

    Huprich, Steven K; Nelson, Sharon M

    2015-01-01

    The Cognitive-Affective Processing System (CAPS) is a dynamic and expansive model of personality proposed by Mischel and Shoda (1995) that incorporates dispositional and processing frameworks by considering the interaction of the individual and the situation, and the patterns of variation that result. These patterns of cognition, affect, and behavior are generally defined through the use of if … then statements, and provide a rich understanding of the individual across varying levels of assessment. In this article, we describe the CAPS model and articulate ways in which it can be applied to conceptualizing and assessing personality pathology. We suggest that the CAPS model is an ideal framework that integrates a number of current theories of personality pathology, and simultaneously overcomes a number of limits that have been empirically identified in the past.

  3. Advancing the Assessment of Personality Pathology With the Cognitive-Affective Processing System.

    PubMed

    Huprich, Steven K; Nelson, Sharon M

    2015-01-01

    The Cognitive-Affective Processing System (CAPS) is a dynamic and expansive model of personality proposed by Mischel and Shoda (1995) that incorporates dispositional and processing frameworks by considering the interaction of the individual and the situation, and the patterns of variation that result. These patterns of cognition, affect, and behavior are generally defined through the use of if … then statements, and provide a rich understanding of the individual across varying levels of assessment. In this article, we describe the CAPS model and articulate ways in which it can be applied to conceptualizing and assessing personality pathology. We suggest that the CAPS model is an ideal framework that integrates a number of current theories of personality pathology, and simultaneously overcomes a number of limits that have been empirically identified in the past. PMID:26214351

  4. Positive Affect Processing and Joint Attention in Infants at High Risk for Autism: An Exploratory Study.

    PubMed

    Key, Alexandra P; Ibanez, Lisa V; Henderson, Heather A; Warren, Zachary; Messinger, Daniel S; Stone, Wendy L

    2015-12-01

    Few behavioral indices of risk for autism spectrum disorders (ASD) are present before 12 months, and potential biomarkers remain largely unexamined. This prospective study of infant siblings of children with ASD (n = 16) and low-risk comparison infants (n = 15) examined group differences in event-related potentials (ERPs) indexing processing of facial positive affect (N290/P400, Nc) at 9 months and their relation to joint attention at 15 months. Group differences were most pronounced for subtle facial expressions, in that the low-risk group exhibited relatively longer processing (P400 latency) and greater attention resource allocation (Nc amplitude). Exploratory analyses found associations between ERP responses and later joint attention, suggesting that attention to positive affect cues may support the development of other social competencies.

  5. Integrative Processing of Touch and Affect in Social Perception: An fMRI Study

    PubMed Central

    Ebisch, Sjoerd J. H.; Salone, Anatolia; Martinotti, Giovanni; Carlucci, Leonardo; Mantini, Dante; Perrucci, Mauro G.; Saggino, Aristide; Romani, Gian Luca; Di Giannantonio, Massimo; Northoff, Georg; Gallese, Vittorio

    2016-01-01

    Social perception commonly employs multiple sources of information. The present study aimed at investigating the integrative processing of affective social signals. Task-related and task-free functional magnetic resonance imaging was performed in 26 healthy adult participants during a social perception task concerning dynamic visual stimuli simultaneously depicting facial expressions of emotion and tactile sensations that could be either congruent or incongruent. Confounding effects due to affective valence, inhibitory top–down influences, cross-modal integration, and conflict processing were minimized. The results showed that the perception of congruent, compared to incongruent stimuli, elicited enhanced neural activity in a set of brain regions including left amygdala, bilateral posterior cingulate cortex (PCC), and left superior parietal cortex. These congruency effects did not differ as a function of emotion or sensation. A complementary task-related functional interaction analysis preliminarily suggested that amygdala activity depended on previous processing stages in fusiform gyrus and PCC. The findings provide support for the integrative processing of social information about others’ feelings from manifold bodily sources (sensory-affective information) in amygdala and PCC. Given that the congruent stimuli were also judged as being more self-related and more familiar in terms of personal experience in an independent sample of participants, we speculate that such integrative processing might be mediated by the linking of external stimuli with self-experience. Finally, the prediction of task-related responses in amygdala by intrinsic functional connectivity between amygdala and PCC during a task-free state implies a neuro-functional basis for an individual predisposition for the integrative processing of social stimulus content. PMID:27242474

  6. Integrative Processing of Touch and Affect in Social Perception: An fMRI Study.

    PubMed

    Ebisch, Sjoerd J H; Salone, Anatolia; Martinotti, Giovanni; Carlucci, Leonardo; Mantini, Dante; Perrucci, Mauro G; Saggino, Aristide; Romani, Gian Luca; Di Giannantonio, Massimo; Northoff, Georg; Gallese, Vittorio

    2016-01-01

    Social perception commonly employs multiple sources of information. The present study aimed at investigating the integrative processing of affective social signals. Task-related and task-free functional magnetic resonance imaging was performed in 26 healthy adult participants during a social perception task concerning dynamic visual stimuli simultaneously depicting facial expressions of emotion and tactile sensations that could be either congruent or incongruent. Confounding effects due to affective valence, inhibitory top-down influences, cross-modal integration, and conflict processing were minimized. The results showed that the perception of congruent, compared to incongruent stimuli, elicited enhanced neural activity in a set of brain regions including left amygdala, bilateral posterior cingulate cortex (PCC), and left superior parietal cortex. These congruency effects did not differ as a function of emotion or sensation. A complementary task-related functional interaction analysis preliminarily suggested that amygdala activity depended on previous processing stages in fusiform gyrus and PCC. The findings provide support for the integrative processing of social information about others' feelings from manifold bodily sources (sensory-affective information) in amygdala and PCC. Given that the congruent stimuli were also judged as being more self-related and more familiar in terms of personal experience in an independent sample of participants, we speculate that such integrative processing might be mediated by the linking of external stimuli with self-experience. Finally, the prediction of task-related responses in amygdala by intrinsic functional connectivity between amygdala and PCC during a task-free state implies a neuro-functional basis for an individual predisposition for the integrative processing of social stimulus content. PMID:27242474

  7. Investigation of In-situ Biogeochemical Reduction of Chlorinated Solvents in Groundwater by Reduced Iron Minerals

    EPA Science Inventory

    Biogeochemical transformation is a process in which chlorinated solvents are degraded abiotically by reactive minerals formed by, at least in part or indirectly from, anaerobic biological processes. Five mulch biowall and/or vegetable oil-based bioremediation applications for tr...

  8. Water pulses and biogeochemical cycles in arid and semiarid ecosystems.

    PubMed

    Austin, Amy T; Yahdjian, Laura; Stark, John M; Belnap, Jayne; Porporato, Amilcare; Norton, Urszula; Ravetta, Damián A; Schaeffer, Sean M

    2004-10-01

    The episodic nature of water availability in arid and semiarid ecosystems has significant consequences on belowground carbon and nutrient cycling. Pulsed water events directly control belowground processes through soil wet-dry cycles. Rapid soil microbial response to incident moisture availability often results in almost instantaneous C and N mineralization, followed by shifts in C/N of microbially available substrate, and an offset in the balance between nutrient immobilization and mineralization. Nitrogen inputs from biological soil crusts are also highly sensitive to pulsed rain events, and nitrogen losses, particularly gaseous losses due to denitrification and nitrate leaching, are tightly linked to pulses of water availability. The magnitude of the effect of water pulses on carbon and nutrient pools, however, depends on the distribution of resource availability and soil organisms, both of which are strongly affected by the spatial and temporal heterogeneity of vegetation cover, topographic position and soil texture. The 'inverse texture hypothesis' for net primary production in water-limited ecosystems suggests that coarse-textured soils have higher NPP than fine-textured soils in very arid zones due to reduced evaporative losses, while NPP is greater in fine-textured soils in higher rainfall ecosystems due to increased water-holding capacity. With respect to belowground processes, fine-textured soils tend to have higher water-holding capacity and labile C and N pools than coarse-textured soils, and often show a much greater flush of N mineralization. The result of the interaction of texture and pulsed rainfall events suggests a corollary hypothesis for nutrient turnover in arid and semiarid ecosystems with a linear increase of N mineralization in coarse-textured soils, but a saturating response for fine-textured soils due to the importance of soil C and N pools. Seasonal distribution of water pulses can lead to the accumulation of mineral N in the dry season

  9. Intrinsic colony conditions affect the provisioning and oviposition process in the stingless bee Melipona scutellaris.

    PubMed

    Pereira, R A; Morais, M M; Nascimento, F S; Bego, L R

    2009-01-01

    The cell provisioning and oviposition process (POP) is a unique characteristic of stingless bees (Meliponini), in which coordinated interactions between workers and queen regulate the filling of brood cells with larval resources and subsequent egg laying. Environmental conditions seem to regulate reproduction in stingless bees; however, little is known about how the amount of food affects quantitative sequences of the process. We examined intrinsic variables by comparing three colonies in distinct conditions (strong, intermediate and weak state). We predicted that some of these variables are correlated with temporal events of POP in Melipona scutellaris colonies. The results demonstrated that the strong colony had shorter periods of POP.

  10. The effect of welding line heat-affected-zone on the formability of tube hydroforming process

    NASA Astrophysics Data System (ADS)

    ChiuHuang, Cheng-Kai; Hsu, Cheng-En; Lee, Ping-Kun

    2016-08-01

    Tube hydroforming has been used as a lightweight design approach to reduce CO2 emission for the automotive industry. For the high strength steel tube, the strength and quality of the welding line is very important for a successful tube hydroforming process. This paper aims to investigate the effect of the welding line's strength and the width of the heat-affected zone on the tube thinning during the hydroforming process. The simulation results show that both factors play an important role on the thickness distribution during the tube expansion.

  11. Intrinsic colony conditions affect the provisioning and oviposition process in the stingless bee Melipona scutellaris.

    PubMed

    Pereira, R A; Morais, M M; Nascimento, F S; Bego, L R

    2009-01-01

    The cell provisioning and oviposition process (POP) is a unique characteristic of stingless bees (Meliponini), in which coordinated interactions between workers and queen regulate the filling of brood cells with larval resources and subsequent egg laying. Environmental conditions seem to regulate reproduction in stingless bees; however, little is known about how the amount of food affects quantitative sequences of the process. We examined intrinsic variables by comparing three colonies in distinct conditions (strong, intermediate and weak state). We predicted that some of these variables are correlated with temporal events of POP in Melipona scutellaris colonies. The results demonstrated that the strong colony had shorter periods of POP. PMID:19554772

  12. Water quality and processes affecting dissolved oxygen concentrations in the Blackwater River, Canaan Valley, West Virginia

    USGS Publications Warehouse

    Waldron, M.C.; Wiley, J.B.

    1996-01-01

    The water quality and environmental processes affecting dissolved oxygen were determined for the Blackwater River in Canaan Valley, West Virginia. Canaan Valley is oval-shaped (14 miles by 5 miles) and is located in the Allegheny Mountains at an average elevation of 3,200 feet above sea level. Tourism, population, and real estate development have increased in the past two decades. Most streams in Canaan Valley are a dilute calcium magnesium bicarbonate-type water. Streamwater typicaly was soft and low in alkalinity and dissolved solids. Maximum values for specific conductance, hardness, alkalinity, and dissolved solids occurred during low-flow periods when streamflow was at or near baseflow. Dissolved oxygen concentrations are most sensitive to processes affecting the rate of reaeration. The reaeration is affected by solubility (atmospheric pressure, water temperature, humidity, and cloud cover) and processes that determine stream turbulence (stream depth, width, velocity, and roughness). In the headwaters, photosynthetic dissolved oxygen production by benthic algae can result in supersaturated dissolved oxygen concentrations. In beaver pools, dissolved oxygen consumption from sediment oxygen demand and carbonaceous biochemical oxygen demand can result in dissolved oxygen deficits.

  13. Using Bayesian Nonparametric Hidden Semi-Markov Models to Disentangle Affect Processes during Marital Interaction

    PubMed Central

    Griffin, William A.; Li, Xun

    2016-01-01

    Sequential affect dynamics generated during the interaction of intimate dyads, such as married couples, are associated with a cascade of effects—some good and some bad—on each partner, close family members, and other social contacts. Although the effects are well documented, the probabilistic structures associated with micro-social processes connected to the varied outcomes remain enigmatic. Using extant data we developed a method of classifying and subsequently generating couple dynamics using a Hierarchical Dirichlet Process Hidden semi-Markov Model (HDP-HSMM). Our findings indicate that several key aspects of existing models of marital interaction are inadequate: affect state emissions and their durations, along with the expected variability differences between distressed and nondistressed couples are present but highly nuanced; and most surprisingly, heterogeneity among highly satisfied couples necessitate that they be divided into subgroups. We review how this unsupervised learning technique generates plausible dyadic sequences that are sensitive to relationship quality and provide a natural mechanism for computational models of behavioral and affective micro-social processes. PMID:27187319

  14. Using Bayesian Nonparametric Hidden Semi-Markov Models to Disentangle Affect Processes during Marital Interaction.

    PubMed

    Griffin, William A; Li, Xun

    2016-01-01

    Sequential affect dynamics generated during the interaction of intimate dyads, such as married couples, are associated with a cascade of effects-some good and some bad-on each partner, close family members, and other social contacts. Although the effects are well documented, the probabilistic structures associated with micro-social processes connected to the varied outcomes remain enigmatic. Using extant data we developed a method of classifying and subsequently generating couple dynamics using a Hierarchical Dirichlet Process Hidden semi-Markov Model (HDP-HSMM). Our findings indicate that several key aspects of existing models of marital interaction are inadequate: affect state emissions and their durations, along with the expected variability differences between distressed and nondistressed couples are present but highly nuanced; and most surprisingly, heterogeneity among highly satisfied couples necessitate that they be divided into subgroups. We review how this unsupervised learning technique generates plausible dyadic sequences that are sensitive to relationship quality and provide a natural mechanism for computational models of behavioral and affective micro-social processes. PMID:27187319

  15. The effects of physical environments in medical wards on medication communication processes affecting patient safety.

    PubMed

    Liu, Wei; Manias, Elizabeth; Gerdtz, Marie

    2014-03-01

    Physical environments of clinical settings play an important role in health communication processes. Effective medication management requires seamless communication among health professionals of different disciplines. This paper explores how physical environments affect communication processes for managing medications and patient safety in acute care hospital settings. Findings highlighted the impact of environmental interruptions on communication processes about medications. In response to frequent interruptions and limited space within working environments, nurses, doctors and pharmacists developed adaptive practices in the local clinical context. Communication difficulties were associated with the ward physical layout, the controlled drug key and the medication retrieving device. Health professionals should be provided with opportunities to discuss the effects of ward environments on medication communication processes and how this impacts medication safety. Hospital administrators and architects need to consider health professionals' views and experiences when designing hospital spaces. PMID:24486620

  16. The effects of physical environments in medical wards on medication communication processes affecting patient safety.

    PubMed

    Liu, Wei; Manias, Elizabeth; Gerdtz, Marie

    2014-03-01

    Physical environments of clinical settings play an important role in health communication processes. Effective medication management requires seamless communication among health professionals of different disciplines. This paper explores how physical environments affect communication processes for managing medications and patient safety in acute care hospital settings. Findings highlighted the impact of environmental interruptions on communication processes about medications. In response to frequent interruptions and limited space within working environments, nurses, doctors and pharmacists developed adaptive practices in the local clinical context. Communication difficulties were associated with the ward physical layout, the controlled drug key and the medication retrieving device. Health professionals should be provided with opportunities to discuss the effects of ward environments on medication communication processes and how this impacts medication safety. Hospital administrators and architects need to consider health professionals' views and experiences when designing hospital spaces.

  17. TMS affects moral judgment, showing the role of DLPFC and TPJ in cognitive and emotional processing.

    PubMed

    Jeurissen, Danique; Sack, Alexander T; Roebroeck, Alard; Russ, Brian E; Pascual-Leone, Alvaro

    2014-01-01

    Decision-making involves a complex interplay of emotional responses and reasoning processes. In this study, we use TMS to explore the neurobiological substrates of moral decisions in humans. To examining the effects of TMS on the outcome of a moral-decision, we compare the decision outcome of moral-personal and moral-impersonal dilemmas to each other and examine the differential effects of applying TMS over the right DLPFC or right TPJ. In this comparison, we find that the TMS-induced disruption of the DLPFC during the decision process, affects the outcome of the moral-personal judgment, while TMS-induced disruption of TPJ affects only moral-impersonal conditions. In other words, we find a double-dissociation between DLPFC and TPJ in the outcome of a moral decision. Furthermore, we find that TMS-induced disruption of the DLPFC during non-moral, moral-impersonal, and moral-personal decisions lead to lower ratings of regret about the decision. Our results are in line with the dual-process theory and suggest a role for both the emotional response and cognitive reasoning process in moral judgment. Both the emotional and cognitive processes were shown to be involved in the decision outcome.

  18. Early neural activation during facial affect processing in adolescents with Autism Spectrum Disorder☆

    PubMed Central

    Leung, Rachel C.; Pang, Elizabeth W.; Cassel, Daniel; Brian, Jessica A.; Smith, Mary Lou; Taylor, Margot J.

    2014-01-01

    Impaired social interaction is one of the hallmarks of Autism Spectrum Disorder (ASD). Emotional faces are arguably the most critical visual social stimuli and the ability to perceive, recognize, and interpret emotions is central to social interaction and communication, and subsequently healthy social development. However, our understanding of the neural and cognitive mechanisms underlying emotional face processing in adolescents with ASD is limited. We recruited 48 adolescents, 24 with high functioning ASD and 24 typically developing controls. Participants completed an implicit emotional face processing task in the MEG. We examined spatiotemporal differences in neural activation between the groups during implicit angry and happy face processing. While there were no differences in response latencies between groups across emotions, adolescents with ASD had lower accuracy on the implicit emotional face processing task when the trials included angry faces. MEG data showed atypical neural activity in adolescents with ASD during angry and happy face processing, which included atypical activity in the insula, anterior and posterior cingulate and temporal and orbitofrontal regions. Our findings demonstrate differences in neural activity during happy and angry face processing between adolescents with and without ASD. These differences in activation in social cognitive regions may index the difficulties in face processing and in comprehension of social reward and punishment in the ASD group. Thus, our results suggest that atypical neural activation contributes to impaired affect processing, and thus social cognition, in adolescents with ASD. PMID:25610782

  19. Early neural activation during facial affect processing in adolescents with Autism Spectrum Disorder.

    PubMed

    Leung, Rachel C; Pang, Elizabeth W; Cassel, Daniel; Brian, Jessica A; Smith, Mary Lou; Taylor, Margot J

    2015-01-01

    Impaired social interaction is one of the hallmarks of Autism Spectrum Disorder (ASD). Emotional faces are arguably the most critical visual social stimuli and the ability to perceive, recognize, and interpret emotions is central to social interaction and communication, and subsequently healthy social development. However, our understanding of the neural and cognitive mechanisms underlying emotional face processing in adolescents with ASD is limited. We recruited 48 adolescents, 24 with high functioning ASD and 24 typically developing controls. Participants completed an implicit emotional face processing task in the MEG. We examined spatiotemporal differences in neural activation between the groups during implicit angry and happy face processing. While there were no differences in response latencies between groups across emotions, adolescents with ASD had lower accuracy on the implicit emotional face processing task when the trials included angry faces. MEG data showed atypical neural activity in adolescents with ASD during angry and happy face processing, which included atypical activity in the insula, anterior and posterior cingulate and temporal and orbitofrontal regions. Our findings demonstrate differences in neural activity during happy and angry face processing between adolescents with and without ASD. These differences in activation in social cognitive regions may index the difficulties in face processing and in comprehension of social reward and punishment in the ASD group. Thus, our results suggest that atypical neural activation contributes to impaired affect processing, and thus social cognition, in adolescents with ASD. PMID:25610782

  20. Early neural activation during facial affect processing in adolescents with Autism Spectrum Disorder.

    PubMed

    Leung, Rachel C; Pang, Elizabeth W; Cassel, Daniel; Brian, Jessica A; Smith, Mary Lou; Taylor, Margot J

    2015-01-01

    Impaired social interaction is one of the hallmarks of Autism Spectrum Disorder (ASD). Emotional faces are arguably the most critical visual social stimuli and the ability to perceive, recognize, and interpret emotions is central to social interaction and communication, and subsequently healthy social development. However, our understanding of the neural and cognitive mechanisms underlying emotional face processing in adolescents with ASD is limited. We recruited 48 adolescents, 24 with high functioning ASD and 24 typically developing controls. Participants completed an implicit emotional face processing task in the MEG. We examined spatiotemporal differences in neural activation between the groups during implicit angry and happy face processing. While there were no differences in response latencies between groups across emotions, adolescents with ASD had lower accuracy on the implicit emotional face processing task when the trials included angry faces. MEG data showed atypical neural activity in adolescents with ASD during angry and happy face processing, which included atypical activity in the insula, anterior and posterior cingulate and temporal and orbitofrontal regions. Our findings demonstrate differences in neural activity during happy and angry face processing between adolescents with and without ASD. These differences in activation in social cognitive regions may index the difficulties in face processing and in comprehension of social reward and punishment in the ASD group. Thus, our results suggest that atypical neural activation contributes to impaired affect processing, and thus social cognition, in adolescents with ASD.

  1. Ecohydrological Interfaces as Dynamic Hotspots of Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Krause, Stefan; Lewandowski, Joerg; Hannah, David; McDonald, Karlie; Folegot, Silvia; Baranov, Victor

    2016-04-01

    Ecohydrological interfaces, represent the boundaries between water-dependent ecosystems that can alter substantially the fluxes of energy and matter. There is still a critical gap of understanding the organisational principles of the drivers and controls of spatially and temporally variable ecohydrological interface functions. This knowledge gap limits our capacity to efficiently quantify, predict and manage the services provided by complex ecosystems. Many ecohydrological interfaces are characterized by step changes in microbial metabolic activity, steep redox gradients and often even thermodynamic phase shifts, for instance at the interfaces between atmosphere and water or soil matrix and macro-pores interfaces. This paper integrates investigations from point scale laboratory microcosm experiments with reach and subcatchment scale tracer experiments and numerical modeling studies to elaborate similarities in the drivers and controls that constitute the enhanced biogeochemical activity of different types of ecohydrologica interfaces across a range of spatial and temporal scales. We therefore combine smart metabolic activity tracers to quantify the impact of bioturbating benthic fauna onto ecosystem respiration and oxygen consumption and investigate at larger scale, how microbial metabolic activity and carbon turnover at the water-sediment interface are controlled by sediment physical and chemical properties as well as water temperatures. Numerical modeling confirmed that experimentally identified hotspots of streambed biogeochemical cycling were controlled by patterns of physical properties such as hydraulic conductivities or bioavailability of organic matter, impacting on residence time distributions and hence reaction times. In contrast to previous research, our investigations thus confirmed that small-scale variability of physical and chemical interface properties had a major impact on biogeochemical processing at the investigated ecohydrological interfaces

  2. Ecohydrological Interfaces as Dynamic Hotspots of Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Krause, S.

    2015-12-01

    Ecohydrological interfaces, represent the boundaries between water-dependent ecosystems that can alter substantially the fluxes of energy and matter. There is still a critical gap of understanding the organisational principles of the drivers and controls of spatially and temporally variable ecohydrological interface functions. This knowledge gap limits our capacity to efficiently quantify, predict and manage the services provided by complex ecosystems. Many ecohydrological interfaces are characterized by step changes in microbial metabolic activity, steep redox gradients and often even thermodynamic phase shifts, for instance at the interfaces between atmosphere and water or soil matrix and macro-pores interfaces. This paper integrates investigations from point scale microcosm experiments with reach and subcatchment scale tracer experiments and numerical modeling studies to elaborate similarities in the drivers and controls that constitute the enhanced biogeochemical activity of different types of ecohydrologica interfaces across a range of spatial and temporal scales. We therefore combine smart metabolic activity tracers to quantify the impact of bioturbating benthic fauna onto ecosystem respiration and oxygen consumption and investigate at larger scale, how microbial metabolic activity and carbon turnover at the water-sediment interface are controlled by sediment physical and chemical properties as well as water temperatures. Numerical modeling confirmed that experimentally identified hotspots of streambed biogeochemical cycling were controlled by patterns of physical properties such as hydraulic conductivities or bioavailability of organic matter, impacting on residence time distributions and hence reaction times. In contrast to previous research, our investigations thus confirmed that small-scale variability of physical and chemical interface properties had a major impact on biogeochemical processing at the investigated ecohydrological interfaces. Our results

  3. Microbial activity and biogeochemical cycling in first-order Russian Arctic streams

    NASA Astrophysics Data System (ADS)

    Rhoades, R. E.; Lynch, L. M.; Ortega, J. C.; Holmes, R. M.; Mann, P. J.; Vonk, J. E.; Schade, J. D.

    2011-12-01

    Global climate change is strongly impacting Arctic ecosystems and is predicted to lead to thawing of permafrost soils. These soils are rich in organic matter and other nutrients and influence biogeochemical cycling in terrestrial and aquatic ecosystems. Small arctic streams are likely to be the first aquatic ecosystems to receive materials exported as soils warm. These first-order streams are characterized by strong interactions between the water column and stream bottom and have the potential to affect nutrient flux. Previous studies suggest that phosphorous availability limits biological productivity in many first-order arctic streams, however, they remain understudied, particularly in the Russian Arctic. Our objective was to assess microbial activity and biogeochemical cycling among arctic streams. We used three approaches to meet our objectives, including a survey of 9 streams, intensive longitudinal sampling in 5 streams, and nutrient pulse addition experiments in 4 streams, designed to assess the potential for limitation by N or P. We measured pH, temperature, dissolved oxygen, NH4, SRP, DOC, and TDN at all sampling sites. We also conducted biological oxygen demand (BOD) incubations designed to assess DOC lability, and correlated these measurements with background nutrient concentrations. We found a strong positive linear correlation between BOD and phosphate concentration, suggesting P limitation of production and/or consumption of labile DOC. To complement ambient stream measurements, we conducted whole stream nutrient addition experiments to calculate N and P uptake lengths, which we then used to infer whether N or P is more likely to limit biological processes, and the degree of coupling between N and P cycling. Results from the nutrient addition experiments suggest both N and P limitation among streams depending on stream location and characteristics. In addition, these experiments suggest a significant, but complex interaction between N and P cycles

  4. Application of a solar UV/chlorine advanced oxidation process to oil sands process-affected water remediation.

    PubMed

    Shu, Zengquan; Li, Chao; Belosevic, Miodrag; Bolton, James R; El-Din, Mohamed Gamal

    2014-08-19

    The solar UV/chlorine process has emerged as a novel advanced oxidation process for industrial and municipal wastewaters. Currently, its practical application to oil sands process-affected water (OSPW) remediation has been studied to treat fresh OSPW retained in large tailings ponds, which can cause significant adverse environmental impacts on ground and surface waters in Northern Alberta, Canada. Degradation of naphthenic acids (NAs) and fluorophore organic compounds in OSPW was investigated. In a laboratory-scale UV/chlorine treatment, the NAs degradation was clearly structure-dependent and hydroxyl radical-based. In terms of the NAs degradation rate, the raw OSPW (pH ∼ 8.3) rates were higher than those at an alkaline condition (pH = 10). Under actual sunlight, direct solar photolysis partially degraded fluorophore organic compounds, as indicated by the qualitative synchronous fluorescence spectra (SFS) of the OSPW, but did not impact NAs degradation. The solar/chlorine process effectively removed NAs (75-84% removal) and fluorophore organic compounds in OSPW in the presence of 200 or 300 mg L(-1) OCl(-). The acute toxicity of OSPW toward Vibrio fischeri was reduced after the solar/chlorine treatment. However, the OSPW toxicity toward goldfish primary kidney macrophages after solar/chlorine treatment showed no obvious toxicity reduction versus that of untreated OSPW, which warrants further study for process optimization.

  5. Isotopes and Isoscapes: Tools for Testing Hydrological and Biogeochemical Models

    NASA Astrophysics Data System (ADS)

    Kendall, C.

    2014-12-01

    In the 21st century, the importance of high quality water resources cannot be overstated. New approaches are needed to pinpoint sources and ages of multiple contaminants, and to better understand critical hydrologic systems. Stable isotopic compositions of materials often show strong spatial and temporal distributions related to combinations of sources and processes. Isoscapes (spatial and/or temporal maps) of riverine and atmospheric data are increasingly being found to be effective means for assessing the effects of different land uses and biogeochemical processes on water resources. Hence, isotopes and isoscapes are a potentially powerful component of monitoring and assessment programs that are aimed at quantifying and mitigating alterations to environments from human activities (anthropogenic disturbances). Locations exhibiting unusually high rates of biogeochemical cycling or elevated pollution levels usually have distinctive isotopic compositions that are suggestive or diagnostic of specific reactions and pollution sources. Isotopes can be more effective at identifying hot spots and hot moments than concentrations alone because isotopic ratios may change even when concentrations do not. Hence, isotopes provide valuable additions to standard chemical and hydrological mass balance methods. This presentation will examine how the field of isotope hydrology has evolved over my 40+ year career as an isotope geochemist, highlight several exciting recent research thrusts, and share some thoughts on future research directions.

  6. Subsurface Biogeochemical Research FY11 Second Quarter Performance Measure

    SciTech Connect

    Scheibe, Timothy D.

    2011-03-31

    The Subsurface Biogeochemical Research (SBR) Long Term Measure for 2011 under the Performance Assessment Rating Tool (PART) measure is to "Refine subsurface transport models by developing computational methods to link important processes impacting contaminant transport at smaller scales to the field scale." The second quarter performance measure is to "Provide a report on computational methods linking genome-enabled understanding of microbial metabolism with reactive transport models to describe processes impacting contaminant transport in the subsurface." Microorganisms such as bacteria are by definition small (typically on the order of a micron in size), and their behavior is controlled by their local biogeochemical environment (typically within a single pore or a biofilm on a grain surface, on the order of tens of microns in size). However, their metabolic activity exerts strong influence on the transport and fate of groundwater contaminants of significant concern at DOE sites, in contaminant plumes with spatial extents of meters to kilometers. This report describes progress and key findings from research aimed at integrating models of microbial metabolism based on genomic information (small scale) with models of contaminant fate and transport in aquifers (field scale).

  7. Global changes in biogeochemical cycles in response to human activities

    NASA Technical Reports Server (NTRS)

    Moore, Berrien, III; Melillo, Jerry

    1994-01-01

    The main objective of our research was to characterize biogeochemical cycles at continental and global scales in both terrestrial and aquatic ecosystems. This characterization applied to both natural ecosystems and those disturbed by human activity. The primary elements of interest were carbon and nitrogen and the analysis sought to quantify standing stocks and dynamic cycling processes. The translocation of major nutrients from the terrestrial landscape to the atmosphere (via trace gases) and to fluvial systems (via leaching, erosional losses, and point source pollution) were of particular importance to this study. Our aim was to develop the first generation of Earth System Models. Our research was organized around the construction and testing of component biogeochemical models which treated terrestrial ecosystem processes, aquatic nutrient transport through drainage basins, and trace gas exchanges at the continental and global scale. A suite of three complementary models were defined within this construct. The models were organized to operate at a 1/2 degree latitude by longitude level of spatial resolution and to execute at a monthly time step. This discretization afforded us the opportunity to understand the dynamics of the biosphere down to subregional scales, while simultaneously placing these dynamics into a global context.

  8. Reversible redox chemistry of quinones: impact on biogeochemical cycles.

    PubMed

    Uchimiya, Minori; Stone, Alan T

    2009-10-01

    The role of quinone biomolecules and quinone moieties of natural organic matter (NOM) as the electron transfer mediator in essential biogeochemical processes such as iron bioreduction and contaminant degradation has received considerable interests in the past decade. Hypothesized electron shuttling mechanism must be evaluated based on the availability and stability of quinones under a given environmental setting. The goal of this review is to examine the source, reactivity, and fate of potential quinone catalysts with respect to chemical interactions (e.g., with other quinones and nucleophiles) that will inevitably occur in complex environmental media. We will first discuss natural and anthropogenic sources of quinones in aqueous environments, and fundamental transformation pathways including cross reaction, autoxidation, and addition reactions. We will then assess how the described sources (molecular structure) and transformation pathways (stability) will impact the ability of a quinone molecule to catalyze a biogeochemical process. Thermodynamics and kinetics of electron transfer reactions with both the electron donor (e.g., hydrogen sulfide as a bulk reductant) and the terminal electron acceptor (e.g., nitroaromatic explosives in contaminant degradation), and stability towards irreversible side reactions are the key factors determining the geochemical conditions under which the catalysis by a quinone molecule will be operative.

  9. Converting copepod vital rates into units appropriate for biogeochemical models

    NASA Astrophysics Data System (ADS)

    Frangoulis, C.; Carlotti, F.; Eisenhauer, L.; Zervoudaki, S.

    2010-01-01

    The conversion of units is one of the difficulties of model parameterisation. Conversion errors may result not only from incorrect choices of conversion factors, but also from incorrect choices of the value itself. In biogeochemical models, mesozooplankton, is the highest trophic level of the food web, and it is very often reduced to a single variable generally considered as a representation of the copepod community, the dominant taxa in mesozooplankton. If this simplifies the information to be obtained for the stock, a correct parameterisation of the processes related to the copepod community is already a tricky task due to the wide range of copepod species, sizes, stages and behaviour. The goal of this paper is to improve the communication between experimentalists and modellers by giving indications for the conversion of copepod vital rates from experimental to biogeochemical model units. This includes the choice of values, conversion factors, terminology distinction and the scale transfer. To begin with, we briefly address the common problem of the conversion of a rate per individual to a rate per mass. Then, we focus on unit conversion problems for each specific rate and give recommendations. Finally, we discuss the problem of scale transfer between the level of organisation at which the rate value is measured at characteristic time and space-scales versus the level of representation of the corresponding process in the model, with its different characteristic time and space-scales .

  10. Study of major factors to affect photoresist profile on developable bottom anti-reflective coating process

    NASA Astrophysics Data System (ADS)

    Roh, Hyo Jung; Ju, Dong Kyu; Kim, Hyun Jin; Kim, Jaehyun

    2011-04-01

    As critical dimensions continue to shrink in lithography, new materials will be needed to meet the new demands imposed by this shrinkage. Recently, there are needs for novel materials with various substrates and immersing process, including double patterning process, a high resolution implant process, and so on. Among such materials, Developable Bottom Anti-reflective Coating material (DBARC) is a good candidate for high resolution implant application as well as double patterning. DBARC should have reflectivity control function as an ordinary BARC, as well as an appropriate solubility in TMAH-based conventional developer after exposure and bake process. The most distinguished advantage of DBARC is to skip BARC etch process that is required in normal BARC process. In spite of this advantage, the photoresist profile on DBARC could be influenced by components and process conditions of DBARC. Several groups have tried to solve this issue to implement DBARC to new process. We have studied material-related factors affecting photoresist profiles, such as a polymer, photo-acid generators (PAGs), and additives. And we explored the effect of process condition for photoresist and DBARC. In case of polymer, we studied the effect of dissolution rate in developer and crosslinking functionality. For PAGs and additives, the effect of acid diffusivity and cross-linking degree according to their bulkiness were examined. We also evaluated coated film stability in a photoresist solvent after BARC bake process and compared lithographic performance of various DBARC formulations. In addition, the effect of photoresist profile with bake condition of photoresist and DBARC were investigated. In this paper, we will demonstrate the most influential factors of DBARC to photoresist profile and suggest the optimum formulation and process condition for DBARC application.

  11. The Use of Mass Balance Investigations in the Study of the Biogeochemical Cycle of Sulfur

    NASA Astrophysics Data System (ADS)

    Evans, H. E.; Dillon, P. J.; Molot, L. A.

    1997-06-01

    The use of mass balances in the investigation of the biogeochemical cycle of sulfur is reviewed for three systems: 1) upland catchments, 2) wetlands, and 3) lakes. In upland catchments, the major inputs of sulfur are via wet and dry atmospheric deposition, whereas outputs or losses occur primarily through volatilization and/or runoff. In addition, sulfur may be stored in vegetation and in the forest floor. In wetlands (particularly peatlands), a large proportion of the sulfur inputs are derived from surface and groundwater originating in the upland system. Because of the fluctuating water table in wetlands, they can act as a source or sink for sulfate, depending on the redox conditions. Wetlands, therefore, can significantly affect input-output budgets for lakes. In most lakes, only a small portion of the sulfate input is retained, (i.e. not lost from the lake via outflow), indicating that there is an excess of sulfate relative to biological needs. Seepage lakes are exceptions to this generalization. Although the reactivity of the sulfate input to many lakes is low, sulfate levels, especially in regions receiving substantial atmospheric sulfur deposition, are high enough that the portion reduced results in substantial in-lake alkalinity production; in fact, in many cases, alkalinity production from sulfate reduction is greater than that resulting from not only other in-lake processes but from external sources (the catchment) as well.The importance of mass balance investigations in elucidating the biogeochemical cycling of sulfur is stressed and the need for additional studies on a whole-system basis stressed.

  12. Dust in the Earth system: the biogeochemical linking of land, air and sea.

    PubMed

    Ridgwell, Andy J

    2002-12-15

    Understanding the response of the Earth's climate system to anthropogenic perturbation has been a pressing priority for society since the late 1980s. However, recent years have seen a major paradigm shift in how such an understanding can be reached. Climate change demands analysis within an integrated 'Earth-system' framework, taken to encompass the suite of interacting physical, chemical, biological and human processes that, in transporting and transforming materials and energy, jointly determine the conditions for life on the whole planet. This is a highly complex system, characterized by multiple nonlinear responses and thresholds, with linkages often between apparently disparate components. The interconnected nature of the Earth system is wonderfully illustrated by the diverse roles played by atmospheric transport of mineral 'dust', particularly in its capacity as a key pathway for the delivery of nutrients essential to plant growth, not only on land, but perhaps more importantly, in the ocean. Dust therefore biogeochemically links land, air and sea. This paper reviews the biogeochemical role of mineral dust in the Earth system and its interaction with climate, and, in particular, the potential importance of both past and possible future changes in aeolian delivery of the micro-nutrient iron to the ocean. For instance, if, in the future, there was to be a widespread stabilization of soils for the purpose of carbon sequestration on land, a reduction in aeolian iron supply to the open ocean would occur. The resultant weakening of the oceanic carbon sink could potentially offset much of the carbon sequestered on land. In contrast, during glacial times, enhanced dust supply to the ocean could have 'fertilized' the biota and driven atmospheric CO(2) lower. Dust might even play an active role in driving climatic change; since changes in dust supply may affect climate, and changes in climate, in turn, influence dust, a 'feedback loop' is formed. Possible feedback

  13. Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes.

    PubMed

    Zhang, Ximei; Johnston, Eric R; Liu, Wei; Li, Linghao; Han, Xingguo

    2016-01-01

    Both 'species fitness difference'-based deterministic processes, such as competitive exclusion and environmental filtering, and 'species fitness difference'-independent stochastic processes, such as birth/death and dispersal/colonization, can influence the assembly of soil microbial communities. However, how both types of processes are mediated by anthropogenic environmental changes has rarely been explored. Here we report a novel and general pattern that almost all anthropogenic environmental changes that took place in a grassland ecosystem affected soil bacterial community assembly primarily through promoting or restraining stochastic processes. We performed four experiments mimicking 16 types of environmental changes and separated the compositional variation of soil bacterial communities caused by each environmental change into deterministic and stochastic components, with a recently developed method. Briefly, because the difference between control and treatment communities is primarily caused by deterministic processes, the deterministic change was quantified as (mean compositional variation between treatment and control) - (mean compositional variation within control). The difference among replicate treatment communities is primarily caused by stochastic processes, so the stochastic change was estimated as (mean compositional variation within treatment) - (mean compositional variation within control). The absolute of the stochastic change was greater than that of the deterministic change across almost all environmental changes, which was robust for both taxonomic and functional-based criterion. Although the deterministic change may become more important as environmental changes last longer, our findings showed that changes usually occurred through mediating stochastic processes over 5 years, challenging the traditional determinism-dominated view.

  14. In vivo disruption of Xenopus U3 snRNA affects ribosomal RNA processing.

    PubMed Central

    Savino, R; Gerbi, S A

    1990-01-01

    DNA oligonucleotide complementary to sequences in the 5' third of U3 snRNA were injected into Xenopus oocyte nuclei to disrupt endogenous U3 snRNA. The effect of this treatment on rRNA processing was examined. We found that some toads have a single rRNA processing pathway, whereas in other toads, two rRNA processing pathways can coexist in a single oocyte. U3 snRNA disruption in toads with the single rRNA processing pathway caused a reduction in 20S and '32S' pre-rRNA. In addition, in toads with two rRNA processing pathways, an increase in '36S' pre-rRNA of the second pathway is observed. This is the first in vivo demonstration that U3 snRNA plays a role in rRNA processing. Cleavage site #3 is at the boundary of ITS 1 and 5.8S and links all of the affected rRNA intermediates: 20S and '32S' are the products of site #3 cleavage in the first pathway and '36S' is the substrate for cleavage at site #3 in the second pathway. We postulate that U3 snRNP folds pre-rRNA into a conformation dictating correct cleavage at processing site #3. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. Fig. 5. Fig. 6. Fig. 7. Fig. 8. PMID:2357971

  15. The Biogeochemical Role of Baleen Whales and Krill in Southern Ocean Nutrient Cycling

    PubMed Central

    Ratnarajah, Lavenia; Bowie, Andrew R.; Lannuzel, Delphine; Meiners, Klaus M.; Nicol, Stephen

    2014-01-01

    The availability of micronutrients is a key factor that affects primary productivity in High Nutrient Low Chlorophyll (HNLC) regions of the Southern Ocean. Nutrient supply is governed by a range of physical, chemical and biological processes, and there are significant feedbacks within the ecosystem. It has been suggested that baleen whales form a crucial part of biogeochemical cycling processes through the consumption of nutrient-rich krill and subsequent defecation, but data on their contribution are scarce. We analysed the concentration of iron, cadmium, manganese, cobalt, copper, zinc, phosphorus and carbon in baleen whale faeces and muscle, and krill tissue using inductively coupled plasma mass spectrometry. Metal concentrations in krill tissue were between 20 thousand and 4.8 million times higher than typical Southern Ocean HNLC seawater concentrations, while whale faecal matter was between 276 thousand and 10 million times higher. These findings suggest that krill act as a mechanism for concentrating and retaining elements in the surface layer, which are subsequently released back into the ocean, once eaten by whales, through defecation. Trace metal to carbon ratios were also higher in whale faeces compared to whale muscle indicating that whales are concentrating carbon and actively defecating trace elements. Consequently, recovery of the great whales may facilitate the recycling of nutrients via defecation, which may affect productivity in HNLC areas. PMID:25469984

  16. The biogeochemical role of baleen whales and krill in Southern Ocean nutrient cycling.

    PubMed

    Ratnarajah, Lavenia; Bowie, Andrew R; Lannuzel, Delphine; Meiners, Klaus M; Nicol, Stephen

    2014-01-01

    The availability of micronutrients is a key factor that affects primary productivity in High Nutrient Low Chlorophyll (HNLC) regions of the Southern Ocean. Nutrient supply is governed by a range of physical, chemical and biological processes, and there are significant feedbacks within the ecosystem. It has been suggested that baleen whales form a crucial part of biogeochemical cycling processes through the consumption of nutrient-rich krill and subsequent defecation, but data on their contribution are scarce. We analysed the concentration of iron, cadmium, manganese, cobalt, copper, zinc, phosphorus and carbon in baleen whale faeces and muscle,