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Sample records for afm imaging techniques

  1. Mapping individual cosmid DNAs by direct AFM imaging.

    PubMed

    Allison, D P; Kerper, P S; Doktycz, M J; Thundat, T; Modrich, P; Larimer, F W; Johnson, D K; Hoyt, P R; Mucenski, M L; Warmack, R J

    1997-05-01

    Individual cosmid clones have been restriction mapped by directly imaging, with the atomic force microscope (AFM), a mutant EcoRI endonuclease site-specifically bound to DNA. Images and data are presented that locate six restriction sites, predicted from gel electrophoresis, on a 35-kb cosmid isolated from mouse chromosome 7. Measured distances between endonuclease molecules bound to lambda DNA, when compared to known values, demonstrate the accuracy of AFM mapping to better than 1%. These results may be extended to identify other important site-specific protein-DNA interactions, such as transcription factor and mismatch repair enzyme binding, difficult to resolve by current techniques.

  2. Simultaneous AFM nano-patterning and imaging for photomask repair

    NASA Astrophysics Data System (ADS)

    Keyvani, Aliasghar; Tamer, Mehmet S.; van Es, Maarten H.; Sadeghian, Hamed

    2016-03-01

    In this paper we present a new AFM based nano-patterning technique that can be used for fast defect repairing of high resolution photomasks and possibly other high-speed nano-patterning applications. The proposed method works based on hammering the sample with tapping mode AFM followed by wet cleaning of the residuals. On the area where a specific pattern should be written, the tip-sample interaction force is tuned in a controlled manner by changing the excitation frequency of the cantilever without interrupting the imaging process. Using this method several patterns where transferred to different samples with imaging speed. While the pattern was transferred to the sample in each tracing scan line, the patterned sample was imaged in retracing scan line, thus the outcome was immediately visible during the experiment.

  3. Image Analysis and Length Estimation of Biomolecules Using AFM

    PubMed Central

    Sundstrom, Andrew; Cirrone, Silvio; Paxia, Salvatore; Hsueh, Carlin; Kjolby, Rachel; Gimzewski, James K.; Reed, Jason; Mishra, Bud

    2014-01-01

    There are many examples of problems in pattern analysis for which it is often possible to obtain systematic characterizations, if in addition a small number of useful features or parameters of the image are known a priori or can be estimated reasonably well. Often, the relevant features of a particular pattern analysis problem are easy to enumerate, as when statistical structures of the patterns are well understood from the knowledge of the domain. We study a problem from molecular image analysis, where such a domain-dependent understanding may be lacking to some degree and the features must be inferred via machine-learning techniques. In this paper, we propose a rigorous, fully automated technique for this problem. We are motivated by an application of atomic force microscopy (AFM) image processing needed to solve a central problem in molecular biology, aimed at obtaining the complete transcription profile of a single cell, a snapshot that shows which genes are being expressed and to what degree. Reed et al. (“Single molecule transcription profiling with AFM,” Nanotechnology, vol. 18, no. 4, 2007) showed that the transcription profiling problem reduces to making high-precision measurements of biomolecule backbone lengths, correct to within 20–25 bp (6–7.5 nm). Here, we present an image processing and length estimation pipeline using AFM that comes close to achieving these measurement tolerances. In particular, we develop a biased length estimator on trained coefficients of a simple linear regression model, biweighted by a Beaton–Tukey function, whose feature universe is constrained by James–Stein shrinkage to avoid overfitting. In terms of extensibility and addressing the model selection problem, this formulation subsumes the models we studied. PMID:22759526

  4. Probing Cytoskeletal Structures by Coupling Optical Superresolution and AFM Techniques for a Correlative Approach

    PubMed Central

    Chacko, Jenu Varghese; Zanacchi, Francesca Cella; Diaspro, Alberto

    2013-01-01

    In this article, we describe and show the application of some of the most advanced fluorescence superresolution techniques, STED AFM and STORM AFM microscopy towards imaging of cytoskeletal structures, such as microtubule filaments. Mechanical and structural properties can play a relevant role in the investigation of cytoskeletal structures of interest, such as microtubules, that provide support to the cell structure. In fact, the mechanical properties, such as the local stiffness and the elasticity, can be investigated by AFM force spectroscopy with tens of nanometers resolution. Force curves can be analyzed in order to obtain the local elasticity (and the Young's modulus calculation by fitting the force curves from every pixel of interest), and the combination with STED/STORM microscopy integrates the measurement with high specificity and yields superresolution structural information. This hybrid modality of superresolution-AFM working is a clear example of correlative multimodal microscopy. PMID:24027190

  5. Mapping site-specific endonuclease binding to DNA by direct imaging with AFM

    SciTech Connect

    Allison, D.P.; Thundat, T.; Doktycz, M.J.; Kerper, P.S.; Warmack, R.J.; Modrich, P.; Isfort, R.J.

    1995-12-31

    Physical mapping of DNA can be accomplished by direct AFM imaging of site specific proteins bound to DNA molecules. Using Gln-111, a mutant of EcoRI endonuclease with a specific affinity for EcoRI sites 1,000 times greater than wild type enzyme but with cleavage rate constants reduced by a factor of 10{sup 4}, the authors demonstrate site-specific mapping by direct AFM imaging. Images are presented showing specific-site binding of Gln-111 to plasmids having either one (pBS{sup +}) or two (pMP{sup 32}) EcoRI sites. Identification of the Gln-111/DNA complex is greatly enhanced by biotinylation of the complex followed by reaction with streptavidin gold prior to imaging. Image enhancement coupled with improvements in the preparation techniques for imaging large DNA molecules, such as lambda DNA (47 kb), has the potential to contribute to direct AFM restriction mapping of cosmid-sized genomic DNAs.

  6. Mapping site-specific endonuclease binding to DNA by direct imaging with atomic force microscopy (AFM)

    NASA Astrophysics Data System (ADS)

    Allison, David P.; Thundat, Thomas G.; Modrich, P.; Isfort, R. J.; Doktycz, Mitchel J.; Kerper, P. S.; Warmack, R. J.

    1995-04-01

    Physical mapping of DNA can be accomplished by direct AFM imaging of site specific proteins bound to DNA molecules. Using Gln-111, a mutant of EcoRI endonuclease with a specific affinity for EcoRI sites 1000 times greater than wild type enzyme but with cleavage rate constants reduced by a factor of 104, we demonstrate site-specific mapping by direct AFM imaging. Images are presented showing specific-site binding of Gln-111 to plasmids having either one (pBS+) or two (pMP32) EcoRI sites. Identification of the Gln-111/DNA complex is greatly enhanced by biotinylation of the complex followed by reaction with streptavidin gold prior to imaging. Image enhancement coupled with improvements in our preparation techniques for imaging large DNA molecules, such as lambda DNA (47 kb), has the potential to contribute to direct AFM restriction mapping of cosmid-sized genomic DNAs.

  7. Mounting of Escherichia coli spheroplasts for AFM imaging.

    SciTech Connect

    Sullivan, Claretta J; Morrell-Falvey, Jennifer L; Allison, David P; Doktycz, Mitchel John

    2005-11-01

    The cytoplasmic membrane of Escherichia coli (E. coli) is the location of numerous, chemically specific transporters and recognition elements. Investigation of this membrane in vivo by atomic force microscopy (AFM) requires removal of the cell wall and stable immobilization of the spheroplast. AFM images demonstrate that spheroplasts can be secured with warm gelatin applied to the mica substrate just before the addition of a spheroplast suspension. The resulting preparation can be repeatedly imaged by AFM over the course of several hours. Confocal fluorescence imaging confirms the association of the spheroplasts with the gelatin layer. Gelatin molecules are known to reorder into a network after heating. Entrapment within this gelatin network is believed to be responsible for the immobilization of spheroplasts on mica.

  8. Fabrication of carbon nanotube AFM probes using the Langmuir-Blodgett technique.

    PubMed

    Lee, Jae-Hyeok; Kang, Won-Seok; Choi, Bung-Sam; Choi, Sung-Wook; Kim, Jae-Ho

    2008-09-01

    Carbon nanotube (CNT)-tipped atomic force microscopy (AFM) probes have shown a significant potential for obtaining high-resolution imaging of nanostructure and biological materials. In this paper, we report a simple method to fabricate single-walled carbon nanotube (SWNT) nanoprobes for AFM using the Langmuir-Blodgett (LB) technique. Thiophenyl-modified SWNTs (SWNT-SHs) through amidation of SWNTs in chloroform allowed to be spread and form a stable Langmuir monolayer at the water/air interface. A simple two-step transfer process was used: (1) dipping conventional AFM probes into the Langmuir monolayer and (2) lifting the probes from the water surface. This results in the attachment of SWNTs onto the tips of AFM nanoprobes. We found that the SWNTs assembled on the nanoprobes were well-oriented and robust enough to maintain their shape and direction even after successive scans. AFM measurements of a nano-porous alumina substrate and deoxyribonucleic acid using SWNT-modified nanoprobes revealed that the curvature diameter of the nanoprobes was less than 3 nm and a fine resolution was obtained than that from conventional AFM probes. We also demonstrate that the LB method is a scalable process capable of simultaneously fabricating a large number of SWNT-modified nanoprobes.

  9. New AFM Techniques for Investigating Molecular Growth Mechanisms of Protein Crystals

    NASA Technical Reports Server (NTRS)

    Li, Huayu; Nadarajah, Arunan; Konnert, John H.; Pusey, Marc L.

    1998-01-01

    Atomic Force Microscopy (AFM) has emerged as a powerful technique for investigating protein crystal growth. Earlier AFM studies were among the first to demonstrate that these crystals grew by dislocation and 2D nucleation growth mechanisms [1]. These investigations were restricted to the micron range where only surface features, such as dislocation hillocks and 2D islands are visible. Most AFM instruments can scan at higher resolutions and have the potential to resolve individual protein molecules at nanometer ranges. Such scans are essential for determining the molecular packing arrangements on crystal faces and for probing the growth process at the molecular level. However, at this resolution the AFM tip influences the image produced, with the resulting image being a convolution of the tip shape and the surface morphology [2]. In most studies this problem is resolved by deconvoluting the image to obtain the true surface morphology. Although deconvolution routines work reasonably well for simple one- dimensional shapes, for complex surfaces this approach does not produce accurate results. In this study we devised a new approach which takes advantage of the precise molecular order of crystal surfaces, combined with the knowledge of individual molecular shapes from the crystallographic data of the protein and the AFM tip shape. This information is used to construct expected theoretical AFM images by convoluting the tip shape with the constructed crystal surface shape for a given surface packing arrangement. By comparing the images from actual AFM scans with the constructed ones for different possible surface packing arrangements, the correct packing arrangement can be conclusively determined. This approach was used in this study to determine the correct one from two possible packing arrangements on (I 10) faces of tetragonal lysozyme crystals. Another novel AFM technique was also devised to measure the dimension of individual growth units of the crystal faces

  10. Fast image scanning method in liquid-AFM without image distortion.

    PubMed

    Choi, Inhee; Kim, Younghun; Kim, Jong Ho; Yang, Young In; Lee, Jeongjin; Lee, Suseung; Hong, Surin; Yi, Jongheop

    2008-11-01

    High speed imaging by atomic force microscopy (AFM) allows one to directly observe the dynamic behavior of a sample surface immersed in liquid media; thus, it has been considered to be an indispensable tool for nanobiotechnology and is used in many research fields, including molecular biology and surface science. For real-time observation of a certain behavior, the high speed imaging technique should be accompanied with a high resolution imaging technique to identify target materials. To improve the image quality at a high scanning rate, we developed a variable-controlled fast scanning method, which originated from the modified squeeze-drag superposition model in liquid media. A collection of non-distorted images was accomplished after proper modification of the operating conditions in a viscous fluid, via the simple handling of loading force and cantilever length. Consequently, a speeded-up AFM imaging process was achieved in the liquid environment at up to 200 µm s(-1), without attachment of additional devices. The reliability of the proposed method was verified by the characterization of a grating sample immersed in three types of liquid media. In addition, the results were visualized for elastic biomolecules submerged in a liquid with high kinematic viscosity. PMID:21832743

  11. Brain Tumor Classification Using AFM in Combination with Data Mining Techniques

    PubMed Central

    Huml, Marlene; Silye, René; Zauner, Gerald

    2013-01-01

    Although classification of astrocytic tumors is standardized by the WHO grading system, which is mainly based on microscopy-derived, histomorphological features, there is great interobserver variability. The main causes are thought to be the complexity of morphological details varying from tumor to tumor and from patient to patient, variations in the technical histopathological procedures like staining protocols, and finally the individual experience of the diagnosing pathologist. Thus, to raise astrocytoma grading to a more objective standard, this paper proposes a methodology based on atomic force microscopy (AFM) derived images made from histopathological samples in combination with data mining techniques. By comparing AFM images with corresponding light microscopy images of the same area, the progressive formation of cavities due to cell necrosis was identified as a typical morphological marker for a computer-assisted analysis. Using genetic programming as a tool for feature analysis, a best model was created that achieved 94.74% classification accuracy in distinguishing grade II tumors from grade IV ones. While utilizing modern image analysis techniques, AFM may become an important tool in astrocytic tumor diagnosis. By this way patients suffering from grade II tumors are identified unambiguously, having a less risk for malignant transformation. They would benefit from early adjuvant therapies. PMID:24062997

  12. Direct visualization of the trimeric structure of the ASIC1a channel, using AFM imaging

    SciTech Connect

    Carnally, Stewart M.; Dev, Harveer S.; Stewart, Andrew P.; Barrera, Nelson P.; Van Bemmelen, Miguel X.; Schild, Laurent; Henderson, Robert M.; Edwardson, J.Michael

    2008-08-08

    There has been confusion about the subunit stoichiometry of the degenerin family of ion channels. Recently, a crystal structure of acid-sensing ion channel (ASIC) 1a revealed that it assembles as a trimer. Here, we used atomic force microscopy (AFM) to image unprocessed ASIC1a bound to mica. We detected a mixture of subunit monomers, dimers and trimers. In some cases, triple-subunit clusters were clearly visible, confirming the trimeric structure of the channel, and indicating that the trimer sometimes disaggregated after adhesion to the mica surface. This AFM-based technique will now enable us to determine the subunit arrangement within heteromeric ASICs.

  13. High spatial resolution surface imaging and analysis of fungal cells using SEM and AFM.

    PubMed

    Kaminskyj, Susan G W; Dahms, Tanya E S

    2008-06-01

    We review the use of scanning electron microscopy (SEM), atomic force microscopy (AFM) and force spectroscopy (FS) for probing the ultrastructure, chemistry, physical characteristics and motion of fungal cells. When first developed, SEM was used to image fixed/dehydrated/gold coated specimens, but here we describe more recent SEM developments as they apply to fungal cells. CryoSEM offers high resolution for frozen fungal samples, whereas environmental SEM allows the analysis of robust samples (e.g. spores) under ambient conditions. Dual beam SEM, the most recently developed, adds manipulation capabilities along with element detection. AFM has similar lateral and better depth resolution compared to SEM, and can image live cells including growing fungal hyphae. FS can analyze cell wall chemistry, elasticity and dynamic cell characteristics. The integration of AFM with optical microscopy will allow examination of individual molecules or cellular structures in the context of fungal cell architecture. SEM and AFM are complementary techniques that are clarifying our understanding of fungal biology. PMID:18068995

  14. Statistical analysis of AFM topographic images of self-assembled quantum dots

    SciTech Connect

    Sevriuk, V. A.; Brunkov, P. N. Shalnev, I. V.; Gutkin, A. A.; Klimko, G. V.; Gronin, S. V.; Sorokin, S. V.; Konnikov, S. G.

    2013-07-15

    To obtain statistical data on quantum-dot sizes, AFM topographic images of the substrate on which the dots under study are grown are analyzed. Due to the nonideality of the substrate containing height differences on the order of the size of nanoparticles at distances of 1-10 {mu}m and the insufficient resolution of closely arranged dots due to the finite curvature radius of the AFM probe, automation of the statistical analysis of their large dot array requires special techniques for processing topographic images to eliminate the loss of a particle fraction during conventional processing. As such a technique, convolution of the initial matrix of the AFM image with a specially selected matrix is used. This makes it possible to determine the position of each nanoparticle and, using the initial matrix, to measure their geometrical parameters. The results of statistical analysis by this method of self-assembled InAs quantum dots formed on the surface of an AlGaAs epitaxial layer are presented. It is shown that their concentration, average size, and half-width of height distribution depend strongly on the In flow and total amount of deposited InAs which are varied within insignificant limits.

  15. Intrinsically high-Q dynamic AFM imaging in liquid with a significantly extended needle tip

    NASA Astrophysics Data System (ADS)

    Minary-Jolandan, Majid; Tajik, Arash; Wang, Ning; Yu, Min-Feng

    2012-06-01

    Atomic force microscope (AFM) probe with a long and rigid needle tip was fabricated and studied for high Q factor dynamic (tapping mode) AFM imaging of samples submersed in liquid. The extended needle tip over a regular commercially available tapping-mode AFM cantilever was sufficiently long to keep the AFM cantilever from submersed in liquid, which significantly minimized the hydrodynamic damping involved in dynamic AFM imaging of samples in liquid. Dynamic AFM imaging of samples in liquid at an intrinsic Q factor of over 100 and an operational frequency of over 200 kHz was demonstrated. The method has the potential to be extended to acquire viscoelastic material properties and provide truly gentle imaging of soft biological samples in physiological environments.

  16. AFM imaging of functionalized double-walled carbon nanotubes.

    PubMed

    Lamprecht, C; Danzberger, J; Lukanov, P; Tîlmaciu, C-M; Galibert, A-M; Soula, B; Flahaut, E; Gruber, H J; Hinterdorfer, P; Ebner, A; Kienberger, F

    2009-07-01

    We present a comparative study of several non-covalent approaches to disperse, debundle and non-covalently functionalize double-walled carbon nanotubes (DWNTs). We investigated the ability of bovine serum albumin (BSA), phospholipids grafted onto amine-terminated polyethylene glycol (PL-PEG(2000)-NH(2)), as well as a combination thereof, to coat purified DWNTs. Topographical imaging with the atomic force microscope (AFM) was used to assess the coating of individual DWNTs and the degree of debundling and dispersion. Topographical images showed that functionalized DWNTs are better separated and less aggregated than pristine DWNTs and that the different coating methods differ in their abilities to successfully debundle and disperse DWNTs. Height profiles indicated an increase in the diameter of DWNTs depending on the functionalization method and revealed adsorption of single molecules onto the nanotubes. Biofunctionalization of the DWNT surface was achieved by coating DWNTs with biotinylated BSA, providing for biospecific binding of streptavidin in a simple incubation step. Finally, biotin-BSA-functionalized DWNTs were immobilized on an avidin layer via the specific avidin-biotin interaction. PMID:19375857

  17. Probing Ternary Solvent Effect in High V(oc) Polymer Solar Cells Using Advanced AFM Techniques.

    PubMed

    Li, Chao; Ding, Yi; Soliman, Mikhael; Lorenzo, Josie; Dhasmana, Nitesh; Chantharasupawong, Panit; Ievlev, Anton V; Gesquiere, Andre J; Tetard, Laurene; Thomas, Jayan

    2016-02-01

    This work describes a simple method to develop a high V(oc) low band gap PSCs. In addition, two new atomic force microscopy (AFM)-based nanoscale characterization techniques to study the surface morphology and physical properties of the structured active layer are introduced. With the help of ternary solvent processing of the active layer and C60 buffer layer, a bulk heterojunction PSC with V(oc) more than 0.9 V and conversion efficiency 7.5% is developed. In order to understand the fundamental properties of the materials ruling the performance of the PSCs tested, AFM-based nanoscale characterization techniques including Pulsed-Force-Mode AFM (PFM-AFM) and Mode-Synthesizing AFM (MSAFM) are introduced. Interestingly, MSAFM exhibits high sensitivity for direct visualization of the donor-acceptor phases in the active layer of the PSCs. Finally, conductive-AFM (cAFM) studies reveal local variations in conductivity in the donor and acceptor phases as well as a significant increase in photocurrent in the PTB7:ICBA sample obtained with the ternary solvent processing. PMID:26807919

  18. Probing ternary solvent effect in high Voc polymer solar cells using advanced AFM techniques

    DOE PAGES

    Li, Chao; Soleman, Mikhael; Lorenzo, Josie; Dhasmana, Nitesh; Chantharasupawong, Panit; Ievlev, Anton; Gesquiere, Andre; Tetard, Laurene; Thomas, Jayan

    2016-01-25

    This work describes a simple method to develop a high Voc low band gap PSCs. In addition, two new atomic force microscopy (AFM)-based nanoscale characterization techniques to study the surface morphology and physical properties of the structured active layer are introduced. With the help of ternary solvent processing of the active layer and C60 buffer layer, a bulk heterojunction PSC with Voc more than 0.9 V and conversion efficiency 7.5% is developed. In order to understand the fundamental properties of the materials ruling the performance of the PSCs tested, AFM-based nanoscale characterization techniques including Pulsed-Force-Mode AFM (PFM-AFM) and Mode-Synthesizing AFMmore » (MSAFM) are introduced. Interestingly, MSAFM exhibits high sensitivity for direct visualization of the donor–acceptor phases in the active layer of the PSCs. Lastly, conductive-AFM (cAFM) studies reveal local variations in conductivity in the donor and acceptor phases as well as a significant increase in photocurrent in the PTB7:ICBA sample obtained with the ternary solvent processing.« less

  19. Piezoresistive AFM cantilevers surpassing standard optical beam deflection in low noise topography imaging

    PubMed Central

    Dukic, Maja; Adams, Jonathan D.; Fantner, Georg E.

    2015-01-01

    Optical beam deflection (OBD) is the most prevalent method for measuring cantilever deflections in atomic force microscopy (AFM), mainly due to its excellent noise performance. In contrast, piezoresistive strain-sensing techniques provide benefits over OBD in readout size and the ability to image in light-sensitive or opaque environments, but traditionally have worse noise performance. Miniaturisation of cantilevers, however, brings much greater benefit to the noise performance of piezoresistive sensing than to OBD. In this paper, we show both theoretically and experimentally that by using small-sized piezoresistive cantilevers, the AFM imaging noise equal or lower than the OBD readout noise is feasible, at standard scanning speeds and power dissipation. We demonstrate that with both readouts we achieve a system noise of ≈0.3 Å at 20 kHz measurement bandwidth. Finally, we show that small-sized piezoresistive cantilevers are well suited for piezoresistive nanoscale imaging of biological and solid state samples in air. PMID:26574164

  20. Piezoresistive AFM cantilevers surpassing standard optical beam deflection in low noise topography imaging

    NASA Astrophysics Data System (ADS)

    Dukic, Maja; Adams, Jonathan D.; Fantner, Georg E.

    2015-11-01

    Optical beam deflection (OBD) is the most prevalent method for measuring cantilever deflections in atomic force microscopy (AFM), mainly due to its excellent noise performance. In contrast, piezoresistive strain-sensing techniques provide benefits over OBD in readout size and the ability to image in light-sensitive or opaque environments, but traditionally have worse noise performance. Miniaturisation of cantilevers, however, brings much greater benefit to the noise performance of piezoresistive sensing than to OBD. In this paper, we show both theoretically and experimentally that by using small-sized piezoresistive cantilevers, the AFM imaging noise equal or lower than the OBD readout noise is feasible, at standard scanning speeds and power dissipation. We demonstrate that with both readouts we achieve a system noise of ≈0.3 Å at 20 kHz measurement bandwidth. Finally, we show that small-sized piezoresistive cantilevers are well suited for piezoresistive nanoscale imaging of biological and solid state samples in air.

  1. Surface characterization and AFM imaging of mixed fibrinogen-surfactant films.

    PubMed

    Hassan, Natalia; Maldonado-Valderrama, Julia; Gunning, A Patrick; Morris, Victor J; Ruso, Juan M

    2011-05-19

    This study describes the adsorption behavior of mixed protein/surfactant systems at the air-water interface: specifically fibrinogen and the fluorinated and hydrogenated surfactants (C(8)FONa, C(8)HONa, and C(12)HONa). Surface tension techniques and atomic force microscopy (AFM) have been combined to investigate the adsorption behavior of these mixed systems. Interfacial rheology showed that fibrinogen has a low dilatational modulus at the air-water interface when compared to other proteins, suggesting the formation of a weak surface network. Fluorinated and hydrogenated surfactants severely decreased the dilatational modulus of the adsorbed fibrinogen film at the air-water interface. These measurements suggest the progressive displacement of fibrinogen from the air-water interface by both types of surfactants. However, in the case of fibrinogen/fluorinated surfactant systems, surface tension and dilatational rheology measurements suggest the formation of complexes with improved surface activity. AFM imaging of fibrinogen in the presence and absence of surfactants provided new information on the structure of mixed surface films, and revealed new features of the interaction of fibrinogen with hydrogenated and fluorinated surfactants. These studies suggest complexes formed between fibrinogen and fluorinated surfactants which are more surface active than fibrinogen, while the absence of interaction between fibrinogen and hydrogenated surfactants (C(8)HONa and C(12)HONa) results in compaction of the surface layer.

  2. Fractal analysis of AFM images of the surface of Bowman's membrane of the human cornea.

    PubMed

    Ţălu, Ştefan; Stach, Sebastian; Sueiras, Vivian; Ziebarth, Noël Marysa

    2015-04-01

    The objective of this study is to further investigate the ultrastructural details of the surface of Bowman's membrane of the human cornea, using atomic force microscopy (AFM) images. One representative image acquired of Bowman's membrane of a human cornea was investigated. The three-dimensional (3-D) surface of the sample was imaged using AFM in contact mode, while the sample was completely submerged in optisol solution. Height and deflection images were acquired at multiple scan lengths using the MFP-3D AFM system software (Asylum Research, Santa Barbara, CA), based in IGOR Pro (WaveMetrics, Lake Oswego, OR). A novel approach, based on computational algorithms for fractal analysis of surfaces applied for AFM data, was utilized to analyze the surface structure. The surfaces revealed a fractal structure at the nanometer scale. The fractal dimension, D, provided quantitative values that characterize the scale properties of surface geometry. Detailed characterization of the surface topography was obtained using statistical parameters, in accordance with ISO 25178-2: 2012. Results obtained by fractal analysis confirm the relationship between the value of the fractal dimension and the statistical surface roughness parameters. The surface structure of Bowman's membrane of the human cornea is complex. The analyzed AFM images confirm a fractal nature of the surface, which is not taken into account by classical surface statistical parameters. Surface fractal dimension could be useful in ophthalmology to quantify corneal architectural changes associated with different disease states to further our understanding of disease evolution.

  3. Quantitative atomic resolution force imaging on epitaxial graphene with reactive and nonreactive AFM probes.

    PubMed

    Boneschanscher, Mark P; van der Lit, Joost; Sun, Zhixiang; Swart, Ingmar; Liljeroth, Peter; Vanmaekelbergh, Daniël

    2012-11-27

    Atomic force microscopy (AFM) images of graphene and graphite show contrast with atomic periodicity. However, the contrast patterns vary depending on the atomic termination of the AFM tip apex and the tip-sample distance, hampering the identification of the atomic positions. Here, we report quantitative AFM imaging of epitaxial graphene using inert (carbon-monoxide-terminated) and reactive (iridium-terminated) tips. The atomic image contrast is markedly different with these tip terminations. With a reactive tip, we observe an inversion from attractive to repulsive atomic contrast with decreasing tip-sample distance, while a nonreactive tip only yields repulsive atomic contrast. We are able to identify the atoms with both tips at any tip-sample distance. This is a prerequisite for future structural and chemical analysis of adatoms, defects, and the edges of graphene nanostructures, crucial for understanding nanoscale graphene devices.

  4. Development of a novel nanoindentation technique by utilizing a dual-probe AFM system

    PubMed Central

    Sahin, Ferat; Yablon, Dalia

    2015-01-01

    Summary A novel instrumentation approach to nanoindentation is described that exhibits improved resolution and depth sensing. The approach is based on a multi-probe scanning probe microscopy (SPM) tool that utilizes tuning-fork based probes for both indentation and depth sensing. Unlike nanoindentation experiments performed with conventional AFM systems using beam-bounce technology, this technique incorporates a second probe system with an ultra-high resolution for depth sensing. The additional second probe measures only the vertical movement of the straight indenter attached to a tuning-fork probe with a high spring constant and it can also be used for AFM scanning to obtain an accurate profiling. Nanoindentation results are demonstrated on silicon, fused silica, and Corning Eagle Glass. The results show that this new approach is viable in terms of accurately characterizing mechanical properties of materials through nanoindentation with high accuracy, and it opens doors to many other exciting applications in the field of nanomechanical characterization. PMID:26665072

  5. A rapid and automated relocation method of an AFM probe for high-resolution imaging

    NASA Astrophysics Data System (ADS)

    Zhou, Peilin; Yu, Haibo; Shi, Jialin; Jiao, Niandong; Wang, Zhidong; Wang, Yuechao; Liu, Lianqing

    2016-09-01

    The atomic force microscope (AFM) is one of the most powerful tools for high-resolution imaging and high-precision positioning for nanomanipulation. The selection of the scanning area of the AFM depends on the use of the optical microscope. However, the resolution of an optical microscope is generally no larger than 200 nm owing to wavelength limitations of visible light. Taking into consideration the two determinants of relocation—relative angular rotation and positional offset between the AFM probe and nano target—it is therefore extremely challenging to precisely relocate the AFM probe to the initial scan/manipulation area for the same nano target after the AFM probe has been replaced, or after the sample has been moved. In this paper, we investigate a rapid automated relocation method for the nano target of an AFM using a coordinate transformation. The relocation process is both simple and rapid; moreover, multiple nano targets can be relocated by only identifying a pair of reference points. It possesses a centimeter-scale location range and nano-scale precision. The main advantages of this method are that it overcomes the limitations associated with the resolution of optical microscopes, and that it is label-free on the target areas, which means that it does not require the use of special artificial markers on the target sample areas. Relocation experiments using nanospheres, DNA, SWCNTs, and nano patterns amply demonstrate the practicality and efficiency of the proposed method, which provides technical support for mass nanomanipulation and detection based on AFM for multiple nano targets that are widely distributed in a large area.

  6. A rapid and automated relocation method of an AFM probe for high-resolution imaging.

    PubMed

    Zhou, Peilin; Yu, Haibo; Shi, Jialin; Jiao, Niandong; Wang, Zhidong; Wang, Yuechao; Liu, Lianqing

    2016-09-30

    The atomic force microscope (AFM) is one of the most powerful tools for high-resolution imaging and high-precision positioning for nanomanipulation. The selection of the scanning area of the AFM depends on the use of the optical microscope. However, the resolution of an optical microscope is generally no larger than 200 nm owing to wavelength limitations of visible light. Taking into consideration the two determinants of relocation-relative angular rotation and positional offset between the AFM probe and nano target-it is therefore extremely challenging to precisely relocate the AFM probe to the initial scan/manipulation area for the same nano target after the AFM probe has been replaced, or after the sample has been moved. In this paper, we investigate a rapid automated relocation method for the nano target of an AFM using a coordinate transformation. The relocation process is both simple and rapid; moreover, multiple nano targets can be relocated by only identifying a pair of reference points. It possesses a centimeter-scale location range and nano-scale precision. The main advantages of this method are that it overcomes the limitations associated with the resolution of optical microscopes, and that it is label-free on the target areas, which means that it does not require the use of special artificial markers on the target sample areas. Relocation experiments using nanospheres, DNA, SWCNTs, and nano patterns amply demonstrate the practicality and efficiency of the proposed method, which provides technical support for mass nanomanipulation and detection based on AFM for multiple nano targets that are widely distributed in a large area. PMID:27559679

  7. Imaging and force measurement of LDL and HDL by AFM in air and liquid

    PubMed Central

    Gan, Chaoye; Ao, Meiying; Liu, Zhanghua; Chen, Yong

    2015-01-01

    The size and biomechanical properties of lipoproteins are tightly correlated with their structures/functions. While atomic force microscopy (AFM) has been used to image lipoproteins the force measurement of these nano-sized particles is missing. We detected that the sizes of LDL and HDL in liquid are close to the commonly known values. The Young’s modulus of LDL or HDL is ∼0.4 GPa which is similar to that of some viral capsids or nanovesicles but greatly larger than that of various liposomes. The adhesive force of LDL or HDL is small (∼200 pN). The comparison of AFM detection in air and liquid was also performed which is currently lacking. Our data may provide useful information for better understanding and AFM detection of lipoproteins. PMID:25893163

  8. Tapping and contact mode imaging of native chromosomes and extraction of genomic DNA using AFM tips

    NASA Astrophysics Data System (ADS)

    Sun, Yingchun; Arakawa, Hideo; Osada, Toshiya; Ikai, Atsushi

    2002-03-01

    It is very important both in medicine and biology to clarify the chromosomal structure to understand its functions. In a standard cytogenetic procedure, chromosomes are often fixed in a mixture of acetic acid and methanol. This process most likely changes the mechanical property of chromosomes. We adopted a method to prepare native and unfixed chromosomes from mouse 3T3 cells and used tapping and contact mode atomic force microscopy (AFM) to image and manipulate them. Modified AFM tips were used to image chromosomes in contact mode in air, and then the chromosome samples were immobilized on a substrate and placed in a buffer solution to pull out DNA-histone complexes from them after they were optimally treated with trypsin. From the AFM images, we could see several bands and granular structures on chromosomes. We obtained force curves indicating long fiber extensions from native chromosomes both with low (in high concentration of NaCl) and high forces (physiological conditions). The result suggested that the degree of chromosome condensation decreased in high concentration of salt. It agrees with the known fact of histone H1 dissociation in a high concentration of salt. We intend to pull out DNA-histone complexes from chromosomes for later molecular operations on them using an AFM.

  9. Study of Thin Oxide Films with NC-AFM: Atomically Resolved Imaging and Beyond

    NASA Astrophysics Data System (ADS)

    Heyde, M.; Simon, G. H.; König, T.

    Results presented in the following show structural analysis of metaloxide surfaces and the extraction of physical quantities from the force field above such a surface by noncontact atomic force microscopy (NC-AFM). The measurements have been performed with our dual mode NC-AFM/STM in ultrahigh vacuum at 5 K. The introduction will be followed by a description of the experimental setup, including the ultrahigh vacuum cryogenic environment and our tuning fork tunneling current and force sensor. The sensor parameters affecting the measurements are given together with an amplitude characterization method. In the next section, a structure determination of ultrathin Alumina/NiAl(110) is shown. Atomic resolution could be achieved throughout both reflection domain unit cells. NC-AFM reveals details of morphological features, interconnections to substrate-film interactions, and comparability to theory also with respect to topographic height. In the last section, we present measurements beyond imaging, namely spectroscopy data taken on thin MgO films grown on Ag(001). Force-distance measurements based on atomically resolved NC-AFM images of these films have been taken. Inequivalent sites could be resolved and their effect on nucleation and adsorption processes is debated. Furthermore, work function shift measurements on different MgO film thicknesses grown on Ag(001) are studied and the impact of this shift on the catalytic properties of adsorbed metal species is discussed.

  10. SEM and AFM images of pyrite surfaces after bioleaching by the indigenous Thiobacillus thiooxidans.

    PubMed

    Liu, H-L; Chen, B-Y; Lan, Y-W; Cheng, Y-C

    2003-09-01

    The bioleaching mechanism of pyrite by the indigenous Thiobacillus thiooxidans was examined with the aid of scanning electron microscopy (SEM) and atomic force microscopy (AFM) images of the pyrite surface. The presence of pyrite eliminated the lag phase during growth of this microorganism. This was due to the stimulatory effect on cell growth of the slight amount of Cu2+ that had leached from the pyrite. Zn2+ was found to be much more readily solubilized than Cu2+. The efficiency of bioleaching was four times higher than that of chemical leaching. SEM images provided evidence of direct cell attachment onto the pyrite surface, thereby enhancing the bioleaching rate. Furthermore, extracellular polymeric substances (EPSs) were found on the pyrite surface after 4 days of oxidation. AFM images showed that the pyrite surface area positively correlated with the oxidation rate. A combination of direct and indirect mechanism is probably responsible for the oxidation of pyrite by T. thiooxidans.

  11. Pattern formation and control in polymeric systems: From Minkowski measures to in situ AFM imaging

    NASA Astrophysics Data System (ADS)

    Jacobs, Karin

    2014-03-01

    Thin liquid polymer films are not only of great technical importance, they also exhibit a variety of dynamical instabilities. Some of them may be desired, some rather not. To analyze and finally control pattern formation, modern thin film theories are as vital as techniques to characterize the morphologies and structures in and on the films. Examples for the latter are atomic force microscopy (AFM) as well as scattering techniques. The talk will introduce into the practical applications of Minkowski measures to characterize patterns and explain what thin film properties (e.g. capillary number, solid/liquid boundary condition, glass transition temperature, chain mobility) can further be extracted including new technical possibilities by AFM and scattering techniques.

  12. Analysis of time-resolved interaction force mode AFM imaging using active and passive probes.

    PubMed

    Giray Oral, Hasan; Parlak, Zehra; Levent Degertekin, F

    2012-09-01

    We present an in-depth analysis of time-resolved interaction force (TRIF) mode imaging for atomic force microscopy (AFM). A nonlinear model of an active AFM probe, performing simultaneous topography and material property imaging on samples with varying elasticity and adhesion is implemented in Simulink®. The model is capable of simulating various imaging modes, probe structures, sample material properties, tip-sample interaction force models, and actuation and feedback schemes. For passive AFM cantilevers, the model is verified by comparing results from the literature. As an example of an active probe, the force sensing integrated readout and active tip (FIRAT) probe is used. Simulation results indicate that the active and damped nature of FIRAT provides a significant level of control over the force applied to the sample, minimizing sample indentation and topography error. Active tip control (ATC) preserves constant contact time during force control for stable contact while preventing the loss of material property information such as elasticity and adhesive force. Simulation results are verified by TRIF mode imaging of the samples with both soft and stiff regions. PMID:22813887

  13. AFM tip characterization by using FFT filtered images of step structures.

    PubMed

    Yan, Yongda; Xue, Bo; Hu, Zhenjiang; Zhao, Xuesen

    2016-01-01

    The measurement resolution of an atomic force microscope (AFM) is largely dependent on the radius of the tip. Meanwhile, when using AFM to study nanoscale surface properties, the value of the tip radius is needed in calculations. As such, estimation of the tip radius is important for analyzing results taken using an AFM. In this study, a geometrical model created by scanning a step structure with an AFM tip was developed. The tip was assumed to have a hemispherical cone shape. Profiles simulated by tips with different scanning radii were calculated by fast Fourier transform (FFT). By analyzing the influence of tip radius variation on the spectra of simulated profiles, it was found that low-frequency harmonics were more susceptible, and that the relationship between the tip radius and the low-frequency harmonic amplitude of the step structure varied monotonically. Based on this regularity, we developed a new method to characterize the radius of the hemispherical tip. The tip radii estimated with this approach were comparable to the results obtained using scanning electron microscope imaging and blind reconstruction methods. PMID:26517548

  14. AFM imaging reveals the tetrameric structure of the TRPM8 channel

    SciTech Connect

    Stewart, Andrew P.; Egressy, Kinga; Lim, Annabel; Edwardson, J. Michael

    2010-04-02

    Several members of the transient receptor potential (TRP) channel superfamily have been shown to assemble as tetramers. Here we have determined the subunit stoichiometry of the transient receptor potential M8 (TRPM8) channel using atomic force microscopy (AFM). TRPM8 channels were isolated from transfected cells, and complexes were formed between the channels and antibodies against a V5 epitope tag present on each subunit. The complexes were then subjected to AFM imaging. A frequency distribution of the molecular volumes of antibody decorated channels had a peak at 1305 nm{sup 3}, close to the expected size of a TRPM8 tetramer. The frequency distribution of angles between pairs of bound antibodies had two peaks, at 93{sup o} and 172{sup o}, confirming that the channel assembles as a tetramer. We suggest that this assembly pattern is common to all members of the TRP channel superfamily.

  15. Nanoscopic imaging of mechanical properties of metal films with magnetic-force-controlled AFM

    NASA Astrophysics Data System (ADS)

    Yamamoto, S.-I.; Yamada, H.; Matsushige, K.; Ishida, T.; Mizutani, W.; Tokumoto, H.

    1999-08-01

    We have succeeded in measuring the Young's moduli of inorganic films with a diamond tip of 160-200 nm in diameter using magnetic-force-controlled atomic force microscopy (MFC-AFM). The measurement of Young's moduli was carried out by detecting the tip amplitude on the sample with an applied force of 20 nN. This technique was applied successfully to obtain Young's moduli mapping of gold islands with 1 nm thickness and nickel films with 10 nm thickness. We obtained an effective spring constant of 3000 N m -1 on gold and 21 000 N m -1 on nickel using MFC-AFM. We could normalize the effective area of the contact radius between the tip and the sample. A value of 350 GPa was derived for the Young's modulus of the nickel film, indicative of the elasticity of native nickel oxide (NiO 2). This shows that the MFC-AFM technique measures the mechanical properties of a thin layer on top of the sample.

  16. A new approach of recognition of ellipsoidal micro- and nanoparticles on AFM images and determination of their sizes

    NASA Astrophysics Data System (ADS)

    Akhmadeev, Albert A.; Salakhov, Myakzyum Kh

    2016-10-01

    In this work we develop an approach of automatic recognition of ellipsoidal particles on the atomic force microscopy (AFM) image and determination of their size, which is based on image segmentation and the surface approximation by ellipsoids. In addition to the comparative simplicity and rapidity of processing, this method allows us to determine the size of particles, the surface of which is not completely visible on the image. The proposed method showed good results on simulated images including noisy ones. Using this algorithm the size distributions of silica particles on experimental AFM images have been determined.

  17. AFM imaging reveals the tetrameric structure of the TRPC1 channel

    SciTech Connect

    Barrera, Nelson P.; Shaifta, Yasin; McFadzean, Ian; Ward, Jeremy P.T.; Henderson, Robert M.; Edwardson, J. Michael . E-mail: jme1000@cam.ac.uk

    2007-07-13

    We have determined the subunit stoichiometry of the transient receptor potential C1 (TRPC1) channel by imaging isolated channels using atomic force microscopy (AFM). A frequency distribution of the molecular volumes of individual channel particles had two peaks, at 170 and 720 nm{sup 3}, corresponding with the expected sizes of TRPC1 monomers and tetramers, respectively. Complexes were formed between TRPC1 channels and antibodies against a V5 epitope tag present on each subunit. The frequency distribution of angles between pairs of bound antibodies had two peaks, at 88{sup o} and 178{sup o}. This result again indicates that the channel assembles as a tetramer.

  18. Identifying and quantifying two ligand-binding sites while imaging native human membrane receptors by AFM

    PubMed Central

    Pfreundschuh, Moritz; Alsteens, David; Wieneke, Ralph; Zhang, Cheng; Coughlin, Shaun R.; Tampé, Robert; Kobilka, Brian K.; Müller, Daniel J.

    2015-01-01

    A current challenge in life sciences is to image cell membrane receptors while characterizing their specific interactions with various ligands. Addressing this issue has been hampered by the lack of suitable nanoscopic methods. Here we address this challenge and introduce multifunctional high-resolution atomic force microscopy (AFM) to image human protease-activated receptors (PAR1) in the functionally important lipid membrane and to simultaneously localize and quantify their binding to two different ligands. Therefore, we introduce the surface chemistry to bifunctionalize AFM tips with the native receptor-activating peptide and a tris-N-nitrilotriacetic acid (tris-NTA) group binding to a His10-tag engineered to PAR1. We further introduce ways to discern between the binding of both ligands to different receptor sites while imaging native PAR1s. Surface chemistry and nanoscopic method are applicable to a range of biological systems in vitro and in vivo and to concurrently detect and localize multiple ligand-binding sites at single receptor resolution. PMID:26561004

  19. Identifying and quantifying two ligand-binding sites while imaging native human membrane receptors by AFM

    NASA Astrophysics Data System (ADS)

    Pfreundschuh, Moritz; Alsteens, David; Wieneke, Ralph; Zhang, Cheng; Coughlin, Shaun R.; Tampé, Robert; Kobilka, Brian K.; Müller, Daniel J.

    2015-11-01

    A current challenge in life sciences is to image cell membrane receptors while characterizing their specific interactions with various ligands. Addressing this issue has been hampered by the lack of suitable nanoscopic methods. Here we address this challenge and introduce multifunctional high-resolution atomic force microscopy (AFM) to image human protease-activated receptors (PAR1) in the functionally important lipid membrane and to simultaneously localize and quantify their binding to two different ligands. Therefore, we introduce the surface chemistry to bifunctionalize AFM tips with the native receptor-activating peptide and a tris-N-nitrilotriacetic acid (tris-NTA) group binding to a His10-tag engineered to PAR1. We further introduce ways to discern between the binding of both ligands to different receptor sites while imaging native PAR1s. Surface chemistry and nanoscopic method are applicable to a range of biological systems in vitro and in vivo and to concurrently detect and localize multiple ligand-binding sites at single receptor resolution.

  20. Emerging Imaging Techniques

    PubMed Central

    McVeigh, Elliot R.

    2007-01-01

    This article reviews recent developments in selected imaging technologies focused on the cardiovascular system. The techniques covered are: ultrasound biomicroscopy (UBM), microSPECT, microPET, near infrared imaging, and quantum dots. For each technique, the basic physical principles are explained and recent example applications demonstrated. PMID:16614313

  1. Absorption Spectroscopy and Imaging from the Visible through Mid-IR with 20 nm Resolution Using AFM probes

    NASA Astrophysics Data System (ADS)

    Centrone, Andrea

    2015-03-01

    Correlated nanoscale composition and optical property maps are important to engineer nanomaterials in applications ranging from photovoltaics to sensing and therapeutics. Wavelengths (λs) from the visible to near-IR probe electronic transitions in materials, providing information regarding band gap and defects while light in mid-IR probes vibrational transitions and provide chemical composition. However, light diffraction limits the lateral resolution of conventional micro-spectroscopic techniques to approximately λ/2, which is insufficient to image nanomaterials. Additionally, the λ-dependent resolution impedes direct comparison of spectral maps from different spectral ranges. Photo Thermal Induced Resonance (PTIR) is a novel technique that circumvents light diffraction by employing an AFM tip as a local detector for measuring light absorption with λ-independent nanoscale resolution. Our PTIR setup combines an AFM microscope with three lasers providing λ-tunability from 500 nm to 16000 nm continuously. The AFM tip transduces locally the sample thermal expansion induced by light absorption into large cantilever oscillations. Local absorption spectra (electronic or vibrational) and maps are obtained recording the amplitude of the tip deflection as a function of λ and position, respectively. The working principles of the PTIR technique will be described first, and nano-patterned polymer samples will be used to evaluate its lateral resolution, sensitivity and linearity. Results show that the PTIR signal intensity is proportional to the local absorbed energy suggesting applicability of this technique for quantitative chemical analysis at nanoscale, at least for thin (less than 1000 nm thick) samples. Additionally, a λ-independent resolution as high as 20 nm is demonstrated across the whole spectral range. In the second part of the talk, PTIR will be applied to image the dark plasmonic resonance of gold Asymmetric Split Ring Resonators (A-SRRs) in the mid

  2. AFM Imaging Reveals Topographic Diversity of Wild Type and Z Variant Polymers of Human α1-Proteinase Inhibitor

    PubMed Central

    Gaczynska, Maria; Karpowicz, Przemyslaw; Stuart, Christine E.; Norton, Malgorzata G.; Teckman, Jeffrey H.; Marszal, Ewa; Osmulski, Pawel A.

    2016-01-01

    α1-Proteinase inhibitor (antitrypsin) is a canonical example of the serpin family member that binds and inhibits serine proteases. The natural metastability of serpins is crucial to carry out structural rearrangements necessary for biological activity. However, the enhanced metastability of the mutant Z variant of antitrypsin, in addition to folding defect, may substantially contribute to its polymerization, a process leading to incurable serpinopathy. The metastability also impedes structural studies on the polymers. There are no crystal structures of Z monomer or any kind of polymers larger than engineered wild type (WT) trimer. Our understanding of polymerization mechanisms is based on biochemical data using in vitro generated WT oligomers and molecular simulations. Here we applied atomic force microscopy (AFM) to compare topography of monomers, in vitro formed WT oligomers, and Z type polymers isolated from transgenic mouse liver. We found the AFM images of monomers closely resembled an antitrypsin outer shell modeled after the crystal structure. We confirmed that the Z variant demonstrated higher spontaneous propensity to dimerize than WT monomers. We also detected an unexpectedly broad range of different types of polymers with periodicity and topography depending on the applied method of polymerization. Short linear oligomers of unit arrangement similar to the Z polymers were especially abundant in heat-treated WT preparations. Long linear polymers were a prominent and unique component of liver extracts. However, the liver preparations contained also multiple types of oligomers of topographies undistinguishable from those found in WT samples polymerized with heat, low pH or guanidine hydrochloride treatments. In conclusion, we established that AFM is an excellent technique to assess morphological diversity of antitrypsin polymers, which is important for etiology of serpinopathies. These data also support previous, but controversial models of in vivo

  3. AFM Imaging Reveals Topographic Diversity of Wild Type and Z Variant Polymers of Human α1-Proteinase Inhibitor

    DOE PAGES

    Gaczynska, Maria; Karpowicz, Przemyslaw; Stuart, Christine E.; Norton, Malgorzata G.; Teckman, Jeffrey H.; Marszal, Ewa; Osmulski, Pawel A.

    2016-03-23

    α1-Proteinase inhibitor (antitrypsin) is a canonical example of the serpin family member that binds and inhibits serine proteases. The natural metastability of serpins is crucial to carry out structural rearrangements necessary for biological activity. However, the enhanced metastability of the mutant Z variant of antitrypsin, in addition to folding defect, may substantially contribute to its polymerization, a process leading to incurable serpinopathy. The metastability also impedes structural studies on the polymers. There are no crystal structures of Z monomer or any kind of polymers larger than engineered wild type (WT) trimer. Our understanding of polymerization mechanisms is based on biochemicalmore » data using in vitro generated WT oligomers and molecular simulations. Here we applied atomic force microscopy (AFM) to compare topography of monomers, in vitro formed WT oligomers, and Z type polymers isolated from transgenic mouse liver. We found the AFM images of monomers closely resembled an antitrypsin outer shell modeled after the crystal structure. We confirmed that the Z variant demonstrated higher spontaneous propensity to dimerize than WT monomers. We also detected an unexpectedly broad range of different types of polymers with periodicity and topography depending on the applied method of polymerization. Short linear oligomers of unit arrangement similar to the Z polymers were especially abundant in heat-treated WT preparations. Long linear polymers were a prominent and unique component of liver extracts. However, the liver preparations contained also multiple types of oligomers of topographies undistinguishable from those found inWT samples polymerized with heat, low pH or guanidine hydrochloride treatments. In conclusion, we established that AFM is an excellent technique to assess morphological diversity of antitrypsin polymers, which is important for etiology of serpinopathies. These data also support previous, but controversial models of in vivo

  4. Phase-Imaging with a Sharpened Multi-Walled Carbon Nanotube AFM Tip: Investigation of Low-k Dielectric Polymer Hybrids

    NASA Technical Reports Server (NTRS)

    Nguyen, Cattien V.; Stevens, Ramsey M.; Meyyappan, M.; Volksen, Willi; Miller, Robert D.

    2005-01-01

    Phase shift tapping mode scanning force microscopy (TMSFM) has evolved into a very powerful technique for the nanoscale surface characterization of compositional variations in heterogeneous samples. Phase shift signal measures the difference between the phase angle of the excitation signal and the phase angle of the cantilever response. The signal correlates to the tip-sample inelastic interactions, identifying the different chemical and/or physical property of surfaces. In general, the resolution and quality of scanning probe microscopic images are highly dependent on the size of the scanning probe tip. In improving AFM tip technology, we recently developed a technique for sharpening the tip of a multi-walled carbon nanotube (CNT) AFM tip, reducing the radius of curvature of the CNT tip to less than 5 nm while still maintaining the inherent stability of multi-walled CNT tips. Herein we report the use of sharpened (CNT) AFM tips for phase-imaging of polymer hybrids, a precursor for generating nanoporous low-k dielectrics for on-chip interconnect applications. Using sharpened CNT tips, we obtained phase-contrast images having domains less than 10 nm. In contrast, conventional Si tips and unsharpened CNT tips (radius greater than 15 nm) were not able to resolve the nanoscale domains in the polymer hybrid films. C1early, the size of the CNT tip contributes significantly to the resolution of phase-contrast imaging. In addition, a study on the nonlinear tapping dynamics of the multi-walled CNT tip indicates that the multi-walled CNT tip is immune to conventional imaging instabilities related to the coexistence of attractive and repulsive tapping regimes. This factor may also contribute to the phase-contrast image quality of multi-walled CNT AFM tips. This presentation will also offer data in support of the stability of the CNT tip for phase shift TMSFM.

  5. BOREAS AFM-6 NOAA/ETL 35 GHz Cloud/Turbulence Radar GIF Images

    NASA Technical Reports Server (NTRS)

    Martner, Brooks E.; Newcomer, Jeffrey A. (Editor); Hall, Forrest G.; Smith, David E. (Technical Monitor)

    2000-01-01

    The Boreal Ecosystem-Atmosphere Study (BOREAS) Airborne Fluxes and Meteorology (AFM)-6 team from the National Oceanic and Atmospheric Administration/Environment Technology Laboratory (NOAA/ETL) operated a 35-GHz cloud-sensing radar in the Northern Study Area (NSA) near the Old Jack Pine (OJP) tower from 16 Jul 1994 to 08 Aug 1994. This data set contains a time series of GIF images that show the structure of the lower atmosphere. The NOAA/ETL 35-GHz cloud/turbulence radar GIF images are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files are available on a CD-ROM (see document number 20010000884).

  6. Image compression technique

    DOEpatents

    Fu, C.Y.; Petrich, L.I.

    1997-03-25

    An image is compressed by identifying edge pixels of the image; creating a filled edge array of pixels each of the pixels in the filled edge array which corresponds to an edge pixel having a value equal to the value of a pixel of the image array selected in response to the edge pixel, and each of the pixels in the filled edge array which does not correspond to an edge pixel having a value which is a weighted average of the values of surrounding pixels in the filled edge array which do correspond to edge pixels; and subtracting the filled edge array from the image array to create a difference array. The edge file and the difference array are then separately compressed and transmitted or stored. The original image is later reconstructed by creating a preliminary array in response to the received edge file, and adding the preliminary array to the received difference array. Filling is accomplished by solving Laplace`s equation using a multi-grid technique. Contour and difference file coding techniques also are described. The techniques can be used in a method for processing a plurality of images by selecting a respective compression approach for each image, compressing each of the images according to the compression approach selected, and transmitting each of the images as compressed, in correspondence with an indication of the approach selected for the image. 16 figs.

  7. Image compression technique

    DOEpatents

    Fu, Chi-Yung; Petrich, Loren I.

    1997-01-01

    An image is compressed by identifying edge pixels of the image; creating a filled edge array of pixels each of the pixels in the filled edge array which corresponds to an edge pixel having a value equal to the value of a pixel of the image array selected in response to the edge pixel, and each of the pixels in the filled edge array which does not correspond to an edge pixel having a value which is a weighted average of the values of surrounding pixels in the filled edge array which do correspond to edge pixels; and subtracting the filled edge array from the image array to create a difference array. The edge file and the difference array are then separately compressed and transmitted or stored. The original image is later reconstructed by creating a preliminary array in response to the received edge file, and adding the preliminary array to the received difference array. Filling is accomplished by solving Laplace's equation using a multi-grid technique. Contour and difference file coding techniques also are described. The techniques can be used in a method for processing a plurality of images by selecting a respective compression approach for each image, compressing each of the images according to the compression approach selected, and transmitting each of the images as compressed, in correspondence with an indication of the approach selected for the image.

  8. Combined quantitative ultrasonic and time-resolved interaction force AFM imaging

    SciTech Connect

    Parlak, Z.; Degertekin, F. L.

    2011-01-15

    The authors describe a method where quantitative ultrasonic atomic force microscopy (UAFM) is achieved during time-resolved interaction force (TRIF) imaging in intermittent contact mode. The method uses a calibration procedure for quantitative UAFM. It improves elasticity measurements of stiff regions of surfaces while retaining the capabilities of the TRIF mode for topography, adhesion, dissipation, and elasticity measurements on soft regions of sample surfaces. This combination is especially advantageous when measuring and imaging samples with broad stiffness range in a nondestructive manner. The experiments utilize an active AFM probe with high bandwidth and the UAFM calibration is performed by measuring the magnitude of the time-resolved UAFM signal at a judiciously chosen frequency for different contact stiffness values during individual taps. Improved sensitivity to stiff surface elasticity is demonstrated on a special sample. The results show that combining UAFM with TRIF provides 2.5 GPa (5%) standard deviation on the silicon surface reduced Young's modulus, representing 5x improvement over using only TRIF mode imaging.

  9. Tracer kinetic modeling of [(11)C]AFM, a new PET imaging agent for the serotonin transporter.

    PubMed

    Naganawa, Mika; Nabulsi, Nabeel; Planeta, Beata; Gallezot, Jean-Dominique; Lin, Shu-Fei; Najafzadeh, Soheila; Williams, Wendol; Ropchan, Jim; Labaree, David; Neumeister, Alexander; Huang, Yiyun; Carson, Richard E

    2013-12-01

    [(11)C]AFM, or [(11)C]2-[2-(dimethylaminomethyl)phenylthio]-5-fluoromethylphenylamine, is a new positron emission tomography (PET) radioligand with high affinity and selectivity for the serotonin transporter (SERT). The purpose of this study was to determine the most appropriate kinetic model to quantify [(11)C]AFM binding in the healthy human brain. Positron emission tomography data and arterial input functions were acquired from 10 subjects. Compartmental modeling and the multilinear analysis-1(MA1) method were tested using the arterial input functions. The one-tissue model showed a lack of fit in low-binding regions, and the two-tissue model failed to estimate parameters reliably. Regional time-activity curves were well described by MA1. The rank order of [(11)C]AFM binding potential (BPND) matched well with the known regional SERT densities. For routine use of [(11)C]AFM, several noninvasive methods for quantification of regional binding were evaluated, including simplified reference tissue models (SRTM and SRTM2), and multilinear reference tissue models (MRTM and MRTM2). The best methods for region of interest (ROI) analysis were MA1, MRTM2, and SRTM2, with fixed population kinetic values ( or b') for the reference methods. The MA1 and MRTM2 methods were best for parametric imaging. These results showed that [(11)C]AFM is a suitable PET radioligand to image and quantify SERT in humans. PMID:23921898

  10. Studying Chemical Reactions, One Bond at a Time, with Single Molecule AFM Techniques

    NASA Astrophysics Data System (ADS)

    Fernandez, Julio M.

    2008-03-01

    atomic force microscopy (AFM) techniques, as shown here, can probe dynamic rearrangements within an enzyme's active site which cannot be resolved with any other current structural biological technique. Furthermore, our work at the single bond level directly demonstrates that thiol/disulfide exchange in proteins is a force-dependent chemical reaction. Our findings suggest that mechanical force plays a role in disulfide reduction in vivo, a property which has never been explored by traditional biochemistry. 1.-Wiita, A.P., Ainavarapu, S.R.K., Huang, H.H. and Julio M. Fernandez (2006) Force-dependent chemical kinetics of disulfide bond reduction observed with single molecule techniques. Proc Natl Acad Sci U S A. 103(19):7222-7 2.-Wiita, A.P., Perez-Jimenez, R., Walther, K.A., Gräter, F. Berne, B.J., Holmgren, A., Sanchez-Ruiz, J.M., and Fernandez, J.M. (2007) Probing the chemistry of thioredoxin catalysis with force. Nature, 450:124-7.

  11. Beyond topography - enhanced imaging of cometary dust with the MIDAS AFM

    NASA Astrophysics Data System (ADS)

    Bentley, M. S.; Torkar, K.; Jeszenszky, H.; Romstedt, J.

    2013-09-01

    The MIDAS atomic force microscope (AFM) onboard the Rosetta spacecraft is primarily designed to return the 3D shape and structure of cometary dust particles collected at comet 67P/Churyumov-Gerasimenko [1]. Commercial AFMs have, however, been further developed to measure many other sample properties. The possibilities to make such measurements with MIDAS are explored here.

  12. Two-Dimensional Measurement of n+-p Asymmetrical Junctions in Multicrystalline Silicon Solar Cells Using AFM-Based Electrical Techniques with Nanometer Resolution: Preprint

    SciTech Connect

    Jiang, C. S.; Moutinho, H. R.; Li, J. V.; Al-Jassim, M. M.; Heath, J. T.

    2011-07-01

    Lateral inhomogeneities of modern solar cells demand direct electrical imaging with nanometer resolution. We show that atomic force microscopy (AFM)-based electrical techniques provide unique junction characterizations, giving a two-dimensional determination of junction locations. Two AFM-based techniques, scanning capacitance microscopy/spectroscopy (SCM/SCS) and scanning Kelvin probe force microscopy (SKPFM), were significantly improved and applied to the junction characterizations of multicrystalline silicon (mc-Si) cells. The SCS spectra were taken pixel by pixel by precisely controlling the tip positions in the junction area. The spectra reveal distinctive features that depend closely on the position relative to the electrical junction, which allows us to indentify the electrical junction location. In addition, SKPFM directly probes the built-in potential over the junction area modified by the surface band bending, which allows us to deduce the metallurgical junction location by identifying a peak of the electric field. Our results demonstrate resolutions of 10-40 nm, depending on the techniques (SCS or SKPFM). These direct electrical measurements with nanometer resolution and intrinsic two-dimensional capability are well suited for investigating the junction distribution of solar cells with lateral inhomogeneities.

  13. [Progress in imaging techniques].

    PubMed

    Mishima, Kazuaki; Otsuka, Tsukasa

    2013-05-01

    Today it is common to perform real-time diagnosis and treatment via live broadcast as a method of education and to spread new technology for diagnosis and therapy in medical fields. Live medical broadcasts have developed along with broadcast technology. In the early days, live video feeds were sent from operating rooms to classrooms and lecture halls in universities and hospitals. However, the development of imaging techniques and communication networks enabled live broadcasts that bi-directionally link operating rooms and meeting halls during scientific meetings and live demonstration courses. Live broadcasts therefore became an important method for education and the dissemination of new medical technologies. The development of imaging techniques has contributed to more realistic live broadcasts through such innovative techniques as three-dimensional viewing and higher-definition 4K technology. In the future, live broadcasts will be transmitted on personal computers using regular Internet connections. In addition to the enhancement of image delivery technology, it will also be necessary to examine the entire image delivery environment carefully, including issues of security and privacy of personal information.

  14. [Progress in imaging techniques].

    PubMed

    Mishima, Kazuaki; Otsuka, Tsukasa

    2013-05-01

    Today it is common to perform real-time diagnosis and treatment via live broadcast as a method of education and to spread new technology for diagnosis and therapy in medical fields. Live medical broadcasts have developed along with broadcast technology. In the early days, live video feeds were sent from operating rooms to classrooms and lecture halls in universities and hospitals. However, the development of imaging techniques and communication networks enabled live broadcasts that bi-directionally link operating rooms and meeting halls during scientific meetings and live demonstration courses. Live broadcasts therefore became an important method for education and the dissemination of new medical technologies. The development of imaging techniques has contributed to more realistic live broadcasts through such innovative techniques as three-dimensional viewing and higher-definition 4K technology. In the future, live broadcasts will be transmitted on personal computers using regular Internet connections. In addition to the enhancement of image delivery technology, it will also be necessary to examine the entire image delivery environment carefully, including issues of security and privacy of personal information. PMID:23789334

  15. Image Improvement Techniques

    NASA Astrophysics Data System (ADS)

    Shine, R. A.

    1997-05-01

    Over the last decade, a repertoire of techniques have been developed and/or refined to improve the quality of high spatial resolution solar movies taken from ground based observatories. These include real time image motion corrections, frame selection, phase diversity measurements of the wavefront, and extensive post processing to partially remove atmospheric distortion. Their practical application has been made possible by the increasing availability and decreasing cost of large CCD's with fast digital readouts and high speed computer workstations with large memories. Most successful have been broad band (0.3 to 10 nm) filtergram movies which can use exposure times of 10 to 30 ms, short enough to ``freeze'' atmospheric motions. Even so, only a handful of movies with excellent image quality for more than a hour have been obtained to date. Narrowband filtergrams (about 0.01 nm), such as those required for constructing magnetograms and Dopplergrams, have been more challenging although some single images approach the quality of the best continuum images. Some promising new techniques and instruments, together with persistence and good luck, should continue the progress made in the last several years.

  16. Radiation pressure excitation of Low Temperature Atomic Force & Magnetic Force Microscope (LT-AFM/MFM) for Imaging

    NASA Astrophysics Data System (ADS)

    Karci, Ozgur; Celik, Umit; Oral, Ahmet; NanoMagnetics Instruments Ltd. Team; Middle East Tech Univ Team

    2015-03-01

    We describe a novel method for excitation of Atomic Force Microscope (AFM) cantilevers by means of radiation pressure for imaging in an AFM for the first time. Piezo excitation is the most common method for cantilever excitation, but it may cause spurious resonance peaks. A fiber optic interferometer with 1310 nm laser was used both to measure the deflection of cantilever and apply a force to the cantilever in a LT-AFM/MFM from NanoMagnetics Instruments. The laser power was modulated at the cantilever`s resonance frequency by a digital Phase Lock Loop (PLL). The force exerted by the radiation pressure on a perfectly reflecting surface by a laser beam of power P is F = 2P/c. We typically modulate the laser beam by ~ 800 μW and obtain 10nm oscillation amplitude with Q ~ 8,000 at 2.5x10-4 mbar. The cantilever's stiffness can be accurately calibrated by using the radiation pressure. We have demonstrated performance of the radiation pressure excitation in AFM/MFM by imaging a hard disk sample between 4-300K and Abrikosov vortex lattice in BSCCO single crystal at 4K to for the first time.

  17. Determining the mechanical properties of electrospun poly-ε-caprolactone (PCL) nanofibers using AFM and a novel fiber anchoring technique.

    PubMed

    Baker, Stephen R; Banerjee, Soham; Bonin, Keith; Guthold, Martin

    2016-02-01

    Due to its low cost, biocompatibility and slow bioresorption, poly-ε-caprolactone (PCL) continues to be a suitable material for select biomedical engineering applications. We used a combined atomic force microscopy (AFM)/optical microscopy technique to determine key mechanical properties of individual electrospun PCL nanofibers with diameters between 440-1040nm. Compared to protein nanofibers, PCL nanofibers showed much lower adhesion, as they slipped on the substrate when mechanically manipulated. We, therefore, first developed a novel technique to anchor individual PCL nanofibers to micrometer-sized ridges on a substrate, and then mechanically tested anchored nanofibers. When held at constant strain, tensile stress relaxed with fast and slow relaxation times of 1.0±0.3s and 8.8±3.1s, respectively. The total tensile modulus was 62±26MPa, the elastic (non-relaxing) component of the tensile modulus was 53±36MPa. Individual PCL fibers could be stretched elastically (without permanent deformation) to strains of 19-23%. PCL nanofibers are rather extensible; they could be stretched to a strain of at least 98%, and a tensile strength of at least 12MPa, before they slipped off the AFM tip. PCL nanofibers that had aged for over a month at ambient conditions became stiffer and less elastic. Our technique provides accurate nanofiber mechanical data, which are needed to guide construction of scaffolds for cells and other biomedical devices. PMID:26652365

  18. A review of the application of atomic force microscopy (AFM) in food science and technology.

    PubMed

    Liu, Shaoyang; Wang, Yifen

    2011-01-01

    Atomic force microscopy (AFM) is a powerful nanoscale analysis technique used in food area. This versatile technique can be used to acquire high-resolution sample images and investigate local interactions in air or liquid surroundings. In this chapter, we explain the principles of AFM and review representative applications of AFM in gelatin, casein micelle, carrageenan, gellan gum, starch, and interface. We elucidate new knowledge revealed with AFM as well as ways to use AFM to obtain morphology and rheology information in different food fields.

  19. Diversity imaging techniques in lidar

    NASA Technical Reports Server (NTRS)

    Schultz, K. I.

    1992-01-01

    Diversity imaging techniques have been successfully employed in conventional microwave range-Doppler imaging radars to obtain high resolution images of both natural and man-made targets. These techniques allow microwave radars to achieve image resolution which would otherwise require excessively large antennas. Recent advances in coherent laser radar techniques and signal processing have led to the development of range-Doppler imaging laser radars. While much of the theory and signal processing techniques used in microwave radars can be brought to bear on laser radars, the significant difference in wavelength results in issues peculiar to laser radar systems. Both the fundamental concepts and specific applications of diversity imaging techniques applied to laser radar imaging systems will be discussed. Angle, frequency, and bistatic angle degrees of freedom can be employed in a coherent laser radar imaging system to achieve image resolution which exceeds the traditional Rayleigh criterion associated with the receive aperture. In diversity imaging, angle and frequency degrees of freedom can be used to synthesize an effective aperture providing range and Doppler target information. The ability to vary the bistatic angle provides an additional means of synthesizing an effective aperture. Both simulated and experimentally obtained laser radar images of spinning and/or tumbling objects utilizing both angular and frequency diversity will be presented. In coherent laser radar systems, image quality can be dominated by laser speckle effects. In particular, the signal-to-noise ratio (SNR) of a coherent laser radar image is at most unity in the presence of fully developed speckle. Diversity techniques can be utilized to improve the image SNR; simple incoherent averaging of images utilizing temporal and polarization degrees of freedom can significantly improve image SNR. Both the SNR and image resolution (as defined by the synthetic aperture) contribute to image quality. The

  20. Bi-stability of amplitude modulation AFM in air: deterministic and stochastic outcomes for imaging biomolecular systems.

    PubMed

    Santos, Sergio; Barcons, Victor; Font, Josep; Thomson, Neil H

    2010-06-01

    The dynamics of the oscillating microcantilever for amplitude modulation atomic force microscopy (AM AFM) operating in air is well understood theoretically but the experimental outcomes are still emerging. We use double-stranded DNA on mica as a model biomolecular system for investigating the connection between theory and experiment. A demonstration that the switching between the two cantilever oscillation states is stochastic in nature is achieved, and it can be induced by means of topographical anomalies on the surface. Whether one or the other attractor basin is accessed depends on the tip-sample separation history used to achieve the imaging conditions, and we show that the behaviour is reproducible when the tip is stable and well characterized. Emergence of background noise occurs in certain regions of parameter space regardless of whether two cantilever oscillation states coexist. The low state has been explored in detail and we note that at low to intermediate values of the free amplitude, noise-free imaging is achieved. The outcomes shown here are general and demonstrate that a thorough and systematic experimental approach in conjunction with standard modelling gives insight into the mechanisms behind image contrast formation in AM AFM in air. PMID:20453275

  1. Bi-stability of amplitude modulation AFM in air: deterministic and stochastic outcomes for imaging biomolecular systems.

    PubMed

    Santos, Sergio; Barcons, Victor; Font, Josep; Thomson, Neil H

    2010-06-01

    The dynamics of the oscillating microcantilever for amplitude modulation atomic force microscopy (AM AFM) operating in air is well understood theoretically but the experimental outcomes are still emerging. We use double-stranded DNA on mica as a model biomolecular system for investigating the connection between theory and experiment. A demonstration that the switching between the two cantilever oscillation states is stochastic in nature is achieved, and it can be induced by means of topographical anomalies on the surface. Whether one or the other attractor basin is accessed depends on the tip-sample separation history used to achieve the imaging conditions, and we show that the behaviour is reproducible when the tip is stable and well characterized. Emergence of background noise occurs in certain regions of parameter space regardless of whether two cantilever oscillation states coexist. The low state has been explored in detail and we note that at low to intermediate values of the free amplitude, noise-free imaging is achieved. The outcomes shown here are general and demonstrate that a thorough and systematic experimental approach in conjunction with standard modelling gives insight into the mechanisms behind image contrast formation in AM AFM in air.

  2. Unspecific membrane protein-lipid recognition: combination of AFM imaging, force spectroscopy, DSC and FRET measurements.

    PubMed

    Borrell, Jordi H; Montero, M Teresa; Morros, Antoni; Domènech, Òscar

    2015-11-01

    In this work, we will describe in quantitative terms the unspecific recognition between lactose permease (LacY) of Escherichia coli, a polytopic model membrane protein, and one of the main components of the inner membrane of this bacterium. Supported lipid bilayers of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE) and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol (POPG) (3:1, mol/mol) in the presence of Ca(2+) display lateral phase segregation that can be distinguished by atomic force microscopy (AFM) as well as force spectroscopy. LacY shows preference for fluid (Lα) phases when it is reconstituted in POPE : POPG (3:1, mol/mol) proteoliposomes at a lipid-to-protein ratio of 40. When the lipid-to-protein ratio is decreased down to 0.5, two domains can be distinguished by AFM. While the upper domain is formed by self-segregated units of LacY, the lower domain is constituted only by phospholipids in gel (Lβ) phase. On the one hand, classical differential scanning calorimetry (DSC) measurements evidenced the segregation of a population of phospholipids and point to the existence of a boundary region at the lipid-protein interface. On the other hand, Förster Resonance Energy Transfer (FRET) measurements in solution evidenced that POPE is selectively recognized by LacY. A binary pseudophase diagram of POPE : POPG built from AFM observations enables to calculate the composition of the fluid phase where LacY is inserted. These results are consistent with a model where POPE constitutes the main component of the lipid-LacY interface segregated from the fluid bulk phase where POPG predominates.

  3. In Situ AFM Imaging of Solid Electrolyte Interfaces on HOPG with Ethylene Carbonate and Fluoroethylene Carbonate-Based Electrolytes.

    PubMed

    Shen, Cai; Wang, Shuwei; Jin, Yan; Han, Wei-Qiang

    2015-11-18

    Chemical and morphological structure of solid electrolyte interphase (SEI) plays a vital role in lithium-ion battery (LIB), especially for its cyclability and safety. To date, research on SEI is quite limited because of the complexity of SEI and lack of effective in situ characterization techniques. Here, we present real-time views of SEI morphological evolution using electrochemical atomic force microscopy (EC-AFM). Complemented by an ex situ XPS analysis, fundamental differences of SEI formation from ethylene carbonate (EC) and fluoroethylene carbonate (FEC)-based electrolytes during first lithiation/delithiation cycle on HOPG electrode surface were revealed.

  4. Sensor image prediction techniques

    NASA Astrophysics Data System (ADS)

    Stenger, A. J.; Stone, W. R.; Berry, L.; Murray, T. J.

    1981-02-01

    The preparation of prediction imagery is a complex, costly, and time consuming process. Image prediction systems which produce a detailed replica of the image area require the extensive Defense Mapping Agency data base. The purpose of this study was to analyze the use of image predictions in order to determine whether a reduced set of more compact image features contains enough information to produce acceptable navigator performance. A job analysis of the navigator's mission tasks was performed. It showed that the cognitive and perceptual tasks he performs during navigation are identical to those performed for the targeting mission function. In addition, the results of the analysis of his performance when using a particular sensor can be extended to the analysis of this mission tasks using any sensor. An experimental approach was used to determine the relationship between navigator performance and the type of amount of information in the prediction image. A number of subjects were given image predictions containing varying levels of scene detail and different image features, and then asked to identify the predicted targets in corresponding dynamic flight sequences over scenes of cultural, terrain, and mixed (both cultural and terrain) content.

  5. Structural and Mechanical Mechanisms of Ocular Tissues Probed by AFM

    NASA Astrophysics Data System (ADS)

    Ziebarth, Noël M.; Rico, Felix; Moy, Vincent T.

    In recent years, the atomic force microscope (AFM) has become an important tool in ophthalmic research. It has gained popularity largely because AFM is not restricted by the diffraction limits of light microscopy and can be applied to resolve images with molecular resolution. AFM is a minimally invasive technique and can be used to visualize molecular structures under near-physiological conditions. In addition, the AFM can be employed as a force apparatus to characterize the viscoelastic properties of biomaterials on the micron level and at the level of individual proteins. In this article, we summarize recent AFM studies of ocular tissues, while highlighting the great potential of AFM technology in ophthalmic research. Previous research demonstrates the versatility of the AFM as high resolution imaging technique and as a sensitive force apparatus for probing the mechanical properties of ocular tissues. The structural and mechanical properties of ocular tissues are of major importance to the understanding of the optomechanical functions of the human eye. In addition, AFM has played an important role in the development and characterization of ocular biomaterials, such as contact lenses and intraocular lenses. Studying ocular tissues using Atomic Force Microscopy has enabled several advances in ophthalmic research.

  6. Characterizations of cationic γ-carbolines binding with double-stranded DNA by spectroscopic methods and AFM imaging.

    PubMed

    Jia, Tao; Wang, Jing; Guo, Peng; Yu, Junping

    2015-01-28

    Two cationic γ-carbolines, 2-methyl-5H-pyrido[4,3-b]indolium iodide (MPII) and 2,5-dimethyl-5H-pyrido[4,3-b]indolium iodide (DPII), were synthesized, and the DNA-binding properties of the cationic γ-carbolines were elucidated. Through a series of experiments, we proved that the two cationic γ-carbolines could strongly interact with DNA by intercalative binding. However, DPII, with a methyl group substituting H atom of 5-NH, has shown a stronger intercalative interaction with DNA compared to MPII. The dissociation of H from the 5-NH of MPII resulted in better water solubility and less binding affinity to DNA. Atomic force microscopy (AFM) images of pBR322 showed that both MPII and DPII strongly interacted with DNA and induced conformational changes in DNA. Moreover, the CT-DNA circular dichroism (CD) spectra changes and the statistics of the node numbers of pBR322 in AFM images indicated that MPII had more profound effects on DNA conformations compared to DPII. Furthermore, our studies have shown that the interactions between cationic γ-carbolines and DNA were sensitive to ionic strength. Increased ionic strength in the buffer caused the DNA helix to shrink, and the base stacking would be more compact, which resulted in minimal intercalation of cationic γ-carbolines into DNA.

  7. Self assembly of epicuticular waxes on living plant surfaces imaged by atomic force microscopy (AFM).

    PubMed

    Koch, Kerstin; Neinhuis, Christoph; Ensikat, Hans-Jürgen; Barthlott, Wilhelm

    2004-03-01

    The cuticle of terrestrial vascular plants and some bryophytes is covered with a complex mixture of lipids, usually called epicuticular waxes. Self-assembly processes of wax molecules lead to crystalline three-dimensional micro- and nanostructures that emerge from an underlying wax film. This paper presents the first AFM study on wax regeneration on the surfaces of living plants and the very early stages of wax crystal formation at the molecular level. Wax formation was analysed on the leaves of Euphorbia lathyris, Galanthus nivalis, and Ipheion uniflorum. Immediately after wax removal, regeneration of a wax film began, consisting of individual layers of, typically, 3-5 nm thickness. Subsequently, several different stages of crystal growth could be distinguished, and different patterns of wax regeneration as well as considerable variation in regeneration speed were found.

  8. Supramolecular self-assembly of linear oligosilsesquioxanes on mica--AFM surface imaging and hydrophilicity studies.

    PubMed

    Kowalewska, Anna; Nowacka, Maria; Tracz, Adam; Makowski, Tomasz

    2015-06-28

    Linear oligomeric [2-(carboxymethylthio)ethylsilsesquioxanes] (LPSQ-COOH) adsorb spontaneously on muscovite mica and form smooth, well-ordered lamellar structures at the liquid-solid interface. Side carboxylic groups, having donor-acceptor character with regard to hydrogen bonds, are engaged both in multipoint molecule-to-substrate interactions and intermolecular cross-linking. The unique arrangement of silsesquioxane macromolecules, with COOH groups situated at the interface with air, produces highly hydrophilic surfaces of good thermal and solvolytic stability. Supramolecular assemblies of LPSQ-COOH were studied using atomic force microscopy (AFM), angle-resolved X-ray photoelectron spectroscopy (ARXPS) and attenuated total reflectance (ATR) FTIR spectroscopy. Comparative height profile analysis combined with ATR-FTIR studies of the spectral regions characteristic of carboxylic groups and C1s core level envelope by XPS confirmed specific interactions between LPSQ-COOH and mica.

  9. EDITORIAL: Imaging Systems and Techniques Imaging Systems and Techniques

    NASA Astrophysics Data System (ADS)

    Giakos, George; Yang, Wuqiang; Petrou, M.; Nikita, K. S.; Pastorino, M.; Amanatiadis, A.; Zentai, G.

    2011-10-01

    This special feature on Imaging Systems and Techniques comprises 27 technical papers, covering essential facets in imaging systems and techniques both in theory and applications, from research groups spanning three different continents. It mainly contains peer-reviewed articles from the IEEE International Conference on Imaging Systems and Techniques (IST 2011), held in Thessaloniki, Greece, as well a number of articles relevant to the scope of this issue. The multifaceted field of imaging requires drastic adaptation to the rapid changes in our society, economy, environment, and the technological revolution; there is an urgent need to address and propose dynamic and innovative solutions to problems that tend to be either complex and static or rapidly evolving with a lot of unknowns. For instance, exploration of the engineering and physical principles of new imaging systems and techniques for medical applications, remote sensing, monitoring of space resources and enhanced awareness, exploration and management of natural resources, and environmental monitoring, are some of the areas that need to be addressed with urgency. Similarly, the development of efficient medical imaging techniques capable of providing physiological information at the molecular level is another important area of research. Advanced metabolic and functional imaging techniques, operating on multiple physical principles, using high resolution and high selectivity nanoimaging techniques, can play an important role in the diagnosis and treatment of cancer, as well as provide efficient drug-delivery imaging solutions for disease treatment with increased sensitivity and specificity. On the other hand, technical advances in the development of efficient digital imaging systems and techniques and tomographic devices operating on electric impedance tomography, computed tomography, single-photon emission and positron emission tomography detection principles are anticipated to have a significant impact on a

  10. Reversed cell imprinting, AFM imaging and adhesion analyses of cells on patterned surfaces.

    PubMed

    Zhou, Xiongtu; Shi, Jian; Zhang, Fan; Hu, Jie; Li, Xin; Wang, Li; Ma, Xueming; Chen, Yong

    2010-05-01

    Cell adhesion and motility depend strongly on the interactions between cells and cell culture substratum. To observe the cell morphology at the interface between cells and artificial substratum or patterned surfaces, we have developed a technique named reversed cell imprinting. After culture and chemical fixation of the cells on a patterned hole array, a liquid polymer was poured on and UV cured, allowing taking off the cell-polymer assembly for a direct observation of the underside cell surface using atomic force microscopy. As expected, we observed local deformation of the cell membrane in the hole area with a penetration depth strongly dependent on the size and depth of the hole as well as the culture time. Quantitative analyses of Hela cells on patterned surfaces of polydimethylsiloxane (PDMS) revealed that the penetration was also position dependent over the cell attachment area due to the non-homogeneous distribution of the membrane stress. With the increase of the culture time, the penetration depth was reduced, in a close correlation with the increase of the cell spreading area. Nevertheless, both cell seeding and adhesion efficiency on high density hole arrays could be significantly increased comparing to that on a smooth surface. Patterned substrates are increasingly required to produce and interrogate new biomaterials for therapeutic benefit. Overall, this work suggests a strategy to endow conventional imaging methods with added functionality to enable easy observation of the underside cell morphology on topographic patterns. PMID:20390138

  11. Simultaneous multislice (SMS) imaging techniques

    PubMed Central

    Barth, Markus; Breuer, Felix; Koopmans, Peter J.; Poser, Benedikt A.

    2015-01-01

    Simultaneous multislice imaging (SMS) using parallel image reconstruction has rapidly advanced to become a major imaging technique. The primary benefit is an acceleration in data acquisition that is equal to the number of simultaneously excited slices. Unlike in‐plane parallel imaging this can have only a marginal intrinsic signal‐to‐noise ratio penalty, and the full acceleration is attainable at fixed echo time, as is required for many echo planar imaging applications. Furthermore, for some implementations SMS techniques can reduce radiofrequency (RF) power deposition. In this review the current state of the art of SMS imaging is presented. In the Introduction, a historical overview is given of the history of SMS excitation in MRI. The following section on RF pulses gives both the theoretical background and practical application. The section on encoding and reconstruction shows how the collapsed multislice images can be disentangled by means of the transmitter pulse phase, gradient pulses, and most importantly using multichannel receiver coils. The relationship between classic parallel imaging techniques and SMS reconstruction methods is explored. The subsequent section describes the practical implementation, including the acquisition of reference data, and slice cross‐talk. Published applications of SMS imaging are then reviewed, and the article concludes with an outlook and perspective of SMS imaging. Magn Reson Med 75:63–81, 2016. © 2015 The Authors. Magnetic Resonance in Medicine Published by Wiley Periodicals, Inc. on behalf of International Society of Medicine in Resonance. PMID:26308571

  12. Simultaneous multislice (SMS) imaging techniques.

    PubMed

    Barth, Markus; Breuer, Felix; Koopmans, Peter J; Norris, David G; Poser, Benedikt A

    2016-01-01

    Simultaneous multislice imaging (SMS) using parallel image reconstruction has rapidly advanced to become a major imaging technique. The primary benefit is an acceleration in data acquisition that is equal to the number of simultaneously excited slices. Unlike in-plane parallel imaging this can have only a marginal intrinsic signal-to-noise ratio penalty, and the full acceleration is attainable at fixed echo time, as is required for many echo planar imaging applications. Furthermore, for some implementations SMS techniques can reduce radiofrequency (RF) power deposition. In this review the current state of the art of SMS imaging is presented. In the Introduction, a historical overview is given of the history of SMS excitation in MRI. The following section on RF pulses gives both the theoretical background and practical application. The section on encoding and reconstruction shows how the collapsed multislice images can be disentangled by means of the transmitter pulse phase, gradient pulses, and most importantly using multichannel receiver coils. The relationship between classic parallel imaging techniques and SMS reconstruction methods is explored. The subsequent section describes the practical implementation, including the acquisition of reference data, and slice cross-talk. Published applications of SMS imaging are then reviewed, and the article concludes with an outlook and perspective of SMS imaging.

  13. Zeta potential, contact angles, and AFM imaging of protein conformation adsorbed on hybrid nanocomposite surfaces.

    PubMed

    Pinho, Ana C; Piedade, Ana P

    2013-08-28

    The sputtering deposition of gold (Au) and poly(tetrafluoroethylene) (PTFE) was used to prepare a nanocomposite hybrid thin film suitable for protein adsorption while maintaining the native conformation of the biological material. The monolithic PTFE and the nanocomposite PTFE/Au thin films, with Au content up to 1 at %, were co-deposited by r.f. magnetron sputtering using argon as a discharge gas and deposited onto 316L stainless steel substrates, the most commonly used steel in biomaterials. The deposited thin films, before and after bovine serum albumin (BSA) adsorption, were thoroughly characterized with special emphasis on the surface properties/characteristics by atomic force microscopy (AFM), zeta potential, and static and dynamic contact angle measurements, in order to assess the relationship between structure and conformational changes. The influence of a pre-adsorbed peptide (RGD) was also evaluated. The nanotopographic and chemical changes induced by the presence of gold in the nanocomposite thin films enable RGD bonding, which is critical for the maintenance of the BSA native conformation after adsorption.

  14. Gallotannin-Capped Gold Nanoparticles: Green Synthesis and Enhanced Morphology of AFM Images.

    PubMed

    Kim, Jaehyung; Yhim, Won Been; Park, Jong-Won; Lee, Sang-Hyeon; Kim, Tae Yoon; Cha, Song-Hyun; Kim, Hyun-Seok; Jang, Hong-Lae; Cho, Miyeon; Park, Youmie; Cho, Seonho

    2016-06-01

    Gold nanoparticles (AuNPs) were synthesized by a green method using a plant secondary metabolite, gallotannin. Gallotannin was used as a reducing and capping agent to convert gold ions into AuNPs for the generation of gallotannin-capped AuNPs (GT-AuNPs). This synthetic route is ecofriendly and eliminates the use of toxic chemical reducing agents. The characteristic surface plasmon resonance of the GT-AuNPs was observed at 536 nm in the UV-visible spectra. The face-centered cubic structure of GT-AuNPs was verified by X-ray diffraction analysis. The majority of the GT-AuNPs had a spherical shape with an average diameter of 15.93 ± 8.60 nm. Fourier transform infrared spectra suggested that the hydroxyl functional groups of gallotannin were involved in the synthesis of GT-AuNPs. The size and shape of nanoparticles can have a crucial impact on their biological, mechanical, and structural properties. Herein, we developed a modified anisotropic diffusion equation to selectively remove nanoscale experimental noise while preserving nanoscale intrinsic geometry information. To demonstrate the performance of the developed method, the ridge and valley lines were plotted by utilizing the principle curvatures. Compared to the original anisotropic diffusion and raw atomic force microscopy (AFM) experimental data, the developed modified anisotropic diffusion shows excellent performance in nanoscale noise removal while preserving the intrinsic aeometry of the nanoparticles. PMID:27427661

  15. Urologic imaging and interventional techniques

    SciTech Connect

    Bush, W.H.

    1989-01-01

    This book provides an overview of all imaging modalities and invasive techniques of the genitourinary system. Three general chapters discuss ionic and nonionic contrast media, the management of reactions to contrast media, and radiation doses from various uroradiologic procedures. Chapters are devoted to intravenous pyelography, computed tomography, magnetic resonance imaging, ultrasound, nuclear medicine, lymphography, arteriography, and venography. Two chapters discuss the pediatric applications of uroradiology and ultrasound. Two chapters integrate the various imaging techniques of the upper and lower genitourinary systems into an algorithmic approach for various pathologic entities.

  16. Superresolution techniques and ISAR imaging

    NASA Astrophysics Data System (ADS)

    Gabriel, W. F.

    High-resolution optimal estimation techniques are applied to the problem of radar imaging of rotating objects, sometimes referred to as ISAR (inverse synthetic array radar) imaging. Typical digital range-Doppler processing operations are described, utilizing two spectral estimation techniques. Quality ISAR images have been obtained from such processing, and particular examples, which are based on simulated data generated from point-target models of rotating objects, are shown. The first example is a so-called merry-go-round of 24 point-targets, and the MLM (maximum-likelihood method) algorithm is utilized to process a three-dimensional range-Doppler image estimate. The second example is a rotating boom along which are located 15 point-targets including a doublet, a triplet, and a quadruplet cluster that require superresolution techniques to resolve in the Doppler domain. It is concluded that superresolution techniques offer a viable alternative to conventional DFT (discrete Fourier transform) ISAR image processing and should permit either higher resolution images from the same data samples or equal-quality images from significantly fewer data samples.

  17. EDITORIAL: Imaging systems and techniques Imaging systems and techniques

    NASA Astrophysics Data System (ADS)

    Yang, Wuqiang; Giakos, George; Nikita, Konstantina; Pastorino, Matteo; Karras, Dimitrios

    2009-10-01

    The papers in this special issue focus on providing the state-of-the-art approaches and solutions to some of the most challenging imaging areas, such as the design, development, evaluation and applications of imaging systems, measuring techniques, image processing algorithms and instrumentation, with an ultimate aim of enhancing the measurement accuracy and image quality. This special issue explores the principles, engineering developments and applications of new imaging systems and techniques, and encourages broad discussion of imaging methodologies, shaping the future and identifying emerging trends. The multi-faceted field of imaging requires drastic adaptation to the rapid changes in our society, economy, environment and technological evolution. There is an urgent need to address new problems, which tend to be either static but complex, or dynamic, e.g. rapidly evolving with time, with many unknowns, and to propose innovative solutions. For instance, the battles against cancer and terror, monitoring of space resources and enhanced awareness, management of natural resources and environmental monitoring are some of the areas that need to be addressed. The complexity of the involved imaging scenarios and demanding design parameters, e.g. speed, signal-to-noise ratio (SNR), specificity, contrast, spatial resolution, scatter rejection, complex background and harsh environments, necessitate the development of a multi-functional, scalable and efficient imaging suite of sensors, solutions driven by innovation, and operation on diverse detection and imaging principles. Efficient medical imaging techniques capable of providing physiological information at the molecular level present another important research area. Advanced metabolic and functional imaging techniques, operating on multiple physical principles, and using high-resolution, high-selectivity nano-imaging methods, quantum dots, nanoparticles, biomarkers, nanostructures, nanosensors, micro-array imaging chips

  18. Identifying tips for intramolecular NC-AFM imaging via in situ fingerprinting

    NASA Astrophysics Data System (ADS)

    Sang, Hongqian; Jarvis, Samuel P.; Zhou, Zhichao; Sharp, Peter; Moriarty, Philip; Wang, Jianbo; Wang, Yu; Kantorovich, Lev

    2014-10-01

    A practical experimental strategy is proposed that could potentially enable greater control of the tip apex in non-contact atomic force microscopy experiments. It is based on a preparation of a structure of interest alongside a reference surface reconstruction on the same sample. Our proposed strategy is as follows. Spectroscopy measurements are first performed on the reference surface to identify the tip apex structure using a previously collected database of responses of different tips to this surface. Next, immediately following the tip identification protocol, the surface of interest is studied (imaging, manipulation and/or spectroscopy). The prototype system we choose is the mixed Si(111)-7×7 and surface which can be prepared on the same sample with a controlled ratio of reactive and passivated regions. Using an ``in silico'' approach based on ab initio density functional calculations and a set of tips with varying chemical reactivities, we show how one can perform tip fingerprinting using the Si(111)-7×7 reference surface. Then it is found by examining the imaging of a naphthalene tetracarboxylic diimide (NTCDI) molecule adsorbed on surface that negatively charged tips produce the best intramolecular contrast attributed to the enhancement of repulsive interactions.

  19. Examination of dentin surface using AFM (our experience).

    PubMed

    Zapletalová, Zdenka; Kubínek, Roman; Vůjtek, Milan; Novotný, Radko

    2004-01-01

    Atomic force microscopy (AFM) as one the technique of Scanning Probe Microscopy is useful for imaging of surface structure. This method can yield three-dimensional high-resolution topographic images of sample surfaces by using a scanning technique for conductors and insulators on atomic scale. It is based upon mapping of atomic-forces on a surface of an investigated sample. The method is useful not only in physics and chemistry; it can be also applied in biological fields. Special construction of AFM scanner enables to follow biological samples in liquid environments. Artifacts caused by dehydration of samples are removed this way. Dentin of human teeth is a vital hydrated tissue. It is strongly sensitive to dehydration and drying that are commonly used in preparation of samples in examinations by Scanning Electron Microscopy (SEM). We describe our experience in examination of dentin surfaces of extracted human third molars using contact method of AFM under moist conditions.

  20. Liquid contact resonance AFM: analytical models, experiments, and limitations

    NASA Astrophysics Data System (ADS)

    Parlak, Zehra; Tu, Qing; Zauscher, Stefan

    2014-11-01

    Contact resonance AFM (CR-AFM) is a scanning probe microscopy technique that utilizes the contact resonances of the AFM cantilever for concurrent imaging of topography and surface stiffness. The technique has not been used in liquid until recently due to analytical and experimental difficulties, associated with viscous damping of cantilever vibrations and fluid loading effects. To address these difficulties, (i) an analytical approach for contact resonances in liquid is developed, and (ii) direct excitation of the contact resonances is demonstrated by actuating the cantilever directly in a magnetic field. By implementing the analytical approach and the direct actuation through magnetic particles, quantitative stiffness imaging on surfaces with a wide range of stiffness can be achieved in liquid with soft cantilevers and low contact forces.

  1. Contact nanomechanical measurements with the AFM

    NASA Astrophysics Data System (ADS)

    Geisse, Nicholas

    2013-03-01

    The atomic force microscope (AFM) has found broad use in the biological sciences largely due to its ability to make measurements on unfixed and unstained samples under liquid. In addition to imaging at multiple spatial scales ranging from micro- to nanometer, AFMs are commonly used as nanomechanical probes. This is pertinent for cell biology, as it has been demonstrated that the geometrical and mechanical properties of the extracellular microenvironment are important in such processes as cancer, cardiovascular disease, muscular dystrophy, and even the control of cell life and death. Indeed, the ability to control and quantify these external geometrical and mechanical parameters arises as a key issue in the field. Because AFM can quantitatively measure the mechanical properties of various biological samples, novel insights to cell function and to cell-substrate interactions are now possible. As the application of AFM to these types of problems is widened, it is important to understand the performance envelope of the technique and its associated data analyses. This talk will discuss the important issues that must be considered when mechanical models are applied to real-world data. Examples of the effect of different model assumptions on our understanding of the measured material properties will be shown. Furthermore, specific examples of the importance of mechanical stimuli and the micromechanical environment to the structure and function of biological materials will be presented.

  2. Tooling Techniques Enhance Medical Imaging

    NASA Technical Reports Server (NTRS)

    2012-01-01

    mission. The manufacturing techniques developed to create the components have yielded innovations advancing medical imaging, transportation security, and even energy efficiency.

  3. Bone fragility and imaging techniques

    PubMed Central

    D’Elia, Giovanni; Caracchini, Giuseppe; Cavalli, Loredana; Innocenti, Paolo

    2009-01-01

    Bone fragility is a silent condition that increases bone fracture risk, enhanced by low bone mass and microarchitecture deterioration of bone tissue that lead to osteoporosis. Fragility fractures are the major clinical manifestation of osteoporosis. A large body of epidemiological data indicates that the current standard for predicting fragility fracture risk is an areal BMD (aBMD) measurement by DXA. Although mineral density measurements assess the quantity of bone, the quality of the tissue is an important predictor of fragility. Thus, bone strength is explained not only by BMD but also by macrostructural and microstructural characteristics of bone tissue. Imaging diagnostics, through the use of X-rays, DXA, Ultrasonography, CT and MR, provides methods for diagnosis and characterization of fractures, and semi- and quantitative methods for assessment of bone consistency and strength, that become precious for bone fragility clinical management if they are integrated by clinical risk factors. The last employment of sophisticated non-invasively imaging techniques in clinical research as high-resolution CT (hrCT), microCT (μ-CT), high-resolution MR (hrMR) and, microRM (μRM), combined with finite element analysis methods, open to new challenges in a better bone strength assessment to enhance the comprehension of biomechanical parameters and the prediction of fragility fractures. PMID:22461252

  4. Access Techniques for Document Image Databases.

    ERIC Educational Resources Information Center

    Walker, Frank L.; Thoma, George R.

    1990-01-01

    Describes access and retrieval techniques implemented as part of a research and development program in electronic imaging applied to document storage and retrieval at the National Library of Medicine. Design considerations for large image databases are discussed. (six references) (EAM)

  5. Introduction to Atomic Force Microscopy (AFM) in Biology.

    PubMed

    Kreplak, Laurent

    2016-01-01

    The atomic force microscope (AFM) has the unique capability of imaging biological samples with molecular resolution in buffer solution over a wide range of time scales from milliseconds to hours. In addition to providing topographical images of surfaces with nanometer- to angstrom-scale resolution, forces between single molecules and mechanical properties of biological samples can be investigated from the nano-scale to the micro-scale. Importantly, the measurements are made in buffer solutions, allowing biological samples to "stay alive" within a physiological-like environment while temporal changes in structure are measured-e.g., before and after addition of chemical reagents. These qualities distinguish AFM from conventional imaging techniques of comparable resolution, e.g., electron microscopy (EM). This unit provides an introduction to AFM on biological systems and describes specific examples of AFM on proteins, cells, and tissues. The physical principles of the technique and methodological aspects of its practical use and applications are also described. © 2016 by John Wiley & Sons, Inc. PMID:27479503

  6. AFM-imaging diagnosis method for single nucleotide polymorphism using molecular beacon DNA as an intramolecular ligation template of target DNA and a viewable indicator.

    PubMed

    Yoshinaga, Hisao; Nakano, Koji; Soh, Nobuaki; Imato, Toshihiko

    2012-01-01

    An AFM-imaging-based method for single nucleotide polymorphism (SNP) analysis is described. A stem-loop-forming 34-mer oligonucleotide (p34s) was designed. p34s contains the complementary sequence for K-ras (5'-GGT GGC-3', t6G), one of the human oncogenes, at the 5'-end for target-recognition and five successive phosphorothioate linkages in the loop. The functional probe, either alone or hybridized with target DNA (p34s/t6G), relaxed upon treatment with "opener" DNA. The template/target DNA interstrand hybridization product is covalently connected by ligase if the correct target is used, but not hybridized species including mismatches. With these results, developed was a solid-phase SNP assay by transferring an aliquot of the product onto an Au(111) substrate for self-assembly, followed by AFM imaging. Clear contrasts that allow the detection of SNPs, were observed for the ligated and non-ligated species representing the loop-to-linear conformational change. Simple statistical surface-roughness analysis determined the lowest concentration of the sample to be 5 × 10(-10) M, whose necessary sample quantity was 5 fmol.

  7. Ultra high speed image processing techniques. [electronic packaging techniques

    NASA Technical Reports Server (NTRS)

    Anthony, T.; Hoeschele, D. F.; Connery, R.; Ehland, J.; Billings, J.

    1981-01-01

    Packaging techniques for ultra high speed image processing were developed. These techniques involve the development of a signal feedthrough technique through LSI/VLSI sapphire substrates. This allows the stacking of LSI/VLSI circuit substrates in a 3 dimensional package with greatly reduced length of interconnecting lines between the LSI/VLSI circuits. The reduced parasitic capacitances results in higher LSI/VLSI computational speeds at significantly reduced power consumption levels.

  8. Electronic imaging system and technique

    DOEpatents

    Bolstad, Jon O.

    1987-01-01

    A method and system for viewing objects obscurred by intense plasmas or flames (such as a welding arc) includes a pulsed light source to illuminate the object, the peak brightness of the light reflected from the object being greater than the brightness of the intense plasma or flame; an electronic image sensor for detecting a pulsed image of the illuminated object, the sensor being operated as a high-speed shutter; and electronic means for synchronizing the shutter operation with the pulsed light source.

  9. Electronic imaging system and technique

    DOEpatents

    Bolstad, J.O.

    1984-06-12

    A method and system for viewing objects obscurred by intense plasmas or flames (such as a welding arc) includes a pulsed light source to illuminate the object, the peak brightness of the light reflected from the object being greater than the brightness of the intense plasma or flame; an electronic image sensor for detecting a pulsed image of the illuminated object, the sensor being operated as a high-speed shutter; and electronic means for synchronizing the shutter operation with the pulsed light source.

  10. Single molecule detection of PARP1 and PARP2 interaction with DNA strand breaks and their poly(ADP-ribosyl)ation using high-resolution AFM imaging

    PubMed Central

    Sukhanova, Maria V.; Abrakhi, Sanae; Joshi, Vandana; Pastre, David; Kutuzov, Mikhail M.; Anarbaev, Rashid O.; Curmi, Patrick A.; Hamon, Loic; Lavrik, Olga I.

    2016-01-01

    PARP1 and PARP2 are implicated in the synthesis of poly(ADP-ribose) (PAR) after detection of DNA damage. The specificity of PARP1 and PARP2 interaction with long DNA fragments containing single- and/or double-strand breaks (SSBs and DSBs) have been studied using atomic force microscopy (AFM) imaging in combination with biochemical approaches. Our data show that PARP1 localizes mainly on DNA breaks and exhibits a slight preference for nicks over DSBs, although the protein has a moderately high affinity for undamaged DNA. In contrast to PARP1, PARP2 is mainly detected at a single DNA nick site, exhibiting a low level of binding to undamaged DNA and DSBs. The enhancement of binding affinity of PARP2 for DNA containing a single nick was also observed using fluorescence titration. AFM studies reveal that activation of both PARPs leads to the synthesis of highly branched PAR whose size depends strongly on the presence of SSBs and DSBs for PARP1 and of SSBs for PARP2. The initial affinity between the PARP1, PARP2 and the DNA damaged site appears to influence both the size of the PAR synthesized and the time of residence of PARylated PARP1 and PARP2 on DNA damages. PMID:26673720

  11. Single molecule detection of PARP1 and PARP2 interaction with DNA strand breaks and their poly(ADP-ribosyl)ation using high-resolution AFM imaging.

    PubMed

    Sukhanova, Maria V; Abrakhi, Sanae; Joshi, Vandana; Pastre, David; Kutuzov, Mikhail M; Anarbaev, Rashid O; Curmi, Patrick A; Hamon, Loic; Lavrik, Olga I

    2016-04-01

    PARP1 and PARP2 are implicated in the synthesis of poly(ADP-ribose) (PAR) after detection of DNA damage. The specificity of PARP1 and PARP2 interaction with long DNA fragments containing single- and/or double-strand breaks (SSBs and DSBs) have been studied using atomic force microscopy (AFM) imaging in combination with biochemical approaches. Our data show that PARP1 localizes mainly on DNA breaks and exhibits a slight preference for nicks over DSBs, although the protein has a moderately high affinity for undamaged DNA. In contrast to PARP1, PARP2 is mainly detected at a single DNA nick site, exhibiting a low level of binding to undamaged DNA and DSBs. The enhancement of binding affinity of PARP2 for DNA containing a single nick was also observed using fluorescence titration. AFM studies reveal that activation of both PARPs leads to the synthesis of highly branched PAR whose size depends strongly on the presence of SSBs and DSBs for PARP1 and of SSBs for PARP2. The initial affinity between the PARP1, PARP2 and the DNA damaged site appears to influence both the size of the PAR synthesized and the time of residence of PARylated PARP1 and PARP2 on DNA damages.

  12. Applying DIP techniques to microscopic biological images

    NASA Astrophysics Data System (ADS)

    de Albuquerque Araujo, Arnaldo; de Faria, Bernardo M.; Silva, Marco R.; dos Reis, Helton J.

    2001-05-01

    This work reports and illustrates the application of enhancement techniques to animal nervous system images from a Laser Scanning Confocal Microscope. Images obtained from this equipment are used to help researchers on localizing several organelles and proteins. Different image components of the same tissue sample can be acquired varying the confocal microscope laser beam wavelength. Due to non-ideal acquisition, numerous images contain artifacts, poor distribution of gray levels and unsystematic contrast gradient. Several techniques have been implemented in order to enhance the images, including noise and artifacts reduction, contrast expansion and enhancements on organelles borders, such as emboss and 3D-visualization. A methodology to accurately solve the frequent contrast gradient problem has been implemented. The approach is based on blurring filter, histogram equalization and arithmetic operations. Image coloring is another issue. Each of the acquired components must be merged into one single image with its respective color. The final phase of the work consisted of gathering all implemented techniques to elaborate an application that enclosed facilities to automatically open files from confocal file format (.pic format), apply the developed methodologies to enhance the images, build the multi-component artificial color image and save the results in common formats. This application must deal with large amounts of images easily, providing facilities to batch processing and image indexing and labeling.

  13. High-speed AFM for Studying Dynamic Biomolecular Processes

    NASA Astrophysics Data System (ADS)

    Ando, Toshio

    2008-03-01

    Biological molecules show their vital activities only in aqueous solutions. It had been one of dreams in biological sciences to directly observe biological macromolecules (protein, DNA) at work under a physiological condition because such observation is straightforward to understanding their dynamic behaviors and functional mechanisms. Optical microscopy has no sufficient spatial resolution and electron microscopy is not applicable to in-liquid samples. Atomic force microscopy (AFM) can visualize molecules in liquids at high resolution but its imaging rate was too low to capture dynamic biological processes. This slow imaging rate is because AFM employs mechanical probes (cantilevers) and mechanical scanners to detect the sample height at each pixel. It is quite difficult to quickly move a mechanical device of macroscopic size with sub-nanometer accuracy without producing unwanted vibrations. It is also difficult to maintain the delicate contact between a probe tip and fragile samples. Two key techniques are required to realize high-speed AFM for biological research; fast feedback control to maintain a weak tip-sample interaction force and a technique to suppress mechanical vibrations of the scanner. Various efforts have been carried out in the past decade to materialize high-speed AFM. The current high-speed AFM can capture images on video at 30-60 frames/s for a scan range of 250nm and 100 scan lines, without significantly disturbing week biomolecular interaction. Our recent studies demonstrated that this new microscope can reveal biomolecular processes such as myosin V walking along actin tracks and association/dissociation dynamics of chaperonin GroEL-GroES that occurs in a negatively cooperative manner. The capacity of nanometer-scale visualization of dynamic processes in liquids will innovate on biological research. In addition, it will open a new way to study dynamic chemical/physical processes of various phenomena that occur at the liquid-solid interfaces.

  14. Data Compression Techniques For CT Image Archival

    NASA Astrophysics Data System (ADS)

    Quinn, John F.; Rhodes, Michael L.; Rosner, Bruce

    1983-05-01

    Large digital files are inherent to CT image data. CT installations that routinely archive patient data are penalized computer time, technologist time, tape purchase, and file space. This paper introduces compression techniques that reduce the amount of tape needed to store image data and the amount of computer time to do so. The benefits delivered by this technique have also been applied to online disk systems. Typical reductions of 40% to 50% of original file space is reported.

  15. A comparison of image inpainting techniques

    NASA Astrophysics Data System (ADS)

    Liu, Yaojie; Shu, Chang

    2015-03-01

    Image inpainting is an important research topic in the field of image processing. The objective of inpainting is to "guess" the lost information according to surrounding image information, which can be applied in old photo restoration, object removal and demosaicing. Based on the foundation of previous literature of image inpainting and image modeling, this paper provides an overview of the state-of-art image inpainting methods. This survey first covers mathematics models of inpainting and different kinds of image impairment. Then it goes to the main components of an image, the structure and the texture, and states how these inpainting models and algorithms deal with the two separately, using PDE's method, exemplar-based method and etc. Afterwards sparse-representation-based inpainting and related techniques are introduced. Experimental analysis will be presented to evaluate the relative merits of different algorithms, with the measure of Peak Signal to Noise Ratio (PSNR) as well as direct visual perception.

  16. Enhanced integral imaging system using image floating technique

    NASA Astrophysics Data System (ADS)

    Min, Sung-Wook; Kim, Joohwan; Lee, Byoungho

    2005-09-01

    Enhanced integral imaging system based on the image floating method is proposed. The integral imaging is one of the most promising methods among the autostereoscopic displays and the integrated image has the volumetric characteristics unlike the other stereoscopic images. The image floating is a common 3D display technique, which uses a big convex lens or a concave mirror to exhibit the image of a real object to the observer. The image floating method can be used to emphasize the viewing characteristics of the volumetric image and the noise image which is located on the fixed plane can be eliminated by the floating lens through the control of the focal length. In this paper, the solution of the seam noise and the image flipping of the integral imaging system is proposed using the image floating method. Moreover, the advanced techniques of the integral imaging system can be directly applied to the proposed system. The proposed system can be successfully applied to many 3D applications such as 3D television.

  17. Image processing techniques for digital orthophotoquad production

    USGS Publications Warehouse

    Hood, Joy J.; Ladner, L. J.; Champion, Richard A.

    1989-01-01

    Orthophotographs have long been recognized for their value as supplements or alternatives to standard maps. Recent trends towards digital cartography have resulted in efforts by the US Geological Survey to develop a digital orthophotoquad production system. Digital image files were created by scanning color infrared photographs on a microdensitometer. Rectification techniques were applied to remove tile and relief displacement, thereby creating digital orthophotos. Image mosaicking software was then used to join the rectified images, producing digital orthophotos in quadrangle format.

  18. Superresolution optical fluctuation imaging (SOFI) aided nanomanipulation of quantum dots using AFM for novel artificial arrangements of chemically functionalized colloidal quantum dots and plasmonic structures

    NASA Astrophysics Data System (ADS)

    Dopf, Katja; Heunisch, Sebastian; Schwab, Patrick; Moosmann, Carola; Habermehl, Anne; Lemmer, Uli; Eisler, Hans-Jürgen

    2014-05-01

    For single photon experiments or research on novel hybrid structures consisting of several colloidal quantum dots (Qdots) and plasmonic nanoparticles both the precise localization and the optical behavior of the emitters need to be correlated. Therefore, the gap between the high spatial resolution topography information that provides detailed localization of single Qdots and the diffraction limited fluorescence image needs to be overcome. In this paper, we demonstrate the combination of atomic force microscopy (AFM) with wide-field fluorescence microscopy improved by superresolution optical fluctuation imaging (SOFI). With this approach the topography and the superresolution image can be overlaid with sub-diffraction precision. Consequently, we discriminate between single Qdots that are optically active and dark ones. Additionally, the optical time-dependent behavior of molecular emitters can be selectively investigated. This method is, furthermore, useful for an advanced manipulation and characterization toolbox of Qdots in general. In summary, our findings represent an easily adaptable, highly reproducible and comparatively cheap subdiffraction limit imaging method and they facilitate the efficient selection of bright Qdots in a standard lab environment for proof-of-principle nanostructures containing Qdots and for nanomanipulation experiments.

  19. ezAFM: A low cost Atomic Force Microscope(AFM)

    NASA Astrophysics Data System (ADS)

    Celik, Umit; Celik, Kubra; Aslan, Husnu; Kehribar, Ihsan; Dede, Munir; Ozgur Ozer, H.; Oral, Ahmet

    2012-02-01

    A low cost AFM, ezAFM is developed for educational purposes as well as research. Optical beam deflection method is used to measure the deflection of cantilever. ezAFM scanner is built using voice coil motors (VCM) with ˜50x50x6 μm scan area. The microscope uses alignment free cantilevers, which minimizes setup times. FPGA based AFM feedback Control electronics is developed. FPGA technology allows us to drive all peripherals in parallel. ezAFM Controller is connected to PC by USB 2.0 interface as well as Wi-Fi. We have achieved <5nm lateral and ˜0.01nm vertical resolution. ezAFM can image single atomic steps in HOPG and mica. An optical microscope with <3 μm resolution is also integrated into the system. ezAFM supports different AFM operation modes such as dynamic mode, contact mode, lateral force microscopy. Advanced modes like magnetic force microscopy and electric force microscopy will be implemented later on. The new ezAFM system provides, short learning times for student labs, quick setup and easy to transport for portable applications with the best price/performance ratio. The cost of the system starts from 15,000, with system performance comparable with the traditional AFM systems.

  20. Multisensor image fusion techniques in remote sensing

    NASA Astrophysics Data System (ADS)

    Ehlers, Manfred

    Current and future remote sensing programs such as Landsat, SPOT, MOS, ERS, JERS, and the space platform's Earth Observing System (Eos) are based on a variety of imaging sensors that will provide timely and repetitive multisensor earth observation data on a global scale. Visible, infrared and microwave images of high spatial and spectral resolution will eventually be available for all parts of the earth. It is essential that efficient processing techniques be developed to cope with the large multisensor data volumes. This paper discusses data fusion techniques that have proved successful for synergistic merging of SPOT HRV, Landsat TM and SIR-B images. It is demonstrated that these techniques can be used to improve rectification accuracies, to depicit greater cartographic detail, and to enhance spatial resolution in multisensor image data sets.

  1. Imaging of Au nanoparticles deeply buried in polymer matrix by various atomic force microscopy techniques.

    PubMed

    Kimura, Kuniko; Kobayashi, Kei; Matsushige, Kazumi; Yamada, Hirofumi

    2013-10-01

    Recently, some papers reported successful imaging of subsurface features using atomic force microscopy (AFM). Some theoretical studies have also been presented, however the imaging mechanisms are not fully understood yet. In the preceeding papers, imaging of deeply buried nanometer-scale features has been successful only if they were buried in a soft matrix. In this paper, subsurface features (Au nanoparticles) buried in a soft polymer matrix were visualized. To elucidate the imaging mechanisms, various AFM techniques; heterodyne force microscopy, ultrasonic atomic force microscopy (UAFM), 2nd-harmonic UAFM and force modulation microscopy (FMM) were employed. The particles buried under 960 nm from the surface were successfully visualized which has never been achieved. The results elucidated that it is important for subsurface imaging to choose a cantilever with a suitable stiffness range for a matrix. In case of using the most suitable cantilever, the nanoparticles were visualized using every technique shown above except for FMM. The experimental results suggest that the subsurface features buried in a soft matrix with a depth of at least 1 µm can affect the local viscoelasticity (mainly viscosity) detected as the variation of the amplitude and phase of the tip oscillation on the surface. This phenomenon presumably makes it possible to visualize such deeply buried nanometer-scale features in a soft matrix. PMID:23770541

  2. Ultrasonic imaging techniques for breast cancer detection.

    SciTech Connect

    Goulding, N. R.; Marquez, J. D.; Prewett, E. M.; Claytor, T. N.; Nadler, B. R.; Huang, L.

    2006-01-01

    Improving the resolution and specificity of current ultrasonic imaging technology can enhance its relevance to detection of early-stage breast cancers. Ultrasonic evaluation of breast lesions is desirable because it is quick, inexpensive, and does not expose the patient to potentially harmful ionizing radiation. Improved image quality and resolution enables earlier detection and more accurate diagnoses of tumors, thus reducing the number of biopsies performed, increasing treatment options, and lowering mortality, morbidity, and remission percentages. In this work, a novel ultrasonic imaging reconstruction method that exploits straight-ray migration is described. This technique, commonly used in seismic imaging, accounts for scattering more accurately than standard ultrasonic approaches, thus providing superior image resolution. A breast phantom with various inclusions is imaged using a pulse-echo approach. The data are processed using the ultrasonic migration method and results are compared to standard linear ultrasound and to x-ray computed tomography (CT) scans. For an ultrasonic frequency of 2.25 MHz, imaged inclusions and features of approximately 1mm are resolved, although better resolution is expected with minor modifications. Refinement of this application using other imaging techniques such as time-reversal mirrors (TRM), synthetic aperture focusing technique (SAFT), decomposition of the time reversal operator (DORT), and factorization methods is also briefly discussed.

  3. Robust document image binarization technique for degraded document images.

    PubMed

    Su, Bolan; Lu, Shijian; Tan, Chew Lim

    2013-04-01

    Segmentation of text from badly degraded document images is a very challenging task due to the high inter/intra-variation between the document background and the foreground text of different document images. In this paper, we propose a novel document image binarization technique that addresses these issues by using adaptive image contrast. The adaptive image contrast is a combination of the local image contrast and the local image gradient that is tolerant to text and background variation caused by different types of document degradations. In the proposed technique, an adaptive contrast map is first constructed for an input degraded document image. The contrast map is then binarized and combined with Canny's edge map to identify the text stroke edge pixels. The document text is further segmented by a local threshold that is estimated based on the intensities of detected text stroke edge pixels within a local window. The proposed method is simple, robust, and involves minimum parameter tuning. It has been tested on three public datasets that are used in the recent document image binarization contest (DIBCO) 2009 & 2011 and handwritten-DIBCO 2010 and achieves accuracies of 93.5%, 87.8%, and 92.03%, respectively, that are significantly higher than or close to that of the best-performing methods reported in the three contests. Experiments on the Bickley diary dataset that consists of several challenging bad quality document images also show the superior performance of our proposed method, compared with other techniques. PMID:23221822

  4. Scanning hall probe microscopy (SHPM) using quartz crystal AFM feedback.

    PubMed

    Dede, M; Urkmen, K; Girişen, O; Atabak, M; Oral, A; Farrer, I; Ritchie, D

    2008-02-01

    Scanning Hall Probe Microscopy (SHPM) is a quantitative and non-invasive technique for imaging localized surface magnetic field fluctuations such as ferromagnetic domains with high spatial and magnetic field resolution of approximately 50 nm and 7 mG/Hz(1/2) at room temperature. In the SHPM technique, scanning tunneling microscope (STM) or atomic force microscope (AFM) feedback is used to keep the Hall sensor in close proximity of the sample surface. However, STM tracking SHPM requires conductive samples; therefore the insulating substrates have to be coated with a thin layer of gold. This constraint can be eliminated with the AFM feedback using sophisticated Hall probes that are integrated with AFM cantilevers. However it is very difficult to micro fabricate these sensors. In this work, we have eliminated the difficulty in the cantilever-Hall probe integration process, just by gluing a Hall Probe chip to a quartz crystal tuning fork force sensor. The Hall sensor chip is simply glued at the end of a 32.768 kHz or 100 kHz Quartz crystal, which is used as force sensor. An LT-SHPM system is used to scan the samples. The sensor assembly is dithered at the resonance frequency using a digital Phase Locked Loop circuit and frequency shifts are used for AFM tracking. SHPM electronics is modified to detect AFM topography and the frequency shift, along with the magnetic field image. Magnetic domains and topography of an Iron Garnet thin film crystal, NdFeB demagnetised magnet and hard disk samples are presented at room temperature. The performance is found to be comparable with the SHPM using STM feedback.

  5. Review: Magnetic resonance imaging techniques in ophthalmology

    PubMed Central

    Fagan, Andrew J.

    2012-01-01

    Imaging the eye with magnetic resonance imaging (MRI) has proved difficult due to the eye’s propensity to move involuntarily over typical imaging timescales, obscuring the fine structure in the eye due to the resulting motion artifacts. However, advances in MRI technology help to mitigate such drawbacks, enabling the acquisition of high spatiotemporal resolution images with a variety of contrast mechanisms. This review aims to classify the MRI techniques used to date in clinical and preclinical ophthalmologic studies, describing the qualitative and quantitative information that may be extracted and how this may inform on ocular pathophysiology. PMID:23112569

  6. Techniques for Molecular Imaging Probe Design

    PubMed Central

    Reynolds, Fred; Kelly, Kimberly A.

    2011-01-01

    Molecular imaging allows clinicians to visualize disease specific molecules, thereby providing relevant information in the diagnosis and treatment of patients. With advances in genomics and proteomics and underlying mechanisms of disease pathology, the number of targets identified has significantly outpaced the number of developed molecular imaging probes. There has been a concerted effort to bridge this gap with multidisciplinary efforts in chemistry, proteomics, physics, material science, and biology; all essential to progress in molecular imaging probe development. In this review, we will discuss target selection, screening techniques and probe optimization with the aim of developing clinically relevant molecularly targeted imaging agents. PMID:22201532

  7. Surface pressure and elasticity of hydrophobin HFBII layers on the air-water interface: rheology versus structure detected by AFM imaging.

    PubMed

    Stanimirova, Rumyana D; Gurkov, Theodor D; Kralchevsky, Peter A; Balashev, Konstantin T; Stoyanov, Simeon D; Pelan, Eddie G

    2013-05-21

    Here, we combine experiments with Langmuir trough and atomic force microscopy (AFM) to investigate the reasons for the special properties of layers from the protein HFBII hydrophobin spread on the air-water interface. The hydrophobin interfacial layers possess the highest surface dilatational and shear elastic moduli among all investigated proteins. The AFM images show that the spread HFBII layers are rather inhomogeneous, (i.e., they contain voids, monolayer and multilayer domains). A continuous compression of the layer leads to filling the voids and transformation of a part of the monolayer into a trilayer. The trilayer appears in the form of large surface domains, which can be formed by folding and subduction of parts from the initial monolayer. The trilayer appears also in the form of numerous submicrometer spots, which can be obtained by forcing protein molecules out of the monolayer and their self-assembly into adjacent pimples. Such structures are formed because not only the hydrophobic parts, but also the hydrophilic parts of the HFBII molecules can adhere to each other in the water medium. If a hydrophobin layer is subjected to oscillations, its elasticity considerably increases, up to 500 mN/m, which can be explained with compaction. The relaxation of the layer's tension after expansion or compression follows the same relatively simple law, which refers to two-dimensional diffusion of protein aggregates within the layer. The characteristic diffusion time after compression is longer than after expansion, which can be explained with the impedence of diffusion in the more compact interfacial layer. The results shed light on the relation between the mesoscopic structure of hydrophobin interfacial layers and their unique mechanical properties that find applications for the production of foams and emulsions of extraordinary stability; for the immobilization of functional molecules at surfaces, and as coating agents for surface modification.

  8. Lossless image compression technique for infrared thermal images

    NASA Astrophysics Data System (ADS)

    Allred, Lloyd G.; Kelly, Gary E.

    1992-07-01

    The authors have achieved a 6.5-to-one image compression technique for thermal images (640 X 480, 1024 colors deep). Using a combination of new and more traditional techniques, the combined algorithm is computationally simple, enabling `on-the-fly' compression and storage of an image in less time than it takes to transcribe the original image to or from a magnetic medium. Similar compression has been achieved on visual images by virtue of the feature that all optical devices possess a modulation transfer function. As a consequence of this property, the difference in color between adjacent pixels is a usually small number, often between -1 and +1 graduations for a meaningful color scheme. By differentiating adjacent rows and columns, the original image can be expressed in terms of these small numbers. A simple compression algorithm for these small numbers achieves a four to one image compression. By piggy-backing this technique with a LZW compression or a fixed Huffman coding, an additional 35% image compression is obtained, resulting in a 6.5-to-one lossless image compression. Because traditional noise-removal operators tend to minimize the color graduations between adjacent pixels, an additional 20% reduction can be obtained by preprocessing the image with a noise-removal operator. Although noise removal operators are not lossless, their application may prove crucial in applications requiring high compression, such as the storage or transmission of a large number or images. The authors are working with the Air Force Photonics Technology Application Program Management office to apply this technique to transmission of optical images from satellites.

  9. Comparison of various enhanced radar imaging techniques

    NASA Astrophysics Data System (ADS)

    Gupta, Inder J.; Gandhe, Avinash

    1998-09-01

    Recently, many techniques have been proposed to enhance the quality of radar images obtained using SAR and/or ISAR. These techniques include spatially variant apodization (SVA), adaptive sidelobe reduction (ASR), the Capon method, amplitude and phase estimation of sinusoids (APES) and data extrapolation. SVA is a special case of ASR; whereas the APES algorithm is similar to the Capon method except that it provides a better amplitude estimate. In this paper, the ASR technique, the APES algorithm and data extrapolation are used to generate radar images of two experimental targets and an airborne target. It is shown that although for ideal situations (point targets) the APES algorithm provides the best radar images (reduced sidelobe level and sharp main lobe), its performance degrades quickly for real world targets. The ASR algorithm gives radar images with low sidelobes but at the cost of some loss of information about the target. Also, there is not much improvement in radar image resolution. Data extrapolation, on the other hand, improves image resolution. In this case one can reduce the sidelobes by using non-uniform weights. Any loss in the radar image resolution due to non-uniform weights can be compensated by further extrapolating the scattered field data.

  10. High throughput nanofabrication of silicon nanowire and carbon nanotube tips on AFM probes by stencil-deposited catalysts.

    PubMed

    Engstrom, Daniel S; Savu, Veronica; Zhu, Xueni; Bu, Ian Y Y; Milne, William I; Brugger, Juergen; Boggild, Peter

    2011-04-13

    A new and versatile technique for the wafer scale nanofabrication of silicon nanowire (SiNW) and multiwalled carbon nanotube (MWNT) tips on atomic force microscope (AFM) probes is presented. Catalyst material for the SiNW and MWNT growth was deposited on prefabricated AFM probes using aligned wafer scale nanostencil lithography. Individual vertical SiNWs were grown epitaxially by a catalytic vapor-liquid-solid (VLS) process and MWNTs were grown by a plasma-enhanced chemical vapor (PECVD) process on the AFM probes. The AFM probes were tested for imaging micrometers-deep trenches, where they demonstrated a significantly better performance than commercial high aspect ratio tips. Our method demonstrates a reliable and cost-efficient route toward wafer scale manufacturing of SiNW and MWNT AFM probes. PMID:21446752

  11. Identifying individual chemical bonds in single-molecule chemical reaction products using nc-AFM

    NASA Astrophysics Data System (ADS)

    Wickenburg, Sebastian; de Oteyza, Dimas G.; Chen, Yen-Chia; Riss, Alexander; Tsai, Hsin-Zon; Pedramrazi, Zahra; Bradley, Aaron J.; Ugeda, Miguel M.; Gorman, Patrick; Etkin, Grisha; Mowbray, Duncan J.; Perez, Alejandro; Rubio, Angel; Crommie, Michael F.; Fischer, Felix R.

    2014-03-01

    Determining reaction pathways and products is an integral part of chemical synthesis. Ensemble measurements are commonly used, but identifying products of complex reactions at surfaces presents a significant challenge. Here we present a non-contact AFM (nc-AFM) study to directly address this issue. We followed the change of the chemical structures, from reactants to products of enediyne cyclization reactions on metal surfaces. Thermal annealing of enediynes induced a series of cyclization cascades leading to radical species and the formation of dimers. Atomically resolved nc-AFM images reveal the precise chemical structure and the formation of chemical bonds between single molecular units. With the support of DFT calculations, we identified the underlying chemical pathways and barriers, demonstrating the potential of this atomically resolved AFM technique to study unknown reaction products in surface chemistry at the single-molecule level.

  12. A summary of image segmentation techniques

    NASA Technical Reports Server (NTRS)

    Spirkovska, Lilly

    1993-01-01

    Machine vision systems are often considered to be composed of two subsystems: low-level vision and high-level vision. Low level vision consists primarily of image processing operations performed on the input image to produce another image with more favorable characteristics. These operations may yield images with reduced noise or cause certain features of the image to be emphasized (such as edges). High-level vision includes object recognition and, at the highest level, scene interpretation. The bridge between these two subsystems is the segmentation system. Through segmentation, the enhanced input image is mapped into a description involving regions with common features which can be used by the higher level vision tasks. There is no theory on image segmentation. Instead, image segmentation techniques are basically ad hoc and differ mostly in the way they emphasize one or more of the desired properties of an ideal segmenter and in the way they balance and compromise one desired property against another. These techniques can be categorized in a number of different groups including local vs. global, parallel vs. sequential, contextual vs. noncontextual, interactive vs. automatic. In this paper, we categorize the schemes into three main groups: pixel-based, edge-based, and region-based. Pixel-based segmentation schemes classify pixels based solely on their gray levels. Edge-based schemes first detect local discontinuities (edges) and then use that information to separate the image into regions. Finally, region-based schemes start with a seed pixel (or group of pixels) and then grow or split the seed until the original image is composed of only homogeneous regions. Because there are a number of survey papers available, we will not discuss all segmentation schemes. Rather than a survey, we take the approach of a detailed overview. We focus only on the more common approaches in order to give the reader a flavor for the variety of techniques available yet present enough

  13. Qplus AFM driven nanostencil.

    PubMed

    Grévin, B; Fakir, M; Hayton, J; Brun, M; Demadrille, R; Faure-Vincent, J

    2011-06-01

    We describe the development of a novel setup, in which large stencils with suspended silicon nitride membranes are combined with atomic force microscopy (AFM) regulation by using tuning forks. This system offers the possibility to perform separate AFM and nanostencil operations, as well as combined modes when using stencil chips with integrated tips. The flexibility and performances are demonstrated through a series of examples, including wide AFM scans in closed loop mode, probe positioning repeatability of a few tens of nanometer, simultaneous evaporation of large (several hundred of micron square) and nanoscopic metals and fullerene patterns in static, multistep, and dynamic modes. This approach paves the way for further developments, as it fully combines the advantages of conventional stenciling with the ones of an AFM driven shadow mask. PMID:21721701

  14. Functional magnetic resonance imaging: imaging techniques and contrast mechanisms.

    PubMed Central

    Howseman, A M; Bowtell, R W

    1999-01-01

    Functional magnetic resonance imaging (fMRI) is a widely used technique for generating images or maps of human brain activity. The applications of the technique are widespread in cognitive neuroscience and it is hoped they will eventually extend into clinical practice. The activation signal measured with fMRI is predicated on indirectly measuring changes in the concentration of deoxyhaemoglobin which arise from an increase in blood oxygenation in the vicinity of neuronal firing. The exact mechanisms of this blood oxygenation level dependent (BOLD) contrast are highly complex. The signal measured is dependent on both the underlying physiological events and the imaging physics. BOLD contrast, although sensitive, is not a quantifiable measure of neuronal activity. A number of different imaging techniques and parameters can be used for fMRI, the choice of which depends on the particular requirements of each functional imaging experiment. The high-speed MRI technique, echo-planar imaging provides the basis for most fMRI experiments. The problems inherent to this method and the ways in which these may be overcome are particularly important in the move towards performing functional studies on higher field MRI systems. Future developments in techniques and hardware are also likely to enhance the measurement of brain activity using MRI. PMID:10466145

  15. Cytogenetic analysis of quinoa chromosomes using nanoscale imaging and spectroscopy techniques

    PubMed Central

    2013-01-01

    Here we present a high-resolution chromosomal spectral map derived from synchrotron-based soft X-ray spectromicroscopy applied to quinoa species. The label-free characterization of quinoa metaphase chromosomes shows that it consists of organized substructures of DNA-protein complex. The analysis of spectra of chromosomes using the scanning transmission X-ray microscope (STXM) and its superposition of the pattern with the atomic force microscopy (AFM) and scanning electron microscopy (SEM) images proves that it is possible to precisely locate the gene loci and the DNA packaging inside the chromosomes. STXM has been successfully used to distinguish and quantify the DNA and protein components inside the quinoa chromosomes by visualizing the interphase at up to 30-nm spatial resolution. Our study represents the successful attempt of non-intrusive interrogation and integrating imaging techniques of chromosomes using synchrotron STXM and AFM techniques. The methodology developed for 3-D imaging of chromosomes with chemical specificity and temporal resolution will allow the nanoscale imaging tools to emerge from scientific research and development into broad practical applications such as gene loci tools and biomarker libraries. PMID:24191931

  16. Cytogenetic analysis of quinoa chromosomes using nanoscale imaging and spectroscopy techniques.

    PubMed

    Yangquanwei, Zhong; Neethirajan, Suresh; Karunakaran, Chithra

    2013-01-01

    Here we present a high-resolution chromosomal spectral map derived from synchrotron-based soft X-ray spectromicroscopy applied to quinoa species. The label-free characterization of quinoa metaphase chromosomes shows that it consists of organized substructures of DNA-protein complex. The analysis of spectra of chromosomes using the scanning transmission X-ray microscope (STXM) and its superposition of the pattern with the atomic force microscopy (AFM) and scanning electron microscopy (SEM) images proves that it is possible to precisely locate the gene loci and the DNA packaging inside the chromosomes. STXM has been successfully used to distinguish and quantify the DNA and protein components inside the quinoa chromosomes by visualizing the interphase at up to 30-nm spatial resolution. Our study represents the successful attempt of non-intrusive interrogation and integrating imaging techniques of chromosomes using synchrotron STXM and AFM techniques. The methodology developed for 3-D imaging of chromosomes with chemical specificity and temporal resolution will allow the nanoscale imaging tools to emerge from scientific research and development into broad practical applications such as gene loci tools and biomarker libraries.

  17. Cytogenetic analysis of quinoa chromosomes using nanoscale imaging and spectroscopy techniques

    NASA Astrophysics Data System (ADS)

    Yangquanwei, Zhong; Neethirajan, Suresh; Karunakaran, Chithra

    2013-11-01

    Here we present a high-resolution chromosomal spectral map derived from synchrotron-based soft X-ray spectromicroscopy applied to quinoa species. The label-free characterization of quinoa metaphase chromosomes shows that it consists of organized substructures of DNA-protein complex. The analysis of spectra of chromosomes using the scanning transmission X-ray microscope (STXM) and its superposition of the pattern with the atomic force microscopy (AFM) and scanning electron microscopy (SEM) images proves that it is possible to precisely locate the gene loci and the DNA packaging inside the chromosomes. STXM has been successfully used to distinguish and quantify the DNA and protein components inside the quinoa chromosomes by visualizing the interphase at up to 30-nm spatial resolution. Our study represents the successful attempt of non-intrusive interrogation and integrating imaging techniques of chromosomes using synchrotron STXM and AFM techniques. The methodology developed for 3-D imaging of chromosomes with chemical specificity and temporal resolution will allow the nanoscale imaging tools to emerge from scientific research and development into broad practical applications such as gene loci tools and biomarker libraries.

  18. Retinal Image Simulation of Subjective Refraction Techniques.

    PubMed

    Perches, Sara; Collados, M Victoria; Ares, Jorge

    2016-01-01

    Refraction techniques make it possible to determine the most appropriate sphero-cylindrical lens prescription to achieve the best possible visual quality. Among these techniques, subjective refraction (i.e., patient's response-guided refraction) is the most commonly used approach. In this context, this paper's main goal is to present a simulation software that implements in a virtual manner various subjective-refraction techniques--including Jackson's Cross-Cylinder test (JCC)--relying all on the observation of computer-generated retinal images. This software has also been used to evaluate visual quality when the JCC test is performed in multifocal-contact-lens wearers. The results reveal this software's usefulness to simulate the retinal image quality that a particular visual compensation provides. Moreover, it can help to gain a deeper insight and to improve existing refraction techniques and it can be used for simulated training.

  19. Red flag imaging techniques in Barrett's esophagus.

    PubMed

    Saxena, Payal; Canto, Marcia Irene

    2013-07-01

    The key to detection and treatment of early neoplasia in Barrett's esophagus (BE) is thorough and careful inspection of the Barrett's segment. The greatest role for red flag techniques is to help identify neoplastic lesions for targeted biopsy and therapy. High-definition white light endoscopy (HD-WLE) can potentially improve endoscopic imaging of BE compared with standard endoscopy, but little scientific evidence supports this. The addition of autofluorescence imaging to HD-WLE and narrow band imaging increases sensitivity and the false-positive rate without significantly improving overall detection of BE-related neoplasia.

  20. Angular Differential Imaging: a Powerful High-Contrast Imaging Technique

    SciTech Connect

    Marois, C; Lafreniere, D; Doyon, R; Macintosh, B; Nadeau, D

    2005-11-07

    Angular differential imaging is a high-contrast imaging technique that reduces speckle noise from quasi-static optical aberrations and facilitates the detection of faint nearby companions. A sequence of images is acquired with an altitude/azimuth telescope, the instrument rotator being turned off. This keeps the instrument and telescope optics aligned, stabilizes the instrumental PSF and allows the field of view to rotate with respect to the instrument. For each image, a reference PSF obtained from other images of the sequence is subtracted. All residual images are then rotated to align the field and are median combined. Observed performances are reported for Gemini Altair/NIRI data. Inside the speckle dominated region of the PSF, it is shown that quasi-static PSF noise can be reduced by a factor {approx}5 for each image subtraction. The combination of all residuals then provides an additional gain of the order of the square root of the total number of images acquired. To our knowledge, this is the first time an acquisition strategy and reduction pipeline designed for speckle attenuation and high contrast imaging is demonstrated to significantly get better detection limits with longer integration times at all angular separations. A PSF noise attenuation of 100 was achieved from 2-hour long sequences of images of Vega, reaching a 5-sigma contrast of 20 magnitudes for separations greater than 7''. This technique can be used with currently available instruments to search for {approx} 1 M{sub Jup} exoplanets with orbits of radii between 50 and 300 AU around nearby young stars. The possibility of combining the technique with other high-contrast imaging methods is briefly discussed.

  1. Imaging Instrumentation and Techniques for Precision Radiotherapy

    NASA Astrophysics Data System (ADS)

    Parodi, Katia; Parodi, Katia; Thieke, Christian; Thieke, Christian

    Over the last decade, several technological advances have considerably improved the achievable precision of dose delivery in radiation therapy. Clinical exploitation of the superior tumor-dose conformality offered by modern radiotherapy techniques like intensity-modulated radiotherapy and ion beam therapy requires morphological and functional assessment of the tumor during the entire therapy chain from treatment planning to beam application and treatment response evaluation. This chapter will address the main rationale and role of imaging in state-of-the-art external beam radiotherapy. Moreover, it will present the status of novel imaging instrumentation and techniques being nowadays introduced in clinical use or still under development for image guidance and, ultimately, dose guidance of precision radiotherapy.

  2. Microscopic imaging techniques for drug discovery.

    PubMed

    Bullen, Andrew

    2008-01-01

    Microscopic imaging can enhance the drug discovery process by helping to describe how disease processes unfold and how potential therapies might intervene. Recently introduced technologies, and enhancements to existing techniques, are addressing technical issues that have limited the usefulness of microscopic imaging in the past. In particular, these innovations are improving spatial resolution, increasing tissue penetration, overcoming physical access issues and enhancing experimental throughput. Notable recent trends, which are discussed in this article, include the development of super-resolution microscopes, the incorporation of multiphoton techniques into intravital and fibre-optic microscopy and the automation of microscopy and image analysis for high-content screening. Together, these developments are augmenting the existing assays and disease models that are used in early drug discovery and, in some cases, enabling new ones.

  3. Advanced automated char image analysis techniques

    SciTech Connect

    Tao Wu; Edward Lester; Michael Cloke

    2006-05-15

    Char morphology is an important characteristic when attempting to understand coal behavior and coal burnout. In this study, an augmented algorithm has been proposed to identify char types using image analysis. On the basis of a series of image processing steps, a char image is singled out from the whole image, which then allows the important major features of the char particle to be measured, including size, porosity, and wall thickness. The techniques for automated char image analysis have been tested against char images taken from ICCP Char Atlas as well as actual char particles derived from pyrolyzed char samples. Thirty different chars were prepared in a drop tube furnace operating at 1300{sup o}C, 1% oxygen, and 100 ms from 15 different world coals sieved into two size fractions (53-75 and 106-125 {mu}m). The results from this automated technique are comparable with those from manual analysis, and the additional detail from the automated sytem has potential use in applications such as combustion modeling systems. Obtaining highly detailed char information with automated methods has traditionally been hampered by the difficulty of automatic recognition of individual char particles. 20 refs., 10 figs., 3 tabs.

  4. Retinal Image Simulation of Subjective Refraction Techniques

    PubMed Central

    Perches, Sara; Collados, M. Victoria; Ares, Jorge

    2016-01-01

    Refraction techniques make it possible to determine the most appropriate sphero-cylindrical lens prescription to achieve the best possible visual quality. Among these techniques, subjective refraction (i.e., patient’s response-guided refraction) is the most commonly used approach. In this context, this paper’s main goal is to present a simulation software that implements in a virtual manner various subjective-refraction techniques—including Jackson’s Cross-Cylinder test (JCC)—relying all on the observation of computer-generated retinal images. This software has also been used to evaluate visual quality when the JCC test is performed in multifocal-contact-lens wearers. The results reveal this software’s usefulness to simulate the retinal image quality that a particular visual compensation provides. Moreover, it can help to gain a deeper insight and to improve existing refraction techniques and it can be used for simulated training. PMID:26938648

  5. Imaging Techniques in Acute Heart Failure.

    PubMed

    Pérez del Villar, Candelas; Yotti, Raquel; Bermejo, Javier

    2015-07-01

    In recent years, imaging techniques have revolutionized the diagnosis of heart failure. In patients with a clinical picture of acute decompensation, prognosis is largely determined by early implementation of general measures and treatment of the underlying cause. Given its diagnostic yield and portability, ultrasound has become an essential tool in the setting of acute heart failure, and is currently found in all medical departments involved in the care of the critically ill patient. Cardiac magnetic resonance and computed tomography allow detailed characterization of multiple aspects of cardiac structure and function that were previously unavailable. This helps guide and monitor many of the treatment decisions in the acute heart failure population in an entirely noninvasive way. This article aims to review the usefulness of the imaging techniques that are clinically relevant in the context of an episode of acute heart failure. We discuss the indications and limitations of these techniques in detail and describe the general principles for the appropriate interpretation of results.

  6. Adrenal imaging (Part 1): Imaging techniques and primary cortical lesions

    PubMed Central

    Panda, Ananya; Das, Chandan J.; Dhamija, Ekta; Kumar, Rakesh; Gupta, A. K.

    2015-01-01

    Adrenal glands can be affected by a variety of lesions. Adrenal lesions can either be primary, of adrenal origin, or secondary to other pathologies. Primary adrenal lesions can further be either of cortical or medullary origin. Functioning adrenal lesions can also give clues to the histologic diagnosis and direct workup. Over the years, various imaging techniques have been developed that have increased diagnostic accuracy and helped in better characterization of adrenal lesions non-invasively. In the first part of the two part series, we review adrenal imaging techniques and adrenal cortical tumors such as adenomas, adrenocortical tumors, adrenal hyperplasia and oncocytomas. PMID:25593820

  7. Electrochemically modified carbon and chromium surfaces for AFM imaging of double-strand DNA interaction with transposase protein.

    PubMed

    Esnault, Charles; Chénais, Benoît; Casse, Nathalie; Delorme, Nicolas; Louarn, Guy; Pilard, Jean-François

    2013-02-01

    Carbon and chromium surfaces were modified by electrochemical reduction of a diazonium salt formed in situ from the sulfanilic acid. The organic layer formed was activated by phosphorus pentachloride (PCl(5)) to form a benzene sulfonil chloride (Ar-SO(2)Cl). An electrochemical study of the blocking effect and the activity of this surface was carried out on a carbon electrode. The chromium surface study was completed by X-ray photoelectron spectroscopy and atomic force microscopy to characterize the formation of a compact monolayer (0.8 nm height and roughness 0.2-0.3 nm). The compactness and the activity of this organic monolayer allowed us to affix a length dsDNA with the aim of analyzing the formation of a complex between dsDNA and a protein. The interaction of a transposase protein with its target dsDNA was investigated. The direct imaging of the nucleoproteic complex considered herein gives new insights in the comprehension of transposase-DNA interaction in agreement with biochemical data.

  8. Imaging techniques in cardiac resynchronization therapy

    PubMed Central

    Sá, Maria Isabel; de Roos, Albert; Westenberg, Jos J. M.

    2007-01-01

    Cardiac resynchronization therapy is a high cost therapeutic option with proven efficacy on improving symptoms of ventricular failure and for reducing both hospitalization and mortality. However, a significant number of patients do not respond to cardiac resynchronization therapy that is due to various reasons. Identification of the optimal pacing site is crucial to obtain the best therapeutic result that necessitates careful patient selection. Currently, using echocardiography for mechanical dyssynchrony assessment performs patient selection. Multi-Detector-Row Computed Tomography (MDCT) and Magnetic Resonance Imaging (MRI) are new imaging techniques that may assist the cardiologist in patient selection. These new imaging techniques have the potential to improve the success rate of cardiac resynchronization therapy, due to pre-interventional evaluation of the venous coronary anatomy, to evaluation of the presence of scar tissue, and to improved evaluation of mechanical dyssynchrony. In conclusion, clinical issues associated with heart failure in potential candidates for cardiac resynchronization therapy, and the information regarding this therapy that can be provided by the imaging techniques echocardiography, MDCT, and MRI, are reviewed. PMID:17503216

  9. Confocal Raman-AFM, A New Tool for Materials Research

    NASA Astrophysics Data System (ADS)

    Schmidt, Ute

    2005-03-01

    Characterization of heterogeneous systems, e.g. polymers, on the nanometer scale continues to grow in importance and to impact key applications in the field of materials science, nanotechnology and catalysis. The development of advanced polymeric materials for such applications requires detailed information about the physical and chemical properties of these materials on the nanometer scale. However, some details about the phase-separation process in polymers are difficult to study with conventional characterization techniques due to the inability of these methods to chemically differentiate materials with good spatial resolution, without damage, staining or preferential solvent washing. The CR-AFM is a breakthrough in microscopy. It combines three measuring techniques in one instrument: a high resolution confocal optical microscope, an extremely sensitive Raman spectroscopy system, and an Atomic Force Microscope. Using this instrument, the high spatial and topographical resolution obtained with an AFM can be directly linked to the chemical information gained by Confocal Raman spectroscopy. To demonstrate the capabilities of this unique combination of measuring techniques, polymer blend films, spin coated on glass substrates, have been characterized. AFM measurements reveal the structural and mechanical properties of the films, whereas Raman spectral images show the chemical composition of the blends.

  10. A software tool for STED-AFM correlative super-resolution microscopy

    NASA Astrophysics Data System (ADS)

    Koho, Sami; Deguchi, Takahiro; Löhmus, Madis; Näreoja, Tuomas; Hänninen, Pekka E.

    2015-03-01

    Multi-modal correlative microscopy allows combining the strengths of several imaging techniques to provide unique contrast. However it is not always straightforward to setup instruments for such customized experiments, as most microscope manufacturers use their own proprietary software, with limited or no capability to interface with other instruments - this makes correlation of the multi-modal data extremely challenging. We introduce a new software tool for simultaneous use of a STimulated Emission Depletion (STED) microscope with an Atomic Force Microscope (AFM). In our experiments, a Leica TCS STED commercial super-resolution microscope, together with an Agilent 5500ilm AFM microscope was used. With our software, it is possible to synchronize the data acquisition between the STED and AFM instruments, as well as to perform automatic registration of the AFM images with the super-resolution STED images. The software was realized in LabVIEW; the registration part was also implemented as an ImageJ script. The synchronization was realized by controlling simple trigger signals, also available in the commercial STED microscope, with a low-cost National Instruments USB-6501 digital I/O card. The registration was based on detecting the positions of the AFM tip inside the STED fieldof-view, which were then used as registration landmarks. The registration should work on any STED and tip-scanning AFM microscope combination, at nanometer-scale precision. Our STED-AFM correlation method has been tested with a variety of nanoparticle and fixed cell samples. The software will be released under BSD open-source license.

  11. [Imaging of male infertility: techniques and results].

    PubMed

    Eiss, D; Cornud, F; Thiounn, N; Wolf, J-P; Amar, E; Ghouadni, M; Hélénon, O

    2012-09-01

    Assessment of male infertility includes clinical examination, laboratory tests (semen analysis, hormones dosage) and sonographic examination of the urogenital tract. Male infertility is due to testicular abnormalities (secretory type) or obstructive disorder (excretory type). Imaging should provide accurate definition of anatomical causes of infertility in order to deliver appropriate treatment. Testicular Doppler ultrasound with transrectal ultrasound is the gold standard imaging technique to explore male infertility. MRI, because of its high resolution, provides a multiplanar study especially in congenital and inflammatory abnormalities of the urogenital tract. This pictorial review illustrates the most frequent causes of male infertility.

  12. Advanced optical imaging techniques for neurodevelopment.

    PubMed

    Wu, Yicong; Christensen, Ryan; Colón-Ramos, Daniel; Shroff, Hari

    2013-12-01

    Over the past decade, developmental neuroscience has been transformed by the widespread application of confocal and two-photon fluorescence microscopy. Even greater progress is imminent, as recent innovations in microscopy now enable imaging with increased depth, speed, and spatial resolution; reduced phototoxicity; and in some cases without external fluorescent probes. We discuss these new techniques and emphasize their dramatic impact on neurobiology, including the ability to image neurons at depths exceeding 1mm, to observe neurodevelopment noninvasively throughout embryogenesis, and to visualize neuronal processes or structures that were previously too small or too difficult to target with conventional microscopy.

  13. Advanced Optical Imaging Techniques for Neurodevelopment

    PubMed Central

    Wu, Yicong; Christensen, Ryan; Colón-Ramos, Daniel; Shroff, Hari

    2013-01-01

    Over the past decade, developmental neuroscience has been transformed by the widespread application of confocal and two-photon fluorescence microscopy. Even greater progress is imminent, as recent innovations in microscopy now enable imaging with increased depth, speed, and spatial resolution; reduced phototoxicity; and in some cases without external fluorescent probes. We discuss these new techniques and emphasize their dramatic impact on neurobiology, including the ability to image neurons at depths exceeding 1 mm, to observe neurodevelopment noninvasively throughout embryogenesis, and to visualize neuronal processes or structures that were previously too small or too difficult to target with conventional microscopy. PMID:23831260

  14. Applications Of Binary Image Analysis Techniques

    NASA Astrophysics Data System (ADS)

    Tropf, H.; Enderle, E.; Kammerer, H. P.

    1983-10-01

    After discussing the conditions where binary image analysis techniques can be used, three new applications of the fast binary image analysis system S.A.M. (Sensorsystem for Automation and Measurement) are reported: (1) The human view direction is measured at TV frame rate while the subject's head is free movable. (2) Industrial parts hanging on a moving conveyor are classified prior to spray painting by robot. (3) In automotive wheel assembly, the eccentricity of the wheel is minimized by turning the tyre relative to the rim in order to balance the eccentricity of the components.

  15. Localization of the ergtoxin-1 receptors on the voltage sensing domain of hERG K+ channel by AFM recognition imaging.

    PubMed

    Chtcheglova, Lilia A; Atalar, Fatmahan; Ozbek, Ugur; Wildling, Linda; Ebner, Andreas; Hinterdorfer, Peter

    2008-04-01

    The inhibition of the human ether-à-go-go-related (hERG) K+ channels is the major cause of long QT syndromes inducing fatal cardiac arrhythmias. Ergtoxin 1 (ErgTx1) belongs to scorpion-toxins, which are K+ channel-blockers, and binds to hERG channel with 1:1 stoichiometry and high affinity (Kd approximately 10 nM). Nevertheless, patch-clamp recordings recently demonstrated that ErgTx1 does not establish complete blockade of hERG currents, even at high ErgTx1 concentrations. Such phenomenon is supposed to be consistent with highly dynamic conformational changes of the outer pore domain of hERG. In this study, simultaneous topography and recognition imaging (TREC) on hERG HEK 293 cells was used to visualize binding sites on the extracellular part of hERG channel (on S1-S2 region) for Anti-Kv11.1 (hERG-extracellular-antibody). The recognition maps of hERG channels contained recognition spots, haphazardly distributed and organized in clusters. Recognition images after the addition of ErgTx1 at high concentrations ( approximately 1 microM) revealed subsequent partial disappearance of clusters, indicating that ErgTx1 was bound to the S1-S2 region. These results were supported by AFM force spectroscopy data, showing for the first time that voltage sensing domain (S1-S4) of hERG K+ channel might be one of the multiple binding sites of ErgTx1. PMID:18286302

  16. Pork grade evaluation using hyperspectral imaging techniques

    NASA Astrophysics Data System (ADS)

    Zhou, Rui; Cai, Bo; Wang, Shoubing; Ji, Huihua; Chen, Huacai

    2011-11-01

    The method to evaluate the grade of the pork based on hyperspectral imaging techniques was studied. Principal component analysis (PCA) was performed on the hyperspectral image data to extract the principal components which were used as the inputs of the evaluation model. By comparing the different discriminating rates in the calibration set and the validation set under different information, the choice of the components can be optimized. Experimental results showed that the classification evaluation model was the optimal when the principal of component (PC) of spectra was 3, while the corresponding discriminating rate was 89.1% in the calibration set and 84.9% in the validation set. It was also good when the PC of images was 9, while the corresponding discriminating rate was 97.2% in the calibration set and 91.1% in the validation set. The evaluation model based on both information of spectra and images was built, in which the corresponding PCs of spectra and images were used as the inputs. This model performed very well in grade classification evaluation, and the discriminating rates of calibration set and validation set were 99.5% and 92.7%, respectively, which were better than the two evaluation models based on single information of spectra or images.

  17. Cardiac Imaging Techniques for Physicians: Late Enhancement

    PubMed Central

    Kellman, Peter; Arai, Andrew E.

    2012-01-01

    Late enhancement imaging is used to diagnose and characterize a wide range of ischemic and non-ischemic cardiomyopathies, and its use has become ubiquitous in the cardiac MR exam. As the use of late enhancement imaging has matured and the span of applications has widened, the demands on image quality have grown. The characterization of sub-endocardial MI now includes the accurate quantification of scar size, shape, and characterization of borders which have been shown to have prognostic significance. More diverse patterns of late enhancement including patchy, mid-wall, sub-epicardial, or diffuse enhancement are of interest in diagnosing non-ischemic cardiomyopathies. As clinicians are examining late enhancement images for more subtle indication of fibrosis, the demand for lower artifacts has increased. A range of new techniques have emerged to improve the speed and quality of late enhancement imaging including: methods for acquisition during free breathing, and fat water separated imaging for characterizing fibro-fatty infiltration and reduction of artifacts related to the presence of fat. Methods for quantification of T1 and extracellular volume fraction are emerging to tackle the issue of discriminating globally diffuse fibrosis from normal healthy tissue which is challenging using conventional late enhancement methods. The aim of this review will be to describe the current state of the art and to provide a guide to various clinical protocols that are commonly used. PMID:22903654

  18. Novel Polymer Linkers for Single Molecule AFM Force Spectroscopy

    PubMed Central

    Tong, Zenghan; Mikheikin, Andrey; Krasnoslobodtsev, Alexey; Lv, Zhengjian; Lyubchenko, Yuri L.

    2013-01-01

    Flexible polymer linkers play an important role in various imaging and probing techniques that require surface immobilization, including atomic force microscopy (AFM). In AFM force spectroscopy, polymer linkers are necessary for the covalent attachment of molecules of interest to the AFM tip and the surface. The polymer linkers tether the molecules and provide their proper orientation in probing experiments. Additionally, the linkers separate specific interactions from nonspecific short-range adhesion and serve as a reference point for the quantitative analysis of single molecule probing events. In this report, we present our results on the synthesis and testing of a novel polymer linker and the identification of a number of potential applications for its use in AFM force spectroscopy experiments. The synthesis of the linker is based on the well-developed phosphoramidate (PA) chemistry that allows the routine synthesis of linkers with predetermined lengths and PA composition. These linkers are homogeneous in length and can be terminated with various functional groups. PA linkers with different functional groups were synthesized and tested in experimental systems utilizing different immobilization chemistries. We probed interactions between complementary DNA oligonucleotides; DNA and protein complexes formed by the site-specific binding protein SfiI; and interactions between amyloid peptide (Aβ42). The results of the AFM force spectroscopy experiments validated the feasibility of the proposed approach for the linker design and synthesis. Furthermore, the properties of the tether (length, functional groups) can be adjusted to meet the specific requirements for different force spectroscopy experiments and system characteristics, suggesting that it could be used for a large number of various applications. PMID:23624104

  19. Lunar surface chemistry: A new imaging technique

    USGS Publications Warehouse

    Andre, C.G.; Bielefeld, M.J.; Eliason, E.; Soderblom, L.A.; Adler, I.; Philpotts, J.A.

    1977-01-01

    Detailed chemical maps of the lunar surface have been constructed by applying a new weighted-filter imaging technique to Apollo 15 and Apollo 16 x-ray fluorescence data. The data quality improvement is amply demonstrated by (i) modes in the frequency distribution, representing highland and mare soil suites, which are not evident before data filtering and (ii) numerous examples of chemical variations which are correlated with small-scale (about 15 kilometer) lunar topographic features.

  20. [Direct and indirect mucosal wave imaging techniques].

    PubMed

    Krasnodębska, Paulina; Szkiełkowska, Agata

    2016-04-01

    The vocal folds play a key role in the process of phonation. Cyclical movements of the vocal folds model a space called glottis, what leads to voice formation. The space contains surface between the vocal folds and the inner surface of the arytenoid cartilages. The best indicator of the vocal folds vibratory function is the mucosal wave. The presence and size of the mucosal wave is widely recognized as an indicator of tension and plasticity of vocal folds. It is also essential in the process of creating a proper, resonant voice. In the article, current knowledge of mucosal wave imaging techniques is given. Imaging can be carried out directly and indirectly. Among the direct methods, the following are distinguished: laryngostroboscopy, laryngovideostroboscopy, videokymography and high-speed digital imaging. Indirect methods include: electroglottography, photoglottography and ultrasonography. PMID:27137829

  1. Biometric Identification Using Holographic Radar Imaging Techniques

    SciTech Connect

    McMakin, Douglas L.; Sheen, David M.; Hall, Thomas E.; Kennedy, Mike O.; Foote, Harlan P.

    2007-04-01

    Pacific Northwest National Laboratory researchers have been at the forefront of developing innovative screening systems to enhance security and a novel imaging system to provide custom-fit clothing using holographic radar imaging techniques. First-of-a-kind cylindrical holographic imaging systems have been developed to screen people at security checkpoints for the detection of concealed, body worn, non-metallic threats such as plastic and liquid explosives, knifes and contraband. Another embodiment of this technology is capable of obtaining full sized body measurements in near real time without the person under surveillance removing their outer garments. Radar signals readily penetrate clothing and reflect off the water in skin. This full body measurement system is commercially available for best fitting ready to wear clothing, which was the first “biometric” application for this technology. One compelling feature of this technology for security biometric applications is that it can see effectively through disguises, appliances and body hair.

  2. Imaging Body Fat: Techniques and Cardiometabolic Implications

    PubMed Central

    Wang, H.; Chen, Y. E; Eitzman, D.T.

    2014-01-01

    Obesity is a world-wide epidemic and is associated with multiple comorbidities. The mechanisms underlying the relationship between obesity and adverse health outcomes remain poorly understood. This may be due to several factors including the crude measures used to estimate adiposity, the striking heterogeneity between adipose tissue depots, and the influence of fat accumulation in multiple organs. In order to advance our understanding of fat stores and associated co-morbidities in humans, it will be necessary to image adiposity throughout the body and ultimately also assess its functionality. Large clinical studies are demonstrating the prognostic importance of adipose tissue imaging. Newer techniques capable of imaging fat metabolism and other functions of adipose tissue may provide additional prognostic utility and may be useful in guiding therapeutic interventions. PMID:25147343

  3. Biometric identification using holographic radar imaging techniques

    NASA Astrophysics Data System (ADS)

    McMakin, Douglas L.; Sheen, David M.; Hall, Thomas E.; Kennedy, Mike O.; Foote, Harlen P.

    2007-04-01

    Pacific Northwest National Laboratory researchers have been at the forefront of developing innovative screening systems to enhance security and a novel imaging system to provide custom-fit clothing using holographic radar imaging techniques. First-of-a-kind cylindrical holographic imaging systems have been developed to screen people at security checkpoints for the detection of concealed, body worn, non-metallic threats such as plastic and liquid explosives, knifes and contraband. Another embodiment of this technology is capable of obtaining full sized body measurements in near real time without the person under surveillance removing their outer garments. Radar signals readily penetrate clothing and reflect off the water in skin. This full body measurement system is commercially available for best fitting ready to wear clothing, which was the first "biometric" application for this technology. One compelling feature of this technology for security biometric applications is that it can see effectively through disguises, appliances and body hair.

  4. Authenticity techniques for PACS images and records

    NASA Astrophysics Data System (ADS)

    Wong, Stephen T. C.; Abundo, Marco; Huang, H. K.

    1995-05-01

    Along with the digital radiology environment supported by picture archiving and communication systems (PACS) comes a new problem: How to establish trust in multimedia medical data that exist only in the easily altered memory of a computer. Trust is characterized in terms of integrity and privacy of digital data. Two major self-enforcing techniques can be used to assure the authenticity of electronic images and text -- key-based cryptography and digital time stamping. Key-based cryptography associates the content of an image with the originator using one or two distinct keys and prevents alteration of the document by anyone other than the originator. A digital time stamping algorithm generates a characteristic `digital fingerprint' for the original document using a mathematical hash function, and checks that it has not been modified. This paper discusses these cryptographic algorithms and their appropriateness for a PACS environment. It also presents experimental results of cryptographic algorithms on several imaging modalities.

  5. Simultaneous parallel inclined readout image technique.

    PubMed

    Paley, Martyn N J; Lee, Kuan J; Wild, James M; Griffiths, Paul D; Whitby, Elspeth H

    2006-06-01

    Sensitivity-encoded phase undersampling has been combined with simultaneous slice excitation to produce a parallel MRI method with a high volumetric acquisition acceleration factor without the need for auxiliary stepped field coils. Dual-slice excitation was produced by modulating both spin and gradient echo sequences at +/-6 kHz. Frequency aliasing of simultaneously excited slices was prevented by using an additional gradient applied along the slice axis during data acquisition. Data were acquired using a four-channel receiver array and x4 sensitivity encoding on a 1.5 T MR system. The simultaneous parallel inclined readout image technique has been successfully demonstrated in both phantoms and volunteers. A multiplicative image acquisition acceleration factor of up to x8 was achieved. Image SNR and resolution was dependent on the ratio of the readout gradient to the additional slice gradient. A ratio of approximately 2:1 produced acceptable image quality. Use of RF pulses with additional excitation bands should enable the technique to be extended to volumetric acquisition acceleration factors in the range of x16-24 without the SNR limitations of pure partially parallel phase reduction methods.

  6. Diagnostic imaging techniques in thyroid cancer

    SciTech Connect

    Friedman, M.; Toriumi, D.M.; Mafee, M.F.

    1988-02-01

    With the refinement of fine-needle aspiration, the specific applications of thyroid imaging techniques need to be reevaluated for efficiency and cost containment. No thyroid imaging test should be routinely obtained. Radionuclide scanning is most beneficial in evaluating the functional status of thyroid nodules when fine-needle aspiration is inadequate, the findings are benign, or when there is no discrete nodule that is palpated in an enlarged gland. When fine-needle aspiration is unavailable or unreliable, radionuclide scanning becomes a first-line diagnostic tool. Ultrasonography should be used primarily for identifying a solid component of a cystic nodule, determining the size of nodules on thyroxine suppression that are not easily palpable, or for performing guided fine-needle aspiration. Computerized tomography and magnetic resonance imaging both have a definite role in the evaluation of thyroid tumors. Magnetic resonance imaging is superior to computerized tomography for the evaluation of metastatic, retrotracheal, or mediastinal involvement of large thyroid tumors or goiters. Careful selection of the diagnostic techniques will ensure more accurate diagnosis and reduce unnecessary patient costs in the treatment of thyroid cancer.

  7. Nano Mechanical Machining Using AFM Probe

    NASA Astrophysics Data System (ADS)

    Mostofa, Md. Golam

    Complex miniaturized components with high form accuracy will play key roles in the future development of many products, as they provide portability, disposability, lower material consumption in production, low power consumption during operation, lower sample requirements for testing, and higher heat transfer due to their very high surface-to-volume ratio. Given the high market demand for such micro and nano featured components, different manufacturing methods have been developed for their fabrication. Some of the common technologies in micro/nano fabrication are photolithography, electron beam lithography, X-ray lithography and other semiconductor processing techniques. Although these methods are capable of fabricating micro/nano structures with a resolution of less than a few nanometers, some of the shortcomings associated with these methods, such as high production costs for customized products, limited material choices, necessitate the development of other fabricating techniques. Micro/nano mechanical machining, such an atomic force microscope (AFM) probe based nano fabrication, has, therefore, been used to overcome some the major restrictions of the traditional processes. This technique removes material from the workpiece by engaging micro/nano size cutting tool (i.e. AFM probe) and is applicable on a wider range of materials compared to the photolithographic process. In spite of the unique benefits of nano mechanical machining, there are also some challenges with this technique, since the scale is reduced, such as size effects, burr formations, chip adhesions, fragility of tools and tool wear. Moreover, AFM based machining does not have any rotational movement, which makes fabrication of 3D features more difficult. Thus, vibration-assisted machining is introduced into AFM probe based nano mechanical machining to overcome the limitations associated with the conventional AFM probe based scratching method. Vibration-assisted machining reduced the cutting forces

  8. Studying post-etching silicon crystal defects on 300mm wafer by automatic defect review AFM

    NASA Astrophysics Data System (ADS)

    Zandiatashbar, Ardavan; Taylor, Patrick A.; Kim, Byong; Yoo, Young-kook; Lee, Keibock; Jo, Ahjin; Lee, Ju Suk; Cho, Sang-Joon; Park, Sang-il

    2016-03-01

    Single crystal silicon wafers are the fundamental elements of semiconductor manufacturing industry. The wafers produced by Czochralski (CZ) process are very high quality single crystalline materials with known defects that are formed during the crystal growth or modified by further processing. While defects can be unfavorable for yield for some manufactured electrical devices, a group of defects like oxide precipitates can have both positive and negative impacts on the final device. The spatial distribution of these defects may be found by scattering techniques. However, due to limitations of scattering (i.e. light wavelength), many crystal defects are either poorly classified or not detected. Therefore a high throughput and accurate characterization of their shape and dimension is essential for reviewing the defects and proper classification. While scanning electron microscopy (SEM) can provide high resolution twodimensional images, atomic force microscopy (AFM) is essential for obtaining three-dimensional information of the defects of interest (DOI) as it is known to provide the highest vertical resolution among all techniques [1]. However AFM's low throughput, limited tip life, and laborious efforts for locating the DOI have been the limitations of this technique for defect review for 300 mm wafers. To address these limitations of AFM, automatic defect review AFM has been introduced recently [2], and is utilized in this work for studying DOI on 300 mm silicon wafer. In this work, we carefully etched a 300 mm silicon wafer with a gaseous acid in a reducing atmosphere at a temperature and for a sufficient duration to decorate and grow the crystal defects to a size capable of being detected as light scattering defects [3]. The etched defects form a shallow structure and their distribution and relative size are inspected by laser light scattering (LLS). However, several groups of defects couldn't be properly sized by the LLS due to the very shallow depth and low

  9. Comparative quantification and statistical analysis of η′ and η precipitates in aluminum alloy AA7075-T651 by TEM and AFM

    SciTech Connect

    Garcia-Garcia, Adrian Luis Dominguez-Lopez, Ivan Lopez-Jimenez, Luis Barceinas-Sanchez, J.D. Oscar

    2014-01-15

    Quantification of nanometric precipitates in metallic alloys has been traditionally performed using transmission electron microscopy, which is nominally a low throughput technique. This work presents a comparative study of quantification of η′ and η precipitates in aluminum alloy AA7075-T651 using transmission electron microscopy (TEM) and non-contact atomic force microscopy (AFM). AFM quantification was compared with 2-D stereological results reported elsewhere. Also, a method was developed, using specialized software, to characterize nanometric size precipitates observed in dark-field TEM micrographs. Statistical analysis of the quantification results from both measurement techniques supports the use of AFM for precipitate characterization. Once the precipitate stoichiometry has been determined by appropriate analytical techniques like TEM, as it is the case for η′ and η in AA7075-T651, the relative ease with which specimens are prepared for AFM analysis could be advantageous in product and process development, and quality control, where a large number of samples are expected for analysis on a regular basis. - Highlights: • Nanometric MgZn{sub 2} precipitates in AA7075-T651 were characterized using AFM and TEM. • Phase-contrast AFM was used to differentiate metal matrix from MgZn{sub 2} precipitates. • TEM and AFM micrographs were analyzed using commercially available software. • AFM image analysis and TEM 2-D stereology render statistically equivalent results.

  10. Magnetic resonance imaging: Review of imaging techniques and overview of liver imaging

    PubMed Central

    Maniam, Santhi; Szklaruk, Janio

    2010-01-01

    Magnetic resonance imaging (MRI) of the liver is slowly transitioning from a problem solving imaging modality to a first line imaging modality for many diseases of the liver. The well established advantages of MRI over other cross sectional imaging modalities may be the basis for this transition. Technological advancements in MRI that focus on producing high quality images and fast imaging, increasing diagnostic accuracy and developing newer function-specific contrast agents are essential in ensuring that MRI succeeds as a first line imaging modality. Newer imaging techniques, such as parallel imaging, are widely utilized to shorten scanning time. Diffusion weighted echo planar imaging, an adaptation from neuroimaging, is fast becoming a routine part of the MRI liver protocol to improve lesion detection and characterization of focal liver lesions. Contrast enhanced dynamic T1 weighted imaging is crucial in complete evaluation of diseases and the merit of this dynamic imaging relies heavily on the appropriate timing of the contrast injection. Newer techniques that include fluoro-triggered contrast enhanced MRI, an adaptation from 3D MRA imaging, are utilized to achieve good bolus timing that will allow for optimum scanning. For accurate interpretation of liver diseases, good understanding of the newer imaging techniques and familiarity with typical imaging features of liver diseases are essential. In this review, MR sequences for a time efficient liver MRI protocol utilizing newer imaging techniques are discussed and an overview of imaging features of selected common focal and diffuse liver diseases are presented. PMID:21160685

  11. In situ AFM imaging of Li-O2 electrochemical reaction on highly oriented pyrolytic graphite with ether-based electrolyte.

    PubMed

    Wen, Rui; Hong, Misun; Byon, Hye Ryung

    2013-07-24

    Understanding the lithium-oxygen (Li-O2) electrochemical reaction is of importance to improve reaction kinetics, efficiency, and mitigate parasitic reactions, which links to the strategy of enhanced Li-O2 battery performance. Many in situ and ex situ analyses have been reported to address chemical species of reduction intermediate and products, whereas details of the dynamic Li-O2 reaction have not as yet been fully unraveled. For this purpose, visual imaging can provide straightforward evidence, formation and decomposition of products, during the Li-O2 electrochemical reaction. Here, we present real-time and in situ views of the Li-O2 reaction using electrochemical atomic force microscopy (EC-AFM). Details of the reaction process can be observed at nano-/micrometer scale on a highly oriented pyrolytic graphite (HOPG) electrode with lithium ion-containing tetraglyme, representative of the carbon cathode and ether-based electrolyte extensively employed in the Li-O2 battery. Upon oxygen reduction reaction (ORR), rapid growth of nanoplates, having axial diameter of hundreds of nanometers, length of micrometers, and ~5 nm thickness, at a step edge of HOPG can be observed, which eventually forms a lithium peroxide (Li2O2) film. This Li2O2 film is decomposed during the oxygen evolution reaction (OER), for which the decomposition potential is related to a thickness. There is no evidence of byproduct analyzed by X-ray photoelectron spectroscopy (XPS) after first reduction and oxidation reaction. However, further cycles provide unintended products such as lithium carbonate (Li2CO3), lithium acetate, and fluorine-related species with irregular morphology due to the degradation of HOPG electrode, tetraglyme, and lithium salt. These observations provide the first visualization of Li-O2 reaction process and morphological information of Li2O2, which can allow one to build strategies to prepare the optimum conditions for the Li-O2 battery.

  12. In situ AFM imaging of Li-O2 electrochemical reaction on highly oriented pyrolytic graphite with ether-based electrolyte.

    PubMed

    Wen, Rui; Hong, Misun; Byon, Hye Ryung

    2013-07-24

    Understanding the lithium-oxygen (Li-O2) electrochemical reaction is of importance to improve reaction kinetics, efficiency, and mitigate parasitic reactions, which links to the strategy of enhanced Li-O2 battery performance. Many in situ and ex situ analyses have been reported to address chemical species of reduction intermediate and products, whereas details of the dynamic Li-O2 reaction have not as yet been fully unraveled. For this purpose, visual imaging can provide straightforward evidence, formation and decomposition of products, during the Li-O2 electrochemical reaction. Here, we present real-time and in situ views of the Li-O2 reaction using electrochemical atomic force microscopy (EC-AFM). Details of the reaction process can be observed at nano-/micrometer scale on a highly oriented pyrolytic graphite (HOPG) electrode with lithium ion-containing tetraglyme, representative of the carbon cathode and ether-based electrolyte extensively employed in the Li-O2 battery. Upon oxygen reduction reaction (ORR), rapid growth of nanoplates, having axial diameter of hundreds of nanometers, length of micrometers, and ~5 nm thickness, at a step edge of HOPG can be observed, which eventually forms a lithium peroxide (Li2O2) film. This Li2O2 film is decomposed during the oxygen evolution reaction (OER), for which the decomposition potential is related to a thickness. There is no evidence of byproduct analyzed by X-ray photoelectron spectroscopy (XPS) after first reduction and oxidation reaction. However, further cycles provide unintended products such as lithium carbonate (Li2CO3), lithium acetate, and fluorine-related species with irregular morphology due to the degradation of HOPG electrode, tetraglyme, and lithium salt. These observations provide the first visualization of Li-O2 reaction process and morphological information of Li2O2, which can allow one to build strategies to prepare the optimum conditions for the Li-O2 battery. PMID:23808397

  13. Special feature on imaging systems and techniques

    NASA Astrophysics Data System (ADS)

    Yang, Wuqiang; Giakos, George

    2013-07-01

    The IEEE International Conference on Imaging Systems and Techniques (IST'2012) was held in Manchester, UK, on 16-17 July 2012. The participants came from 26 countries or regions: Austria, Brazil, Canada, China, Denmark, France, Germany, Greece, India, Iran, Iraq, Italy, Japan, Korea, Latvia, Malaysia, Norway, Poland, Portugal, Sweden, Switzerland, Taiwan, Tunisia, UAE, UK and USA. The technical program of the conference consisted of a series of scientific and technical sessions, exploring physical principles, engineering and applications of new imaging systems and techniques, as reflected by the diversity of the submitted papers. Following a rigorous review process, a total of 123 papers were accepted, and they were organized into 30 oral presentation sessions and a poster session. In addition, six invited keynotes were arranged. The conference not only provided the participants with a unique opportunity to exchange ideas and disseminate research outcomes but also paved a way to establish global collaboration. Following the IST'2012, a total of 55 papers, which were technically extended substantially from their versions in the conference proceeding, were submitted as regular papers to this special feature of Measurement Science and Technology . Following a rigorous reviewing process, 25 papers have been finally accepted for publication in this special feature and they are organized into three categories: (1) industrial tomography, (2) imaging systems and techniques and (3) image processing. These papers not only present the latest developments in the field of imaging systems and techniques but also offer potential solutions to existing problems. We hope that this special feature provides a good reference for researchers who are active in the field and will serve as a catalyst to trigger further research. It has been our great pleasure to be the guest editors of this special feature. We would like to thank the authors for their contributions, without which it would

  14. Multiresolution segmentation technique for spine MRI images

    NASA Astrophysics Data System (ADS)

    Li, Haiyun; Yan, Chye H.; Ong, Sim Heng; Chui, Cheekong K.; Teoh, Swee H.

    2002-05-01

    In this paper, we describe a hybrid method for segmentation of spinal magnetic resonance imaging that has been developed based on the natural phenomenon of stones appearing as water recedes. The candidate segmentation region corresponds to the stones with characteristics similar to that of intensity extrema, edges, intensity ridge and grey-level blobs. The segmentation method is implemented based on a combination of wavelet multiresolution decomposition and fuzzy clustering. First thresholding is performed dynamically according to local characteristic to detect possible target areas, We then use fuzzy c-means clustering in concert with wavelet multiscale edge detection to identify the maximum likelihood anatomical and functional target areas. Fuzzy C-Means uses iterative optimization of an objective function based on a weighted similarity measure between the pixels in the image and each of c cluster centers. Local extrema of this objective function are indicative of an optimal clustering of the input data. The multiscale edges can be detected and characterized from local maxima of the modulus of the wavelet transform while the noise can be reduced to some extent by enacting thresholds. The method provides an efficient and robust algorithm for spinal image segmentation. Examples are presented to demonstrate the efficiency of the technique on some spinal MRI images.

  15. Visualization of internal structure of banana starch granule through AFM.

    PubMed

    Peroni-Okita, Fernanda H G; Gunning, A Patrick; Kirby, Andrew; Simão, Renata A; Soares, Claudinéia A; Cordenunsi, Beatriz R

    2015-09-01

    Atomic force microscopy (AFM) is a high resolution technique for studying the external and internal structures of starch granules. For this purpose granules were isolated from bananas and embedded in a non-penetrating resin. To achieve image contrast of the ultrastructure, the face of the cut blocks were wetted in steam and force modulation mode imaging was used. Images of starch from green bananas showed large variation of height across the granule due to a locational specific absorption of water and swelling of amorphous regions; the data reveal that the center of the granules are structurally different and have different viscoelastic properties. Images of starches from ripe bananas showed an even greater different level of organization: absence of growth rings around the hilum; the central region of the granule is richer in amylose; very porous surface with round shaped dark structures; the size of blocklets are larger than the green fruits. PMID:26005137

  16. Techniques calm fear of imaging machine

    SciTech Connect

    Van Pelt, D.

    1990-04-02

    Magnetic resonance imaging has become a valuable tool in diagnosing diseases, and the imaging devices are now used as often as 2 million times a year in the United States. But as many as 10 percent of patients advised to undergo the procedure cannot because they become overwhelmed with claustrophobialike fear triggered by having to lie motionless in the machine's tunnel-like cylinder for about 45 minutes. To counteract this fear, several hospitals now practice various techniques to help reduce the feelings of confinement. One popular method is to give a patient special eyeglasses that allow him to look beyond his feet and see the tunnel opening. Other glasses use mirrors to direct the patient's vision out the back of the unit to large wilderness photographs or murals that simulate a sense of spaciousness. Even a basic item like a set of headphones that plays music can often distract a patient, and technicians frequently hold a patient's hand or foot during the procedure. Another trick is to invite family members and friends to remain with the patient during the scan to provide company and reassurance.

  17. Bone feature analysis using image processing techniques.

    PubMed

    Liu, Z Q; Austin, T; Thomas, C D; Clement, J G

    1996-01-01

    In order to establish the correlation between bone structure and age, and information about age-related bone changes, it is necessary to study microstructural features of human bone. Traditionally, in bone biology and forensic science, the analysis if bone cross-sections has been carried out manually. Such a process is known to be slow, inefficient and prone to human error. Consequently, the results obtained so far have been unreliable. In this paper we present a new approach to quantitative analysis of cross-sections of human bones using digital image processing techniques. We demonstrate that such a system is able to extract various bone features consistently and is capable of providing more reliable data and statistics for bones. Consequently, we will be able to correlate features of bone microstructure with age and possibly also with age related bone diseases such as osteoporosis. The development of knowledge-based computer vision-systems for automated bone image analysis can now be considered feasible.

  18. Wavelet Technique Applications in Planetary Nebulae Images

    NASA Astrophysics Data System (ADS)

    Leal Ferreira, M. L.; Rabaça, C. R.; Cuisinier, F.; Epitácio Pereira, D. N.

    2009-05-01

    Through the application of the wavelet technique to a planetary nebulae image, we are able to identify different scale sizes structures present in its wavelet coefficient decompositions. In a multiscale vision model, an object is defined as a hierarchical set of these structures. We can then use this model to independently reconstruct the different objects that compose the nebulae. The result is the separation and identification of superposed objects, some of them with very low surface brightness, what makes them, in general, very difficult to be seen in the original images due to the presence of noise. This allows us to make a more detailed analysis of brightness distribution in these sources. In this project, we use this method to perform a detailed morphological study of some planetary nebulae and to investigate whether one of them indeed shows internal temperature fluctuations. We have also conducted a series of tests concerning the reliability of the method and the confidence level of the objects detected. The wavelet code used in this project is called OV_WAV and was developed by the UFRJ's Astronomy Departament team.

  19. Mathematical Morphology Techniques For Image Processing Applications In Biomedical Imaging

    NASA Astrophysics Data System (ADS)

    Bartoo, Grace T.; Kim, Yongmin; Haralick, Robert M.; Nochlin, David; Sumi, Shuzo M.

    1988-06-01

    Mathematical morphology operations allow object identification based on shape and are useful for grouping a cluster of small objects into one object. Because of these capabilities, we have implemented and evaluated this technique for our study of Alzheimer's disease. The microscopic hallmark of Alzheimer's disease is the presence of brain lesions known as neurofibrillary tangles and senile plaques. These lesions have distinct shapes compared to normal brain tissue. Neurofibrillary tangles appear as flame-shaped structures, whereas senile plaques appear as circular clusters of small objects. In order to quantitatively analyze the distribution of these lesions, we have developed and applied the tools of mathematical morphology on the Pixar Image Computer. As a preliminary test of the accuracy of the automatic detection algorithm, a study comparing computer and human detection of senile plaques was performed by evaluating 50 images from 5 different patients. The results of this comparison demonstrates that the computer counts correlate very well with the human counts (correlation coefficient = .81). Now that the basic algorithm has been shown to work, optimization of the software will be performed to improve its speed. Also future improvements such as local adaptive thresholding will be made to the image analysis routine to further improve the systems accuracy.

  20. Accurate and precise calibration of AFM cantilever spring constants using laser Doppler vibrometry.

    PubMed

    Gates, Richard S; Pratt, Jon R

    2012-09-21

    Accurate cantilever spring constants are important in atomic force microscopy both in control of sensitive imaging and to provide correct nanomechanical property measurements. Conventional atomic force microscope (AFM) spring constant calibration techniques are usually performed in an AFM. They rely on significant handling and often require touching the cantilever probe tip to a surface to calibrate the optical lever sensitivity of the configuration. This can damage the tip. The thermal calibration technique developed for laser Doppler vibrometry (LDV) can be used to calibrate cantilevers without handling or touching the tip to a surface. Both flexural and torsional spring constants can be measured. Using both Euler-Bernoulli modeling and an SI traceable electrostatic force balance technique as a comparison we demonstrate that the LDV thermal technique is capable of providing rapid calibrations with a combination of ease, accuracy and precision beyond anything previously available.

  1. Nanoscale structural features determined by AFM for single virus particles.

    PubMed

    Chen, Shu-wen W; Odorico, Michael; Meillan, Matthieu; Vellutini, Luc; Teulon, Jean-Marie; Parot, Pierre; Bennetau, Bernard; Pellequer, Jean-Luc

    2013-11-21

    In this work, we propose "single-image analysis", as opposed to multi-image averaging, for extracting valuable information from AFM images of single bio-particles. This approach allows us to study molecular systems imaged by AFM under general circumstances without restrictions on their structural forms. As feature exhibition is a resolution correlation, we have performed AFM imaging on surfaces of tobacco mosaic virus (TMV) to demonstrate variations of structural patterns with probing resolution. Two AFM images were acquired with the same tip at different probing resolutions in terms of pixel width, i.e., 1.95 and 0.49 nm per pixel. For assessment, we have constructed an in silico topograph based on the three-dimensional crystal structure of TMV as a reference. The prominent artifacts observed in the AFM-determined shape of TMV were attributed to tip convolutions. The width of TMV rod was systematically overestimated by ~10 nm at both probing resolutions of AFM. Nevertheless, the effects of tip convolution were less severe in vertical orientation so that the estimated height of TMV by AFM imaging was in close agreement with the in silico X-ray topograph. Using dedicated image processing algorithms, we found that at low resolution (i.e., 1.95 nm per pixel), the extracted surface features of TMV can be interpreted as a partial or full helical repeat (three complete turns with ~7.0 nm in length), while individual protein subunits (~2.5 nm) were perceivable only at high resolution. The present study shows that the scales of revealed structural features in AFM images are subject to both probing resolution and processing algorithms for image analysis. PMID:24056758

  2. Advanced Millimeter-Wave Security Portal Imaging Techniques

    SciTech Connect

    Sheen, David M.; Bernacki, Bruce E.; McMakin, Douglas L.

    2012-04-01

    Millimeter-wave imaging is rapidly gaining acceptance for passenger screening at airports and other secured facilities. This paper details a number of techniques developed over the last several years including novel image reconstruction and display techniques, polarimetric imaging techniques, array switching schemes, as well as high frequency high bandwidth techniques. Implementation of some of these methods will increase the cost and complexity of the mm-wave security portal imaging systems. RF photonic methods may provide new solutions to the design and development of the sequentially switched linear mm-wave arrays that are the key element in the mm-wave portal imaging systems.

  3. A Literature Review on Image Encryption Techniques

    NASA Astrophysics Data System (ADS)

    Khan, Majid; Shah, Tariq

    2014-12-01

    Image encryption plays a paramount part to guarantee classified transmission and capacity of image over web. Then again, a real-time image encryption confronts a more noteworthy test because of vast measure of information included. This paper exhibits an audit on image encryption in spatial, frequency and hybrid domains with both full encryption and selective encryption strategy.

  4. A review of imaging techniques for plant phenotyping.

    PubMed

    Li, Lei; Zhang, Qin; Huang, Danfeng

    2014-01-01

    Given the rapid development of plant genomic technologies, a lack of access to plant phenotyping capabilities limits our ability to dissect the genetics of quantitative traits. Effective, high-throughput phenotyping platforms have recently been developed to solve this problem. In high-throughput phenotyping platforms, a variety of imaging methodologies are being used to collect data for quantitative studies of complex traits related to the growth, yield and adaptation to biotic or abiotic stress (disease, insects, drought and salinity). These imaging techniques include visible imaging (machine vision), imaging spectroscopy (multispectral and hyperspectral remote sensing), thermal infrared imaging, fluorescence imaging, 3D imaging and tomographic imaging (MRT, PET and CT). This paper presents a brief review on these imaging techniques and their applications in plant phenotyping. The features used to apply these imaging techniques to plant phenotyping are described and discussed in this review. PMID:25347588

  5. A Review of Imaging Techniques for Plant Phenotyping

    PubMed Central

    Li, Lei; Zhang, Qin; Huang, Danfeng

    2014-01-01

    Given the rapid development of plant genomic technologies, a lack of access to plant phenotyping capabilities limits our ability to dissect the genetics of quantitative traits. Effective, high-throughput phenotyping platforms have recently been developed to solve this problem. In high-throughput phenotyping platforms, a variety of imaging methodologies are being used to collect data for quantitative studies of complex traits related to the growth, yield and adaptation to biotic or abiotic stress (disease, insects, drought and salinity). These imaging techniques include visible imaging (machine vision), imaging spectroscopy (multispectral and hyperspectral remote sensing), thermal infrared imaging, fluorescence imaging, 3D imaging and tomographic imaging (MRT, PET and CT). This paper presents a brief review on these imaging techniques and their applications in plant phenotyping. The features used to apply these imaging techniques to plant phenotyping are described and discussed in this review. PMID:25347588

  6. Application of image fusion techniques in DSA

    NASA Astrophysics Data System (ADS)

    Ye, Feng; Wu, Jian; Cui, Zhiming; Xu, Jing

    2007-12-01

    Digital subtraction angiography (DSA) is an important technology in both medical diagnoses and interposal therapy, which can eliminate the interferential background and give prominence to blood vessels by computer processing. After contrast material is injected into an artery or vein, a physician produces fluoroscopic images. Using these digitized images, a computer subtracts the image made with contrast material from a series of post injection images made without background information. By analyzing the characteristics of DSA medical images, this paper provides a solution of image fusion which is in allusion to the application of DSA subtraction. We fuse the images of angiogram and subtraction, in order to obtain the new image which has more data information. The image that fused by wavelet transform can display the blood vessels and background information clearly, and medical experts gave high score on the effect of it.

  7. Imaging techniques: MRI illuminated by γ-rays

    NASA Astrophysics Data System (ADS)

    Bowtell, Richard

    2016-09-01

    A technique that combines magnetic resonance with nuclear medicine has been used to image the distribution of a radioactive tracer, potentially opening up a powerful and innovative approach to medical imaging. See Letter p.652

  8. Microbial Cell Imaging

    SciTech Connect

    Doktycz, Mitchel John; Sullivan, Claretta; Mortensen, Ninell P; Allison, David P

    2011-01-01

    Atomic force microscopy (AFM) is finding increasing application in a variety of fields including microbiology. Until the emergence of AFM, techniques for ivnestigating processes in single microbes were limited. From a biologist's perspective, the fact that AFM can be used to generate high-resolution images in buffers or media is its most appealing feature as live-cell imaging can be pursued. Imaging living cells by AFM allows dynamic biological events to be studied, at the nanoscale, in real time. Few areas of biological research have as much to gain as microbiology from the application of AFM. Whereas the scale of microbes places them near the limit of resolution for light microscopy. AFM is well suited for the study of structures on the order of a micron or less. Although electron microscopy techniques have been the standard for high-resolution imaging of microbes, AFM is quickly gaining favor for several reasons. First, fixatives that impair biological activity are not required. Second, AFM is capable of detecting forces in the pN range, and precise control of the force applied to the cantilever can be maintained. This combination facilitates the evaluation of physical characteristics of microbes. Third, rather than yielding the composite, statistical average of cell populations, as is the case with many biochemical assays, the behavior of single cells can be monitored. Despite the potential of AFM in microbiology, there are several limitations that must be considered. For example, the time required to record an image allows for the study of gross events such as cell division or membrane degradation from an antibiotic but precludes the evaluation of biological reactions and events that happen in just fractions of a second. Additionally, the AFM is a topographical tool and is restricted to imaging surfaces. Therefore, it cannot be used to look inside cells as with opticla and transmission electron microscopes. other practical considerations are the limitation on

  9. Spectral OCT techniques in eye imaging

    NASA Astrophysics Data System (ADS)

    Kowalczyk, Andrzej; Wojtkowski, Maciej

    2002-02-01

    This contribution presents examples of images of eye in vitro obtained by spectral optical tomography (OCT). Particular interest was focused on obtaining clear images of the corneo-scleral angle and images of fundus which are both essential for diagnosing and planning of a treatment of glaucoma.

  10. Direct observation of hydration of TiO 2 on Ti using electrochemical AFM: freely corroding versus potentiostatically held

    NASA Astrophysics Data System (ADS)

    Bearinger, Jane P.; Orme, Christine A.; Gilbert, Jeremy L.

    2001-10-01

    Hydration of titanium/titanium oxide surfaces under freely corroding and potentiostatically held conditions has been characterized using electrochemical atomic force microscopy (EC AFM). In contrast to conventional high vacuum techniques, AFM enables measurement of morphological surface structure in the in situ hydrated state. Electrochemical probes in the imaging environment further enable acquisition of electrical characteristics during AFM imaging. Experiments were performed on etched, electropolished commercially pure titanium. As noted by direct observation and corroborated by power spectral density (Fourier analysis) measurements, oxide domes cover the titanium surface and grow laterally during hydration. Applied potential altered the growth rate. Under open circuit potential conditions, growth proceeded approximately six times faster than under a -1 V applied voltage ( 1098±52 nm2/ min ± versus 184.84±19 nm2/min). Film growth increased electrical resistance and lowered interfacial capacitance based on step polarization impedance spectroscopy tests.

  11. New impedance and electrochemical image techniques for biological applications

    NASA Astrophysics Data System (ADS)

    Tao, N. J.

    2010-03-01

    A method to image local surface impedance and electrochemical current optically is developed for biological applications. The principle of the impedance imaging is based on sensitive dependence of surface plasmon resonance (SPR) on local surface charge density. The technique can image local surface impedance and charge while providing simultaneously a conventional surface plasmon resonance (SPR) image. By applying a potential modulation to a sensor surface, it is possible to obtain an image of the DC component, and the amplitude and phase images of the AC component. The DC image provides local molecular binding, as found in the conventional SPR imaging technique. The AC images are directly related to the local impedance of the surface. This imaging capability may be used as a new detection platform for DNA and protein microarrays, a new method for analyzing local molecular binding and interfacial processes and a new tool for imaging cells and tissues.

  12. Imaging fault zones using 3D seismic image processing techniques

    NASA Astrophysics Data System (ADS)

    Iacopini, David; Butler, Rob; Purves, Steve

    2013-04-01

    Significant advances in structural analysis of deep water structure, salt tectonic and extensional rift basin come from the descriptions of fault system geometries imaged in 3D seismic data. However, even where seismic data are excellent, in most cases the trajectory of thrust faults is highly conjectural and still significant uncertainty exists as to the patterns of deformation that develop between the main faults segments, and even of the fault architectures themselves. Moreover structural interpretations that conventionally define faults by breaks and apparent offsets of seismic reflectors are commonly conditioned by a narrow range of theoretical models of fault behavior. For example, almost all interpretations of thrust geometries on seismic data rely on theoretical "end-member" behaviors where concepts as strain localization or multilayer mechanics are simply avoided. Yet analogue outcrop studies confirm that such descriptions are commonly unsatisfactory and incomplete. In order to fill these gaps and improve the 3D visualization of deformation in the subsurface, seismic attribute methods are developed here in conjunction with conventional mapping of reflector amplitudes (Marfurt & Chopra, 2007)). These signal processing techniques recently developed and applied especially by the oil industry use variations in the amplitude and phase of the seismic wavelet. These seismic attributes improve the signal interpretation and are calculated and applied to the entire 3D seismic dataset. In this contribution we will show 3D seismic examples of fault structures from gravity-driven deep-water thrust structures and extensional basin systems to indicate how 3D seismic image processing methods can not only build better the geometrical interpretations of the faults but also begin to map both strain and damage through amplitude/phase properties of the seismic signal. This is done by quantifying and delineating the short-range anomalies on the intensity of reflector amplitudes

  13. A content-based image retrieval method for optical colonoscopy images based on image recognition techniques

    NASA Astrophysics Data System (ADS)

    Nosato, Hirokazu; Sakanashi, Hidenori; Takahashi, Eiichi; Murakawa, Masahiro

    2015-03-01

    This paper proposes a content-based image retrieval method for optical colonoscopy images that can find images similar to ones being diagnosed. Optical colonoscopy is a method of direct observation for colons and rectums to diagnose bowel diseases. It is the most common procedure for screening, surveillance and treatment. However, diagnostic accuracy for intractable inflammatory bowel diseases, such as ulcerative colitis (UC), is highly dependent on the experience and knowledge of the medical doctor, because there is considerable variety in the appearances of colonic mucosa within inflammations with UC. In order to solve this issue, this paper proposes a content-based image retrieval method based on image recognition techniques. The proposed retrieval method can find similar images from a database of images diagnosed as UC, and can potentially furnish the medical records associated with the retrieved images to assist the UC diagnosis. Within the proposed method, color histogram features and higher order local auto-correlation (HLAC) features are adopted to represent the color information and geometrical information of optical colonoscopy images, respectively. Moreover, considering various characteristics of UC colonoscopy images, such as vascular patterns and the roughness of the colonic mucosa, we also propose an image enhancement method to highlight the appearances of colonic mucosa in UC. In an experiment using 161 UC images from 32 patients, we demonstrate that our method improves the accuracy of retrieving similar UC images.

  14. An image compression technique for use on token ring networks

    NASA Astrophysics Data System (ADS)

    Gorjala, B.; Sayood, Khalid; Meempat, G.

    1992-12-01

    A low complexity technique for compression of images for transmission over local area networks is presented. The technique uses the synchronous traffic as a side channel for improving the performance of an adaptive differential pulse code modulation (ADPCM) based coder.

  15. An image compression technique for use on token ring networks

    NASA Technical Reports Server (NTRS)

    Gorjala, B.; Sayood, Khalid; Meempat, G.

    1992-01-01

    A low complexity technique for compression of images for transmission over local area networks is presented. The technique uses the synchronous traffic as a side channel for improving the performance of an adaptive differential pulse code modulation (ADPCM) based coder.

  16. Selective document image data compression technique

    DOEpatents

    Fu, C.Y.; Petrich, L.I.

    1998-05-19

    A method of storing information from filled-in form-documents comprises extracting the unique user information in the foreground from the document form information in the background. The contrast of the pixels is enhanced by a gamma correction on an image array, and then the color value of each of pixel is enhanced. The color pixels lying on edges of an image are converted to black and an adjacent pixel is converted to white. The distance between black pixels and other pixels in the array is determined, and a filled-edge array of pixels is created. User information is then converted to a two-color format by creating a first two-color image of the scanned image by converting all pixels darker than a threshold color value to black. All the pixels that are lighter than the threshold color value to white. Then a second two-color image of the filled-edge file is generated by converting all pixels darker than a second threshold value to black and all pixels lighter than the second threshold color value to white. The first two-color image and the second two-color image are then combined and filtered to smooth the edges of the image. The image may be compressed with a unique Huffman coding table for that image. The image file is also decimated to create a decimated-image file which can later be interpolated back to produce a reconstructed image file using a bilinear interpolation kernel. 10 figs.

  17. Selective document image data compression technique

    DOEpatents

    Fu, Chi-Yung; Petrich, Loren I.

    1998-01-01

    A method of storing information from filled-in form-documents comprises extracting the unique user information in the foreground from the document form information in the background. The contrast of the pixels is enhanced by a gamma correction on an image array, and then the color value of each of pixel is enhanced. The color pixels lying on edges of an image are converted to black and an adjacent pixel is converted to white. The distance between black pixels and other pixels in the array is determined, and a filled-edge array of pixels is created. User information is then converted to a two-color format by creating a first two-color image of the scanned image by converting all pixels darker than a threshold color value to black. All the pixels that are lighter than the threshold color value to white. Then a second two-color image of the filled-edge file is generated by converting all pixels darker than a second threshold value to black and all pixels lighter than the second threshold color value to white. The first two-color image and the second two-color image are then combined and filtered to smooth the edges of the image. The image may be compressed with a unique Huffman coding table for that image. The image file is also decimated to create a decimated-image file which can later be interpolated back to produce a reconstructed image file using a bilinear interpolation kernel.--(235 words)

  18. Robust image modeling techniques with an image restoration application

    NASA Astrophysics Data System (ADS)

    Kashyap, Rangasami L.; Eom, Kie-Bum

    1988-08-01

    A robust parameter-estimation algorithm for a nonsymmetric half-plane (NSHP) autoregressive model, where the driving noise is a mixture of a Gaussian and an outlier process, is presented. The convergence of the estimation algorithm is proved. An algorithm to estimate parameters and original image intensity simultaneously from the impulse-noise-corrupted image, where the model governing the image is not available, is also presented. The robustness of the parameter estimates is demonstrated by simulation. Finally, an algorithm to restore realistic images is presented. The entire image generally does not obey a simple image model, but a small portion (e.g., 8 x 8) of the image is assumed to obey an NSHP model. The original image is divided into windows and the robust estimation algorithm is applied for each window. The restoration algorithm is tested by comparing it to traditional methods on several different images.

  19. Various diffusion magnetic resonance imaging techniques for pancreatic cancer

    PubMed Central

    Tang, Meng-Yue; Zhang, Xiao-Ming; Chen, Tian-Wu; Huang, Xiao-Hua

    2015-01-01

    Pancreatic cancer is one of the most common malignant tumors and remains a treatment-refractory cancer with a poor prognosis. Currently, the diagnosis of pancreatic neoplasm depends mainly on imaging and which methods are conducive to detecting small lesions. Compared to the other techniques, magnetic resonance imaging (MRI) has irreplaceable advantages and can provide valuable information unattainable with other noninvasive or minimally invasive imaging techniques. Advances in MR hardware and pulse sequence design have particularly improved the quality and robustness of MRI of the pancreas. Diffusion MR imaging serves as one of the common functional MRI techniques and is the only technique that can be used to reflect the diffusion movement of water molecules in vivo. It is generally known that diffusion properties depend on the characterization of intrinsic features of tissue microdynamics and microstructure. With the improvement of the diffusion models, diffusion MR imaging techniques are increasingly varied, from the simplest and most commonly used technique to the more complex. In this review, the various diffusion MRI techniques for pancreatic cancer are discussed, including conventional diffusion weighted imaging (DWI), multi-b DWI based on intra-voxel incoherent motion theory, diffusion tensor imaging and diffusion kurtosis imaging. The principles, main parameters, advantages and limitations of these techniques, as well as future directions for pancreatic diffusion imaging are also discussed. PMID:26753059

  20. High-speed spiral imaging technique for an atomic force microscope using a linear quadratic Gaussian controller

    NASA Astrophysics Data System (ADS)

    Habibullah, H.; Pota, H. R.; Petersen, I. R.

    2014-03-01

    This paper demonstrates a high-speed spiral imaging technique for an atomic force microscope (AFM). As an alternative to traditional raster scanning, an approach of gradient pulsing using a spiral line is implemented and spirals are generated by applying single-frequency cosine and sine waves of slowly varying amplitudes to the X and Y-axes of the AFM's piezoelectric tube scanner (PTS). Due to these single-frequency sinusoidal input signals, the scanning process can be faster than that of conventional raster scanning. A linear quadratic Gaussian controller is designed to track the reference sinusoid and a vibration compensator is combined to damp the resonant mode of the PTS. An internal model of the reference sinusoidal signal is included in the plant model and an integrator for the system error is introduced in the proposed control scheme. As a result, the phase error between the input and output sinusoids from the X and Y-PTSs is reduced. The spirals produced have particularly narrow-band frequency measures which change slowly over time, thereby making it possible for the scanner to achieve improved tracking and continuous high-speed scanning rather than being restricted to the back and forth motion of raster scanning. As part of the post-processing of the experimental data, a fifth-order Butterworth filter is used to filter noises in the signals emanating from the position sensors and a Gaussian image filter is used to filter the images. A comparison of images scanned using the proposed controller (spiral) and the AFM PI controller (raster) shows improvement in the scanning rate using the proposed method.

  1. Unconventional techniques of fundus imaging: A review

    PubMed Central

    Shanmugam, Mahesh P; Mishra, Divyansh Kailash Chandra; Rajesh, R; Madhukumar, R

    2015-01-01

    The methods of fundus examination include direct and indirect ophthalmoscopy and imaging with a fundus camera are an essential part of ophthalmic practice. The usage of unconventional equipment such as a hand-held video camera, smartphone, and a nasal endoscope allows one to image the fundus with advantages and some disadvantages. The advantages of these instruments are the cost-effectiveness, ultra portability and ability to obtain images in a remote setting and share the same electronically. These instruments, however, are unlikely to replace the fundus camera but then would always be an additional arsenal in an ophthalmologist's armamentarium. PMID:26458475

  2. Fingerprint image enhancement using CNN filtering techniques.

    PubMed

    Saatci, Ertugrul; Tavsanoglu, Vedat

    2003-12-01

    Due to noisy acquisition devices and variation in impression conditions, the ridgelines of fingerprint images are mostly corrupted by various kinds of noise causing cracks, scratches and bridges in the ridges as well as blurs. These cause matching errors in fingerprint recognition. For an effective recognition the correct ridge pattern is essential which requires the enhancement of fingerprint images. Segment by segment analysis of the fingerprint pattern yields various ridge direction and frequencies. By selecting a directional filter with correct filter parameters to match ridge features at each point, we can effectively enhance fingerprint ridges. This paper proposes a fingerprint image enhancement based on CNN Gabor-Type filters.

  3. Partial-transfer absorption imaging: a versatile technique for optimal imaging of ultracold gases.

    PubMed

    Ramanathan, Anand; Muniz, Sérgio R; Wright, Kevin C; Anderson, Russell P; Phillips, William D; Helmerson, Kristian; Campbell, Gretchen K

    2012-08-01

    Partial-transfer absorption imaging is a tool that enables optimal imaging of atomic clouds for a wide range of optical depths. In contrast to standard absorption imaging, the technique can be minimally destructive and can be used to obtain multiple successive images of the same sample. The technique involves transferring a small fraction of the sample from an initial internal atomic state to an auxiliary state and subsequently imaging that fraction absorptively on a cycling transition. The atoms remaining in the initial state are essentially unaffected. We demonstrate the technique, discuss its applicability, and compare its performance as a minimally destructive technique to that of phase-contrast imaging.

  4. Three-dimensional imaging techniques: A literature review

    PubMed Central

    Karatas, Orhan Hakki; Toy, Ebubekir

    2014-01-01

    Imaging is one of the most important tools for orthodontists to evaluate and record size and form of craniofacial structures. Orthodontists routinely use 2-dimensional (2D) static imaging techniques, but deepness of structures cannot be obtained and localized with 2D imaging. Three-dimensional (3D) imaging has been developed in the early of 1990's and has gained a precious place in dentistry, especially in orthodontics. The aims of this literature review are to summarize the current state of the 3D imaging techniques and to evaluate the applications in orthodontics. PMID:24966761

  5. Hepatic MR imaging techniques, optimization, and artifacts.

    PubMed

    Guglielmo, Flavius F; Mitchell, Donald G; Roth, Christopher G; Deshmukh, Sandeep

    2014-08-01

    This article describes a basic 1.5-T hepatic magnetic resonance (MR) imaging protocol, strategies for optimizing pulse sequences while managing artifacts, the proper timing of postgadolinium 3-dimensional gradient echo sequences, and an effective order of performing pulse sequences with the goal of creating an efficient and high-quality hepatic MR imaging examination. The authors have implemented this general approach on General Electric, Philips, and Siemens clinical scanners.

  6. Newer Imaging Techniques for Bronchopulmonary Dysplasia.

    PubMed

    Walkup, Laura L; Woods, Jason C

    2015-12-01

    Imaging has played a vital role in the clinical assessment of bronchopulmonary dysplasia (BPD) since its first recognition. In this review, how chest radiograph, computerized tomography (CT), nuclear medicine, and MRI have contributed to the understanding of BPD pathology and how emerging advancements in these methods, including low-dose and quantitative CT, sophisticated proton and hyperpolarized-gas MRI, influence the future of BPD imaging are discussed. PMID:26593084

  7. Pupil-plane speckle imaging with a referenced polarization technique.

    PubMed

    Boger, J K

    1999-05-01

    Pupil-plane speckle imaging is demonstrated by use of a polarimeter to estimate the complex wave front from an actively illuminated target. An experimental technique, referenced polarization imaging (RPI), closely parallels optical heterodyne imaging but is easier to perform in a laboratory. Further, RPI is less sensitive to target motions than the heterodyne method. The RPI technique is described, along with experimental results. PMID:18073799

  8. Technique for identifying, tracing, or tracking objects in image data

    DOEpatents

    Anderson, Robert J.; Rothganger, Fredrick

    2012-08-28

    A technique for computer vision uses a polygon contour to trace an object. The technique includes rendering a polygon contour superimposed over a first frame of image data. The polygon contour is iteratively refined to more accurately trace the object within the first frame after each iteration. The refinement includes computing image energies along lengths of contour lines of the polygon contour and adjusting positions of the contour lines based at least in part on the image energies.

  9. Raman and AFM study of gamma irradiated plastic bottle sheets

    NASA Astrophysics Data System (ADS)

    Ali, Yasir; Kumar, Vijay; Sonkawade, R. G.; Dhaliwal, A. S.

    2013-02-01

    In this investigation, the effects of gamma irradiation on the structural properties of plastic bottle sheet are studied. The Plastic sheets were exposed with 1.25MeV 60Co gamma rays source at various dose levels within the range from 0-670 kGy. The induced modifications were followed by micro-Raman and atomic force microscopy (AFM). The Raman spectrum shows the decrease in Raman intensity and formation of unsaturated bonds with an increase in the gamma dose. AFM image displays rough surface morphology after irradiation. The detailed Raman analysis of plastic bottle sheets is presented here, and the results are correlated with the AFM observations.

  10. Raman and AFM study of gamma irradiated plastic bottle sheets

    SciTech Connect

    Ali, Yasir; Kumar, Vijay; Dhaliwal, A. S.; Sonkawade, R. G.

    2013-02-05

    In this investigation, the effects of gamma irradiation on the structural properties of plastic bottle sheet are studied. The Plastic sheets were exposed with 1.25MeV {sup 60}Co gamma rays source at various dose levels within the range from 0-670 kGy. The induced modifications were followed by micro-Raman and atomic force microscopy (AFM). The Raman spectrum shows the decrease in Raman intensity and formation of unsaturated bonds with an increase in the gamma dose. AFM image displays rough surface morphology after irradiation. The detailed Raman analysis of plastic bottle sheets is presented here, and the results are correlated with the AFM observations.

  11. Image processing technique based on image understanding architecture

    NASA Astrophysics Data System (ADS)

    Kuvychko, Igor

    2000-12-01

    Effectiveness of image applications is directly based on its abilities to resolve ambiguity and uncertainty in the real images. That requires tight integration of low-level image processing with high-level knowledge-based reasoning, which is the solution of the image understanding problem. This article presents a generic computational framework necessary for the solution of image understanding problem -- Spatial Turing Machine. Instead of tape of symbols, it works with hierarchical networks dually represented as discrete and continuous structures. Dual representation provides natural transformation of the continuous image information into the discrete structures, making it available for analysis. Such structures are data and algorithms at the same time and able to perform graph and diagrammatic operations being the basis of intelligence. They can create derivative structures that play role of context, or 'measurement device,' giving the ability to analyze, and run top-bottom algorithms. Symbols naturally emerge there, and symbolic operations work in combination with new simplified methods of computational intelligence. That makes images and scenes self-describing, and provides flexible ways of resolving uncertainty. Classification of images truly invariant to any transformation could be done via matching their derivative structures. New proposed architecture does not require supercomputers, opening ways to the new image technologies.

  12. Digital Image Enhancement Techniques For Nondestructive Evaluation

    NASA Astrophysics Data System (ADS)

    Merenyi, Robert; Heller, Warren

    1986-11-01

    Computer image enhancement of digitized radiographic and conventional photographs have taken advantage of several unique state-of-the-art developments to reveal anomalies in aerospace hardware. Signal processing of such imagery at TASC includes multi-frame averaging to increase signal-to-noise levels, applying specially-developed filters to sharpen details without sacrificing image information, and performing local contrast stretch and histogram equalization to display structure in low-contrast areas. Edge detection, normally complicated in radiographic images by low-contrast, poor spatial resolution, and noise, is performed as a post-processing operation and utilizes a difference-of-Gaussians method and a least-squares fitting procedure. With these software tools, multi-image signal processing allows for the precise measurement (to within + 0.02 inches, rms) of structural motion within a rocket motor during a static test firing as well as identifying stress conditions in turbine blades and matrix anomalies in composite materials. These and other image enhancement examples of aerospace hardware analysis are detailed in the presentation.

  13. Real-time optical image processing techniques

    NASA Technical Reports Server (NTRS)

    Liu, Hua-Kuang

    1988-01-01

    Nonlinear real-time optical processing on spatial pulse frequency modulation has been pursued through the analysis, design, and fabrication of pulse frequency modulated halftone screens and the modification of micro-channel spatial light modulators (MSLMs). Micro-channel spatial light modulators are modified via the Fabry-Perot method to achieve the high gamma operation required for non-linear operation. Real-time nonlinear processing was performed using the halftone screen and MSLM. The experiments showed the effectiveness of the thresholding and also showed the needs of higher SBP for image processing. The Hughes LCLV has been characterized and found to yield high gamma (about 1.7) when operated in low frequency and low bias mode. Cascading of two LCLVs should also provide enough gamma for nonlinear processing. In this case, the SBP of the LCLV is sufficient but the uniformity of the LCLV needs improvement. These include image correlation, computer generation of holograms, pseudo-color image encoding for image enhancement, and associative-retrieval in neural processing. The discovery of the only known optical method for dynamic range compression of an input image in real-time by using GaAs photorefractive crystals is reported. Finally, a new architecture for non-linear multiple sensory, neural processing has been suggested.

  14. Externally triggered imaging technique for microbolometer-type terahertz imager

    NASA Astrophysics Data System (ADS)

    Oda, Naoki; Sudou, Takayuki; Ishi, Tsutomu; Okubo, Syuichi; Isoyama, Goro; Irizawa, Akinori; Kawase, Keigo; Kato, Ryukou

    2016-04-01

    The authors developed terahertz (THz) imager which incorporates 320x240 focal plane array (FPA) with enhanced sensitivity in sub-THz region (ca. 0.5 THz). The imager includes functions such as external-trigger imaging, lock-in imaging, beam profiling and so on. The function of the external-trigger imaging is mainly described in this paper, which was verified in combination of the THz imager with the pulsed THz free electron laser (THz-FEL) developed by Osaka University. The THz-FEL emits THz radiation in a wavelength range of 25 - 150 μm at repetition rates of 2.5, 3.3, 5.0 and 10 pulses per second. The external trigger pulse for the THz imager was generated with a pulse generator, using brightening pulse for THz-FEL. A series of pulses emitted by the THz-FEL at 86 μm were introduced to the THz imager and Joule meter via beam splitter, so that the output signal of THz imager was normalized with the output of the Joule meter and the stability of the THz radiation from FEL was also monitored. The normalized output signals of THz imager (digits/μJ) obtained at the repetition rates mentioned above were found consistent with one another. The timing-relation of the external trigger pulse to the brightening pulse was varied and the influence of the timing-relation on beam pattern is presented. These experimental results verify that the external trigger imaging function operates correctly.

  15. Imaging in anatomy: a comparison of imaging techniques in embalmed human cadavers

    PubMed Central

    2013-01-01

    Background A large variety of imaging techniques is an integral part of modern medicine. Introducing radiological imaging techniques into the dissection course serves as a basis for improved learning of anatomy and multidisciplinary learning in pre-clinical medical education. Methods Four different imaging techniques (ultrasound, radiography, computed tomography, and magnetic resonance imaging) were performed in embalmed human body donors to analyse possibilities and limitations of the respective techniques in this peculiar setting. Results The quality of ultrasound and radiography images was poor, images of computed tomography and magnetic resonance imaging were of good quality. Conclusion Computed tomography and magnetic resonance imaging have a superior image quality in comparison to ultrasound and radiography and offer suitable methods for imaging embalmed human cadavers as a valuable addition to the dissection course. PMID:24156510

  16. Advanced enhancement techniques for digitized images

    NASA Astrophysics Data System (ADS)

    Tom, V. T.; Merenyi, R. C.; Carlotto, M. J.; Heller, W. G.

    Computer image enhancement of digitized X-ray and conventional photographs has been employed to reveal anomalies in aerospace hardware. Signal processing of these images included use of specially-developed filters to sharpen detail without sacrificing radiographic information, application of local contrast stretch and histogram equalization algorithms to display structure in low-contrast areas and employment of other unique digital processing methods. Edge detection, normally complicated by poor spatial resolution, limited contrast and recording media noise, was performed as a post-processing operation via a difference-of-Gaussians method and a least squares fitting procedures. In this manner, multi-image signal processing allowed for the precise measurement (to within 0.02 inches, rms) of the Inertial Upper Stage nozzle nosecap motion during a static test firing as well as identifying potential problems in the Solid Rocket Booster parachute deployment.

  17. New imaging techniques and opportunities in endoscopy.

    PubMed

    Kiesslich, Ralf; Goetz, Martin; Hoffman, Arthur; Galle, Peter Robert

    2011-09-06

    Gastrointestinal endoscopy is undergoing major improvements, which are driven by new available technologies and substantial refinements of optical features. In this Review, we summarize available and evolving imaging technologies that could influence the clinical algorithm of endoscopic diagnosis. Detection, characterization and confirmation are essential steps required for proper endoscopic diagnosis. Optical and nonoptical methods can help to improve each step; these improvements are likely to increase the detection rate of neoplasias and reduce unnecessary endoscopic treatments. Furthermore, functional and molecular imaging are emerging as new diagnostic tools that could provide an opportunity for personalized medicine, in which endoscopy will define disease outcome or predict the response to targeted therapy.

  18. Bistatic imaging lidar technique for upper atmospheric studies.

    PubMed

    Welsh, B M; Gardner, C S

    1989-01-01

    The bistatic imaging lidar technique is fundamentally different from traditional monostatic lidar techniques. The vertical density of an atmospheric layer, such as the mesospheric sodium layer, is measured by imaging an illuminated spot within the layer. The spot is illuminated with a laser and imaged with a telescope in a bistatic configuration. Profiles through the image contain information about the vertical structure of the layer as well as the laser beam cross section. These profiles can be interpreted as the output of a linear filter having the density profile of the layer as input and an impulse response which is related to the laser beam cross section and imaging geometry. The theoretical vertical resolution can be quantified in terms of laser beamwidth and separation distance between the laser and telescope. Theoretical analysis of the technique and experimental data verifying the feasibility and basic performance of the technique are presented. PMID:20548430

  19. Development of neutron tomography and phase contrast imaging technique

    SciTech Connect

    Kashyap, Y. S.; Agrawal, Ashish; Sarkar, P. S.; Shukla, Mayank; Sinha, Amar

    2013-02-05

    This paper presents design and development of a state of art neutron imaging technique at CIRUS reactor with special reference for techniques adopted for tomography and phase contrast imaging applications. Different components of the beamline such as collimator, shielding, sample manipulator, digital imaging system were designed keeping in mind the requirements of data acquisition time and resolution. The collimator was designed in such a way that conventional and phase contrast imaging can be done using same collimator housing. We have done characterization of fuel pins, study of hydride blisters in pressure tubes hydrogen based cells, two phase flow visualization, and online study of locomotive parts etc. using neutron tomography and radiography technique. We have also done some studies using neutron phase contrast imaging technique on this beamline.

  20. Neurovascular coupling: in vivo optical techniques for functional brain imaging

    PubMed Central

    2013-01-01

    Optical imaging techniques reflect different biochemical processes in the brain, which is closely related with neural activity. Scientists and clinicians employ a variety of optical imaging technologies to visualize and study the relationship between neurons, glial cells and blood vessels. In this paper, we present an overview of the current optical approaches used for the in vivo imaging of neurovascular coupling events in small animal models. These techniques include 2-photon microscopy, laser speckle contrast imaging (LSCI), voltage-sensitive dye imaging (VSDi), functional photoacoustic microscopy (fPAM), functional near-infrared spectroscopy imaging (fNIRS) and multimodal imaging techniques. The basic principles of each technique are described in detail, followed by examples of current applications from cutting-edge studies of cerebral neurovascular coupling functions and metabolic. Moreover, we provide a glimpse of the possible ways in which these techniques might be translated to human studies for clinical investigations of pathophysiology and disease. In vivo optical imaging techniques continue to expand and evolve, allowing us to discover fundamental basis of neurovascular coupling roles in cerebral physiology and pathophysiology. PMID:23631798

  1. Neurovascular coupling: in vivo optical techniques for functional brain imaging.

    PubMed

    Liao, Lun-De; Tsytsarev, Vassiliy; Delgado-Martínez, Ignacio; Li, Meng-Lin; Erzurumlu, Reha; Vipin, Ashwati; Orellana, Josue; Lin, Yan-Ren; Lai, Hsin-Yi; Chen, You-Yin; Thakor, Nitish V

    2013-04-30

    Optical imaging techniques reflect different biochemical processes in the brain, which is closely related with neural activity. Scientists and clinicians employ a variety of optical imaging technologies to visualize and study the relationship between neurons, glial cells and blood vessels. In this paper, we present an overview of the current optical approaches used for the in vivo imaging of neurovascular coupling events in small animal models. These techniques include 2-photon microscopy, laser speckle contrast imaging (LSCI), voltage-sensitive dye imaging (VSDi), functional photoacoustic microscopy (fPAM), functional near-infrared spectroscopy imaging (fNIRS) and multimodal imaging techniques. The basic principles of each technique are described in detail, followed by examples of current applications from cutting-edge studies of cerebral neurovascular coupling functions and metabolic. Moreover, we provide a glimpse of the possible ways in which these techniques might be translated to human studies for clinical investigations of pathophysiology and disease. In vivo optical imaging techniques continue to expand and evolve, allowing us to discover fundamental basis of neurovascular coupling roles in cerebral physiology and pathophysiology.

  2. Diffusion weighted imaging: Technique and applications

    PubMed Central

    Baliyan, Vinit; Das, Chandan J; Sharma, Raju; Gupta, Arun Kumar

    2016-01-01

    Diffusion weighted imaging (DWI) is a method of signal contrast generation based on the differences in Brownian motion. DWI is a method to evaluate the molecular function and micro-architecture of the human body. DWI signal contrast can be quantified by apparent diffusion coefficient maps and it acts as a tool for treatment response evaluation and assessment of disease progression. Ability to detect and quantify the anisotropy of diffusion leads to a new paradigm called diffusion tensor imaging (DTI). DTI is a tool for assessment of the organs with highly organised fibre structure. DWI forms an integral part of modern state-of-art magnetic resonance imaging and is indispensable in neuroimaging and oncology. DWI is a field that has been undergoing rapid technical evolution and its applications are increasing every day. This review article provides insights in to the evolution of DWI as a new imaging paradigm and provides a summary of current role of DWI in various disease processes. PMID:27721941

  3. Combining Membrane Potential Imaging with Other Optical Techniques.

    PubMed

    Jaafari, Nadia; Vogt, Kaspar E; Saggau, Peter; Leslie, Loew M; Zecevic, Dejan; Canepari, Marco

    2015-01-01

    Membrane potential imaging using voltage-sensitive dyes can be combined with other optical techniques for a variety of applications. Combining voltage imaging with Ca2+ imaging allows correlating membrane potential changes with intracellular Ca2+ signals or with Ca2+ currents. Combining voltage imaging with uncaging techniques allows analyzing electrical signals elicited by photorelease of a particular molecule. This approach is also a useful tool to calibrate the change in fluorescence intensity in terms of membrane potential changes from different sites permitting spatial mapping of electrical activity. Finally, combining voltage imaging with optogenetics, in particular with channelrhodopsin stimulation, opens the gate to novel investigations of brain circuitries by allowing measurements of synaptic signals mediated by specific sets of neurons. Here we describe in detail the methods of membrane potential imaging in combination with other optical techniques and discus some important applications.

  4. Towards Automatic Image Segmentation Using Optimised Region Growing Technique

    NASA Astrophysics Data System (ADS)

    Alazab, Mamoun; Islam, Mofakharul; Venkatraman, Sitalakshmi

    Image analysis is being adopted extensively in many applications such as digital forensics, medical treatment, industrial inspection, etc. primarily for diagnostic purposes. Hence, there is a growing interest among researches in developing new segmentation techniques to aid the diagnosis process. Manual segmentation of images is labour intensive, extremely time consuming and prone to human errors and hence an automated real-time technique is warranted in such applications. There is no universally applicable automated segmentation technique that will work for all images as the image segmentation is quite complex and unique depending upon the domain application. Hence, to fill the gap, this paper presents an efficient segmentation algorithm that can segment a digital image of interest into a more meaningful arrangement of regions and objects. Our algorithm combines region growing approach with optimised elimination of false boundaries to arrive at more meaningful segments automatically. We demonstrate this using X-ray teeth images that were taken for real-life dental diagnosis.

  5. Recovering depth from focus using iterative image estimation techniques

    SciTech Connect

    Vitria, J.; Llacer, J.

    1993-09-01

    In this report we examine the possibility of using linear and nonlinear image estimation techniques to build a depth map of a three dimensional scene from a sequence of partially focused images. In particular, the techniques proposed to solve the problem of construction of a depth map are: (1) linear methods based on regularization procedures and (2) nonlinear methods based on statistical modeling. In the first case, we have implemented a matrix-oriented method to recover the point spread function (PSF) of a sequence of partially defocused images. In the second case, the chosen method has been a procedure based on image estimation by means of the EM algorithm, a well known technique in image reconstruction in medical applications. This method has been generalized to deal with optically defocused image sequences.

  6. Reticle defect sizing of optical proximity correction defects using SEM imaging and image analysis techniques

    NASA Astrophysics Data System (ADS)

    Zurbrick, Larry S.; Wang, Lantian; Konicek, Paul; Laird, Ellen R.

    2000-07-01

    Sizing of programmed defects on optical proximity correction (OPC) feature sis addressed using high resolution scanning electron microscope (SEM) images and image analysis techniques. A comparison and analysis of different sizing methods is made. This paper addresses the issues of OPC defect definition and discusses the experimental measurement results obtained by SEM in combination with image analysis techniques.

  7. High-Resolution and Animal Imaging Instrumentation and Techniques

    NASA Astrophysics Data System (ADS)

    Belcari, Nicola; Guerra, AlbertoDel

    During the last decade we have observed a growing interest in "in vivo" imaging techniques for small animals. This is due to the necessity of studying biochemical processes at a molecular level for pharmacology, genetic, and pathology investigations. This field of research is usually called "molecular imaging."Advances in biological understanding have been accompanied by technological advances in instrumentation and techniques and image-reconstruction software, resulting in improved image quality, visibility, and interpretation. The main technological challenge is then the design of systems with high spatial resolution and high sensitivity.

  8. The application of image enhancement techniques to remote manipulator operation

    NASA Technical Reports Server (NTRS)

    Gonzalez, R. C.

    1974-01-01

    Methods of image enhancement which can be used by an operator who is not experienced with the mechanisms of enhancement to obtain satisfactory results were designed and implemented. Investigation of transformations which operate directly on the image domain resulted in a new technique of contrast enhancement. Transformations on the Fourier transform of the original image, including such techniques as homomorphic filtering, were also investigated. The methods of communication between the enhancement system and the computer operator were analyzed, and a language was developed for use in image enhancement. A working enhancement system was then created, and is included.

  9. Automated thermal mapping techniques using chromatic image analysis

    NASA Technical Reports Server (NTRS)

    Buck, Gregory M.

    1989-01-01

    Thermal imaging techniques are introduced using a chromatic image analysis system and temperature sensitive coatings. These techniques are used for thermal mapping and surface heat transfer measurements on aerothermodynamic test models in hypersonic wind tunnels. Measurements are made on complex vehicle configurations in a timely manner and at minimal expense. The image analysis system uses separate wavelength filtered images to analyze surface spectral intensity data. The system was initially developed for quantitative surface temperature mapping using two-color thermographic phosphors but was found useful in interpreting phase change paint and liquid crystal data as well.

  10. Reconstruction Techniques for Sparse Multistatic Linear Array Microwave Imaging

    SciTech Connect

    Sheen, David M.; Hall, Thomas E.

    2014-06-09

    Sequentially-switched linear arrays are an enabling technology for a number of near-field microwave imaging applications. Electronically sequencing along the array axis followed by mechanical scanning along an orthogonal axis allows dense sampling of a two-dimensional aperture in near real-time. In this paper, a sparse multi-static array technique will be described along with associated Fourier-Transform-based and back-projection-based image reconstruction algorithms. Simulated and measured imaging results are presented that show the effectiveness of the sparse array technique along with the merits and weaknesses of each image reconstruction approach.

  11. Multiple Myeloma: A Review of Imaging Features and Radiological Techniques

    PubMed Central

    Healy, C. F.; Murray, J. G.; Eustace, S. J.; Madewell, J.; O'Gorman, P. J.; O'Sullivan, P.

    2011-01-01

    The recently updated Durie/Salmon PLUS staging system published in 2006 highlights the many advances that have been made in the imaging of multiple myeloma, a common malignancy of plasma cells. In this article, we shall focus primarily on the more sensitive and specific whole-body imaging techniques, including whole-body computed tomography, whole-body magnetic resonance imaging, and positron emission computed tomography. We shall also discuss new and emerging imaging techniques and future developments in the radiological assessment of multiple myeloma. PMID:22046568

  12. Multiple myeloma: a review of imaging features and radiological techniques.

    PubMed

    Healy, C F; Murray, J G; Eustace, S J; Madewell, J; O'Gorman, P J; O'Sullivan, P

    2011-01-01

    The recently updated Durie/Salmon PLUS staging system published in 2006 highlights the many advances that have been made in the imaging of multiple myeloma, a common malignancy of plasma cells. In this article, we shall focus primarily on the more sensitive and specific whole-body imaging techniques, including whole-body computed tomography, whole-body magnetic resonance imaging, and positron emission computed tomography. We shall also discuss new and emerging imaging techniques and future developments in the radiological assessment of multiple myeloma.

  13. An overview of imaging techniques for liver metastases management.

    PubMed

    Matos, António P; Altun, Ersan; Ramalho, Miguel; Velloni, Fernanda; AlObaidy, Mamdoh; Semelka, Richard C

    2015-01-01

    Evaluation of liver metastases is one of the most common indications for liver imaging. Imaging plays a key role in the of assessment liver metastases. A variety of imaging techniques, including ultrasonography, computed tomography, MRI and PET combined with CT scan are available for diagnosis, planning treatment, and follow-up treatment response. In this paper, the authors present the role of imaging for the assessment of liver metastases and the contribution of each of the different imaging techniques for their evaluation and management. Following recent developments in the field of oncology, the authors also present the importance of imaging for the assessment of liver metastases response to therapy. Finally, future perspectives on imaging of liver metastases are presented. PMID:26414180

  14. Automated synthesis of image processing procedures using AI planning techniques

    NASA Technical Reports Server (NTRS)

    Chien, Steve; Mortensen, Helen

    1994-01-01

    This paper describes the Multimission VICAR (Video Image Communication and Retrieval) Planner (MVP) (Chien 1994) system, which uses artificial intelligence planning techniques (Iwasaki & Friedland, 1985, Pemberthy & Weld, 1992, Stefik, 1981) to automatically construct executable complex image processing procedures (using models of the smaller constituent image processing subprograms) in response to image processing requests made to the JPL Multimission Image Processing Laboratory (MIPL). The MVP system allows the user to specify the image processing requirements in terms of the various types of correction required. Given this information, MVP derives unspecified required processing steps and determines appropriate image processing programs and parameters to achieve the specified image processing goals. This information is output as an executable image processing program which can then be executed to fill the processing request.

  15. Molecular-level insights of early-stage prion protein aggregation on mica and gold surface determined by AFM imaging and molecular simulation.

    PubMed

    Lou, Zhichao; Wang, Bin; Guo, Cunlan; Wang, Kun; Zhang, Haiqian; Xu, Bingqian

    2015-11-01

    By in situ time-lapse AFM, we investigated early-stage aggregates of PrP formed at low concentration (100 ng/mL) on mica and Au(111) surfaces in acetate buffer (pH 4.5). Remarkably different PrP assemblies were observed. Oligomeric structures of PrP aggregates were observed on mica surface, which was in sharp contrast to the multi-layer PrP aggregates yielding parallel linear patterns observed Au(111) surface. Combining molecular dynamics and docking simulations, PrP monomers, dimers and trimers were revealed as the basic units of the observed aggregates. Besides, the mechanisms of the observed PrP aggregations and the corresponding molecular-substrate and intermolecular interactions were suggested. These interactions involved gold-sulfur interaction, electrostatic interaction, hydrophobic interaction, and hydrogen binding interaction. In contrast, the PrP aggregates observed in pH 7.2 PBS buffer demonstrated similar large ball-like structures on both mica and Au(111) surfaces. The results indicate that the pH of a solution and the surface of the system can have strong effects on supramolecular assemblies of prion proteins. This study provides in-depth understanding on the structural and mechanistic nature of PrP aggregation, and can be used to study the aggregation mechanisms of other proteins with similar misfolding properties.

  16. Robust image modeling technique with a bioluminescence image segmentation application

    NASA Astrophysics Data System (ADS)

    Zhong, Jianghong; Wang, Ruiping; Tian, Jie

    2009-02-01

    A robust pattern classifier algorithm for the variable symmetric plane model, where the driving noise is a mixture of a Gaussian and an outlier process, is developed. The veracity and high-speed performance of the pattern recognition algorithm is proved. Bioluminescence tomography (BLT) has recently gained wide acceptance in the field of in vivo small animal molecular imaging. So that it is very important for BLT to how to acquire the highprecision region of interest in a bioluminescence image (BLI) in order to decrease loss of the customers because of inaccuracy in quantitative analysis. An algorithm in the mode is developed to improve operation speed, which estimates parameters and original image intensity simultaneously from the noise corrupted image derived from the BLT optical hardware system. The focus pixel value is obtained from the symmetric plane according to a more realistic assumption for the noise sequence in the restored image. The size of neighborhood is adaptive and small. What's more, the classifier function is base on the statistic features. If the qualifications for the classifier are satisfied, the focus pixel intensity is setup as the largest value in the neighborhood.Otherwise, it will be zeros.Finally,pseudo-color is added up to the result of the bioluminescence segmented image. The whole process has been implemented in our 2D BLT optical system platform and the model is proved.

  17. "Relative CIR": an image enhancement and visualization technique

    USGS Publications Warehouse

    Fleming, Michael D.

    1993-01-01

    Many techniques exist to spectrally and spatially enhance digital multispectral scanner data. One technique enhances an image while keeping the colors as they would appear in a color-infrared (CIR) image. This "relative CIR" technique generates an image that is both spectrally and spatially enhanced, while displaying a maximum range of colors. The technique enables an interpreter to visualize either spectral or land cover classes by their relative CIR characteristics. A relative CIR image is generated by developed spectral statistics for each class in the classifications and then, using a nonparametric approach for spectral enhancement, the means of the classes for each band are ranked. A 3 by 3 pixel smoothing filter is applied to the classification for spatial enhancement and the classes are mapped to the representative rank for each band. Practical applications of the technique include displaying an image classification product as a CIR image that was not derived directly from a spectral image, visualizing how a land cover classification would look as a CIR image, and displaying a spectral classification or intermediate product that will be used to label spectral classes.

  18. New spectral imaging techniques for blood oximetry in the retina

    NASA Astrophysics Data System (ADS)

    Alabboud, Ied; Muyo, Gonzalo; Gorman, Alistair; Mordant, David; McNaught, Andrew; Petres, Clement; Petillot, Yvan R.; Harvey, Andrew R.

    2007-07-01

    Hyperspectral imaging of the retina presents a unique opportunity for direct and quantitative mapping of retinal biochemistry - particularly of the vasculature where blood oximetry is enabled by the strong variation of absorption spectra with oxygenation. This is particularly pertinent both to research and to clinical investigation and diagnosis of retinal diseases such as diabetes, glaucoma and age-related macular degeneration. The optimal exploitation of hyperspectral imaging however, presents a set of challenging problems, including; the poorly characterised and controlled optical environment of structures within the retina to be imaged; the erratic motion of the eye ball; and the compounding effects of the optical sensitivity of the retina and the low numerical aperture of the eye. We have developed two spectral imaging techniques to address these issues. We describe first a system in which a liquid crystal tuneable filter is integrated into the illumination system of a conventional fundus camera to enable time-sequential, random access recording of narrow-band spectral images. Image processing techniques are described to eradicate the artefacts that may be introduced by time-sequential imaging. In addition we describe a unique snapshot spectral imaging technique dubbed IRIS that employs polarising interferometry and Wollaston prism beam splitters to simultaneously replicate and spectrally filter images of the retina into multiple spectral bands onto a single detector array. Results of early clinical trials acquired with these two techniques together with a physical model which enables oximetry map are reported.

  19. Visualization of sound generation: special imaging techniques

    NASA Astrophysics Data System (ADS)

    Hahlweg, Cornelius F.; Skaloud, Daniel C.; Gutzmann, Holger L.; Kutz, Sascha; Rothe, Hendrik

    2013-09-01

    The present paper is dedicated to the Optics and Music session of the Novel Systems Design and Optimization XVI Conference. It is intended as an informative paper for the music enthusiasts. Included are some examples of visualization of sound generation and vibration modes of musically relevant objects and processes - record playback, an electric guitar and a wine glass - using high speed video, borescopic view and cross polarization techniques.

  20. Technique development for photoacoustic imaging guided interventions

    NASA Astrophysics Data System (ADS)

    Cheng, Qian; Zhang, Haonan; Yuan, Jie; Feng, Ting; Xu, Guan; Wang, Xueding

    2015-03-01

    Laser-induced thermotherapy (LITT), i.e. tissue destruction induced by a local increase of temperature by means of laser light energy transmission, has been frequently used for minimally invasive treatments of various diseases such as benign thyroid nodules and liver cancer. The emerging photoacoustic (PA) imaging, when integrated with ultrasound (US), could contribute to LITT procedure. PA can enable a good visualization of percutaneous apparatus deep inside tissue and, therefore, can offer accurate guidance of the optical fibers to the target tissue. Our initial experiment demonstrated that, by picking the strong photoacoustic signals generated at the tips of optical fibers as a needle, the trajectory and position of the fibers could be visualized clearly using a commercial available US unit. When working the conventional US Bscan mode, the fibers disappeared when the angle between the fibers and the probe surface was larger than 60 degree; while working on the new PA mode, the fibers could be visualized without any problem even when the angle between the fibers and the probe surface was larger than 75 degree. Moreover, with PA imaging function integrated, the optical fibers positioned into the target tissue, besides delivering optical energy for thermotherapy, can also be used to generate PA signals for on-line evaluation of LITT. Powered by our recently developed PA physio-chemical analysis, PA measurements from the tissue can provide a direct and accurate feedback of the tissue responses to laser ablation, including the changes in not only chemical compositions but also histological microstructures. The initial experiment on the rat liver model has demonstrated the excellent sensitivity of PA imaging to the changes in tissue temperature rise and tissue status (from native to coagulated) when the tissue is treated in vivo with LITT.

  1. Reversible data embedding into images using wavelet techniques and sorting.

    PubMed

    Kamstra, Lute; Heijmans, Henk J A M

    2005-12-01

    The proliferation of digital information in our society has enticed a lot of research into data-embedding techniques that add information to digital content, like images, audio, and video. In this paper, we investigate high-capacity lossless data-embedding methods that allow one to embed large amounts of data into digital images (or video) in such a way that the original image can be reconstructed from the watermarked image. We present two new techniques: one based on least significant bit prediction and Sweldens' lifting scheme and another that is an improvement of Tian's technique of difference expansion. The new techniques are then compared with various existing embedding methods by looking at capacity-distortion behavior and capacity control. PMID:16370461

  2. Novel Magnetic Resonance Imaging Techniques in Brain Tumors.

    PubMed

    Nechifor, Ruben E; Harris, Robert J; Ellingson, Benjamin M

    2015-06-01

    Magnetic resonance imaging is a powerful, noninvasive imaging technique with exquisite sensitivity to soft tissue composition. Magnetic resonance imaging is primary tool for brain tumor diagnosis, evaluation of drug response assessment, and clinical monitoring of the patient during the course of their disease. The flexibility of magnetic resonance imaging pulse sequence design allows for a variety of image contrasts to be acquired, including information about magnetic resonance-specific tissue characteristics, molecular dynamics, microstructural organization, vascular composition, and biochemical status. The current review highlights recent advancements and novel approaches in MR characterization of brain tumors.

  3. Structure and Permeability of Ion-channels by Integrated AFM and Waveguide TIRF Microscopy

    PubMed Central

    Ramachandran, Srinivasan; Arce, Fernando Teran; Patel, Nirav R.; Quist, Arjan P.; Cohen, Daniel A.; Lal, Ratnesh

    2014-01-01

    Membrane ion channels regulate key cellular functions and their activity is dependent on their 3D structure. Atomic force microscopy (AFM) images 3D structure of membrane channels placed on a solid substrate. Solid substrate prevents molecular transport through ion channels thus hindering any direct structure-function relationship analysis. Here we designed a ~70 nm nanopore to suspend a membrane, allowing fluidic access to both sides. We used these nanopores with AFM and total internal reflection fluorescence microscopy (TIRFM) for high resolution imaging and molecular transport measurement. Significantly, membranes over the nanopore were stable for repeated AFM imaging. We studied structure-activity relationship of gap junction hemichannels reconstituted in lipid bilayers. Individual hemichannels in the membrane overlying the nanopore were resolved and transport of hemichannel-permeant LY dye was visualized when the hemichannel was opened by lowering calcium in the medium. This integrated technique will allow direct structure-permeability relationship of many ion channels and receptors. PMID:24651823

  4. A simultaneous photoacoustic tomography imaging technique in multilayer media

    NASA Astrophysics Data System (ADS)

    Chen, Xian; Tang, Zhilie; He, Yongheng; Liu, Haifeng

    2008-12-01

    This study aims to develop a simultaneous photoacoustic tomography imaging technique in multilayer media. With an acoustic lens which has the ability of parallel imaging instead of other PA image reconstruction methods on the basis of complex algorithms, obtaining a two-dimensional (2D) PA image in real-time is available. Combining the advantages of the acoustic lens which has long focal depth and the fast data acquisition system, the new system is particularly excellent that it can acquire the complete PA signals from all the object planes. With the time-resolved technique, the PA signals from different object planes can be distinguished. As a result, the multilayer PAT images can be reconstructed simultaneously without any complicated reconstruction algorithms. According to the experimental results, the reconstructed multilayer images agree well with the original samples.

  5. Locally tuned inverse sine nonlinear technique for color image enhancement

    NASA Astrophysics Data System (ADS)

    Arigela, Saibabu; Asari, Vijayan K.

    2013-02-01

    In this paper, a novel inverse sine nonlinear transformation based image enhancement technique is proposed to improve the visual quality of images captured in extreme lighting conditions. This method is adaptive, local and simple. The proposed technique consists of four main stages namely histogram adjustment, dynamic range compression, contrast enhancement and nonlinear color restoration. Histogram adjustment on each spectral band is performed to belittle the effect of illumination. Dynamic range compression is accomplished by an inverse sine nonlinear function with a locally tunable image dependent parameter based on the local statistics of each pixel's neighborhood regions of the luminance image. A nonlinear color restoration process based on the chromatic information and luminance of the original image is employed. A statistical quantitative evaluation is performed with the state of the art techniques to analyze and compare the performance of the proposed technique. The proposed technique is also tested on face detection in complex lighting conditions. The results of this technique on images captured in hazy/foggy weather environment are also presented. The evaluation results confirm that the proposed method can be applied to surveillance, security applications in complex lighting environments.

  6. Advanced millimeter-wave security portal imaging techniques

    NASA Astrophysics Data System (ADS)

    Sheen, David M.; Bernacki, Bruce E.; McMakin, Douglas L.

    2012-03-01

    Millimeter-wave (mm-wave) imaging is rapidly gaining acceptance as a security tool to augment conventional metal detectors and baggage x-ray systems for passenger screening at airports and other secured facilities. This acceptance indicates that the technology has matured; however, many potential improvements can yet be realized. The authors have developed a number of techniques over the last several years including novel image reconstruction and display techniques, polarimetric imaging techniques, array switching schemes, and high-frequency high-bandwidth techniques. All of these may improve the performance of new systems; however, some of these techniques will increase the cost and complexity of the mm-wave security portal imaging systems. Reducing this cost may require the development of novel array designs. In particular, RF photonic methods may provide new solutions to the design and development of the sequentially switched linear mm-wave arrays that are the key element in the mm-wave portal imaging systems. Highfrequency, high-bandwidth designs are difficult to achieve with conventional mm-wave electronic devices, and RF photonic devices may be a practical alternative. In this paper, the mm-wave imaging techniques developed at PNNL are reviewed and the potential for implementing RF photonic mm-wave array designs is explored.

  7. Reconstruction techniques for sparse multistatic linear array microwave imaging

    NASA Astrophysics Data System (ADS)

    Sheen, David M.; Hall, Thomas E.

    2014-06-01

    Sequentially-switched linear arrays are an enabling technology for a number of near-field microwave imaging applications. Electronically sequencing along the array axis followed by mechanical scanning along an orthogonal axis allows dense sampling of a two-dimensional aperture in near real-time. The Pacific Northwest National Laboratory (PNNL) has developed this technology for several applications including concealed weapon detection, groundpenetrating radar, and non-destructive inspection and evaluation. These techniques form three-dimensional images by scanning a diverging beam swept frequency transceiver over a two-dimensional aperture and mathematically focusing or reconstructing the data into three-dimensional images. Recently, a sparse multi-static array technology has been developed that reduces the number of antennas required to densely sample the linear array axis of the spatial aperture. This allows a significant reduction in cost and complexity of the linear-array-based imaging system. The sparse array has been specifically designed to be compatible with Fourier-Transform-based image reconstruction techniques; however, there are limitations to the use of these techniques, especially for extreme near-field operation. In the extreme near-field of the array, back-projection techniques have been developed that account for the exact location of each transmitter and receiver in the linear array and the 3-D image location. In this paper, the sparse array technique will be described along with associated Fourier-Transform-based and back-projection-based image reconstruction algorithms. Simulated imaging results are presented that show the effectiveness of the sparse array technique along with the merits and weaknesses of each image reconstruction approach.

  8. Using image processing techniques on proximity probe signals in rotordynamics

    NASA Astrophysics Data System (ADS)

    Diamond, Dawie; Heyns, Stephan; Oberholster, Abrie

    2016-06-01

    This paper proposes a new approach to process proximity probe signals in rotordynamic applications. It is argued that the signal be interpreted as a one dimensional image. Existing image processing techniques can then be used to gain information about the object being measured. Some results from one application is presented. Rotor blade tip deflections can be calculated through localizing phase information in this one dimensional image. It is experimentally shown that the newly proposed method performs more accurately than standard techniques, especially where the sampling rate of the data acquisition system is inadequate by conventional standards.

  9. Peplography: an image restoration technique through scattering media

    NASA Astrophysics Data System (ADS)

    Cho, Myungjin; Cho, Ki-Ok; Kim, Youngjun

    2016-06-01

    In this paper, we propose an image restoration technique through scattering media. Under natural light an imaging through scattering media is a big challenge in many applications. To overcome this challenge, many methods have been reported such as non-invasive imaging, ghost imaging, and wavefront shaping. However, their results have not been sufficient for observers. In this paper, we estimate the scattering media by statistical estimation such as maximum likelihood estimation. By removing this estimated scattering media from the original image, we can obtain the image with only ballistic photons. Then, the ballistic photons can be detected by photon counting imaging concept. In addition, since each basic color channel has its own wavelength, color photon counting process can be implemented. To enhance the visual quality of the result image, a passive three-dimensional (3D) imaging technique such as integral imaging is used. To prove our method and show the better performance, we carried out optical experiments and calculate mean square error (MSE).

  10. Nondestructive evaluation technique using infrared thermography and terahertz imaging

    NASA Astrophysics Data System (ADS)

    Sakagami, Takahide; Shiozawa, Daiki; Tamaki, Yoshitaka; Iwama, Tatsuya

    2016-05-01

    Nondestructive testing (NDT) techniques using pulse heating infrared thermography and terahertz (THz) imaging were developed for detecting deterioration of oil tank floor, such as blister and delamination of corrosion protection coating, or corrosion of the bottom steel plate under coating. Experimental studies were conducted to demonstrate the practicability of developed techniques. It was found that the pulse heating infrared thermography was utilized for effective screening inspection and THz-TDS imaging technique performed well for the detailed inspection of coating deterioration and steel corrosion.

  11. Comparison of three imaging techniques for assessing endodontic working length.

    PubMed

    Griffiths, B M; Brown, J E; Hyatt, A T; Linney, A D

    1992-11-01

    The accuracy of endodontic working length estimation was investigated using three imaging techniques: radiography (Rd), Xeroradiography (Xr) and Radiovisiography (RVG positive and negative prints). An in-vitro model of extracted single straight roots, mounted in wooden blocks with wax, was employed in the study. Optimum exposures were established for each of the imaging techniques. The magnification of the images was measured and the resolution of the RVG images was also investigated. Comparable Rd (D-speed film), Xr,RVG positive and RVG negative images were made of five roots with size 10 files in situ. Images of 10 standard files were made, ranging from 2.0 mm through the root apex to 2.5 mm short of the apex, resulting in 200 images. Six observers each assessed the working distance on 100 images, measuring the distance from the apical foramen to the file tip. After allowing for the magnification of the images, these results were compared with the 'true' file tip to apical foramen (measured with the aid of a reflex microscope). The inaccuracy of working distance estimations was considered to be of clinical significance (> 0.5 mm) in 6% of measurements made from Rd and Xr, 19.2% of measurements from RVG negative and 32.3% from RVG positive images. In addition, 14% of RVG images were too poorly defined to be assessed. The first-generation RVG system was used in this study. It was therefore concluded that the most accurate estimates of working distance were made from Xr and Rd images, and that RVG images, particularly the RVG positive images, were the least accurate and most difficult to read.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:1306859

  12. An Image Morphing Technique Based on Optimal Mass Preserving Mapping

    PubMed Central

    Zhu, Lei; Yang, Yan; Haker, Steven; Tannenbaum, Allen

    2013-01-01

    Image morphing, or image interpolation in the time domain, deals with the metamorphosis of one image into another. In this paper, a new class of image morphing algorithms is proposed based on the theory of optimal mass transport. The L2 mass moving energy functional is modified by adding an intensity penalizing term, in order to reduce the undesired double exposure effect. It is an intensity-based approach and, thus, is parameter free. The optimal warping function is computed using an iterative gradient descent approach. This proposed morphing method is also extended to doubly connected domains using a harmonic parameterization technique, along with finite-element methods. PMID:17547128

  13. An image morphing technique based on optimal mass preserving mapping.

    PubMed

    Zhu, Lei; Yang, Yan; Haker, Steven; Tannenbaum, Allen

    2007-06-01

    Image morphing, or image interpolation in the time domain, deals with the metamorphosis of one image into another. In this paper, a new class of image morphing algorithms is proposed based on the theory of optimal mass transport. The L(2) mass moving energy functional is modified by adding an intensity penalizing term, in order to reduce the undesired double exposure effect. It is an intensity-based approach and, thus, is parameter free. The optimal warping function is computed using an iterative gradient descent approach. This proposed morphing method is also extended to doubly connected domains using a harmonic parameterization technique, along with finite-element methods. PMID:17547128

  14. Image defocusing in nature and technique in recognition process

    NASA Astrophysics Data System (ADS)

    Ginzburg, Vera M.

    1998-03-01

    Application of visual image defocusing is illustrated as a technique for generalization, recognition and control. Specifically, formation of generalized images of objects by using a set of elementary patterns is described. This 'geometric alphabet' is created by two basic figures: a stripe and round spot. It is known from physiology that these figures produce response in special cells of the visual cortex of living organisms. Boolean algebra (Venn's diagrams) is used to obtain 'letters' and generalized images ('geometrical words') by computer simulation. The results of physical and computer experiments are given. A diagram of an anthropomorphic robot is presented together with model experiments on 'drawing' generalized images.

  15. Imaging normal pressure hydrocephalus: theories, techniques, and challenges.

    PubMed

    Keong, Nicole C H; Pena, Alonso; Price, Stephen J; Czosnyka, Marek; Czosnyka, Zofia; Pickard, John D

    2016-09-01

    The pathophysiology of NPH continues to provoke debate. Although guidelines and best-practice recommendations are well established, there remains a lack of consensus about the role of individual imaging modalities in characterizing specific features of the condition and predicting the success of CSF shunting. Variability of clinical presentation and imperfect responsiveness to shunting are obstacles to the application of novel imaging techniques. Few studies have sought to interpret imaging findings in the context of theories of NPH pathogenesis. In this paper, the authors discuss the major streams of thought for the evolution of NPH and the relevance of key imaging studies contributing to the understanding of the pathophysiology of this complex condition.

  16. Structural impact of cations on lipid bilayer models: nanomechanical properties by AFM-force spectroscopy.

    PubMed

    Redondo-Morata, Lorena; Giannotti, Marina I; Sanz, Fausto

    2014-02-01

    Atomic Force Microscopy (AFM) has become an invaluable tool for studying the micro- and nanoworlds. As a stand-alone, high-resolution imaging technique and force transducer, it defies most other surface instrumentation in ease of use, sensitivity and versatility. The main strength of AFM relies on the possibility to operate in an aqueous environment on a wide variety of biological samples, from single molecules - DNA or proteins - to macromolecular assemblies like biological membranes. Understanding the effect of mechanical stress on membranes is of primary importance in biophysics, since cells are known to perform their function under a complex combination of forces. In the later years, AFM-based Force-Spectroscopy (AFM-FS) has provided a new vista on membrane mechanics in a confined area within the nanometer realm, where most of the specific molecular interactions take place. Lipid membranes are electrostatically charged entities that physiologically coexist with electrolyte solutions. Thus, specific interactions with ions are a matter of considerable interest. The distribution of ions in the solution and their interaction with the membranes are factors that substantially modify the structure and dynamics of the cell membranes. Furthermore, signaling processes are modified by the membrane capability of retaining ions. Supported Lipid Bilayers (SLBs) are a versatile tool to investigate phospholipid membranes mimicking biological surfaces. In the present contribution, we review selected experiments on the mechanical stability of SLBs as models of lipid membranes by means of AFM-FS, with special focus on the effect of cations and ionic strength in the overall nanomechanical stability. PMID:24341385

  17. [Novel endoscopic techniques to image the upper gastrointestinal tract].

    PubMed

    Quénéhervé, Lucille; Neunlist, Michel; Bruley des Varannes, Stanislas; Tearney, Guillermo; Coron, Emmanuel

    2015-01-01

    Novel endoscopic techniques for the analysis of the digestive wall have recently been developed to allow investigating digestive diseases beyond standard "white-light" macroscopic imaging of the mucosal surface. Among innovative techniques under clinical evaluation, confocal endomicroscopy and optical frequency domain imaging (OFDI) are the most promising. Indeed, these techniques allow performing in vivo microscopy with different levels in terms of depths and magnification, as well as functional assessment of structures. Some of these techniques, such as capsule-based OFDI, are also less invasive than traditional endoscopy and might help screening large groups of patients for specific disorders, for instance oesophageal precancerous diseases. In this review, we will focus on the results obtained with these techniques in precancerous, inflammatory and neuromuscular disorders.

  18. 3D thermography imaging standardization technique for inflammation diagnosis

    NASA Astrophysics Data System (ADS)

    Ju, Xiangyang; Nebel, Jean-Christophe; Siebert, J. Paul

    2005-01-01

    We develop a 3D thermography imaging standardization technique to allow quantitative data analysis. Medical Digital Infrared Thermal Imaging is very sensitive and reliable mean of graphically mapping and display skin surface temperature. It allows doctors to visualise in colour and quantify temperature changes in skin surface. The spectrum of colours indicates both hot and cold responses which may co-exist if the pain associate with an inflammatory focus excites an increase in sympathetic activity. However, due to thermograph provides only qualitative diagnosis information, it has not gained acceptance in the medical and veterinary communities as a necessary or effective tool in inflammation and tumor detection. Here, our technique is based on the combination of visual 3D imaging technique and thermal imaging technique, which maps the 2D thermography images on to 3D anatomical model. Then we rectify the 3D thermogram into a view independent thermogram and conform it a standard shape template. The combination of these imaging facilities allows the generation of combined 3D and thermal data from which thermal signatures can be quantified.

  19. AFM investigation of Martian soil simulants on micromachined Si substrates.

    PubMed

    Vijendran, S; Sykulska, H; Pike, W T

    2007-09-01

    The micro and nanostructures of Martian soil simulants with particles in the micrometre-size range have been studied using a combination of optical and atomic force microscopy (AFM) in preparation for the 2007 NASA Phoenix Mars Lander mission. The operation of an atomic force microscope on samples of micrometre-sized soil particles is a poorly investigated area where the unwanted interaction between the scanning tip and loose particles results in poor image quality and tip contamination by the sample. In order to mitigate these effects, etched silicon substrates with a variety of features have been used to facilitate the sorting and gripping of particles. From these experiments, a number of patterns were identified that were particularly good at isolating and immobilizing particles for AFM imaging. This data was used to guide the design of micromachined substrates for the Phoenix AFM. Both individual particles as well as aggregates were successfully imaged, and information on sizes, shapes and surface morphologies were obtained. This study highlights both the strengths and weaknesses of AFM for the potential in situ investigation of Martian soil and dust. Also presented are more general findings of the limiting operational constraints that exist when attempting the AFM of high aspect ratio particles with current technology. The performance of the final designs of the substrates incorporated on Phoenix will be described in a later paper. PMID:17760618

  20. Rock type discrimination techniques using Landsat and Seasat image data

    NASA Technical Reports Server (NTRS)

    Blom, R.; Abrams, M.; Conrad, C.

    1981-01-01

    Results of a sedimentary rock type discrimination project using Seasat radar and Landsat multispectral image data of the San Rafael Swell, in eastern Utah, are presented, which has the goal of determining the potential contribution of radar image data to Landsat image data for rock type discrimination, particularly when the images are coregistered. The procedure employs several images processing techniques using the Landsat and Seasat data independently, and then both data sets are coregistered. The images are evaluated according to the ease with which contacts can be located and rock units (not just stratigraphically adjacent ones) separated. Results show that of the Landsat images evaluated, the image using a supervised classification scheme is the best for sedimentary rock type discrimination. Of less value, in decreasing order, are color ratio composites, principal components, and the standard color composite. In addition, for rock type discrimination, the black and white Seasat image is less useful than any of the Landsat color images by itself. However, it is found that the incorporation of the surface textural measures made from the Seasat image provides a considerable and worthwhile improvement in rock type discrimination.

  1. Cylindrical millimeter-wave imaging technique for concealed weapon detection

    NASA Astrophysics Data System (ADS)

    Sheen, David M.; McMakin, Douglas L.; Hall, Thomas E.

    1998-03-01

    A novel cylindrical millimeter-wave imaging technique has been developed at the Pacific Northwest National Laboratory for the detection of metallic and non-metallic concealed weapons. This technique uses a vertical array of millimeter- wave antennas which is mechanically swept around a person in a cylindrical fashion. The wideband millimeter-wave data is mathematically reconstructed into a series of high- resolution images of the person being screened. Clothing is relatively transparent to millimeter-wave illumination,whereas the human body and concealed items are reflective at millimeter wavelengths. Differences in shape and reflectivity are revealed in the images and allow a human operator to detect and identify concealed weapons. A full 360 degree scan is necessary to fully inspect a person for concealed items. The millimeter-wave images can be formed into a video animation sequence in which the person appears to rotate in front of a fixed illumination source.This is s convenient method for presenting the 3D image data for analysis. This work has been fully sponsored by the FAA. An engineering prototype based on the cylindrical imaging technique is presently under development. The FAA is currently opposed to presenting the image data directly to the operator due to personal privacy concerns. A computer automated system is desired to address this problem by eliminating operator viewing of the imagery.

  2. Point counting on the Macintosh. A semiautomated image analysis technique.

    PubMed

    Gatlin, C L; Schaberg, E S; Jordan, W H; Kuyatt, B L; Smith, W C

    1993-10-01

    In image analysis, point counting is used to estimate three-dimensional quantitative parameters from sets of measurements made on two-dimensional images. Point counting is normally conducted either by hand only or manually through a planimeter. We developed a semiautomated, Macintosh-based method of point counting. This technique could be useful for any point counting application in which the image can be digitized. We utilized this technique to demonstrate increased vacuolation in white matter tracts of rat brains, but it could be used on many other types of tissue. Volume fractions of vacuoles within the corpus callosum of rat brains were determined by analyzing images of histologic sections. A stereologic grid was constructed using the Claris MacDraw II software. The grid was modified for optimum line density and size in Adobe Photoshop, electronically superimposed onto the images and sampled using version 1.37 of NIH Image public domain software. This technique was further automated by the creation of a macro (small program) to create the grid, overlay the grid on a predetermined image, threshold the objects of interest and count thresholded objects at intersections of the grid lines. This method is expected to significantly reduce the amount of time required to conduct point counting and to improve the consistency of counts.

  3. Recent results in the development of fast neutron imaging techniques

    SciTech Connect

    Hall, J; Dietrich, F; Logan, C; Rusnak, B

    2000-09-11

    We are continuing with the development of fast ({approx} 12 MeV) neutron imaging techniques for use in NDE applications. Our goal is to develop a neutron imaging system capable of detecting sub-mm-scale cracks, cubic-mm-scale voids and other structural defects in heavily-shielded low-Z materials within thick sealed objects. The final system will be relatively compact (suitable for use in a small laboratory) and capable of acquiring both radiographic and full tomographic image sets. The design of a prototype imaging detector will be reviewed and results from several recent imaging experiments will be presented. The concurrent development of an intense, accelerator-driven neutron source suitable for use with the final production imaging system will also be discussed.

  4. Video multiple watermarking technique based on image interlacing using DWT.

    PubMed

    Ibrahim, Mohamed M; Abdel Kader, Neamat S; Zorkany, M

    2014-01-01

    Digital watermarking is one of the important techniques to secure digital media files in the domains of data authentication and copyright protection. In the nonblind watermarking systems, the need of the original host file in the watermark recovery operation makes an overhead over the system resources, doubles memory capacity, and doubles communications bandwidth. In this paper, a robust video multiple watermarking technique is proposed to solve this problem. This technique is based on image interlacing. In this technique, three-level discrete wavelet transform (DWT) is used as a watermark embedding/extracting domain, Arnold transform is used as a watermark encryption/decryption method, and different types of media (gray image, color image, and video) are used as watermarks. The robustness of this technique is tested by applying different types of attacks such as: geometric, noising, format-compression, and image-processing attacks. The simulation results show the effectiveness and good performance of the proposed technique in saving system resources, memory capacity, and communications bandwidth. PMID:25587570

  5. Video multiple watermarking technique based on image interlacing using DWT.

    PubMed

    Ibrahim, Mohamed M; Abdel Kader, Neamat S; Zorkany, M

    2014-01-01

    Digital watermarking is one of the important techniques to secure digital media files in the domains of data authentication and copyright protection. In the nonblind watermarking systems, the need of the original host file in the watermark recovery operation makes an overhead over the system resources, doubles memory capacity, and doubles communications bandwidth. In this paper, a robust video multiple watermarking technique is proposed to solve this problem. This technique is based on image interlacing. In this technique, three-level discrete wavelet transform (DWT) is used as a watermark embedding/extracting domain, Arnold transform is used as a watermark encryption/decryption method, and different types of media (gray image, color image, and video) are used as watermarks. The robustness of this technique is tested by applying different types of attacks such as: geometric, noising, format-compression, and image-processing attacks. The simulation results show the effectiveness and good performance of the proposed technique in saving system resources, memory capacity, and communications bandwidth.

  6. Video Multiple Watermarking Technique Based on Image Interlacing Using DWT

    PubMed Central

    Ibrahim, Mohamed M.; Abdel Kader, Neamat S.; Zorkany, M.

    2014-01-01

    Digital watermarking is one of the important techniques to secure digital media files in the domains of data authentication and copyright protection. In the nonblind watermarking systems, the need of the original host file in the watermark recovery operation makes an overhead over the system resources, doubles memory capacity, and doubles communications bandwidth. In this paper, a robust video multiple watermarking technique is proposed to solve this problem. This technique is based on image interlacing. In this technique, three-level discrete wavelet transform (DWT) is used as a watermark embedding/extracting domain, Arnold transform is used as a watermark encryption/decryption method, and different types of media (gray image, color image, and video) are used as watermarks. The robustness of this technique is tested by applying different types of attacks such as: geometric, noising, format-compression, and image-processing attacks. The simulation results show the effectiveness and good performance of the proposed technique in saving system resources, memory capacity, and communications bandwidth. PMID:25587570

  7. Improving face image extraction by using deep learning technique

    NASA Astrophysics Data System (ADS)

    Xue, Zhiyun; Antani, Sameer; Long, L. R.; Demner-Fushman, Dina; Thoma, George R.

    2016-03-01

    The National Library of Medicine (NLM) has made a collection of over a 1.2 million research articles containing 3.2 million figure images searchable using the Open-iSM multimodal (text+image) search engine. Many images are visible light photographs, some of which are images containing faces ("face images"). Some of these face images are acquired in unconstrained settings, while others are studio photos. To extract the face regions in the images, we first applied one of the most widely-used face detectors, a pre-trained Viola-Jones detector implemented in Matlab and OpenCV. The Viola-Jones detector was trained for unconstrained face image detection, but the results for the NLM database included many false positives, which resulted in a very low precision. To improve this performance, we applied a deep learning technique, which reduced the number of false positives and as a result, the detection precision was improved significantly. (For example, the classification accuracy for identifying whether the face regions output by this Viola- Jones detector are true positives or not in a test set is about 96%.) By combining these two techniques (Viola-Jones and deep learning) we were able to increase the system precision considerably, while avoiding the need to manually construct a large training set by manual delineation of the face regions.

  8. Imaging Techniques for Relativistic Beams: Issues and Limitations

    SciTech Connect

    Lumpkin, Alex H.; Wendt, Manfred; /Fermilab

    2012-02-01

    Characterizations of transverse profiles for low-power beams in the accelerators of the proposed linear colliders (ILC and CLIC) using imaging techniques are being evaluated. Assessments of the issues and limitations for imaging relativistic beams with intercepting scintillator or optical transition radiation screens are presented based on low-energy tests at the Fermilab A0 photoinjector and are planned for the Advanced Superconducting Test Accelerator at Fermilab. We have described several of the issues and limitations one encounters with the imaging of relativistic electron beams. We have reported our initial tests at the A0PI facility and our plans to extend these studies to the GeV scale at the ASTA facility. We also have plans to test these concepts with 23-GeV beams at the FACET facility at SLAC in the coming year. It appears the future remains bright for imaging techniques in ILC-relevant parameter space.

  9. A High Performance Image Data Compression Technique for Space Applications

    NASA Technical Reports Server (NTRS)

    Yeh, Pen-Shu; Venbrux, Jack

    2003-01-01

    A highly performing image data compression technique is currently being developed for space science applications under the requirement of high-speed and pushbroom scanning. The technique is also applicable to frame based imaging data. The algorithm combines a two-dimensional transform with a bitplane encoding; this results in an embedded bit string with exact desirable compression rate specified by the user. The compression scheme performs well on a suite of test images acquired from spacecraft instruments. It can also be applied to three-dimensional data cube resulting from hyper-spectral imaging instrument. Flight qualifiable hardware implementations are in development. The implementation is being designed to compress data in excess of 20 Msampledsec and support quantization from 2 to 16 bits. This paper presents the algorithm, its applications and status of development.

  10. Laser Illumination Modality of Photoacoustic Imaging Technique for Prostate Cancer

    NASA Astrophysics Data System (ADS)

    Peng, Dong-qing; Peng, Yuan-yuan; Guo, Jian; Li, Hui

    2016-02-01

    Photoacoustic imaging (PAI) has recently emerged as a promising imaging technique for prostate cancer. But there was still a lot of challenge in the PAI for prostate cancer detection, such as laser illumination modality. Knowledge of absorbed light distribution in prostate tissue was essential since the distribution characteristic of absorbed light energy would influence the imaging depth and range of PAI. In order to make a comparison of different laser illumination modality of photoacoustic imaging technique for prostate cancer, optical model of human prostate was established and combined with Monte Carlo simulation method to calculate the light absorption distribution in the prostate tissue. Characteristic of light absorption distribution of transurethral and trans-rectal illumination case, and of tumor at different location was compared with each other.The relevant conclusions would be significant for optimizing the light illumination in a PAI system for prostate cancer detection.

  11. High-speed spiral imaging technique for an atomic force microscope using a linear quadratic Gaussian controller

    SciTech Connect

    Habibullah, H. Pota, H. R. Petersen, I. R.

    2014-03-15

    This paper demonstrates a high-speed spiral imaging technique for an atomic force microscope (AFM). As an alternative to traditional raster scanning, an approach of gradient pulsing using a spiral line is implemented and spirals are generated by applying single-frequency cosine and sine waves of slowly varying amplitudes to the X and Y-axes of the AFM’s piezoelectric tube scanner (PTS). Due to these single-frequency sinusoidal input signals, the scanning process can be faster than that of conventional raster scanning. A linear quadratic Gaussian controller is designed to track the reference sinusoid and a vibration compensator is combined to damp the resonant mode of the PTS. An internal model of the reference sinusoidal signal is included in the plant model and an integrator for the system error is introduced in the proposed control scheme. As a result, the phase error between the input and output sinusoids from the X and Y-PTSs is reduced. The spirals produced have particularly narrow-band frequency measures which change slowly over time, thereby making it possible for the scanner to achieve improved tracking and continuous high-speed scanning rather than being restricted to the back and forth motion of raster scanning. As part of the post-processing of the experimental data, a fifth-order Butterworth filter is used to filter noises in the signals emanating from the position sensors and a Gaussian image filter is used to filter the images. A comparison of images scanned using the proposed controller (spiral) and the AFM PI controller (raster) shows improvement in the scanning rate using the proposed method.

  12. AFM CHARACTERIZATION OF RAMAN LASER INDUCED DAMAGE ON CDZNTECRYSTAL SURFACES

    SciTech Connect

    Teague, L.; Duff, M.

    2008-10-07

    High quality CdZnTe (or CZT) crystals have the potential for use in room temperature gamma-ray and X-ray spectrometers. Over the last decade, the methods for growing high quality CZT have improved the quality of the produced crystals however there are material features that can influence the performance of these materials as radiation detectors. The presence of structural heterogeneities within the crystals, such as twinning, pipes, grain boundaries (polycrystallinity), and secondary phases (SPs) can have an impact on the detector performance. There is considerable need for reliable and reproducible characterization methods for the measurement of crystal quality. With improvements in material characterization and synthesis, these crystals may become suitable for widespread use in gamma radiation detection. Characterization techniques currently utilized to test for quality and/or to predict performance of the crystal as a gamma-ray detector include infrared (IR) transmission imaging, synchrotron X-ray topography, photoluminescence spectroscopy, transmission electron microscopy (TEM), atomic force microscopy (AFM) and Raman spectroscopy. In some cases, damage caused by characterization methods can have deleterious effects on the crystal performance. The availability of non-destructive analysis techniques is essential to validate a crystal's quality and its ability to be used for either qualitative or quantitative gamma-ray or X-ray detection. The work presented herein discusses the damage that occurs during characterization of the CZT surface by a laser during Raman spectroscopy, even at minimal laser powers. Previous Raman studies have shown that the localized annealing from tightly focused, low powered lasers results in areas of higher Te concentration on the CZT surface. This type of laser damage on the surface resulted in decreased detector performance which was most likely due to increased leakage current caused by areas of higher Te concentration. In this study

  13. Optimization of phase contrast in bimodal amplitude modulation AFM.

    PubMed

    Damircheli, Mehrnoosh; Payam, Amir F; Garcia, Ricardo

    2015-01-01

    Bimodal force microscopy has expanded the capabilities of atomic force microscopy (AFM) by providing high spatial resolution images, compositional contrast and quantitative mapping of material properties without compromising the data acquisition speed. In the first bimodal AFM configuration, an amplitude feedback loop keeps constant the amplitude of the first mode while the observables of the second mode have not feedback restrictions (bimodal AM). Here we study the conditions to enhance the compositional contrast in bimodal AM while imaging heterogeneous materials. The contrast has a maximum by decreasing the amplitude of the second mode. We demonstrate that the roles of the excited modes are asymmetric. The operational range of bimodal AM is maximized when the second mode is free to follow changes in the force. We also study the contrast in trimodal AFM by analyzing the kinetic energy ratios. The phase contrast improves by decreasing the energy of second mode relative to those of the first and third modes.

  14. Optimization of phase contrast in bimodal amplitude modulation AFM

    PubMed Central

    Damircheli, Mehrnoosh; Payam, Amir F

    2015-01-01

    Summary Bimodal force microscopy has expanded the capabilities of atomic force microscopy (AFM) by providing high spatial resolution images, compositional contrast and quantitative mapping of material properties without compromising the data acquisition speed. In the first bimodal AFM configuration, an amplitude feedback loop keeps constant the amplitude of the first mode while the observables of the second mode have not feedback restrictions (bimodal AM). Here we study the conditions to enhance the compositional contrast in bimodal AM while imaging heterogeneous materials. The contrast has a maximum by decreasing the amplitude of the second mode. We demonstrate that the roles of the excited modes are asymmetric. The operational range of bimodal AM is maximized when the second mode is free to follow changes in the force. We also study the contrast in trimodal AFM by analyzing the kinetic energy ratios. The phase contrast improves by decreasing the energy of second mode relative to those of the first and third modes. PMID:26114079

  15. A novel data processing technique for image reconstruction of penumbral imaging

    NASA Astrophysics Data System (ADS)

    Xie, Hongwei; Li, Hongyun; Xu, Zeping; Song, Guzhou; Zhang, Faqiang; Zhou, Lin

    2011-06-01

    CT image reconstruction technique was applied to the data processing of the penumbral imaging. Compared with other traditional processing techniques for penumbral coded pinhole image such as Wiener, Lucy-Richardson and blind technique, this approach is brand new. In this method, the coded aperture processing method was used for the first time independent to the point spread function of the image diagnostic system. In this way, the technical obstacles was overcome in the traditional coded pinhole image processing caused by the uncertainty of point spread function of the image diagnostic system. Then based on the theoretical study, the simulation of penumbral imaging and image reconstruction was carried out to provide fairly good results. While in the visible light experiment, the point source of light was used to irradiate a 5mm×5mm object after diffuse scattering and volume scattering. The penumbral imaging was made with aperture size of ~20mm. Finally, the CT image reconstruction technique was used for image reconstruction to provide a fairly good reconstruction result.

  16. Fingerprint pattern restoration by digital image processing techniques.

    PubMed

    Wen, Che-Yen; Yu, Chiu-Chung

    2003-09-01

    Fingerprint evidence plays an important role in solving criminal problems. However, defective (lacking information needed for completeness) or contaminated (undesirable information included) fingerprint patterns make identifying and recognizing processes difficult. Unfortunately. this is the usual case. In the recognizing process (enhancement of patterns, or elimination of "false alarms" so that a fingerprint pattern can be searched in the Automated Fingerprint Identification System (AFIS)), chemical and physical techniques have been proposed to improve pattern legibility. In the identifying process, a fingerprint examiner can enhance contaminated (but not defective) fingerprint patterns under guidelines provided by the Scientific Working Group on Friction Ridge Analysis, Study and Technology (SWGFAST), the Scientific Working Group on Imaging Technology (SWGIT), and an AFIS working group within the National Institute of Justice. Recently, the image processing techniques have been successfully applied in forensic science. For example, we have applied image enhancement methods to improve the legibility of digital images such as fingerprints and vehicle plate numbers. In this paper, we propose a novel digital image restoration technique based on the AM (amplitude modulation)-FM (frequency modulation) reaction-diffusion method to restore defective or contaminated fingerprint patterns. This method shows its potential application to fingerprint pattern enhancement in the recognizing process (but not for the identifying process). Synthetic and real images are used to show the capability of the proposed method. The results of enhancing fingerprint patterns by the manual process and our method are evaluated and compared. PMID:14535661

  17. Diagnosis of colon cancer using frequency domain fluorescence imaging technique

    NASA Astrophysics Data System (ADS)

    Dinish, U. S.; Gulati, P.; Murukeshan, V. M.; Seah, L. K.

    2007-03-01

    Early detection and treatment of colon cancer has been associated with better disease prognosis. Conventional and reported optical techniques have limitations in detecting early stages of colon cancer growth. In this paper, a homodyne signal processing assisted frequency domain (FD) fluorescence imaging methodology is proposed for the early diagnosis of colon cancer. Simulated phantom tissues representing the biopsy samples at different stages of colon cancer growth are prepared and used for the imaging study. Selective imaging of healthy and diseased sites simulated in the samples was achieved even for fluorescence emissions having close lifetimes and wavelength values. Possible extension of the methodology for in vivo investigations is also discussed.

  18. Demodulation techniques for the amplitude modulated laser imager

    NASA Astrophysics Data System (ADS)

    Mullen, Linda; Laux, Alan; Cochenour, Brandon; Zege, Eleonora P.; Katsev, Iosif L.; Prikhach, Alexander S.

    2007-10-01

    A new technique has been found that uses in-phase and quadrature phase (I/Q) demodulation to optimize the images produced with an amplitude-modulated laser imaging system. An I/Q demodulator was used to collect the I/Q components of the received modulation envelope. It was discovered that by adjusting the local oscillator phase and the modulation frequency, the backscatter and target signals can be analyzed separately via the I/Q components. This new approach enhances image contrast beyond what was achieved with a previous design that processed only the composite magnitude information.

  19. Emerging techniques and technologies in brain tumor imaging.

    PubMed

    Ellingson, Benjamin M; Bendszus, Martin; Sorensen, A Gregory; Pope, Whitney B

    2014-10-01

    The purpose of this report is to describe the state of imaging techniques and technologies for detecting response of brain tumors to treatment in the setting of multicenter clinical trials. Within currently used technologies, implementation of standardized image acquisition and the use of volumetric estimates and subtraction maps are likely to help to improve tumor visualization, delineation, and quantification. Upon further development, refinement, and standardization, imaging technologies such as diffusion and perfusion MRI and amino acid PET may contribute to the detection of tumor response to treatment, particularly in specific treatment settings. Over the next few years, new technologies such as 2(3)Na MRI and CEST imaging technologies will be explored for their use in expanding the ability to quantitatively image tumor response to therapies in a clinical trial setting.

  20. Correlation of images: technique for mandible biomechanics analysis.

    PubMed

    Yachouh, Jacques; Domergue, Sophie; Loosli, Yannick; Goudot, Patrick

    2011-09-01

    Various experimental or physicomathematical methods can be used to calculate the biomechanical behavior of the mandible. In this study, we tested a new tool for the analysis of mandibular surface strain based on the correlation of images. Five fresh explanted human mandibles were placed in a loading device allowing replication of a physiologic biting exercise. Surfaces of the mandibles were prepared with white and black lacquer. Images were recorded by 2 cameras and analyzed with an algorithm to correlate those images. With the Limess Measurement & Software system and VIC 3D software, we obtained data output concerning deformations, strains, and principal strains. This allowed us to confirm strain distribution on the mandibular corpus and to focus on weak points. Image correlation is a new technique to study mandible biomechanics, which provides accurate measurements on a wide bone surface, with high-definition images and without modification of the structure.

  1. Modern Micro and Nanoparticle-Based Imaging Techniques

    PubMed Central

    Ryvolova, Marketa; Chomoucka, Jana; Drbohlavova, Jana; Kopel, Pavel; Babula, Petr; Hynek, David; Adam, Vojtech; Eckschlager, Tomas; Hubalek, Jaromir; Stiborova, Marie; Kaiser, Jozef; Kizek, Rene

    2012-01-01

    The requirements for early diagnostics as well as effective treatment of insidious diseases such as cancer constantly increase the pressure on development of efficient and reliable methods for targeted drug/gene delivery as well as imaging of the treatment success/failure. One of the most recent approaches covering both the drug delivery as well as the imaging aspects is benefitting from the unique properties of nanomaterials. Therefore a new field called nanomedicine is attracting continuously growing attention. Nanoparticles, including fluorescent semiconductor nanocrystals (quantum dots) and magnetic nanoparticles, have proven their excellent properties for in vivo imaging techniques in a number of modalities such as magnetic resonance and fluorescence imaging, respectively. In this article, we review the main properties and applications of nanoparticles in various in vitro imaging techniques, including microscopy and/or laser breakdown spectroscopy and in vivo methods such as magnetic resonance imaging and/or fluorescence-based imaging. Moreover the advantages of the drug delivery performed by nanocarriers such as iron oxides, gold, biodegradable polymers, dendrimers, lipid based carriers such as liposomes or micelles are also highlighted. PMID:23202187

  2. Contrast-enhancement techniques for particle-image velocimetry.

    PubMed

    Dellenback, P A; Macharivilakathu, J; Pierce, S R

    2000-11-10

    In video-based particle-image velocimetry (PIV) systems for fluid mechanics research, it is sometimes desirable to image seed particles to be smaller than a camera pixel. However, imaging to this size can lead to marginal image contrast such that significant numbers of erroneous velocity vectors can be computed, even for simple flow fields. A variety of image-enhancement techniques suitable for a low-cost PIV system that uses video cameras are examined and tested on three representative flows. Techniques such as linear contrast enhancement and histogram hyperbolization are shown to have good potential for improving the image contrast and hence the accuracy of the data-reduction process with only a 15% increase in the computational time. Some other schemes that were examined appear to be of little practical value in PIV applications. An automated shifting algorithm based on mass conservation is shown to be useful for displacing the second interrogation region in the direction of flow, which minimizes the number of uncorrelated particle images that contribute noise to the data-reduction process. PMID:18354603

  3. Magneto-optical imaging technique for hostile environments: The ghost imaging approach

    SciTech Connect

    Meda, A.; Caprile, A.; Avella, A.; Ruo Berchera, I.; Degiovanni, I. P.; Magni, A.; Genovese, M.

    2015-06-29

    In this paper, we develop an approach to magneto optical imaging (MOI), applying a ghost imaging (GI) protocol to perform Faraday microscopy. MOI is of the utmost importance for the investigation of magnetic properties of material samples, through Weiss domains shape, dimension and dynamics analysis. Nevertheless, in some extreme conditions such as cryogenic temperatures or high magnetic field applications, there exists a lack of domain images due to the difficulty in creating an efficient imaging system in such environments. Here, we present an innovative MOI technique that separates the imaging optical path from the one illuminating the object. The technique is based on thermal light GI and exploits correlations between light beams to retrieve the image of magnetic domains. As a proof of principle, the proposed technique is applied to the Faraday magneto-optical observation of the remanence domain structure of an yttrium iron garnet sample.

  4. Achieving molecular selectivity in imaging using multiphoton Raman spectroscopy techniques

    SciTech Connect

    Holtom, Gary R. ); Thrall, Brian D. ); Chin, Beek Yoke ); Wiley, H Steven ); Colson, Steven D. )

    2000-12-01

    In the case of most imaging methods, contrast is generated either by physical properties of the sample (Differential Image Contrast, Phase Contrast), or by fluorescent labels that are localized to a particular protein or organelle. Standard Raman and infrared methods for obtaining images are based upon the intrinsic vibrational properties of molecules, and thus obviate the need for attached flurophores. Unfortunately, they have significant limitations for live-cell imaging. However, an active Raman method, called Coherent Anti-Stokes Raman Scattering (CARS), is well suited for microscopy, and provides a new means for imaging specific molecules. Vibrational imaging techniques, such as CARS, avoid problems associated with photobleaching and photo-induced toxicity often associated with the use of fluorescent labels with live cells. Because the laser configuration needed to implement CARS technology is similar to that used in other multiphoton microscopy methods, such as two -photon fluorescence and harmonic generation, it is possible to combine imaging modalities, thus generating simultaneous CARS and fluorescence images. A particularly powerful aspect of CARS microscopy is its ability to selectively image deuterated compounds, thus allowing the visualization of molecules, such as lipids, that are chemically indistinguishable from the native species.

  5. Analysis of soil images applying Laplacian Pyramidal techniques

    NASA Astrophysics Data System (ADS)

    Ballesteros, F.; de Castro, J.; Tarquis, A. M.; Méndez, A.

    2012-04-01

    The Laplacian pyramid is a technique for image encoding in which local operators of many scales but identical shape are the basis functions. Our work describes some properties of the filters of the Laplacian pyramid. Specially, we pay attention to Gaussian and fractal behaviour of these filters, and we determine the normal and fractal ranges in the case of single parameter filters, while studying the influence of these filters in soil image processing. One usual property of any image is that neighboring pixels are highly correlated. This property makes inefficient to represent the image directly in terms of the pixel values, because most of the encoded information would be redundant. Burt and Adelson designed a technique, named Laplacian pyramid, for removing image correlation which combines features of predictive and transform methods. This technique is non causal, and its computations are simple and local. The predicted value for each pixel is computed as a local weighted average, using a unimodal weighting function centred on the pixel itself. Pyramid construction is equivalent to convolving the original image with a set of weighting functions determined by a parameter that defines the filter. According to the parameter values, these filters have a behaviour that goes from the Gaussian shape to the fractal. Previous works only analyze Gaussian filters, but we determine the Gaussian and fractal intervals and study the energy of the Laplacian pyramid images according to the filter types. The different behaviour, qualitatively, involves a significant change in statistical characteristics at different levels of iteration, especially the fractal case, which can highlight specific information from the images. Funding provided by Spanish Ministerio de Ciencia e Innovación (MICINN) through project no. AGL2010-21501/AGR is greatly appreciated.

  6. Comparing Imaging and Non-Imaging Techniques for Reducing Background Clutter and Resolving Distant Point Sources

    SciTech Connect

    Wurtz, R; Ziock, K; Fabris, L; Graham, R

    2005-11-10

    To reach maximum sensitivity, any method used to search for orphan sources must be insensitive to local variations of the background. Using imaging and non-imaging techniques, we analyzed the same data acquired by a search instrument deployed as a large-area, coded-mask imager. Data from many passes past a 1 mCi source at 65 m from the instrument were used to construct a model of the instrument response. We then used the model to ''hide'' the source in data taken in a light urban environment. We compared the success of detecting the hidden sources using imaging coded-mask methods, pseudo-imaging based on a zero-area matched filter, and non-imaging using simple thresholding. The results clearly indicate the superiority of imaging with the coded-mask techniques returning the best results.

  7. Comparison of mouse mammary gland imaging techniques and applications: Reflectance confocal microscopy, GFP Imaging, and ultrasound

    PubMed Central

    Tilli, Maddalena T; Parrish, Angela R; Cotarla, Ion; Jones, Laundette P; Johnson, Michael D; Furth, Priscilla A

    2008-01-01

    Background Genetically engineered mouse models of mammary gland cancer enable the in vivo study of molecular mechanisms and signaling during development and cancer pathophysiology. However, traditional whole mount and histological imaging modalities are only applicable to non-viable tissue. Methods We evaluated three techniques that can be quickly applied to living tissue for imaging normal and cancerous mammary gland: reflectance confocal microscopy, green fluorescent protein imaging, and ultrasound imaging. Results In the current study, reflectance confocal imaging offered the highest resolution and was used to optically section mammary ductal structures in the whole mammary gland. Glands remained viable in mammary gland whole organ culture when 1% acetic acid was used as a contrast agent. Our application of using green fluorescent protein expressing transgenic mice in our study allowed for whole mammary gland ductal structures imaging and enabled straightforward serial imaging of mammary gland ducts in whole organ culture to visualize the growth and differentiation process. Ultrasound imaging showed the lowest resolution. However, ultrasound was able to detect mammary preneoplastic lesions 0.2 mm in size and was used to follow cancer growth with serial imaging in living mice. Conclusion In conclusion, each technique enabled serial imaging of living mammary tissue and visualization of growth and development, quickly and with minimal tissue preparation. The use of the higher resolution reflectance confocal and green fluorescent protein imaging techniques and lower resolution ultrasound were complementary. PMID:18215290

  8. Optical design for LED dental lighting with imaging optic technique

    NASA Astrophysics Data System (ADS)

    Kwon, Young-Hoon; Bae, Seung-Chul; Lim, Hae-Ryong; Jang, Ja-Soon

    2011-10-01

    We did a research as follows. First of all, selected optimum LEDs and mixed it for higher CRI, target CCT and illuminance. The following step is optical module design. Light directional characteristics of dental lighting must be concentrated to illuminate a part. Because This part is oral cavity, The feature of illumination pattern is rectangular. For uniformity of illuminance and clearer pattern boundary at reference distance, we designed it as direct type (no use reflector) by imaging optic technique. First, Image is rectangular feature, so object must be the same feature with magnification in general imaging optics. But the emitting surface feature of LED (1W grade) is square or circular generally. For that reason, made object as rectangular source with rectangular lightguide. This optical component was designed for higher efficiency by illumination optic technique. Next, we designed optical lenses based on imaging optic technique for image object feature using Code V. set to high NA for light efficiency in this design. Fundamentally, Finally, This product is luminaire so illumination simulation and result analysis were executed by LightTools as illumination design software.

  9. Techniques for Field Application of Lingual Ultrasound Imaging

    ERIC Educational Resources Information Center

    Gick, Bryan; Bird, Sonya; Wilson, Ian

    2005-01-01

    Techniques are discussed for using ultrasound for lingual imaging in field-related applications. The greatest challenges we have faced distinguishing the field setting from the laboratory setting are the lack of controlled head/transducer movement, and the related issue of tissue compression. Two experiments are reported. First, a pilot study…

  10. Recent Advances in Techniques for Hyperspectral Image Processing

    NASA Technical Reports Server (NTRS)

    Plaza, Antonio; Benediktsson, Jon Atli; Boardman, Joseph W.; Brazile, Jason; Bruzzone, Lorenzo; Camps-Valls, Gustavo; Chanussot, Jocelyn; Fauvel, Mathieu; Gamba, Paolo; Gualtieri, Anthony; Marconcini, Mattia; Tilton, James C.; Trianni, Giovanna

    2009-01-01

    Imaging spectroscopy, also known as hyperspectral imaging, has been transformed in less than 30 years from being a sparse research tool into a commodity product available to a broad user community. Currently, there is a need for standardized data processing techniques able to take into account the special properties of hyperspectral data. In this paper, we provide a seminal view on recent advances in techniques for hyperspectral image processing. Our main focus is on the design of techniques able to deal with the highdimensional nature of the data, and to integrate the spatial and spectral information. Performance of the discussed techniques is evaluated in different analysis scenarios. To satisfy time-critical constraints in specific applications, we also develop efficient parallel implementations of some of the discussed algorithms. Combined, these parts provide an excellent snapshot of the state-of-the-art in those areas, and offer a thoughtful perspective on future potentials and emerging challenges in the design of robust hyperspectral imaging algorithms

  11. Feminist Pedagogy, Body Image, and the Dance Technique Class

    ERIC Educational Resources Information Center

    Barr, Sherrie; Oliver, Wendy

    2016-01-01

    This paper investigates the evolution of feminist consciousness in dance technique class as related to body image, the myth of the perfect body, and the development of feminist pedagogy. Western concert dance forms have often been taught in a manner where imitating the teacher is primary in the learning process. In this traditional scenario,…

  12. Statistical Techniques for Efficient Indexing and Retrieval of Document Images

    ERIC Educational Resources Information Center

    Bhardwaj, Anurag

    2010-01-01

    We have developed statistical techniques to improve the performance of document image search systems where the intermediate step of OCR based transcription is not used. Previous research in this area has largely focused on challenges pertaining to generation of small lexicons for processing handwritten documents and enhancement of poor quality…

  13. Evaluation of optical reflectance techniques for imaging of alveolar structure

    NASA Astrophysics Data System (ADS)

    Unglert, Carolin I.; Namati, Eman; Warger, William C.; Liu, Linbo; Yoo, Hongki; Kang, DongKyun; Bouma, Brett E.; Tearney, Guillermo J.

    2012-07-01

    Three-dimensional (3-D) visualization of the fine structures within the lung parenchyma could advance our understanding of alveolar physiology and pathophysiology. Current knowledge has been primarily based on histology, but it is a destructive two-dimensional (2-D) technique that is limited by tissue processing artifacts. Micro-CT provides high-resolution three-dimensional (3-D) imaging within a limited sample size, but is not applicable to intact lungs from larger animals or humans. Optical reflectance techniques offer the promise to visualize alveolar regions of the large animal or human lung with sub-cellular resolution in three dimensions. Here, we present the capabilities of three optical reflectance techniques, namely optical frequency domain imaging, spectrally encoded confocal microscopy, and full field optical coherence microscopy, to visualize both gross architecture as well as cellular detail in fixed, phosphate buffered saline-immersed rat lung tissue. Images from all techniques were correlated to each other and then to corresponding histology. Spatial and temporal resolution, imaging depth, and suitability for in vivo probe development were compared to highlight the merits and limitations of each technology for studying respiratory physiology at the alveolar level.

  14. New principles in nuclear medicine imaging: a full aperture stereoscopic imaging technique.

    PubMed

    Strocovsky, Sergio G; Otero, Dino

    2010-01-01

    In nuclear medicine, images of planar scintigraphy and single photon emission computerized tomography (SPECT) obtained through gamma camera (GC) appear to be blurred. Alternatively, coded aperture imaging (CAI) can surpass the quality of GC images, but still it is not extensively used due to the decoding complexity of some images and the difficulty in controlling the noise. Summing up, the images obtained through GC are low quality and it is still difficult to implement CAI technique. Here we present a full aperture imaging (FAI) technique which overcomes the problems of CAI ordinary systems. The gamma radiation transmitted through a large single aperture is edge-encoded, taking advantage of the fact that nuclear radiation is spatially incoherent. The novel technique is tested by means of Monte Carlo method with simple and complex sources. Spatial resolution tests and parallax tests of GC versus FAI were made, and three-dimensional capacities of GC versus FAI were analyzed. Simulations have allowed comparison of both techniques under ideal, identical conditions. The results show that FAI technique has greater sensitivity (approximately 100 times) and greater spatial resolution (>2.6 times at 40 cm source-detector distance) than that of GC. FAI technique allows to obtain images with typical resolution of GC short source-detector distance but at longer source-detector distance. The FAI decoding algorithm simultaneously reconstructs four different projections, while GC produces only one projection per acquisition. Our results show it is possible to apply an extremely simple encoded imaging technique, and get three-dimensional radioactivity information. Thus GC-based systems could be substituted, given that FAI technique is simple and it produces four images which may feed stereoscopic systems, substituting in some cases, tomographic reconstructions.

  15. Implementation of Image-Guidance Techniques in Radiation Therapy

    NASA Astrophysics Data System (ADS)

    Thomas, Michael; Clark, Brenda; MacPherson, Miller; Montgomery, Lynn; Gerig, Lee

    2008-06-01

    For more than 100 years, physicists have been a vital part of the medical team required to deliver radiation therapy. Their role encompasses the verification of dose accuracy to the development and implementation of new techniques, the most recent of which is the incorporation of daily image guidance to account for inter- and intra-fraction target changes. For example, computed tomography (CT) integrated into radiotherapy treatment units allows the image-guided treatment of the prostate where the target location depends on the degree of rectal filling--a parameter that changes on timescales from minutes to weeks. Different technology is required for the adequate treatment of small lung tumours since respiration occurs on timescales of seconds. This presentation will review current image-guided techniques.

  16. Clutter removal techniques for GPR images in structure inspection tasks

    NASA Astrophysics Data System (ADS)

    Vuksanovic, Branislav; Bostanudin, Nurul Jihan Farhah

    2012-04-01

    This document analyses the performance of subspace signal processing techniques applied to ground penetrating radar (GPR) images in order to reduce the amount of clutter and noise in the measured GPR image. Two methods considered in this work are Principal Component Analysis (PCA) and Independent Component Analysis (ICA). An approach to combine those two techniques to improve their effectiveness when applied to GPR data is proposed in this paper. The experiments performed to gather GPR data and evaluate proposed algorithms are also described. The aim of undertaken experiments is to replicate conditions found in water reservoirs where cracks and holes in the reservoir foundations and joints cause excessive water leakages and losses to water companies and the UK economy in general. Performance of implemented algorithms is discussed and compared to the results achieved by a highly skilled human - GPR image analyst.

  17. Novel technique in the segmentation of magnetic resonance image

    NASA Astrophysics Data System (ADS)

    Chan, Kwok-Leung

    1996-04-01

    In this investigation, automatic image segmentation is carried out on magnetic resonance image (MRI). A novel technique based on the maximum minimum measure is devised. The measure is improved by combining the smoothing and counting processes, and then normalizing the number of maximum and minimum positions over the region of interest (ROI). Two parameters (MM_H and MM_V) are generated and used for the segmentation. The technique is tested on some brain MRIs of a human male from the Visible Human Project of the National Library of Medicine, National Institutes of Health, USA. Preliminary results indicate that the maximum minimum measure can provide effective parameters for human tissue characterization and image segmentation with an added advantage of faster computation.

  18. A comparison of spotlight synthetic aperture radar image formation techniques

    SciTech Connect

    Knittle, C.D.; Doren, N.E.; Jakowatz, C.V.

    1996-10-01

    Spotlight synthetic aperture radar images can be formed from the complex phase history data using two main techniques: (1) polar-to-cartesian interpolation followed by two-dimensional inverse Fourier transform (2DFFT), and (2) convolution backprojection (CBP). CBP has been widely used to reconstruct medical images in computer aided tomography, and only recently has been applied to form synthetic aperture radar imagery. It is alleged that CBP yields higher quality images because (1) all the Fourier data are used and (2) the polar formatted data is used directly to form a 2D Cartesian image and therefore 2D interpolation is not required. This report compares the quality of images formed by CBP and several modified versions of the 2DFFT method. We show from an image quality point of view that CBP is equivalent to first windowing the phase history data and then interpolating to an exscribed rectangle. From a mathematical perspective, we should expect this conclusion since the same Fourier data are used to form the SAR image. We next address the issue of parallel implementation of each algorithm. We dispute previous claims that CBP is more readily parallelizable than the 2DFFT method. Our conclusions are supported by comparing execution times between massively parallel implementations of both algorithms, showing that both experience similar decreases in computation time, but that CBP takes significantly longer to form an image.

  19. Planning/scheduling techniques for VQ-based image compression

    NASA Technical Reports Server (NTRS)

    Short, Nicholas M., Jr.; Manohar, Mareboyana; Tilton, James C.

    1994-01-01

    The enormous size of the data holding and the complexity of the information system resulting from the EOS system pose several challenges to computer scientists, one of which is data archival and dissemination. More than ninety percent of the data holdings of NASA is in the form of images which will be accessed by users across the computer networks. Accessing the image data in its full resolution creates data traffic problems. Image browsing using a lossy compression reduces this data traffic, as well as storage by factor of 30-40. Of the several image compression techniques, VQ is most appropriate for this application since the decompression of the VQ compressed images is a table lookup process which makes minimal additional demands on the user's computational resources. Lossy compression of image data needs expert level knowledge in general and is not straightforward to use. This is especially true in the case of VQ. It involves the selection of appropriate codebooks for a given data set and vector dimensions for each compression ratio, etc. A planning and scheduling system is described for using the VQ compression technique in the data access and ingest of raw satellite data.

  20. Application of Image Enhancement Techniques to Comets: A Critical Analysis

    NASA Astrophysics Data System (ADS)

    Samarasinha, Nalin H.; Larson, S.; Beshore, E.

    2006-09-01

    Investigation and accurate interpretation of many cometary coma phenomena depend on identification of coma features and their spatial and temporal variations. In many cases, the coma features are only few percent above the ambient coma, requiring the application of image enhancement techniques for easy identification and analysis. In the literature, there are a range of enhancement techniques used for the analysis of coma structures (e.g., Larson and Slaughter 1992, Schleicher and Farnham 2004). We use numerically simulated images to characterize pros and cons of a number of widely used enhancement techniques. In particular, we will identify techniques which are suitable for making measurements post-enhancement as well as the nature of the measurements which are unaffected by the enhancements. An effort will be made to present the results in a quantifiable format rather than with qualitative statements. Finally these enhancements techniques will be used to enhance and analyze the coma morphologies present in actual images of comet Hale-Bopp (C/1995 O1). NHS was supported by NASA Planetary Atmospheres Program.

  1. Further Developments of the Fringe-Imaging Skin Friction Technique

    NASA Technical Reports Server (NTRS)

    Zilliac, Gregory C.

    1996-01-01

    Various aspects and extensions of the Fringe-Imaging Skin Friction technique (FISF) have been explored through the use of several benchtop experiments and modeling. The technique has been extended to handle three-dimensional flow fields with mild shear gradients. The optical and imaging system has been refined and a PC-based application has been written that has made it possible to obtain high resolution skin friction field measurements in a reasonable period of time. The improved method was tested on a wingtip and compared with Navier-Stokes computations. Additionally, a general approach to interferogram-fringe spacing analysis has been developed that should have applications in other areas of interferometry. A detailed error analysis of the FISF technique is also included.

  2. Ambient Mass Spectrometry Imaging Using Direct Liquid Extraction Techniques

    SciTech Connect

    Laskin, Julia; Lanekoff, Ingela

    2015-11-13

    Mass spectrometry imaging (MSI) is a powerful analytical technique that enables label-free spatial localization and identification of molecules in complex samples.1-4 MSI applications range from forensics5 to clinical research6 and from understanding microbial communication7-8 to imaging biomolecules in tissues.1, 9-10 Recently, MSI protocols have been reviewed.11 Ambient ionization techniques enable direct analysis of complex samples under atmospheric pressure without special sample pretreatment.3, 12-16 In fact, in ambient ionization mass spectrometry, sample processing (e.g., extraction, dilution, preconcentration, or desorption) occurs during the analysis.17 This substantially speeds up analysis and eliminates any possible effects of sample preparation on the localization of molecules in the sample.3, 8, 12-14, 18-20 Venter and co-workers have classified ambient ionization techniques into three major categories based on the sample processing steps involved: 1) liquid extraction techniques, in which analyte molecules are removed from the sample and extracted into a solvent prior to ionization; 2) desorption techniques capable of generating free ions directly from substrates; and 3) desorption techniques that produce larger particles subsequently captured by an electrospray plume and ionized.17 This review focuses on localized analysis and ambient imaging of complex samples using a subset of ambient ionization methods broadly defined as “liquid extraction techniques” based on the classification introduced by Venter and co-workers.17 Specifically, we include techniques where analyte molecules are desorbed from solid or liquid samples using charged droplet bombardment, liquid extraction, physisorption, chemisorption, mechanical force, laser ablation, or laser capture microdissection. Analyte extraction is followed by soft ionization that generates ions corresponding to intact species. Some of the key advantages of liquid extraction techniques include the ease

  3. Common aperture techniques for imaging electro-optical sensors

    NASA Astrophysics Data System (ADS)

    1980-02-01

    A multispectral optical imaging system was designed and fabricated to demonstrate the feasibility of utilizing a pointable common optical aperture in conjunction with interchangeable day or night TV sensors and a thermal imaging sensor. Limited processing capability was incorporated to permit mixing of both visible and infrared video of common scenes for more effective all weather electrooptical capability. An optical configuration was established which will accommodate image sensors as well as illuminating and designating/ranging lasers. In the early phases of the program various techniques were evaluated for optimizing spectral separation, gating image intensifiers and minimizing degradation of sensor performance due to insertion of .723 and 1.06 micron laser radiation through the common aperture. Preliminary testing indicates that combining sensors achieves synergistic performance in targeting and identification. Edited monthly R D Status Reports detail the design, fabrication and integration aspects of the program.

  4. Imaging normal pressure hydrocephalus: theories, techniques, and challenges.

    PubMed

    Keong, Nicole C H; Pena, Alonso; Price, Stephen J; Czosnyka, Marek; Czosnyka, Zofia; Pickard, John D

    2016-09-01

    The pathophysiology of NPH continues to provoke debate. Although guidelines and best-practice recommendations are well established, there remains a lack of consensus about the role of individual imaging modalities in characterizing specific features of the condition and predicting the success of CSF shunting. Variability of clinical presentation and imperfect responsiveness to shunting are obstacles to the application of novel imaging techniques. Few studies have sought to interpret imaging findings in the context of theories of NPH pathogenesis. In this paper, the authors discuss the major streams of thought for the evolution of NPH and the relevance of key imaging studies contributing to the understanding of the pathophysiology of this complex condition. PMID:27581307

  5. Accelerated wavefront determination technique for optical imaging through scattering medium

    NASA Astrophysics Data System (ADS)

    He, Hexiang; Wong, Kam Sing

    2016-03-01

    Wavefront shaping applied on scattering light is a promising optical imaging method in biological systems. Normally, optimized modulation can be obtained by a Liquid-Crystal Spatial Light Modulator (LC-SLM) and CCD hardware iteration. Here we introduce an improved method for this optimization process. The core of the proposed method is to firstly detect the disturbed wavefront, and then to calculate the modulation phase pattern by computer simulation. In particular, phase retrieval method together with phase conjugation is most effective. In this way, the LC-SLM based system can complete the wavefront optimization and imaging restoration within several seconds which is two orders of magnitude faster than the conventional technique. The experimental results show good imaging quality and may contribute to real time imaging recovery in scattering medium.

  6. An adaptive technique to maximize lossless image data compression of satellite images

    NASA Technical Reports Server (NTRS)

    Stewart, Robert J.; Lure, Y. M. Fleming; Liou, C. S. Joe

    1994-01-01

    Data compression will pay an increasingly important role in the storage and transmission of image data within NASA science programs as the Earth Observing System comes into operation. It is important that the science data be preserved at the fidelity the instrument and the satellite communication systems were designed to produce. Lossless compression must therefore be applied, at least, to archive the processed instrument data. In this paper, we present an analysis of the performance of lossless compression techniques and develop an adaptive approach which applied image remapping, feature-based image segmentation to determine regions of similar entropy and high-order arithmetic coding to obtain significant improvements over the use of conventional compression techniques alone. Image remapping is used to transform the original image into a lower entropy state. Several techniques were tested on satellite images including differential pulse code modulation, bi-linear interpolation, and block-based linear predictive coding. The results of these experiments are discussed and trade-offs between computation requirements and entropy reductions are used to identify the optimum approach for a variety of satellite images. Further entropy reduction can be achieved by segmenting the image based on local entropy properties then applying a coding technique which maximizes compression for the region. Experimental results are presented showing the effect of different coding techniques for regions of different entropy. A rule-base is developed through which the technique giving the best compression is selected. The paper concludes that maximum compression can be achieved cost effectively and at acceptable performance rates with a combination of techniques which are selected based on image contextual information.

  7. Surface conversion techniques for low energy neutral atom imagers

    NASA Technical Reports Server (NTRS)

    Quinn, J. M.

    1995-01-01

    This investigation has focused on development of key technology elements for low energy neutral atom imaging. More specifically, we have investigated the conversion of low energy neutral atoms to negatively charged ions upon reflection from specially prepared surfaces. This 'surface conversion' technique appears to offer a unique capability of detecting, and thus imaging, neutral atoms at energies of 0.01 - 1 keV with high enough efficiencies to make practical its application to low energy neutral atom imaging in space. Such imaging offers the opportunity to obtain the first instantaneous global maps of macroscopic plasma features and their temporal variation. Through previous in situ plasma measurements, we have a statistical picture of large scale morphology and local measurements of dynamic processes. However, with in situ techniques it is impossible to characterize or understand many of the global plasma transport and energization processes. A series of global plasma images would greatly advance our understanding of these processes and would provide the context for interpreting previous and future in situ measurements. Fast neutral atoms, created from ions that are neutralized in collisions with exospheric neutrals, offer the means for remotely imaging plasma populations. Energy and mass analysis of these neutrals provides critical information about the source plasma distribution. The flux of neutral atoms available for imaging depends upon a convolution of the ambient plasma distribution with the charge exchange cross section for the background neutral population. Some of the highest signals are at relatively low energies (well below 1 keV). This energy range also includes some of the most important plasma populations to be imaged, for example the base of the cleft ion fountain.

  8. Liver MR Imaging in Children: Current Concepts and Technique.

    PubMed

    Chavhan, Govind B; Shelmerdine, Susan; Jhaveri, Kartik; Babyn, Paul S

    2016-01-01

    Magnetic resonance (MR) imaging is increasingly being used for comprehensive evaluation of liver diseases in children because of the lack of radiation and better lesion detection and characterization. Liver examination involves routine sequences such as T2-weighted, balanced steady-state free precession, and in-phase and out-of-phase sequences. Dynamic imaging is an essential component of liver examination to characterize focal lesions and involves capturing snapshots of the passage of contrast material in the arterial, portal venous, equilibrium, and sometimes hepatobiliary phases, generally by using T1-weighted three-dimensional gradient-echo sequences. Optimal arterial phase imaging is important for detection and characterization of hypervascular lesions. In the equilibrium phase, the concentration of contrast material is similar in the microvasculature and the extracellular interstitial space. Some superficial, spreading, inflammatory lesions are better seen on equilibrium phase images. Meticulous attention to intravenous access and use of an appropriate timing method are critical for successful dynamic imaging. Commonly used contrast media for liver imaging include gadolinium-based extracellular contrast agents and hepatobiliary contrast agents. A portion of hepatobiliary contrast agents such as gadoxetate and gadobenate is taken up by hepatocytes and excreted through bile. Hepatobiliary phase images acquired after hepatobiliary contrast agent administration are increasingly used to characterize liver lesions in children, such as focal nodular hyperplasia. Interpretation of liver MR images involves synthesis of information acquired from evaluation of background hepatic parenchyma, detection of lesions, and evaluation of signal intensity characteristics on images obtained with various sequences to arrive at a diagnosis or reasonable differential diagnoses. Understanding the appropriate technique, sequences, and contrast media when performing pediatric liver MR

  9. Comparison of additive image fusion vs. feature-level image fusion techniques for enhanced night driving

    NASA Astrophysics Data System (ADS)

    Bender, Edward J.; Reese, Colin E.; Van Der Wal, Gooitzen S.

    2003-02-01

    The Night Vision & Electronic Sensors Directorate (NVESD) has conducted a series of image fusion evaluations under the Head-Tracked Vision System (HTVS) program. The HTVS is a driving system for both wheeled and tracked military vehicles, wherein dual-waveband sensors are directed in a more natural head-slewed imaging mode. The HTVS consists of thermal and image-intensified TV sensors, a high-speed gimbal, a head-mounted display, and a head tracker. A series of NVESD field tests over the past two years has investigated the degree to which additive (A+B) image fusion of these sensors enhances overall driving performance. Additive fusion employs a single (but user adjustable) fractional weighting for all the features of each sensor's image. More recently, NVESD and Sarnoff Corporation have begun a cooperative effort to evaluate and refine Sarnoff's "feature-level" multi-resolution (pyramid) algorithms for image fusion. This approach employs digital processing techniques to select at each image point only the sensor with the strongest features, and to utilize only those features to reconstruct the fused video image. This selection process is performed simultaneously at multiple scales of the image, which are combined to form the reconstructed fused image. All image fusion techniques attempt to combine the "best of both sensors" in a single image. Typically, thermal sensors are better for detecting military threats and targets, while image-intensified sensors provide more natural scene cues and detect cultural lighting. This investigation will address the differences between additive fusion and feature-level image fusion techniques for enhancing the driver's overall situational awareness.

  10. Improving image classification in a complex wetland ecosystem through image fusion techniques

    NASA Astrophysics Data System (ADS)

    Kumar, Lalit; Sinha, Priyakant; Taylor, Subhashni

    2014-01-01

    The aim of this study was to evaluate the impact of image fusion techniques on vegetation classification accuracies in a complex wetland system. Fusion of panchromatic (PAN) and multispectral (MS) Quickbird satellite imagery was undertaken using four image fusion techniques: Brovey, hue-saturation-value (HSV), principal components (PC), and Gram-Schmidt (GS) spectral sharpening. These four fusion techniques were compared in terms of their mapping accuracy to a normal MS image using maximum-likelihood classification (MLC) and support vector machine (SVM) methods. Gram-Schmidt fusion technique yielded the highest overall accuracy and kappa value with both MLC (67.5% and 0.63, respectively) and SVM methods (73.3% and 0.68, respectively). This compared favorably with the accuracies achieved using the MS image. Overall, improvements of 4.1%, 3.6%, 5.8%, 5.4%, and 7.2% in overall accuracies were obtained in case of SVM over MLC for Brovey, HSV, GS, PC, and MS images, respectively. Visual and statistical analyses of the fused images showed that the Gram-Schmidt spectral sharpening technique preserved spectral quality much better than the principal component, Brovey, and HSV fused images. Other factors, such as the growth stage of species and the presence of extensive background water in many parts of the study area, had an impact on classification accuracies.

  11. Nano-scale Topographical Studies on the Growth Cones of Nerve Cells using AFM

    NASA Astrophysics Data System (ADS)

    Durkaya, Goksel; Zhong, Lei; Rehder, Vincent; Dietz, Nikolaus

    2009-11-01

    Nerve cells are the fundamental units which are responsible for intercommunication within the nervous system. The neurites, fibrous cable-like extensions for information delivery, of nerve cells are tipped by highly motile sensory structures known as the growth cones which execute important functions; neural construction, decision making and navigation during development and regeneration of the nervous system. The highly dynamic subcomponents of the growth cones are important in neural activity. Atomic Force Microscopy (AFM) is the most powerful microscopy technique which is capable of imaging without conductivity constraint and in liquid media. AFM providing nano-scale topographical information on biological structures is also informative on the physical properties such as: elasticity, adhesion, and softness. This contribution focuses on AFM analysis of the growth cones of the nerve cells removed from the buccal ganglion of Helisoma trivolvis. The results of nano-scale topography and softness analysis on growth cone central domain, filopodia and overlying lamellopodium (veil) are presented. The subcomponents of the growth cones of different nerve cells are compared to each other. The results of the analysis are linked to the mechanical properties and internal molecular density distribution of the growth cones.

  12. Advantages and limitations of OM, SEM, TEM and AFM in the study of ancient decorated pottery

    NASA Astrophysics Data System (ADS)

    Arenas-Alatorre, J.; Silva-Velazquez, Y.; Alva Medina, A.; Rivera, M.

    2010-03-01

    This paper presents results from the study of two fragments of pre-Hispanic pottery, decorated with red pigment, using Optical Microscopy (OM), Scanning Electron Microscopy (SEM), High Resolution Transmission Electron Microscopy (HRTEM), Atomic Force Microscopy (AFM) and Magnetic Force Microscopy (MFM). Capabilities and limitations of these techniques in the analysis of archaeological material are highlighted with special emphasis on TEM, AFM and MFM due to their contribution in the study of the pigment layer at micro and nano scale. The analyzed samples come from the archaeological sites of El Tajin and Xochicalco, both in Mexico. Results of conventional TEM and HRTEM analysis of the red pigment showed nanometric Fe2O3 particles in both samples but different particle shape and size distributions: specimen from El Tajin presented irregular particles between 50-100 nm while that from Xochicalco exhibited semispherical shapes in the 3-25 nm range. AFM images showed the topography of the pigments, which are related to the texture of their surface and thus to the production process. Finally, MFM showed different contrast regions suggesting the presence of ferromagnetic elements forming clusters and domain orientations on the color layer.

  13. Applicability of three-dimensional imaging techniques in fetal medicine*

    PubMed Central

    Werner Júnior, Heron; dos Santos, Jorge Lopes; Belmonte, Simone; Ribeiro, Gerson; Daltro, Pedro; Gasparetto, Emerson Leandro; Marchiori, Edson

    2016-01-01

    Objective To generate physical models of fetuses from images obtained with three-dimensional ultrasound (3D-US), magnetic resonance imaging (MRI), and, occasionally, computed tomography (CT), in order to guide additive manufacturing technology. Materials and Methods We used 3D-US images of 31 pregnant women, including 5 who were carrying twins. If abnormalities were detected by 3D-US, both MRI and in some cases CT scans were then immediately performed. The images were then exported to a workstation in DICOM format. A single observer performed slice-by-slice manual segmentation using a digital high resolution screen. Virtual 3D models were obtained from software that converts medical images into numerical models. Those models were then generated in physical form through the use of additive manufacturing techniques. Results Physical models based upon 3D-US, MRI, and CT images were successfully generated. The postnatal appearance of either the aborted fetus or the neonate closely resembled the physical models, particularly in cases of malformations. Conclusion The combined use of 3D-US, MRI, and CT could help improve our understanding of fetal anatomy. These three screening modalities can be used for educational purposes and as tools to enable parents to visualize their unborn baby. The images can be segmented and then applied, separately or jointly, in order to construct virtual and physical 3D models.

  14. Multivariate image processing technique for noninvasive glucose sensing

    NASA Astrophysics Data System (ADS)

    Webb, Anthony J.; Cameron, Brent D.

    2010-02-01

    A potential noninvasive glucose sensing technique was investigated for application towards in vivo glucose monitoring for individuals afflicted with diabetes mellitus. Three dimensional ray tracing simulations using a realistic iris pattern integrated into an advanced human eye model are reported for physiological glucose concentrations ranging between 0 to 500 mg/dL. The anterior chamber of the human eye contains a clear fluid known as the aqueous humor. The optical refractive index of the aqueous humor varies on the order of 1.5x10-4 for a change in glucose concentration of 100 mg/dL. The simulation data was analyzed with a developed multivariate chemometrics procedure that utilizes iris-based images to form a calibration model. Results from these simulations show considerable potential for use of the developed method in the prediction of glucose. For further demonstration, an in vitro eye model was developed to validate the computer based modeling technique. In these experiments, a realistic iris pattern was placed in an analog eye model in which the glucose concentration within the fluid representing the aqueous humor was varied. A series of high resolution digital images were acquired using an optical imaging system. These images were then used to form an in vitro calibration model utilizing the same multivariate chemometric technique demonstrated in the 3-D optical simulations. In general, the developed method exhibits considerable applicability towards its use as an in vivo platform for the noninvasive monitoring of physiological glucose concentration.

  15. Automated Imaging Techniques for Biosignature Detection in Geologic Samples

    NASA Astrophysics Data System (ADS)

    Williford, K. H.

    2015-12-01

    Robust biosignature detection in geologic samples typically requires the integration of morphological/textural data with biogeochemical data across a variety of scales. We present new automated imaging and coordinated biogeochemical analysis techniques developed at the JPL Astrobiogeochemistry Laboratory (abcLab) in support of biosignature detection in terrestrial samples as well as those that may eventually be returned from Mars. Automated gigapixel mosaic imaging of petrographic thin sections in transmitted and incident light (including UV epifluorescence) is supported by a microscopy platform with a digital XYZ stage. Images are acquired, processed, and co-registered using multiple software platforms at JPL and can be displayed and shared using Gigapan, a freely available, web-based toolset (e.g. . Automated large area (cm-scale) elemental mapping at sub-micrometer spatial resolution is enabled by a variable pressure scanning electron microscope (SEM) with a large (150 mm2) silicon drift energy dispersive spectroscopy (EDS) detector system. The abcLab light and electron microscopy techniques are augmented by additional elemental chemistry, mineralogy and organic detection/classification using laboratory Micro-XRF and UV Raman/fluorescence systems, precursors to the PIXL and SHERLOC instrument platforms selected for flight on the NASA Mars 2020 rover mission. A workflow including careful sample preparation followed by iterative gigapixel imaging, SEM/EDS, Micro-XRF and UV fluorescence/Raman in support of organic, mineralogic, and elemental biosignature target identification and follow up analysis with other techniques including secondary ion mass spectrometry (SIMS) will be discussed.

  16. Optical Image Acquisition by Vibrating KNIFE Edge Techniques

    NASA Astrophysics Data System (ADS)

    Samson, Scott A.

    Traditional optical microscopes have inherent limitations in their attainable resolution. These shortcomings are a result of non-propagating evanescent waves being created by the small details in the specimen to be imaged. These problems are circumvented in the Near-field Scanning Optical Microscope (NSOM). Previous NSOMs use physical apertures to sample the optical field created by the specimen. By scanning a sub-wavelength-sized aperture past the specimen, very minute details may be imaged. In this thesis, a new method for obtaining images of various objects is studied. The method is a derivative of scanned knife edge techniques commonly used in optical laboratories. The general setup consists of illuminating a vibrating optically-opaque knife edge placed in close proximity to the object. By detecting only the time-varying optical power and utilizing various signal processing techniques, including computer-subtraction, beat frequency detection, and tomographic reconstruction, two-dimensional images of the object may be formed. In essence, a sampler similar to the aperture NSOMs is created. Mathematics, computer simulations, and low-resolution experiments are used to verify the thesis. Various aspects associated with improving the resolution with regards to NSOM are discussed, both theoretically and practically. The vibrating knife edge as a high- resolution sampler is compared to the physically -small NSOM aperture. Finally, future uses of the vibrating knife edge techniques and further research are introduced. Applicable references and computer programs are listed in appendices.

  17. Image processing of correlated data by experimental design techniques

    SciTech Connect

    Stern, D.

    1987-01-01

    New classes of algorithms are developed for processing of two-dimensional image data imbedded in correlated noise. The algorithms are based on modifications of standard analysis of variance (ANOVA) techniques ensuring their proper operation in dependent noise. The approach taken in the development of procedures is deductive. First, the theory of modified ANOVA (MANOVA) techniques involving one- and two-way layouts are considered for noise models with autocorrelation matrix (ACM) formed by direct multiplication of rows and columns or tensored correlation matrices (TCM) stressing the special case of the first-order Markov process. Next, the techniques are generalized to include arbitrary, wide-sense stationary (WSS) processes. This permits dealing with diagonal masks which have ACM of a general form even for TCM. As further extension, the theory of Latin square (LS) masks is generalized to include dependent noise with TCM. This permits dealing with three different effects of m levels using only m{sup 2} observations rather than m{sup 3}. Since in many image-processing problems, replication of data is possible, the masking techniques are generalized to replicated data for which the replication is TCM dependent. For all procedures developed, algorithms are implemented which ensure real-time processing of images.

  18. Assessment of banana fruit maturity by image processing technique.

    PubMed

    Surya Prabha, D; Satheesh Kumar, J

    2015-03-01

    Maturity stage of fresh banana fruit is an important factor that affects the fruit quality during ripening and marketability after ripening. The ability to identify maturity of fresh banana fruit will be a great support for farmers to optimize harvesting phase which helps to avoid harvesting either under-matured or over-matured banana. This study attempted to use image processing technique to detect the maturity stage of fresh banana fruit by its color and size value of their images precisely. A total of 120 images comprising 40 images from each stage such as under-mature, mature and over-mature were used for developing algorithm and accuracy prediction. The mean color intensity from histogram; area, perimeter, major axis length and minor axis length from the size values, were extracted from the calibration images. Analysis of variance between each maturity stage on these features indicated that the mean color intensity and area features were more significant in predicting the maturity of banana fruit. Hence, two classifier algorithms namely, mean color intensity algorithm and area algorithm were developed and their accuracy on maturity detection was assessed. The mean color intensity algorithm showed 99.1 % accuracy in classifying the banana fruit maturity. The area algorithm classified the under-mature fruit at 85 % accuracy. Hence the maturity assessment technique proposed in this paper could be used commercially to develop a field based complete automatic detection system to take decision on the right time of harvest by the banana growers. PMID:25745200

  19. Dual self-image technique for beam collimation

    NASA Astrophysics Data System (ADS)

    Herrera-Fernandez, Jose Maria; Sanchez-Brea, Luis Miguel; Torcal-Milla, Francisco Jose; Morlanes, Tomas; Bernabeu, Eusebio

    2016-07-01

    We propose an accurate technique for obtaining highly collimated beams, which also allows testing the collimation degree of a beam. It is based on comparing the period of two different self-images produced by a single diffraction grating. In this way, variations in the period of the diffraction grating do not affect to the measuring procedure. Self-images are acquired by two CMOS cameras and their periods are determined by fitting the variogram function of the self-images to a cosine function with polynomial envelopes. This way, loss of accuracy caused by imperfections of the measured self-images is avoided. As usual, collimation is obtained by displacing the collimation element with respect to the source along the optical axis. When the period of both self-images coincides, collimation is achieved. With this method neither a strict control of the period of the diffraction grating nor a transverse displacement, required in other techniques, are necessary. As an example, a LED considering paraxial approximation and point source illumination is collimated resulting a resolution in the divergence of the beam of δ φ =+/- 1.57 μ {rad}.

  20. The Handbook of Medical Image Perception and Techniques

    NASA Astrophysics Data System (ADS)

    Samei, Ehsan; Krupinski, Elizabeth

    2009-12-01

    Peter Ayton; Part V. Optimization and Practical Issues: 25. Optimization of 2D and 3D radiographic systems Jeff Siewerdson; 26. Applications of AFC methodology in optimization of CT imaging systems Kent Ogden and Walter Huda; 27. Perceptual issues in reading mammograms Margarita Zuley; 28. Perceptual optimization of display processing techniques Richard Van Metter; 29. Optimization of display systems Elizabeth Krupinski and Hans Roehrig; 30. Ergonomic radiologist workplaces in the PACS environment Carl Zylack; Part VI. Epilogue: 31. Future prospects of medical image perception Ehsan Samei and Elizabeth Krupinski; Index.

  1. The Handbook of Medical Image Perception and Techniques

    NASA Astrophysics Data System (ADS)

    Samei, Ehsan; Krupinski, Elizabeth

    2014-07-01

    Peter Ayton; Part V. Optimization and Practical Issues: 25. Optimization of 2D and 3D radiographic systems Jeff Siewerdson; 26. Applications of AFC methodology in optimization of CT imaging systems Kent Ogden and Walter Huda; 27. Perceptual issues in reading mammograms Margarita Zuley; 28. Perceptual optimization of display processing techniques Richard Van Metter; 29. Optimization of display systems Elizabeth Krupinski and Hans Roehrig; 30. Ergonomic radiologist workplaces in the PACS environment Carl Zylack; Part VI. Epilogue: 31. Future prospects of medical image perception Ehsan Samei and Elizabeth Krupinski; Index.

  2. Positron imaging techniques for process engineering: recent developments at Birmingham

    NASA Astrophysics Data System (ADS)

    Parker, D. J.; Leadbeater, T. W.; Fan, X.; Hausard, M. N.; Ingram, A.; Yang, Z.

    2008-09-01

    For over 20 years the University of Birmingham has been using positron-emitting radioactive tracers to study engineering processes. The imaging technique of positron emission tomography (PET), widely used for medical applications, has been adapted for these studies, and the complementary technique of positron emission particle tracking (PEPT) has been developed. The radioisotopes are produced using the Birmingham MC40 cyclotron, and a variety of techniques are employed to produce suitable tracers in a wide range of forms. Detectors originally designed for medical use have been modified for engineering applications, allowing measurements to be made on real process equipment, at laboratory or pilot plant scale. This paper briefly reviews the capability of the techniques and introduces a few of the many processes to which they have been applied.

  3. Computer image processing - The Viking experience. [digital enhancement techniques

    NASA Technical Reports Server (NTRS)

    Green, W. B.

    1977-01-01

    Computer processing of digital imagery from the Viking mission to Mars is discussed, with attention given to subjective enhancement and quantitative processing. Contrast stretching and high-pass filtering techniques of subjective enhancement are described; algorithms developed to determine optimal stretch and filtering parameters are also mentioned. In addition, geometric transformations to rectify the distortion of shapes in the field of view and to alter the apparent viewpoint of the image are considered. Perhaps the most difficult problem in quantitative processing of Viking imagery was the production of accurate color representations of Orbiter and Lander camera images.

  4. Quantization of surface rust by using laser imaging techniques

    NASA Astrophysics Data System (ADS)

    Koyuncu, B.; Yasin, A.; Abu-Rezq, A.

    1995-06-01

    Laser speckle interferometry 1,2 and image processing 3,4 have been used to detect and quantize the rust build-up on metal surfaces under water. Speckle information from the sample metal surface was captured by a CCD camera and a frame grabber card. Software techniques were used to convert the image data files into ASCII files in an appropriate format. Three-dimensional surface plots were generated to define the numerical values for the amout of rust build-up.

  5. Image Processing Techniques and Feature Recognition in Solar Physics

    NASA Astrophysics Data System (ADS)

    Aschwanden, Markus J.

    2010-04-01

    This review presents a comprehensive and systematic overview of image-processing techniques that are used in automated feature-detection algorithms applied to solar data: i) image pre-processing procedures, ii) automated detection of spatial features, iii) automated detection and tracking of temporal features (events), and iv) post-processing tasks, such as visualization of solar imagery, cataloguing, statistics, theoretical modeling, prediction, and forecasting. For each aspect the most recent developments and science results are highlighted. We conclude with an outlook on future trends.

  6. Application of digital image processing techniques to astronomical imagery, 1979

    NASA Technical Reports Server (NTRS)

    Lorre, J. J.

    1979-01-01

    Several areas of applications of image processing to astronomy were identified and discussed. These areas include: (1) deconvolution for atmospheric seeing compensation; a comparison between maximum entropy and conventional Wiener algorithms; (2) polarization in galaxies from photographic plates; (3) time changes in M87 and methods of displaying these changes; (4) comparing emission line images in planetary nebulae; and (5) log intensity, hue saturation intensity, and principal component color enhancements of M82. Examples are presented of these techniques applied to a variety of objects.

  7. Mesh adaptation technique for Fourier-domain fluorescence lifetime imaging

    SciTech Connect

    Soloviev, Vadim Y.

    2006-11-15

    A novel adaptive mesh technique in the Fourier domain is introduced for problems in fluorescence lifetime imaging. A dynamical adaptation of the three-dimensional scheme based on the finite volume formulation reduces computational time and balances the ill-posed nature of the inverse problem. Light propagation in the medium is modeled by the telegraph equation, while the lifetime reconstruction algorithm is derived from the Fredholm integral equation of the first kind. Stability and computational efficiency of the method are demonstrated by image reconstruction of two spherical fluorescent objects embedded in a tissue phantom.

  8. 3D Color Digital Elevation Map of AFM Sample

    NASA Technical Reports Server (NTRS)

    2008-01-01

    This color image is a three dimensional (3D) view of a digital elevation map of a sample collected by NASA's Phoenix Mars Lander's Atomic Force Microscope (AFM).

    The image shows four round pits, only 5 microns in depth, that were micromachined into the silicon substrate, which is the background plane shown in red. This image has been processed to reflect the levelness of the substrate.

    A Martian particle only one micrometer, or one millionth of a meter, across is held in the upper left pit.

    The rounded particle shown at the highest magnification ever seen from another world is a particle of the dust that cloaks Mars. Such dust particles color the Martian sky pink, feed storms that regularly envelop the planet and produce Mars' distinctive red soil.

    The particle was part of a sample informally called 'Sorceress' delivered to the AFM on the 38th Martian day, or sol, of the mission (July 2, 2008). The AFM is part of Phoenix's microscopic station called MECA, or the Microscopy, Electrochemistry, and Conductivity Analyzer.

    The AFM was developed by a Swiss-led consortium, with Imperial College London producing the silicon substrate that holds sampled particles.

    The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  9. Adapting content-based image retrieval techniques for the semantic annotation of medical images.

    PubMed

    Kumar, Ashnil; Dyer, Shane; Kim, Jinman; Li, Changyang; Leong, Philip H W; Fulham, Michael; Feng, Dagan

    2016-04-01

    The automatic annotation of medical images is a prerequisite for building comprehensive semantic archives that can be used to enhance evidence-based diagnosis, physician education, and biomedical research. Annotation also has important applications in the automatic generation of structured radiology reports. Much of the prior research work has focused on annotating images with properties such as the modality of the image, or the biological system or body region being imaged. However, many challenges remain for the annotation of high-level semantic content in medical images (e.g., presence of calcification, vessel obstruction, etc.) due to the difficulty in discovering relationships and associations between low-level image features and high-level semantic concepts. This difficulty is further compounded by the lack of labelled training data. In this paper, we present a method for the automatic semantic annotation of medical images that leverages techniques from content-based image retrieval (CBIR). CBIR is a well-established image search technology that uses quantifiable low-level image features to represent the high-level semantic content depicted in those images. Our method extends CBIR techniques to identify or retrieve a collection of labelled images that have similar low-level features and then uses this collection to determine the best high-level semantic annotations. We demonstrate our annotation method using retrieval via weighted nearest-neighbour retrieval and multi-class classification to show that our approach is viable regardless of the underlying retrieval strategy. We experimentally compared our method with several well-established baseline techniques (classification and regression) and showed that our method achieved the highest accuracy in the annotation of liver computed tomography (CT) images.

  10. New techniques for imaging and analyzing lung tissue.

    PubMed Central

    Roggli, V L; Ingram, P; Linton, R W; Gutknecht, W F; Mastin, P; Shelburne, J D

    1984-01-01

    The recent technological revolution in the field of imaging techniques has provided pathologists and toxicologists with an expanding repertoire of analytical techniques for studying the interaction between the lung and the various exogenous materials to which it is exposed. Analytical problems requiring elemental sensitivity or specificity beyond the range of that offered by conventional scanning electron microscopy and energy dispersive X-ray analysis are particularly appropriate for the application of these newer techniques. Electron energy loss spectrometry, Auger electron spectroscopy, secondary ion mass spectrometry, and laser microprobe mass analysis each offer unique advantages in this regard, but also possess their own limitations and disadvantages. Diffraction techniques provide crystalline structural information available through no other means. Bulk chemical techniques provide useful cross-checks on the data obtained by microanalytical approaches. It is the purpose of this review to summarize the methodology of these techniques, acknowledge situations in which they have been used in addressing problems in pulmonary toxicology, and comment on the relative advantages and disadvantages of each approach. It is necessary for an investigator to weigh each of these factors when deciding which technique is best suited for any given analytical problem; often it is useful to employ a combination of two or more of the techniques discussed. It is anticipated that there will be increasing utilization of these technologies for problems in pulmonary toxicology in the decades to come. Images FIGURE 3. A FIGURE 3. B FIGURE 3. C FIGURE 3. D FIGURE 4. FIGURE 5. FIGURE 7. A FIGURE 7. B FIGURE 8. A FIGURE 8. B FIGURE 8. C FIGURE 9. A FIGURE 9. B FIGURE 10. PMID:6090115

  11. MDI: integrity index of cytoskeletal fibers observed by AFM

    NASA Astrophysics Data System (ADS)

    Manghi, Massimo; Bruni, Luca; Croci, Simonetta

    2016-06-01

    The Modified Directional Index (MDI) is a form factor of the angular spectrum computed from the 2D Fourier transform of an image marking the prevalence of rectilinear features throughout the picture. We study some properties of the index and we apply it to AFM images of cell cytoskeleton regions featuring patterns of rectilinear nearly parallel actin filaments as in the case of microfilaments grouped in bundles. The analysis of AFM images through MDI calculation quantifies the fiber directionality changes which could be related to fiber damages. This parameter is applied to the images of Hs 578Bst cell line, non-tumoral and not immortalized human epithelial cell line, irradiated with X-rays at doses equivalent to typical radiotherapy treatment fractions. In the reported samples, we could conclude that the damages are mainly born to the membrane and not to the cytoskeleton. It could be interesting to test the parameter also using other kinds of chemical or physical agents.

  12. Optical Fourier techniques for medical image processing and phase contrast imaging.

    PubMed

    Yelleswarapu, Chandra S; Kothapalli, Sri-Rajasekhar; Rao, D V G L N

    2008-04-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy.

  13. Single-image rectification technique in forensic science.

    PubMed

    González-Jorge, Higinio; Puente, Iván; Eguía, Pablo; Arias, Pedro

    2013-03-01

    Many researchers have been working in Spain to document the communal graves of those assassinated during the Spanish Civil War. This article shows the results obtained with two low-cost photogrammetric techniques for the basic documentation of forensic studies. These low-cost techniques are based on single-image rectification and the correction of the original photo displacement due to the projection and perspective distortions introduced by the lens of the camera. The capability of image rectification is tested in an excavation in the village of Loma de Montija (Burgos, Spain). The results of both techniques are compared with the more accurate data obtained from a laser scanner system RIEGL LMS-Z390i to evaluate the error in the lengths. The first technique uses a camera situated on a triangle-shaped pole at a height of 5 m and the second positions the camera over the grave using a linearly actuated device. The first technique shows measurement errors less than 6%, whereas the second shows greater errors (between 8% and 14%) owing to the positioning of the carbon-fiber cross on an uneven surface.

  14. Single-image rectification technique in forensic science.

    PubMed

    González-Jorge, Higinio; Puente, Iván; Eguía, Pablo; Arias, Pedro

    2013-03-01

    Many researchers have been working in Spain to document the communal graves of those assassinated during the Spanish Civil War. This article shows the results obtained with two low-cost photogrammetric techniques for the basic documentation of forensic studies. These low-cost techniques are based on single-image rectification and the correction of the original photo displacement due to the projection and perspective distortions introduced by the lens of the camera. The capability of image rectification is tested in an excavation in the village of Loma de Montija (Burgos, Spain). The results of both techniques are compared with the more accurate data obtained from a laser scanner system RIEGL LMS-Z390i to evaluate the error in the lengths. The first technique uses a camera situated on a triangle-shaped pole at a height of 5 m and the second positions the camera over the grave using a linearly actuated device. The first technique shows measurement errors less than 6%, whereas the second shows greater errors (between 8% and 14%) owing to the positioning of the carbon-fiber cross on an uneven surface. PMID:23425234

  15. Imaging techniques for infections in the surgical patient

    SciTech Connect

    Gerzof, S.G.; Oates, M.E.

    1988-02-01

    Gallium-67 citrate is easy to use and readily available, but the need to delay imaging for 2 to 4 days after injection hinders rapid diagnosis. Moreover, normal gastrointestinal activity limits its usefulness in evaluating the abdomen. Labeling leukocytes with Indium-111 oxine is a time-consuming, technically involved process, yet the images obtained at 24 hours will usually reveal sites of inflammation or infection. Although the techniques have similar sensitivities, the higher specificity of In-111 makes it the superior agent for many clinical situations. When there are localizing signs or symptoms or a reason to suspect a specific body region, CT or ultrasonography is the imaging modality of choice. Guided needle aspiration can then be performed and is usually diagnostic. Radionuclide imaging with either Ga-67 or In-111 is available as an adjunct if needle aspiration cannot be performed or is inconclusive. Since it provides total-body surveillance, radionuclide imaging is particularly useful for screening when there are no localizing signs and in cases of occult sepsis or fever of unknown origin. If positive, it can direct further imaging with CT or ultrasound. 46 references.

  16. Electronic whiteboard construction using whiteboard and image-locating techniques

    NASA Astrophysics Data System (ADS)

    Chen, Wen-Yuan; Wang, Jing-Wein; Chung, Chin-Ho

    2009-11-01

    We use image-locating techniques and a traditional whiteboard with two cameras to construct an electronic whiteboard (EWB) with a size of 88×176 cm corresponding to 1280-×1024-pixel resolution. We employ two strategies achieve the goal: (1) we develope a modified scale and bilinear interpolation (MSBI) method for pen locating and acceleration operation, and obtain high accuracy detection; and (2) a block parameter database (BPD) is created to improve the accuracy. For the BPD, we divide the whiteboard image into several blocks and record each block parameter (the X and Y coordinates) to follow pen position calculation. Experimental results demonstrate that the MSBI method can correctly calculate the pen position. Additionally, the BPD strategy is better than the traditional method as it improves the accuracy and decreases the maximum detection error from 6 to 3 pixels. The simulation results prove our method is an effective and low-cost EWB technique.

  17. Image Guidance in Radiation Therapy: Techniques and Applications

    PubMed Central

    Kataria, Tejinder

    2014-01-01

    In modern day radiotherapy, the emphasis on reduction on volume exposed to high radiotherapy doses, improving treatment precision as well as reducing radiation-related normal tissue toxicity has increased, and thus there is greater importance given to accurate position verification and correction before delivering radiotherapy. At present, several techniques that accomplish these goals impeccably have been developed, though all of them have their limitations. There is no single method available that eliminates treatment-related uncertainties without considerably adding to the cost. However, delivering “high precision radiotherapy” without periodic image guidance would do more harm than treating large volumes to compensate for setup errors. In the present review, we discuss the concept of image guidance in radiotherapy, the current techniques available, and their expected benefits and pitfalls. PMID:25587445

  18. Optical Imaging Techniques for Point-of-care Diagnostics

    PubMed Central

    Zhu, Hongying; Isikman, Serhan O.; Mudanyali, Onur; Greenbaum, Alon; Ozcan, Aydogan

    2012-01-01

    Improving the access to effective and affordable healthcare has long been a global endeavor. In this quest, the development of cost-effective and easy-to-use medical testing equipment that enable rapid and accurate diagnosis is essential to reduce the time and costs associated with healthcare services. To this end, point-of-care (POC) diagnostics plays a crucial role in healthcare delivery in both the developed and developing countries by bringing medical testing to patients, or to sites near patients. As the diagnosis of a wide range of diseases, including various types of cancers and many endemics relies on optical techniques, numerous compact and cost-effective optical imaging platforms have been developed in recent years for use at the POC. Here, we review the state-of-the-art optical imaging techniques that can have significant impact on global health by facilitating effective and affordable POC diagnostics. PMID:23044793

  19. Techniques for RNA in vivo imaging in plants.

    PubMed

    Tilsner, Jens

    2015-04-01

    Since the discovery of small RNAs and RNA silencing, RNA biology has taken a centre stage in cell and developmental biology. Small RNAs, but also mRNAs and other types of cellular and viral RNAs are processed at specific subcellular localizations. To fully understand cellular RNA metabolism and the various processes influenced by it, techniques are required that permit the sequence-specific tracking of RNAs in living cells. A variety of methods for RNA visualization have been developed since the 1990s, but plant cells pose particular challenges and not all approaches are applicable to them. On the other hand, plant RNA metabolism is particularly diverse and RNAs are even transported between cells, so RNA imaging can potentially provide many valuable insights into plant function at the cellular and tissue level. This Short Review briefly introduces the currently available techniques for plant RNA in vivo imaging and discusses their suitability for different biological questions.

  20. Validation of an image simulation technique for two computed radiography systems: An application to neonatal imaging

    SciTech Connect

    Smans, Kristien; Vandenbroucke, Dirk; Pauwels, Herman; Struelens, Lara; Vanhavere, Filip; Bosmans, Hilde

    2010-05-15

    Purpose: The purpose of this study is to develop a computer model to simulate the image acquisition for two computed radiography (CR) imaging systems used for neonatal chest imaging: (1) The Agfa ADC Compact, a flying spot reader with powder phosphor image plates (MD 40.0); and (2) the Agfa DX-S, a line-scanning CR reader with needle crystal phosphor image plates (HD 5.0). The model was then applied to compare the image quality of the two CR imaging systems. Methods: Monte Carlo techniques were used to simulate the transport of primary and scattered x rays in digital x-ray systems. The output of the Monte Carlo program was an image representing the energy absorbed in the detector material. This image was then modified using physical characteristics of the CR imaging systems to account for the signal intensity variations due to the heel effect along the anode-cathode axis, the spatial resolution characteristics of the imaging system, and the various sources of image noise. The simulation was performed for typical acquisition parameters of neonatal chest x-ray examinations. To evaluate the computer model, the authors compared the threshold-contrast detectability in simulated and experimentally acquired images of a contrast-detail phantom. Threshold-contrast curves were computed using a commercially available scoring program. Results: The threshold-contrast curves of the simulated and experimentally acquired images show good agreement; for the two CR systems, 93% of the threshold diameters calculated from the simulated images fell within the confidence intervals of the threshold diameter calculated from the experimentally assessed images. Moreover, the superiority of needle based CR plates for neonatal imaging was confirmed. Conclusions: The good agreement between simulated and experimental acquired results indicates that the computer model is accurate.

  1. Analysis of Cultural Heritage by Accelerator Techniques and Analytical Imaging

    NASA Astrophysics Data System (ADS)

    Ide-Ektessabi, Ari; Toque, Jay Arre; Murayama, Yusuke

    2011-12-01

    In this paper we present the result of experimental investigation using two very important accelerator techniques: (1) synchrotron radiation XRF and XAFS; and (2) accelerator mass spectrometry and multispectral analytical imaging for the investigation of cultural heritage. We also want to introduce a complementary approach to the investigation of artworks which is noninvasive and nondestructive that can be applied in situ. Four major projects will be discussed to illustrate the potential applications of these accelerator and analytical imaging techniques: (1) investigation of Mongolian Textile (Genghis Khan and Kublai Khan Period) using XRF, AMS and electron microscopy; (2) XRF studies of pigments collected from Korean Buddhist paintings; (3) creating a database of elemental composition and spectral reflectance of more than 1000 Japanese pigments which have been used for traditional Japanese paintings; and (4) visible light-near infrared spectroscopy and multispectral imaging of degraded malachite and azurite. The XRF measurements of the Japanese and Korean pigments could be used to complement the results of pigment identification by analytical imaging through spectral reflectance reconstruction. On the other hand, analysis of the Mongolian textiles revealed that they were produced between 12th and 13th century. Elemental analysis of the samples showed that they contained traces of gold, copper, iron and titanium. Based on the age and trace elements in the samples, it was concluded that the textiles were produced during the height of power of the Mongol empire, which makes them a valuable cultural heritage. Finally, the analysis of the degraded and discolored malachite and azurite demonstrates how multispectral analytical imaging could be used to complement the results of high energy-based techniques.

  2. Image-Processing Techniques for the Creation of Presentation-Quality Astronomical Images

    NASA Astrophysics Data System (ADS)

    Rector, Travis A.; Levay, Zoltan G.; Frattare, Lisa M.; English, Jayanne; Pu'uohau-Pummill, Kirk

    2007-02-01

    The quality of modern astronomical data and the agility of current image-processing software enable the visualization of data in a way that exceeds the traditional definition of an astronomical image. Two developments in particular have led to a fundamental change in how astronomical images can be assembled. First, the availability of high-quality multiwavelength and narrowband data allow for images that do not correspond to the wavelength sensitivity of the human eye, thereby introducing ambiguity in the usage and interpretation of color. Second, many image-processing software packages now use a layering metaphor that allows for any number of astronomical data sets to be combined into a color image. With this technique, images with as many as eight data sets have been produced. Each data set is intensity-scaled and colorized independently, creating an immense parameter space that can be used to assemble the image. Since such images are intended for data visualization, scaling and color schemes must be chosen that best illustrate the science. A practical guide is presented on how to use the layering metaphor to generate publication-ready astronomical images from as many data sets as desired. A methodology is also given on how to use intensity scaling, color, and composition to create contrasts in an image that highlight the scientific detail. Examples of image creation are discussed.

  3. Esophageal cancer: anatomic particularities, staging, and imaging techniques.

    PubMed

    Encinas de la Iglesia, J; Corral de la Calle, M A; Fernández Pérez, G C; Ruano Pérez, R; Álvarez Delgado, A

    2016-01-01

    Cancer of the esophagus is a tumor with aggressive behavior that is usually diagnosed in advanced stages. The absence of serosa allows it to spread quickly to neighboring mediastinal structures, and an extensive lymphatic drainage network facilitates tumor spread even in early stages. The current TNM classification, harmonized with the classification for gastric cancer, provides new definitions for the anatomic classification, adds non-anatomic characteristics of the tumor, and includes tumors of the gastroesophageal junction. Combining endoscopic ultrasound, computed tomography, positron emission tomography, and magnetic resonance imaging provides greater accuracy in determining the initial clinical stage, and these imaging techniques play an essential role in the selection, planning, and evaluation of treatment. In this article, we review some particularities that explain the behavior of this tumor and we describe the current TNM staging system; furthermore, we discuss the different imaging tests available for its evaluation and include a diagnostic algorithm.

  4. [Current Development of Breast-Specific Gamma Imaging (BSGI) Technique].

    PubMed

    Sun, Da; Chen, Weijun

    2015-03-01

    Breast-Specific Gamma Imaging (BSGI) is an improved and optimizing nuclear medicine breast imaging technique on the basis of traditional gamma camera. It uses a high resolution, small field-of-view scintilla detector. The detector is designed with 3 073 individual detector crystals and 48 position-sensitive photomultiplier tubes. The FOV of detector is 15 cm x 20 cm, and optimal system resolution for breast imaging is 3 mm, can detect the diameter of only 2-3 mm small lesions. BSGI has better sensitivity in detecting subcentimetre or nonpalpable breast cancer. The sensitivity for the diagnosis of breast cancer is high, not influenced by the density of the breast tissue, implants, architectural distortion-or scars from prior surgery or radiation. So it is called a high resolution, small field-of-view breast-specific gamma camera. PMID:26204740

  5. Light and sound - emerging imaging techniques for inflammatory bowel disease

    PubMed Central

    Knieling, Ferdinand; Waldner, Maximilian J

    2016-01-01

    Patients with inflammatory bowel disease are known to have a high demand of recurrent evaluation for therapy and disease activity. Further, the risk of developing cancer during the disease progression is increasing from year to year. New, mostly non-radiant, quick to perform and quantitative methods are challenging, conventional endoscopy with biopsy as gold standard. Especially, new physical imaging approaches utilizing light and sound waves have facilitated the development of advanced functional and molecular modalities. Besides these advantages they hold the promise to predict personalized therapeutic responses and to spare frequent invasive procedures. Within this article we highlight their potential for initial diagnosis, assessment of disease activity and surveillance of cancer development in established techniques and recent advances such as wide-view full-spectrum endoscopy, chromoendoscopy, autofluorescence endoscopy, endocytoscopy, confocal laser endoscopy, multiphoton endoscopy, molecular imaging endoscopy, B-mode and Doppler ultrasound, contrast-enhanced ultrasound, ultrasound molecular imaging, and elastography. PMID:27433080

  6. Processing techniques for digital sonar images from GLORIA.

    USGS Publications Warehouse

    Chavez, P.S.

    1986-01-01

    Image processing techniques have been developed to handle data from one of the newest members of the remote sensing family of digital imaging systems. This paper discusses software to process data collected by the GLORIA (Geological Long Range Inclined Asdic) sonar imaging system, designed and built by the Institute of Oceanographic Sciences (IOS) in England, to correct for both geometric and radiometric distortions that exist in the original 'raw' data. Preprocessing algorithms that are GLORIA-specific include corrections for slant-range geometry, water column offset, aspect ratio distortion, changes in the ship's velocity, speckle noise, and shading problems caused by the power drop-off which occurs as a function of range.-from Author

  7. Bioluminescence: a versatile technique for imaging cellular and molecular features

    PubMed Central

    Paley, Miranda A.

    2016-01-01

    Bioluminescence is a ubiquitous imaging modality for visualizing biological processes in vivo. This technique employs visible light and interfaces readily with most cell and tissue types, making it a versatile technology for preclinical studies. Here we review basic bioluminescence imaging principles, along with applications of the technology that are relevant to the medicinal chemistry community. These include noninvasive cell tracking experiments, analyses of protein function, and methods to visualize small molecule metabolites. In each section, we also discuss how bioluminescent tools have revealed insights into experimental therapies and aided drug discovery. Last, we highlight the development of new bioluminescent tools that will enable more sensitive and multi-component imaging experiments and, thus, expand our broader understanding of living systems. PMID:27594981

  8. Light and sound - emerging imaging techniques for inflammatory bowel disease.

    PubMed

    Knieling, Ferdinand; Waldner, Maximilian J

    2016-07-01

    Patients with inflammatory bowel disease are known to have a high demand of recurrent evaluation for therapy and disease activity. Further, the risk of developing cancer during the disease progression is increasing from year to year. New, mostly non-radiant, quick to perform and quantitative methods are challenging, conventional endoscopy with biopsy as gold standard. Especially, new physical imaging approaches utilizing light and sound waves have facilitated the development of advanced functional and molecular modalities. Besides these advantages they hold the promise to predict personalized therapeutic responses and to spare frequent invasive procedures. Within this article we highlight their potential for initial diagnosis, assessment of disease activity and surveillance of cancer development in established techniques and recent advances such as wide-view full-spectrum endoscopy, chromoendoscopy, autofluorescence endoscopy, endocytoscopy, confocal laser endoscopy, multiphoton endoscopy, molecular imaging endoscopy, B-mode and Doppler ultrasound, contrast-enhanced ultrasound, ultrasound molecular imaging, and elastography. PMID:27433080

  9. Esophageal cancer: anatomic particularities, staging, and imaging techniques.

    PubMed

    Encinas de la Iglesia, J; Corral de la Calle, M A; Fernández Pérez, G C; Ruano Pérez, R; Álvarez Delgado, A

    2016-01-01

    Cancer of the esophagus is a tumor with aggressive behavior that is usually diagnosed in advanced stages. The absence of serosa allows it to spread quickly to neighboring mediastinal structures, and an extensive lymphatic drainage network facilitates tumor spread even in early stages. The current TNM classification, harmonized with the classification for gastric cancer, provides new definitions for the anatomic classification, adds non-anatomic characteristics of the tumor, and includes tumors of the gastroesophageal junction. Combining endoscopic ultrasound, computed tomography, positron emission tomography, and magnetic resonance imaging provides greater accuracy in determining the initial clinical stage, and these imaging techniques play an essential role in the selection, planning, and evaluation of treatment. In this article, we review some particularities that explain the behavior of this tumor and we describe the current TNM staging system; furthermore, we discuss the different imaging tests available for its evaluation and include a diagnostic algorithm. PMID:27469407

  10. Multispectral fluorescence imaging techniques for nondestructive food safety inspection

    NASA Astrophysics Data System (ADS)

    Kim, Moon S.; Lefcourt, Alan M.; Chen, Yud-Ren

    2004-03-01

    The use of spectral sensing has gained acceptance as a rapid means for nondestructive inspection of postharvest food produce. Current technologies generally use color or a single wavelength camera technology. The applicability and sensitivity of these techniques can be expanded through the use of multiple wavelengths. Reflectance in the Vis/NIR is the prevalent spectral technique. Fluorescence, compared to reflectance, is regarded as a more sensitive technique due to its dynamic responses to subtle changes in biological entities. Our laboratory has been exploring fluorescence as a potential means for detection of quality and wholesomeness of food products. Applications of fluorescence sensing require an understanding of the spectral characteristics emanating from constituents and potential contaminants. A number of factors affecting fluorescence emission characteristics are discussed. Because of relatively low fluorescence quantum yield from biological samples, a system with a powerful pulse light source such as a laser coupled with a gated detection device is used to harvest fluorescence, in the presence of ambient light. Several fluorescence sensor platforms developed in our laboratory, including hyperspectral imaging, and laser-induced fluorescence (LIF) and steady-state fluorescence imaging systems with multispectral capabilities are presented. We demonstrate the potential uses of recently developed fluorescence imaging platforms in food safety inspection of apples contaminated with animal feces.

  11. Non-integer expansion embedding techniques for reversible image watermarking

    NASA Astrophysics Data System (ADS)

    Xiang, Shijun; Wang, Yi

    2015-12-01

    This work aims at reducing the embedding distortion of prediction-error expansion (PE)-based reversible watermarking. In the classical PE embedding method proposed by Thodi and Rodriguez, the predicted value is rounded to integer number for integer prediction-error expansion (IPE) embedding. The rounding operation makes a constraint on a predictor's performance. In this paper, we propose a non-integer PE (NIPE) embedding approach, which can proceed non-integer prediction errors for embedding data into an audio or image file by only expanding integer element of a prediction error while keeping its fractional element unchanged. The advantage of the NIPE embedding technique is that the NIPE technique can really bring a predictor into full play by estimating a sample/pixel in a noncausal way in a single pass since there is no rounding operation. A new noncausal image prediction method to estimate a pixel with four immediate pixels in a single pass is included in the proposed scheme. The proposed noncausal image predictor can provide better performance than Sachnev et al.'s noncausal double-set prediction method (where data prediction in two passes brings a distortion problem due to the fact that half of the pixels were predicted with the watermarked pixels). In comparison with existing several state-of-the-art works, experimental results have shown that the NIPE technique with the new noncausal prediction strategy can reduce the embedding distortion for the same embedding payload.

  12. Current imaging techniques in rheumatology: MRI, scintigraphy and PET

    PubMed Central

    Sudoł-Szopińska, Iwona; Ćwikła, Jarosław B.

    2013-01-01

    Summary The first-line imaging technique for diagnosis inflammation in musculo-skeletal organs in rheumatoid arthritis (RA) is planar X-ray examination, which was for many years the first and the only single tool for RA diagnostics and response evaluation. Today, in the era of more aggressive RA treatment, ultrasound examination (US) and magnetic resonance imaging (MRI) are also frequently used. US is used to detect early signs of inflammation within the soft tissue. MRI allows to assess the soft tissue and bone marrow involvement in case of inflammation and/or infection. MRI is capable of detecting more inflammatory lesions and erosions than US, X-ray, or CT. Standard scintigraphy plays a crucial role, and data from positron emission tomography (PET) are also promising. These functional imaging techniques are used in detection of inflammation and/or infection in case of ambiguous results being obtained by other techniques or at other clinics. In patients with RA, scintigraphy plays a key role in the differential diagnosis of hip, knee, etc. endoprosthesis disorders, including mechanical or septic loosening. PMID:24115960

  13. Prewarping techniques in imaging: applications in nanotechnology and biotechnology

    NASA Astrophysics Data System (ADS)

    Poonawala, Amyn; Milanfar, Peyman

    2005-03-01

    In all imaging systems, the underlying process introduces undesirable distortions that cause the output signal to be a warped version of the input. When the input to such systems can be controlled, pre-warping techniques can be employed which consist of systematically modifying the input such that it cancels out (or compensates for) the process losses. In this paper, we focus on the mask (reticle) design problem for 'optical micro-lithography', a process similar to photographic printing used for transferring binary circuit patterns onto silicon wafers. We use a pixel-based mask representation and model the above process as a cascade of convolution (aerial image formation) and thresholding (high-contrast recording) operations. The pre-distorted mask is obtained by minimizing the norm of the difference between the 'desired' output image and the 'reproduced' output image. We employ the regularization framework to ensure that the resulting masks are close-to-binary as well as simple and easy to fabricate. Finally, we provide insight into two additional applications of pre-warping techniques. First is 'e-beam lithography', used for fabricating nano-scale structures, and second is 'electronic visual prosthesis' which aims at providing limited vision to the blind by using a prosthetic retinally implanted chip capable of electrically stimulating the retinal neuron cells.

  14. Study on classification of pork quality using hyperspectral imaging technique

    NASA Astrophysics Data System (ADS)

    Zeng, Shan; Bai, Jun; Wang, Haibin

    2015-12-01

    The relative problems' research of chilled meat, thawed meat and spoiled meat discrimination by hyperspectral image technique were proposed, such the section of feature wavelengths, et al. First, based on 400 ~ 1000nm range hyperspectral image data of testing pork samples, by K-medoids clustering algorithm based on manifold distance, we select 30 important wavelengths from 753 wavelengths, and thus select 8 feature wavelengths (454.4, 477.5, 529.3, 546.8, 568.4, 580.3, 589.9 and 781.2nm) based on the discrimination value. Then 8 texture features of each image under 8 feature wavelengths were respectively extracted by two-dimensional Gabor wavelets transform as pork quality feature. Finally, we build a pork quality classification model using the fuzzy C-mean clustering algorithm. Through the experiment of extracting feature wavelengths, we found that although the hyperspectral images between adjacent bands have a strong linear correlation, they show a significant non-linear manifold relationship from the entire band. K-medoids clustering algorithm based on manifold distance used in this paper for selecting the characteristic wavelengths, which is more reasonable than traditional principal component analysis (PCA). Through the classification result, we conclude that hyperspectral imaging technology can distinguish among chilled meat, thawed meat and spoiled meat accurately.

  15. New imaging technique gets under the skin...deep

    SciTech Connect

    Radousky, H; Demos, S

    2000-11-01

    Using a combination of simple optical techniques, plain old white light, and image processing, two Lawrence Livermore researchers and a colleague from the City College of New York (CCNY) have developed a technique for imaging tissue structures--tendons, veins, tumors--deep beneath the skin. The ultimate goal of this research is to dramatically improve the ability to perform minimally invasive cancer detection. ''With a technique called spectral polarization difference imaging [SPDI], we use different wavelengths of light to reach different depths. We also use the polarization properties of the light to help us select the light that penetrates into the tissue and is reflected back out of the tissue as opposed to the light that bounces off the tissue surface,'' says Livermore physicist Harry Radousky, acting Director of University Relations. ''We then image the tissue structures at the different depths, based on how these structures absorb, scatter, and depolarize light. This technique, combined with fiber optics, charge-coupled-device cameras, and image enhancement calculations, allows us to image up to 1.5 centimeters inside tissue, far deeper than the millimeter depths managed by other existing optical techniques.'' The basic research to develop this technique was funded by the Department of Energy through one of its centers of excellence in laser medicine--the DOE Center for Laser Imaging and Cancer Diagnostics directed by Robert Alfano, M.D., at CCNY. A branch of this center is hosted at the Laboratory within the Materials Research Institute. wavelengths in the visible spectrum are scattered and absorbed within the tissue. For even longer wavelengths--those in the near-infrared spectral region--scattering and absorption of the photons is even further reduced.'' The light that passes through the filter then passes through a polarizer. The light that finally hits the tissue sample is thus not only of a given wavelength but also of a selected polarization. As

  16. Sedimentology of Martian Gravels from Mardi Twilight Imaging: Techniques

    NASA Technical Reports Server (NTRS)

    Garvin, James B.; Malin, Michael C.; Minitti, M. E.

    2014-01-01

    Quantitative sedimentologic analysis of gravel surfaces dominated by pebble-sized clasts has been employed in an effort to untangle aspects of the provenance of surface sediments on Mars using Curiosity's MARDI nadir-viewing camera operated at twilight Images have been systematically acquired since sol 310 providing a representative sample of gravel-covered surfaces since the rover departed the Shaler region. The MARDI Twilight imaging dataset offers approximately 1 millimeter spatial resolution (slightly out of focus) for patches beneath the rover that cover just under 1 m2 in area, under illumination that makes clast size and inter-clast spacing analysis relatively straightforward using semi- automated codes developed for use with nadir images. Twilight images are utilized for these analyses in order to reduce light scattering off dust deposited on the front MARDI lens element during the terminal stages of Curiosity's entry, descent and landing. Such scattering is worse when imaging bright, directly-illuminated surfaces; twilight imaging times yield diffusely-illuminated surfaces that improve the clarity of the resulting MARDI product. Twilight images are obtained between 10-30 minutes after local sunset, governed by the timing of the end of the no-heat window for the camera. Techniques were also utilized to examine data terrestrial locations (the Kau Desert in Hawaii and near Askja Caldera in Iceland). Methods employed include log hyperbolic size distribution (LHD) analysis and Delauney Triangulation (DT) inter-clast spacing analysis. This work extends the initial results reported in Yingst et al., that covered the initial landing zone, to the Rapid-Transit Route (RTR) towards Mount Sharp.

  17. Can imaging techniques measure neuroprotection and remyelination in multiple sclerosis?

    PubMed

    Zivadinov, Robert

    2007-05-29

    MRI is the most important paraclinical measure for assessing and monitoring the pathologic changes implicated in the onset and progression of multiple sclerosis (MS). Conventional MRI sequences, such as T1-weighted gadolinium-enhanced and spin-echo T2-weighted imaging, are unable to provide full details about the degree of inflammation and underlying neurodegenerative changes. Newer nonconventional MRI techniques have the potential to detect clinical impairment, disease progression, accumulation of disability, and the neuroprotective effects of treatment. Unenhanced T1-weighted imaging can reveal hypointense black holes, a measure of chronic neurodegeneration. Two- and three-dimensional fluid-attenuated inversion recovery sequences allow better identification of cortical lesions. Ultrahigh-field strength MRI has the potential to detect subpial cortical and deep gray matter lesions. Magnetization transfer imaging is increasingly used to characterize the evolution of MS lesions and normal-appearing brain tissue. Evidence suggests that the dynamics of magnetization transfer changes correlate with the extent of demyelination and remyelination. Magnetic resonance spectroscopy, which provides details on tissue biochemistry, metabolism, and function, also has the capacity to reveal neuroprotective mechanisms. By measuring the motion of water, diffusion imaging can provide information about the orientation, size, and geometry of tissue damage in white and gray matter. Functional MRI may help clarify the brain's plasticity-dependent compensatory mechanisms in patients with MS. High-resolution microautoradiography and new contrast agents are proving to be sensitive means for characterizing molecular markers of disease activity, such as activated microglia and macrophages. Optical coherence tomography, a new research technique, makes it possible to investigate relevant physiologic systems that provide accurate measures of tissue changes secondary to the MS disease process

  18. New techniques for imaging photon-counting and particle detectors

    NASA Astrophysics Data System (ADS)

    Lapington, Jonathan Stephen

    Since the advent of space-based astronomy in the early 1960's, there has been a need for space-qualified detectors with sufficient sensitivity and resolution to detect and image single photons, ions or electrons. This thesis describes a research programme to develop detectors that fulfil these requirements. I begin by describing the role of detectors in space astronomy and follow with a review of detector technologies, with particular emphasis on imaging techniques. Conductive charge division image readouts offer high performance, simplicity, and flexibility and their potential is investigated in both theory and practice. I introduce the basic design concept and discuss the fundamental factors limiting performance in relation to physical design and to underlying physical processes. Readout manufacturing techniques are reviewed and a novel method presented. I describe specific space and ground-based readout applications which proved valuable in teaching lessons and raising questions. These questions initiated an experimental programme, whose goals were to understand limiting physical processes and find techniques to overcome them. Results are presented, and the innovation of the progressive geometry readout technique, which this programme also spawned, is described. Progressive geometry readout devices, such as the Vernier anode, offer dramatically improved performance and have been successfully flight-proven. I describe the development of a Vernier readout for the J-PEX sounding rocket experiment, and discuss the instrument calibration and the flight programme. First investigations into a next generation of charge division readout design are presented. These devices will use charge comparison instead of amplitude measurement to further enhance resolution and count rate capability. In conclusion, I summarize the advances made during the course of this research, and discuss ongoing technological developments and further work which will enable MCP detectors to

  19. Study of air pollution plumes with imaging techniques

    SciTech Connect

    Setzer, A.W.

    1982-01-01

    This work examines the possibilities of atmospheric dispersion studies through the use of small scale images of air pollution plumes, particularly through the use of Landsat imagery. The major points are: 1) A historical description of the uses of imaging techniques in atmospheric and plume dispersion studies. 2) A review of dispersion theories used with smoke and air pollution photography. 3) A study of a plume (up to 200 km) spreading over the ocean and visible in Landsat images is developed. Sixteen cases of this plume indicated that its shape and length depend mainly on the wind speed. Long plumes were characteristic of winds stronger than 5 m/s and spread within an angle of 5/sup 0/ to 7.5/sup 0/. An association with Reynolds' (1983) experiments is made in spite of a difference of six orders of magnitude between the length of the plumes in these two works. Pasquill's (1961) horizontal dispersion coefficients were within an expected variation when compared to the values measured from the images. Nevertheless, this variation is associated with limitations in the dispersion equation and in the dispersion coefficients. 4) A study of Landsat multi-spectral data showed that plumes over water have their own spectral signature and that they can be located with an unsupervised classification technique (Cluster). 5) The remote sensing of plumes is suggested as a viable tool for environmental problems such as acid rain and long-range transport of air pollutants. The use of existing (as well as future) satellite images is a virtually unexplored source of data for environmental studies.

  20. Calibrated imaging radar polarimetry - Technique, examples, and applications

    NASA Technical Reports Server (NTRS)

    Zebker, Howard A.; Van Zyl, Jakob J.; Durden, Stephen L.; Norikane, Lynne

    1991-01-01

    The authors developed a calibration procedure for imaging radar polarimeters and applied it to a set of images acquired by the NASA DC-8 multifrequency radar system. The technique requires the use of ground reflectors known cross-section for absolute calibration, that is, solution for sigma exp 0; however, the image data themselves can usually provide all information necessary for phase calibration and for antenna crosstalk correction. The accuracy of the approach, as measured by calculating the cross-section residuals of known targets in each calibrated scene, is on the order of +/- 1-2 dB at P- and C-band, but improves to +/- 0.5 dB at L-band. The authors present the results of applying this technique to radar scenes of lava flows of varying roughness, temperate and tropical rain forests, and ocean water surfaces. They also present several example applications which are feasible with calibrated data but which would be difficult to implement with uncalibrated data.

  1. Kalman filter techniques for accelerated Cartesian dynamic cardiac imaging.

    PubMed

    Feng, Xue; Salerno, Michael; Kramer, Christopher M; Meyer, Craig H

    2013-05-01

    In dynamic MRI, spatial and temporal parallel imaging can be exploited to reduce scan time. Real-time reconstruction enables immediate visualization during the scan. Commonly used view-sharing techniques suffer from limited temporal resolution, and many of the more advanced reconstruction methods are either retrospective, time-consuming, or both. A Kalman filter model capable of real-time reconstruction can be used to increase the spatial and temporal resolution in dynamic MRI reconstruction. The original study describing the use of the Kalman filter in dynamic MRI was limited to non-Cartesian trajectories because of a limitation intrinsic to the dynamic model used in that study. Here the limitation is overcome, and the model is applied to the more commonly used Cartesian trajectory with fast reconstruction. Furthermore, a combination of the Kalman filter model with Cartesian parallel imaging is presented to further increase the spatial and temporal resolution and signal-to-noise ratio. Simulations and experiments were conducted to demonstrate that the Kalman filter model can increase the temporal resolution of the image series compared with view-sharing techniques and decrease the spatial aliasing compared with TGRAPPA. The method requires relatively little computation, and thus is suitable for real-time reconstruction.

  2. Digital Compositing Techniques for Coronal Imaging (Invited review)

    NASA Astrophysics Data System (ADS)

    Espenak, F.

    2000-04-01

    The solar corona exhibits a huge range in brightness which cannot be captured in any single photographic exposure. Short exposures show the bright inner corona and prominences, while long exposures reveal faint details in equatorial streamers and polar brushes. For many years, radial gradient filters and other analog techniques have been used to compress the corona's dynamic range in order to study its morphology. Such techniques demand perfect pointing and tracking during the eclipse, and can be difficult to calibrate. In the past decade, the speed, memory and hard disk capacity of personal computers have rapidly increased as prices continue to drop. It is now possible to perform sophisticated image processing of eclipse photographs on commercially available CPU's. Software programs such as Adobe Photoshop permit combining multiple eclipse photographs into a composite image which compresses the corona's dynamic range and can reveal subtle features and structures. Algorithms and digital techniques used for processing 1998 eclipse photographs will be discussed which are equally applicable to the recent eclipse of 1999 August 11.

  3. Virtual reality techniques for the visualization of biomedical imaging data

    NASA Astrophysics Data System (ADS)

    Shaw, Maurice A.; Spillman, William B., Jr.; Meissner, Ken E.; Gabbard, Joseph

    2001-07-01

    The Optical Sciences & Engineering Research Center (OSER) at Virginia Polytechnic and State University investigates advanced laser surgery optics, biocompatible material for implants, and diagnostic patches and other diagnostic and drug delivery tools. The Center employs optics to provide new biological research tools for visualization, measurement, analysis and manipulation. The Center's Research into Multispectral Medical Analysis and Visualization techniques will allow human and veterinary medical professionals to diagnose various conditions of the body in much the same way that satellite information is used to study earth resources. Each pixel in the image has an associated spectra. Advanced image analysis techniques are combined with cross-correlation of the spectra with signatures of known conditions, allowing automated diagnostic assistance to physicians. The analysis and visualization system consists of five components: data acquisition, data storage, data standardization, data analysis, and data visualization. OSER research efforts will be directed toward investigations of these system components as an integrated tool for next generation medical diagnostics. OSER will research critical data quality and data storage issues, mult-spectral sensor technologies, data analysis techniques, and diagnostic visualization systems including the VT-CAVE, (www.cave.vt.edu). The VT-CAVE is Virginia Tech's configuration of Fakespace Systems, Inc Virtual Reality system.

  4. Imaging of Hip Pain: From Radiography to Cross-Sectional Imaging Techniques

    PubMed Central

    Ruiz Santiago, Fernando; Santiago Chinchilla, Alicia; Ansari, Afshin; Guzmán Álvarez, Luis; Castellano García, Maria del Mar; Martínez Martínez, Alberto; Tercedor Sánchez, Juan

    2016-01-01

    Hip pain can have multiple causes, including intra-articular, juxta-articular, and referred pain, mainly from spine or sacroiliac joints. In this review, we discuss the causes of intra-articular hip pain from childhood to adulthood and the role of the appropriate imaging techniques according to clinical suspicion and age of the patient. Stress is put on the findings of radiographs, currently considered the first imaging technique, not only in older people with degenerative disease but also in young people without osteoarthritis. In this case plain radiography allows categorization of the hip as normal or dysplastic or with impingement signs, pincer, cam, or a combination of both. PMID:26885391

  5. Quantitative coronary angiography using image recovery techniques for background estimation in unsubtracted images

    SciTech Connect

    Wong, Jerry T.; Kamyar, Farzad; Molloi, Sabee

    2007-10-15

    Densitometry measurements have been performed previously using subtracted images. However, digital subtraction angiography (DSA) in coronary angiography is highly susceptible to misregistration artifacts due to the temporal separation of background and target images. Misregistration artifacts due to respiration and patient motion occur frequently, and organ motion is unavoidable. Quantitative densitometric techniques would be more clinically feasible if they could be implemented using unsubtracted images. The goal of this study is to evaluate image recovery techniques for densitometry measurements using unsubtracted images. A humanoid phantom and eight swine (25-35 kg) were used to evaluate the accuracy and precision of the following image recovery techniques: Local averaging (LA), morphological filtering (MF), linear interpolation (LI), and curvature-driven diffusion image inpainting (CDD). Images of iodinated vessel phantoms placed over the heart of the humanoid phantom or swine were acquired. In addition, coronary angiograms were obtained after power injections of a nonionic iodinated contrast solution in an in vivo swine study. Background signals were estimated and removed with LA, MF, LI, and CDD. Iodine masses in the vessel phantoms were quantified and compared to known amounts. Moreover, the total iodine in left anterior descending arteries was measured and compared with DSA measurements. In the humanoid phantom study, the average root mean square errors associated with quantifying iodine mass using LA and MF were approximately 6% and 9%, respectively. The corresponding average root mean square errors associated with quantifying iodine mass using LI and CDD were both approximately 3%. In the in vivo swine study, the root mean square errors associated with quantifying iodine in the vessel phantoms with LA and MF were approximately 5% and 12%, respectively. The corresponding average root mean square errors using LI and CDD were both 3%. The standard deviations

  6. Rodent models and imaging techniques to study liver regeneration.

    PubMed

    Wei, Weiwei; Dirsch, Olaf; Mclean, Anna Lawson; Zafarnia, Sara; Schwier, Michael; Dahmen, Uta

    2015-01-01

    The liver has the unique capability of regeneration from various injuries. Different animal models and in vitro methods are used for studying the processes and mechanisms of liver regeneration. Animal models were established either by administration of hepatotoxic chemicals or by surgical approach. The administration of hepatotoxic chemicals results in the death of liver cells and in subsequent hepatic regeneration and tissue repair. Surgery includes partial hepatectomy and portal vein occlusion or diversion: hepatectomy leads to compensatory regeneration of the remnant liver lobe, whereas portal vein occlusion leads to atrophy of the ipsilateral lobe and to compensatory regeneration of the contralateral lobe. Adaptation of modern radiological imaging technologies to the small size of rodents made the visualization of rodent intrahepatic vascular anatomy possible. Advanced knowledge of the detailed intrahepatic 3D anatomy enabled the establishment of refined surgical techniques. The same technology allows the visualization of hepatic vascular regeneration. The development of modern histological image analysis tools improved the quantitative assessment of hepatic regeneration. Novel image analysis tools enable us to quantify reliably and reproducibly the proliferative rate of hepatocytes using whole-slide scans, thus reducing the sampling error. In this review, the refined rodent models and the newly developed imaging technology to study liver regeneration are summarized. This summary helps to integrate the current knowledge of liver regeneration and promises an enormous increase in hepatological knowledge in the near future.

  7. Automated Coronal Loop Identification Using Digital Image Processing Techniques

    NASA Technical Reports Server (NTRS)

    Lee, Jong K.; Gary, G. Allen; Newman, Timothy S.

    2003-01-01

    The results of a master thesis project on a study of computer algorithms for automatic identification of optical-thin, 3-dimensional solar coronal loop centers from extreme ultraviolet and X-ray 2-dimensional images will be presented. These center splines are proxies of associated magnetic field lines. The project is pattern recognition problems in which there are no unique shapes or edges and in which photon and detector noise heavily influence the images. The study explores extraction techniques using: (1) linear feature recognition of local patterns (related to the inertia-tensor concept), (2) parametric space via the Hough transform, and (3) topological adaptive contours (snakes) that constrains curvature and continuity as possible candidates for digital loop detection schemes. We have developed synthesized images for the coronal loops to test the various loop identification algorithms. Since the topology of these solar features is dominated by the magnetic field structure, a first-order magnetic field approximation using multiple dipoles provides a priori information in the identification process. Results from both synthesized and solar images will be presented.

  8. Performance validation of phase diversity image reconstruction techniques

    NASA Astrophysics Data System (ADS)

    Hirzberger, J.; Feller, A.; Riethmüller, T. L.; Gandorfer, A.; Solanki, S. K.

    2011-05-01

    We present a performance study of a phase diversity (PD) image reconstruction algorithm based on artificial solar images obtained from MHD simulations and on seeing-free data obtained with the SuFI instrument on the Sunrise balloon borne observatory. The artificial data were altered by applying different levels of degradation with synthesised wavefront errors and noise. The PD algorithm was modified by changing the number of fitted polynomials, the shape of the pupil and the applied noise filter. The obtained reconstructions are evaluated by means of the resulting rms intensity contrast and by the conspicuousness of appearing artifacts. The results show that PD is a robust method which consistently recovers the initial unaffected image contents. The efficiency of the reconstruction is, however, strongly dependent on the number of used fitting polynomials and the noise level of the images. If the maximum number of fitted polynomials is higher than 21, artifacts have to be accepted and for noise levels higher than 10-3 the commonly used noise filtering techniques are not able to avoid amplification of spurious structures.

  9. Rodent models and imaging techniques to study liver regeneration.

    PubMed

    Wei, Weiwei; Dirsch, Olaf; Mclean, Anna Lawson; Zafarnia, Sara; Schwier, Michael; Dahmen, Uta

    2015-01-01

    The liver has the unique capability of regeneration from various injuries. Different animal models and in vitro methods are used for studying the processes and mechanisms of liver regeneration. Animal models were established either by administration of hepatotoxic chemicals or by surgical approach. The administration of hepatotoxic chemicals results in the death of liver cells and in subsequent hepatic regeneration and tissue repair. Surgery includes partial hepatectomy and portal vein occlusion or diversion: hepatectomy leads to compensatory regeneration of the remnant liver lobe, whereas portal vein occlusion leads to atrophy of the ipsilateral lobe and to compensatory regeneration of the contralateral lobe. Adaptation of modern radiological imaging technologies to the small size of rodents made the visualization of rodent intrahepatic vascular anatomy possible. Advanced knowledge of the detailed intrahepatic 3D anatomy enabled the establishment of refined surgical techniques. The same technology allows the visualization of hepatic vascular regeneration. The development of modern histological image analysis tools improved the quantitative assessment of hepatic regeneration. Novel image analysis tools enable us to quantify reliably and reproducibly the proliferative rate of hepatocytes using whole-slide scans, thus reducing the sampling error. In this review, the refined rodent models and the newly developed imaging technology to study liver regeneration are summarized. This summary helps to integrate the current knowledge of liver regeneration and promises an enormous increase in hepatological knowledge in the near future. PMID:25402256

  10. New calibration noise suppression techniques for the GLORIA limb imager

    NASA Astrophysics Data System (ADS)

    Guggenmoser, T.; Blank, J.; Kleinert, A.; Latzko, T.; Ungermann, J.; Friedl-Vallon, F.; Höpfner, M.; Kaufmann, M.; Kretschmer, E.; Maucher, G.; Neubert, T.; Oelhaf, H.; Preusse, P.; Riese, M.; Rongen, H.; Sha, M. K.; Sumińska-Ebersoldt, O.; Tan, V.

    2015-08-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) presents new opportunities for the retrieval of trace gases in the upper troposphere and lower stratosphere. The radiometric calibration of the measured signal is achieved using in-flight measurements of reference blackbody and upward-pointing "deep space" scenes. In this paper, we present techniques developed specifically to calibrate GLORIA data exploiting the instrument's imaging capability. The algorithms discussed here make use of the spatial correlation of parameters across GLORIA's detector pixels in order to mitigate the noise levels and artefacts in the calibration measurements. This is achieved by combining a priori and empirical knowledge about the instrument background radiation with noise-mitigating compression methods, specifically low-pass filtering and principal component analysis (PCA). In addition, a new software package for the processing of GLORIA data is introduced which allows us to generate calibrated spectra from raw measurements in a semi-automated data processing chain.

  11. The formation of liquid bridge in different operating modes of AFM

    NASA Astrophysics Data System (ADS)

    Wei, Zheng; Sun, Yan; Ding, WenXuan; Wang, ZaiRan

    2016-09-01

    The liquid bridge is one of the principal factors that cause artifacts in ambient-pressure atomic force microscope (AFM) images. Additionally, it is the main component of the adhesion force in ambient conditions. To understand the AFM imaging mechanism and the sample characteristics, it is essential to study the liquid bridge. This study interprets the physical mechanism involved in liquid bridge formation, which is composed of three different physical processes: the squeezing process, capillary condensation, and liquid film flow. We discuss the contributions of these three mechanisms to the volume and the capillary force of the liquid bridge in different AFM operation modes.

  12. Two-dimensional Imaging Velocity Interferometry: Technique and Data Analysis

    SciTech Connect

    Erskine, D J; Smith, R F; Bolme, C; Celliers, P; Collins, G

    2011-03-23

    We describe the data analysis procedures for an emerging interferometric technique for measuring motion across a two-dimensional image at a moment in time, i.e. a snapshot 2d-VISAR. Velocity interferometers (VISAR) measuring target motion to high precision have been an important diagnostic in shockwave physics for many years Until recently, this diagnostic has been limited to measuring motion at points or lines across a target. We introduce an emerging interferometric technique for measuring motion across a two-dimensional image, which could be called a snapshot 2d-VISAR. If a sufficiently fast movie camera technology existed, it could be placed behind a traditional VISAR optical system and record a 2d image vs time. But since that technology is not yet available, we use a CCD detector to record a single 2d image, with the pulsed nature of the illumination providing the time resolution. Consequently, since we are using pulsed illumination having a coherence length shorter than the VISAR interferometer delay ({approx}0.1 ns), we must use the white light velocimetry configuration to produce fringes with significant visibility. In this scheme, two interferometers (illuminating, detecting) having nearly identical delays are used in series, with one before the target and one after. This produces fringes with at most 50% visibility, but otherwise has the same fringe shift per target motion of a traditional VISAR. The 2d-VISAR observes a new world of information about shock behavior not readily accessible by traditional point or 1d-VISARS, simultaneously providing both a velocity map and an 'ordinary' snapshot photograph of the target. The 2d-VISAR has been used to observe nonuniformities in NIF related targets (polycrystalline diamond, Be), and in Si and Al.

  13. Spectral homogenization techniques for the hyperspectral image projector

    NASA Astrophysics Data System (ADS)

    Hillberry, Logan E.; Rice, Joseph P.

    2015-05-01

    In an effort to improve technology for performance testing and calibration of multispectral and hyperspectral imagers, the National Institute of Standards and Technology (NIST) has been developing a Hyperspectral Image Projector (HIP) capable of projecting dynamic scenes than include distinct, programmable spectra in each of its 1024x768 spatial pixels. The HIP is comprised of a spectral engine, which is a light source capable generating the spectra in the scene, coupled to a spatial engine, capable of projecting the spectra into the correct locations of the scene. In the prototype HIP, the light exiting the Visible-Near-Infrared (VNIR) / Short-Wavelength Infrared (SWIR) spectral engine is spectrally dispersed and needs to be spectrally homogenized before it enters the spatial engine. In this paper we describe the results from a study of several different techniques for performing this spectral homogenization. These techniques include an integrating sphere, a liquid light guide, a randomized fiber bundle, and an engineered diffuser, in various combinations. The spectral uniformity of projected HIP scenes is measured and analyzed using the spectral angle mapper (SAM) algorithm over the VNIR spectral range. The SAM provides a way to analyze the spectral uniformity independently from the radiometric uniformity. The goal of the homogenizer is a spectrally uniform and bright projected image. An integrating sphere provides the most spectrally uniform image, but at a great loss of light compared with the other methods. The randomized fiber bundle generally outperforms the liquid light guide in both spectral homogenization and brightness. Using an engineered diffuser with the randomized fiber bundle increases the spectral uniformity by a factor of five, with a decrease in brightness by a factor of five, compared with the randomized fiber bundle alone. The combination of an engineered diffuser with a randomized fiber bundle provides comparable spectral uniformity to the

  14. The use of optical imaging techniques in the gastrointestinal tract

    PubMed Central

    Beg, Sabina; Wilson, Ana; Ragunath, Krish

    2016-01-01

    With significant advances in the management of gastrointestinal disease there has been a move from diagnosing advanced pathology, to detecting early lesions that are potentially amenable to curative endoscopic treatment. This has required an improvement in diagnostics, with a focus on identifying and characterising subtle mucosal changes. There is great interest in the use of optical technologies to predict histology and enable the formulation of a real-time in vivo diagnosis, a so-called ‘optical biopsy’. The aim of this review is to explore the evidence for the use of the current commercially available imaging techniques in the gastrointestinal tract. PMID:27429735

  15. [Diagnostic imaging techniques for hepatic metastases from colorectal cancer].

    PubMed

    Mollerup, Talie Khadem; Lorentzen, Torben; Møller, Jakob M; Nørgaard, Henrik; Achiam, Michael P

    2015-07-27

    Hepatic metastases (HM) are amongst the most important prognostic factors in patient survival from colorectal cancer. The diagnostic imaging techniques for accurate detection and characterization of colorectal metastases are therefore vital. In a review of the literature, MRI showed the highest sensitivity for detection of HM lesions < 1 cm, but the amount of MR scanners is insufficient. Contrast-enhanced ultrasound and computed tomography have similar sensitivity for detection of HM, but each method also have limitation such as operator dependency or enhanced risk of cancer due to ionizing radiation. PMID:26238008

  16. Application of image processing techniques to fluid flow data analysis

    NASA Technical Reports Server (NTRS)

    Giamati, C. C.

    1981-01-01

    The application of color coding techniques used in processing remote sensing imagery to analyze and display fluid flow data is discussed. A minicomputer based color film recording and color CRT display system is described. High quality, high resolution images of two-dimensional data are produced on the film recorder. Three dimensional data, in large volume, are used to generate color motion pictures in which time is used to represent the third dimension. Several applications and examples are presented. System hardware and software is described.

  17. Fast Multigrid Techniques in Total Variation-Based Image Reconstruction

    NASA Technical Reports Server (NTRS)

    Oman, Mary Ellen

    1996-01-01

    Existing multigrid techniques are used to effect an efficient method for reconstructing an image from noisy, blurred data. Total Variation minimization yields a nonlinear integro-differential equation which, when discretized using cell-centered finite differences, yields a full matrix equation. A fixed point iteration is applied with the intermediate matrix equations solved via a preconditioned conjugate gradient method which utilizes multi-level quadrature (due to Brandt and Lubrecht) to apply the integral operator and a multigrid scheme (due to Ewing and Shen) to invert the differential operator. With effective preconditioning, the method presented seems to require Omicron(n) operations. Numerical results are given for a two-dimensional example.

  18. Adaptive near-field beamforming techniques for sound source imaging.

    PubMed

    Cho, Yong Thung; Roan, Michael J

    2009-02-01

    Phased array signal processing techniques such as beamforming have a long history in applications such as sonar for detection and localization of far-field sound sources. Two sometimes competing challenges arise in any type of spatial processing; these are to minimize contributions from directions other than the look direction and minimize the width of the main lobe. To tackle this problem a large body of work has been devoted to the development of adaptive procedures that attempt to minimize side lobe contributions to the spatial processor output. In this paper, two adaptive beamforming procedures-minimum variance distorsionless response and weight optimization to minimize maximum side lobes--are modified for use in source visualization applications to estimate beamforming pressure and intensity using near-field pressure measurements. These adaptive techniques are compared to a fixed near-field focusing technique (both techniques use near-field beamforming weightings focusing at source locations estimated based on spherical wave array manifold vectors with spatial windows). Sound source resolution accuracies of near-field imaging procedures with different weighting strategies are compared using numerical simulations both in anechoic and reverberant environments with random measurement noise. Also, experimental results are given for near-field sound pressure measurements of an enclosed loudspeaker.

  19. Imaging Techniques for Clinical Burn Assessment with a Focus on Multispectral Imaging

    PubMed Central

    Thatcher, Jeffrey E.; Squiers, John J.; Kanick, Stephen C.; King, Darlene R.; Lu, Yang; Wang, Yulin; Mohan, Rachit; Sellke, Eric W.; DiMaio, J. Michael

    2016-01-01

    Significance: Burn assessments, including extent and severity, are some of the most critical diagnoses in burn care, and many recently developed imaging techniques may have the potential to improve the accuracy of these evaluations. Recent Advances: Optical devices, telemedicine, and high-frequency ultrasound are among the highlights in recent burn imaging advancements. We present another promising technology, multispectral imaging (MSI), which also has the potential to impact current medical practice in burn care, among a variety of other specialties. Critical Issues: At this time, it is still a matter of debate as to why there is no consensus on the use of technology to assist burn assessments in the United States. Fortunately, the availability of techniques does not appear to be a limitation. However, the selection of appropriate imaging technology to augment the provision of burn care can be difficult for clinicians to navigate. There are many technologies available, but a comprehensive review summarizing the tissue characteristics measured by each technology in light of aiding clinicians in selecting the proper device is missing. This would be especially valuable for the nonburn specialists who encounter burn injuries. Future Directions: The questions of when burn assessment devices are useful to the burn team, how the various imaging devices work, and where the various burn imaging technologies fit into the spectrum of burn care will continue to be addressed. Technologies that can image a large surface area quickly, such as thermography or laser speckle imaging, may be suitable for initial burn assessment and triage. In the setting of presurgical planning, ultrasound or optical microscopy techniques, including optical coherence tomography, may prove useful. MSI, which actually has origins in burn care, may ultimately meet a high number of requirements for burn assessment in routine clinical use. PMID:27602255

  20. Imaging Techniques for Clinical Burn Assessment with a Focus on Multispectral Imaging

    PubMed Central

    Thatcher, Jeffrey E.; Squiers, John J.; Kanick, Stephen C.; King, Darlene R.; Lu, Yang; Wang, Yulin; Mohan, Rachit; Sellke, Eric W.; DiMaio, J. Michael

    2016-01-01

    Significance: Burn assessments, including extent and severity, are some of the most critical diagnoses in burn care, and many recently developed imaging techniques may have the potential to improve the accuracy of these evaluations. Recent Advances: Optical devices, telemedicine, and high-frequency ultrasound are among the highlights in recent burn imaging advancements. We present another promising technology, multispectral imaging (MSI), which also has the potential to impact current medical practice in burn care, among a variety of other specialties. Critical Issues: At this time, it is still a matter of debate as to why there is no consensus on the use of technology to assist burn assessments in the United States. Fortunately, the availability of techniques does not appear to be a limitation. However, the selection of appropriate imaging technology to augment the provision of burn care can be difficult for clinicians to navigate. There are many technologies available, but a comprehensive review summarizing the tissue characteristics measured by each technology in light of aiding clinicians in selecting the proper device is missing. This would be especially valuable for the nonburn specialists who encounter burn injuries. Future Directions: The questions of when burn assessment devices are useful to the burn team, how the various imaging devices work, and where the various burn imaging technologies fit into the spectrum of burn care will continue to be addressed. Technologies that can image a large surface area quickly, such as thermography or laser speckle imaging, may be suitable for initial burn assessment and triage. In the setting of presurgical planning, ultrasound or optical microscopy techniques, including optical coherence tomography, may prove useful. MSI, which actually has origins in burn care, may ultimately meet a high number of requirements for burn assessment in routine clinical use.

  1. PREFACE: NC-AFM 2004: Proceedings of the 7th International Conference on Non-contact Atomic Force Microscopy

    NASA Astrophysics Data System (ADS)

    Schwarz, Udo

    2005-03-01

    With the ongoing miniaturization of devices and controlled nanostructuring of materials, the importance of atomic-scale information on surfaces and surface properties is growing continuously. The astonishing progress in nanoscience and nanotechnology that took place during the last two decades was in many ways related to recent progress in high-resolution imaging techniques such as scanning tunnelling microscopy and transmission electron microscopy. Since the mid-1990s, non-contact atomic force microscopy (NC-AFM) performed in ultrahigh vacuum has evolved as an alternative technique that achieves atomic resolution, but without the restriction to conducting surfaces of the previously established techniques. Advances of the rapidly developing field of NC-AFM are discussed at annual conferences as part of a series that started in 1998 in Osaka, Japan. This special issue of Nanotechnology is a compilation of original work presented at the 7th International Conference on Non-contact Atomic Force Microscopy that took place in Seattle, USA, 12-15 September 2004. Over the years, the conference grew in size and scope. Atomic resolution imaging of oxides and semiconductors remains an issue. Noticeable new developments have been presented in this regard such as, e.g., the demonstrated ability to manipulate individual atoms. Additionally, the investigation of individual molecules, clusters, and organic materials gains more and more attention. In this context, considerable effort is undertaken to transfer the NC-AFM principle based on frequency modulation to applications in air and liquids with the goal of enabling high-resolution surface studies of biological material in native environments, as well as to reduce the experimental complexity, which so far involves the availability of (costly) vacuum systems. Force spectroscopy methods continue to be improved and are applied to topics such as the imaging of the three-dimensional force field as a function of the distance with

  2. Advanced imaging techniques II: using a compound microscope for photographing point-mount specimens

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Digital imaging technology has revolutionized the practice photographing insects for scientific study. Herein described are lighting and mounting techniques designed for imaging micro Hymenoptera. Techniques described here are applicable to all small insects, as well as other invertebrates. The ke...

  3. Oxide nanocrystal based nanocomposites for fabricating photoplastic AFM probes

    NASA Astrophysics Data System (ADS)

    Ingrosso, Chiara; Martin-Olmos, Cristina; Llobera, Andreu; Innocenti, Claudia; Sangregorio, Claudio; Striccoli, Marinella; Agostiano, Angela; Voigt, Anja; Gruetzner, Gabi; Brugger, Jürgen; Perez-Murano, Francesc; Curri, Maria Lucia

    2011-11-01

    We report on the synthesis, characterization and application of a novel nanocomposite made of a negative tone epoxy based photoresist modified with organic-capped Fe2O3 nanocrystals (NCs). The mechanical properties of the nanocomposite drastically improve upon incorporation of a suitable concentration of NCs in the polymer, without deteriorating its photolithography performance. High aspect ratio 3D microstructures made of the nanocomposite have been fabricated with a uniform surface morphology and with a resolution down to few micrometres. The embedded organic-capped Fe2O3 NCs drastically increase the stiffness and hardness of the epoxy based photoresist matrix, making the final material extremely interesting for manufacturing miniaturized polymer based mechanical devices and systems. In particular, the nanocomposite has been used as structural material for fabricating photoplastic Atomic Force Microscopy (AFM) probes with integrated tips showing outstanding mechanical response and high resolution imaging performance. The fabricated probes consist of straight cantilevers with low stress-gradient and high quality factors, incorporating sharp polymeric tips. They present considerably improved performance compared to pure epoxy based photoresist AFM probes, and to commercial silicon AFM probes.We report on the synthesis, characterization and application of a novel nanocomposite made of a negative tone epoxy based photoresist modified with organic-capped Fe2O3 nanocrystals (NCs). The mechanical properties of the nanocomposite drastically improve upon incorporation of a suitable concentration of NCs in the polymer, without deteriorating its photolithography performance. High aspect ratio 3D microstructures made of the nanocomposite have been fabricated with a uniform surface morphology and with a resolution down to few micrometres. The embedded organic-capped Fe2O3 NCs drastically increase the stiffness and hardness of the epoxy based photoresist matrix, making the

  4. Bioluminescence-based imaging technique for pressure measurement in water

    NASA Astrophysics Data System (ADS)

    Watanabe, Yasunori; Tanaka, Yasufumi

    2011-07-01

    The dinoflagellate Pyrocystis lunula emits light in response to water motion. We developed a new imaging technique for measuring pressure using plankton that emits light in response to mechanical stimulation. The bioluminescence emitted by P. lunula was used to measure impact water pressure produced using weight-drop tests. The maximum mean luminescence intensity correlated with the maximum impact pressure that the cells receive when the circadian and diurnal biological rhythms are appropriately controlled. Thus, with appropriate calibration of experimentally determined parameters, the dynamic impact pressure can be estimated by measuring the cell-flash distribution. Statistical features of the evolution of flash intensity and the probability distribution during the impacting event, which are described by both biological and mechanical response parameters, are also discussed in this paper. The practical applicability of this bioluminescence imaging technique is examined through a water drop test. The maximum dynamic pressure, occurring at the impact of a water jet against a wall, was estimated from the flash intensity of the dinoflagellate.

  5. Optical Fourier techniques for medical image processing and phase contrast imaging

    PubMed Central

    Yelleswarapu, Chandra S.; Kothapalli, Sri-Rajasekhar; Rao, D.V.G.L.N.

    2008-01-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy. PMID:18458764

  6. New endoscopic imaging techniques in surveillance of inflammatory bowel disease

    PubMed Central

    Gabbani, Tommaso; Manetti, Natalia; Bonanomi, Andrea Giovanni; Annese, Antonio Luca; Annese, Vito

    2015-01-01

    Endoscopy plays a crucial role in the management of inflammatory bowel disease (IBD). Advances imaging techniques allow visualization of mucosal details, tissue characteristics and cellular alteration. In particular chromoendoscopy, magnification endoscopy, confocal laser endomicroscopy and endocytoscopy seem to have the possibility to radically modify the approach to surveillance and decision making. Dye-based chromoendoscopy (DBC) and magnification chromoendoscopy improve detection of dysplasia, and evaluation of inflammatory activity and extension of ulcerative colitis and are thus considered the standard of care. Dye-less chromoendoscopy could probably replace conventional DBC for surveillance. Narrow band imaging and i-scan have shown to improve activity and extent assessment in comparison to white-light endoscopy. Confocal laser endomicroscopy (CLE) can detect more dysplastic lesions in surveillance colonoscopy and predict neoplastic and inflammatory changes with high accuracy compared to histology. This technology is best used in conjunction with chromoendoscopy, narrow-band imaging, or autofluorescence because of its minute scanning area. This combination is useful for appropriate tissue classification of mucosal lesions already detected by standard or optically enhanced endoscopy. The best combination for IBD surveillance appear to be chromoendoscopy for identification of areas of suspicion, with further examination with CLE to detect intraepithelial neoplasia. However cost, availability, and experience are still an issue. PMID:25789093

  7. Fast and Computationally Efficient Boundary Detection Technique for Medical Images

    NASA Astrophysics Data System (ADS)

    Das, Arpita; Goswami, Partha; Sen, Susanta

    2011-03-01

    Detection of edge is a fundamental procedure of image processing. Many edge detection algorithms have been developed based on computation of the intensity gradient. In medical images, boundaries of the objects are vague for gradual change of intensities. Therefore need exists to develop a computationally efficient and accurate edge detection approach. We have presented such algorithm using modified global threshold technique. In our work, the boundaries are highlighted from the background by selecting a threshold (T) that separates object and background. In the image, where object to background or vice-verse transition occurs, pixel intensity either rises greater or equal to T (background to object transition) or falls less than T (object to background). We have marked these transition regions as object boundary and enhanced the corresponding intensity. The value of T may be specified heuristically or by following specific algorithm. Conventional global threshold algorithm computes the value of T automatically. But this approach is not computationally efficient and required a large memory. In this study, we have proposed a parameter for which computation of T is very easy and fast. We have also proved that a fixed size memory [ 256 × 4 Byte] is enough to compute this algorithm.

  8. Optimisation techniques for digital image reconstruction from their projections

    NASA Astrophysics Data System (ADS)

    Durrani, T. S.; Goutis, C. E.

    1980-09-01

    A method is proposed for the digital reconstruction of images from their projections based on optimizing specified performance criteria. The reconstruction problem is embedded into the framework of constrained optimization and its solution is shown to lead to a relationship between the image and the one-dimensional Lagrange functions associated with each cost criterion. Two types of geometries (the parallel-beam and fan-beam systems) are considered for the acquisition of projection data and the constrained-optimization problem is solved for both. The ensuing algorithms allow the reconstruction of multidimensional objects from one-dimensional functions only. For digital data a fast reconstruction algorithm is proposed which exploits the symmetries inherent in both a circular domain of image reconstruction and in projections obtained at equispaced angles. Computational complexity is significantly reduced by the use of fast-Fourier-transform techniques, as the underlying relationship between the available projection data and the associated Lagrange multipliers is shown to possess a block circulant matrix structure.

  9. Visual computation of egomotion using an image interpolation technique.

    PubMed

    Chahl, J S; Srinivasan, M V

    1996-05-01

    A novel technique is presented for the computation of the parameters of egomotion of a mobile device, such as a robot or a mechanical arm, equipped with two visual sensors. Each sensor captures a panoramic view of the environment. We show the parameters of ego-motion can be computed by interpolating the position of the image captured by one of the sensors at the robot's present location, with respect to the images captured by the two sensors at the robot's previous location. The algorithm delivers the distance travelled and angle rotated, without the explicit measurement or integration of velocity fields. The result is obtained in a single step, without any iteration or successive approximation. Tests of the algorithm on real and synthetic images reveal an accuracy to within 5% of the actual motion. Implementation of the algorithm on a mobile robot reveals that stepwise rotation and translation can be measured to within 10% accuracy in a three-dimensional world of unknown structure. The position and orientation of the robot at the end of a 30-step trajectory can be estimated with accuracies of 5% and 5 degrees, respectively.

  10. Visual computation of egomotion using an image interpolation technique.

    PubMed

    Chahl, J S; Srinivasan, M V

    1996-05-01

    A novel technique is presented for the computation of the parameters of egomotion of a mobile device, such as a robot or a mechanical arm, equipped with two visual sensors. Each sensor captures a panoramic view of the environment. We show the parameters of ego-motion can be computed by interpolating the position of the image captured by one of the sensors at the robot's present location, with respect to the images captured by the two sensors at the robot's previous location. The algorithm delivers the distance travelled and angle rotated, without the explicit measurement or integration of velocity fields. The result is obtained in a single step, without any iteration or successive approximation. Tests of the algorithm on real and synthetic images reveal an accuracy to within 5% of the actual motion. Implementation of the algorithm on a mobile robot reveals that stepwise rotation and translation can be measured to within 10% accuracy in a three-dimensional world of unknown structure. The position and orientation of the robot at the end of a 30-step trajectory can be estimated with accuracies of 5% and 5 degrees, respectively. PMID:8991456

  11. Real-time windowing in imaging radar using FPGA technique

    NASA Astrophysics Data System (ADS)

    Ponomaryov, Volodymyr I.; Escamilla-Hernandez, Enrique

    2005-02-01

    The imaging radar uses the high frequency electromagnetic waves reflected from different objects for estimating of its parameters. Pulse compression is a standard signal processing technique used to minimize the peak transmission power and to maximize SNR, and to get a better resolution. Usually the pulse compression can be achieved using a matched filter. The level of the side-lobes in the imaging radar can be reduced using the special weighting function processing. There are very known different weighting functions: Hamming, Hanning, Blackman, Chebyshev, Blackman-Harris, Kaiser-Bessel, etc., widely used in the signal processing applications. Field Programmable Gate Arrays (FPGAs) offers great benefits like instantaneous implementation, dynamic reconfiguration, design, and field programmability. This reconfiguration makes FPGAs a better solution over custom-made integrated circuits. This work aims at demonstrating a reasonably flexible implementation of FM-linear signal and pulse compression using Matlab, Simulink, and System Generator. Employing FPGA and mentioned software we have proposed the pulse compression design on FPGA using classical and novel windows technique to reduce the side-lobes level. This permits increasing the detection ability of the small or nearly placed targets in imaging radar. The advantage of FPGA that can do parallelism in real time processing permits to realize the proposed algorithms. The paper also presents the experimental results of proposed windowing procedure in the marine radar with such the parameters: signal is linear FM (Chirp); frequency deviation DF is 9.375MHz; the pulse width T is 3.2μs taps number in the matched filter is 800 taps; sampling frequency 253.125*106 MHz. It has been realized the reducing of side-lobes levels in real time permitting better resolution of the small targets.

  12. An investigation of the seismoelectric beamforming imaging technique

    NASA Astrophysics Data System (ADS)

    El Khoury, Paul

    The electrical current density generated by the propagation of a seismic wave at the interface characterized by a drop in the electrical conductivity and/or the permeability produces an electrical field of electrokinetic nature that can be measured remotely with a signal-to-noise ratio depending on the background noise and signal attenuation. The seismoelectric beamforming approach is a new imaging technique based on scanning porous media using appropriately delayed in time seismic sources to focus the hydromechanical energy on a regular grid and measure the associated electric field remotely. This method can be used to image heterogeneities in high definition and provide additional information to classical geophysical methods such as structural data to electric resistivity tomography. In this thesis, I present the seismoelectric constitutive equations / theory and I numerically simulate, using the poroacoustic approximation, a laboratory tank experiment to investigate the resolution of the seismoelectric beamforming approach. The two-dimensional model consists of a water-filled bucket in which a cylindrical sandstone core sample is set up vertically crossing the water column. The hydrophones/seismic sources are located on a 50 cm diameter circle in the bucket and the seismic energy is focused on the grid in order to scan the medium and determine the geometry of the porous plug using the output electric potential image. Next, I conduct a series of numerical tests to explore the sensitivity of the seismoelectric beamforming approach to the wavelength (frequency) of the seismic wave and to see the impact of a wrong velocity model. Finally, I summarize my laboratory experiments and techniques applied and I provide recommendations for future seismoelectric experiments.

  13. Dual-energy imaging of the chest: Optimization of image acquisition techniques for the 'bone-only' image

    SciTech Connect

    Shkumat, N. A.; Siewerdsen, J. H.; Richard, S.; Paul, N. S.; Yorkston, J.; Van Metter, R.

    2008-02-15

    Experiments were conducted to determine optimal acquisition techniques for bone image decompositions for a prototype dual-energy (DE) imaging system. Technique parameters included kVp pair (denoted [kVp{sup L}/kVp{sup H}]) and dose allocation (the proportion of dose in low- and high-energy projections), each optimized to provide maximum signal difference-to-noise ratio in DE images. Experiments involved a chest phantom representing an average patient size and containing simulated ribs and lung nodules. Low- and high-energy kVp were varied from 60-90 and 120-150 kVp, respectively. The optimal kVp pair was determined to be [60/130] kVp, with image quality showing a strong dependence on low-kVp selection. Optimal dose allocation was approximately 0.5--i.e., an equal dose imparted by the low- and high-energy projections. The results complement earlier studies of optimal DE soft-tissue image acquisition, with differences attributed to the specific imaging task. Together, the results help to guide the development and implementation of high-performance DE imaging systems, with applications including lung nodule detection and diagnosis, pneumothorax identification, and musculoskeletal imaging (e.g., discrimination of rib fractures from metastasis)

  14. Microhardness, chemical etching, SEM, AFM and SHG studies of novel nonlinear optical crystal -L-threonine formate

    SciTech Connect

    Hanumantha Rao, Redrothu; Kalainathan, S.

    2012-04-15

    Highlights: Black-Right-Pointing-Pointer Microhardness studies of novel LTF crystal reported first time in the literature. Black-Right-Pointing-Pointer Surface studies are done by AFM, chemical etching and SEM. Black-Right-Pointing-Pointer From SHG studies, it is known that LTF is potential NLO crystal. -- Abstract: The crystal L-threonine formate, an organic NLO crystal was synthesized from aqueous solution by slow evaporation technique. The grown crystal surface has been analyzed by scanning electron microscopy (SEM), chemical etching and atomic force microscopy (AFM). SEM analysis reveals pyramidal shaped minute crystallites on the growth surface. The etching study indicates the occurrence of etch pit patterns like striations and step like pattern. The mechanical properties of LTF crystals were evaluated by mechanical testing which reveals certain mechanical characteristics like elastic stiffness constant (C{sub 11}) and young's modulus (E). The Vickers and Knoop microhardness studies have been carried out on LTF crystals over a range of 10-50 g. Hardness anisotropy has been observed in accordance with the orientation of the crystal. AFM image shows major hillock on growth surface. The second harmonic generation (SHG) efficiency has been tested by the Kurtz powder technique using Nd:YAG laser and found to be about 1.21 times in comparison with standard potassium dihydrogen phosphate (KDP) crystals.

  15. Advances in high-resolution imagingtechniques for three-dimensional imaging of cellular structures

    PubMed Central

    Lidke, Diane S.; Lidke, Keith A.

    2012-01-01

    A fundamental goal in biology is to determine how cellular organization is coupled to function. To achieve this goal, a better understanding of organelle composition and structure is needed. Although visualization of cellular organelles using fluorescence or electron microscopy (EM) has become a common tool for the cell biologist, recent advances are providing a clearer picture of the cell than ever before. In particular, advanced light-microscopy techniques are achieving resolutions below the diffraction limit and EM tomography provides high-resolution three-dimensional (3D) images of cellular structures. The ability to perform both fluorescence and electron microscopy on the same sample (correlative light and electron microscopy, CLEM) makes it possible to identify where a fluorescently labeled protein is located with respect to organelle structures visualized by EM. Here, we review the current state of the art in 3D biological imaging techniques with a focus on recent advances in electron microscopy and fluorescence super-resolution techniques. PMID:22685332

  16. Conductive-probe AFM characterization of graphene sheets bonded to gold surfaces

    NASA Astrophysics Data System (ADS)

    Hauquier, Fanny; Alamarguy, David; Viel, Pascal; Noël, Sophie; Filoramo, Arianna; Huc, Vincent; Houzé, Frédéric; Palacin, Serge

    2012-01-01

    Conducting probe atomic force microscopy (CP-AFM) has been used to perform mechanical and electrical experiments on graphene layers bonded to polyaminophenylene (PAP) films grafted on gold substrates. This technique is a new approach for the characterization of graphene sheets and represents a complementary tool to Raman spectroscopy. The combination of friction and electrical imaging reveals that different stacked graphene sheets have been successfully distinguished from each other and from the underlying PAP films. Lateral force microscopy has shown that the friction is greatly reduced on graphene sheets in comparison with the organic coating. The electrical resistance images show very different local conduction properties which can be linked to the number of underlying graphene sheets. The resistance decreases very slowly when the normal load increases. Current-voltage curves display characteristics of metal-molecule-metal junctions.

  17. Recent developments at JPL in the application of digital image processing techniques to astronomical images

    NASA Technical Reports Server (NTRS)

    Lorre, J. J.; Lynn, D. J.; Benton, W. D.

    1976-01-01

    Several techniques of a digital image-processing nature are illustrated which have proved useful in visual analysis of astronomical pictorial data. Processed digital scans of photographic plates of Stephans Quintet and NGC 4151 are used as examples to show how faint nebulosity is enhanced by high-pass filtering, how foreground stars are suppressed by linear interpolation, and how relative color differences between two images recorded on plates with different spectral sensitivities can be revealed by generating ratio images. Analyses are outlined which are intended to compensate partially for the blurring effects of the atmosphere on images of Stephans Quintet and to obtain more detailed information about Saturn's ring structure from low- and high-resolution scans of the planet and its ring system. The employment of a correlation picture to determine the tilt angle of an average spectral line in a low-quality spectrum is demonstrated for a section of the spectrum of Uranus.

  18. Airborne Laser Scanning and Image Processing Techniques for Archaeological Prospection

    NASA Astrophysics Data System (ADS)

    Faltýnová, M.; Nový, P.

    2014-06-01

    Aerial photography was, for decades, an invaluable tool for archaeological prospection, in spite of the limitation of this method to deforested areas. The airborne laser scanning (ALS) method can be nowadays used to map complex areas and suitable complement earlier findings. This article describes visualization and image processing methods that can be applied on digital terrain models (DTMs) to highlight objects hidden in the landscape. Thanks to the analysis of visualized DTM it is possible to understand the landscape evolution including the differentiation between natural processes and human interventions. Different visualization methods were applied on a case study area. A system of parallel tracks hidden in a forest and its surroundings - part of old route called "Devil's Furrow" near the town of Sázava was chosen. The whole area around well known part of Devil's Furrow has not been prospected systematically yet. The data from the airborne laser scanning acquired by the Czech Office for Surveying, Mapping and Cadastre was used. The average density of the point cloud was approximately 1 point/m2 The goal of the project was to visualize the utmost smallest terrain discontinuities, e.g. tracks and erosion furrows, which some were not wholly preserved. Generally we were interested in objects that are clearly not visible in DTMs displayed in the form of shaded relief. Some of the typical visualization methods were tested (shaded relief, aspect and slope image). To get better results we applied image-processing methods that were successfully used on aerial photographs or hyperspectral images in the past. The usage of different visualization techniques on one site allowed us to verify the natural character of the southern part of Devil's Furrow and find formations up to now hidden in the forests.

  19. Hyperspectral imaging technique for determination of pork freshness attributes

    NASA Astrophysics Data System (ADS)

    Li, Yongyu; Zhang, Leilei; Peng, Yankun; Tang, Xiuying; Chao, Kuanglin; Dhakal, Sagar

    2011-06-01

    Freshness of pork is an important quality attribute, which can vary greatly in storage and logistics. The specific objectives of this research were to develop a hyperspectral imaging system to predict pork freshness based on quality attributes such as total volatile basic-nitrogen (TVB-N), pH value and color parameters (L*,a*,b*). Pork samples were packed in seal plastic bags and then stored at 4°C. Every 12 hours. Hyperspectral scattering images were collected from the pork surface at the range of 400 nm to 1100 nm. Two different methods were performed to extract scattering feature spectra from the hyperspectral scattering images. First, the spectral scattering profiles at individual wavelengths were fitted accurately by a three-parameter Lorentzian distribution (LD) function; second, reflectance spectra were extracted from the scattering images. Partial Least Square Regression (PLSR) method was used to establish prediction models to predict pork freshness. The results showed that the PLSR models based on reflectance spectra was better than combinations of LD "parameter spectra" in prediction of TVB-N with a correlation coefficient (r) = 0.90, a standard error of prediction (SEP) = 7.80 mg/100g. Moreover, a prediction model for pork freshness was established by using a combination of TVB-N, pH and color parameters. It could give a good prediction results with r = 0.91 for pork freshness. The research demonstrated that hyperspectral scattering technique is a valid tool for real-time and nondestructive detection of pork freshness.

  20. Nano-Wilhelmy investigation of dynamic wetting properties of AFM tips through tip-nanobubble interaction

    NASA Astrophysics Data System (ADS)

    Wang, Yuliang; Wang, Huimin; Bi, Shusheng; Guo, Bin

    2016-07-01

    The dynamic wetting properties of atomic force microscopy (AFM) tips are of much concern in many AFM-related measurement, fabrication, and manipulation applications. In this study, the wetting properties of silicon and silicon nitride AFM tips are investigated through dynamic contact angle measurement using a nano-Wilhelmy balance based method. This is done by capillary force measurement during extension and retraction motion of AFM tips relative to interfacial nanobubbles. The working principle of the proposed method and mathematic models for dynamic contact angle measurement are presented. Geometric models of AFM tips were constructed using scanning electronic microscopy (SEM) images taken from different view directions. The detailed process of tip-nanobubble interaction was investigated using force-distance curves of AFM on nanobubbles. Several parameters including nanobubble height, adhesion and capillary force between tip and nanobubbles are extracted. The variation of these parameters was studied over nanobubble surfaces. The dynamic contact angles of the AFM tips were calculated from the capillary force measurements. The proposed method provides direct measurement of dynamic contact angles for AFM tips and can also be taken as a general approach for nanoscale dynamic wetting property investigation.

  1. Nano-Wilhelmy investigation of dynamic wetting properties of AFM tips through tip-nanobubble interaction

    PubMed Central

    Wang, Yuliang; Wang, Huimin; Bi, Shusheng; Guo, Bin

    2016-01-01

    The dynamic wetting properties of atomic force microscopy (AFM) tips are of much concern in many AFM-related measurement, fabrication, and manipulation applications. In this study, the wetting properties of silicon and silicon nitride AFM tips are investigated through dynamic contact angle measurement using a nano-Wilhelmy balance based method. This is done by capillary force measurement during extension and retraction motion of AFM tips relative to interfacial nanobubbles. The working principle of the proposed method and mathematic models for dynamic contact angle measurement are presented. Geometric models of AFM tips were constructed using scanning electronic microscopy (SEM) images taken from different view directions. The detailed process of tip-nanobubble interaction was investigated using force-distance curves of AFM on nanobubbles. Several parameters including nanobubble height, adhesion and capillary force between tip and nanobubbles are extracted. The variation of these parameters was studied over nanobubble surfaces. The dynamic contact angles of the AFM tips were calculated from the capillary force measurements. The proposed method provides direct measurement of dynamic contact angles for AFM tips and can also be taken as a general approach for nanoscale dynamic wetting property investigation. PMID:27452115

  2. Application of Advanced Magnetic Resonance Imaging Techniques in Evaluation of the Lower Extremity

    PubMed Central

    Braun, Hillary J.; Dragoo, Jason L.; Hargreaves, Brian A.; Levenston, Marc E.; Gold, Garry E.

    2012-01-01

    Synopsis This article reviews current magnetic resonance imaging techniques for imaging the lower extremity, focusing on imaging of the knee, ankle, and hip joints. Recent advancements in MRI include imaging at 7 Tesla, using multiple receiver channels, T2* imaging, and metal suppression techniques, allowing more detailed visualization of complex anatomy, evaluation of morphological changes within articular cartilage, and imaging around orthopedic hardware. PMID:23622097

  3. Colour image segmentation using unsupervised clustering technique for acute leukemia images

    NASA Astrophysics Data System (ADS)

    Halim, N. H. Abd; Mashor, M. Y.; Nasir, A. S. Abdul; Mustafa, N.; Hassan, R.

    2015-05-01

    Colour image segmentation has becoming more popular for computer vision due to its important process in most medical analysis tasks. This paper proposes comparison between different colour components of RGB(red, green, blue) and HSI (hue, saturation, intensity) colour models that will be used in order to segment the acute leukemia images. First, partial contrast stretching is applied on leukemia images to increase the visual aspect of the blast cells. Then, an unsupervised moving k-means clustering algorithm is applied on the various colour components of RGB and HSI colour models for the purpose of segmentation of blast cells from the red blood cells and background regions in leukemia image. Different colour components of RGB and HSI colour models have been analyzed in order to identify the colour component that can give the good segmentation performance. The segmented images are then processed using median filter and region growing technique to reduce noise and smooth the images. The results show that segmentation using saturation component of HSI colour model has proven to be the best in segmenting nucleus of the blast cells in acute leukemia image as compared to the other colour components of RGB and HSI colour models.

  4. Characterization of fiber composite flywheels by ultrasonic imaging techniques

    SciTech Connect

    Tsao, M.C.; Grills, R.H.; Andrew, G.A.; Coppa, A.P.

    1983-01-01

    A set of flywheels of different fiber composites has been investigated ultrasonically by an ULTRA IMAGE III System developed by General Dynamics. The 40 cm (16 in.) in diameter and 4.3 cm (1.7 in.) thick flywheels have been studied in an immersion test with a 2.5 cm (1 in.) diameter, 1.5 MHz, conically focused transducer. By monitoring the amplitude of the back surface signals from the wheels and displaying the amplitude variations with different color bands, the internal structures of the wheels such as the fiber orientations and bonding distributions can be examined in detail. The baseline information concerning the integrity of these prototype flywheels, relative to different manufacturing processes, with and without ring shrink fit, has been recorded. This paper describes a consistent, reliance, and cost-effective nondestructive testing technique for analyzing the internal bonding structures of fiber composites.

  5. Role of Imaging Techniques in Percutaneous Treatment of Mitral Regurgitation.

    PubMed

    Li, Chi-Hion; Arzamendi, Dabit; Carreras, Francesc

    2016-04-01

    Mitral regurgitation is the most prevalent valvular heart disease in the United States and the second most prevalent in Europe. Patients with severe mitral regurgitation have a poor prognosis with medical therapy once they become symptomatic or develop signs of significant cardiac dysfunction. However, as many as half of these patients are inoperable because of advanced age, ventricular dysfunction, or other comorbidities. Studies have shown that surgery increases survival in patients with organic mitral regurgitation due to valve prolapse but has no clinical benefit in those with functional mitral regurgitation. In this scenario, percutaneous repair for mitral regurgitation in native valves provides alternative management of valvular heart disease in patients at high surgical risk. Percutaneous repair for mitral regurgitation is a growing field that relies heavily on imaging techniques to diagnose functional anatomy and guide repair procedures.

  6. A new imaging technique for reliable migration velocity analysis

    SciTech Connect

    Duquet, B.; Ehinger, A.; Lailly, P.

    1994-12-31

    In case of severe lateral velocity variations prestack depth migration is not suitable for migration velocity analysis. The authors therefore propose to substitute prestack depth migration by prestack imaging by coupled linearized inversion (PICLI). Results obtained with the Marmousi model show the improvement offered by this method for migration velocity analysis. PICLI involves a huge amount of computation. Hence they have paid special attention both to the solution of the forward problem and to the optimization algorithm. To simplify the forward problem they make use of paraxial approximations of the wave equation. Efficiency in the optimization algorithm is obtained by an exact calculation of the gradient by means of the adjoint state technique and by an adequate preconditioning. Doing so the above mentioned improvement is obtained at reasonable cost.

  7. [Diagnosis of benign ovarian lesions using imaging techniques].

    PubMed

    Walczewska, Marta; Mocarska, Agnieszka; Burdan, Franciszek; Janczarek, Marzena; Żelazowska-Cieślińska, Iwonna; Starosławska, Elżbieta

    2015-01-01

    Benign ovarian focal lesions - such cystic, inflammatory, vascular and metaplastic changes - may occur at any age but they are most commonly observed in girls at puberty and in young women. The most important preliminary procedures in case of suspected adnexal pathologies are interview, physical examination and classical female bimanual pelvic examination which together with imaging techniques allow correct diagnosis. The commonly available and inexpensive method of female reproductive organs imaging is an ultrasonography (USG). Magnetic resonance (MR), computed tomography (CT) and in case of malignant lesions also positron emission tomography (PET) may also be performed. In doubtful cases, when the evaluation of lesions using USG method is difficult MR is recommended. Due to high resolution, it facilitates precise evaluation of the type and size of lesions, allows distinguishing simple and complex fluid collections while fat saturation sequences make it possible to distinguish cysts containing blood and fat. Moreover, the patient is not exposed to ionizing radiation, which is especially important in women in reproductive age and in children. Computed tomography is recommended for preoperative staging and monitoring of treatment of malignant adnexal neoplasms as well as localization of small peritoneal metastases.

  8. Hyperspectral-imaging-based techniques applied to wheat kernels characterization

    NASA Astrophysics Data System (ADS)

    Serranti, Silvia; Cesare, Daniela; Bonifazi, Giuseppe

    2012-05-01

    Single kernels of durum wheat have been analyzed by hyperspectral imaging (HSI). Such an approach is based on the utilization of an integrated hardware and software architecture able to digitally capture and handle spectra as an image sequence, as they results along a pre-defined alignment on a surface sample properly energized. The study was addressed to investigate the possibility to apply HSI techniques for classification of different types of wheat kernels: vitreous, yellow berry and fusarium-damaged. Reflectance spectra of selected wheat kernels of the three typologies have been acquired by a laboratory device equipped with an HSI system working in near infrared field (1000-1700 nm). The hypercubes were analyzed applying principal component analysis (PCA) to reduce the high dimensionality of data and for selecting some effective wavelengths. Partial least squares discriminant analysis (PLS-DA) was applied for classification of the three wheat typologies. The study demonstrated that good classification results were obtained not only considering the entire investigated wavelength range, but also selecting only four optimal wavelengths (1104, 1384, 1454 and 1650 nm) out of 121. The developed procedures based on HSI can be utilized for quality control purposes or for the definition of innovative sorting logics of wheat.

  9. Remote sensing of stress using electro-optics imaging technique

    NASA Astrophysics Data System (ADS)

    Chen, Tong; Yuen, Peter; Hong, Kan; Tsitiridis, Aristeidis; Kam, Firmin; Jackman, James; James, David; Richardson, Mark; Oxford, William; Piper, Jonathan; Thomas, Francis; Lightman, Stafford

    2009-09-01

    Emotional or physical stresses induce a surge of adrenaline in the blood stream under the command of the sympathetic nerve system, which, cannot be suppressed by training. The onset of this alleviated level of adrenaline triggers a number of physiological chain reactions in the body, such as dilation of pupil and an increased feed of blood to muscles etc. This paper reports for the first time how Electro-Optics (EO) technologies such as hyperspectral [1,2] and thermal imaging[3] methods can be used for the detection of stress remotely. Preliminary result using hyperspectral imaging technique has shown a positive identification of stress through an elevation of haemoglobin oxygenation saturation level in the facial region, and the effect is seen more prominently for the physical stressor than the emotional one. However, all results presented so far in this work have been interpreted together with the base line information as the reference point, and that really has limited the overall usefulness of the developing technology. The present result has highlighted this drawback and it prompts for the need of a quantitative assessment of the oxygenation saturation and to correlate it directly with the stress level as the top priority of the next stage of research.

  10. Probing Endoplasmic Reticulum Dynamics using Fluorescence Imaging and Photobleaching Techniques

    PubMed Central

    Costantini, Lindsey; Snapp, Erik

    2013-01-01

    This UNIT describes approaches and tools for studying the dynamics and organization of endoplasmic reticulum (ER) membranes and proteins in living cells using commercially available widefield and confocal laser scanning microscopes (CLSM). It has been long appreciated that the ER plays a number of key roles in secretory protein biogenesis, calcium regulation, and lipid synthesis. However, study of these processes has been often restricted to biochemical assays that average the behaviors of millions of lysed cells or to imaging static fixed cells. Now, with new fluorescent protein reporter tools, highly sensitive commercial microscopes, and photobleaching techniques, it is possible to interrogate the behaviors of ER proteins, membranes, and stress pathways in single cells with exquisite spatial and temporal resolution. The ER presents a unique set of imaging challenges including the high mobility of ER membranes, a diverse range of dynamic ER structures, and the influence of post-translational modifications on fluorescent protein reporters. Solutions to these challenges are described and considerations for performing photobleaching assays, especially Fluorescence Recovery after Photobleaching (FRAP) and Fluorescence Loss in Photobleaching (FLIP) for ER proteins will be discussed. In addition, ER reporters and ER-specific pharmacologic compounds are presented with a focus on misfolded secretory protein stress and the Unfolded Protein Response (UPR). PMID:24510787

  11. Pancreatic fluid collections: What is the ideal imaging technique?

    PubMed

    Dhaka, Narendra; Samanta, Jayanta; Kochhar, Suman; Kalra, Navin; Appasani, Sreekanth; Manrai, Manish; Kochhar, Rakesh

    2015-12-28

    Pancreatic fluid collections (PFCs) are seen in up to 50% of cases of acute pancreatitis. The Revised Atlanta classification categorized these collections on the basis of duration of disease and contents, whether liquid alone or a mixture of fluid and necrotic debris. Management of these different types of collections differs because of the variable quantity of debris; while patients with pseudocysts can be drained by straight-forward stent placement, walled-off necrosis requires multi-disciplinary approach. Differentiating these collections on the basis of clinical severity alone is not reliable, so imaging is primarily performed. Contrast-enhanced computed tomography is the commonly used modality for the diagnosis and assessment of proportion of solid contents in PFCs; however with certain limitations such as use of iodinated contrast material especially in renal failure patients and radiation exposure. Magnetic resonance imaging (MRI) performs better than computed tomography (CT) in characterization of pancreatic/peripancreatic fluid collections especially for quantification of solid debris and fat necrosis (seen as fat density globules), and is an alternative in those situations where CT is contraindicated. Also magnetic resonance cholangiopancreatography is highly sensitive for detecting pancreatic duct disruption and choledocholithiasis. Endoscopic ultrasound is an evolving technique with higher reproducibility for fluid-to-debris component estimation with the added advantage of being a single stage procedure for both diagnosis (solid debris delineation) and management (drainage of collection) in the same sitting. Recently role of diffusion weighted MRI and positron emission tomography/CT with (18)F-FDG labeled autologous leukocytes is also emerging for detection of infection noninvasively. Comparative studies between these imaging modalities are still limited. However we look forward to a time when this gap in literature will be fulfilled.

  12. Pancreatic fluid collections: What is the ideal imaging technique?

    PubMed Central

    Dhaka, Narendra; Samanta, Jayanta; Kochhar, Suman; Kalra, Navin; Appasani, Sreekanth; Manrai, Manish; Kochhar, Rakesh

    2015-01-01

    Pancreatic fluid collections (PFCs) are seen in up to 50% of cases of acute pancreatitis. The Revised Atlanta classification categorized these collections on the basis of duration of disease and contents, whether liquid alone or a mixture of fluid and necrotic debris. Management of these different types of collections differs because of the variable quantity of debris; while patients with pseudocysts can be drained by straight-forward stent placement, walled-off necrosis requires multi-disciplinary approach. Differentiating these collections on the basis of clinical severity alone is not reliable, so imaging is primarily performed. Contrast-enhanced computed tomography is the commonly used modality for the diagnosis and assessment of proportion of solid contents in PFCs; however with certain limitations such as use of iodinated contrast material especially in renal failure patients and radiation exposure. Magnetic resonance imaging (MRI) performs better than computed tomography (CT) in characterization of pancreatic/peripancreatic fluid collections especially for quantification of solid debris and fat necrosis (seen as fat density globules), and is an alternative in those situations where CT is contraindicated. Also magnetic resonance cholangiopancreatography is highly sensitive for detecting pancreatic duct disruption and choledocholithiasis. Endoscopic ultrasound is an evolving technique with higher reproducibility for fluid-to-debris component estimation with the added advantage of being a single stage procedure for both diagnosis (solid debris delineation) and management (drainage of collection) in the same sitting. Recently role of diffusion weighted MRI and positron emission tomography/CT with 18F-FDG labeled autologous leukocytes is also emerging for detection of infection noninvasively. Comparative studies between these imaging modalities are still limited. However we look forward to a time when this gap in literature will be fulfilled. PMID:26730150

  13. Statistical, connectionist, and fuzzy inference techniques for image classification

    NASA Astrophysics Data System (ADS)

    Israel, Steven A.; Kasabov, Nikola K.

    1997-07-01

    A spectral classification comparison was performed using four different classifiers, the parametric maximum likelihood classifier and three nonparametric classifiers: neural networks, fuzzy rules, and fuzzy neural networks. The input image data is a System Pour l'Observation de la Terre (SPOT) satellite image of Otago Harbour near Dunedin, New Zealand. The SPOT image data contains three spectral bands in the green, red, and visible infrared portions of the electromagnetic spectrum. The specific area contains intertidal vegetation species above and below the waterline. Of specific interest is eelgrass (Zostera novazelandica), which is a biotic indicator of environmental health. The mixed covertypes observed in an in situ field survey are difficult to classify because of subjectivity and water's preferential absorption of the visible infrared spectrum. In this analysis, each of the classifiers were applied to the data in two different testing procedures. In the first test procedure, the reference data was divided into training and test by area. Although this is an efficient data handling technique, the classifier is not presented with all of the subtle microclimate variations. In the second test procedure, the same reference areas were amalgamated and randomly sorted into training and test data. The amalgamation and sorting were performed external to the analysis software. For the first testing procedure, the highest testing accuracy was obtained through the use of fuzzy inferences at 89%. In the second testing procedure, the maximum likelihood classifier and the fuzzy neural networks provided the best results. Although the testing accuracy for the maximum likelihood classifier and the fuzzy neural networks provided the best results. Although the testing accuracy for the maximum likelihood classifier and the fuzzy neural networks were simulator, the latter algorithm has additional features, such as rules extraction, explanation, and fine tuning of individual classes.

  14. Near-field three-dimensional radar imaging techniques and applications.

    PubMed

    Sheen, David; McMakin, Douglas; Hall, Thomas

    2010-07-01

    Three-dimensional radio frequency imaging techniques have been developed for a variety of near-field applications, including radar cross-section imaging, concealed weapon detection, ground penetrating radar imaging, through-barrier imaging, and nondestructive evaluation. These methods employ active radar transceivers that operate at various frequency ranges covering a wide range, from less than 100 MHz to in excess of 350 GHz, with the frequency range customized for each application. Computational wavefront reconstruction imaging techniques have been developed that optimize the resolution and illumination quality of the images. In this paper, rectilinear and cylindrical three-dimensional imaging techniques are described along with several application results.

  15. Near-Field Three-Dimensional Radar Imaging Techniques and Applications

    SciTech Connect

    Sheen, David M.; McMakin, Douglas L.; Hall, Thomas E.

    2010-07-01

    Three dimensional radio frequency imaging techniques have been developed for a variety of near field applications including radar cross-section imaging, concealed weapon detection, ground penetrating radar imaging, through-barrier imaging, and non-destructive evaluation. These methods employ active radar transceivers that operate at various frequency ranges covering a wide range from less than 100 MHz to in excess of 350 GHz with the frequency range customized for each application. Computational wavefront reconstruction imaging techniques have been developed that optimize the resolution and illumination quality of the images. In this paper, rectilinear and cylindrical three-dimensional imaging techniques are described along with several application results.

  16. Digital Image Processing Technique for Breast Cancer Detection

    NASA Astrophysics Data System (ADS)

    Guzmán-Cabrera, R.; Guzmán-Sepúlveda, J. R.; Torres-Cisneros, M.; May-Arrioja, D. A.; Ruiz-Pinales, J.; Ibarra-Manzano, O. G.; Aviña-Cervantes, G.; Parada, A. González

    2013-09-01

    Breast cancer is the most common cause of death in women and the second leading cause of cancer deaths worldwide. Primary prevention in the early stages of the disease becomes complex as the causes remain almost unknown. However, some typical signatures of this disease, such as masses and microcalcifications appearing on mammograms, can be used to improve early diagnostic techniques, which is critical for women’s quality of life. X-ray mammography is the main test used for screening and early diagnosis, and its analysis and processing are the keys to improving breast cancer prognosis. As masses and benign glandular tissue typically appear with low contrast and often very blurred, several computer-aided diagnosis schemes have been developed to support radiologists and internists in their diagnosis. In this article, an approach is proposed to effectively analyze digital mammograms based on texture segmentation for the detection of early stage tumors. The proposed algorithm was tested over several images taken from the digital database for screening mammography for cancer research and diagnosis, and it was found to be absolutely suitable to distinguish masses and microcalcifications from the background tissue using morphological operators and then extract them through machine learning techniques and a clustering algorithm for intensity-based segmentation.

  17. The ReactorAFM: non-contact atomic force microscope operating under high-pressure and high-temperature catalytic conditions.

    PubMed

    Roobol, S B; Cañas-Ventura, M E; Bergman, M; van Spronsen, M A; Onderwaater, W G; van der Tuijn, P C; Koehler, R; Ofitserov, A; van Baarle, G J C; Frenken, J W M

    2015-03-01

    An Atomic Force Microscope (AFM) has been integrated in a miniature high-pressure flow reactor for in-situ observations of heterogeneous catalytic reactions under conditions similar to those of industrial processes. The AFM can image model catalysts such as those consisting of metal nanoparticles on flat oxide supports in a gas atmosphere up to 6 bar and at a temperature up to 600 K, while the catalytic activity can be measured using mass spectrometry. The high-pressure reactor is placed inside an Ultrahigh Vacuum (UHV) system to supplement it with standard UHV sample preparation and characterization techniques. To demonstrate that this instrument successfully bridges both the pressure gap and the materials gap, images have been recorded of supported palladium nanoparticles catalyzing the oxidation of carbon monoxide under high-pressure, high-temperature conditions.

  18. The ReactorAFM: Non-contact atomic force microscope operating under high-pressure and high-temperature catalytic conditions

    SciTech Connect

    Roobol, S. B.; Cañas-Ventura, M. E.; Bergman, M.; Spronsen, M. A. van; Onderwaater, W. G.; Tuijn, P. C. van der; Koehler, R.; Frenken, J. W. M.; Ofitserov, A.; Baarle, G. J. C. van

    2015-03-15

    An Atomic Force Microscope (AFM) has been integrated in a miniature high-pressure flow reactor for in-situ observations of heterogeneous catalytic reactions under conditions similar to those of industrial processes. The AFM can image model catalysts such as those consisting of metal nanoparticles on flat oxide supports in a gas atmosphere up to 6 bar and at a temperature up to 600 K, while the catalytic activity can be measured using mass spectrometry. The high-pressure reactor is placed inside an Ultrahigh Vacuum (UHV) system to supplement it with standard UHV sample preparation and characterization techniques. To demonstrate that this instrument successfully bridges both the pressure gap and the materials gap, images have been recorded of supported palladium nanoparticles catalyzing the oxidation of carbon monoxide under high-pressure, high-temperature conditions.

  19. Stellar Family Portrait Takes Imaging Technique to New Extremes

    NASA Astrophysics Data System (ADS)

    2009-12-01

    The young star cluster Trumpler 14 is revealed in another stunning ESO image. The amount of exquisite detail seen in this portrait, which beautifully reveals the life of a large family of stars, is due to the Multi-conjugate Adaptive optics Demonstrator (MAD) on ESO's Very Large Telescope. Never before has such a large patch of sky been imaged using adaptive optics [1], a technique by which astronomers are able to remove most of the atmosphere's blurring effects. Noted for harbouring Eta Carinae - one of the wildest and most massive stars in our galaxy - the impressive Carina Nebula also houses a handful of massive clusters of young stars. The youngest of these stellar families is the Trumpler 14 star cluster, which is less than one million years old - a blink of an eye in the Universe's history. This large open cluster is located some 8000 light-years away towards the constellation of Carina (the Keel). A team of astronomers, led by Hugues Sana, acquired astounding images of the central part of Trumpler 14 using the Multi-conjugate Adaptive optics Demonstrator (MAD, [2]) mounted on ESO's Very Large Telescope (VLT). Thanks to MAD, astronomers were able to remove most of the blurring effects of the atmosphere and thus obtain very sharp images. MAD performs this correction over a much larger patch of the sky than any other current adaptive optics instrument, allowing astronomers to make wider, crystal-clear images. Thanks to the high quality of the MAD images, the team of astronomers could obtain a very nice family portrait. They found that Trumpler 14 is not only the youngest - with a refined, newly estimated age of just 500 000 years - but also one of the most populous star clusters within the nebula. The astronomers counted about 2000 stars in their image, spanning the whole range from less than one tenth up to a factor of several tens of times the mass of our own Sun. And this in a region which is only about six light-years across, that is, less than twice the

  20. Stellar Family Portrait Takes Imaging Technique to New Extremes

    NASA Astrophysics Data System (ADS)

    2009-12-01

    The young star cluster Trumpler 14 is revealed in another stunning ESO image. The amount of exquisite detail seen in this portrait, which beautifully reveals the life of a large family of stars, is due to the Multi-conjugate Adaptive optics Demonstrator (MAD) on ESO's Very Large Telescope. Never before has such a large patch of sky been imaged using adaptive optics [1], a technique by which astronomers are able to remove most of the atmosphere's blurring effects. Noted for harbouring Eta Carinae - one of the wildest and most massive stars in our galaxy - the impressive Carina Nebula also houses a handful of massive clusters of young stars. The youngest of these stellar families is the Trumpler 14 star cluster, which is less than one million years old - a blink of an eye in the Universe's history. This large open cluster is located some 8000 light-years away towards the constellation of Carina (the Keel). A team of astronomers, led by Hugues Sana, acquired astounding images of the central part of Trumpler 14 using the Multi-conjugate Adaptive optics Demonstrator (MAD, [2]) mounted on ESO's Very Large Telescope (VLT). Thanks to MAD, astronomers were able to remove most of the blurring effects of the atmosphere and thus obtain very sharp images. MAD performs this correction over a much larger patch of the sky than any other current adaptive optics instrument, allowing astronomers to make wider, crystal-clear images. Thanks to the high quality of the MAD images, the team of astronomers could obtain a very nice family portrait. They found that Trumpler 14 is not only the youngest - with a refined, newly estimated age of just 500 000 years - but also one of the most populous star clusters within the nebula. The astronomers counted about 2000 stars in their image, spanning the whole range from less than one tenth up to a factor of several tens of times the mass of our own Sun. And this in a region which is only about six light-years across, that is, less than twice the

  1. Study of optical techniques for the Ames unitary wind tunnel: Digital image processing, part 6

    NASA Technical Reports Server (NTRS)

    Lee, George

    1993-01-01

    A survey of digital image processing techniques and processing systems for aerodynamic images has been conducted. These images covered many types of flows and were generated by many types of flow diagnostics. These include laser vapor screens, infrared cameras, laser holographic interferometry, Schlieren, and luminescent paints. Some general digital image processing systems, imaging networks, optical sensors, and image computing chips were briefly reviewed. Possible digital imaging network systems for the Ames Unitary Wind Tunnel were explored.

  2. Data correction techniques for the airborne large-aperture static image spectrometer based on image registration

    NASA Astrophysics Data System (ADS)

    Zhang, Geng; Shi, Dalian; Wang, Shuang; Yu, Tao; Hu, Bingliang

    2015-01-01

    We propose an approach to correct the data of the airborne large-aperture static image spectrometer (LASIS). LASIS is a kind of stationary interferometer which compromises flux output and device stability. It acquires a series of interferograms to reconstruct the hyperspectral image cube. Reconstruction precision of the airborne LASIS data suffers from the instability of the plane platform. Usually, changes of plane attitudes, such as yaws, pitches, and rolls, can be precisely measured by the inertial measurement unit. However, the along-track and across-track translation errors are difficult to measure precisely. To solve this problem, we propose a co-optimization approach to compute the translation errors between the interferograms using an image registration technique which helps to correct the interferograms with subpixel precision. To demonstrate the effectiveness of our approach, experiments are run on real airborne LASIS data and our results are compared with those of the state-of-the-art approaches.

  3. Emerging Techniques in Brain Tumor Imaging: What Radiologists Need to Know.

    PubMed

    Kim, Minjae; Kim, Ho Sung

    2016-01-01

    Among the currently available brain tumor imaging, advanced MR imaging techniques, such as diffusion-weighted MR imaging and perfusion MR imaging, have been used for solving diagnostic challenges associated with conventional imaging and for monitoring the brain tumor treatment response. Further development of advanced MR imaging techniques and postprocessing methods may contribute to predicting the treatment response to a specific therapeutic regimen, particularly using multi-modality and multiparametric imaging. Over the next few years, new imaging techniques, such as amide proton transfer imaging, will be studied regarding their potential use in quantitative brain tumor imaging. In this review, the pathophysiologic considerations and clinical validations of these promising techniques are discussed in the context of brain tumor characterization and treatment response.

  4. Emerging Techniques in Brain Tumor Imaging: What Radiologists Need to Know.

    PubMed

    Kim, Minjae; Kim, Ho Sung

    2016-01-01

    Among the currently available brain tumor imaging, advanced MR imaging techniques, such as diffusion-weighted MR imaging and perfusion MR imaging, have been used for solving diagnostic challenges associated with conventional imaging and for monitoring the brain tumor treatment response. Further development of advanced MR imaging techniques and postprocessing methods may contribute to predicting the treatment response to a specific therapeutic regimen, particularly using multi-modality and multiparametric imaging. Over the next few years, new imaging techniques, such as amide proton transfer imaging, will be studied regarding their potential use in quantitative brain tumor imaging. In this review, the pathophysiologic considerations and clinical validations of these promising techniques are discussed in the context of brain tumor characterization and treatment response. PMID:27587949

  5. Emerging Techniques in Brain Tumor Imaging: What Radiologists Need to Know

    PubMed Central

    Kim, Minjae

    2016-01-01

    Among the currently available brain tumor imaging, advanced MR imaging techniques, such as diffusion-weighted MR imaging and perfusion MR imaging, have been used for solving diagnostic challenges associated with conventional imaging and for monitoring the brain tumor treatment response. Further development of advanced MR imaging techniques and postprocessing methods may contribute to predicting the treatment response to a specific therapeutic regimen, particularly using multi-modality and multiparametric imaging. Over the next few years, new imaging techniques, such as amide proton transfer imaging, will be studied regarding their potential use in quantitative brain tumor imaging. In this review, the pathophysiologic considerations and clinical validations of these promising techniques are discussed in the context of brain tumor characterization and treatment response. PMID:27587949

  6. Structural Image Analysis of the Brain in Neuropsychology Using Magnetic Resonance Imaging (MRI) Techniques.

    PubMed

    Bigler, Erin D

    2015-09-01

    Magnetic resonance imaging (MRI) of the brain provides exceptional image quality for visualization and neuroanatomical classification of brain structure. A variety of image analysis techniques provide both qualitative as well as quantitative methods to relate brain structure with neuropsychological outcome and are reviewed herein. Of particular importance are more automated methods that permit analysis of a broad spectrum of anatomical measures including volume, thickness and shape. The challenge for neuropsychology is which metric to use, for which disorder and the timing of when image analysis methods are applied to assess brain structure and pathology. A basic overview is provided as to the anatomical and pathoanatomical relations of different MRI sequences in assessing normal and abnormal findings. Some interpretive guidelines are offered including factors related to similarity and symmetry of typical brain development along with size-normalcy features of brain anatomy related to function. The review concludes with a detailed example of various quantitative techniques applied to analyzing brain structure for neuropsychological outcome studies in traumatic brain injury.

  7. Techniques for radar imaging using a wideband adaptive array

    NASA Astrophysics Data System (ADS)

    Curry, Mark Andrew

    A microwave imaging approach is simulated and validated experimentally that uses a small, wideband adaptive array. The experimental 12-element linear array and microwave receiver uses stepped frequency CW signals from 2--3 GHz and receives backscattered energy from short range objects in a +/-90° field of view. Discone antenna elements are used due to their wide temporal bandwidth, isotropic azimuth beam pattern and fixed phase center. It is also shown that these antennas have very low mutual coupling, which significantly reduces the calibration requirements. The MUSIC spectrum is used as a calibration tool. Spatial resampling is used to correct the dispersion effects, which if not compensated causes severe reduction in detection and resolution for medium and large off-axis angles. Fourier processing provides range resolution and the minimum variance spectral estimate is employed to resolve constant range targets for improved angular resolution. Spatial smoothing techniques are used to generate signal plus interference covariance matrices at each range bin. Clutter affects the angular resolution of the array due to the increase in rank of the signal plus clutter covariance matrix, whereas at the same time the rank of this matrix is reduced for closely spaced scatterers due to signal coherence. A method is proposed to enhance angular resolution in the presence of clutter by an approximate signal subspace projection (ASSP) that maps the received signal space to a lower effective rank approximation. This projection operator has a scalar control parameter that is a function of the signal and clutter amplitude estimates. These operations are accomplished without using eigendecomposition. The low sidelobe levels allow the imaging of the integrated backscattering from the absorber cones in the chamber. This creates a fairly large clutter signature for testing ASSP. We can easily resolve 2 dihedrals placed at about 70% of a beamwidth apart, with a signal to clutter ratio

  8. MR-Based Cardiac and Respiratory Motion-Compensation Techniques for PET-MR Imaging.

    PubMed

    Munoz, Camila; Kolbitsch, Christoph; Reader, Andrew J; Marsden, Paul; Schaeffter, Tobias; Prieto, Claudia

    2016-04-01

    Cardiac and respiratory motion cause image quality degradation in PET imaging, affecting diagnostic accuracy of the images. Whole-body simultaneous PET-MR scanners allow for using motion information estimated from MR images to correct PET data and produce motion-compensated PET images. This article reviews methods that have been proposed to estimate motion from MR images and different techniques to include this information in PET reconstruction, in order to overcome the problem of cardiac and respiratory motion in PET-MR imaging. MR-based motion correction techniques significantly increase lesion detectability and contrast, and also improve accuracy of uptake values in PET images.

  9. Use of image guided radiation therapy techniques and imaging dose measurement at Indian hospitals: A survey

    PubMed Central

    Deshpande, Sudesh; Dhote, D. S.; Kumar, Rajesh; Naidu, Suresh; Sutar, A.; Kannan, V.

    2015-01-01

    A national survey was conducted to obtain information about the use of image-guided radiotherapy (IGRT) techniques and IGRT dose measurement methods being followed at Indian radiotherapy centers. A questionnaire containing parameters relevant to use of IGRT was prepared to collect the information pertaining to (i) availability and type of IGRT delivery system, (ii) frequency of image acquisition protocol and utilization of these images for different purpose, and (iii) imaging dose measurement. The questionnaire was circulated to 75 hospitals in the country having IGRT facility, and responses of 51 centers were received. Survey results showed that among surveyed hospitals, 86% centers have IGRT facility, 78% centers have kilo voltage three-dimensional volumetric imaging. 75% of hospitals in our study do not perform computed tomography dose index measurements and 89% of centers do not perform patient dose measurements. Moreover, only 29% physicists believe IGRT dose is additional radiation burden to patient. This study has brought into focus the need to design a national protocol for IGRT dose measurement and development of indigenous tools to perform IGRT dose measurements. PMID:26865758

  10. Infrared imaging - A validation technique for computational fluid dynamics codes used in STOVL applications

    NASA Technical Reports Server (NTRS)

    Hardman, R. R.; Mahan, J. R.; Smith, M. H.; Gelhausen, P. A.; Van Dalsem, W. R.

    1991-01-01

    The need for a validation technique for computational fluid dynamics (CFD) codes in STOVL applications has led to research efforts to apply infrared thermal imaging techniques to visualize gaseous flow fields. Specifically, a heated, free-jet test facility was constructed. The gaseous flow field of the jet exhaust was characterized using an infrared imaging technique in the 2 to 5.6 micron wavelength band as well as conventional pitot tube and thermocouple methods. These infrared images are compared to computer-generated images using the equations of radiative exchange based on the temperature distribution in the jet exhaust measured with the thermocouple traverses. Temperature and velocity measurement techniques, infrared imaging, and the computer model of the infrared imaging technique are presented and discussed. From the study, it is concluded that infrared imaging techniques coupled with the radiative exchange equations applied to CFD models are a valid method to qualitatively verify CFD codes used in STOVL applications.

  11. Insights into Epoxy Network Nanostructural Heterogeneity Using AFM-IR.

    PubMed

    Morsch, Suzanne; Liu, Yanwen; Lyon, Stuart B; Gibbon, Simon R

    2016-01-13

    The first direct observation of a chemically heterogeneous nanostructure within an epoxy resin is reported. Epoxy resins comprise the matrix component of many high performance composites, coatings and adhesives, yet the molecular network structure that underpins the performance of these industrially essential materials is not well understood. Internal nodular morphologies have repeatedly been reported for epoxy resins analyzed using SEM or AFM, yet the origin of these features remains a contentious subject, and epoxies are still commonly assumed to be chemically homogeneous. Uniquely, in this contribution we use the recently developed AFM-IR technique to eliminate previous differences in interpretation, and establish that nodule features correspond to heterogeneous network connectivity within an epoxy phenolic formulation.

  12. Cantilever energy effects on bimodal AFM: phase and amplitude contrast of multicomponent samples

    NASA Astrophysics Data System (ADS)

    Chakraborty, Ishita; Yablon, Dalia G.

    2013-11-01

    Bimodal atomic force microscopy (AFM) is a recently developed technique of dynamic AFM where a higher eigenmode of the cantilever is simultaneously excited along with the fundamental eigenmode. The effects of different operating parameters while imaging an impact copolymer blend of polypropylene (PP) and ethylene-propylene (E-P) rubber in bimodal mode are explored through experiments and numerical simulations. The higher mode amplitude and phase contrasts between the two components of the sample reverse at different points as the free amplitude of the higher eigenmode is increased. Three different regimes are identified experimentally depending on the relative contrast between the PP and the E-P rubber. It is observed that the kinetic energy and free air drive input energy of the two cantilever eigenmodes play a role in determining the regimes of operation. Numerical simulations conducted with appropriate tip-sample interaction forces support the experimental results. An understanding of these regimes and the associated cantilever dynamics will guide a rational approach towards selecting appropriate operating parameters.

  13. Optimization of image acquisition techniques for dual-energy imaging of the chest

    SciTech Connect

    Shkumat, N. A.; Siewerdsen, J. H.; Dhanantwari, A. C.; Williams, D. B.; Richard, S.; Paul, N. S.; Yorkston, J.; Van Metter, R.

    2007-10-15

    Experimental and theoretical studies were conducted to determine optimal acquisition techniques for a prototype dual-energy (DE) chest imaging system. Technique factors investigated included the selection of added x-ray filtration, kVp pair, and the allocation of dose between low- and high-energy projections, with total dose equal to or less than that of a conventional chest radiograph. Optima were computed to maximize lung nodule detectability as characterized by the signal-difference-to-noise ratio (SDNR) in DE chest images. Optimal beam filtration was determined by cascaded systems analysis of DE image SDNR for filter selections across the periodic table (Z{sub filter}=1-92), demonstrating the importance of differential filtration between low- and high-kVp projections and suggesting optimal high-kVp filters in the range Z{sub filter}=25-50. For example, added filtration of {approx}2.1 mm Cu, {approx}1.2 mm Zr, {approx}0.7 mm Mo, and {approx}0.6 mm Ag to the high-kVp beam provided optimal (and nearly equivalent) soft-tissue SDNR. Optimal kVp pair and dose allocation were investigated using a chest phantom presenting simulated lung nodules and ribs for thin, average, and thick body habitus. Low- and high-energy techniques ranged from 60-90 kVp and 120-150 kVp, respectively, with peak soft-tissue SDNR achieved at [60/120] kVp for all patient thicknesses and all levels of imaging dose. A strong dependence on the kVp of the low-energy projection was observed. Optimal allocation of dose between low- and high-energy projections was such that {approx}30% of the total dose was delivered by the low-kVp projection, exhibiting a fairly weak dependence on kVp pair and dose. The results have guided the implementation of a prototype DE imaging system for imaging trials in early-stage lung nodule detection and diagnosis.

  14. Percutaneous iliosacral screw placement using image guided techniques.

    PubMed

    Tonetti, J; Carrat, L; Lavalleé, S; Pittet, L; Merloz, P; Chirossel, J P

    1998-09-01

    A computer assisted technique of iliosacral screw placement that is applicable to unstable pelvic ring fractures is proposed. The goals are to operate noninvasively with a percutaneous procedure to decrease the complications of surgical exposure and to provide greater accuracy in locating the close neurovascular structures. Preoperative computed tomographic images of the pelvis are provided and a computed tomography three-dimensional model is built. In this model, the optimal trajectories for the drilling are planned. An ultrasound based registration is performed intraoperatively. This registration is the most original part of this work. After performing the passive drilling guidance step, the surgeon places the screws. The accuracy of the ultrasound based registration is checked by comparison with a standard surface based registration at the end of the test experiment. Each screw position is verified by a computed tomographic examination. Four human anatomic specimen pelves were tested with three screw insertions for each pelvis (12 screws). All of the screws were considered to be placed correctly. The method is safe and encourages the start of clinical application. PMID:9755769

  15. Juvenile angiofibroma: imaging by magnetic resonance, CT and conventional techniques.

    PubMed

    Lloyd, G A; Phelps, P D

    1986-08-01

    Thirty patients with histologically verified angiofibromata have been investigated over a period of 14 years. They have been examined by conventional radiographic techniques and computerized tomography, and more recently 4 patients have been scanned by magnetic resonance. CT studies of patients with small tumours have shown that the point of origin is at the sphenopalatine foramen. The tumour enlarges the foramen and erodes bone locally giving rise to characteristic signs both on plain X-ray and on CT scan. The value of magnetic resonance imaging is assessed and it is concluded that in the presence of the characteristic 'antral sign' on plain X-ray, 3-plane magnetic resonance is now the method of choice to show the extent of the tumour pre-operatively. Magnetic resonance can also show the vascular nature of the angiofibroma by the demonstration of large vessels, shown as dark areas of negative signal within the tumour mass. With this new method of investigation available, angiography should now only be performed if embolization is deemed necessary prior to surgical removal of the angiofibroma.

  16. An efficient simultaneous reconstruction technique for tomographic particle image velocimetry

    NASA Astrophysics Data System (ADS)

    Atkinson, Callum; Soria, Julio

    2009-10-01

    To date, Tomo-PIV has involved the use of the multiplicative algebraic reconstruction technique (MART), where the intensity of each 3D voxel is iteratively corrected to satisfy one recorded projection, or pixel intensity, at a time. This results in reconstruction times of multiple hours for each velocity field and requires considerable computer memory in order to store the associated weighting coefficients and intensity values for each point in the volume. In this paper, a rapid and less memory intensive reconstruction algorithm is presented based on a multiplicative line-of-sight (MLOS) estimation that determines possible particle locations in the volume, followed by simultaneous iterative correction. Reconstructions of simulated images are presented for two simultaneous algorithms (SART and SMART) as well as the now standard MART algorithm, which indicate that the same accuracy as MART can be achieved 5.5 times faster or 77 times faster with 15 times less memory if the processing and storage of the weighting matrix is considered. Application of MLOS-SMART and MART to a turbulent boundary layer at Re θ = 2200 using a 4 camera Tomo-PIV system with a volume of 1,000 × 1,000 × 160 voxels is discussed. Results indicate improvements in reconstruction speed of 15 times that of MART with precalculated weighting matrix, or 65 times if calculation of the weighting matrix is considered. Furthermore the memory needed to store a large weighting matrix and volume intensity is reduced by almost 40 times in this case.

  17. Image processing techniques for laser propagation through atmospheric turbulence

    NASA Astrophysics Data System (ADS)

    Belichki, Sara B.; Splitter, Landon J.; Andrews, Larry C.; Phillips, Ronald L.; Coffaro, Joseph T.; Panich, Michael G.

    2014-06-01

    In order to better understand laser beam propagation through the analysis of the fluctuations in scintillation data, images from a 30 frame per second monochrome camera are utilized. Scintillation is the effect of atmospheric turbulence which is known to disrupt and alter the intensity and formation of a laser signal as it propagates through the atmosphere. To model and understand this phenomenon, recorded video output of a laser upon a target screen is inspected to determine how much of an effect the atmospheric turbulence has disrupted the laser signal as it has been propagated upon a set distance. The techniques of data processing outlined in this paper moves toward a software-based approach of determining the effects of propagation and detection of a laser based on the visual fluctuations caused by the scintillation effect. With the aid of such visual models, this paper examines the idea of implementing mathematical models via software that is then validated by the gathered video data taken at Kennedy Space Center.

  18. Micro-structural characterization of materials using synchrotron hard X-ray imaging techniques

    SciTech Connect

    Agrawal, Ashish Singh, Balwant; Kashyap, Yogesh; Sarkar, P. S.; Shukla, Mayank; Sinha, Amar

    2015-06-24

    X-ray imaging has been an important tool to study the materials microstructure with the laboratory based sources however the advent of third generation synchrotron sources has introduced new concepts in X-ray imaging such as phase contrast imaging, micro-tomography, fluorescence imaging and diffraction enhance imaging. These techniques are being used to provide information of materials about their density distribution, porosity, geometrical and morphological characteristics at sub-micron scalewith improved contrast. This paper discusses the development of various imaging techniques at synchrotron based imaging beamline Indus-2 and few recent experiments carried out at this facility.

  19. Theoretical modelling of AFM for bimetallic tip-substrate interactions

    NASA Technical Reports Server (NTRS)

    Bozzolo, Guillermo; Ferrante, John

    1991-01-01

    Recently, a new technique for calculating the defect energetics of alloys based on Equivalent Crystal Theory was developed. This new technique successfully predicts the bulk properties for binary alloys as well as segregation energies in the dilute limit. The authors apply this limit for the calculation of energy and force as a function of separation of an atomic force microscope (AFM) tip and substrate. The study was done for different combinations of tip and sample materials. The validity of the universality discovered for the same metal interfaces is examined for the case of different metal interactions.

  20. Feasibility study of hidden flow imaging based on laser speckle technique using multiperspectives contrast images

    NASA Astrophysics Data System (ADS)

    Abookasis, David; Moshe, Tomer

    2014-11-01

    This paper demonstrates the insertion of lens array in the front of a CCD camera in a laser speckle imaging (LSI) like-technique to acquire multiple speckle reflectance projections for imaging blood flow in an intact biological tissue. In some of LSI applications, flow imaging is obtained by thinning or removing of the upper tissue layers to access blood vessels. In contrast, with the proposed approach flow imaging can be achieved while the tissue is intact. In the system, each lens from an hexagonal lens array observed the sample from slightly different perspectives and captured with a CCD camera. In the computer, these multiview raw images are converted to speckled contrast maps. Then, a self-deconvolution shift-and-add algorithm is employed for processing yields high contrast flow information. The method is experimentally validated first with a plastic tube filled with scattering liquid running at different controlled flow rates hidden in a biological tissue and then extensively tested for imaging of cerebral blood flow in an intact rodent head experience different conditions. A total of fifteen mice were used in the experiments divided randomly into three groups as follows: Group 1 (n=5) consisted of injured mice experience hypoxic ischemic brain injury monitored for ~40 min. Group 2 (n=5) injured mice experience anoxic brain injury monitored up to 20 min. Group 3 (n=5) experience functional activation monitored up to ~35 min. To increase tissue transparency and the penetration depth of photons through head tissue layers, an optical clearing method was employed. To our knowledge, this work presents for the first time the use of lens array in LSI scheme.

  1. Using XAFS, EDAX and AFM in comparative study of various natural and synthetic emeralds

    NASA Astrophysics Data System (ADS)

    Parikh, P.; Saini, N. L.; Dalela, S.; Bhardwaj, D. M.; Fernandes, S.; Gupta, R. P.; Garg, K. B.

    2003-01-01

    We have performed XAFS, EDAX and AFM studies on some natural and synthetic emeralds. While the XAFS results yield information on changes in the valence of the Cr ion and the n-n distance the AFM is used to determine the areal atomic density on surface of the crystals. It is a pilot study to explore if the three techniques can offer a possible way of distinguishing between the natural and synthetic emeralds and the results are promising.

  2. UV laser ablation of intraocular lenses: SEM and AFM microscopy examination of the biomaterial surface

    NASA Astrophysics Data System (ADS)

    Spyratou, E.; Asproudis, I.; Tsoutsi, D.; Bacharis, C.; Moutsouris, K.; Makropoulou, M.; Serafetinides, A. A.

    2010-02-01

    Several new materials and patterns are studied for the formation and etching of intraocular lenses (IOLs), in order to improve their optical properties, to reduce the diffractive aberrations and to decrease the incidence of posterior capsular opacification. The aim of this study is to investigate the use of UV ( λ = 266 nm) laser pulses to ablate the intraocular lenses materials, and thus to provide an alternative to conventional surface shaping techniques for IOLs fabrication. Ablation experiments were conducted using various polymer substrates of hydrophobic acrylic IOLs and PMMA IOLs. We investigated the ablation efficiency and the morphology of the ablated area by imaging the surface modification with atomic force microscopy (AFM) and scanning electron microscopy (SEM). The morphological appearance of IOL samples reveals the effect of a photochemical and photothermal ablation mechanism.

  3. Simultaneous topographic and amperometric membrane mapping using an AFM probe integrated biosensor.

    PubMed

    Stanca, Sarmiza Elena; Csaki, Andrea; Urban, Matthias; Nietzsche, Sandor; Biskup, Christoph; Fritzsche, Wolfgang

    2011-02-15

    The investigation of the plasma membrane with intercorrelated multiparameter techniques is a prerequisite for understanding its function. Presented here, is a simultaneous electrochemical and topographic study of the cell membrane using a miniaturized amperometric enzymatic biosensor. The fabrication of this biosensor is also reported. The biosensor combines a scanning force microscopy (AFM) gold-coated cantilever and an enzymatic transducer layer of peroxidases (PODs). When these enzymes are brought in contact with the substrate, the specific redox reaction produces an electric current. The intensity of this current is detected simultaneously with the surface imaging. For sensor characterization, hydroquinone-2-carboxylic acid (HQ) is selected as an intrinsic source of H(2)O(2). HQ has been electrochemically regenerated by the reduction of antraquinone-2-carboxylic acid (AQ). The biosensor reaches the steady state value of the current intensity in 1 ± 0.2s.

  4. Nanoscale fabrication of a peptide layer using an AFM probe

    NASA Astrophysics Data System (ADS)

    Nakamura, Chikashi; Miyamoto, Chie; Obataya, Ikuo; Nakamura, Noriyuki; Miyake, Jun

    2004-12-01

    Scanning probe microscopy has been applied in many studies to manipulate atoms or molecules. In particular, force spectroscopy using an atomic force microscope (AFM) is a powerful tool to elucidate intermolecular or intramolecular interactions and provide mechanical information. If enzymes could retain their activity when immobilized on probes, not only could enzyme-substrate interactions be investigated but also the probes could be used for precise biomolecular manipulation at the nano-scale. In our study, a method based on "Enzymatic Nanolithography" was successfully performed in a buffered solution using Staphylococcal serine V8 protease and AFM. To estimate the fabricating activity of the protease immobilized on the AFM tip to peptides immobilized on a substrate, we designed and synthesized peptides that showed enzymatic action specific to the protease. When the protease digested the reporter peptide a quencher residue was released from the main flame of the peptide and resulted in fluorescence. In the designed 9 mer peptides, TAMRA functioned as a good quencher for FAM. After contact of the protease-immobilized tip to the reporter peptide layer, a fluorescent area was observed by microscopic imaging.

  5. Multimodality Image Fusion-Guided Procedures: Technique, Accuracy, and Applications

    SciTech Connect

    Abi-Jaoudeh, Nadine; Kruecker, Jochen; Kadoury, Samuel; Kobeiter, Hicham; Venkatesan, Aradhana M. Levy, Elliot Wood, Bradford J.

    2012-10-15

    Personalized therapies play an increasingly critical role in cancer care: Image guidance with multimodality image fusion facilitates the targeting of specific tissue for tissue characterization and plays a role in drug discovery and optimization of tailored therapies. Positron-emission tomography (PET), magnetic resonance imaging (MRI), and contrast-enhanced computed tomography (CT) may offer additional information not otherwise available to the operator during minimally invasive image-guided procedures, such as biopsy and ablation. With use of multimodality image fusion for image-guided interventions, navigation with advanced modalities does not require the physical presence of the PET, MRI, or CT imaging system. Several commercially available methods of image-fusion and device navigation are reviewed along with an explanation of common tracking hardware and software. An overview of current clinical applications for multimodality navigation is provided.

  6. Segmentation Fusion Techniques with Application to Plenoptic Images: A Survey.

    NASA Astrophysics Data System (ADS)

    Evin, D.; Hadad, A.; Solano, A.; Drozdowicz, B.

    2016-04-01

    The segmentation of anatomical and pathological structures plays a key role in the characterization of clinically relevant evidence from digital images. Recently, plenoptic imaging has emerged as a new promise to enrich the diagnostic potential of conventional photography. Since the plenoptic images comprises a set of slightly different versions of the target scene, we propose to make use of those images to improve the segmentation quality in relation to the scenario of a single image segmentation. The problem of finding a segmentation solution from multiple images of a single scene, is called segmentation fusion. This paper reviews the issue of segmentation fusion in order to find solutions that can be applied to plenoptic images, particularly images from the ophthalmological domain.

  7. Diamond-modified AFM probes: from diamond nanowires to atomic force microscopy-integrated boron-doped diamond electrodes.

    PubMed

    Smirnov, Waldemar; Kriele, Armin; Hoffmann, René; Sillero, Eugenio; Hees, Jakob; Williams, Oliver A; Yang, Nianjun; Kranz, Christine; Nebel, Christoph E

    2011-06-15

    In atomic force microscopy (AFM), sharp and wear-resistant tips are a critical issue. Regarding scanning electrochemical microscopy (SECM), electrodes are required to be mechanically and chemically stable. Diamond is the perfect candidate for both AFM probes as well as for electrode materials if doped, due to diamond's unrivaled mechanical, chemical, and electrochemical properties. In this study, standard AFM tips were overgrown with typically 300 nm thick nanocrystalline diamond (NCD) layers and modified to obtain ultra sharp diamond nanowire-based AFM probes and probes that were used for combined AFM-SECM measurements based on integrated boron-doped conductive diamond electrodes. Analysis of the resonance properties of the diamond overgrown AFM cantilevers showed increasing resonance frequencies with increasing diamond coating thicknesses (i.e., from 160 to 260 kHz). The measured data were compared to performed simulations and show excellent correlation. A strong enhancement of the quality factor upon overgrowth was also observed (120 to 710). AFM tips with integrated diamond nanowires are shown to have apex radii as small as 5 nm and where fabricated by selectively etching diamond in a plasma etching process using self-organized metal nanomasks. These scanning tips showed superior imaging performance as compared to standard Si-tips or commercially available diamond-coated tips. The high imaging resolution and low tip wear are demonstrated using tapping and contact mode AFM measurements by imaging ultra hard substrates and DNA. Furthermore, AFM probes were coated with conductive boron-doped and insulating diamond layers to achieve bifunctional AFM-SECM probes. For this, focused ion beam (FIB) technology was used to expose the boron-doped diamond as a recessed electrode near the apex of the scanning tip. Such a modified probe was used to perform proof-of-concept AFM-SECM measurements. The results show that high-quality diamond probes can be fabricated, which are

  8. Denoising portal images by means of wavelet techniques

    NASA Astrophysics Data System (ADS)

    Gonzalez Lopez, Antonio Francisco

    Portal images are used in radiotherapy for the verification of patient positioning. The distinguishing feature of this image type lies in its formation process: the same beam used for patient treatment is used for image formation. The high energy of the photons used in radiotherapy strongly limits the quality of portal images: Low contrast between tissues, low spatial resolution and low signal to noise ratio. This Thesis studies the enhancement of these images, in particular denoising of portal images. The statistical properties of portal images and noise are studied: power spectra, statistical dependencies between image and noise and marginal, joint and conditional distributions in the wavelet domain. Later, various denoising methods are applied to noisy portal images. Methods operating in the wavelet domain are the basis of this Thesis. In addition, the Wiener filter and the non local means filter (NLM), operating in the image domain, are used as a reference. Other topics studied in this Thesis are spatial resolution, wavelet processing and image processing in dosimetry in radiotherapy. In this regard, the spatial resolution of portal imaging systems is studied; a new method for determining the spatial resolution of the imaging equipments in digital radiology is presented; the calculation of the power spectrum in the wavelet domain is studied; reducing uncertainty in film dosimetry is investigated; a method for the dosimetry of small radiation fields with radiochromic film is presented; the optimal signal resolution is determined, as a function of the noise level and the quantization step, in the digitization process of films and the useful optical density range is set, as a function of the required uncertainty level, for a densitometric system. Marginal distributions of portal images are similar to those of natural images. This also applies to the statistical relationships between wavelet coefficients, intra-band and inter-band. These facts result in a better

  9. A comparison of signal processing techniques for Intrinsic Optical Signal imaging in mice.

    PubMed

    Turley, Jordan A; Nilsson, Michael; Walker, Frederick Rohan; Johnson, Sarah J

    2015-01-01

    Intrinsic Optical Signal imaging is a technique which allows the visualisation and mapping of activity related changes within the brain with excellent spatial and temporal resolution. We analysed a variety of signal and image processing techniques applied to real mouse imaging data. The results were compared in an attempt to overcome the unique issues faced when performing the technique on mice and improve the understanding of post processing options available.

  10. LET Spectrum Measurements In CR-39 PNTD With AFM

    SciTech Connect

    Johnson, C. E.; DeWitt, J. M.; Benton, E. R.; Yasuda, N.; Benton, E. V.

    2011-06-01

    Energetic protons, neutrons, and heavy ions undergoing collisions with target nuclei of varying Z can produce residual heavy recoil fragments via intra-nuclear cascade/evaporation reactions. The particles produced in these non-elastic collisions generally have such extremely short range ({approx}<10 {mu}m) that they cannot be directly observed by conventional detection methods including CR-39 plastic nuclear track detector (PNTD) that has been chemically etched for analysis by standard visible light microscopy. However, high-LET recoil fragments having range on the order of several cell diameters can be produced in tissue during radiotherapy using proton and carbon beams. We have developed a method to analyze short-range, high-LET tracks in CR-39 plastic nuclear track detector (PNTD) using short duration chemical etching ({approx}<1 {mu}m) following by automated atomic force microscope (AFM) scanning. The post-scan data processing used in this work was based on semi-automated matrix analysis opposed to traditional grey-scale image analysis. This method takes advantage of the 3-D data obtained via AFM to achieve robust discrimination of nuclear tracks from other features inherently present in the post-etch detector surface. Through automation of AFM scanning, sufficient AFM scan frames were obtained to attain an LET spectrum spanning the LET range from 200-1500 keV/{mu}m. In addition to our experiments, simulations were carried out with the Monte Carlo transport code, FLUKA. To demonstrate this method, CR-39 PNTD was exposed to the proton therapy beam at Loma Linda University Medical Center (LLUMC) at 60 and 230 MeV. Additionally, detectors were exposed to 1 GeV protons at the NASA Space Radiation Laboratory (NSRL) at Brookhaven National Laboratory (BNL). For these exposures CR-39 PNTD, Al and Cu target foils were used between detector layers.

  11. LET Spectrum Measurements In CR-39 PNTD With AFM

    NASA Astrophysics Data System (ADS)

    Johnson, C. E.; DeWitt, J. M.; Benton, E. R.; Yasuda, N.; Benton, E. V.

    2011-06-01

    Energetic protons, neutrons, and heavy ions undergoing collisions with target nuclei of varying Z can produce residual heavy recoil fragments via intra-nuclear cascade/evaporation reactions. The particles produced in these non-elastic collisions generally have such extremely short range (˜<10 μm) that they cannot be directly observed by conventional detection methods including CR-39 plastic nuclear track detector (PNTD) that has been chemically etched for analysis by standard visible light microscopy. However, high-LET recoil fragments having range on the order of several cell diameters can be produced in tissue during radiotherapy using proton and carbon beams. We have developed a method to analyze short-range, high-LET tracks in CR-39 plastic nuclear track detector (PNTD) using short duration chemical etching (˜<1 μm) following by automated atomic force microscope (AFM) scanning. The post-scan data processing used in this work was based on semi-automated matrix analysis opposed to traditional grey-scale image analysis. This method takes advantage of the 3-D data obtained via AFM to achieve robust discrimination of nuclear tracks from other features inherently present in the post-etch detector surface. Through automation of AFM scanning, sufficient AFM scan frames were obtained to attain an LET spectrum spanning the LET range from 200-1500 keV/μm. In addition to our experiments, simulations were carried out with the Monte Carlo transport code, FLUKA. To demonstrate this method, CR-39 PNTD was exposed to the proton therapy beam at Loma Linda University Medical Center (LLUMC) at 60 and 230 MeV. Additionally, detectors were exposed to 1 GeV protons at the NASA Space Radiation Laboratory (NSRL) at Brookhaven National Laboratory (BNL). For these exposures CR-39 PNTD, Al and Cu target foils were used between detector layers.

  12. LET spectrum measurements in Cr-39 PNTD with AFM

    SciTech Connect

    Johnson, Carl Edward; De Witt, Joel M; Benton, Eric R; Yasuda, Nakahiro; Benton, Eugene V

    2010-01-01

    Energetic protons, neutrons, and heavy ions undergoing collisions with target nuclei of varying Z can produce residual heavy recoil fragments via intra-nuclear cascade/evaporation reactions. The particles produced in these non-elastic collisions generally have such extremely short range ({approx}< 10 {mu}m) that they cannot be directly observed by conventional detection methods including CR-39 plastic nuclear track detector (PNTD) that has been chemically etched for analysis by standard visible light microscopy. However, high-LET recoil fragments having range on the order of several cell diameters can be produced in tissue during radiotherapy using proton and carbon beams. We have developed a method to analyze short-range, high-LET tracks in CR-39 plastic nuclear track detector (PNTD) using short duration chemical etching ({approx}< 1 {mu}m) followed by automated atomic force microscope (AFM) scanning. The post-scan data processing used in this work was based on semi-automated matrix analysis opposed to traditional grey-scale image analysis. This method takes advantage of the 3-D data obtained via AFM to achieve robust discrimination of nuclear tracks from other features. Through automation of AFM scanning, sufficient AFM scan frames were obtained to attain an LET spectrum spanning the LET range from 200-1500 keV/{mu}m. In addition to our experiments, simulations were carried out with the Monte Carlo transport code, FLUKA. To demonstrate this method, CR-39 PNTD was exposed to the proton therapy beam at Loma Linda University Medical Center (LLUMC) at 60 and 230 MeV. Additionally, detectors were exposed to I GeV protons at the NASA Space Radiation Laboratory (NSRL) at Brookhaven National Laboratory (BNL). For these exposures CR-39 PNTD, Al and Cu target foils were used between detector layers.

  13. Imaging techniques in digital forensic investigation: a study using neural networks

    NASA Astrophysics Data System (ADS)

    Williams, Godfried

    2006-09-01

    Imaging techniques have been applied to a number of applications, such as translation and classification problems in medicine and defence. This paper examines the application of imaging techniques in digital forensics investigation using neural networks. A review of applications of digital image processing is presented, whiles a Pedagogical analysis of computer forensics is also highlighted. A data set describing selected images in different forms are used in the simulation and experimentation.

  14. Multi technique amalgamation for enhanced information identification with content based image data.

    PubMed

    Das, Rik; Thepade, Sudeep; Ghosh, Saurav

    2015-01-01

    Image data has emerged as a resourceful foundation for information with proliferation of image capturing devices and social media. Diverse applications of images in areas including biomedicine, military, commerce, education have resulted in huge image repositories. Semantically analogous images can be fruitfully recognized by means of content based image identification. However, the success of the technique has been largely dependent on extraction of robust feature vectors from the image content. The paper has introduced three different techniques of content based feature extraction based on image binarization, image transform and morphological operator respectively. The techniques were tested with four public datasets namely, Wang Dataset, Oliva Torralba (OT Scene) Dataset, Corel Dataset and Caltech Dataset. The multi technique feature extraction process was further integrated for decision fusion of image identification to boost up the recognition rate. Classification result with the proposed technique has shown an average increase of 14.5 % in Precision compared to the existing techniques and the retrieval result with the introduced technique has shown an average increase of 6.54 % in Precision over state-of-the art techniques. PMID:26798574

  15. Multi technique amalgamation for enhanced information identification with content based image data.

    PubMed

    Das, Rik; Thepade, Sudeep; Ghosh, Saurav

    2015-01-01

    Image data has emerged as a resourceful foundation for information with proliferation of image capturing devices and social media. Diverse applications of images in areas including biomedicine, military, commerce, education have resulted in huge image repositories. Semantically analogous images can be fruitfully recognized by means of content based image identification. However, the success of the technique has been largely dependent on extraction of robust feature vectors from the image content. The paper has introduced three different techniques of content based feature extraction based on image binarization, image transform and morphological operator respectively. The techniques were tested with four public datasets namely, Wang Dataset, Oliva Torralba (OT Scene) Dataset, Corel Dataset and Caltech Dataset. The multi technique feature extraction process was further integrated for decision fusion of image identification to boost up the recognition rate. Classification result with the proposed technique has shown an average increase of 14.5 % in Precision compared to the existing techniques and the retrieval result with the introduced technique has shown an average increase of 6.54 % in Precision over state-of-the art techniques.

  16. An accurate scatter measurement and correction technique for cone beam breast CT imaging using scanning sampled measurement (SSM)technique

    NASA Astrophysics Data System (ADS)

    Liu, Xinming; Shaw, Chris C.; Wang, Tianpeng; Chen, Lingyun; Altunbas, Mustafa C.; Kappadath, S. Cheenu

    2006-03-01

    We developed and investigated a scanning sampled measurement (SSM) technique for scatter measurement and correction in cone beam breast CT imaging. A cylindrical polypropylene phantom (water equivalent) was mounted on a rotating table in a stationary gantry experimental cone beam breast CT imaging system. A 2-D array of lead beads, with the beads set apart about ~1 cm from each other and slightly tilted vertically, was placed between the object and x-ray source. A series of projection images were acquired as the phantom is rotated 1 degree per projection view and the lead beads array shifted vertically from one projection view to the next. A series of lead bars were also placed at the phantom edge to produce better scatter estimation across the phantom edges. Image signals in the lead beads/bars shadow were used to obtain sampled scatter measurements which were then interpolated to form an estimated scatter distribution across the projection images. The image data behind the lead bead/bar shadows were restored by interpolating image data from two adjacent projection views to form beam-block free projection images. The estimated scatter distribution was then subtracted from the corresponding restored projection image to obtain the scatter removed projection images. Our preliminary experiment has demonstrated that it is feasible to implement SSM technique for scatter estimation and correction for cone beam breast CT imaging. Scatter correction was successfully performed on all projection images using scatter distribution interpolated from SSM and restored projection image data. The resultant scatter corrected projection image data resulted in elevated CT number and largely reduced the cupping effects.

  17. Technique of diffusion weighted imaging and its application in stroke

    NASA Astrophysics Data System (ADS)

    Li, Enzhong; Tian, Jie; Han, Ying; Wang, Huifang; Li, Wu; He, Huiguang

    2003-05-01

    To study the application of diffusion weighted imaging and image post processing in the diagnosis of stroke, especially in acute stroke, 205 patients were examined by 1.5 T or 1.0 T MRI scanner and the images such as T1, T2 and diffusion weighted images were obtained. Image post processing was done with "3D Med System" developed by our lab to analyze data and acquire the apparent diffusion coefficient (ADC) map. In acute and subacute stage of stroke, the signal in cerebral infarction areas changed to hyperintensity in T2- and diffusion-weighted images, normal or hypointensity in T1-weighted images. In hyperacute stage, however, the signal was hyperintense just in the diffusion weighted imaes; others were normal. In the chronic stage, the signal in T1- and diffusion-weighted imaging showed hypointensity and hyperintensity in T2 weighted imaging. Because ADC declined obviously in acute and subacute stage of stroke, the lesion area was hypointensity in ADC map. With the development of the disease, ADC gradually recovered and then changed to hyperintensity in ADC map in chronic stage. Using diffusion weighted imaging and ADC mapping can make a diagnosis of stroke, especially in the hyperacute stage of stroke, and can differentiate acute and chronic stroke.

  18. Three-dimensional radar imaging techniques and systems for near-field applications

    NASA Astrophysics Data System (ADS)

    Sheen, David M.; Hall, Thomas E.; McMakin, Douglas L.; Jones, A. Mark; Tedeschi, Jonathan R.

    2016-05-01

    The Pacific Northwest National Laboratory has developed three-dimensional holographic (synthetic aperture) radar imaging techniques and systems for a wide variety of near-field applications. These applications include radar crosssection (RCS) imaging, personnel screening, standoff concealed weapon detection, concealed threat detection, throughbarrier imaging, ground penetrating radar (GPR), and non-destructive evaluation (NDE). Sequentially-switched linear arrays are used for many of these systems to enable high-speed data acquisition and 3-D imaging. In this paper, the techniques and systems will be described along with imaging results that demonstrate the utility of near-field 3-D radar imaging for these compelling applications.

  19. Hydration states of AFm cement phases

    SciTech Connect

    Baquerizo, Luis G.; Matschei, Thomas; Scrivener, Karen L.; Saeidpour, Mahsa; Wadsö, Lars

    2015-07-15

    The AFm phase, one of the main products formed during the hydration of Portland and calcium aluminate cement based systems, belongs to the layered double hydrate (LDH) family having positively charged layers and water plus charge-balancing anions in the interlayer. It is known that these phases present different hydration states (i.e. varying water content) depending on the relative humidity (RH), temperature and anion type, which might be linked to volume changes (swelling and shrinkage). Unfortunately the stability conditions of these phases are insufficiently reported. This paper presents novel experimental results on the different hydration states of the most important AFm phases: monocarboaluminate, hemicarboaluminate, strätlingite, hydroxy-AFm and monosulfoaluminate, and the thermodynamic properties associated with changes in their water content during absorption/desorption. This data opens the possibility to model the response of cementitious systems during drying and wetting and to engineer systems more resistant to harsh external conditions.

  20. Content based image retrieval using local binary pattern operator and data mining techniques.

    PubMed

    Vatamanu, Oana Astrid; Frandeş, Mirela; Lungeanu, Diana; Mihalaş, Gheorghe-Ioan

    2015-01-01

    Content based image retrieval (CBIR) concerns the retrieval of similar images from image databases, using feature vectors extracted from images. These feature vectors globally define the visual content present in an image, defined by e.g., texture, colour, shape, and spatial relations between vectors. Herein, we propose the definition of feature vectors using the Local Binary Pattern (LBP) operator. A study was performed in order to determine the optimum LBP variant for the general definition of image feature vectors. The chosen LBP variant is then subsequently used to build an ultrasound image database, and a database with images obtained from Wireless Capsule Endoscopy. The image indexing process is optimized using data clustering techniques for images belonging to the same class. Finally, the proposed indexing method is compared to the classical indexing technique, which is nowadays widely used.

  1. Motion artifact reduction technique for dual-contrast FSE imaging.

    PubMed

    Kholmovski, Eugene G; Samsonov, Alexei A; Parker, Dennis L

    2002-07-01

    There is considerable similarity between proton density-weighted (PDw) and T2-weighted (T2w) images acquired by dual-contrast fast spin-echo (FSE) sequences. The similarity manifests itself in image space as consistency between the phases of PDw and T2w images and in k-space as correspondence between PDw and T2w k-space data. A method for motion artifact reduction for dual-contrast FSE imaging has been developed. The method uses projection onto convex sets (POCS) formalism and is based on image space phase consistency and the k-space similarity between PDw and T2w images. When coupled with a modified dual-contrast FSE phase encoding scheme the method can yield considerable artifact reduction, as long as less than half of the acquired data is corrupted by motion. The feasibility and efficiency of the developed method were demonstrated using phantom and human MRI data.

  2. Facial nerve image enhancement from CBCT using supervised learning technique.

    PubMed

    Ping Lu; Barazzetti, Livia; Chandran, Vimal; Gavaghan, Kate; Weber, Stefan; Gerber, Nicolas; Reyes, Mauricio

    2015-08-01

    Facial nerve segmentation plays an important role in surgical planning of cochlear implantation. Clinically available CBCT images are used for surgical planning. However, its relatively low resolution renders the identification of the facial nerve difficult. In this work, we present a supervised learning approach to enhance facial nerve image information from CBCT. A supervised learning approach based on multi-output random forest was employed to learn the mapping between CBCT and micro-CT images. Evaluation was performed qualitatively and quantitatively by using the predicted image as input for a previously published dedicated facial nerve segmentation, and cochlear implantation surgical planning software, OtoPlan. Results show the potential of the proposed approach to improve facial nerve image quality as imaged by CBCT and to leverage its segmentation using OtoPlan. PMID:26736914

  3. A statistical watermark detection technique without using original images for resolving rightful ownerships of digital images.

    PubMed

    Zeng, W; Liu, B

    1999-01-01

    Digital watermarking has been proposed as the means for copyright protection of multimedia data. Many of existing watermarking schemes focused on the robust means to mark an image invisibly without really addressing the ends of these schemes. This paper first discusses some scenarios in which many current watermarking schemes fail to resolve the rightful ownership of an image. The key problems are then identified, and some crucial requirements for a valid invisible watermark detection are discussed. In particular, we show that, for the particular application of resolving rightful ownership using invisible watermarks, it might be crucial to require that the original image not be directly involved in the watermark detection process. A general framework for validly detecting the invisible watermarks is then proposed. Some requirements on the claimed signature/watermarks to be used for detection are discussed to prevent the existence of any counterfeit scheme. The optimal detection strategy within the framework is derived. We show the effectiveness of this technique based on some visual-model-based watermark encoding schemes. PMID:18267429

  4. Automatic stent strut detection in intravascular OCT images using image processing and classification technique

    NASA Astrophysics Data System (ADS)

    Lu, Hong; Gargesha, Madhusudhana; Wang, Zhao; Chamie, Daniel; Attizani, Guilherme F.; Kanaya, Tomoaki; Ray, Soumya; Costa, Marco A.; Rollins, Andrew M.; Bezerra, Hiram G.; Wilson, David L.

    2013-02-01

    Intravascular OCT (iOCT) is an imaging modality with ideal resolution and contrast to provide accurate in vivo assessments of tissue healing following stent implantation. Our Cardiovascular Imaging Core Laboratory has served >20 international stent clinical trials with >2000 stents analyzed. Each stent requires 6-16hrs of manual analysis time and we are developing highly automated software to reduce this extreme effort. Using classification technique, physically meaningful image features, forward feature selection to limit overtraining, and leave-one-stent-out cross validation, we detected stent struts. To determine tissue coverage areas, we estimated stent "contours" by fitting detected struts and interpolation points from linearly interpolated tissue depths to a periodic cubic spline. Tissue coverage area was obtained by subtracting lumen area from the stent area. Detection was compared against manual analysis of 40 pullbacks. We obtained recall = 90+/-3% and precision = 89+/-6%. When taking struts deemed not bright enough for manual analysis into consideration, precision improved to 94+/-6%. This approached inter-observer variability (recall = 93%, precision = 96%). Differences in stent and tissue coverage areas are 0.12 +/- 0.41 mm2 and 0.09 +/- 0.42 mm2, respectively. We are developing software which will enable visualization, review, and editing of automated results, so as to provide a comprehensive stent analysis package. This should enable better and cheaper stent clinical trials, so that manufacturers can optimize the myriad of parameters (drug, coverage, bioresorbable versus metal, etc.) for stent design.

  5. Innovative techniques, sensors, and approaches for imaging biofilms at different scales.

    PubMed

    Neu, Thomas R; Lawrence, John R

    2015-04-01

    Confocal laser scanning microscopy has become a standard technique for the investigation of hydrated interfacial microbial communities at the microscale. Multiphoton and spinning-disk microscopes provide new options for in situ imaging. Progress has been made in imaging structural aspects as well as interactions and processes. Advanced fluorescence techniques such as lifetime imaging and correlation spectroscopy are also available. Newly developed target-specific probes allow investigation of new aspects of microbial communities. Several new laser-based techniques are available including nanoscopy and mesoscale techniques. Nanoscopy techniques offer access to unprecedented resolution of hydrated microbiological samples at the scale of fluorescent gene products and macromolecules. Mesoscale approaches are important to address larger features and statistical issues of microbiological samples. This review presents the state of the art in situ biofilm imaging and assesses the pros and cons of laser-based imaging techniques in combination with a variety of sensor types at different scales.

  6. Evaluating fusion techniques for multi-sensor satellite image data

    SciTech Connect

    Martin, Benjamin W; Vatsavai, Raju

    2013-01-01

    Satellite image data fusion is a topic of interest in many areas including environmental monitoring, emergency response, and defense. Typically any single satellite sensor cannot provide all of the benefits offered by a combination of different sensors (e.g., high-spatial but low spectral resolution vs. low-spatial but high spectral, optical vs. SAR). Given the respective strengths and weaknesses of the different types of image data, it is beneficial to fuse many types of image data to extract as much information as possible from the data. Our work focuses on the fusion of multi-sensor image data into a unified representation that incorporates the potential strengths of a sensor in order to minimize classification error. Of particular interest is the fusion of optical and synthetic aperture radar (SAR) images into a single, multispectral image of the best possible spatial resolution. We explore various methods to optimally fuse these images and evaluate the quality of the image fusion by using K-means clustering to categorize regions in the fused images and comparing the accuracies of the resulting categorization maps.

  7. Capillary telangiectasia of the brain: imaging with various magnetic resonance techniques.

    PubMed

    Gelal, F; Karakaş, L; Sarsilmaz, A; Yücel, K; Dündar, C; Apaydin, M

    2014-01-01

    Brain capillary telangiectasia is an incidental vascular malformation found usually in pons and sometimes in extra- pontine sites. Typical MRI features are enhancement on post contrast T1 weighted images and signal loss on gradient echo images. We evaluated 10 patients with various MR techniques. Susceptibility weighted imaging was superior to GRE T2 in showing decreased signal due to susceptibility effects. Diffusion weighted imaging and diffusion tensor imaging proved not useful in the diagnosis.

  8. Fabrication of cone-shaped boron doped diamond and gold nanoelectrodes for AFM-SECM

    NASA Astrophysics Data System (ADS)

    Avdic, A.; Lugstein, A.; Wu, M.; Gollas, B.; Pobelov, I.; Wandlowski, T.; Leonhardt, K.; Denuault, G.; Bertagnolli, E.

    2011-04-01

    We demonstrate a reliable microfabrication process for a combined atomic force microscopy (AFM) and scanning electrochemical microscopy (SECM) measurement tool. Integrated cone-shaped sensors with boron doped diamond (BDD) or gold (Au) electrodes were fabricated from commercially available AFM probes. The sensor formation process is based on mature semiconductor processing techniques, including focused ion beam (FIB) machining, and highly selective reactive ion etching (RIE). The fabrication approach preserves the geometry of the original AFM tips resulting in well reproducible nanoscaled sensors. The feasibility and functionality of the fully featured tips are demonstrated by cyclic voltammetry, showing good agreement between the measured and calculated currents of the cone-shaped AFM-SECM electrodes.

  9. Fabrication of cone-shaped boron doped diamond and gold nanoelectrodes for AFM-SECM.

    PubMed

    Avdic, A; Lugstein, A; Wu, M; Gollas, B; Pobelov, I; Wandlowski, T; Leonhardt, K; Denuault, G; Bertagnolli, E

    2011-04-01

    We demonstrate a reliable microfabrication process for a combined atomic force microscopy (AFM) and scanning electrochemical microscopy (SECM) measurement tool. Integrated cone-shaped sensors with boron doped diamond (BDD) or gold (Au) electrodes were fabricated from commercially available AFM probes. The sensor formation process is based on mature semiconductor processing techniques, including focused ion beam (FIB) machining, and highly selective reactive ion etching (RIE). The fabrication approach preserves the geometry of the original AFM tips resulting in well reproducible nanoscaled sensors. The feasibility and functionality of the fully featured tips are demonstrated by cyclic voltammetry, showing good agreement between the measured and calculated currents of the cone-shaped AFM-SECM electrodes.

  10. Fabrication of cone-shaped boron doped diamond and gold nanoelectrodes for AFM-SECM.

    PubMed

    Avdic, A; Lugstein, A; Wu, M; Gollas, B; Pobelov, I; Wandlowski, T; Leonhardt, K; Denuault, G; Bertagnolli, E

    2011-04-01

    We demonstrate a reliable microfabrication process for a combined atomic force microscopy (AFM) and scanning electrochemical microscopy (SECM) measurement tool. Integrated cone-shaped sensors with boron doped diamond (BDD) or gold (Au) electrodes were fabricated from commercially available AFM probes. The sensor formation process is based on mature semiconductor processing techniques, including focused ion beam (FIB) machining, and highly selective reactive ion etching (RIE). The fabrication approach preserves the geometry of the original AFM tips resulting in well reproducible nanoscaled sensors. The feasibility and functionality of the fully featured tips are demonstrated by cyclic voltammetry, showing good agreement between the measured and calculated currents of the cone-shaped AFM-SECM electrodes. PMID:21368355

  11. AFM and electroanalytical studies of synthetic oligonucleotide hybridization.

    PubMed

    Chiorcea Paquim, A-M; Diculescu, V C; Oretskaya, T S; Oliveira Brett, A M

    2004-11-15

    The first and most important step in the development and manufacture of a sensitive DNA-biosensor for hybridization detection is the immobilization procedure of the nucleic acid probe on the transducer surface, maintaining its mobility and conformational flexibility. MAC Mode AFM images were used to demonstrate that oligonucleotide (ODN) molecules adsorb spontaneously at the electrode surface. After adsorption, the ODN layers were formed by molecules with restricted mobility, as well as by superposed molecules, which can lead to reduced hybridization efficiency. The images also showed the existence of pores in the adsorbed ODN film that revealed large parts of the electrode surface, and enabled non-specific adsorption of other ODNs on the uncovered areas. Electrostatic immobilization onto a clean glassy carbon electrode surface was followed by hybridization with complementary sequences and by control experiments with non-complementary sequences, studied using differential pulse voltammetry. The data obtained showed that non-specific adsorption strongly influenced the results, which depended on the sequence of the ODNs. In order to reduce the contribution of non-specific adsorbed ODNs during hybridization experiments, the carbon electrode surface was modified. After modification, the AFM images showed an electrode completely covered by the ODN probe film, which prevented the undesirable binding of target ODN molecules to the electrode surface. The changes of interfacial capacitance that took place after hybridization or control experiments showed the formation of a mixed multilayer that strongly depended on the local environment of the immobilized ODN.

  12. Comparison Of Image Display Techniques For Solid Models In Medical Imaging

    NASA Astrophysics Data System (ADS)

    Wood, Sally L.; Fellingham, Linda L.; Massicotte, Jean B.; Dev, Parvati

    1985-09-01

    Presenting three-dimensional information in the form of 3D solid models rather than as a sequence of two-dimensional intensity images provides many benefits in presurgical planning and diagnostic radiography. Although the model generation process does not add information to the sequential slice data, it does present images of organs and bony structures in a form more like the expected view of solid objects in natural scenes. Surface shapes and details of surface variations, which would require practiced observation of two-dimensional intensity data, are readily visible in the solid model displays making this information immediately available to a broad cross section of medical personnel. After a year of experience with a commercially available system, a Contour Medical Systems CEMAX-l000, which accepts input from several CT or MR scanner models and provides basic solid model displays, additional types of solid model viewing have been made available to clinical personnel for preliminary evaluation. The advantages and disadvantages in terms of subjective display quality, information content, and computational cost of several display methods have been investigated. Display of solid models by range encoding, heuristic mappings of intensity levels, and complete reflectance models have been compared for black-and-white and monochromatic color images. The option of displaying multiple objects in contrasting colors both as opaque and transparent objects has also been tested. Methods of surface acquisition from the two-dimensional data have been varied to match the material of interest and the characteristics of the original intensity data allowing improved representation of soft tissue. Finally, the utility of several types of time varying imagery is discussed, including the advantages of viewing rotating solid objects compared to viewing a collage of still pictures in many orientations. Some clinical examples of these experimental image display techniques are presented

  13. Imaging techniques for prostate cancer: implications for focal therapy

    PubMed Central

    Turkbey, Baris; Pinto, Peter A.; Choyke, Peter L.

    2012-01-01

    The multifocal nature of prostate cancer has necessitated whole-gland therapy in the past; however, since the widespread use of PSA screening, patients frequently present with less-advanced disease. Many men with localized disease wish to avoid the adverse effects of whole-gland therapy; therefore, focal therapy for prostate cancer is being considered as a treatment option. For focal treatment to be viable, accurate imaging is required for diagnosis, staging, and monitoring of treatment. Developments in MRI and PET have brought more attention to prostate imaging and the possibility of improving the accuracy of focal therapy. In this Review, we discuss the advantages and disadvantages of conventional methods for imaging the prostate, new developments for targeted imaging, and the possible role of image-guided biopsy and therapy for localized prostate cancer. PMID:19352394

  14. Watermarking techniques used in medical images: a survey.

    PubMed

    Mousavi, Seyed Mojtaba; Naghsh, Alireza; Abu-Bakar, S A R

    2014-12-01

    The ever-growing numbers of medical digital images and the need to share them among specialists and hospitals for better and more accurate diagnosis require that patients' privacy be protected. As a result of this, there is a need for medical image watermarking (MIW). However, MIW needs to be performed with special care for two reasons. Firstly, the watermarking procedure cannot compromise the quality of the image. Secondly, confidential patient information embedded within the image should be flawlessly retrievable without risk of error after image decompressing. Despite extensive research undertaken in this area, there is still no method available to fulfill all the requirements of MIW. This paper aims to provide a useful survey on watermarking and offer a clear perspective for interested researchers by analyzing the strengths and weaknesses of different existing methods.

  15. New technique for enhancement of high dynamic range infrared images

    NASA Astrophysics Data System (ADS)

    Liu, Yu; Wang, Xin-sai; Xu, Hualiang; He, Ming; Li, Mingming

    2012-10-01

    A Bilateral Filter (BF) and Multi-scale Retinex (MSR) based infrared image enhancement algorithm is proposed in this paper. It's known that the MSR algorithm derived from vision theory can achieve dynamic range compression and tonal rendition effectively but suffers from `halo' phenomena caused by the existence of "sharp" edges in infrared images. Research shows that bilateral filter has the property of separating image details from strong edges. Therefore, we process detail components containing strong edges in MSR algorithm with bilateral filter to achieve dynamic range compression, detail enhancement and avoid `halo' artifacts at the same time. The performance of proposed algorithm is then validated by experiments with three real infrared images and compared with other two infrared images enhancement algorithms.

  16. Adaptive enhancement and visualization techniques for 3D THz images of breast cancer tumors

    NASA Astrophysics Data System (ADS)

    Wu, Yuhao; Bowman, Tyler; Gauch, John; El-Shenawee, Magda

    2016-03-01

    This paper evaluates image enhancement and visualization techniques for pulsed terahertz (THz) images of tissue samples. Specifically, our research objective is to effectively differentiate between heterogeneous regions of breast tissues that contain tumors diagnosed as triple negative infiltrating ductal carcinoma (IDC). Tissue slices and blocks of varying thicknesses were prepared and scanned using our lab's THz pulsed imaging system. One of the challenges we have encountered in visualizing the obtained images and differentiating between healthy and cancerous regions of the tissues is that most THz images have a low level of details and narrow contrast, making it difficult to accurately identify and visualize the margins around the IDC. To overcome this problem, we have applied and evaluated a number of image processing techniques to the scanned 3D THz images. In particular, we employed various spatial filtering and intensity transformation techniques to emphasize the small details in the images and adjust the image contrast. For each of these methods, we investigated how varying filter sizes and parameters affect the amount of enhancement applied to the images. Our experimentation shows that several image processing techniques are effective in producing THz images of breast tissue samples that contain distinguishable details, making further segmentation of the different image regions promising.

  17. Techniques for identifying dust devils in mars pathfinder images

    USGS Publications Warehouse

    Metzger, S.M.; Carr, J.R.; Johnson, J. R.; Parker, T.J.; Lemmon, M.T.

    2000-01-01

    Image processing methods used to identify and enhance dust devil features imaged by IMP (Imager for Mars Pathfinder) are reviewed. Spectral differences, visible red minus visible blue, were used for initial dust devil searches, driven by the observation that Martian dust has high red and low blue reflectance. The Martian sky proved to be more heavily dust-laden than pre-Pathfinder predictions, based on analysis of images from the Hubble Space Telescope. As a result, these initial spectral difference methods failed to contrast dust devils with background dust haze. Imager artifacts (dust motes on the camera lens, flat-field effects caused by imperfections in the CCD, and projection onto a flat sensor plane by a convex lens) further impeded the ability to resolve subtle dust devil features. Consequently, reference images containing sky with a minimal horizon were first subtracted from each spectral filter image to remove camera artifacts and reduce the background dust haze signal. Once the sky-flat preprocessing step was completed, the red-minus-blue spectral difference scheme was attempted again. Dust devils then were successfully identified as bright plumes. False-color ratios using calibrated IMP images were found useful for visualizing dust plumes, verifying initial discoveries as vortex-like features. Enhancement of monochromatic (especially blue filter) images revealed dust devils as silhouettes against brighter background sky. Experiments with principal components transformation identified dust devils in raw, uncalibrated IMP images and further showed relative movement of dust devils across the Martian surface. A variety of methods therefore served qualitative and quantitative goals for dust plume identification and analysis in an environment where such features are obscure.

  18. PREFACE: NC-AFM 2005: Proceedings of the 8th International Conference on Non-Contact Atomic Force Microscopy

    NASA Astrophysics Data System (ADS)

    Reichling, M.; Mikosch, W.

    2006-04-01

    The 8th International Conference on Non-Contact Atomic Force Microscopy, held in Bad Essen, Germany, from 15 18th August 2005, attracted a record breaking number of participants presenting excellent contributions from a variety of scientific fields. This clearly demonstrated the high level of activity and innovation present in the community of NC-AFM researchers and the continuous growth of the field. The strongest ever participation of companies for a NC-AFM meeting is a sign for the emergence of new markets for the growing NC-AFM community; and the high standard of the products presented at the exhibition, many of them brand-new developments, reflected the unbroken progress in technology. The development of novel technologies and the sophistication of known techniques in research laboratories and their subsequent commercialization is still a major driving force for progress in this area of nanoscience. The conference was a perfect demonstration of how progress in the development of enabling technologies can readily be transcribed into basic research yielding fundamental insight with an impact across disciplines. The NC-AFM 2005 scientific programme was based on five cornerstones, each representing an area of vivid research and scientific progress. Atomic resolution imaging on oxide surfaces, which has long been a vision for the catalysis community, appears to be routine in several laboratories and after a period of demonstrative experiments NC-AFM now makes unique contributions to the understanding of processes in surface chemistry. These capabilities also open up new routes for the analysis of clusters and molecules deposited on dielectric surfaces where resolution limits are pushed towards the single atom level. Atomic precision manipulation with the dynamic AFM left the cradle of its infancy and flourishes in the family of bottom-up fabrication nanotechnologies. The systematic development of established and the introduction of new concepts of contrast

  19. Quantitative validation of 3D image registration techniques

    NASA Astrophysics Data System (ADS)

    Holton Tainter, Kerrie S.; Taneja, Udita; Robb, Richard A.

    1995-05-01

    Multimodality images obtained from different medical imaging systems such as magnetic resonance (MR), computed tomography (CT), ultrasound (US), positron emission tomography (PET), single photon emission computed tomography (SPECT) provide largely complementary characteristic or diagnostic information. Therefore, it is an important research objective to `fuse' or combine this complementary data into a composite form which would provide synergistic information about the objects under examination. An important first step in the use of complementary fused images is 3D image registration, where multi-modality images are brought into spatial alignment so that the point-to-point correspondence between image data sets is known. Current research in the field of multimodality image registration has resulted in the development and implementation of several different registration algorithms, each with its own set of requirements and parameters. Our research has focused on the development of a general paradigm for measuring, evaluating and comparing the performance of different registration algorithms. Rather than evaluating the results of one algorithm under a specific set of conditions, we suggest a general approach to validation using simulation experiments, where the exact spatial relationship between data sets is known, along with phantom data, to characterize the behavior of an algorithm via a set of quantitative image measurements. This behavior may then be related to the algorithm's performance with real patient data, where the exact spatial relationship between multimodality images is unknown. Current results indicate that our approach is general enough to apply to several different registration algorithms. Our methods are useful for understanding the different sources of registration error and for comparing the results between different algorithms.

  20. New Agents and Techniques for Imaging Prostate Cancer

    PubMed Central

    Zaheer, Atif; Cho, Steve Y.; Pomper, Martin G.

    2012-01-01

    The successful management of prostate cancer requires early detection, appropriate risk assessment, and optimum treatment. An unmet goal of prostate cancer imaging is to differentiate indolent from aggressive tumors, as treatment may vary for different grades of the disease. Different modalities have been tested to diagnose, stage, and monitor prostate cancer during therapy. This review briefly describes the key clinical issues in prostate cancer imaging and therapy and summarizes the various new imaging modalities and agents in use and on the horizon. PMID:19690043

  1. Recent Progress in Molecular Recognition Imaging Using Atomic Force Microscopy.

    PubMed

    Senapati, Subhadip; Lindsay, Stuart

    2016-03-15

    Atomic force microscopy (AFM) is an extremely powerful tool in the field of bionanotechnology because of its ability to image single molecules and make measurements of molecular interaction forces with piconewton sensitivity. It works in aqueous media, enabling studies of molecular phenomenon taking place under physiological conditions. Samples can be imaged in their near-native state without any further modifications such as staining or tagging. The combination of AFM imaging with the force measurement added a new feature to the AFM technique, that is, molecular recognition imaging. Molecular recognition imaging enables mapping of specific interactions between two molecules (one attached to the AFM tip and the other to the imaging substrate) by generating simultaneous topography and recognition images (TREC). Since its discovery, the recognition imaging technique has been successfully applied to different systems such as antibody-protein, aptamer-protein, peptide-protein, chromatin, antigen-antibody, cells, and so forth. Because the technique is based on specific binding between the ligand and receptor, it has the ability to detect a particular protein in a mixture of proteins or monitor a biological phenomenon in the native physiological state. One key step for recognition imaging technique is the functionalization of the AFM tips (generally, silicon, silicon nitrides, gold, etc.). Several different functionalization methods have been reported in the literature depending on the molecules of interest and the material of the tip. Polyethylene glycol is routinely used to provide flexibility needed for proper binding as a part of the linker that carries the affinity molecule. Recently, a heterofunctional triarm linker has been synthesized and successfully attached with two different affinity molecules. This novel linker, when attached to AFM tip, helped to detect two different proteins simultaneously from a mixture of proteins using a so-called "two

  2. Radar, signal, and image processing techniques for through the wall imaging (Keynote Paper)

    NASA Astrophysics Data System (ADS)

    Amin, Moeness G.

    2005-06-01

    In this paper, we discuss some of the leading issues in through the wall radar imaging (TWRI) problems. We focus on the primary system challenges and deliverables, dealing only with the applications of statistical signal and array processing. Applications of antenna design and electromagnetic propagation are equally important, but they are both outside the scope of this paper. The material presented considers key desirable TWRI system properties and features and provides candidate solutions to achieve them. We focus on research performed at Villanova University and demonstrate some of our recent approaches to address system functionalities and requirements using analyses, computer simulations, and real-data. The paper does not attempt to cover all progress made in the field to date nor does it intend to compare the proposed techniques with alternative and competitive methods. It is written with the primary purpose of bringing to the reader many leading challenges and diverse issues worthy of considerations.

  3. Subcellular chemical and morphological analysis by stimulated Raman scattering microscopy and image analysis techniques.

    PubMed

    D'Arco, Annalisa; Brancati, Nadia; Ferrara, Maria Antonietta; Indolfi, Maurizio; Frucci, Maria; Sirleto, Luigi

    2016-05-01

    The visualization of heterogeneous morphology, segmentation and quantification of image features is a crucial point for nonlinear optics microscopy applications, spanning from imaging of living cells or tissues to biomedical diagnostic. In this paper, a methodology combining stimulated Raman scattering microscopy and image analysis technique is presented. The basic idea is to join the potential of vibrational contrast of stimulated Raman scattering and the strength of imaging analysis technique in order to delineate subcellular morphology with chemical specificity. Validation tests on label free imaging of polystyrene-beads and of adipocyte cells are reported and discussed. PMID:27231626

  4. Subcellular chemical and morphological analysis by stimulated Raman scattering microscopy and image analysis techniques

    PubMed Central

    D’Arco, Annalisa; Brancati, Nadia; Ferrara, Maria Antonietta; Indolfi, Maurizio; Frucci, Maria; Sirleto, Luigi

    2016-01-01

    The visualization of heterogeneous morphology, segmentation and quantification of image features is a crucial point for nonlinear optics microscopy applications, spanning from imaging of living cells or tissues to biomedical diagnostic. In this paper, a methodology combining stimulated Raman scattering microscopy and image analysis technique is presented. The basic idea is to join the potential of vibrational contrast of stimulated Raman scattering and the strength of imaging analysis technique in order to delineate subcellular morphology with chemical specificity. Validation tests on label free imaging of polystyrene-beads and of adipocyte cells are reported and discussed. PMID:27231626

  5. Subcellular chemical and morphological analysis by stimulated Raman scattering microscopy and image analysis techniques.

    PubMed

    D'Arco, Annalisa; Brancati, Nadia; Ferrara, Maria Antonietta; Indolfi, Maurizio; Frucci, Maria; Sirleto, Luigi

    2016-05-01

    The visualization of heterogeneous morphology, segmentation and quantification of image features is a crucial point for nonlinear optics microscopy applications, spanning from imaging of living cells or tissues to biomedical diagnostic. In this paper, a methodology combining stimulated Raman scattering microscopy and image analysis technique is presented. The basic idea is to join the potential of vibrational contrast of stimulated Raman scattering and the strength of imaging analysis technique in order to delineate subcellular morphology with chemical specificity. Validation tests on label free imaging of polystyrene-beads and of adipocyte cells are reported and discussed.

  6. Video polarimetry: a new imaging technique in atmospheric science

    SciTech Connect

    Prosch, T.; Hennings, D.; Raschke, E.

    1983-05-01

    An imaging polarimeter has been built to study the polarization of solar radiation (lambda = 550 nm) scattered and reflected from the natural environment. The instrument generates false color images as multiparameter display of the degree of polarization, azimuth of polarization, and the radiance. These video signals can be digitized into a computer-compatible format. As an example of application, the polarization properties of light reflected from a lake and its environment are discussed here.

  7. Multispectral image sharpening using wavelet transform techniques and spatial correlation of edges

    USGS Publications Warehouse

    Lemeshewsky, George P.; Schowengerdt, Robert A.

    2000-01-01

    Several reported image fusion or sharpening techniques are based on the discrete wavelet transform (DWT). The technique described here uses a pixel-based maximum selection rule to combine respective transform coefficients of lower spatial resolution near-infrared (NIR) and higher spatial resolution panchromatic (pan) imagery to produce a sharpened NIR image. Sharpening assumes a radiometric correlation between the spectral band images. However, there can be poor correlation, including edge contrast reversals (e.g., at soil-vegetation boundaries), between the fused images and, consequently, degraded performance. To improve sharpening, a local area-based correlation technique originally reported for edge comparison with image pyramid fusion is modified for application with the DWT process. Further improvements are obtained by using redundant, shift-invariant implementation of the DWT. Example images demonstrate the improvements in NIR image sharpening with higher resolution pan imagery.

  8. [Update on cardiac imaging techniques. Echocardiography, cardiac magnetic resonance and multidetector computed tomography].

    PubMed

    de Vinuesa, Pastora Gallego García; del Castillo, Sonia Velasco; Torres, Río Aguilar; Bardera, Juan C Paré

    2008-02-01

    This review of progress in cardiac imaging techniques summarizes the most significant development reported in the last year on different echocardiographic techniques and their application in a range of settings, from the treatment of heart failure to their use in intraoperative monitoring and guiding interventional procedures. Large sections are devoted to recent developments in three-dimensional imaging and, because of its clinical importance, to magnetic resonance imaging. Finally, there is a comprehensive update on the use of multidetector computed tomography in cardiology.

  9. Information extraction and transmission techniques for spaceborne synthetic aperture radar images

    NASA Technical Reports Server (NTRS)

    Frost, V. S.; Yurovsky, L.; Watson, E.; Townsend, K.; Gardner, S.; Boberg, D.; Watson, J.; Minden, G. J.; Shanmugan, K. S.

    1984-01-01

    Information extraction and transmission techniques for synthetic aperture radar (SAR) imagery were investigated. Four interrelated problems were addressed. An optimal tonal SAR image classification algorithm was developed and evaluated. A data compression technique was developed for SAR imagery which is simple and provides a 5:1 compression with acceptable image quality. An optimal textural edge detector was developed. Several SAR image enhancement algorithms have been proposed. The effectiveness of each algorithm was compared quantitatively.

  10. [The applying and foreground of quantifying DNA content by image analysis technique in determining postmortem interval].

    PubMed

    Wang, Cheng-yi; Liu, Liang

    2002-02-01

    Image Analysis Technique(IAT) was developed at 1950's, which quantifies the changing all the part of image by sampling, processing, quantifying, computing, analyzing the information of image. And now it has become a normal quantifying technique in biology and medicine research. In the present paper, we reviewed briefly the principium of quantifying the DNA content by IAT, the law of degradation of DNA in nucleus and the foreground of this method in determining PMI in forensic pathology.

  11. High-resolution Imaging Techniques for the Assessment of Osteoporosis

    PubMed Central

    Krug, Roland; Burghardt, Andrew J.; Majumdar, Sharmila; Link, Thomas M.

    2010-01-01

    Synopsis The importance of assessing the bone’s microarchitectural make-up in addition to its mineral density in the context of osteoporosis has been emphasized in a number of publications. The high spatial resolution required to resolve the bone’s microstructure in a clinically feasible scan time is challenging. Currently, the best suited modalities meeting these requirements in vivo are high-resolution peripheral quantitative imaging (HR-pQCT) and magnetic resonance imaging (MRI). Whereas HR-pQCT is limited to peripheral skeleton regions like the wrist and ankle, MRI can also image other sites like the proximal femur but usually with lower spatial resolution. In addition Multidetector-CT has been used for high-resolution imaging of trabecular bone structure, however, the radiation dose is a limiting factor. This article provides an overview of the different modalities, technical requirements and recent developments in this emerging field. Details regarding imaging protocols as well as image post-processing methods for bone structure quantification are discussed. PMID:20609895

  12. Bedside, Benchtop, and Bioengineering: Physicochemical Imaging Techniques in Biomineralization.

    PubMed

    Eisenstein, Neil M; Cox, Sophie C; Williams, Richard L; Stapley, Sarah A; Grover, Liam M

    2016-03-01

    The need to quantify physicochemical properties of mineralization spans many fields. Clinicians, mineralization researchers, and bone tissue bioengineers need to be able to measure the distribution, quantity, and the mechanical and chemical properties of mineralization within a wide variety of substrates from injured muscle to electrospun polymer scaffolds and everything in between. The techniques available to measure these properties are highly diverse in terms of their complexity and utility. Therefore it is of the utmost importance that those who intend to use them have a clear understanding of the advantages and disadvantages of each technique and its appropriateness to their specific application. This review provides all of this information for each technique and uses heterotopic ossification and engineered bone substitutes as examples to illustrate how these techniques have been applied. In addition, we provide novel data using advanced techniques to analyze human samples of combat related heterotopic ossification. PMID:26789418

  13. Insight into mechanics of AFM tip-based nanomachining: bending of cantilevers and machined grooves

    NASA Astrophysics Data System (ADS)

    Al-Musawi, R. S. J.; Brousseau, E. B.; Geng, Y.; Borodich, F. M.

    2016-09-01

    Atomic force microscope (AFM) tip-based nanomachining is currently the object of intense research investigations. Values of the load applied to the tip at the free end of the AFM cantilever probe used for nanomachining are always large enough to induce plastic deformation on the specimen surface contrary to the small load values used for the conventional contact mode AFM imaging. This study describes an important phenomenon specific for AFM nanomachining in the forward direction: under certain processing conditions, the deformed shape of the cantilever probe may change from a convex to a concave orientation. The phenomenon can principally change the depth and width of grooves machined, e.g. the grooves machined on a single crystal copper specimen may increase by 50% on average following such a change in the deformed shape of the cantilever. It is argued that this phenomenon can take place even when the AFM-based tool is operated in the so-called force-controlled mode. The study involves the refined theoretical analysis of cantilever probe bending, the analysis of experimental signals monitored during the backward and forward AFM tip-based machining and the inspection of the topography of produced grooves.

  14. Insight into mechanics of AFM tip-based nanomachining: bending of cantilevers and machined grooves.

    PubMed

    Al-Musawi, R S J; Brousseau, E B; Geng, Y; Borodich, F M

    2016-09-23

    Atomic force microscope (AFM) tip-based nanomachining is currently the object of intense research investigations. Values of the load applied to the tip at the free end of the AFM cantilever probe used for nanomachining are always large enough to induce plastic deformation on the specimen surface contrary to the small load values used for the conventional contact mode AFM imaging. This study describes an important phenomenon specific for AFM nanomachining in the forward direction: under certain processing conditions, the deformed shape of the cantilever probe may change from a convex to a concave orientation. The phenomenon can principally change the depth and width of grooves machined, e.g. the grooves machined on a single crystal copper specimen may increase by 50% on average following such a change in the deformed shape of the cantilever. It is argued that this phenomenon can take place even when the AFM-based tool is operated in the so-called force-controlled mode. The study involves the refined theoretical analysis of cantilever probe bending, the analysis of experimental signals monitored during the backward and forward AFM tip-based machining and the inspection of the topography of produced grooves. PMID:27532247

  15. Imaging, cutting, and collecting instrument and method

    DOEpatents

    Tench, Robert J.; Siekhaus, Wigbert J.; Balooch, Mehdi; Balhorn, Rodney L.; Allen, Michael J.

    1995-01-01

    Instrumentation and techniques to image small objects, such as but not limited to individual human chromosomes, with nanometer resolution, to cut-off identified parts of such objects, to move around and manipulate such cut-off parts on the substrate on which they are being imaged to predetermined locations on the substrate, and to remove the cut-off parts from the substrate. This is accomplished using an atomic force microscope (AFM) and by modification of the conventional cantilever stylus assembly of an AFM, such that plural cantilevers are used with either sharp-tips or knife-edges thereon. In addition, the invention can be utilized for measuring hardness of materials.

  16. Improving the ability of image sensors to detect faint stars and moving objects using image deconvolution techniques.

    PubMed

    Fors, Octavi; Núñez, Jorge; Otazu, Xavier; Prades, Albert; Cardinal, Robert D

    2010-01-01

    In this paper we show how the techniques of image deconvolution can increase the ability of image sensors as, for example, CCD imagers, to detect faint stars or faint orbital objects (small satellites and space debris). In the case of faint stars, we show that this benefit is equivalent to double the quantum efficiency of the used image sensor or to increase the effective telescope aperture by more than 30% without decreasing the astrometric precision or introducing artificial bias. In the case of orbital objects, the deconvolution technique can double the signal-to-noise ratio of the image, which helps to discover and control dangerous objects as space debris or lost satellites. The benefits obtained using CCD detectors can be extrapolated to any kind of image sensors. PMID:22294896

  17. Improving the ability of image sensors to detect faint stars and moving objects using image deconvolution techniques.

    PubMed

    Fors, Octavi; Núñez, Jorge; Otazu, Xavier; Prades, Albert; Cardinal, Robert D

    2010-01-01

    In this paper we show how the techniques of image deconvolution can increase the ability of image sensors as, for example, CCD imagers, to detect faint stars or faint orbital objects (small satellites and space debris). In the case of faint stars, we show that this benefit is equivalent to double the quantum efficiency of the used image sensor or to increase the effective telescope aperture by more than 30% without decreasing the astrometric precision or introducing artificial bias. In the case of orbital objects, the deconvolution technique can double the signal-to-noise ratio of the image, which helps to discover and control dangerous objects as space debris or lost satellites. The benefits obtained using CCD detectors can be extrapolated to any kind of image sensors.

  18. A comparative study on preprocessing techniques in diabetic retinopathy retinal images: illumination correction and contrast enhancement.

    PubMed

    Rasta, Seyed Hossein; Partovi, Mahsa Eisazadeh; Seyedarabi, Hadi; Javadzadeh, Alireza

    2015-01-01

    To investigate the effect of preprocessing techniques including contrast enhancement and illumination correction on retinal image quality, a comparative study was carried out. We studied and implemented a few illumination correction and contrast enhancement techniques on color retinal images to find out the best technique for optimum image enhancement. To compare and choose the best illumination correction technique we analyzed the corrected red and green components of color retinal images statistically and visually. The two contrast enhancement techniques were analyzed using a vessel segmentation algorithm by calculating the sensitivity and specificity. The statistical evaluation of the illumination correction techniques were carried out by calculating the coefficients of variation. The dividing method using the median filter to estimate background illumination showed the lowest Coefficients of variations in the red component. The quotient and homomorphic filtering methods after the dividing method presented good results based on their low Coefficients of variations. The contrast limited adaptive histogram equalization increased the sensitivity of the vessel segmentation algorithm up to 5% in the same amount of accuracy. The contrast limited adaptive histogram equalization technique has a higher sensitivity than the polynomial transformation operator as a contrast enhancement technique for vessel segmentation. Three techniques including the dividing method using the median filter to estimate background, quotient based and homomorphic filtering were found as the effective illumination correction techniques based on a statistical evaluation. Applying the local contrast enhancement technique, such as CLAHE, for fundus images presented good potentials in enhancing the vasculature segmentation.

  19. Techniques to derive geometries for image-based Eulerian computations

    PubMed Central

    Dillard, Seth; Buchholz, James; Vigmostad, Sarah; Kim, Hyunggun; Udaykumar, H.S.

    2014-01-01

    Purpose The performance of three frequently used level set-based segmentation methods is examined for the purpose of defining features and boundary conditions for image-based Eulerian fluid and solid mechanics models. The focus of the evaluation is to identify an approach that produces the best geometric representation from a computational fluid/solid modeling point of view. In particular, extraction of geometries from a wide variety of imaging modalities and noise intensities, to supply to an immersed boundary approach, is targeted. Design/methodology/approach Two- and three-dimensional images, acquired from optical, X-ray CT, and ultrasound imaging modalities, are segmented with active contours, k-means, and adaptive clustering methods. Segmentation contours are converted to level sets and smoothed as necessary for use in fluid/solid simulations. Results produced by the three approaches are compared visually and with contrast ratio, signal-to-noise ratio, and contrast-to-noise ratio measures. Findings While the active contours method possesses built-in smoothing and regularization and produces continuous contours, the clustering methods (k-means and adaptive clustering) produce discrete (pixelated) contours that require smoothing using speckle-reducing anisotropic diffusion (SRAD). Thus, for images with high contrast and low to moderate noise, active contours are generally preferable. However, adaptive clustering is found to be far superior to the other two methods for images possessing high levels of noise and global intensity variations, due to its more sophisticated use of local pixel/voxel intensity statistics. Originality/value It is often difficult to know a priori which segmentation will perform best for a given image type, particularly when geometric modeling is the ultimate goal. This work offers insight to the algorithm selection process, as well as outlining a practical framework for generating useful geometric surfaces in an Eulerian setting. PMID

  20. Magnetic resonance imaging acquisition techniques intended to decrease movement artefact in paediatric brain imaging: a systematic review.

    PubMed

    Woodfield, Julie; Kealey, Susan

    2015-08-01

    Attaining paediatric brain images of diagnostic quality can be difficult because of young age or neurological impairment. The use of anaesthesia to reduce movement in MRI increases clinical risk and cost, while CT, though faster, exposes children to potentially harmful ionising radiation. MRI acquisition techniques that aim to decrease movement artefact may allow diagnostic paediatric brain imaging without sedation or anaesthesia. We conducted a systematic review to establish the evidence base for ultra-fast sequences and sequences using oversampling of k-space in paediatric brain MR imaging. Techniques were assessed for imaging time, occurrence of movement artefact, the need for sedation, and either image quality or diagnostic accuracy. We identified 24 relevant studies. We found that ultra-fast techniques had shorter imaging acquisition times compared to standard MRI. Techniques using oversampling of k-space required equal or longer imaging times than standard MRI. Both ultra-fast sequences and those using oversampling of k-space reduced movement artefact compared with standard MRI in unsedated children. Assessment of overall diagnostic accuracy was difficult because of the heterogeneous patient populations, imaging indications, and reporting methods of the studies. In children with shunt-treated hydrocephalus there is evidence that ultra-fast MRI is sufficient for the assessment of ventricular size.

  1. Integration of infrared and optical imaging techniques for the nondestructive inspection of aeronautic parts

    NASA Astrophysics Data System (ADS)

    López, F.; Sfarra, S.; Ibarra-Castanedo, C.; Paoletti, D.; Maldague, X.

    2015-05-01

    This work focuses in the implementation of infrared and optical imaging techniques for the inspection of aeronautics parts. To this aim, a helicopter blade with known defects is inspected with four different techniques: long pulse thermography, pulsed thermography, digital speckle photography (DSP) and holographic interferometry (HI). The first two techniques belongs to the group of infrared imaging techniques, which are based on the analysis of the infrared thermal patterns in order to detect internal anomalies in the material; whilst the last two (DSP and HI) corresponds to the optical imaging techniques which make use of visible light to measure the material response to an applied stress. Both techniques were applied using the active approach, i.e. an external stimulation is applied in order to produce a gradient in either, the thermal and/or displacement field of the material. The results are then compared in order to evaluate the advantages and limitations of each technique.

  2. Statistical Analysis of speckle noise reduction techniques for echocardiographic Images

    NASA Astrophysics Data System (ADS)

    Saini, Kalpana; Dewal, M. L.; Rohit, Manojkumar

    2011-12-01

    Echocardiography is the safe, easy and fast technology for diagnosing the cardiac diseases. As in other ultrasound images these images also contain speckle noise. In some cases this speckle noise is useful such as in motion detection. But in general noise removal is required for better analysis of the image and proper diagnosis. Different Adaptive and anisotropic filters are included for statistical analysis. Statistical parameters such as Signal-to-Noise Ratio (SNR), Peak Signal-to-Noise Ratio (PSNR), and Root Mean Square Error (RMSE) calculated for performance measurement. One more important aspect that there may be blurring during speckle noise removal. So it is prefered that filter should be able to enhance edges during noise removal.

  3. Pathological leucocyte segmentation algorithm based on hyperspectral imaging technique

    NASA Astrophysics Data System (ADS)

    Guan, Yana; Li, Qingli; Wang, Yiting; Liu, Hongying; Zhu, Ziqiang

    2012-05-01

    White blood cells (WBC) are comparatively significant components in the human blood system, and they have a pathological relationship with some blood-related diseases. To analyze the disease information accurately, the most essential work is to segment WBCs. We propose a new method for pathological WBC segmentation based on a hyperspectral imaging system. This imaging system is used to capture WBC images, which is characterized by acquiring 1-D spectral information and 2-D spatial information for each pixel. A spectral information divergence algorithm is presented to segment pathological WBCs into four parts. In order to evaluate the performance of the new approach, K-means and spectral angle mapper-based segmental methods are tested in contrast on six groups of blood smears. Experimental results show that the presented method can segment pathological WBCs more accurately, regardless of their irregular shapes, sizes, and gray-values.

  4. Magnetic Resonance Imaging: Principles and Techniques: Lessons for Clinicians

    PubMed Central

    Grover, Vijay P.B.; Tognarelli, Joshua M.; Crossey, Mary M.E.; Cox, I. Jane; Taylor-Robinson, Simon D.; McPhail, Mark J.W.

    2015-01-01

    The development of magnetic resonance imaging (MRI) for use in medical investigation has provided a huge forward leap in the field of diagnosis, particularly with avoidance of exposure to potentially dangerous ionizing radiation. With decreasing costs and better availability, the use of MRI is becoming ever more pervasive throughout clinical practice. Understanding the principles underlying this imaging modality and its multiple applications can be used to appreciate the benefits and limitations of its use, further informing clinical decision-making. In this article, the principles of MRI are reviewed, with further discussion of specific clinical applications such as parallel, diffusion-weighted, and magnetization transfer imaging. MR spectroscopy is also considered, with an overview of key metabolites and how they may be interpreted. Finally, a brief view on how the use of MRI will change over the coming years is presented. PMID:26628842

  5. Image data-handling techniques for precise velocity measurements of atmospheric inhomogeneities.

    PubMed

    Mitev, V A; Sokolinov, G I

    1995-04-10

    Two techniques for measuring the velocity of inhomogeneities drifting in the atmosphere by the capturing and processing of their images are suggested. Properly selected data records of imaged clouds are used for building time variations of in-plane moving dots, related to different parts of the area of measurement and also corresponding to the image-detector pixel resolution. The precision in obtaining the velocity is provided by adjustment of the time between two successive image registrations.

  6. Photoactivatable fluorophores and techniques for biological imaging applications

    PubMed Central

    Zheng, Genhua

    2013-01-01

    Photoactivatable fluorophores (PAFs) are powerful imaging probes for tracking molecular and cellular dynamics with high spatiotemporal resolution in biological systems. Recent developments in biological microscopy have raised new demands for engineering new PAFs with improved properties such as high two photon excitation efficiency, reversibility, cellular delivery and targeting. Here we review the history and some of the recent developments in this area, emphasizing our efforts in developing a new class of caged coumarins and related imaging methods for studying dynamic cell-cell communication through gap junction channels, and in extending the application of these caged coumarins to new areas including spatiotemporal control of microRNA activity in vivo. PMID:22252510

  7. Physical And Medical Attributes Of Six Contemporary Noninvasive Imaging Techniques

    NASA Astrophysics Data System (ADS)

    Budinger, Thomas F.

    1981-11-01

    Digital subtraction angiography(DSA)is compared to five other noninvasive imaging methods with respect to physical attributes and medical applications. 1) Digital subtraction angiography measures flow channel (vessel) anatomy and vascular leaks in regions where signals from under and overlying vascular pools do not conflict in strength with the vessel or tissue of interest. 2) X-ray computed tomography, in principle, can separate the under and overlying signals, yet presently it is limited in speed, axial coverage, and computational burden for tasks DSA can efficiently perform. Possible exceptions are the dynamic spatial reconstructor (DSR) of Mayo Clinic and the system under construction at the University of California, San Francisco. 3) Heavy ion imaging measures electron density and is less sensitive to injected contrast than x-ray imaging which has the advantage of the photoelectric effect. A unique attribute of heavy ion imaging is its potential for treatment planning and the fact that beam hardening is not a physical problem. 4) Ultrasound detects surfaces, bulk tissue characteristics, and blood velocity. Doppler ultrasound competes with DSA in some regions of the body and generally involves less equipment and patient procedures. Ultrasound vessel imaging and range-gated Doppler have limitations due to sound absorption by atheromatous tissue and available imaging windows. 5) Emission tomography measures receptor site distribution, metabolism, permeability, and tissue perfusion. Resolution is limited to 7mm full width half maximum (FWHM) in the near future, and extraction of metabolic and perfusion information usually requires kinetic analyses with statistically poor data. The ability of positron tomography to measure metabolism (sugar, fatty acid, and oxygen utilization) and the ability to measure tissue perfusion with single photon tomography (17 mm FWHM) or PET (7 mm FWHM) using non-cyclotron produced radionuclides are the major unique features of emission

  8. Terahertz imaging diagnostics of cancer tissues with a chemometrics technique

    NASA Astrophysics Data System (ADS)

    Nakajima, Sachiko; Hoshina, Hiromichi; Yamashita, Masatsugu; Otani, Chiko; Miyoshi, Norio

    2007-01-01

    Terahertz spectroscopic images of paraffin-embedded cancer tissues have been measured by a terahertz time domain spectrometer. For the systematic identification of cancer tumors, the principal component analysis and the clustering analysis were applied. In three of the four samples, the cancer tissue was recognized as an aggregate of the data points in the principal component plots. By the agglomerative hierarchical clustering, the data points were well categorized into cancer and the other tissues. This method can be also applied to various kinds of automatic discrimination of plural components by terahertz spectroscopic imaging.

  9. A Comparison of the Multiscale Retinex With Other Image Enhancement Techniques

    NASA Technical Reports Server (NTRS)

    Rahman, Zia-Ur; Woodell, Glenn A.; Jobson, Daniel J.

    1997-01-01

    The multiscale retinex with color restoration (MSRCR) has shown itself to be a very versatile automatic image enhancement algorithm that simultaneously provides dynamic range compression, color constancy, and color rendition. A number of algorithms exist that provide one or more of these features, but not all. In this paper we compare the performance of the MSRCR with techniques that are widely used for image enhancement. Specifically, we compare the MSRCR with color adjustment methods such as gamma correction and gain/offset application, histogram modification techniques such as histogram equalization and manual histogram adjustment, and other more powerful techniques such as homomorphic filtering and 'burning and dodging'. The comparison is carried out by testing the suite of image enhancement methods on a set of diverse images. We find that though some of these techniques work well for some of these images, only the MSRCR performs universally well on the test set.

  10. Three-dimensional electro-floating display system based on integral imaging technique

    NASA Astrophysics Data System (ADS)

    Min, Sung-Wook; Kim, Joohwan; Lee, Byoungho

    2005-03-01

    New three-dimensional (3D) display system which combines two different display techniques is proposed. One of the techniques is integral imaging. The integral imaging display system consists of a lens array and a 2D display device, and the 3D reconstructed images are integrated from the elemental images by the lens array. The other technique is image floating, which uses a big convex lens or a concave mirror to exhibit the image of a real object to the observer. The electro-floating display system which does not use the real object needs the volumetric 3D display part because the floating display system cannot make the 3D image, but only carries the image closer to the observer. The integral imaging display system can be adopted in the electro-floating display system, because the integrated image has the characteristics of the volumetric image within the viewing angle. Moreover, many methods to enhance the viewing angle of the integral imaging display system can be used for the proposed system directly. The proposed system can be successfully applied to many 3D applications such as 3D TV.

  11. Advanced Computer Image Generation Techniques Exploiting Perceptual Characteristics. Final Report.

    ERIC Educational Resources Information Center

    Stenger, Anthony J.; And Others

    This study suggests and identifies computer image generation (CIG) algorithms for visual simulation that improve the training effectiveness of CIG simulators and identifies areas of basic research in visual perception that are significant for improving CIG technology. The first phase of the project entailed observing three existing CIG simulators.…

  12. Statistical techniques to find similar objects in images

    SciTech Connect

    Fodor, I K

    2003-10-16

    One problem in similarity-based object retrieval (SBOR) is how to define and estimate the similarity between two objects. In this paper we present a shape similarity measure based on thin-plate splines, and compare its performance with several other measures used in SBOR. We evaluate the methods on both artificial and real images.

  13. Comparison of de-noising techniques for FIRST images

    SciTech Connect

    Fodor, I K; Kamath, C

    2001-01-22

    Data obtained through scientific observations are often contaminated by noise and artifacts from various sources. As a result, a first step in mining these data is to isolate the signal of interest by minimizing the effects of the contaminations. Once the data has been cleaned or de-noised, data mining can proceed as usual. In this paper, we describe our work in denoising astronomical images from the Faint Images of the Radio Sky at Twenty-Centimeters (FIRST) survey. We are mining this survey to detect radio-emitting galaxies with a bent-double morphology. This task is made difficult by the noise in the images caused by the processing of the sensor data. We compare three different approaches to de-noising: thresholding of wavelet coefficients advocated in the statistical community, traditional Altering methods used in the image processing community, and a simple thresholding scheme proposed by FIRST astronomers. While each approach has its merits and pitfalls, we found that for our purpose, the simple thresholding scheme worked relatively well for the FIRST dataset.

  14. Characterization of controlled bone defects using 2D and 3D ultrasound imaging techniques.

    PubMed

    Parmar, Biren J; Longsine, Whitney; Sabonghy, Eric P; Han, Arum; Tasciotti, Ennio; Weiner, Bradley K; Ferrari, Mauro; Righetti, Raffaella

    2010-08-21

    Ultrasound is emerging as an attractive alternative modality to standard x-ray and CT methods for bone assessment applications. As of today, however, there is a lack of systematic studies that investigate the performance of diagnostic ultrasound techniques in bone imaging applications. This study aims at understanding the performance limitations of new ultrasound techniques for imaging bones in controlled experiments in vitro. Experiments are performed on samples of mammalian and non-mammalian bones with controlled defects with size ranging from 400 microm to 5 mm. Ultrasound findings are statistically compared with those obtained from the same samples using standard x-ray imaging modalities and optical microscopy. The results of this study demonstrate that it is feasible to use diagnostic ultrasound imaging techniques to assess sub-millimeter bone defects in real time and with high accuracy and precision. These results also demonstrate that ultrasound imaging techniques perform comparably better than x-ray imaging and optical imaging methods, in the assessment of a wide range of controlled defects both in mammalian and non-mammalian bones. In the future, ultrasound imaging techniques might provide a cost-effective, real-time, safe and portable diagnostic tool for bone imaging applications.

  15. Pediatric whole-body MRI: A review of current imaging techniques and clinical applications.

    PubMed

    Davis, Joseph T; Kwatra, Neha; Schooler, Gary R

    2016-10-01

    There are many congenital, neoplastic, inflammatory, and infectious processes in the pediatric patient for which whole-body imaging may be of benefit diagnostically and prognostically. With recent improvements in magnetic resonance imaging (MRI) hardware and software and resultant dramatically reduced scan times, imaging of the whole body with MRI has become a much more practicable technique in children. Whole-body MRI can provide a high level of soft tissue and skeletal detail while avoiding the exposure to ionizing radiation inherent to computed tomography and nuclear medicine imaging techniques. This article reviews the more common current whole-body MRI techniques in children and the primary pathologies for which this imaging modality may be most useful to the radiologists and referring clinicians. J. MAGN. RESON. IMAGING 2016;44:783-793.

  16. Optical implementation of improved resolution with intermediate-view reconstruction technique based on integral imaging

    NASA Astrophysics Data System (ADS)

    Lee, Keong-Jin; Lee, Sang-Tae; Oh, Yong-Seok; Hong, Suk-Pyo; Kim, Chang-Keun; Kim, Eun-Soo

    2008-02-01

    To overcome the viewing resolution limit defined by the Nyquist sampling theorem for a given lenslet pitch, a Moving Array-Lens Technique (MALT) was developed in 3-D integral imaging technique. Even though the MALT is an effective method for resolution improvement of Integral Imaging, this cannot be applied to a real-time 3-D integral imaging display system because of its mechanical movement. In this paper, we propose an integral imaging display using a computational pick-up method based on Intermediate-View Reconstruction Technique instead of optical moving pickup. We show that the proposed system can provide optically resolution-improved 3-D images of integral imaging by use of EIs generated by the IVRT through the optical experiments.

  17. PREFACE: NC-AFM 2006: Proceedings of the 9th International Conference on Non-contact Atomic Force Microscopy

    NASA Astrophysics Data System (ADS)

    Tomitori, Masahiko; Onishi, Hiroshi

    2007-02-01

    The advent of scanning probe microscopy (SPM) in the 1980s has significantly promoted nanoscience and nanotechnology. In particular, non-contact atomic force microscopy (NC-AFM), one of the SPM family, has unique capabilities with high spatial resolution for nanoscale measurements in vacuum, air and liquids. In the last decade we have witnessed the rapid progress of NC-AFM with improved performance and increasing applications. A series of NC-AFM international conferences have greatly contributed to this field. Initiated in Osaka in 1998, the NC-AFM meeting has been followed by annual conferences at Pontresina, Hamburg, Kyoto, Montreal, Dingle, Seattle and Bad Essen. The 9th conference was held in Kobe, Japan, 16-20 July 2006. This special issue of Nanotechnology contains the outstanding contributions of the conference. During the meeting delegates learnt about a number of significant advances. Topics covered atomic resolution imaging of metals, semiconductors, insulators, ionic crystals, oxides, molecular systems, imaging of biological materials in various environments and novel instrumentation. Work also included the characterization of electronic and magnetic properties, tip and cantilever fabrication and characterization, atomic distinction based on analysis of tip-sample interaction, atomic scale manipulation, fabrication of nanostructures using NC-AFM, and related theories and simulations. We are greatly impressed by the increasing number of applications, and convinced that NC-AFM and related techniques are building a bridge to a future nano world, where quantum phenomena will dominate and nano devices will be realized. In addition, a special session on SPM road maps was held as a first trial in the field, where the future prospects of SPM were discussed enthusiastically. The overall success of the NC-AFM 2006 conference was due to the efforts of many individuals and groups with respect to scientific and technological progress, as well as the international

  18. Phase diversity and polarization augmented techniques for active imaging

    NASA Astrophysics Data System (ADS)

    Johnson, Peter M.

    A firm understanding of the space environment is necessary to defend US access to space-based systems. Conventional imaging systems have been developed to gather information on space-based objects, but they are incapable of imaging objects in the earth's shadow. In order close this gap in imaging-system coverage, an active-illumination based approach must be used. To facilitate this, a multi-frame active phase diversity imaging (APDI) algorithm is derived and demonstrated for the statistics of coherent light. In addition to conventional focal-plane and diversity-plane data, a statistical description for the pupil plane intensity distribution is formed and included in the derivation. The algorithm is implemented and characterized using a Monte Carlo approach. Analysis shows that the algorithm is robust, that the effect of system configuration on optimal algorithm parameters is minimal, that the algorithm is insensitive to detection noise for SNR ≥ 7, and that it performs well for SNRs as low as 2. Furthermore, it's shown that introduction of pupil-plane data on average results in a 60% better image reconstruction from dynamically aberrated data than is obtained using only focal-plane and diversity-plane data. Both an Expectation-Maximization algorithm and a lensless-APDI approach are presented for generating imagery directly from pupil-plane polarization measurements. Shortfalls of these methods and areas worthy of further consideration are identified. The use of pupil-plane polarization state measurements in place of pupil-plane intensity measurements in the APDI algorithm is explored. A framework for including polarization measurements into the APDI algorithm is demonstrated, and an initial statistical model and results are presented. Under the developed implementation, introduction of the polarization data doesn't result in better performance. Areas that may result in better reconstructions are discussed.

  19. A new iterative triclass thresholding technique in image segmentation.

    PubMed

    Cai, Hongmin; Yang, Zhong; Cao, Xinhua; Xia, Weiming; Xu, Xiaoyin

    2014-03-01

    We present a new method in image segmentation that is based on Otsu's method but iteratively searches for subregions of the image for segmentation, instead of treating the full image as a whole region for processing. The iterative method starts with Otsu's threshold and computes the mean values of the two classes as separated by the threshold. Based on the Otsu's threshold and the two mean values, the method separates the image into three classes instead of two as the standard Otsu's method does. The first two classes are determined as the foreground and background and they will not be processed further. The third class is denoted as a to-be-determined (TBD) region that is processed at next iteration. At the succeeding iteration, Otsu's method is applied on the TBD region to calculate a new threshold and two class means and the TBD region is again separated into three classes, namely, foreground, background, and a new TBD region, which by definition is smaller than the previous TBD regions. Then, the new TBD region is processed in the similar manner. The process stops when the Otsu's thresholds calculated between two iterations is less than a preset threshold. Then, all the intermediate foreground and background regions are, respectively, combined to create the final segmentation result. Tests on synthetic and real images showed that the new iterative method can achieve better performance than the standard Otsu's method in many challenging cases, such as identifying weak objects and revealing fine structures of complex objects while the added computational cost is minimal.

  20. Advanced imaging techniques for assessment of structure, composition and function in biofilm systems.

    PubMed

    Neu, Thomas R; Manz, Bertram; Volke, Frank; Dynes, James J; Hitchcock, Adam P; Lawrence, John R

    2010-04-01

    Scientific imaging represents an important and accepted research tool for the analysis and understanding of complex natural systems. Apart from traditional microscopic techniques such as light and electron microscopy, new advanced techniques have been established including laser scanning microscopy (LSM), magnetic resonance imaging (MRI) and scanning transmission X-ray microscopy (STXM). These new techniques allow in situ analysis of the structure, composition, processes and dynamics of microbial communities. The three techniques open up quantitative analytical imaging possibilities that were, until a few years ago, impossible. The microscopic techniques represent powerful tools for examination of mixed environmental microbial communities usually encountered in the form of aggregates and films. As a consequence, LSM, MRI and STXM are being used in order to study complex microbial biofilm systems. This mini review provides a short outline of the more recent applications with the intention to stimulate new research and imaging approaches in microbiology.