Sample records for agriculturally important species

  1. Biodiversity of Aspergillus species in some important agricultural products.

    PubMed

    Perrone, G; Susca, A; Cozzi, G; Ehrlich, K; Varga, J; Frisvad, J C; Meijer, M; Noonim, P; Mahakarnchanakul, W; Samson, R A

    2007-01-01

    The genus Aspergillus is one of the most important filamentous fungal genera. Aspergillus species are used in the fermentation industry, but they are also responsible of various plant and food secondary rot, with the consequence of possible accumulation of mycotoxins. The aflatoxin producing A. flavus and A. parasiticus, and ochratoxinogenic A. niger, A. ochraceus and A. carbonarius species are frequently encountered in agricultural products. Studies on the biodiversity of toxigenic Aspergillus species is useful to clarify molecular, ecological and biochemical characteristics of the different species in relation to their different adaptation to environmental and geographical conditions, and to their potential toxigenicity. Here we analyzed the biodiversity of ochratoxin producing species occurring on two important crops: grapes and coffee, and the genetic diversity of A. flavus populations occurring in agricultural fields. Altogether nine different black Aspergillus species can be found on grapes which are often difficult to identify with classical methods. The polyphasic approach used in our studies led to the identification of three new species occurring on grapes: A. brasiliensis, A. ibericus, and A. uvarum. Similar studies on the Aspergillus species occurring on coffee beans have evidenced in the last five years that A. carbonarius is an important source of ochratoxin A in coffee. Four new species within the black aspergilli were also identified in coffee beans: A. sclerotioniger, A. lacticoffeatus, A. sclerotiicarbonarius, and A. aculeatinus. The genetic diversity within A. flavus populations has been widely studied in relation to their potential aflatoxigenicity and morphological variants L- and S-strains. Within A. flavus and other Aspergillus species capable of aflatoxin production, considerable diversity is found. We summarise the main recent achievements in the diversity of the aflatoxin gene cluster in A. flavus populations, A. parasiticus and the non

  2. Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes

    NASA Astrophysics Data System (ADS)

    Wemheuer, Franziska; Kaiser, Kristin; Karlovsky, Petr; Daniel, Rolf; Vidal, Stefan; Wemheuer, Bernd

    2017-01-01

    Endophytic bacteria are critical for plant growth and health. However, compositional and functional responses of bacterial endophyte communities towards agricultural practices are still poorly understood. Hence, we analyzed the influence of fertilizer application and mowing frequency on bacterial endophytes in three agriculturally important grass species. For this purpose, we examined bacterial endophytic communities in aerial plant parts of Dactylis glomerata L., Festuca rubra L., and Lolium perenne L. by pyrotag sequencing of bacterial 16S rRNA genes over two consecutive years. Although management regimes influenced endophyte communities, observed responses were grass species-specific. This might be attributed to several bacteria specifically associated with a single grass species. We further predicted functional profiles from obtained 16S rRNA data. These profiles revealed that predicted abundances of genes involved in plant growth promotion or nitrogen metabolism differed between grass species and between management regimes. Moreover, structural and functional community patterns showed no correlation to each other indicating that plant species-specific selection of endophytes is driven by functional rather than phylogenetic traits. The unique combination of 16S rRNA data and functional profiles provided a holistic picture of compositional and functional responses of bacterial endophytes in agricultural relevant grass species towards management practices.

  3. The importance of agricultural lands for Himalayan birds in winter.

    PubMed

    Elsen, Paul R; Kalyanaraman, Ramnarayan; Ramesh, Krishnamurthy; Wilcove, David S

    2017-04-01

    The impacts of land-use change on biodiversity in the Himalayas are poorly known, notwithstanding widespread deforestation and agricultural intensification in this highly biodiverse region. Although intact primary forests harbor many Himalayan birds during breeding, a large number of bird species use agricultural lands during winter. We assessed how Himalayan bird species richness, abundance, and composition during winter are affected by forest loss stemming from agriculture and grazing. Bird surveys along 12 elevational transects within primary forest, low-intensity agriculture, mixed subsistence agriculture, and intensively grazed pastures in winter revealed that bird species richness and abundance were greatest in low-intensity and mixed agriculture, intermediate in grazed pastures, and lowest in primary forest at both local and landscape scales; over twice as many species and individuals were recorded in low-intensity agriculture than in primary forest. Bird communities in primary forests were distinct from those in all other land-use classes, but only 4 species were unique to primary forests. Low-, medium-, and high-intensity agriculture harbored 32 unique species. Of the species observed in primary forest, 80% had equal or greater abundance in low-intensity agricultural lands, underscoring the value of these lands in retaining diverse community assemblages at high densities in winter. Among disturbed landscapes, bird species richness and abundance declined as land-use intensity increased, especially in high-intensity pastures. Our results suggest that agricultural landscapes are important for most Himalayan bird species in winter. But agricultural intensification-especially increased grazing-will likely result in biodiversity losses. Given that forest reserves alone may inadequately conserve Himalayan birds in winter, comprehensive conservation strategies in the region must go beyond protecting intact primary forests and ensure that low-intensity agricultural

  4. The eco-evolutionary impacts of domestication and agricultural practices on wild species.

    PubMed

    Turcotte, Martin M; Araki, Hitoshi; Karp, Daniel S; Poveda, Katja; Whitehead, Susan R

    2017-01-19

    Agriculture is a dominant evolutionary force that drives the evolution of both domesticated and wild species. However, the various mechanisms of agriculture-induced evolution and their socio-ecological consequences are not often synthetically discussed. Here, we explore how agricultural practices and evolutionary changes in domesticated species cause evolution in wild species. We do so by examining three processes by which agriculture drives evolution. First, differences in the traits of domesticated species, compared with their wild ancestors, alter the selective environment and create opportunities for wild species to specialize. Second, selection caused by agricultural practices, including both those meant to maximize productivity and those meant to control pest species, can lead to pest adaptation. Third, agriculture can cause non-selective changes in patterns of gene flow in wild species. We review evidence for these processes and then discuss their ecological and sociological impacts. We finish by identifying important knowledge gaps and future directions related to the eco-evolutionary impacts of agriculture including their extent, how to prevent the detrimental evolution of wild species, and finally, how to use evolution to minimize the ecological impacts of agriculture.This article is part of the themed issue 'Human influences on evolution, and the ecological and societal consequences'. © 2016 The Author(s).

  5. The eco-evolutionary impacts of domestication and agricultural practices on wild species

    PubMed Central

    Araki, Hitoshi; Karp, Daniel S.; Poveda, Katja

    2017-01-01

    Agriculture is a dominant evolutionary force that drives the evolution of both domesticated and wild species. However, the various mechanisms of agriculture-induced evolution and their socio-ecological consequences are not often synthetically discussed. Here, we explore how agricultural practices and evolutionary changes in domesticated species cause evolution in wild species. We do so by examining three processes by which agriculture drives evolution. First, differences in the traits of domesticated species, compared with their wild ancestors, alter the selective environment and create opportunities for wild species to specialize. Second, selection caused by agricultural practices, including both those meant to maximize productivity and those meant to control pest species, can lead to pest adaptation. Third, agriculture can cause non-selective changes in patterns of gene flow in wild species. We review evidence for these processes and then discuss their ecological and sociological impacts. We finish by identifying important knowledge gaps and future directions related to the eco-evolutionary impacts of agriculture including their extent, how to prevent the detrimental evolution of wild species, and finally, how to use evolution to minimize the ecological impacts of agriculture. This article is part of the themed issue ‘Human influences on evolution, and the ecological and societal consequences’. PMID:27920378

  6. Invasive species in agriculture

    USDA-ARS?s Scientific Manuscript database

    Agricultural production of food, feed, fiber or fuel is a local human activity with global ecological impacts, including the potential to foster invasions. Agriculture plays an unusual role in biological invasions, in that it is both a source of non-indigenous invasive species (NIS) and especially s...

  7. Allergens/Antigens, toxins and polyketides of important Aspergillus species.

    PubMed

    Bhetariya, Preetida J; Madan, Taruna; Basir, Seemi Farhat; Varma, Anupam; Usha, Sarma P

    2011-04-01

    The medical, agricultural and biotechnological importance of the primitive eukaryotic microorganisms, the Fungi was recognized way back in 1920. Among various groups of fungi, the Aspergillus species are studied in great detail using advances in genomics and proteomics to unravel biological and molecular mechanisms in these fungi. Aspergillus fumigatus, Aspergillus flavus, Aspergillus niger, Aspergillus parasiticus, Aspergillus nidulans and Aspergillus terreus are some of the important species relevant to human, agricultural and biotechnological applications. The potential of Aspergillus species to produce highly diversified complex biomolecules such as multifunctional proteins (allergens, antigens, enzymes) and polyketides is fascinating and demands greater insight into the understanding of these fungal species for application to human health. Recently a regulator gene for secondary metabolites, LaeA has been identified. Gene mining based on LaeA has facilitated new metabolites with antimicrobial activity such as emericellamides and antitumor activity such as terrequinone A from A. nidulans. Immunoproteomic approach was reported for identification of few novel allergens for A. fumigatus. In this context, the review is focused on recent developments in allergens, antigens, structural and functional diversity of the polyketide synthases that produce polyketides of pharmaceutical and biological importance. Possible antifungal drug targets for development of effective antifungal drugs and new strategies for development of molecular diagnostics are considered.

  8. Invasive species research in the United States Department of Agriculture-Agricultural Research Service.

    PubMed

    Carruthers, Raymond I

    2003-01-01

    Invasive pests cause huge losses both to agricultural production systems and to the natural environment through displacing native species and decreasing biodiversity. It is now estimated that many thousand exotic insect, weed and pathogen species have been established in the USA and that these invasive species are responsible for a large portion of the $130 billion losses estimated to be caused by pests each year. The Agricultural Research Service (ARS) has responded with extensive research and action programs aimed at understanding these problems and developing new management approaches for their control. This paper provides an overview of some of the ARS research that has been conducted on invasive species over the past few years and addresses both different categories of research and some specific pest systems of high interest to the US Department of Agriculture.

  9. Global threat to agriculture from invasive species.

    PubMed

    Paini, Dean R; Sheppard, Andy W; Cook, David C; De Barro, Paul J; Worner, Susan P; Thomas, Matthew B

    2016-07-05

    Invasive species present significant threats to global agriculture, although how the magnitude and distribution of the threats vary between countries and regions remains unclear. Here, we present an analysis of almost 1,300 known invasive insect pests and pathogens, calculating the total potential cost of these species invading each of 124 countries of the world, as well as determining which countries present the greatest threat to the rest of the world given their trading partners and incumbent pool of invasive species. We find that countries vary in terms of potential threat from invasive species and also their role as potential sources, with apparently similar countries sometimes varying markedly depending on specifics of agricultural commodities and trade patterns. Overall, the biggest agricultural producers (China and the United States) could experience the greatest absolute cost from further species invasions. However, developing countries, in particular, Sub-Saharan African countries, appear most vulnerable in relative terms. Furthermore, China and the United States represent the greatest potential sources of invasive species for the rest of the world. The analysis reveals considerable scope for ongoing redistribution of known invasive pests and highlights the need for international cooperation to slow their spread.

  10. Global threat to agriculture from invasive species

    PubMed Central

    Paini, Dean R.; Sheppard, Andy W.; Cook, David C.; De Barro, Paul J.; Worner, Susan P.; Thomas, Matthew B.

    2016-01-01

    Invasive species present significant threats to global agriculture, although how the magnitude and distribution of the threats vary between countries and regions remains unclear. Here, we present an analysis of almost 1,300 known invasive insect pests and pathogens, calculating the total potential cost of these species invading each of 124 countries of the world, as well as determining which countries present the greatest threat to the rest of the world given their trading partners and incumbent pool of invasive species. We find that countries vary in terms of potential threat from invasive species and also their role as potential sources, with apparently similar countries sometimes varying markedly depending on specifics of agricultural commodities and trade patterns. Overall, the biggest agricultural producers (China and the United States) could experience the greatest absolute cost from further species invasions. However, developing countries, in particular, Sub-Saharan African countries, appear most vulnerable in relative terms. Furthermore, China and the United States represent the greatest potential sources of invasive species for the rest of the world. The analysis reveals considerable scope for ongoing redistribution of known invasive pests and highlights the need for international cooperation to slow their spread. PMID:27325781

  11. Recognising Differences in Weed and Crop Species Recognition Skills of Agriculture Students

    ERIC Educational Resources Information Center

    Burrows, Geoffrey E.

    2012-01-01

    Students in an agricultural science degree were surveyed to assess their ability to recognise plants of agricultural importance. The survey consisted of high quality images of 25 species. Students were surveyed at the start of their studies in first year, and at various times during their second year of studies. At the start of their studies…

  12. Using geomorphological variables to predict the spatial distribution of plant species in agricultural drainage networks.

    PubMed

    Rudi, Gabrielle; Bailly, Jean-Stéphane; Vinatier, Fabrice

    2018-01-01

    To optimize ecosystem services provided by agricultural drainage networks (ditches) in headwater catchments, we need to manage the spatial distribution of plant species living in these networks. Geomorphological variables have been shown to be important predictors of plant distribution in other ecosystems because they control the water regime, the sediment deposition rates and the sun exposure in the ditches. Whether such variables may be used to predict plant distribution in agricultural drainage networks is unknown. We collected presence and absence data for 10 herbaceous plant species in a subset of a network of drainage ditches (35 km long) within a Mediterranean agricultural catchment. We simulated their spatial distribution with GLM and Maxent model using geomorphological variables and distance to natural lands and roads. Models were validated using k-fold cross-validation. We then compared the mean Area Under the Curve (AUC) values obtained for each model and other metrics issued from the confusion matrices between observed and predicted variables. Based on the results of all metrics, the models were efficient at predicting the distribution of seven species out of ten, confirming the relevance of geomorphological variables and distance to natural lands and roads to explain the occurrence of plant species in this Mediterranean catchment. In particular, the importance of the landscape geomorphological variables, ie the importance of the geomorphological features encompassing a broad environment around the ditch, has been highlighted. This suggests that agro-ecological measures for managing ecosystem services provided by ditch plants should focus on the control of the hydrological and sedimentological connectivity at the catchment scale. For example, the density of the ditch network could be modified or the spatial distribution of vegetative filter strips used for sediment trapping could be optimized. In addition, the vegetative filter strips could constitute

  13. Effect of scale on trait predictors of species responses to agriculture.

    PubMed

    Gilroy, James J; Medina Uribe, Claudia A; Haugaasen, Torbjørn; Edwards, David P

    2015-04-01

    Species persistence in human-altered landscapes can depend on factors operating at multiple spatial scales. To understand anthropogenic impacts on biodiversity, it is useful to examine relationships between species traits and their responses to land-use change. A key knowledge gap concerns whether these relationships vary depending on the scale of response under consideration. We examined how local- and large-scale habitat variables influence the occupancy dynamics of a bird community in cloud forest zones in the Colombian Chocó-Andes. Using data collected across a continuum of forest and agriculture, we examined which traits best predict species responses to local variation in farmland and which traits best predict species responses to isolation from contiguous forest. Global range size was a strong predictor of species responses to agriculture at both scales; widespread species were less likely to decline as local habitat cover decreased and as distance from forest increased. Habitat specialization was a strong predictor of species responses only at the local scale. Open-habitat species were particularly likely to increase as pasture increased, but they were relatively insensitive to variation in distance to forest. Foraging plasticity and flocking behavior were strong predictors of species responses to distance from forest, but not their responses to local habitat. Species with lower plasticity in foraging behaviors and obligate flock-following species were more likely to decline as distance from contiguous forest increased. For species exhibiting these latter traits, persistence in tropical landscapes may depend on the protection of larger contiguous blocks of forest, rather than the integration of smaller-scale woodland areas within farmland. Species listed as threatened or near threatened on the International Union for Conservation of Nature Red List were also more likely to decline in response to both local habitat quality and isolation from forest relative

  14. Changes in tree species importance following harvesting disturbance in north Mississippi between 1967 and 1994

    Treesearch

    Andrew J. Hartsell; James F. Rosson

    2007-01-01

    We used continuous forest inventory data from the Forest Inventory and Analysis unit of the U.S. Department of Agriculture, Forest Service to study the impacts of timber harvesting on species composition and species importance in a 26-county region in north Mississippi. The region was 59 percent forested and contained 1 965 223 ha of timberland. There were 524 upland...

  15. Agriculturally important microbial biofilms: Present status and future prospects.

    PubMed

    Velmourougane, Kulandaivelu; Prasanna, Radha; Saxena, Anil Kumar

    2017-07-01

    Microbial biofilms are a fascinating subject, due to their significant roles in the environment, industry, and health. Advances in biochemical and molecular techniques have helped in enhancing our understanding of biofilm structure and development. In the past, research on biofilms primarily focussed on health and industrial sectors; however, lately, biofilms in agriculture are gaining attention due to their immense potential in crop production, protection, and improvement. Biofilms play an important role in colonization of surfaces - soil, roots, or shoots of plants and enable proliferation in the desired niche, besides enhancing soil fertility. Although reports are available on microbial biofilms in general; scanty information is published on biofilm formation by agriculturally important microorganisms (bacteria, fungi, bacterial-fungal) and their interactions in the ecosystem. Better understanding of agriculturally important bacterial-fungal communities and their interactions can have several implications on climate change, soil quality, plant nutrition, plant protection, bioremediation, etc. Understanding the factors and genes involved in biofilm formation will help to develop more effective strategies for sustainable and environment-friendly agriculture. The present review brings together fundamental aspects of biofilms, in relation to their formation, regulatory mechanisms, genes involved, and their application in different fields, with special emphasis on agriculturally important microbial biofilms. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. Using geomorphological variables to predict the spatial distribution of plant species in agricultural drainage networks

    PubMed Central

    Bailly, Jean-Stéphane; Vinatier, Fabrice

    2018-01-01

    To optimize ecosystem services provided by agricultural drainage networks (ditches) in headwater catchments, we need to manage the spatial distribution of plant species living in these networks. Geomorphological variables have been shown to be important predictors of plant distribution in other ecosystems because they control the water regime, the sediment deposition rates and the sun exposure in the ditches. Whether such variables may be used to predict plant distribution in agricultural drainage networks is unknown. We collected presence and absence data for 10 herbaceous plant species in a subset of a network of drainage ditches (35 km long) within a Mediterranean agricultural catchment. We simulated their spatial distribution with GLM and Maxent model using geomorphological variables and distance to natural lands and roads. Models were validated using k-fold cross-validation. We then compared the mean Area Under the Curve (AUC) values obtained for each model and other metrics issued from the confusion matrices between observed and predicted variables. Based on the results of all metrics, the models were efficient at predicting the distribution of seven species out of ten, confirming the relevance of geomorphological variables and distance to natural lands and roads to explain the occurrence of plant species in this Mediterranean catchment. In particular, the importance of the landscape geomorphological variables, ie the importance of the geomorphological features encompassing a broad environment around the ditch, has been highlighted. This suggests that agro-ecological measures for managing ecosystem services provided by ditch plants should focus on the control of the hydrological and sedimentological connectivity at the catchment scale. For example, the density of the ditch network could be modified or the spatial distribution of vegetative filter strips used for sediment trapping could be optimized. In addition, the vegetative filter strips could constitute

  17. Homogenizing and diversifying effects of intensive agricultural land-use on plant species beta diversity in Central Europe - A call to adapt our conservation measures

    Treesearch

    Constanze Buhk; Martin Alt; Manuel J. Steinbauer; Carl Beierkuhnlein; Steve Warren; Anke Jentsch

    2017-01-01

    The prevention of biodiversity loss in agricultural landscapes to protect ecosystem stability and functions is of major importance to stabilize overall diversity. Intense agriculture leads to a loss in species richness and homogenization of species pools, but the processes behind are poorly understood due to a lack of systematic case studies: The specific...

  18. A landscape genetic analysis of important agricultural pest species in Tunisia: The whitefly Bemisia tabaci

    PubMed Central

    Fakhfakh, Hatem; Belkadhi, Mohamed Sadok

    2017-01-01

    Combining landscape ecology and genetics provides an excellent framework to appreciate pest population dynamics and dispersal. The genetic architectures of many species are always shaped by environmental constraints. Because little is known about the ecological and genetic traits of Tunisian whitefly populations, the main objective of this work is to highlight patterns of biodiversity, genetic structure and migration routes of this pest. We used nuclear microsatellite loci to analyze B. tabaci populations collected from various agricultural areas across the country and we determine their biotype status. Molecular data were subsequently interpreted in an ecological context supplied from a species distribution model to infer habitat suitability and hereafter the potential connection paths between sampling localities. An analysis of landscape resistance to B. tabaci genetic flow was thus applied to take into account habitat suitability, genetic relatedness and functional connectivity of habitats within a varied landscape matrix. We shed light on the occurrence of three geographically delineated genetic groups with high levels of genetic differentiation within each of them. Potential migration corridors of this pest were then established providing significant advances toward the understanding of genetic features and the dynamic dispersal of this pest. This study supports the hypothesis of a long-distance dispersal of B. tabaci followed by infrequent long-term isolations. The Inference of population sources and colonization routes is critical for the design and implementation of accurate management strategies against this pest. PMID:28972992

  19. A landscape genetic analysis of important agricultural pest species in Tunisia: The whitefly Bemisia tabaci.

    PubMed

    Ben Abdelkrim, Ahmed; Hattab, Tarek; Fakhfakh, Hatem; Belkadhi, Mohamed Sadok; Gorsane, Faten

    2017-01-01

    Combining landscape ecology and genetics provides an excellent framework to appreciate pest population dynamics and dispersal. The genetic architectures of many species are always shaped by environmental constraints. Because little is known about the ecological and genetic traits of Tunisian whitefly populations, the main objective of this work is to highlight patterns of biodiversity, genetic structure and migration routes of this pest. We used nuclear microsatellite loci to analyze B. tabaci populations collected from various agricultural areas across the country and we determine their biotype status. Molecular data were subsequently interpreted in an ecological context supplied from a species distribution model to infer habitat suitability and hereafter the potential connection paths between sampling localities. An analysis of landscape resistance to B. tabaci genetic flow was thus applied to take into account habitat suitability, genetic relatedness and functional connectivity of habitats within a varied landscape matrix. We shed light on the occurrence of three geographically delineated genetic groups with high levels of genetic differentiation within each of them. Potential migration corridors of this pest were then established providing significant advances toward the understanding of genetic features and the dynamic dispersal of this pest. This study supports the hypothesis of a long-distance dispersal of B. tabaci followed by infrequent long-term isolations. The Inference of population sources and colonization routes is critical for the design and implementation of accurate management strategies against this pest.

  20. 7 CFR 319.8-20 - Importations by the Department of Agriculture.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Importations by the Department of Agriculture. 319.8-20 Section 319.8-20 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Foreign Cotton and...

  1. 7 CFR 319.8-20 - Importations by the Department of Agriculture.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Importations by the Department of Agriculture. 319.8-20 Section 319.8-20 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Foreign Cotton and...

  2. 7 CFR 319.8-20 - Importations by the Department of Agriculture.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Importations by the Department of Agriculture. 319.8-20 Section 319.8-20 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Foreign Cotton and...

  3. 7 CFR 319.8-20 - Importations by the Department of Agriculture.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Importations by the Department of Agriculture. 319.8-20 Section 319.8-20 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Foreign Cotton and...

  4. The Importance of Agriculture Science Course Sequencing in High Schools: A View from Collegiate Agriculture Students

    ERIC Educational Resources Information Center

    Wheelus, Robin P.

    2009-01-01

    The objective of this study was to investigate the importance of Agriculture Science course sequencing in high schools, as a preparatory factor for students enrolled in collegiate agriculture classes. With the variety of courses listed in the Texas Essential Knowledge and Skills (TEKS) for Agriculture Science, it has been possible for counselors,…

  5. Vulnerability of Rehabilitated Agricultural Production Systems to Invasion by Nontarget Plant Species

    NASA Astrophysics Data System (ADS)

    Baer, Sara G.; Engle, David M.; Knops, Johannes M. H.; Langeland, Kenneth A.; Maxwell, Bruce D.; Menalled, Fabian D.; Symstad, Amy J.

    2009-02-01

    Vast areas of arable land have been retired from crop production and “rehabilitated” to improved system states through landowner incentive programs in the United States (e.g., Conservation and Wetland Reserve Programs), as well as Europe (i.e., Agri-Environment Schemes). Our review of studies conducted on invasion of rehabilitated agricultural production systems by nontarget species elucidates several factors that may increase the vulnerability of these systems to invasion. These systems often exist in highly fragmented and agriculturally dominated landscapes, where propagule sources of target species for colonization may be limited, and are established under conditions where legacies of past disturbance persist and prevent target species from persisting. Furthermore, rehabilitation approaches often do not include or successfully attain all target species or historical ecological processes (e.g., hydrology, grazing, and/or fire cycles) key to resisting invasion. Uncertainty surrounds ways in which nontarget species may compromise long term goals of improving biodiversity and ecosystem services through rehabilitation efforts on former agricultural production lands. This review demonstrates that more studies are needed on the extent and ecological impacts of nontarget species as related to the goals of rehabilitation efforts to secure current and future environmental benefits arising from this widespread conservation practice.

  6. How to Tell How Important Agriculture Is to Your State.

    ERIC Educational Resources Information Center

    Schluter, Gerald; Edmondson, William

    1986-01-01

    Emphasizes agriculture's economic importance and lists the top 10 states according to 4 possible criteria for determining economic dependence on agriculture: number of food and fiber system jobs, number of farmworkers, proportion of food and fiber system jobs, and proportion of farmworkers to total food and fiber system jobs. (JHZ)

  7. The nuclear question: rethinking species importance in multi-species animal groups.

    PubMed

    Srinivasan, Umesh; Raza, Rashid Hasnain; Quader, Suhel

    2010-09-01

    1. Animals group for various benefits, and may form either simple single-species groups, or more complex multi-species associations. Multi-species groups are thought to provide anti-predator and foraging benefits to participant individuals. 2. Despite detailed studies on multi-species animal groups, the importance of species in group initiation and maintenance is still rated qualitatively as 'nuclear' (maintaining groups) or 'attendant' (species following nuclear species) based on species-specific traits. This overly simplifies and limits understanding of inherently complex associations, and is biologically unrealistic, because species roles in multi-species groups are: (i) likely to be context-specific and not simply a fixed species property, and (ii) much more variable than this dichotomy indicates. 3. We propose a new view of species importance (measured as number of inter-species associations), along a continuum from 'most nuclear' to 'least nuclear'. Using mixed-species bird flocks from a tropical rainforest in India as an example, we derive inter-species association measures from randomizations on bird species abundance data (which takes into account species 'availability') and data on 86 mixed-species flocks from two different flock types. Our results show that the number and average strength of inter-species associations covary positively, and we argue that species with many, strong associations are the most nuclear. 4. From our data, group size and foraging method are ecological and behavioural traits of species that best explain nuclearity in mixed-species bird flocks. Parallels have been observed in multi-species fish shoals, in which group size and foraging method, as well as diet, have been shown to correlate with nuclearity. Further, the context in which multi-species groups occur, in conjunction with species-specific traits, influences the role played by a species in a multi-species group, and this highlights the importance of extrinsic factors in

  8. Economic importance of bats in agriculture

    USGS Publications Warehouse

    Boyles, Justin G.; Cryan, Paul M.; McCracken, Gary F.; Kunz, Thomas H.

    2011-01-01

    White-nose syndrome (WNS) and the increased development of wind-power facilities are threatening populations of insectivorous bats in North America. Bats are voracious predators of nocturnal insects, including many crop and forest pests. We present here analyses suggesting that loss of bats in North America could lead to agricultural losses estimated at more than $3.7 billion/year. Urgent efforts are needed to educate the public and policy-makers about the ecological and economic importance of insectivorous bats and to provide practical conservation solutions.

  9. Salt tolerant green crop species for sodium management in space agriculture

    NASA Astrophysics Data System (ADS)

    Yamashita, Masamichi; Hashimoto, Hirofumi; Tomita-Yokotani, Kaori; Shimoda, Toshifumi; Nose, Akihiro; Space Agriculture Task Force, J.

    Ecological system and materials recycling loop of space agriculture are quite tight compared to natural ecological system on Earth. Sodium management will be a keen issue for space agricul-ture. Human nutritional requirements include sodium salt. Since sodium at high concentration is toxic for most of plant growth, excreted sodium of human waste should be removed from compost fertilizer. Use of marine algae is promising for harvesting potassium and other min-erals required for plant growth and returning remained sodium to satisfy human need of its intake. Farming salt tolerant green crop species is another approach to manage sodium problem in both space and terrestrial agriculture. We chose ice plant and New Zealand spinach. These two plant species are widely accepted green vegetable with many recipe. Ice plant can grow at the salinity level of sea water, and contain sodium salt up to 30% of its dry mass. Sodium distributes mainly in its bladder cells. New Zealand spinach is a plant species found in the front zone of sea shore, and tolerant against high salinity as well. Plant body size of both species at harvest is quite large, and easy to farm. Capability of bio-remediation of high saline soil is examined with ice plant and New Zealand spinach. Incubation medium was chosen to contain high concentration of sodium and potassium at the Na/K ratio of human excreta. In case Na/K ratio of plant body grown by this medium is greatly higher than that of incubation medium or soil, these halophytes are effective to remediate soil for farming less tolerant plant crop. Experimental results was less positive in this context.

  10. Historic Mining and Agriculture as Indicators of Occurrence and Abundance of Widespread Invasive Plant Species

    PubMed Central

    Calinger, Kellen; Calhoon, Elisabeth; Chang, Hsiao-chi; Whitacre, James; Wenzel, John; Comita, Liza; Queenborough, Simon

    2015-01-01

    Anthropogenic disturbances often change ecological communities and provide opportunities for non-native species invasion. Understanding the impacts of disturbances on species invasion is therefore crucial for invasive species management. We used generalized linear mixed effects models to explore the influence of land-use history and distance to roads on the occurrence and abundance of two invasive plant species (Rosa multiflora and Berberis thunbergii) in a 900-ha deciduous forest in the eastern U.S.A., the Powdermill Nature Reserve. Although much of the reserve has been continuously forested since at least 1939, aerial photos revealed a variety of land-uses since then including agriculture, mining, logging, and development. By 2008, both R. multiflora and B. thunbergii were widespread throughout the reserve (occurring in 24% and 13% of 4417 10-m diameter regularly-placed vegetation plots, respectively) with occurrence and abundance of each varying significantly with land-use history. Rosa multiflora was more likely to occur in historically farmed, mined, logged or developed plots than in plots that remained forested, (log odds of 1.8 to 3.0); Berberis thunbergii was more likely to occur in plots with agricultural, mining, or logging history than in plots without disturbance (log odds of 1.4 to 2.1). Mining, logging, and agriculture increased the probability that R. multiflora had >10% cover while only past agriculture was related to cover of B. thunbergii. Proximity to roads was positively correlated with the occurrence of R. multiflora (a 0.26 increase in the log odds for every 1-m closer) but not B. thunbergii, and roads had no impact on the abundance of either species. Our results indicated that a wide variety of disturbances may aid the introduction of invasive species into new habitats, while high-impact disturbances such as agriculture and mining increase the likelihood of high abundance post-introduction. PMID:26046534

  11. A Cross-Sectional Analysis of the Importance of Agricultural Mechanics Skills Taught

    ERIC Educational Resources Information Center

    Rasty, John R.; Anderson, Ryan G.

    2014-01-01

    In 1994, Laird conducted a study using secondary agricultural education teachers across the United States to determine the depth agricultural mechanics skills were being taught at the time, and how important those skills would be in 2004. The researchers conducted a follow up study in 2016, using secondary agricultural education teachers in Iowa…

  12. How the Quantity of Agricultural Mechanics Training Received at the Secondary Level Impact Teacher Perceived Importance of Agricultural Mechanics Skills

    ERIC Educational Resources Information Center

    Rasty, John; Anderson, Ryan G.; Paulsen, Thomas H.

    2017-01-01

    Preservice teacher candidates in agricultural education have expressed concerns with teaching agricultural mechanics content yet the number of required courses in agricultural mechanics has dwindled. To determine the root of current teachers' perceptions, it is important to look at the developmental experiences that have led to those perceptions.…

  13. Diversity of the Neglected and Underutilized Crop Species of Importance in Benin

    PubMed Central

    Dansi, A.; Vodouhè, R.; Azokpota, P.; Yedomonhan, H.; Assogba, P.; Adjatin, A.; Loko, Y. L.; Dossou-Aminon, I.; Akpagana, K.

    2012-01-01

    Many of the plant species that are cultivated for food across the world are neglected and underutilized. To assess their diversity in Benin and identify the priority species and establish their research needs, a survey was conducted in 50 villages distributed throughout the country. The study revealed 41 neglected and underutilized crop species (NUCS) among which 19 were identified as of priority base on 10 criteria among which included their extent and degree of consumption. Reasons for neglect vary with the producers and the agricultural technicians. Market surveys revealed that NUCS are important source of household incomes and substantially contribute to poverty reduction. Review of the literature available revealed that most of the species are rich in nutrients and have some proven medicinal values and the promotion of their use would help in combating malnutrition and improving the health status of the local populations. The knowledge gaps and research needs are immense on most of the species identified as no concrete scientific data is nationally available. In terms of research, almost all has to be done starting from basic ethnobotanical investigation. The results will help the scientists and students willing to conduct research on NUCS in Benin to better orient their research programs. PMID:22593712

  14. The importance of bees in natural and agricultural ecosystems

    Treesearch

    Paul Rhoades

    2013-01-01

    As the world’s most important group of pollinators, bees are a crucial part of agricultural production and natural ecosystem function. Bees and the pollination they provide are relevant to the nursery industry because of their role in the performance of seed increase plots as well as the importance of pollination in supporting persistent plant communities in restored...

  15. Residual susceptibility of the red imported fire ant (Hymenoptera: Formicidae) to four agricultural insecticides.

    PubMed

    Seagraves, Michael P; McPherson, Robert M

    2003-06-01

    The red imported fire ant, Solenopsis invicta Buren, is an abundant predator in cropping systems throughout its range. It has been documented to be an important predator of numerous crop pests, as well as being an agricultural pest itself. Information on the impact of insecticides on natural enemies such as fire ants is necessary for the integration of biological and chemical control tactics in an effective pest management program. Therefore, a residual vial bioassay was developed to determine the concentration-mortality responses of S. invicta workers to four commonly used insecticides: acephate, chlorpyrifos, methomyl and lambda-cyhalothrin. Fire ant workers showed a mortality response to serial dilutions to all four chemicals. Methomyl (LC50 0.04 microg/vial, fiducial limits 0.03-0.06) was the most toxic, followed by chlorpyrifos (LC50 0.11 microg/vial, fiducial limits 0.07-0.17) and acephate (LC50 0.76 microg/vial, fiducial limits 0.50-1.04). Of the chemicals assayed, it took a much higher concentration of lambda-cyhalothrin (LC50 2.30 microg/vial, fiducial limits 1.57-3.59) to kill 50% of the workers compared with the other three chemicals. The results of this study demonstrate the wide range in responses of fire ants to four insecticides that are labeled and commonly used on numerous agricultural crops throughout the United States. These results further suggest the possibility of using a discriminating dose of lambda-cyhalothrin to control the target pest species while conserving fire ants in the agricultural systems in which their predatory behavior is beneficial to the integrated pest management program.

  16. Perceptions of Vocational Agriculture Instructors Regarding Knowledge and Importance of Including Selected Agricultural Mechanics Units in the Vocational Agriculture Program.

    ERIC Educational Resources Information Center

    Heimgartner, Dale C.; Foster, Richard M.

    1981-01-01

    A survey of teachers in five northwestern states revealed that respondents in all states rated the units of arc welding and oxyacetylene welding as the most important units to be included in secondary vocational agriculture programs. (LRA)

  17. The Importance of Species Traits for Species Distribution on Oceanic Islands

    PubMed Central

    Vazačová, Kristýna; Münzbergová, Zuzana

    2014-01-01

    Understanding species' ability to colonize new habitats is a key knowledge allowing us to predict species' survival in the changing landscapes. However, most studies exploring this topic observe distribution of species in landscapes which are under strong human influence being fragmented only recently and ignore the fact that the species distribution in these landscapes is far from equilibrium. Oceanic islands seem more appropriate systems for studying the relationship between species traits and its distribution as they are fragmented without human contribution and as they remained unchanged for a long evolutionary time. In our study we compared the values of dispersal as well as persistence traits among 18 species pairs from the Canary Islands differing in their distribution within the archipelago. The data were analyzed both with and without phylogenetic correction. The results demonstrate that no dispersal trait alone can explain the distribution of the species in the system. They, however, also suggest that species with better dispersal compared to their close relatives are better colonizers. Similarly, abundance of species in the archipelago seems to be an important predictor of species colonization ability only when comparing closely related species. This implies that analyses including phylogenetic correction may provide different insights than analyses without such a correction and both types of analyses should be combined to understand the importance of various plant traits for species colonization ability. PMID:25003737

  18. Proceedings, 22nd U.S. Department of Agriculture interagency research forum on invasive species 2011

    Treesearch

    Katherine A McManus; Kurt W., eds. Gottschalk

    2011-01-01

    Contains abstracts and papers of 62 oral and poster presentations on invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Invasive Species.

  19. Proceedings 19th U.S. Department of Agriculture Interagency Research Forum on Invasive Species 2008

    Treesearch

    Katherine A. McManus; Kurt W., eds. Gottschalk

    2009-01-01

    Contains abstracts and papers of 67 oral and poster presentations on invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Invasive Species.

  20. Proceedings, 21st U.S. Department of Agriculture interagency research forum on invasive species 2010

    Treesearch

    Katherine A McManus; Kurt W. Gottschalk

    2010-01-01

    Contains abstracts and papers of 95 oral and poster presentations on invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Invasive Species.

  1. Proceedings, 23rd U.S. Department of Agriculture interagency research forum on invasive species 2012

    Treesearch

    Katherine A McManus; Kurt W., eds. Gottschalk

    2013-01-01

    Contains abstracts and papers of 75 oral and poster presentations on invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Invasive Species.

  2. Restoring abandoned agricultural lands in cold desert shrublands: Tradeoffs between water availability and invasive species

    Treesearch

    Jeanne C. Chambers; Eric P. Eldredge; Keirith A. Snyder; David I. Board; Tara Forbis de Queiroz; Vada Hubbard

    2014-01-01

    Restoration of abandoned agricultural lands to create resilient ecosystems in arid and semi-arid ecosystems typically requires seeding or transplanting native species, improving plant-soil-water relations, and controlling invasive species. We asked if improving water relations via irrigation or surface mulch would result in negative tradeoffs between native species...

  3. Selected historic agricultural data important to environmental quality in the United States

    USGS Publications Warehouse

    Grey, Katia M.; Capel, Paul D.; Baker, Nancy T.; Thelin, Gail P.

    2012-01-01

    This report and the accompanying tables summarize some of the important changes in American agriculture in the form of a timeline and a compilation of selected annual time-series data that can be broadly related to environmental quality. Although these changes have been beneficial for increasing agricultural production, some of them have resulted in environmental concerns. The agriculture timeline is divided into four categories (1) crop and animal changes, (2) mechanical changes, (3) biological and chemical changes, and (4) regulatory and societal changes. The timeline attempts to compile events that have had a lasting impact on agriculture in the United States. The events and data presented in this report may help to improve the connections between agricultural activist and environmental concerns.

  4. Importance and Capability of Teaching Agricultural Mechanics as Perceived by Secondary Agricultural Educators

    ERIC Educational Resources Information Center

    Shultz, Matthew J.; Anderson, Ryan G.; Shultz, Alyx M.; Paulsen, Thomas H.

    2014-01-01

    Agricultural mechanics instruction is a long-standing and significant part of secondary agricultural education. Similar to the broader agricultural industry, agricultural mechanics instruction is in a constant state of dynamic change. Educators must be proactive to ensure agricultural mechanics curriculum retains its relevance within this changing…

  5. Avian Species and Functional Diversity in Agricultural Landscapes: Does Landscape Heterogeneity Matter?

    PubMed

    Lee, Myung-Bok; Martin, James A

    2017-01-01

    While the positive relationship between avian diversity and habitat heterogeneity is widely accepted, it is primarily based on observed species richness without accounting for imperfect detection. Other facets of diversity such as functional diversity are also rarely explored. We investigated the avian diversity-landscape heterogeneity relationship in agricultural landscapes by considering two aspects of diversity: taxonomic diversity (species richness) estimated from a multi-species dynamic occupancy model, and functional diversity (functional evenness [FEve] and divergence [FDiv]) based on traits of occurring species. We also assessed how agricultural lands enrolled in a conservation program managed on behalf of declining early successional bird species (hereafter CP38 fields, an agri-environment scheme) influenced avian diversity. We analyzed breeding bird data collected at CP38 fields in Mississippi, USA, during 2010-2012, and two principal components of environmental variables: a gradient of heterogeneity (Shannon's landscape diversity index) and of the amount of CP38 fields (percent cover of CP38 fields; CP38). FEve did not show significant responses to environmental variables, whereas FDiv responded positively to heterogeneity and negatively to CP38. However, most FDiv values did not significantly differ from random expectations along an environmental gradient. When there was a significant difference, FDiv was lower than that expected. Unlike functional diversity, species richness showed a clear pattern. Species richness increased with increasing landscape heterogeneity but decreased with increasing amounts of CP38 fields. Only one species responded negatively to heterogeneity and positively to CP38. Our results suggest that the relationships between avian diversity and landscape heterogeneity may vary depending on the aspect of diversity considered: strong positive effects of heterogeneity on taxonomic diversity, but weakly positive or non

  6. Trichoderma Biodiversity of Agricultural Fields in East China Reveals a Gradient Distribution of Species

    PubMed Central

    Chen, Jing; Mao, Li-Juan; Feng, Xiao-Xiao; Zhang, Chu-Long; Lin, Fu-Cheng

    2016-01-01

    We surveyed the Trichoderma (Hypocreales, Ascomycota) biodiversity in agricultural fields in four major agricultural provinces of East China. Trichoderma strains were identified based on molecular approaches and morphological characteristics. In three sampled seasons (spring, summer and autumn), 2078 strains were isolated and identified to 17 known species: T. harzianum (429 isolates), T. asperellum (425), T. hamatum (397), T. virens (340), T. koningiopsis (248), T. brevicompactum (73), T. atroviride (73), T. fertile (26), T. longibrachiatum (22), T. pleuroticola (16), T. erinaceum (16), T. oblongisporum (2), T. polysporum (2), T. spirale (2), T. capillare (2), T. velutinum (2), and T. saturnisporum (1). T. harzianum, T. asperellum, T. hamatum, and T. virens were identified as the dominant species with dominance (Y) values of 0.057, 0.052, 0.048, and 0.039, respectively. The species amount, isolate numbers and the dominant species of Trichoderma varied between provinces. Zhejiang Province has shown the highest diversity, which was reflected in the highest species amount (14) and the highest Shannon–Wiener diversity index of Trichoderma haplotypes (1.46). We observed that relative frequencies of T. hamatum and T. koningiopsis under rice soil were higher than those under wheat and maize soil, indicating the preference of Trichoderma to different crops. Remarkable seasonal variation was shown, with summer exhibiting the highest biodiversity of the studied seasons. These results show that Trichoderma biodiversity in agricultural fields varies by region, crop, and season. Zhejiang Province (the southernmost province in the investigated area) had more T. hamatum than Shandong Province (the northernmost province), not only in isolate amounts but also in haplotype amounts. Furthermore, at haplotype level, only T. hamatum showed a gradient distribution from south to north in correspondence analysis among the four dominant species. The above results would contribute to the

  7. Trichoderma Biodiversity of Agricultural Fields in East China Reveals a Gradient Distribution of Species.

    PubMed

    Jiang, Yuan; Wang, Jin-Liang; Chen, Jing; Mao, Li-Juan; Feng, Xiao-Xiao; Zhang, Chu-Long; Lin, Fu-Cheng

    2016-01-01

    We surveyed the Trichoderma (Hypocreales, Ascomycota) biodiversity in agricultural fields in four major agricultural provinces of East China. Trichoderma strains were identified based on molecular approaches and morphological characteristics. In three sampled seasons (spring, summer and autumn), 2078 strains were isolated and identified to 17 known species: T. harzianum (429 isolates), T. asperellum (425), T. hamatum (397), T. virens (340), T. koningiopsis (248), T. brevicompactum (73), T. atroviride (73), T. fertile (26), T. longibrachiatum (22), T. pleuroticola (16), T. erinaceum (16), T. oblongisporum (2), T. polysporum (2), T. spirale (2), T. capillare (2), T. velutinum (2), and T. saturnisporum (1). T. harzianum, T. asperellum, T. hamatum, and T. virens were identified as the dominant species with dominance (Y) values of 0.057, 0.052, 0.048, and 0.039, respectively. The species amount, isolate numbers and the dominant species of Trichoderma varied between provinces. Zhejiang Province has shown the highest diversity, which was reflected in the highest species amount (14) and the highest Shannon-Wiener diversity index of Trichoderma haplotypes (1.46). We observed that relative frequencies of T. hamatum and T. koningiopsis under rice soil were higher than those under wheat and maize soil, indicating the preference of Trichoderma to different crops. Remarkable seasonal variation was shown, with summer exhibiting the highest biodiversity of the studied seasons. These results show that Trichoderma biodiversity in agricultural fields varies by region, crop, and season. Zhejiang Province (the southernmost province in the investigated area) had more T. hamatum than Shandong Province (the northernmost province), not only in isolate amounts but also in haplotype amounts. Furthermore, at haplotype level, only T. hamatum showed a gradient distribution from south to north in correspondence analysis among the four dominant species. The above results would contribute to the

  8. Importance of impacts scenarios for the adaptation of agriculture to climate change

    NASA Astrophysics Data System (ADS)

    Zullo, J.; Macedo, C.; Pinto, H. S.; Assad, E. D.; Koga Vicente, A.

    2012-12-01

    The great possibility that the climate is already changing, and the most drastic way possible, increases the challenge of agricultural engineering, especially in environmentally vulnerable areas and in regions where agriculture has a high economic and social importance. Knowledge of potential impacts that may be caused by changes in water and thermal regimes in coming decades is increasingly strategic, as they allow the development of techniques to adapt agriculture to climate change and therefore minimizes the risk of undesirable impacts, for example, in food and nutritional security. Thus, the main objective of this paper is to describe a way to generate impacts scenarios caused by anomalies of precipitation and temperature in the definition of climate risk zoning of an agricultural crop very important in the tropics, such as the sugar cane, especially in central-southern Brazil, which is one of its main world producers. A key point here is the choice of the climate model to be used, considering that 23 different models were used in the fourth IPCC report published in 2007. The number and range of available models requires the definition of criteria for choosing the most suitable for the preparation of the impacts scenarios. One way proposed and used in this work is based on the definition of two groups of models according to 27 technical attributes of them. The clustering of 23 models in two groups, with a model representing each group (UKMO_HadCM3 and MIROC3.2_medres), assists the generation and comparison of impacts scenarios, making them more representative and useful. Another important aspect in the generation of impacts scenarios is the estimate of the relative importance of the anomalies of precipitation and temperature, which are the most commonly used. To assess the relative importance of the anomalies are generated scenarios considering an anomaly at a time and both together. The impacts scenarios for a high emission of greenhouse gases (A2), from 2010

  9. How hedge woody species diversity and habitat change is a function of land use history and recent management in a European agricultural landscape.

    PubMed

    McCann, Thomas; Cooper, Alan; Rogers, David; McKenzie, Paul; McErlean, Thomas

    2017-07-01

    European hedged agricultural landscapes provide a range of ecosystem services and are an important component of cultural and biodiversity heritage. This paper investigates the extent of hedges, their woody species diversity (including the influence of historical versus recent hedge origin) and dynamics of change. The rationale is to contribute to an ecological basis for hedge habitat management. Sample sites were allocated based on a multivariate classification of landscape attributes. All field boundaries present in each site were mapped and surveyed in 1998 and 2007. To assess diversity, a list of all woody species was recorded in one standard 30 m linear plot within each hedge. There was a net decrease in hedge habitat extent, mainly as a result of removal, and changes between hedges and other field boundary types due to the development and loss of shrub growth-form. Agricultural intensification, increased rural building, and variation in hedge management practices were the main drivers of change. Hedges surveyed at baseline, which were lost at resurvey, were more species rich than new hedges gained. Hedges coinciding with historical land unit boundaries of likely Early Medieval origin were found to be more species rich. The most frequent woody species in hedges were native, including a high proportion with Fraxinus excelsior, a species under threat from current and emerging plant pests and pathogens. Introduced species were present in circa 30% of hedges. We conclude that since hedge habitat distribution and woody species diversity is a function of ecology and anthropogenic factors, the management of hedges in enclosed agricultural landscapes requires an integrated approach. Copyright © 2017 Elsevier Ltd. All rights reserved.

  10. Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species.

    PubMed

    Menardo, Fabrizio; Praz, Coraline R; Wyder, Stefan; Ben-David, Roi; Bourras, Salim; Matsumae, Hiromi; McNally, Kaitlin E; Parlange, Francis; Riba, Andrea; Roffler, Stefan; Schaefer, Luisa K; Shimizu, Kentaro K; Valenti, Luca; Zbinden, Helen; Wicker, Thomas; Keller, Beat

    2016-02-01

    Throughout the history of agriculture, many new crop species (polyploids or artificial hybrids) have been introduced to diversify products or to increase yield. However, little is known about how these new crops influence the evolution of new pathogens and diseases. Triticale is an artificial hybrid of wheat and rye, and it was resistant to the fungal pathogen powdery mildew (Blumeria graminis) until 2001 (refs. 1,2,3). We sequenced and compared the genomes of 46 powdery mildew isolates covering several formae speciales. We found that B. graminis f. sp. triticale, which grows on triticale and wheat, is a hybrid between wheat powdery mildew (B. graminis f. sp. tritici) and mildew specialized on rye (B. graminis f. sp. secalis). Our data show that the hybrid of the two mildews specialized on two different hosts can infect the hybrid plant species originating from those two hosts. We conclude that hybridization between mildews specialized on different species is a mechanism of adaptation to new crops introduced by agriculture.

  11. The angiosperm phloem sieve tube system: a role in mediating traits important to modern agriculture.

    PubMed

    Ham, Byung-Kook; Lucas, William J

    2014-04-01

    The plant vascular system serves a vital function by distributing water, nutrients and hormones essential for growth and development to the various organs of the plant. In this review, attention is focused on the role played by the phloem as the conduit for delivery of both photosynthate and information macromolecules, especially from the context of its mediation in traits that are important to modern agriculture. Resource allocation of sugars and amino acids, by the phloem, to specific sink tissues is of importance to crop yield and global food security. Current findings are discussed in the context of a hierarchical control network that operates to integrate resource allocation to competing sinks. The role of plasmodesmata that connect companion cells to neighbouring sieve elements and phloem parenchyma cells is evaluated in terms of their function as valves, connecting the sieve tube pressure manifold system to the various plant tissues. Recent studies have also revealed that plasmodesmata and the phloem sieve tube system function cooperatively to mediate the long-distance delivery of proteins and a diverse array of RNA species. Delivery of these information macromolecules is discussed in terms of their roles in control over the vegetative-to-floral transition, tuberization in potato, stress-related signalling involving miRNAs, and genetic reprogramming through the delivery of 24-nucleotide small RNAs that function in transcriptional gene silencing in recipient sink organs. Finally, we discuss important future research areas that could contribute to developing agricultural crops with engineered performance characteristics for enhance yield potential.

  12. Agricultural ponds support amphibian populations

    USGS Publications Warehouse

    Knutson, M.G.; Richardson, W.B.; Reineke, D.M.; Gray, B.R.; Parmelee, J.R.; Weick, S.E.

    2004-01-01

    In some agricultural regions, natural wetlands are scarce, and constructed agricultural ponds may represent important alternative breeding habitats for amphibians. Properly managed, these agricultural ponds may effectively increase the total amount of breeding habitat and help to sustain populations. We studied small, constructed agricultural ponds in southeastern Minnesota to assess their value as amphibian breeding sites. Our study examined habitat factors associated with amphibian reproduction at two spatial scales: the pond and the landscape surrounding the pond. We found that small agricultural ponds in southeastern Minnesota provided breeding habitat for at least 10 species of amphibians. Species richness and multispecies reproductive success were more closely associated with characteristics of the pond (water quality, vegetation, and predators) compared with characteristics of the surrounding landscape, but individual species were associated with both pond and landscape variables. Ponds surrounded by row crops had similar species richness and reproductive success compared with natural wetlands and ponds surrounded by nongrazed pasture. Ponds used for watering livestock had elevated concentrations of phosphorus, higher turbidity, and a trend toward reduced amphibian reproductive success. Species richness was highest in small ponds, ponds with lower total nitrogen concentrations, tiger salamanders (Ambystoma tigrinum) present, and lacking fish. Multispecies reproductive success was best in ponds with lower total nitrogen concentrations, less emergent vegetation, and lacking fish. Habitat factors associated with higher reproductive success varied among individual species. We conclude that small, constructed farm ponds, properly managed, may help sustain amphibian populations in landscapes where natural wetland habitat is rare. We recommend management actions such as limiting livestock access to the pond to improve water quality, reducing nitrogen input, and

  13. Avian Species and Functional Diversity in Agricultural Landscapes: Does Landscape Heterogeneity Matter?

    PubMed Central

    2017-01-01

    While the positive relationship between avian diversity and habitat heterogeneity is widely accepted, it is primarily based on observed species richness without accounting for imperfect detection. Other facets of diversity such as functional diversity are also rarely explored. We investigated the avian diversity-landscape heterogeneity relationship in agricultural landscapes by considering two aspects of diversity: taxonomic diversity (species richness) estimated from a multi-species dynamic occupancy model, and functional diversity (functional evenness [FEve] and divergence [FDiv]) based on traits of occurring species. We also assessed how agricultural lands enrolled in a conservation program managed on behalf of declining early successional bird species (hereafter CP38 fields, an agri-environment scheme) influenced avian diversity. We analyzed breeding bird data collected at CP38 fields in Mississippi, USA, during 2010–2012, and two principal components of environmental variables: a gradient of heterogeneity (Shannon’s landscape diversity index) and of the amount of CP38 fields (percent cover of CP38 fields; CP38). FEve did not show significant responses to environmental variables, whereas FDiv responded positively to heterogeneity and negatively to CP38. However, most FDiv values did not significantly differ from random expectations along an environmental gradient. When there was a significant difference, FDiv was lower than that expected. Unlike functional diversity, species richness showed a clear pattern. Species richness increased with increasing landscape heterogeneity but decreased with increasing amounts of CP38 fields. Only one species responded negatively to heterogeneity and positively to CP38. Our results suggest that the relationships between avian diversity and landscape heterogeneity may vary depending on the aspect of diversity considered: strong positive effects of heterogeneity on taxonomic diversity, but weakly positive or non

  14. Comparisons of diazotrophic communities in native and agricultural desert ecosystems reveal plants as important drivers in diversity

    PubMed Central

    Köberl, Martina; Erlacher, Armin; Ramadan, Elshahat M.; El-Arabi, Tarek F.; Müller, Henry; Bragina, Anastasia; Berg, Gabriele

    2015-01-01

    Diazotrophs provide the only biological source of fixed atmospheric nitrogen in the biosphere. Although they are the key player for plant-available nitrogen, less is known about their diversity and potential importance in arid ecosystems. We investigated the nitrogenase gene diversity in native and agricultural desert soil as well as within root-associated microbiota of medicinal plants grown in Egypt through the combination of nifH-specific qPCR, fingerprints, amplicon pyrosequencing and fluorescence in situ hybridization–confocal laser scanning microscopy. Although the diazotrophic microbiota were characterized by generally high abundances and diversity, statistically significant differences were found between both soils, the different microhabitats, and between the investigated plants (Matricaria chamomilla L., Calendula officinalis L. and Solanum distichum Schumach. and Thonn.). We observed a considerable community shift from desert to agriculturally used soil that demonstrated a higher abundance and diversity in the agro-ecosystem. The endorhiza was characterized by lower abundances and only a subset of species when compared to the rhizosphere. While the microbiomes of the Asteraceae were similar and dominated by potential root-nodulating rhizobia acquired primarily from soil, the perennial S. distichum generally formed associations with free-living nitrogen fixers. These results underline the importance of diazotrophs in desert ecosystems and additionally identify plants as important drivers in functional gene pool diversity. PMID:26705571

  15. Comparisons of diazotrophic communities in native and agricultural desert ecosystems reveal plants as important drivers in diversity.

    PubMed

    Köberl, Martina; Erlacher, Armin; Ramadan, Elshahat M; El-Arabi, Tarek F; Müller, Henry; Bragina, Anastasia; Berg, Gabriele

    2016-02-01

    Diazotrophs provide the only biological source of fixed atmospheric nitrogen in the biosphere. Although they are the key player for plant-available nitrogen, less is known about their diversity and potential importance in arid ecosystems. We investigated the nitrogenase gene diversity in native and agricultural desert soil as well as within root-associated microbiota of medicinal plants grown in Egypt through the combination of nifH-specific qPCR, fingerprints, amplicon pyrosequencing and fluorescence in situ hybridization-confocal laser scanning microscopy. Although the diazotrophic microbiota were characterized by generally high abundances and diversity, statistically significant differences were found between both soils, the different microhabitats, and between the investigated plants (Matricaria chamomilla L., Calendula officinalis L. and Solanum distichum Schumach. and Thonn.). We observed a considerable community shift from desert to agriculturally used soil that demonstrated a higher abundance and diversity in the agro-ecosystem. The endorhiza was characterized by lower abundances and only a subset of species when compared to the rhizosphere. While the microbiomes of the Asteraceae were similar and dominated by potential root-nodulating rhizobia acquired primarily from soil, the perennial S. distichum generally formed associations with free-living nitrogen fixers. These results underline the importance of diazotrophs in desert ecosystems and additionally identify plants as important drivers in functional gene pool diversity. © FEMS 2015.

  16. 9 CFR 93.912 - Import permits.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Aquatic Animal Species General Provisions for Vhs-Regulated Fish Species... and Plant Health Inspection Service, Veterinary Services, National Center for Import and Export, 4700...

  17. 9 CFR 93.912 - Import permits.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE... CONVEYANCE AND SHIPPING CONTAINERS Aquatic Animal Species General Provisions for Vhs-Regulated Fish Species... and Plant Health Inspection Service, Veterinary Services, National Center for Import and Export, 4700...

  18. Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

    USDA-ARS?s Scientific Manuscript database

    Adaptation to human-induced environmental change has the potential to profoundly influence the genomic architecture of affected species. This is particularly true in agricultural ecosystems, where anthropogenic selection pressure is strong. Heliothis virescens feeds on cotton in its larval stages a...

  19. Proceedings, U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2002

    Treesearch

    Sandra L. C. Fosbroke; Kurt W. Gottschalk; [Editors

    2003-01-01

    Contains 75 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Gypsy Moth and Other Invasive Species.

  20. Proceedings, U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2003

    Treesearch

    Kurt W., ed. Gottschalk

    2004-01-01

    Contains 56 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Gypsy Moth and Other Invasive Species.

  1. Proceedings, U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2001

    Treesearch

    Sandra L.C. Fosbroke; Kurt W., Gottschalk

    2001-01-01

    Contains 68 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture interagency research forum of gypsy moth and other invasive species.

  2. Systematic development of Phytophthora species-specific mitochondrial diagnostic markers for economically important members of the genus

    USDA-ARS?s Scientific Manuscript database

    The genus Phytophthora contains many invasive species to the USA that have the potential to cause significant damage to agriculture and native ecosystems. A genus and species-specific diagnostic assay was previously reported based on mitochondrial gene order differences that allowed for the systemat...

  3. Isozyme and allozyme markers distinguishing two morphologically similar, medically important Mastomys species (Rodentia: Muridae)

    PubMed Central

    Smit, Andre A; Van der Bank, Herman FH

    2001-01-01

    Background Two common southern African mice species, Mastomys coucha and M. natalensis, are widely distributed throughout the subregion and overlap in many areas. They also share a high degree of morphological similarity, making them impossible to distinguish in the field at present. These multimammate mice are documented carriers of serious disease vectors causing Lassa fever, plague and encephalomyocarditis, which coupled to their cohabitation with humans in many areas, could pose a significant health risk. A preliminary study reported the presence of isozyme markers at three loci (GPI-2, PT-2, -3) in one population each of M. coucha and M. natalensis. Two additional populations (from the Vaal Dam and Richards Bay) were sampled to determine the reliability of these markers, and to seek additional genetic markers. Results Fifteen proteins or enzymes provided interpretable results at a total of 39 loci. Additional fixed allele differences between the species were detected at AAT-1, ADH, EST-1, PGD-1, Hb-1 and -2. Average heterozygosities for M. coucha and M. natalensis were calculated as 0.018 and 0.032 respectively, with a mean genetic distance between the species of 0.26. Conclusions The confirmation of the isozyme and the detection of the additional allozyme markers are important contributions to the identification of these two medical and agricultural pest species. PMID:11696236

  4. Montane and coastal species diversification in the economically important Mexican grasshopper genus Sphenarium (Orthoptera: Pyrgomorphidae).

    PubMed

    Pedraza-Lara, Carlos; Barrientos-Lozano, Ludivina; Rocha-Sánchez, Aurora Y; Zaldívar-Riverón, Alejandro

    2015-03-01

    The genus Sphenarium (Pyrgomorphidae) is a small group of grasshoppers endemic to México and Guatemala that are economically and culturally important both as a food source and as agricultural pests. However, its taxonomy has been largely neglected mainly due to its conserved interspecific external morphology and the considerable intraspecific variation in colour pattern of some taxa. Here we examined morphological as well as mitochondrial and nuclear DNA sequence data to assess the species boundaries and evolutionary history in Sphenarium. Our morphological identification and DNA sequence-based species delimitation, carried out with three different approaches (DNA barcoding, general mixed Yule-coalescent model, Bayesian species delimitation), all recovered a higher number of putative species of Sphenarium than previously recognised. We unambiguously delimit seven species, and between five and ten additional species depending on the data/method analysed. Phylogenetic relationships within the genus strongly support two main clades, one exclusively montane, the other coastal. Divergence time estimates suggest late Miocene to Pliocene ages for the origin and most of the early diversification events in the genus, which were probably influenced by the formation of the Trans-Mexican Volcanic Belt. A series of Pleistocene events could have led to the current species diversification in both montane and coastal regions. This study not only reveals an overlooked species richness for the most popular edible insect in Mexico, but also highlights the influence of the dynamic geological and climatic history of the region in shaping its current diversity. Copyright © 2015 Elsevier Inc. All rights reserved.

  5. DNA Barcodes for Forensically Important Fly Species in Brazil.

    PubMed

    Koroiva, Ricardo; de Souza, Mirian S; Roque, Fabio de Oliveira; Pepinelli, Mateus

    2018-04-07

    Here, we analyze 248 DNA barcode sequences of 35 fly species of forensic importance in Brazil. DNA barcoding can be effectively used for specimen identification of these species, allowing the unambiguous identification of 31 species, an overall success rate of 88%. Our results show a high rate of success for molecular identification using DNA barcoding sequences and open new perspectives for immature species identification, a subject on which limited forensic investigations exist in Tropical regions. We also address the implications of building a robust forensic DNA barcode database. A geographic bias is recognized for the COI dataset available for forensically important fly species in Brazil, with concentration of sequences from specimens collected mainly in sites located in the Cerrado, Mata Atlântica, and Pampa biomes.

  6. SPECIES DISTRIBUTIONS, SURROGACY, AND IMPORTANT CONSERVATION REGIONS IN CANADA

    EPA Science Inventory

    Conservation actions could be more efficient if there is congruence among taxa in the distribution of species. Patterns in the geographic distribution of species of six taxa were used to identify nationally important sites for conservation in Canada. Species richness and a meas...

  7. Biology: An Important Agricultural Engineering Mechanism

    ERIC Educational Resources Information Center

    Henderson, S. M.

    1974-01-01

    Describes the field of bioengineering with particular emphasis on agricultural engineering, and presents the results of a survey of schools that combine biology and engineering in their curricula. (JR)

  8. Using abiotic variables to predict importance of sites for species representation.

    PubMed

    Albuquerque, Fabio; Beier, Paul

    2015-10-01

    In systematic conservation planning, species distribution data for all sites in a planning area are used to prioritize each site in terms of the site's importance toward meeting the goal of species representation. But comprehensive species data are not available in most planning areas and would be expensive to acquire. As a shortcut, ecologists use surrogates, such as occurrences of birds or another well-surveyed taxon, or land types defined from remotely sensed data, in the hope that sites that represent the surrogates also represent biodiversity. Unfortunately, surrogates have not performed reliably. We propose a new type of surrogate, predicted importance, that can be developed from species data for a q% subset of sites. With species data from this subset of sites, importance can be modeled as a function of abiotic variables available at no charge for all terrestrial areas on Earth. Predicted importance can then be used as a surrogate to prioritize all sites. We tested this surrogate with 8 sets of species data. For each data set, we used a q% subset of sites to model importance as a function of abiotic variables, used the resulting function to predict importance for all sites, and evaluated the number of species in the sites with highest predicted importance. Sites with the highest predicted importance represented species efficiently for all data sets when q = 25% and for 7 of 8 data sets when q = 20%. Predicted importance requires less survey effort than direct selection for species representation and meets representation goals well compared with other surrogates currently in use. This less expensive surrogate may be useful in those areas of the world that need it most, namely tropical regions with the highest biodiversity, greatest biodiversity loss, most severe lack of inventory data, and poorly developed protected area networks. © 2015 Society for Conservation Biology.

  9. Biodiversity in Organic Farmland - How Does Landscape Context Influence Species Diversity in Organic Vs. Conventional Agricultural Fields?

    NASA Astrophysics Data System (ADS)

    Seufert, V.; Wood, S.; Reid, A.; Gonzalez, A.; Rhemtulla, J.; Ramankutty, N.

    2014-12-01

    The most important current driver of biodiversity loss is the conversion of natural habitats for human land uses, mostly for the purpose of food production. However, by causing this biodiversity loss, food production is eroding the very same ecosystem services (e.g. pollination and soil fertility) that it depends on. We therefore need to adopt more wildlife-friendly agricultural practices that can contribute to preserving biodiversity. Organic farming has been shown to typically host higher biodiversity than conventional farming. But how is the biodiversity benefit of organic management dependent on the landscape context farms are situated in? To implement organic farming as an effective means for protecting biodiversity and enhancing ecosystem services we need to understand better under what conditions organic management is most beneficial for species. We conducted a meta-analysis of the literature to answer this question, compiling the most comprehensive database to date of studies that monitored biodiversity in organic vs. conventional fields. We also collected information about the landscape surrounding these fields from remote sensing products. Our database consists of 348 study sites across North America and Europe. Our analysis shows that organic management can improve biodiversity in agricultural fields substantially. It is especially effective at preserving biodiversity in homogeneous landscapes that are structurally simplified and dominated by either cropland or pasture. In heterogeneous landscapes conventional agriculture might instead already hold high biodiversity, and organic management does not appear to provide as much of a benefit for species richness as in simplified landscapes. Our results suggest that strategies to maintain biodiversity-dependent ecosystem services should include a combination of pristine natural habitats, wildlife-friendly farming systems like organic farming, and high-yielding conventional systems, interspersed in structurally

  10. Importance of energy balance in agriculture.

    NASA Astrophysics Data System (ADS)

    Meco, R.; Moreno, M. M.; Lacasta, C.; Tarquis, A. M.; Moreno, C.

    2012-04-01

    Since the beginning, man has tried to control nature and the environment, and the use of energy, mainly from non-renewable sources providing the necessary power for that. The consequences of this long fight against nature has reached a critical state of unprecedented worldwide environmental degradation, as evidenced by the increasing erosion of fertile lands, the deforestation processes, the pollution of water, air and land by agrochemicals, the loss of plant and animal species, the progressive deterioration of the ozone layer and signs of global warming. This is exacerbated by the increasing population growth, implying a steady increase in consumption, and consequently, in the use of energy. Unfortunately, all these claims are resulting in serious economic and environmental problems worldwide. Because the economic and environmental future of the countries is interrelated, it becomes necessary to adopt sustainable development models based on the use of renewable and clean energies, the search for alternative resources and the use of productive systems more efficient from an energy standpoint, always with a reduction of greenhouse gas emissions. In relation to the agricultural sector, the question we ask is: how long can we keep the current energy-intensive agricultural techniques in developed countries? To analyze this aspect, energy balance is a very helpful tool because can lead to more efficient, sustainable and environment-friendly production systems for each agro-climatic region. This requires the identification of all the inputs and the outputs involved and their conversion to energy values by means of corresponding energy coefficients or equivalents (International Federation of Institutes for Advanced Studies). Energy inputs (EI) can be divided in direct (energy directly used in farms as fuel, machines, fertilizers, seeds, herbicides, human labor, etc.) and indirect (energy not consumed in the farm but in the elaboration, manufacturing or manipulation of

  11. The importance of comprehensive agricultural education in land-grant institutions: a historical perspective.

    PubMed

    Grant, P M; Field, T G; Green, R D; Rollin, B E

    2000-06-01

    Any thorough examination of the present and future of agricultural education must certainly begin with a look into its past. Since the creation of the United States, many leading American philosophers have viewed a strong agrarian culture as the bedrock of American vigor. These same philosophers repeatedly noted the significance of comprehensive agricultural education to a nation rich in agricultural wealth. The signing of the Agricultural Colleges Act legitimized the concept of formal education in the agricultural sciences and provided funding for such education. The Act, which came to be known as the Morrill Act, after one of its primary authors, stressed the importance of comprehensive education. In fact, the inclusion of liberal studies was specifically mentioned in the Morrill Act and was defended repeatedly by Morrill himself. Comprehensive education prevented graduating technically trained students who were lacking in the basic outcomes of education--critical, comprehensive problem solving, cohesive thought, and effective communication. However, throughout history, the demands of a growing population coupled with rapid advancements in scientific knowledge led to a gradual move away from comprehensive education in agricultural sciences toward increasing specialization, resulting in more narrowly trained students. Today's agricultural students are technically well versed but often lack the skill and knowledge required for cohesive thought and critical problem solving. Addressing the multitude of challenges facing leaders in the future of agriculture requires much more than technical skill. These challenges require quick, yet careful thinkers and communicators who can respond to changing market structure and consumer demand in a dynamic way. Students who are a product of a conscious move toward amalgamation of burgeoning scientific knowledge and technical prowess with an integrative education emphasizing relationships between disciplines would better serve

  12. DNA barcoding commercially important fish species of Turkey.

    PubMed

    Keskın, Emre; Atar, Hasan H

    2013-09-01

    DNA barcoding was used in the identification of 89 commercially important freshwater and marine fish species found in Turkish ichthyofauna. A total of 1765 DNA barcodes using a 654-bp-long fragment of the mitochondrial cytochrome c oxidase subunit I gene were generated for 89 commercially important freshwater and marine fish species found in Turkish ichthyofauna. These species belong to 70 genera, 40 families and 19 orders from class Actinopterygii, and all were associated with a distinct DNA barcode. Nine and 12 of the COI barcode clusters represent the first species records submitted to the BOLD and GenBank databases, respectively. All COI barcodes (except sequences of first species records) were matched with reference sequences of expected species, according to morphological identification. Average nucleotide frequencies of the data set were calculated as T = 29.7%, C = 28.2%, A = 23.6% and G = 18.6%. Average pairwise genetic distance among individuals were estimated as 0.32%, 9.62%, 17,90% and 22.40% for conspecific, congeneric, confamilial and within order, respectively. Kimura 2-parameter genetic distance values were found to increase with taxonomic level. For most of the species analysed in our data set, there is a barcoding gap, and an overlap in the barcoding gap exists for only two genera. Neighbour-joining trees were drawn based on DNA barcodes and all the specimens clustered in agreement with their taxonomic classification at species level. Results of this study supported DNA barcoding as an efficient molecular tool for a better monitoring, conservation and management of fisheries. © 2013 John Wiley & Sons Ltd.

  13. Development of CRISPR/Cas9 mediated virus resistance in agriculturally important crops.

    PubMed

    Khatodia, Surender; Bhatotia, Kirti; Tuteja, Narendra

    2017-05-04

    Clustered regulatory interspaced short palindromic repeats (CRISPR)/CRISPR associated nuclease 9 (Cas9) system of targeted genome editing has already revolutionized the plant science research. This is a RNA guided programmable endonuclease based system composed of 2 components, the Cas9 nuclease and an engineered guide RNA targeting any DNA sequence of the form N20-NGG for novel genome editing applications. The CRISPR/Cas9 technology of targeted genome editing has been recently applied for imparting virus resistance in plants. The robustness, wide adaptability, and easy engineering of this system has proved its potential as an antiviral tool for plants. Novel DNA free genome editing by using the preassembled Cas9/gRNA ribonucleoprotein complex for development of virus resistance in any plant species have been prospected for the future. Also, in this review we have discussed the reports of CRISPR/Cas9 mediated virus resistance strategy against geminiviruses by targeting the viral genome and transgene free strategy against RNA viruses by targeting the host plant factors. In conclusion, CRISPR/Cas9 technology will provide a more durable and broad spectrum viral resistance in agriculturally important crops which will eventually lead to public acceptance and commercialization in the near future.

  14. The Role of Different Agricultural Plant Species in Air Pollution

    NASA Astrophysics Data System (ADS)

    Fiala, P.; Miller, D.; Shivers, S.; Pusede, S.; Roberts, D. A.

    2017-12-01

    The goal of this research project is to use remote sensing data to study the relationship between different plant species and the pollutants in the air. It is known that chemical reactions within plants serve as both sources and sinks for different types of Volatile Organic Compounds. However, the species-specific relationships have not been well studied. Through the better characterization of this relationship, certain aspects of air pollution may be more effectively managed. For this project, I used Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data and trace gas measurements from instruments on board the NASA DC-8 to assess the relationship between different plant species and the pollutants in the air. I used measurements primarily from the agricultural land surrounding Bakersfield, CA. I created a map of the crop species in this area using Multiple Endmember Spectral Mixture Analysis (MESMA) on the AVIRIS imagery, and matched this to trace gas measurements taken on the DC-8. I used a Hysplit matrix trajectory to account for the air transport over the vegetation and up to contact with the plane. Finally, I identified correlations between the plant types and the concentration of the pollutants. The results showed that there were significant relationships between specific species and pollutants, with lemons and grapes contributing to enhanced pollution, and tree nuts reducing pollution. Specifically, almonds produced significantly lower levels of O3 , NO, and NO2. Lemons and grapes had high O3 levels, and lemons had high levels of isoprene. In total, these data show that it may be possible to mitigate airborne pollution via selective planting; however, the overall environmental effects are much more complicated and must be analyzed further.

  15. Proceedings, 18th U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2007

    Treesearch

    Kurt W., ed. Gottschalk

    2008-01-01

    Contains 60 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species.

  16. Proceedings, 16th U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2005

    Treesearch

    Kurt W. Gottschalk

    2005-01-01

    Contains 61 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U. S. Department of Agriculture Interagency Research Forum on Gypsy Moth and Other Invasive Species.

  17. A spatially-explicit data driven approach to assess the effect of agricultural land occupation on species groups

    NASA Astrophysics Data System (ADS)

    Elshout, P.; van Zelm, R.; Karuppiah, R.; Laurenzi, I.; Huijbregts, M.

    2013-12-01

    Change of vegetation cover and increased land use intensity can directly affect the natural habitat and the wildlife it houses. The actual impact of agricultural land use is region specific as crops are grown under various climatic conditions and ways of cultivation and refining. Furthermore, growing a specific crop in a tropical region may require clearance of rainforest while the same crop may replace natural grasslands in temperate regions. Within life cycle impact assessment (LCIA), methods to address impacts of land use on a global scale are still in need of development. We aim to extend existing methods to improve the robustness of LCIA by allowing spatial differentiation of agricultural land use impacts. The goal of this study is to develop characterization factors for the direct impact of land use on biodiversity, which results from the replacement of natural habitat with farmland. The characterization factor expresses the change in species richness under crop cultivation compared to the species richness in the natural situation over a certain area. A second goal was to identify the differences in impacts caused by cultivation of different crop types, sensitivity of different taxonomic groups, and differences in natural land cover. Empirical data on species richness were collected from literature for both natural reference situations and agricultural land use situations. Reference situations were selected on an ecoregion or biome basis. We calculated characterization factors for four crop groups (oil palm, low crops, cereals, and perennial grasses), four species groups (arthropods, birds, mammals, vascular plants), and six biomes.

  18. Importance of wetland landscape structure to shorebirds wintering in an agricultural valley

    USGS Publications Warehouse

    Taft, Oriane W.; Haig, Susan M.

    2006-01-01

    Only recently has the influence of landscape structure on habitat use been a research focus in wetland systems. During non-breeding periods when food can be locally limited, wetland spatial pattern across a landscape may be of great importance in determining wetland use. We studied the influence of landscape structure on abundances of wintering Dunlin (Calidris alpina) and Killdeer (Charadrius vociferus) observed on wetlands in the agricultural Willamette Valley of Oregon, USA, during two winters (1999a??2000, 2000a??2001) of differing rainfall. We examined (1) shorebird use within a sample of 100 km2 regions differing in landscape structure (hectares of shorebird habitat [wet, unvegetated]) and (2) use of sites differing in landscape context (area of shorebird habitat within a species-defined radius). For use of sites, we also assessed the influence of two local characteristics: percent of soil exposed and area of wet habitat. We analyzed data using linear regression and information-theoretic modeling. During the dry winter (2000a??2001), Dunlin were attracted to regions with more wetland habitat and their abundances at sites increased with greater area of shorebird habitat within both the site and the surrounding landscape. In contrast, Dunlin abundances at sites were related to availability of habitat at only a local scale during the wet winter (1999a??2000). Regional habitat availability was of little importance in predicting Killdeer distributions, and Killdeer site use appeared unrelated to habitat distributions at both landscape and local scales. Results suggest prioritizing sites for conservation that are located in areas with high wetland coverage.

  19. Agricultural chemicals: life changer for mosquito vectors in agricultural landscapes?

    PubMed

    Kibuthu, Tabitha W; Njenga, Sammy M; Mbugua, Amos K; Muturi, Ephantus J

    2016-09-13

    Although many mosquito species develop within agricultural landscapes where they are potentially exposed to agricultural chemicals (fertilizers and pesticides), the effects of these chemicals on mosquito biology remain poorly understood. This study investigated the effects of sublethal concentrations of four agricultural chemicals on the life history traits of Anopheles arabiensis and Culex quinquefasciatus mosquitoes. Field and laboratory experiments were conducted to examine how sublethal concentrations of four agricultural chemicals: an insecticide (cypermethrin), a herbicide (glyphosate), and two nitrogenous fertilizers (ammonium sulfate and diammonium phosphate) alter oviposition site selection, emergence rates, development time, adult body size, and longevity of An. arabiensis and Cx. quinquefasciatus. Both mosquito species had preference to oviposit in fertilizer treatments relative to pesticide treatments. Emergence rates for An. arabiensis were significantly higher in the control and ammonium sulfate treatments compared to cypermethrin treatment, while emergence rates for Cx. quinquefasciatus were significantly higher in the diammonium phosphate treatment compared to glyphosate and cypermethrin treatments. For both mosquito species, individuals from the ammonium sulfate and diammonium phosphate treatments took significantly longer time to develop compared to those from cypermethrin and glyphosate treatments. Although not always significant, males and females of both mosquito species tended to be smaller in the ammonium sulfate and diammonium phosphate treatments compared to cypermethrin and glyphosate treatments. There was no significant effect of the agrochemical treatments on the longevity of either mosquito species. These results demonstrate that the widespread use of agricultural chemicals to enhance crop production can have unexpected effects on the spatial distribution and abundance of mosquito vectors of malaria and lymphatic filariasis.

  20. Proceedings, XV U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2004

    Treesearch

    Kurt W., ed. Gottschalk

    2005-01-01

    Contains 61 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U. S. Department of Agriculture Interagency Research Forum on Gypsy Moth and Other Invasive Species. The online version contains two additional papers that were not available at...

  1. Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed.

    PubMed

    Boykin, Laura M; Bell, Charles D; Evans, Gregory; Small, Ian; De Barro, Paul J

    2013-10-18

    Humans and insect herbivores are competing for the same food crops and have been for thousands of years. Despite considerable advances in crop pest management, losses due to insects remain considerable. The global homogenisation of agriculture has supported the range expansion of numerous insect pests and has been driven in part by human-assisted dispersal supported through rapid global trade and low-cost air passenger transport. One of these pests, is the whitefly, Bemisia tabaci, a cryptic species complex that contains some of the world's most damaging pests of agriculture. The complex shows considerable genetic diversity and strong phylogeographic relationships. One consequence of the considerable impact that members of the B. tabaci complex have on agriculture, is the view that human activity, particularly in relation to agricultural practices, such as use of insecticides, has driven the diversification found within the species complex. This has been particularly so in the case of two members of the complex, Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED), which have become globally distributed invasive species. An alternative hypothesis is that diversification is due to paleogeographic and paleoclimatological changes. The idea that human activity is driving speciation within the B. tabaci complex has never been tested, but the increased interest in fossil whiteflies and the growth in molecular data have enabled us to apply a relaxed molecular clock and so estimate divergence dates for the major lineages within the B. tabaci species complex. The divergence estimates do not support the view that human activity has been a major driver of diversification. Our analysis suggests that the major lineages within the complex arose approximately 60-30 mya and the highly invasive MED and MEAM1 split from the rest of the species complex around 12 mya well before the evolution of Homo sapiens and agriculture. Furthermore, the divergence dates coincide with a period

  2. Entomophagy and space agriculture

    NASA Astrophysics Data System (ADS)

    Katayama, N.; Ishikawa, Y.; Takaoki, M.; Yamashita, M.; Nakayama, S.; Kiguchi, K.; Kok, R.; Wada, H.; Mitsuhashi, J.; Space Agriculture Task Force, J.

    Supplying food for human occupants remains one of the primary issues in engineering space habitation Evidently for long-term occupation on a distant planet it is necessary to start agriculture on site Historically humans have consumed a variety of animals and it is required to fill our nutritional need when they live in space Among many candidate group and species of animal to breed in space agriculture insects are of great interest since they have a number of advantages over mammals and other vertebrates or invertebrates About 70-75 of animal species is insects and they play an important role in materials recycle loop of terrestrial biosphere at their various niche For space agriculture we propose several insect species such as the silkworm Bombyx mori the drugstore beetle Stegobium paniceum and the termite Macrotermes subhyalinus Among many advantages these insects do not compete with human in terms of food resources but convert inedible biomass or waste into an edible food source for human The silkworm has been domesticated since 5 000 years ago in China Silk moth has lost capability of flying after its domestication history This feature is advantageous in control of their breeding Silkworm larvae eat specifically mulberry leaves and metamorphose in their cocoon Silk fiber obtained from cocoon can be used to manufacture textile Farming system of the drugstore beetle has been well established Both the drugstore beetle and the termite are capable to convert cellulose or other inedible biomass

  3. Agriculture Teachers: An Endangered Species?

    ERIC Educational Resources Information Center

    Hemp, Paul E.

    1979-01-01

    Discusses a 1978 survey highlighting some of the factors which may be related to the critical shortage of agriculture teachers in Illinois and the high rate of turnover among these teachers. These factors include the time required on the job, inadequate salaries, and large classes. (JOW)

  4. Proceedings, 17th U.S. Department of Agriculture interagency research forum on gypsy moth and other invasive species 2006

    Treesearch

    Kurt W., ed. Gottschalk

    2007-01-01

    Contains three abstracts and papers from the 2005 Forum and 70 abstracts and papers of oral and poster presentations on gypsy moth and other invasive species biology, molecular biology, ecology, impacts, and management presented at the annual U.S. Department of Agriculture Interagency Research Forum on Gypsy Moth and Other Invasive Species.

  5. Proximal Soil Sensing - A Contribution for Species Habitat Distribution Modelling of Earthworms in Agricultural Soils?

    PubMed

    Schirrmann, Michael; Joschko, Monika; Gebbers, Robin; Kramer, Eckart; Zörner, Mirjam; Barkusky, Dietmar; Timmer, Jens

    2016-01-01

    Earthworms are important for maintaining soil ecosystem functioning and serve as indicators of soil fertility. However, detection of earthworms is time-consuming, which hinders the assessment of earthworm abundances with high sampling density over entire fields. Recent developments of mobile terrestrial sensor platforms for proximal soil sensing (PSS) provided new tools for collecting dense spatial information of soils using various sensing principles. Yet, the potential of PSS for assessing earthworm habitats is largely unexplored. This study investigates whether PSS data contribute to the spatial prediction of earthworm abundances in species distribution models of agricultural soils. Proximal soil sensing data, e.g., soil electrical conductivity (EC), pH, and near infrared absorbance (NIR), were collected in real-time in a field with two management strategies (reduced tillage / conventional tillage) and sandy to loam soils. PSS was related to observations from a long-term (11 years) earthworm observation study conducted at 42 plots. Earthworms were sampled from 0.5 x 0.5 x 0.2 m³ soil blocks and identified to species level. Sensor data were highly correlated with earthworm abundances observed in reduced tillage but less correlated with earthworm abundances observed in conventional tillage. This may indicate that management influences the sensor-earthworm relationship. Generalized additive models and state-space models showed that modelling based on data fusion from EC, pH, and NIR sensors produced better results than modelling without sensor data or data from just a single sensor. Regarding the individual earthworm species, particular sensor combinations were more appropriate than others due to the different habitat requirements of the earthworms. Earthworm species with soil-specific habitat preferences were spatially predicted with higher accuracy by PSS than more ubiquitous species. Our findings suggest that PSS contributes to the spatial modelling of

  6. Looking at the big picture: The importance of landbase interactions among forests, agriculture, and climate mitigation policies

    Treesearch

    Rhonda Mazza; Alig Ralph

    2010-01-01

    Land use change is a key part of global change. Deforestation, urban sprawl, agriculture, and other human influences have substantially altered natural ecosystems and fragmented the global landscape. Slowing down deforestation and afforesting environmentally sensitive agricultural land are important steps for mitigating climate change. Because no policy operates in a...

  7. Virtual water flows and water-footprint of agricultural crop production, import and export: A case study for Israel.

    PubMed

    Shtull-Trauring, E; Bernstein, N

    2018-05-01

    Agriculture is the largest global consumer of freshwater. As the volume of international trade continues to rise, so does the understanding that trade of water-intensive crops from areas with high precipitation, to arid regions can help mitigate water scarcity, highlighting the importance of crop water accounting. Virtual-Water, or Water-Footprint [WF] of agricultural crops, is a powerful indicator for assessing the extent of water use by plants, contamination of water bodies by agricultural practices and trade between countries, which underlies any international trade of crops. Most available studies of virtual-water flows by import/export of agricultural commodities were based on global databases, which are considered to be of limited accuracy. The present study analyzes the WF of crop production, import, and export on a country level, using Israel as a case study, comparing data from two high-resolution local databases and two global datasets. Results for local datasets demonstrate a WF of ~1200Million Cubic Meters [MCM]/year) for total crop production, ~1000MCM/year for import and ~250MCM/year for export. Fruits and vegetables comprise ~80% of Export WF (~200MCM/year), ~50% of crop production and only ~20% of the imports. Economic Water Productivity [EWP] ($/m 3 ) for fruits and vegetables is 1.5 higher compared to other crops. Moreover, the results based on local and global datasets varied significantly, demonstrating the importance of developing high-resolution local datasets based on local crop coefficients. Performing high resolution WF analysis can help in developing agricultural policies that include support for low WF/high EWP and limit high WF/low EWP crop export, where water availability is limited. Copyright © 2017 Elsevier B.V. All rights reserved.

  8. 7 CFR 944.503 - Table Grape Import Regulation 4.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Table Grape Import Regulation 4. 944.503 Section 944...; IMPORT REGULATIONS § 944.503 Table Grape Import Regulation 4. (a)(1) Pursuant to section 8e of the Act... Vinifera species table grapes, except Emperor, Calmeria, Almeria, and Ribier varieties, is prohibited...

  9. 7 CFR 944.503 - Table Grape Import Regulation 4.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Table Grape Import Regulation 4. 944.503 Section 944...; IMPORT REGULATIONS § 944.503 Table Grape Import Regulation 4. (a)(1) Pursuant to section 8e of the Act... Vinifera species table grapes, except Emperor, Calmeria, Almeria, and Ribier varieties, is prohibited...

  10. 7 CFR 944.503 - Table Grape Import Regulation 4.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 8 2010-01-01 2010-01-01 false Table Grape Import Regulation 4. 944.503 Section 944...; IMPORT REGULATIONS § 944.503 Table Grape Import Regulation 4. (a)(1) Pursuant to section 8e of the Act... Vinifera species table grapes, except Emperor, Calmeria, Almeria, and Ribier varieties, is prohibited...

  11. 7 CFR 944.503 - Table Grape Import Regulation 4.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Table Grape Import Regulation 4. 944.503 Section 944...; IMPORT REGULATIONS § 944.503 Table Grape Import Regulation 4. (a)(1) Pursuant to section 8e of the Act... Vinifera species table grapes, except Emperor, Calmeria, Almeria, and Ribier varieties, is prohibited...

  12. 7 CFR 944.503 - Table Grape Import Regulation 4.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Table Grape Import Regulation 4. 944.503 Section 944...; IMPORT REGULATIONS § 944.503 Table Grape Import Regulation 4. (a)(1) Pursuant to section 8e of the Act... Vinifera species table grapes, except Emperor, Calmeria, Almeria, and Ribier varieties, is prohibited...

  13. Species invasion shifts the importance of predator dependence.

    PubMed

    Griffen, Blaine D; Delaney, David G

    2007-12-01

    The strength of interference between foraging individuals can influence per capita consumption rates, with important consequences for predator and prey populations and system stability. Here we demonstrate how the replacement of a previously established invader, the predatory crab Carcinus maenas, by the recently invading predatory crab Hemigrapsus sanguineus shifts predation from a species that experiences strong predator interference (strong predator dependence) to one that experiences weak predator interference (weak predator dependence). We demonstrate using field experiments that differences in the strength of predator dependence persist for these species both when they forage on a single focal prey species only (the mussel Mytilus edulis) and when they forage more broadly across the entire prey community. This shift in predator dependence with species replacement may be altering the biomass across trophic levels, consistent with theoretical predictions, as we show that H. sanguineus populations are much larger than C. maenas populations throughout their invaded ranges. Our study highlights that predator dependence may differ among predator species and demonstrates that different predatory impacts of two conspicuous invasive predators may be explained at least in part by different strengths of predator dependence.

  14. Multi-Season Regional Analysis of Multi-Species Occupancy: Implications for Bird Conservation in Agricultural Lands in East-Central Argentina

    PubMed Central

    Goijman, Andrea Paula; Conroy, Michael. J.; Bernardos, Jaime Nicolás; Zaccagnini, María Elena

    2015-01-01

    Rapid expansion and intensification of agriculture create challenges for the conservation of biodiversity and associated ecosystem services. In Argentina, the total row crop planted area has increased in recent decades with the expansion of soybean cultivation, homogenizing the landscape. In 2003 we started the first long-term, large-scale bird monitoring program in agroecosystems of central Argentina, in portions of the Pampas and Espinal ecoregions. Using data from this program, we evaluated the effect of land use and cover extent on birds between 2003-2012, accounting for imperfect detection probabilities using a Bayesian hierarchical, multi-species and multi-season occupancy model. We tested predictions that species diversity is positively related to habitat heterogeneity, which in intensified agroecosystems is thought to be mediated by food availability; thus the extent of land use and cover is predicted to affect foraging guilds differently. We also infer about ecosystem services provisioning and inform management recommendations for conservation of birds. Overall our results support the predictions. Although many species within each guild responded differently to land use and native forest cover, we identified generalities for most trophic guilds. For example, granivorous gleaners, ground insectivores and omnivores responded negatively to high proportions of soybean, while insectivore gleaners and aerial foragers seemed more tolerant. Habitat heterogeneity would likely benefit most species in an intensified agroecosystem, and can be achieved with a diversity of crops, pastures, and natural areas within the landscape. Although most studied species are insectivores, potentially beneficial for pest control, some guilds such as ground insectivores are poorly represented, suggesting that agricultural intensification reduces ecological functions, which may be recovered through management. Continuation of the bird monitoring program will allow us to continue to

  15. Species distributions models in wildlife planning: agricultural policy and wildlife management in the great plains

    USGS Publications Warehouse

    Fontaine, Joseph J.; Jorgensen, Christopher; Stuber, Erica F.; Gruber, Lutz F.; Bishop, Andrew A.; Lusk, Jeffrey J.; Zach, Eric S.; Decker, Karie L.

    2017-01-01

    We know economic and social policy has implications for ecosystems at large, but the consequences for a given geographic area or specific wildlife population are more difficult to conceptualize and communicate. Species distribution models, which extrapolate species-habitat relationships across ecological scales, are capable of predicting population changes in distribution and abundance in response to management and policy, and thus, are an ideal means for facilitating proactive management within a larger policy framework. To illustrate the capabilities of species distribution modeling in scenario planning for wildlife populations, we projected an existing distribution model for ring-necked pheasants (Phasianus colchicus) onto a series of alternative future landscape scenarios for Nebraska, USA. Based on our scenarios, we qualitatively and quantitatively estimated the effects of agricultural policy decisions on pheasant populations across Nebraska, in specific management regions, and at wildlife management areas. 

  16. Cymbopogon species; ethnopharmacology, phytochemistry and the pharmacological importance.

    PubMed

    Avoseh, Opeyemi; Oyedeji, Opeoluwa; Rungqu, Pamela; Nkeh-Chungag, Benedicta; Oyedeji, Adebola

    2015-04-23

    Cymbopogon genus is a member of the family of Gramineae which are herbs known worldwide for their high essential oil content. They are widely distributed across all continents where they are used for various purposes. The commercial and medicinal uses of the various species of Cymbopogon are well documented. Ethnopharmacology evidence shows that they possess a wide array of properties that justifies their use for pest control, in cosmetics and as anti-inflammation agents. These plants may also hold promise as potent anti-tumor and chemopreventive drugs. The chemo-types from this genus have been used as biomarkers for their identification and classification. Pharmacological applications of Cymbopogon citratus are well exploited, though studies show that other species may also useful pharmaceutically. Hence this literature review intends to discuss these species and explore their potential economic importance.

  17. Proximal Soil Sensing – A Contribution for Species Habitat Distribution Modelling of Earthworms in Agricultural Soils?

    PubMed Central

    Schirrmann, Michael; Joschko, Monika; Gebbers, Robin; Kramer, Eckart; Zörner, Mirjam; Barkusky, Dietmar; Timmer, Jens

    2016-01-01

    Background Earthworms are important for maintaining soil ecosystem functioning and serve as indicators of soil fertility. However, detection of earthworms is time-consuming, which hinders the assessment of earthworm abundances with high sampling density over entire fields. Recent developments of mobile terrestrial sensor platforms for proximal soil sensing (PSS) provided new tools for collecting dense spatial information of soils using various sensing principles. Yet, the potential of PSS for assessing earthworm habitats is largely unexplored. This study investigates whether PSS data contribute to the spatial prediction of earthworm abundances in species distribution models of agricultural soils. Methodology/Principal Findings Proximal soil sensing data, e.g., soil electrical conductivity (EC), pH, and near infrared absorbance (NIR), were collected in real-time in a field with two management strategies (reduced tillage / conventional tillage) and sandy to loam soils. PSS was related to observations from a long-term (11 years) earthworm observation study conducted at 42 plots. Earthworms were sampled from 0.5 x 0.5 x 0.2 m³ soil blocks and identified to species level. Sensor data were highly correlated with earthworm abundances observed in reduced tillage but less correlated with earthworm abundances observed in conventional tillage. This may indicate that management influences the sensor-earthworm relationship. Generalized additive models and state-space models showed that modelling based on data fusion from EC, pH, and NIR sensors produced better results than modelling without sensor data or data from just a single sensor. Regarding the individual earthworm species, particular sensor combinations were more appropriate than others due to the different habitat requirements of the earthworms. Earthworm species with soil-specific habitat preferences were spatially predicted with higher accuracy by PSS than more ubiquitous species. Conclusions/Significance Our

  18. Distribution maps for Midsouth tree species

    Treesearch

    Roy C. Beltz; Daniel F. Bertelson

    1990-01-01

    The Midsouth is an important timber-producing region, with a wide variety of sites and species. In addition to timber production, increasing demands for non-timber amenities are placed on the region’s forests. These maps indicate the distribution of individual species recorded in surveys of the Midsouth conducted by the U.S. Department of Agriculture, Forest Service....

  19. Forensically important flesh fly species in Thailand: morphology and developmental rate.

    PubMed

    Sukontason, Kom; Bunchu, Nophawan; Chaiwong, Tarinee; Moophayak, Kittikhun; Sukontason, Kabkaew L

    2010-04-01

    Forensically important flesh fly species in Thailand have been investigated for their larval morphology and developmental rate to increase the forensic entomology database in Thailand and nearby countries. Sarcophaga (Liosarcophaga) dux Thomson, Sarcophaga (Liopygia) ruficornis (Fabricius), and Sarcophaga (Boettcherisca) peregrina (Robineau-Desvoidy) are the species of greatest forensic importance. The third instars of these species are similar in morphological appearance, making it difficult or impossible to differentiate between them based on external morphological characteristics. This study compares these important characteristics and reveals that the most distinctive is the posterior spiracle, followed by the number of papillae on the anterior spiracle. For confirmation of these species, the unique characteristics of adult males are also shown for accurate identification. Both the third instar and adult male characteristics are keys to identifying these species. In addition, the developmental rate of S. dux was examined in northern Thailand during 2002-2003 under natural ambient temperature (approximately 24-28 degrees C) and a natural light/dark photoperiod (approximately 12:12 h), indicating relatively rapid larval development in summer (March-June), pre-pupae (stop moving) initiated at 72 h. In the rainy season (July-October), pre-pupae initiated at 72 or 96 h, whereas pre-pupae initiated at 96 h in winter.

  20. Volatile Organic Compound Emissions by Agricultural Crops

    NASA Astrophysics Data System (ADS)

    Ormeno, E.; Farres, S.; Gentner, D.; Park, J.; McKay, M.; Karlik, J.; Goldstein, A.

    2008-12-01

    Biogenic Volatile Organic Compounds (BVOCs) participate in ozone and aerosol formation, and comprise a substantial fraction of reactive VOC emission inventories. In the agriculturally intensive Central Valley of California, emissions from crops may substantially influence regional air quality, but emission potentials have not been extensively studied with advanced instrumentation for many important crops. Because crop emissions may vary according to the species, and California emission inventories are constructed via a bottom-up approach, a better knowledge of the emission rate at the species-specific level is critical for reducing uncertainties in emission inventories and evaluating emission model performance. In the present study we identified and quantified the BVOCs released by dominant agricultural crops in California. A screening study to investigate both volatile and semivolatile BVOC fractions (oxygenated VOCs, isoprene, monoterepenes, sesquiterpenes, etc.) was performed for 25 crop species (at least 3 replicates plants each), including branch enclosures of woody species (e.g. peach, mandarin, grape, pistachio) and whole plant enclosures for herbaceous species (e.g. onion, alfalfa, carrot), through a dynamic cuvette system with detection by PTRMS, in-situ GCMS/FID, and collection on carbon-based adsorbents followed by extraction and GCMS analysis. Emission data obtained in this study will allow inclusion of these crops in BVOC emission inventories and air quality simulations.

  1. Host and habitat index for Phytophthora species in Oregon

    Treesearch

    Everett Hansen; Paul Reeser; Wendy Sutton; Laura Sims

    2013-01-01

    Phytophthora species are known as pathogens of agricultural crops or invasive pathogens destroying forests, and their prominent inclusion in various host-pathogen indices reflects this importance. It is increasingly evident, however, that Phytophthora species are abundant in streams in healthy forests and widespread in forest...

  2. Hunting or habitat? Drivers of waterbird abundance and community structure in agricultural wetlands of southern India.

    PubMed

    Ramachandran, Ramesh; Kumar, Ajith; Gopi Sundar, Kolla S; Bhalla, Ravinder Singh

    2017-09-01

    The relative impacts of hunting and habitat on waterbird community were studied in agricultural wetlands of southern India. We surveyed wetlands to document waterbird community, and interviewed hunters to document hunting intensity, targeted species, and the motivations for hunting. Our results show that hunting leads to drastic declines in waterbird diversity and numbers, and skew the community towards smaller species. Hunting intensity, water spread, and vegetation cover were the three most important determinants of waterbird abundance and community structure. Species richness, density of piscivorous species, and medium-sized species (31-65 cm) were most affected by hunting. Out of 53 species recorded, 47 were hunted, with a preference for larger birds. Although illegal, hunting has increased in recent years and is driven by market demand. This challenges the widely held belief that waterbird hunting in India is a low intensity, subsistence activity, and undermines the importance of agricultural wetlands in waterbird conservation.

  3. MPIC: a mitochondrial protein import components database for plant and non-plant species.

    PubMed

    Murcha, Monika W; Narsai, Reena; Devenish, James; Kubiszewski-Jakubiak, Szymon; Whelan, James

    2015-01-01

    In the 2 billion years since the endosymbiotic event that gave rise to mitochondria, variations in mitochondrial protein import have evolved across different species. With the genomes of an increasing number of plant species sequenced, it is possible to gain novel insights into mitochondrial protein import pathways. We have generated the Mitochondrial Protein Import Components (MPIC) Database (DB; http://www.plantenergy.uwa.edu.au/applications/mpic) providing searchable information on the protein import apparatus of plant and non-plant mitochondria. An in silico analysis was carried out, comparing the mitochondrial protein import apparatus from 24 species representing various lineages from Saccharomyces cerevisiae (yeast) and algae to Homo sapiens (human) and higher plants, including Arabidopsis thaliana (Arabidopsis), Oryza sativa (rice) and other more recently sequenced plant species. Each of these species was extensively searched and manually assembled for analysis in the MPIC DB. The database presents an interactive diagram in a user-friendly manner, allowing users to select their import component of interest. The MPIC DB presents an extensive resource facilitating detailed investigation of the mitochondrial protein import machinery and allowing patterns of conservation and divergence to be recognized that would otherwise have been missed. To demonstrate the usefulness of the MPIC DB, we present a comparative analysis of the mitochondrial protein import machinery in plants and non-plant species, revealing plant-specific features that have evolved. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  4. Recent trends/challenges in irrigated agriculture-Why is irrigation important in a discussion of agricultural migration?

    USDA-ARS?s Scientific Manuscript database

    United States agriculture contributes 16% of the $9 trillion gross domestic product, 8% of U.S. exports, and 17% of employment while providing food to all citizens, despite the fact that only 2% of the U.S. workforces is on farms. Agricultural productivity has grown by 240% since 1948, while agricul...

  5. Agricultural matrices affect ground ant assemblage composition inside forest fragments

    PubMed Central

    Dos Santos, Iracenir Andrade; Ramos, Flavio Nunes; Majer, Jonathan David; Vilela, Evaldo Ferreira

    2018-01-01

    The establishment of agricultural matrices generally involves deforestation, which leads to fragmentation of the remaining forest. This fragmentation can affect forest dynamics both positively and negatively. Since most animal species are affected, certain groups can be used to measure the impact of such fragmentation. This study aimed to measure the impacts of agricultural crops (matrices) on ant communities of adjacent lower montane Atlantic rainforest fragments. We sampled nine forest fragments at locations surrounded by different agricultural matrices, namely: coffee (3 replicates); sugarcane (3); and pasture (3). At each site we installed pitfall traps along a 500 m transect from the interior of the matrix to the interior of the fragment (20 pitfall traps ~25 m apart). Each transect was partitioned into four categories: interior of the matrix; edge of the matrix; edge of the fragment; and interior of the fragment. For each sample site, we measured ant species richness and ant community composition within each transect category. Ant richness and composition differed between fragments and matrices. Each sample location had a specific composition of ants, probably because of the influence of the nature and management of the agricultural matrices. Species composition in the coffee matrix had the highest similarity to its corresponding fragment. The variability in species composition within forest fragments surrounded by pasture was greatest when compared with forest fragments surrounded by sugarcane or, to a lesser extent, coffee. Functional guild composition differed between locations, but the most representative guild was ‘generalist’ both in the agricultural matrices and forest fragments. Our results are important for understanding how agricultural matrices act on ant communities, and also, how these isolated forest fragments could act as an island of biodiversity in an ‘ocean of crops’. PMID:29791493

  6. Agricultural matrices affect ground ant assemblage composition inside forest fragments.

    PubMed

    Assis, Diego Santana; Dos Santos, Iracenir Andrade; Ramos, Flavio Nunes; Barrios-Rojas, Katty Elena; Majer, Jonathan David; Vilela, Evaldo Ferreira

    2018-01-01

    The establishment of agricultural matrices generally involves deforestation, which leads to fragmentation of the remaining forest. This fragmentation can affect forest dynamics both positively and negatively. Since most animal species are affected, certain groups can be used to measure the impact of such fragmentation. This study aimed to measure the impacts of agricultural crops (matrices) on ant communities of adjacent lower montane Atlantic rainforest fragments. We sampled nine forest fragments at locations surrounded by different agricultural matrices, namely: coffee (3 replicates); sugarcane (3); and pasture (3). At each site we installed pitfall traps along a 500 m transect from the interior of the matrix to the interior of the fragment (20 pitfall traps ~25 m apart). Each transect was partitioned into four categories: interior of the matrix; edge of the matrix; edge of the fragment; and interior of the fragment. For each sample site, we measured ant species richness and ant community composition within each transect category. Ant richness and composition differed between fragments and matrices. Each sample location had a specific composition of ants, probably because of the influence of the nature and management of the agricultural matrices. Species composition in the coffee matrix had the highest similarity to its corresponding fragment. The variability in species composition within forest fragments surrounded by pasture was greatest when compared with forest fragments surrounded by sugarcane or, to a lesser extent, coffee. Functional guild composition differed between locations, but the most representative guild was 'generalist' both in the agricultural matrices and forest fragments. Our results are important for understanding how agricultural matrices act on ant communities, and also, how these isolated forest fragments could act as an island of biodiversity in an 'ocean of crops'.

  7. DNA barcodes for bio-surveillance: regulated and economically important arthropod plant pests.

    PubMed

    Ashfaq, Muhammad; Hebert, Paul D N

    2016-11-01

    Many of the arthropod species that are important pests of agriculture and forestry are impossible to discriminate morphologically throughout all of their life stages. Some cannot be differentiated at any life stage. Over the past decade, DNA barcoding has gained increasing adoption as a tool to both identify known species and to reveal cryptic taxa. Although there has not been a focused effort to develop a barcode library for them, reference sequences are now available for 77% of the 409 species of arthropods documented on major pest databases. Aside from developing the reference library needed to guide specimen identifications, past barcode studies have revealed that a significant fraction of arthropod pests are a complex of allied taxa. Because of their importance as pests and disease vectors impacting global agriculture and forestry, DNA barcode results on these arthropods have significant implications for quarantine detection, regulation, and management. The current review discusses these implications in light of the presence of cryptic species in plant pests exposed by DNA barcoding.

  8. Comparative genomics of Clavibacter michiganensis subspecies, pathogens of important agricultural crops.

    PubMed

    Tambong, James T

    2017-01-01

    Subspecies of Clavibacter michiganensis are important phytobacterial pathogens causing devastating diseases in several agricultural crops. The genome organizations of these pathogens are poorly understood. Here, the complete genomes of 5 subspecies (C. michiganensis subsp. michiganensis, Cmi; C. michiganensis subsp. sepedonicus, Cms; C. michiganensis subsp. nebraskensis, Cmn; C. michiganensis subsp. insidiosus, Cmi and C. michiganensis subsp. capsici, Cmc) were analyzed. This study assessed the taxonomic position of the subspecies based on 16S rRNA and genome-based DNA homology and concludes that there is ample evidence to elevate some of the subspecies to species-level. Comparative genomics analysis indicated distinct genomic features evident on the DNA structural atlases and annotation features. Based on orthologous gene analysis, about 2300 CDSs are shared across all the subspecies; and Cms showed the highest number of subspecies-specific CDS, most of which are mobile elements suggesting that Cms could be more prone to translocation of foreign genes. Cms and Cmi had the highest number of pseudogenes, an indication of potential degenerating genomes. The stress response factors that may be involved in cold/heat shock, detoxification, oxidative stress, osmoregulation, and carbon utilization are outlined. For example, the wco-cluster encoding for extracellular polysaccharide II is highly conserved while the sucrose-6-phosphate hydrolase that catalyzes the hydrolysis of sucrose-6-phosphate yielding glucose-6-phosphate and fructose is highly divergent. A unique second form of the enzyme is only present in Cmn NCPPB 2581. Also, twenty-eight plasmid-borne CDSs in the other subspecies were found to have homologues in the chromosomal genome of Cmn which is known not to carry plasmids. These CDSs include pathogenesis-related factors such as Endocellulases E1 and Beta-glucosidase. The results presented here provide an insight of the functional organization of the genomes of

  9. Comparative genomics of Clavibacter michiganensis subspecies, pathogens of important agricultural crops

    PubMed Central

    2017-01-01

    Subspecies of Clavibacter michiganensis are important phytobacterial pathogens causing devastating diseases in several agricultural crops. The genome organizations of these pathogens are poorly understood. Here, the complete genomes of 5 subspecies (C. michiganensis subsp. michiganensis, Cmi; C. michiganensis subsp. sepedonicus, Cms; C. michiganensis subsp. nebraskensis, Cmn; C. michiganensis subsp. insidiosus, Cmi and C. michiganensis subsp. capsici, Cmc) were analyzed. This study assessed the taxonomic position of the subspecies based on 16S rRNA and genome-based DNA homology and concludes that there is ample evidence to elevate some of the subspecies to species-level. Comparative genomics analysis indicated distinct genomic features evident on the DNA structural atlases and annotation features. Based on orthologous gene analysis, about 2300 CDSs are shared across all the subspecies; and Cms showed the highest number of subspecies-specific CDS, most of which are mobile elements suggesting that Cms could be more prone to translocation of foreign genes. Cms and Cmi had the highest number of pseudogenes, an indication of potential degenerating genomes. The stress response factors that may be involved in cold/heat shock, detoxification, oxidative stress, osmoregulation, and carbon utilization are outlined. For example, the wco-cluster encoding for extracellular polysaccharide II is highly conserved while the sucrose-6-phosphate hydrolase that catalyzes the hydrolysis of sucrose-6-phosphate yielding glucose-6-phosphate and fructose is highly divergent. A unique second form of the enzyme is only present in Cmn NCPPB 2581. Also, twenty-eight plasmid-borne CDSs in the other subspecies were found to have homologues in the chromosomal genome of Cmn which is known not to carry plasmids. These CDSs include pathogenesis-related factors such as Endocellulases E1 and Beta-glucosidase. The results presented here provide an insight of the functional organization of the genomes of

  10. Mycorrhizal fungal establishment in agricultural soils: factors determining inoculation success.

    PubMed

    Verbruggen, Erik; van der Heijden, Marcel G A; Rillig, Matthias C; Kiers, E Toby

    2013-03-01

    Soil biota provide a number of key ecological services to natural and agricultural ecosystems. Increasingly, inoculation of soils with beneficial soil biota is being considered as a tool to enhance plant productivity and sustainability of agricultural ecosystems. However, one important bottleneck is the establishment of viable microbial populations that can persist over multiple seasons. Here, we explore the factors responsible for establishment of the beneficial soil fungi, arbuscular mycorrhizal fungi (AMF), which can enhance the yield of a wide range of agricultural crops. We evaluate field application potential and discuss ecological and evolutionary factors responsible for application success. We identify three factors that determine inoculation success and AM fungal persistence in soils: species compatibility (can the introduced species thrive under the imposed circumstances?); field carrying capacity (the habitat niche available to AMF); and priority effects (the influence of timing and competition on the establishment of alternative stable communities). We explore how these factors can be employed for establishment and persistence of AMF. We address the importance of inoculum choice, plant choice, management practices and timing of inoculation for the successful manipulation of the resulting AMF community.

  11. BOREAL FOREST CARBON STOCKS AND WOOD SUPPLY: PAST, PRESENT AND FUTURE RESPONSES TO CHANGING CLIMATE, AGRICULTURE AND SPECIES AVAILABILITY

    EPA Science Inventory

    The paper assesses the role in boreal forest growth played by environment. It examines past changes in climate coupled with glaciation, and future changes in climate coupled with agricultural land use and tree species availability. The objective was to define and evaluate potenti...

  12. 7 CFR 322.2 - General requirements for interstate movement and importation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND... areas is prohibited. (b) Importation. In order to prevent the introduction into the United States of bee diseases and parasites, and undesirable species and subspecies of honeybees: (1) You may import bees...

  13. 7 CFR 322.2 - General requirements for interstate movement and importation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND... areas is prohibited. (b) Importation. In order to prevent the introduction into the United States of bee diseases and parasites, and undesirable species and subspecies of honeybees: (1) You may import bees...

  14. 7 CFR 322.2 - General requirements for interstate movement and importation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND... areas is prohibited. (b) Importation. In order to prevent the introduction into the United States of bee diseases and parasites, and undesirable species and subspecies of honeybees: (1) You may import bees...

  15. 7 CFR 322.2 - General requirements for interstate movement and importation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND... areas is prohibited. (b) Importation. In order to prevent the introduction into the United States of bee diseases and parasites, and undesirable species and subspecies of honeybees: (1) You may import bees...

  16. 7 CFR 322.2 - General requirements for interstate movement and importation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND... areas is prohibited. (b) Importation. In order to prevent the introduction into the United States of bee diseases and parasites, and undesirable species and subspecies of honeybees: (1) You may import bees...

  17. Species mobility and landscape context determine the importance of local and landscape-level attributes.

    PubMed

    Fuentes-Montemayor, Elisa; Watts, Kevin; Macgregor, Nicholas A; Lopez-Gallego, Zeltia; J Park, Kirsty

    2017-07-01

    Conservation strategies to tackle habitat loss and fragmentation require actions at the local (e.g., improving/expanding existing habitat patches) and landscape level (e.g., creating new habitat in the matrix). However, the relative importance of these actions for biodiversity is still poorly understood, leading to debate on how to prioritize conservation activities. Here, we assess the relative importance of local vs. landscape-level attributes in determining the use of woodlands by bats in fragmented landscapes; we also compare the role of habitat amount in the surrounding landscape per se vs. a combination of both habitat amount and configuration and explore whether the relative importance of these attributes varies with species mobility and landscape context. We conducted acoustic surveys in 102 woodland patches in the UK that form part of the WrEN project (www.wren-project.com), a large-scale natural experiment designed to study the effects of 160 yr of woodland creation on biodiversity and inform landscape-scale conservation. We used multivariate analysis and a model-selection approach to assess the relative importance of local (e.g., vegetation structure) and landscape-level (e.g., amount/configuration of surrounding land types) attributes on bat occurrence and activity levels. Species mobility was an important trait determining the relative importance of local vs. landscape-level attributes for different bat species. Lower mobility species were most strongly influenced by local habitat quality; the landscape became increasingly important for higher mobility species. At the landscape-scale, a combination of habitat amount and configuration appeared more important than habitat amount alone for lower mobility species, while the opposite was observed for higher mobility species. Regardless of species mobility, landscape-level attributes appeared more important for bats in a more homogeneous and intensively farmed landscape. Conservation strategies involving

  18. The roles and values of wild foods in agricultural systems

    PubMed Central

    Bharucha, Zareen; Pretty, Jules

    2010-01-01

    Almost every ecosystem has been amended so that plants and animals can be used as food, fibre, fodder, medicines, traps and weapons. Historically, wild plants and animals were sole dietary components for hunter–gatherer and forager cultures. Today, they remain key to many agricultural communities. The mean use of wild foods by agricultural and forager communities in 22 countries of Asia and Africa (36 studies) is 90–100 species per location. Aggregate country estimates can reach 300–800 species (e.g. India, Ethiopia, Kenya). The mean use of wild species is 120 per community for indigenous communities in both industrialized and developing countries. Many of these wild foods are actively managed, suggesting there is a false dichotomy around ideas of the agricultural and the wild: hunter–gatherers and foragers farm and manage their environments, and cultivators use many wild plants and animals. Yet, provision of and access to these sources of food may be declining as natural habitats come under increasing pressure from development, conservation-exclusions and agricultural expansion. Despite their value, wild foods are excluded from official statistics on economic values of natural resources. It is clear that wild plants and animals continue to form a significant proportion of the global food basket, and while a variety of social and ecological drivers are acting to reduce wild food use, their importance may be set to grow as pressures on agricultural productivity increase. PMID:20713393

  19. Temporal dynamics influenced by global change: bee community phenology in urban, agricultural, and natural landscapes.

    PubMed

    Leong, Misha; Ponisio, Lauren C; Kremen, Claire; Thorp, Robbin W; Roderick, George K

    2016-03-01

    Urbanization and agricultural intensification of landscapes are important drivers of global change, which in turn have direct impacts on local ecological communities leading to shifts in species distributions and interactions. Here, we illustrate how human-altered landscapes, with novel ornamental and crop plant communities, result not only in changes to local community diversity of floral-dependent species, but also in shifts in seasonal abundance of bee pollinators. Three years of data on the spatio-temporal distributions of 91 bee species show that seasonal patterns of abundance and species richness in human-altered landscapes varied significantly less compared to natural habitats in which floral resources are relatively scarce in the dry summer months. These findings demonstrate that anthropogenic environmental changes in urban and agricultural systems, here mediated through changes in plant resources and water inputs, can alter the temporal dynamics of pollinators that depend on them. Changes in phenology of interactions can be an important, though frequently overlooked, mechanism of global change. © 2015 John Wiley & Sons Ltd.

  20. Multi-Scale Associations between Vegetation Cover and Woodland Bird Communities across a Large Agricultural Region

    PubMed Central

    Ikin, Karen; Barton, Philip S.; Stirnemann, Ingrid A.; Stein, John R.; Michael, Damian; Crane, Mason; Okada, Sachiko; Lindenmayer, David B.

    2014-01-01

    Improving biodiversity conservation in fragmented agricultural landscapes has become an important global issue. Vegetation at the patch and landscape-scale is important for species occupancy and diversity, yet few previous studies have explored multi-scale associations between vegetation and community assemblages. Here, we investigated how patch and landscape-scale vegetation cover structure woodland bird communities. We asked: (1) How is the bird community associated with the vegetation structure of woodland patches and the amount of vegetation cover in the surrounding landscape? (2) Do species of conservation concern respond to woodland vegetation structure and surrounding vegetation cover differently to other species in the community? And (3) Can the relationships between the bird community and the woodland vegetation structure and surrounding vegetation cover be explained by the ecological traits of the species comprising the bird community? We studied 103 woodland patches (0.5 - 53.8 ha) over two time periods across a large (6,800 km2) agricultural region in southeastern Australia. We found that both patch vegetation and surrounding woody vegetation cover were important for structuring the bird community, and that these relationships were consistent over time. In particular, the occurrence of mistletoe within the patches and high values of woody vegetation cover within 1,000 ha and 10,000 ha were important, especially for bird species of conservation concern. We found that the majority of these species displayed similar, positive responses to patch and landscape vegetation attributes. We also found that these relationships were related to the foraging and nesting traits of the bird community. Our findings suggest that management strategies to increase both remnant vegetation quality and the cover of surrounding woody vegetation in fragmented agricultural landscapes may lead to improved conservation of bird communities. PMID:24830684

  1. Multi-scale associations between vegetation cover and woodland bird communities across a large agricultural region.

    PubMed

    Ikin, Karen; Barton, Philip S; Stirnemann, Ingrid A; Stein, John R; Michael, Damian; Crane, Mason; Okada, Sachiko; Lindenmayer, David B

    2014-01-01

    Improving biodiversity conservation in fragmented agricultural landscapes has become an important global issue. Vegetation at the patch and landscape-scale is important for species occupancy and diversity, yet few previous studies have explored multi-scale associations between vegetation and community assemblages. Here, we investigated how patch and landscape-scale vegetation cover structure woodland bird communities. We asked: (1) How is the bird community associated with the vegetation structure of woodland patches and the amount of vegetation cover in the surrounding landscape? (2) Do species of conservation concern respond to woodland vegetation structure and surrounding vegetation cover differently to other species in the community? And (3) Can the relationships between the bird community and the woodland vegetation structure and surrounding vegetation cover be explained by the ecological traits of the species comprising the bird community? We studied 103 woodland patches (0.5 - 53.8 ha) over two time periods across a large (6,800 km(2)) agricultural region in southeastern Australia. We found that both patch vegetation and surrounding woody vegetation cover were important for structuring the bird community, and that these relationships were consistent over time. In particular, the occurrence of mistletoe within the patches and high values of woody vegetation cover within 1,000 ha and 10,000 ha were important, especially for bird species of conservation concern. We found that the majority of these species displayed similar, positive responses to patch and landscape vegetation attributes. We also found that these relationships were related to the foraging and nesting traits of the bird community. Our findings suggest that management strategies to increase both remnant vegetation quality and the cover of surrounding woody vegetation in fragmented agricultural landscapes may lead to improved conservation of bird communities.

  2. Assessing the Impact of a Semester-Long Course in Agricultural Mechanics on Pre-Service Agricultural Education Teachers' Importance, Confidence, and Knowledge of Welding

    ERIC Educational Resources Information Center

    Leiby, Brian L.; Robinson, J. Shane; Key, James P.

    2013-01-01

    This study sought to assess the perceptions of Oklahoma pre-service agricultural education teachers regarding the importance of identified welding skills standards and their confidence to teach them, based on a semester-long course on metals and welding. This study also sought to determine pre-service teachers' knowledge of welding prior to and at…

  3. Helminth communities of four commercially important fish species from Chetumal Bay, Mexico.

    PubMed

    Aguirre-Macedo, M L; Vidal-Martínez, V M; González-Solís, D; Caballero, P I

    2007-03-01

    The relative importance of ecology and evolution as factors determining species richness and composition of the helminth communities of fish is a matter of current debate. Theoretical studies use host-parasite lists, but these do not include studies on a temporal or spatial scale. Local environmental conditions and host biological characteristics are shown to influence helminth species richness and composition in four fish species (Eugerres plumieri, Hexanematichthys assimilis, Oligoplites saurus, and Scomberomorus maculatus) in Chetumal Bay, Mexico. With the exception of H. assimilis, the helminth communities had not been previously studied and possible associations between environmental and host biological characteristics as factors determining helminth species richness and composition using redundancy analysis (RDA) are described. Thirty-four helminth species are identified, with the highest number of species (19 total (mean = 6.3 +/- 2.1)) and the lowest (9 (4.0 +/- 1.0)) occurring in H. assimilis and S. maculatus, respectively. The larval nematodes Contracaecum sp. and Pseudoterranova sp. were not only the helminth species shared by all four host species but also were the most prevalent and abundant. Statistical associations between helminth community parameters and local ecological variables such as host habitat use, feeding habits, mobility, and time of residence in coastal lagoons are identified. Phylogeny is important because it clearly separates all four host species by their specialist parasites, although specific habitat and feeding habits also significantly influence the differentiation between the four fish species.

  4. Investigating the influence of geospatial attributes on spider species richness and diversity

    USDA-ARS?s Scientific Manuscript database

    The maintenance of biodiversity is an important aspect of the long-term sustainability of agricultural production. Maintaining biodiversity, especially in regards to predator species, promotes natural pest control and many other ecosystem services. Spiders (Araneae) often prey upon common pest speci...

  5. The influence of mistletoes on birds in an agricultural landscape of central Mexico

    NASA Astrophysics Data System (ADS)

    Zuria, Iriana; Castellanos, Ignacio; Gates, J. Edward

    2014-11-01

    Mistletoes are hemiparasitic flowering plants that function as keystone resources in forests and woodlands of temperate regions, where a positive relationship between mistletoe density and avian species richness has been observed. Mistletoes have been less studied in tropical regions and the relationship between birds and mistletoes has seldom been explored in tropical agricultural systems. Therefore, we studied the presence of infected trees and infection prevalence (i.e., number of parasitized trees/total number of trees) by Psittacanthus (Loranthaceae) mistletoes in 23 hedgerows located in an agricultural landscape of central Mexico during the dry and rainy seasons, and investigated the relationship between bird species richness and abundance and the abundance of mistletoes. We found a mean of 74 mistletoe plants per 100-m transect of only one species, Psittacanthus calyculatus. Thirty-one percent of the trees surveyed were infected and tree species differed in infection prevalence, mesquite (Prosopis laevigata) being the most infected species with 86% of the surveyed trees infected. For both seasons, we found a positive and significant association between bird species richness and number of mistletoe plants. The same pattern was observed for total bird abundance. Many resident and Neotropical migratory birds were observed foraging on mistletoes. Our results show that mistletoes are important in promoting a higher bird species richness and abundance in tropical agricultural landscapes.

  6. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS... ANIMAL, BIRD, AND POULTRY PRODUCTS; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Aquatic...

  7. AgBase: supporting functional modeling in agricultural organisms

    PubMed Central

    McCarthy, Fiona M.; Gresham, Cathy R.; Buza, Teresia J.; Chouvarine, Philippe; Pillai, Lakshmi R.; Kumar, Ranjit; Ozkan, Seval; Wang, Hui; Manda, Prashanti; Arick, Tony; Bridges, Susan M.; Burgess, Shane C.

    2011-01-01

    AgBase (http://www.agbase.msstate.edu/) provides resources to facilitate modeling of functional genomics data and structural and functional annotation of agriculturally important animal, plant, microbe and parasite genomes. The website is redesigned to improve accessibility and ease of use, including improved search capabilities. Expanded capabilities include new dedicated pages for horse, cat, dog, cotton, rice and soybean. We currently provide 590 240 Gene Ontology (GO) annotations to 105 454 gene products in 64 different species, including GO annotations linked to transcripts represented on agricultural microarrays. For many of these arrays, this provides the only functional annotation available. GO annotations are available for download and we provide comprehensive, species-specific GO annotation files for 18 different organisms. The tools available at AgBase have been expanded and several existing tools improved based upon user feedback. One of seven new tools available at AgBase, GOModeler, supports hypothesis testing from functional genomics data. We host several associated databases and provide genome browsers for three agricultural pathogens. Moreover, we provide comprehensive training resources (including worked examples and tutorials) via links to Educational Resources at the AgBase website. PMID:21075795

  8. Mycorrhizae and their potential use in the agricultural and forestry industries.

    PubMed

    Peterson, R L; Piché, Y; Plenchette, C

    1984-01-01

    Mycorrhizal fungi associated with plant roots increase the absorption of nutrients, particularly phosphorus, and thus enhance the growth of crop plants and trees. Vesicular-arbuscular mycorrhizae (VAM) occur in approximately 90% of all vascular plants including most of the important agricultural species, whereas ectomycorrhizae are found in most of the economically important tree species of the temperate regions of the world, and in some tropical trees. These symbiotic associations are, therefore, important in crop and biomass production. For this reason they are receiving considerable attention in agriculture and forestry. Currently, VAM are utilized in fumigated soils, greenhouse crops, and in the reclamation of disturbed sites. Ectomycorrhizae are employed in the establishment of trees in nurseries, in reforestation programs, and in the production of containerized seedlings. Production of VAM and ectomycorrhiza inoculum for large scale projects is now feasible but many basic questions related to persistence of these fungi in field situations, competition with other microorganisms, and particularly the most efficient fungi to use for particular hosts remain largely unanswered.

  9. Selected examples of dispersal of arthropods associated with agricultural crop and animal production

    NASA Technical Reports Server (NTRS)

    Henneberry, T. J.

    1979-01-01

    The economic importance of arthropods in agricultural production systems and the possibilities of using dispersal behavior to develop and manipulate control are examined. Examples of long and short distance dispersal of economic insect pests and beneficial species from cool season host reservoirs and overwintering sites are presented. Significant dispersal of these species often occurring during crop and animal production is discussed.

  10. Global Establishment Risk of Economically Important Fruit Fly Species (Tephritidae)

    PubMed Central

    Qin, Yujia; Paini, Dean R.; Wang, Cong; Fang, Yan; Li, Zhihong

    2015-01-01

    The global invasion of Tephritidae (fruit flies) attracts a great deal of attention in the field of plant quarantine and invasion biology because of their economic importance. Predicting which one in hundreds of potential invasive fruit fly species is most likely to establish in a region presents a significant challenge, but can be facilitated using a self organising map (SOM), which is able to analyse species associations to rank large numbers of species simultaneously with an index of establishment. A global presence/absence dataset including 180 economically significant fruit fly species in 118 countries was analysed using a SOM. We compare and contrast ranked lists from six countries selected from each continent, and also show that those countries geographically close were clustered together by the SOM analysis because they have similar fruit fly assemblages. These closely clustered countries therefore represent greater threats to each other as sources of invasive fruit fly species. Finally, we indicate how this SOM method could be utilized as an initial screen to support prioritizing fruit fly species for further research into their potential to invade a region. PMID:25588025

  11. The importance of an alternative for sustainability of agriculture around the periphery of the Amazon rainforest.

    PubMed

    Moura, Emanoel G; Sena, Virley G L; Corrêa, Mariana S; Aguiar, Alana das C F

    2013-04-01

    The unsustainable use of the soil of the deforested area at the Amazonian border is one of the greatest threats to the rainforest, because it is the predominant cause of shifting cultivation in the region. The sustainable management of soils with low natural fertility is a major challenge for smallholder agriculture in the humid tropics. In the periphery of Brazilian Amazonia, agricultural practices that are recommended for the Brazilian savannah, such as saturating soils with soluble nutrients do not ensure the sustainability of agroecosystems. Improvements in the tilled topsoil cannot be maintained if deterioration of the porous soil structure is not prevented and nutrient losses in the root zone are not curtailed. The information gleaned from experiments affirms that in the management of humid tropical agrosystems, the processes resulting from the interaction between climatic factors and indicators of soil quality must be taken into consideration. It must be remembered that these interactions manifest themselves in ways that cannot be predicted from the paradigm established in the other region like the southeast of Brazil, which is based only on improving the chemical indicators of soil quality. The physical indicators play important role in the sustainable management of the agrosystems of the region and for these reasons must be considered. Therefore, alley cropping is a potential substitute for slash and burn agriculture in the humid tropics with both environmental and agronomic advantages, due to its ability to produce a large amount of residues on the soil surface and its effect on the increase of economic crop productivity in the long term. The article presents some promising patents on the importance of an alternative for sustainability of agriculture.

  12. Urban activities influence on Phytophthora species diversity in British Columbia, Canada

    Treesearch

    Angela Dale; Nicolas Feau; Julien Ponchart; Guillaume Bilodeau; Jean Berube; R.C. Hamelin

    2017-01-01

    Phytophthora de Bary, a genus of Oomycetes, is known as a plant pathogenic genus. The best-known species infect a wide range of hosts, including economically valuable angiosperm and gymnosperm tree species and important agricultural crops. Many Phytophthora are invasive and have been disseminated through nursery and...

  13. Agricultural factors affecting Fusarium communities in wheat kernels.

    PubMed

    Karlsson, Ida; Friberg, Hanna; Kolseth, Anna-Karin; Steinberg, Christian; Persson, Paula

    2017-07-03

    Fusarium head blight (FHB) is a devastating disease of cereals caused by Fusarium fungi. The disease is of great economic importance especially owing to reduced grain quality due to contamination by a range of mycotoxins produced by Fusarium. Disease control and prediction is difficult because of the many Fusarium species associated with FHB. Different species may respond differently to control methods and can have both competitive and synergistic interactions. Therefore, it is important to understand how agricultural practices affect Fusarium at the community level. Lower levels of Fusarium mycotoxin contamination of organically produced cereals compared with conventionally produced have been reported, but the causes of these differences are not well understood. The aim of our study was to investigate the effect of agricultural factors on Fusarium abundance and community composition in different cropping systems. Winter wheat kernels were collected from 18 organically and conventionally cultivated fields in Sweden, paired based on their geographical distance and the wheat cultivar grown. We characterised the Fusarium community in harvested wheat kernels using 454 sequencing of translation elongation factor 1-α amplicons. In addition, we quantified Fusarium spp. using real-time PCR to reveal differences in biomass between fields. We identified 12 Fusarium operational taxonomic units (OTUs) with a median of 4.5 OTUs per field. Fusarium graminearum was the most abundant species, while F. avenaceum had the highest occurrence. The abundance of Fusarium spp. ranged two orders of magnitude between fields. Two pairs of Fusarium species co-occurred between fields: F. poae with F. tricinctum and F. culmorum with F. sporotrichoides. We could not detect any difference in Fusarium communities between the organic and conventional systems. However, agricultural intensity, measured as the number of pesticide applications and the amount of nitrogen fertiliser applied, had an

  14. The Importance of Species Name Synonyms in Literature Searches.

    PubMed

    Guala, Gerald F

    2016-01-01

    The synonyms of biological species names are shown to be an important component in comprehensive searches of electronic scientific literature databases but they are not well leveraged within the major literature databases examined. For accepted or valid species names in the Integrated Taxonomic Information System (ITIS) which have synonyms in the system, and which are found in citations within PLoS, PMC, PubMed or Scopus, both the percentage of species for which citations will not be found if synonyms are not used, and the percentage increase in number of citations found by including synonyms are very often substantial. However, there is no correlation between the number of synonyms per species and the magnitude of the effect. Further, the number of citations found does not generally increase proportionally to the number of synonyms available. Users looking for literature on specific species across all of the resources investigated here are often missing large numbers of citations if they are not manually augmenting their searches with synonyms. Of course, missing citations can have serious consequences by effectively hiding critical information. Literature searches should include synonym relationships and a new web service in ITIS, with examples of how to apply it to this issue, was developed as a result of this study, and is here announced, to aide in this.

  15. The importance of species name synonyms in literature searches

    USGS Publications Warehouse

    Guala, Gerald

    2016-01-01

    The synonyms of biological species names are shown to be an important component in comprehensive searches of electronic scientific literature databases but they are not well leveraged within the major literature databases examined. For accepted or valid species names in the Integrated Taxonomic Information System (ITIS) which have synonyms in the system, and which are found in citations within PLoS, PMC, PubMed or Scopus, both the percentage of species for which citations will not be found if synonyms are not used, and the percentage increase in number of citations found by including synonyms are very often substantial. However, there is no correlation between the number of synonyms per species and the magnitude of the effect. Further, the number of citations found does not generally increase proportionally to the number of synonyms available. Users looking for literature on specific species across all of the resources investigated here are often missing large numbers of citations if they are not manually augmenting their searches with synonyms. Of course, missing citations can have serious consequences by effectively hiding critical information. Literature searches should include synonym relationships and a new web service in ITIS, with examples of how to apply it to this issue, was developed as a result of this study, and is here announced, to aide in this.

  16. Emerging Agricultural Biotechnologies for Sustainable Agriculture and Food Security.

    PubMed

    Anderson, Jennifer A; Gipmans, Martijn; Hurst, Susan; Layton, Raymond; Nehra, Narender; Pickett, John; Shah, Dilip M; Souza, Thiago Lívio P O; Tripathi, Leena

    2016-01-20

    As global populations continue to increase, agricultural productivity will be challenged to keep pace without overtaxing important environmental resources. A dynamic and integrated approach will be required to solve global food insecurity and position agriculture on a trajectory toward sustainability. Genetically modified (GM) crops enhanced through modern biotechnology represent an important set of tools that can promote sustainable agriculture and improve food security. Several emerging biotechnology approaches were discussed in a recent symposium organized at the 13th IUPAC International Congress of Pesticide Chemistry meeting in San Francisco, CA, USA. This paper summarizes the innovative research and several of the new and emerging technologies within the field of agricultural biotechnology that were presented during the symposium. This discussion highlights how agricultural biotechnology fits within the context of sustainable agriculture and improved food security and can be used in support of further development and adoption of beneficial GM crops.

  17. Entomopathogenic nematodes in agricultural areas in Brazil.

    PubMed

    de Brida, Andressa Lima; Rosa, Juliana Magrinelli Osório; Oliveira, Cláudio Marcelo Gonçalves de; Castro, Bárbara Monteiro de Castro E; Serrão, José Eduardo; Zanuncio, José Cola; Leite, Luis Garrigós; Wilcken, Silvia Renata Siciliano

    2017-04-06

    Entomopathogenic nematodes (EPNs) (Steinernematidae and Heterorhabditidae) can control pests due to the mutualistic association with bacteria that kill the host by septicemia and make the environment favorable for EPNs development and reproduction. The diversity of EPNs in Brazilian soils requires further study. The identification of EPNs, adapted to environmental and climatic conditions of cultivated areas is important for sustainable pest suppression in integrated management programs in agricultural areas of Brazil. The objective was to identify EPNs isolated from agricultural soils with annual, fruit and forest crops in Brazil. Soil samples were collected and stored in 250 ml glass vials. The nematodes were isolated from these samples with live bait traps ([Galleria mellonella L. (Lepidoptera: Pyralidae) larvae]. Infective juveniles were collected with White traps and identified by DNA barcoding procedures by sequencing the D2/D3 expansion of the 28S rDNA region by PCR. EPNs identified in agricultural areas in Brazil were Heterorhabditis amazonensis, Metarhabditis rainai, Oscheios tipulae and Steinernema rarum. These species should be considered pest biocontrol agents in Brazilian agricultural areas.

  18. Development of Species-Specific Primers for Agronomical Thrips and Multiplex Assay for Quarantine Identification of Western Flower Thrips.

    PubMed

    Yeh, W B; Tseng, M J; Chang, N T; Wu, S Y; Tsai, Y S

    2014-10-01

    While morphological identification of thrips species has been difficult because of their minute size and a lack of easily recognizable characteristics, molecular identification based on the development of specific molecular markers can be easily and reliably carried out. Among the known molecular markers, the nuclear internal transcribed spacer (ITS) exhibits distinguishable variations among thrips species. In this study, sequences of ITS2 region of 10 agriculturally important thrips were established to design species-specific primers for polymerase chain reaction (PCR). ITS2 sequence variations within these species were far less than those among species, indicating the suitability of this marker for species-specific primers design. These primers, though with one or two sporadically variable positions, showed a good efficacy within species. The specificity of these primers, examined on thrips species belonging to 15 genera, proved satisfactory. Furthermore, a multiplex PCR was used successfully for identifying Frankliniella occidentalis (Pergande), an insect pest monitored for quarantine purpose, and three additional thrips also commonly found in imported agricultural products and field samples, i.e., Thrips tabaci Lindeman, Thrips hawaiiensis (Morgan), and Frankliniella intonsa (Trybom). This study has demonstrated that specific primers and multiplex PCR based on ITS2 are reliable, convenient, and diagnostic tool to discriminate thrips species of quarantine and agricultural importance. © 2014 Entomological Society of America.

  19. Microgravity as a research tool to improve US agriculture

    NASA Astrophysics Data System (ADS)

    Bula, R. J.; Stankovic, Bratislav

    2000-01-01

    Crop production and utilization are undergoing significant modifications and improvements that emanate from adaptation of recently developed plant biotechnologies. Several innovative technologies will impact US agriculture in the next century. One of these is the transfer of desirable genes from organisms to economically important crop species in a way that cannot be accomplished with traditional plant breeding techniques. Such plant genetic engineering offers opportunities to improve crop species for a number of characteristics as well as use as source materials for specific medical and industrial applications. Although plant genetic engineering is having an impact on development of new crop cultivars, several major constraints limit the application of this technology to selected crop species and genotypes. Consequently, gene transfer systems that overcome these constraints would greatly enhance development of new crop materials. If results of a recent gene transfer experiment conducted in microgravity during a Space Shuttle mission are confirmed, and with the availability of the International Space Station as a permanent space facility, commercial plant transformation activity in microgravity could become a new research tool to improve US agriculture. .

  20. Predicting diameters inside bark for 10 important hardwood species

    Treesearch

    Donald E. Hilt; Everette D. Rast; Herman J. Bailey

    1983-01-01

    General models for predicting DIB/DOB ratios up the stem, applicable over wide geographic areas, have been developed for 10 important hardwood species. Results indicate that the ratios either decrease or remain constant up the stem. Methods for adjusting the general models to local conditions are presented. The prediction models can be used in conjunction with optical...

  1. Low-Intensity Agricultural Landscapes in Transylvania Support High Butterfly Diversity: Implications for Conservation

    PubMed Central

    Loos, Jacqueline; Dorresteijn, Ine; Hanspach, Jan; Fust, Pascal; Rakosy, László; Fischer, Joern

    2014-01-01

    European farmland biodiversity is declining due to land use changes towards agricultural intensification or abandonment. Some Eastern European farming systems have sustained traditional forms of use, resulting in high levels of biodiversity. However, global markets and international policies now imply rapid and major changes to these systems. To effectively protect farmland biodiversity, understanding landscape features which underpin species diversity is crucial. Focusing on butterflies, we addressed this question for a cultural-historic landscape in Southern Transylvania, Romania. Following a natural experiment, we randomly selected 120 survey sites in farmland, 60 each in grassland and arable land. We surveyed butterfly species richness and abundance by walking transects with four repeats in summer 2012. We analysed species composition using Detrended Correspondence Analysis. We modelled species richness, richness of functional groups, and abundance of selected species in response to topography, woody vegetation cover and heterogeneity at three spatial scales, using generalised linear mixed effects models. Species composition widely overlapped in grassland and arable land. Composition changed along gradients of heterogeneity at local and context scales, and of woody vegetation cover at context and landscape scales. The effect of local heterogeneity on species richness was positive in arable land, but negative in grassland. Plant species richness, and structural and topographic conditions at multiple scales explained species richness, richness of functional groups and species abundances. Our study revealed high conservation value of both grassland and arable land in low-intensity Eastern European farmland. Besides grassland, also heterogeneous arable land provides important habitat for butterflies. While butterfly diversity in arable land benefits from heterogeneity by small-scale structures, grasslands should be protected from fragmentation to provide

  2. Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia

    PubMed Central

    Kokashvili, Tamar; Whitehouse, Chris A.; Tskhvediani, Ana; Grim, Christopher J.; Elbakidze, Tinatin; Mitaishvili, Nino; Janelidze, Nino; Jaiani, Ekaterine; Haley, Bradd J.; Lashkhi, Nino; Huq, Anwar; Colwell, Rita R.; Tediashvili, Marina

    2015-01-01

    Among the more than 70 different Vibrio species inhabiting marine, estuarine, and freshwater ecosystems, 12 are recognized as human pathogens. The warm subtropical climate of the Black Sea coastal area and inland regions of Georgia likely provides a favorable environment for various Vibrio species. From 2006 to 2009, the abundance, ecology, and diversity of clinically important Vibrio species were studied in different locations in Georgia and across seasons. Over a 33-month period, 1,595 presumptive Vibrio isolates were collected from the Black Sea (n = 657) and freshwater lakes around Tbilisi (n = 938). Screening of a subset of 440 concentrated and enriched water samples by PCR-electrospray ionization/mass spectrometry (PCR-ESI/MS) detected the presence of DNA from eight clinically important Vibrio species: V. cholerae, V. parahaemolyticus, V. vulnificus, V. mimicus, V. alginolyticus, V. harveyi, V. metschnikovii, and V. cincinnatiensis. Almost 90% of PCR/ESI-MS samples positive for Vibrio species were collected from June through November. Three important human-pathogenic Vibrio species (V. cholerae, V. parahaemolyticus, and V. vulnificus) were detected in 62.8, 37.8, and 21.4% of samples testing positive for Vibrios, respectively. The results of these activities suggest that natural reservoirs for human-pathogenic Vibrios exist in Georgian aquatic environments. Water temperature at all sampling sites was positively correlated with the abundance of clinically important Vibrio spp. (except V. metschnikovii), and salinity was correlated with species composition at particular Black Sea sites as well as inland reservoirs. PMID:26528464

  3. Optical characterization of agricultural pest insects: a methodological study in the spectral and time domains

    NASA Astrophysics Data System (ADS)

    Li, Y. Y.; Zhang, H.; Duan, Z.; Lian, M.; Zhao, G. Y.; Sun, X. H.; Hu, J. D.; Gao, L. N.; Feng, H. Q.; Svanberg, S.

    2016-08-01

    Identification of agricultural pest insects is an important aspect in insect research and agricultural monitoring. We have performed a methodological study of how spectroscopic techniques and wing-beat frequency analysis might provide relevant information. An optical system based on the combination of close-range remote sensing and reflectance spectroscopy was developed to study the optical characteristics of different flying insects, collected in Southern China. The results demonstrate that the combination of wing-beat frequency assessment and reflectance spectral analysis has the potential to successfully differentiate between insect species. Further, studies of spectroscopic characteristics of fixed specimen of insects, also from Central China, showed the possibility of refined agricultural pest identification. Here, in addition to reflectance recordings also laser-induced fluorescence spectra were investigated for all the species of insects under study and found to provide complementary information to optically distinguish insects. In order to prove the practicality of the techniques explored, clearly fieldwork aiming at elucidating the variability of parameters, even within species, must be performed.

  4. A high incidence of parthenogenesis in agricultural pests.

    PubMed

    Hoffmann, Ary A; Reynolds, K Tracy; Nash, Michael A; Weeks, Andrew R

    2008-11-07

    Parthenogenetic species are assumed to represent evolutionary dead ends, yet parthenogenesis is common in some groups of invertebrates particularly in those found in relatively constant environments. This suggests that parthenogenetic reproduction might be common in pest invertebrates from uniform agricultural environments. Based on the evaluations of two databases from North America and Italy, we found that parthenogenetic species comprised 45 per cent (North America) or 48 per cent (Italy) of pest species derived from genera where parthenogenesis occurred, compared with an overall incidence of 10 per cent or 16 per cent in these genera. In establishing these patterns, we included only genera containing at least some member species that reproduced by parthenogenesis. The high incidence of parthenogenesis in pest species is spread across different families and several insect orders. Parthenogenetic reproduction may be favoured in agricultural environments when particular clones have a high fitness across multiple generations. Increasing the complexity and variability of agricultural environments represents one way of potentially controlling parthenogenetic pest species.

  5. A high incidence of parthenogenesis in agricultural pests

    PubMed Central

    Hoffmann, Ary A; Tracy Reynolds, K; Nash, Michael A; Weeks, Andrew R

    2008-01-01

    Parthenogenetic species are assumed to represent evolutionary dead ends, yet parthenogenesis is common in some groups of invertebrates particularly in those found in relatively constant environments. This suggests that parthenogenetic reproduction might be common in pest invertebrates from uniform agricultural environments. Based on the evaluations of two databases from North America and Italy, we found that parthenogenetic species comprised 45 per cent (North America) or 48 per cent (Italy) of pest species derived from genera where parthenogenesis occurred, compared with an overall incidence of 10 per cent or 16 per cent in these genera. In establishing these patterns, we included only genera containing at least some member species that reproduced by parthenogenesis. The high incidence of parthenogenesis in pest species is spread across different families and several insect orders. Parthenogenetic reproduction may be favoured in agricultural environments when particular clones have a high fitness across multiple generations. Increasing the complexity and variability of agricultural environments represents one way of potentially controlling parthenogenetic pest species. PMID:18647717

  6. Nordic-Baltic Student Teachers' Identification of and Interest in Plant and Animal Species: The Importance of Species Identification and Biodiversity for Sustainable Development

    NASA Astrophysics Data System (ADS)

    Palmberg, Irmeli; Berg, Ida; Jeronen, Eila; Kärkkäinen, Sirpa; Norrgård-Sillanpää, Pia; Persson, Christel; Vilkonis, Rytis; Yli-Panula, Eija

    2015-10-01

    Knowledge of species, interest in nature, and nature experiences are the factors that best promote interest in and understanding of environmental issues, biodiversity and sustainable life. The aim of this study is to investigate how well student teachers identify common local species, their interest in and ideas about species identification, and their perceptions of the importance of species identification and biodiversity for sustainable development. Totally 456 student teachers for primary schools were tested using an identification test and a questionnaire consisting of fixed and open questions. A combination of quantitative and qualitative methods was used to get a more holistic view of students' level of knowledge and their preferred learning methods. The student teachers' ability to identify very common species was low, and only 3 % were able to identify most of the tested species. Experiential learning outdoors was suggested by the majority of students as the most efficient learning method, followed by experiential learning indoors, project work and experimental learning. They looked upon the identification of plants and animals as `important' or `very important' for citizens today and for sustainable development. Likewise, they looked upon biodiversity as `important' or `very important' for sustainable development. Our conclusion is that teaching and learning methods for identification and knowledge of species and for education of biodiversity and sustainable development should always include experiential and project-based methods in authentic environments.

  7. Detection of medically important Candida species by absolute quantitation real-time polymerase chain reaction.

    PubMed

    Than, Leslie Thian Lung; Chong, Pei Pei; Ng, Kee Peng; Seow, Heng Fong

    2015-01-01

    The number of invasive candidiasis cases has risen especially with an increase in the number of immunosuppressed and immunocom promised patients. The early detection of Candida species which is specific and sensitive is important in determining the correct administration of antifungal drugs to patients. This study aims to develop a method for the detection, identification and quantitation of medically important Candida species through quantitative polymerase chain reaction (qPCR). The isocitrate lyase (ICL) gene which is not found in mammals was chosen as the target gene of real-time PCR. Absolute quantitation of the gene copy number was achieved by constructing the plasmid containing the ICL gene which is used to generate standard curve. Twenty fungal species, two bacterial species and human DNA were tested to check the specificity of the detection method. All eight Candida species were successfully detected, identified and quantitated based on the ICL gene. A seven-log range of the gene copy number and a minimum detection limit of 10(3) copies were achieved. A one-tube absolute quantification real-time PCR that differentiates medically important Candida species via individual unique melting temperature was achieved. Analytical sensitivity and specificity were not compromised.

  8. Fusarium Species and Their Associated Mycotoxins.

    PubMed

    Munkvold, Gary P

    2017-01-01

    The genus Fusarium includes numerous toxigenic species that are pathogenic to plants or humans, and are able to colonize a wide range of environments on earth. The genus comprises around 70 well-known species, identified by using a polyphasic approach, and as many as 300 putative species, according to phylogenetic species concepts; many putative species do not yet have formal names. Fusarium is one of the most economically important fungal genera because of yield loss due to plant pathogenic activity; mycotoxin contamination of food and feed products which often render them unaccep for marketing; and health impacts to humans and livestock, due to consumption of mycotoxins. Among the most important mycotoxins produced by species of Fusarium are the trichothecenes and the fumonisins. Fumonisins cause fatal livestock diseases and are considered potentially carcinogenic mycotoxins for humans, while trichothecenes are potent inhibitors of protein synthesis. This chapter summarizes the main aspects of morphology, pathology, and toxigenicity of the main Fusarium species that colonize different agricultural crops and environments worldwide, and cause mycotoxin contamination of food and feed.

  9. Important LiDAR metrics for discriminating forest tree species in Central Europe

    NASA Astrophysics Data System (ADS)

    Shi, Yifang; Wang, Tiejun; Skidmore, Andrew K.; Heurich, Marco

    2018-03-01

    Numerous airborne LiDAR-derived metrics have been proposed for classifying tree species. Yet an in-depth ecological and biological understanding of the significance of these metrics for tree species mapping remains largely unexplored. In this paper, we evaluated the performance of 37 frequently used LiDAR metrics derived under leaf-on and leaf-off conditions, respectively, for discriminating six different tree species in a natural forest in Germany. We firstly assessed the correlation between these metrics. Then we applied a Random Forest algorithm to classify the tree species and evaluated the importance of the LiDAR metrics. Finally, we identified the most important LiDAR metrics and tested their robustness and transferability. Our results indicated that about 60% of LiDAR metrics were highly correlated to each other (|r| > 0.7). There was no statistically significant difference in tree species mapping accuracy between the use of leaf-on and leaf-off LiDAR metrics. However, combining leaf-on and leaf-off LiDAR metrics significantly increased the overall accuracy from 58.2% (leaf-on) and 62.0% (leaf-off) to 66.5% as well as the kappa coefficient from 0.47 (leaf-on) and 0.51 (leaf-off) to 0.58. Radiometric features, especially intensity related metrics, provided more consistent and significant contributions than geometric features for tree species discrimination. Specifically, the mean intensity of first-or-single returns as well as the mean value of echo width were identified as the most robust LiDAR metrics for tree species discrimination. These results indicate that metrics derived from airborne LiDAR data, especially radiometric metrics, can aid in discriminating tree species in a mixed temperate forest, and represent candidate metrics for tree species classification and monitoring in Central Europe.

  10. Effect of widespread agricultural chemical use on butterfly diversity across Turkish provinces.

    PubMed

    Pekin, Burak K

    2013-12-01

    Although agricultural intensification is thought to pose a significant threat to species, little is known about its role in driving biodiversity loss at regional scales. I assessed the effects of a major component of agricultural intensification, agricultural chemical use, and land-cover and climatic variables on butterfly diversity across 81 provinces in Turkey, where agriculture is practiced extensively but with varying degrees of intensity. I determined butterfly species presence in each province from data on known butterfly distributions and calculated agricultural chemical use as the proportion of agricultural households that use chemical fertilizers and pesticides. I used constrained correspondence analyses and regression-based multimodel inference to determine the effect of environmental variables on species composition and richness, respectively. The variation in butterfly species composition across the provinces was largely explained (78%) by the combination of agricultural chemical use, particularly pesticides, and climatic and land-cover variables. Although overall butterfly richness was primarily explained by climatic and land-cover variables, such as the area of natural vegetation cover, threatened butterfly richness and the relative number of threatened butterfly species decreased substantially as the proportion of agricultural households using pesticides increased. These findings suggest that widespread use of agricultural chemicals, or other components of agricultural intensification that may be collinear with pesticide use, pose an imminent threat to the biodiversity of Turkey. Accordingly, policies that mitigate agricultural intensification and promote low-input farming practices are crucial for protecting threatened species from extinction in rapidly industrializing nations such as Turkey. Efectos del Uso Extensivo de Agroquímicos sobre la Diversidad de Mariposas en Provincias Turcas. © 2013 Society for Conservation Biology.

  11. A landscape ecology approach identifies important drivers of urban biodiversity.

    PubMed

    Turrini, Tabea; Knop, Eva

    2015-04-01

    Cities are growing rapidly worldwide, yet a mechanistic understanding of the impact of urbanization on biodiversity is lacking. We assessed the impact of urbanization on arthropod diversity (species richness and evenness) and abundance in a study of six cities and nearby intensively managed agricultural areas. Within the urban ecosystem, we disentangled the relative importance of two key landscape factors affecting biodiversity, namely the amount of vegetated area and patch isolation. To do so, we a priori selected sites that independently varied in the amount of vegetated area in the surrounding landscape at the 500-m scale and patch isolation at the 100-m scale, and we hold local patch characteristics constant. As indicator groups, we used bugs, beetles, leafhoppers, and spiders. Compared to intensively managed agricultural ecosystems, urban ecosystems supported a higher abundance of most indicator groups, a higher number of bug species, and a lower evenness of bug and beetle species. Within cities, a high amount of vegetated area increased species richness and abundance of most arthropod groups, whereas evenness showed no clear pattern. Patch isolation played only a limited role in urban ecosystems, which contrasts findings from agro-ecological studies. Our results show that urban areas can harbor a similar arthropod diversity and abundance compared to intensively managed agricultural ecosystems. Further, negative consequences of urbanization on arthropod diversity can be mitigated by providing sufficient vegetated space in the urban area, while patch connectivity is less important in an urban context. This highlights the need for applying a landscape ecological approach to understand the mechanisms shaping urban biodiversity and underlines the potential of appropriate urban planning for mitigating biodiversity loss. © 2015 John Wiley & Sons Ltd.

  12. Multiple Determinants of Anuran Richness and Occurrence in an Agricultural Region in South-Eastern Brazil

    NASA Astrophysics Data System (ADS)

    Prado, Vitor H. M.; Rossa-Feres, Denise de C.

    2014-04-01

    In agricultural landscapes, studies that identify factors driving species richness and occupancy are important because they can guide farmers to use conservation practices that minimize species loss. In this context, anurans are threatened by habitat loss because they depend on the characteristics of both local water bodies and adjacent landscapes. We used a model selection approach to evaluate the influence of local and landscape variables in determining anuran species richness and occurrence in 40 freshwater bodies in a heavily deforested region of semideciduous Atlantic Forest in southeastern Brazil. Our aim was to develop recommendations for conservation of anuran communities in rural areas. Pond hydroperiod and area were the most important variables for explaining anuran species richness and occupancy, with greatest species richness being found in water bodies with intermediate hydroperiod and area. Other important variables that reflected individual species occupancies were the number of vegetation types and pond isolation. In addition, recent studies evidenced that water bodies near forest fragments have higher anuran abundance or diversity. In conclusion, we suggest the maintenance of semi-permanent ponds, isolated from large rivers or reservoirs and near forest fragments, as an effective strategy to conserve anuran fauna in agricultural landscapes of southeastern Brazil. Brazilian government requires the maintenance of forests as legal reserve in each farm, and farmers need to maintain ponds as drinking water for cattle or crop irrigation. For this reason, the guidelines suggested in the present study can be easily adopted, without additional costs to rural productivity.

  13. Biodiversity and Ecosystem Functioning: Exploring Principles of Ecology with Agricultural Plants

    ERIC Educational Resources Information Center

    Ruesink, Jennifer; O'Connor, Eileen; Sparks, Grace

    2006-01-01

    To date, little of the ecological research on biological diversity and ecosystem functioning has been carried out in agricultural systems, despite the fact that agriculture is a major contributor to loss of native habitats and species. However, agricultural research has demonstrated that polycultures of multiple crop species can have higher total…

  14. Microbial effects on the development of forensically important blow fly species.

    PubMed

    Crooks, Esther R; Bulling, Mark T; Barnes, Kate M

    2016-09-01

    Colonisation times and development rates of specific blow fly species are used to estimate the minimum Post Mortem Interval (mPMI). The presence or absence of bacteria on a corpse can potentially affect the development and survival of blow fly larvae. Therefore an understanding of microbial-insect interactions is important for improving the interpretation of mPMI estimations. In this study, the effect of two bacteria (Escherichia coli and Staphylococcus aureus) on the growth rate and survival of three forensically important blow fly species (Lucilia sericata, Calliphora vicina and Calliphora vomitoria) was investigated. Sterile larvae were raised in a controlled environment (16:8h day: night light cycle, 23:21°C day: night temperature cycle and a constant 35% relative humidity) on four artificial diets prepared with 100μl of 10(5) CFU bacterial solutions as follows: (1) E. coli, (2) S. aureus, (3) a 50:50 E. coli:S. aureus mix and (4) a sterile bacteria-free control diet. Daily measurements (length, width and weight) were taken from first instar larvae through to the emergence of adult flies. Survival rates were also determined at pupation and adult emergence. Results indicate that bacteria were not essential for the development of any of the blow fly species. However, larval growth rates were affected by bacterial diet, with effects differing between blow fly species. Peak larval weights also varied according to species-diet combination; C. vomitoria had the largest weight on E. coli and mixed diets, C. vicina had the largest weight on S. aureus diets, and treatment had no significant effect on the peak larval weight of L. sericata. These results indicate the potential for the bacteria that larvae are exposed to during development on a corpse to alter both developmental rates and larval weight in some blow fly species. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  15. Brine shrimp bioassay: importance of correct taxonomic identification of Artemia (Anostraca) species.

    PubMed

    Ruebhart, David R; Cock, Ian E; Shaw, Glen R

    2008-08-01

    Despite the common use of the brine shrimp bioassay in toxicology, there is confusion in the literature regarding citation of the correct taxonomic identity of the Artemia species used. The genus Artemia, once thought to be represented by a single species Artemia salina, is now known to be composed of several bisexual species as well as parthenogenetic populations. Artemia franciscana is the best studied of the Artemia species and is considered to represent the vast majority of studies in which Artemia is used as an experimental test organism. We found that in studies referring to the use of A. salina, the zoogeography of the cyst harvest site indicated that the species used was actually A. franciscana. Those performing bioassays with Artemia need to exercise diligence in assigning correct species identification, as the identity of the test organism is an important parameter in assuring the validity of the results of the assay.

  16. Preplanting Treatments and Natural Invasion of Tree Species Onto Former Agricultural Fields at the Tensas River National Wildlife Refuge, Louisiana

    Treesearch

    John W. McCoy; Bobby D. Keeland; Brian Roy Lockhart; Thomas Dean

    2002-01-01

    As part of a study of oak planting techniques for bottomland hardwood afforestation we examined the natural invasion of woody species onto former agricultural fields at Tensas River National Wildlife Refuge. Three replications of 14 treatments were established as 0.4 hectare (1 acre) plots in a complete randomized block design. Combinations of these treatments were...

  17. 7 CFR 1210.314 - Importer.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Importer. 1210.314 Section 1210.314 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS... PLAN Watermelon Research and Promotion Plan Definitions § 1210.314 Importer. Importer means any person...

  18. 7 CFR 1206.9 - Importer.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Importer. 1206.9 Section 1206.9 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS... INFORMATION Mango Promotion, Research, and Information Order Definitions § 1206.9 Importer. Importer means any...

  19. Honeybees Increase Fruit Set in Native Plant Species Important for Wildlife Conservation

    NASA Astrophysics Data System (ADS)

    Cayuela, Luis; Ruiz-Arriaga, Sarah; Ozers, Christian P.

    2011-11-01

    Honeybee colonies are declining in some parts of the world. This may have important consequences for the pollination of crops and native plant species. In Spain, as in other parts of Europe, land abandonment has led to a decrease in the number of non professional beekeepers, which aggravates the problem of honeybee decline as a result of bee diseases In this study, we investigated the effects of honeybees on the pollination of three native plant species in northern Spain, namely wildcherry Prunus avium L., hawthorn Crataegus monogyna Jacq., and bilberry Vaccinium myrtillus L. We quantified fruit set of individuals from the target species along transects established from an apiary outwards. Half the samples were bagged in a nylon mesh to avoid insect pollination. Mixed-effects models were used to test the effect of distance to the apiary on fruit set in non-bagged samples. The results showed a negative significant effect of distance from the apiary on fruit set for hawthorn and bilberry, but no significant effects were detected for wildcherry. This suggests that the use of honeybees under traditional farming practices might be a good instrument to increase fruit production of some native plants. This may have important consequences for wildlife conservation, since fruits, and bilberries in particular, constitute an important feeding resource for endangered species, such as the brown bear Ursus arctos L. or the capercaillie Tetrao urogallus cantabricus L.

  20. Honeybees increase fruit set in native plant species important for wildlife conservation.

    PubMed

    Cayuela, Luis; Ruiz-Arriaga, Sarah; Ozers, Christian P

    2011-11-01

    Honeybee colonies are declining in some parts of the world. This may have important consequences for the pollination of crops and native plant species. In Spain, as in other parts of Europe, land abandonment has led to a decrease in the number of non professional beekeepers, which aggravates the problem of honeybee decline as a result of bee diseases In this study, we investigated the effects of honeybees on the pollination of three native plant species in northern Spain, namely wildcherry Prunus avium L., hawthorn Crataegus monogyna Jacq., and bilberry Vaccinium myrtillus L. We quantified fruit set of individuals from the target species along transects established from an apiary outwards. Half the samples were bagged in a nylon mesh to avoid insect pollination. Mixed-effects models were used to test the effect of distance to the apiary on fruit set in non-bagged samples. The results showed a negative significant effect of distance from the apiary on fruit set for hawthorn and bilberry, but no significant effects were detected for wild cherry. This suggests that the use of honeybees under traditional farming practices might be a good instrument to increase fruit production of some native plants. This may have important consequences for wildlife conservation, since fruits, and bilberries in particular, constitute an important feeding resource for endangered species, such as the brown bear Ursus arctos L. or the capercaillie Tetrao urogallus cantabricus L.

  1. Agricultural Biodiversity.

    ERIC Educational Resources Information Center

    Postance, Jim

    1998-01-01

    The extinction of farm animals and crops is rarely brought up during discussions of endangered species and biodiversity; however, the loss of diversity in crops and livestock threatens the sustainability of agriculture. Presents three activities: (1) "The Colors of Diversity"; (2) "Biodiversity among Animals"; and (3) "Heirloom Plants." Discusses…

  2. Raw sugarcane bagasse as carbon source for xylanase production by Paenibacillus species: a potential degrader of agricultural wastes.

    PubMed

    Di Marco, Enzo; Soraire, Pablo M; Romero, Cintia M; Villegas, Liliana B; Martínez, María Alejandra

    2017-08-01

    Paenibacillus species isolated from a variety of natural sources have shown to be important glycoside hydrolases producers. These enzymes play a key role in bio-refining applications, as they are central biocatalysts for the processing of different types of polymers from vegetal biomass. Xylanase production by three native isolates belonging to the genus Paenibacillus was approached by utilizing mineral-based medium and agricultural by-products as a convenient source to produce biocatalysts suitable for their degradation. While varieties of alkali pretreated sugarcane bagasse were useful substrates for the strains from Paenibacillus genus evaluated, raw sugarcane bagasse was the most effective substrate for endoxylanase production by Paenibacillus sp. AR247. This strain was then selected to further improvement of its enzyme production by means of a two-step statistical approach. It was determined that the carbon source, provided as an inexpensive agro-waste, as well as phosphate and magnesium were the culture media components that most influenced the enzyme production, which was improved three times compared to the screening results.

  3. NON-INDIGENOUS SPECIES: IMPORTANT BIOLOGICAL STRESSORS

    EPA Science Inventory

    A model for predicting where certain species will invade next is being developed and tested in cooperation with researchers at the University of Kansas. Human activities have increased the wholesale movement, either accidental or deliberate, of many species of animals and plants ...

  4. Ecological mechanisms underlying the sustainability of the agricultural heritage rice-fish coculture system.

    PubMed

    Xie, Jian; Hu, Liangliang; Tang, Jianjun; Wu, Xue; Li, Nana; Yuan, Yongge; Yang, Haishui; Zhang, Jiaen; Luo, Shiming; Chen, Xin

    2011-12-13

    For centuries, traditional agricultural systems have contributed to food and livelihood security throughout the world. Recognizing the ecological legacy in the traditional agricultural systems may help us develop novel sustainable agriculture. We examine how rice-fish coculture (RF), which has been designated a "globally important agricultural heritage system," has been maintained for over 1,200 y in south China. A field survey demonstrated that although rice yield and rice-yield stability are similar in RF and rice monoculture (RM), RF requires 68% less pesticide and 24% less chemical fertilizer than RM. A field experiment confirmed this result. We documented that a mutually beneficial relationship between rice and fish develops in RF: Fish reduce rice pests and rice favors fish by moderating the water environment. This positive relationship between rice and fish reduces the need for pesticides in RF. Our results also indicate a complementary use of nitrogen (N) between rice and fish in RF, resulting in low N fertilizer application and low N release into the environment. These findings provide unique insights into how positive interactions and complementary use of resource between species generate emergent ecosystem properties and how modern agricultural systems might be improved by exploiting synergies between species.

  5. Convergence and divergence in a long-term old-field succession: the importance of spatial scale and species abundance.

    PubMed

    Li, Shao-Peng; Cadotte, Marc W; Meiners, Scott J; Pu, Zhichao; Fukami, Tadashi; Jiang, Lin

    2016-09-01

    Whether plant communities in a given region converge towards a particular stable state during succession has long been debated, but rarely tested at a sufficiently long time scale. By analysing a 50-year continuous study of post-agricultural secondary succession in New Jersey, USA, we show that the extent of community convergence varies with the spatial scale and species abundance classes. At the larger field scale, abundance-based dissimilarities among communities decreased over time, indicating convergence of dominant species, whereas incidence-based dissimilarities showed little temporal tend, indicating no sign of convergence. In contrast, plots within each field diverged in both species composition and abundance. Abundance-based successional rates decreased over time, whereas rare species and herbaceous plants showed little change in temporal turnover rates. Initial abandonment conditions only influenced community structure early in succession. Overall, our findings provide strong evidence for scale and abundance dependence of stochastic and deterministic processes over old-field succession. © 2016 John Wiley & Sons Ltd/CNRS.

  6. Scale dependent drivers of wild bee diversity in tropical heterogeneous agricultural landscapes.

    PubMed

    Basu, Parthiba; Parui, Arpan Kumar; Chatterjee, Soumik; Dutta, Aditi; Chakraborty, Pushan; Roberts, Stuart; Smith, Barbara

    2016-10-01

    affect wild bee diversity at the scale of landscape and patch in heterogeneous tropical agricultural systems. The differential response of bee functional groups to agricultural intensification underpins the need for guild-specific management strategies for wild bee conservation. Less intensively farmed areas support more rare species and are vulnerable to disturbance; consequently, these areas should be prioritized for conservation to maintain heterogeneity in the landscape. It is important to conserve and restore seminatural habitats to maintain complexity in the landscapes through participatory processes and to regulate synthetic chemical pesticides in farm operations to conserve the species and functional diversity of wild bees.

  7. Ask a Question | National Agricultural Library

    Science.gov Websites

    Nutrition Invasive Species Marketing and Trade Natural Resources and Environment Plants and Crops Research Animal Welfare Food and Nutrition General Collections Quarterly Review Pasture, Forage and Rangeland Farmers Sustainable Agriculture Veterans in Agriculture Food and Human Nutrition Dietary Guidelines and

  8. Testing projected wild bee distributions in agricultural habitats: predictive power depends on species traits and habitat type.

    PubMed

    Marshall, Leon; Carvalheiro, Luísa G; Aguirre-Gutiérrez, Jesús; Bos, Merijn; de Groot, G Arjen; Kleijn, David; Potts, Simon G; Reemer, Menno; Roberts, Stuart; Scheper, Jeroen; Biesmeijer, Jacobus C

    2015-10-01

    Species distribution models (SDM) are increasingly used to understand the factors that regulate variation in biodiversity patterns and to help plan conservation strategies. However, these models are rarely validated with independently collected data and it is unclear whether SDM performance is maintained across distinct habitats and for species with different functional traits. Highly mobile species, such as bees, can be particularly challenging to model. Here, we use independent sets of occurrence data collected systematically in several agricultural habitats to test how the predictive performance of SDMs for wild bee species depends on species traits, habitat type, and sampling technique. We used a species distribution modeling approach parametrized for the Netherlands, with presence records from 1990 to 2010 for 193 Dutch wild bees. For each species, we built a Maxent model based on 13 climate and landscape variables. We tested the predictive performance of the SDMs with independent datasets collected from orchards and arable fields across the Netherlands from 2010 to 2013, using transect surveys or pan traps. Model predictive performance depended on species traits and habitat type. Occurrence of bee species specialized in habitat and diet was better predicted than generalist bees. Predictions of habitat suitability were also more precise for habitats that are temporally more stable (orchards) than for habitats that suffer regular alterations (arable), particularly for small, solitary bees. As a conservation tool, SDMs are best suited to modeling rarer, specialist species than more generalist and will work best in long-term stable habitats. The variability of complex, short-term habitats is difficult to capture in such models and historical land use generally has low thematic resolution. To improve SDMs' usefulness, models require explanatory variables and collection data that include detailed landscape characteristics, for example, variability of crops and

  9. Does Prior Experience in Secondary Agricultural Mechanics Affect Pre-Service Agricultural Education Teachers' Intentions to Enroll in Post-Secondary Agricultural Mechanics Coursework?

    ERIC Educational Resources Information Center

    Wells, Trent; Perry, Dustin K.; Anderson, Ryan G.; Shultz, Matthew J.; Paulsen, Thomas H.

    2013-01-01

    Agricultural mechanics coursework has historically been considered an important and necessary construct of the secondary agricultural education curriculum (Burris, Robinson, & Terry, 2005). With expectations of offering secondary agricultural mechanics coursework apparent, it is vital that agricultural education teachers be prepared to address…

  10. Biotechnology and Agriculture.

    ERIC Educational Resources Information Center

    Kenney, Martin

    Even at this early date in the application of biotechnology to agriculture, it is clear that agriculture may provide the largest market for new or less expensive biotechnologically manufactured products. The chemical and pharmaceutical industries that hold important positions in agricultural inputs are consolidating their positions by purchasing…

  11. Intensive agriculture erodes β-diversity at large scales.

    PubMed

    Karp, Daniel S; Rominger, Andrew J; Zook, Jim; Ranganathan, Jai; Ehrlich, Paul R; Daily, Gretchen C

    2012-09-01

    Biodiversity is declining from unprecedented land conversions that replace diverse, low-intensity agriculture with vast expanses under homogeneous, intensive production. Despite documented losses of species richness, consequences for β-diversity, changes in community composition between sites, are largely unknown, especially in the tropics. Using a 10-year data set on Costa Rican birds, we find that low-intensity agriculture sustained β-diversity across large scales on a par with forest. In high-intensity agriculture, low local (α) diversity inflated β-diversity as a statistical artefact. Therefore, at small spatial scales, intensive agriculture appeared to retain β-diversity. Unlike in forest or low-intensity systems, however, high-intensity agriculture also homogenised vegetation structure over large distances, thereby decoupling the fundamental ecological pattern of bird communities changing with geographical distance. This ~40% decline in species turnover indicates a significant decline in β-diversity at large spatial scales. These findings point the way towards multi-functional agricultural systems that maintain agricultural productivity while simultaneously conserving biodiversity. © 2012 Blackwell Publishing Ltd/CNRS.

  12. [Effects of agricultural activities and transgenic crops on agricultural biodiversity].

    PubMed

    Zhang, Xi-Tao; Luo, Hong-Bing; Li, Jun-Sheng; Huang, Hai; Liu, Yong-Bo

    2014-09-01

    Agricultural biodiversity is a key part of the ecosystem biodiversity, but it receives little concern. The monoculture, environmental pollution and habitat fragmentation caused by agricultural activities have threatened agricultural biodiversity over the past 50 years. To optimize agricultural management measures for crop production and environmental protection, we reviewed the effects of agricultural activities, including cultivation patterns, plastic mulching, chemical additions and the cultivation of transgenic crops, on agricultural biodiversity. The results showed that chemical pesticides and fertilizers had the most serious influence and the effects of transgenic crops varied with other factors like the specific transgene inserted in crops. The environmental risk of transgenic crops should be assessed widely through case-by-case methods, particularly its potential impacts on agricultural biodiversity. It is important to consider the protection of agricultural biodiversity before taking certain agricultural practices, which could improve agricultural production and simultaneously reduce the environmental impacts.

  13. Enhancing early detection of exotic pests in agricultural and forest ecosystems using an urban-gradient framework.

    PubMed

    Colunga-Garcia, Manuel; Magarey, Roger A; Haack, Robert A; Gage, Stuart H; Qi, Jiaquo

    2010-03-01

    Urban areas are hubs of international transport and therefore are major gateways for exotic pests. Applying an urban gradient to analyze this pathway could provide insight into the ecological processes involved in human-mediated invasions. We defined an urban gradient for agricultural and forest ecosystems in the contiguous United States to (1) assess whether ecosystems nearer more urbanized areas were at greater risk of invasion, and (2) apply this knowledge to enhance early detection of exotic pests. We defined the gradient using the tonnage of imported products in adjacent urban areas and their distance to nearby agricultural or forest land. County-level detection reports for 39 exotic agricultural and forest pests of major economic importance were used to characterize invasions along the gradient. We found that counties with more exotic pests were nearer the urban end of the gradient. Assuming that the exotic species we analyzed represent typical invaders, then early detection efforts directed at 21-26% of U.S. agricultural and forest land would likely be able to detect 70% of invaded counties and 90% of the selected species. Applying an urban-gradient framework to current monitoring strategies should enhance early detection efforts of exotic pests, facilitating optimization in allocating resources to areas at greater risk of future invasions.

  14. Pollinator declines. Extinctions of aculeate pollinators in Britain and the role of large-scale agricultural changes.

    PubMed

    Ollerton, Jeff; Erenler, Hilary; Edwards, Mike; Crockett, Robin

    2014-12-12

    Pollinators are fundamental to maintaining both biodiversity and agricultural productivity, but habitat destruction, loss of flower resources, and increased use of pesticides are causing declines in their abundance and diversity. Using historical records, we assessed the rate of extinction of bee and flower-visiting wasp species in Britain from the mid-19th century to the present. The most rapid phase of extinction appears to be related to changes in agricultural policy and practice beginning in the 1920s, before the agricultural intensification prompted by the Second World War, often cited as the most important driver of biodiversity loss in Britain. Slowing of the extinction rate from the 1960s onward may be due to prior loss of the most sensitive species and/or effective conservation programs. Copyright © 2014, American Association for the Advancement of Science.

  15. Farmers' perception of termites in agriculture production and their indigenous utilization in Northwest Benin.

    PubMed

    Yêyinou Loko, Laura Estelle; Orobiyi, Azize; Agre, Paterne; Dansi, Alexandre; Tamò, Manuele; Roisin, Yves

    2017-11-21

    Although termites are considered as agricultural pests, they play an important role in maintaining the ecosystem. Therefore, it matters to investigate the farmers' perception of the impacts of the termites on the agriculture and their indigenous utilization. A semi-structured questionnaire was used to interview 94 farmers through 10 villages of Atacora department, in the northwestern region of Benin, to obtain information for the development of successful strategies of termite management and conservation. Their perceptions on the importance and management of termites along with the indigenous nomenclature and utilization of termite mounds were assessed. Termite species identified by farmers were collected and preserved in 80% alcohol for identification. Eight crops were identified by farmers as susceptible to termites with maize, sorghum, and yam as being the most susceptible. According to farmers, the susceptibility to termites of these crops is due to their high-water content and sweet taste. A total of 27 vernacular names of termites were recorded corresponding to 10 species, Amitermes evuncifer, Macrotermes subhyalinus, and Trinervitermes oeconomus being the most damaging termite species. All the names given to termite species had a meaning. The drought was identified by farmers as the main factor favouring termite attacks. Demolition of termite mounds in the fields was the most commonly reported control method. Salt and other pesticides were commonly used by farmers to protect stored farm products. The lack of effective control methods is the main constraint for termite management. In northwestern Benin, farmers reported different purpose utilizations of termite mounds and termites. The study has shown that farmers perceived termites as pests of several agricultural crops and apply various indigenous control practices whose efficiency need to be verified. Utilization of termites and termite mound soil as food and medicinal resources underlines the need for a

  16. Threats from urban expansion, agricultural transformation and forest loss on global conservation priority areas.

    PubMed

    Veach, Victoria; Moilanen, Atte; Di Minin, Enrico

    2017-01-01

    Including threats in spatial conservation prioritization helps identify areas for conservation actions where biodiversity is at imminent risk of extinction. At the global level, an important limitation when identifying spatial priorities for conservation actions is the lack of information on the spatial distribution of threats. Here, we identify spatial conservation priorities under three prominent threats to biodiversity (residential and commercial development, agricultural expansion, and forest loss), which are primary drivers of habitat loss and threaten the persistence of the highest number of species in the International Union for the Conservation of Nature (IUCN) Red List, and for which spatial data is available. We first explore how global priority areas for the conservation of vertebrate (mammals, birds, and amphibians) species coded in the Red List as vulnerable to each threat differ spatially. We then identify spatial conservation priorities for all species vulnerable to all threats. Finally, we identify the potentially most threatened areas by overlapping the identified priority areas for conservation with maps for each threat. We repeat the same with four other well-known global conservation priority area schemes, namely Key Biodiversity Areas, Biodiversity Hotspots, the global Protected Area Network, and Wilderness Areas. We find that residential and commercial development directly threatens only about 4% of the global top 17% priority areas for species vulnerable under this threat. However, 50% of the high priority areas for species vulnerable to forest loss overlap with areas that have already experienced some forest loss. Agricultural expansion overlapped with ~20% of high priority areas. Biodiversity Hotspots had the greatest proportion of their total area under direct threat from all threats, while expansion of low intensity agriculture was found to pose an imminent threat to Wilderness Areas under future agricultural expansion. Our results

  17. Threats from urban expansion, agricultural transformation and forest loss on global conservation priority areas

    PubMed Central

    Moilanen, Atte; Di Minin, Enrico

    2017-01-01

    Including threats in spatial conservation prioritization helps identify areas for conservation actions where biodiversity is at imminent risk of extinction. At the global level, an important limitation when identifying spatial priorities for conservation actions is the lack of information on the spatial distribution of threats. Here, we identify spatial conservation priorities under three prominent threats to biodiversity (residential and commercial development, agricultural expansion, and forest loss), which are primary drivers of habitat loss and threaten the persistence of the highest number of species in the International Union for the Conservation of Nature (IUCN) Red List, and for which spatial data is available. We first explore how global priority areas for the conservation of vertebrate (mammals, birds, and amphibians) species coded in the Red List as vulnerable to each threat differ spatially. We then identify spatial conservation priorities for all species vulnerable to all threats. Finally, we identify the potentially most threatened areas by overlapping the identified priority areas for conservation with maps for each threat. We repeat the same with four other well-known global conservation priority area schemes, namely Key Biodiversity Areas, Biodiversity Hotspots, the global Protected Area Network, and Wilderness Areas. We find that residential and commercial development directly threatens only about 4% of the global top 17% priority areas for species vulnerable under this threat. However, 50% of the high priority areas for species vulnerable to forest loss overlap with areas that have already experienced some forest loss. Agricultural expansion overlapped with ~20% of high priority areas. Biodiversity Hotspots had the greatest proportion of their total area under direct threat from all threats, while expansion of low intensity agriculture was found to pose an imminent threat to Wilderness Areas under future agricultural expansion. Our results

  18. Field ecology, fungal sex and food contamination involving Aspergillus species

    USDA-ARS?s Scientific Manuscript database

    Several species within the genus Aspergillus are capable of producing a myriad of toxic secondary metabolites, with aflatoxin being of most concern. These fungi happen to colonize important agricultural commodities, thereby having the potential to contaminate our food with carcinogenic aflatoxins. P...

  19. Importance of riparian remnants for frog species diversity in a highly fragmented rainforest.

    PubMed

    Rodríguez-Mendoza, Clara; Pineda, Eduardo

    2010-12-23

    Tropical forests undergo continuous transformation to other land uses, resulting in landscapes typified by forest fragments surrounded by anthropogenic habitats. Small forest fragments, specifically strip-shaped remnants flanking streams (referred to as riparian remnants), can be particularly important for the maintenance and conservation of biodiversity within highly fragmented forests. We compared frog species diversity between riparian remnants, other forest fragments and cattle pastures in a tropical landscape in Los Tuxtlas, Mexico. We found similar species richness in the three habitats studied and a similar assemblage structure between riparian remnants and forest fragments, although species composition differed by 50 per cent. Frog abundance was halved in riparian remnants compared with forest fragments, but was twice that found in pastures. Our results suggest that riparian remnants play an important role in maintaining a portion of frog species diversity in a highly fragmented forest, particularly during environmentally stressful (hot and dry) periods. In this regard, however, the role of riparian remnants is complementary, rather than substitutive, with respect to the function of other forest fragments within the fragmented forest.

  20. Integrating Agricultural and Ecological Goals into the Management of Species-Rich Grasslands: Learning from the Flowering Meadows Competition in France

    NASA Astrophysics Data System (ADS)

    Magda, Danièle; de Sainte Marie, Christine; Plantureux, Sylvain; Agreil, Cyril; Amiaud, Bernard; Mestelan, Philippe; Mihout, Sarah

    2015-11-01

    Current agri-environmental schemes for reconciling agricultural production with biodiversity conservation are proving ineffective Europe-wide, increasing interest in results-based schemes (RBSs). We describe here the French "Flowering Meadows" competition, rewarding the "best agroecological balance" in semi-natural grasslands managed by livestock farmers. This competition, which was entered by about a thousand farmers in 50 regional nature parks between 2007 and 2014, explicitly promotes a new style of agri-environmental scheme focusing on an ability to reach the desired outcome rather than adherence to prescriptive management rules. Building on our experience in the design and monitoring of the competition, we argue that the cornerstone of successful RBSs is a collective learning process in which the reconciliation of agriculture and environment is reconsidered in terms of synergistic relationships between agricultural and ecological functioning. We present the interactive, iterative process by which we defined an original method for assessing species-rich grasslands in agroecological terms. This approach was based on the integration of new criteria, such as flexibility, feeding value, and consistency of use, into the assessment of forage production performance and the consideration of biodiversity conservation through its functional role within the grassland ecosystem, rather than simply noting the presence or abundance of species. We describe the adaptation of this methodology on the basis of competition feedback, to bring about a significant shift in the conventional working methods of agronomists and conservationists (including researchers).The potential and efficacy of RBSs for promoting ecologically sound livestock systems are discussed in the concluding remarks, and they relate to the ecological intensification debate.

  1. Railway Embankments as New Habitat for Pollinators in an Agricultural Landscape

    PubMed Central

    Moroń, Dawid; Skórka, Piotr; Lenda, Magdalena; Rożej-Pabijan, Elżbieta; Wantuch, Marta; Kajzer-Bonk, Joanna; Celary, Waldemar; Mielczarek, Łukasz Emil; Tryjanowski, Piotr

    2014-01-01

    Pollinating insect populations, essential for maintaining wild plant diversity and agricultural productivity, rely on (semi)natural habitats. An increasing human population is encroaching upon and deteriorating pollinator habitats. Thus the population persistence of pollinating insects and their associated ecosystem services may depend upon on man-made novel habitats; however, their importance for ecosystem services is barely understood. We tested if man-made infrastructure (railway embankments) in an agricultural landscape establishes novel habitats that support large populations of pollinators (bees, butterflies, hoverflies) when compared to typical habitats for these insects, i.e., semi-natural grasslands. We also identified key environmental factors affecting the species richness and abundance of pollinators on embankments. Species richness and abundance of bees and butterflies were higher for railway embankments than for grasslands. The occurrence of bare (non-vegetated) ground on embankments positively affected bee species richness and abundance, but negatively affected butterfly populations. Species richness and abundance of butterflies positively depended on species richness of native plants on embankments, whereas bee species richness was positively affected by species richness of non-native flowering plants. The density of shrubs on embankments negatively affected the number of bee species and their abundance. Bee and hoverfly species richness were positively related to wood cover in a landscape surrounding embankments. This is the first study showing that railway embankments constitute valuable habitat for the conservation of pollinators in farmland. Specific conservation strategies involving embankments should focus on preventing habitat deterioration due to encroachment of dense shrubs and maintaining grassland vegetation with patches of bare ground. PMID:25054427

  2. 7 CFR 319.37 - Prohibitions and restrictions on importation; disposal of articles refused importation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Prohibitions and restrictions on importation; disposal of articles refused importation. 319.37 Section 319.37 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Nursery Stock, Plants, Root...

  3. 7 CFR 319.37 - Prohibitions and restrictions on importation; disposal of articles refused importation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Prohibitions and restrictions on importation; disposal of articles refused importation. 319.37 Section 319.37 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Nursery Stock, Plants, Root...

  4. Concentrations and speciation of arsenic in New England seaweed species harvested for food and agriculture.

    PubMed

    Taylor, Vivien F; Jackson, Brian P

    2016-11-01

    A survey of arsenic (As) concentrations and speciation was conducted on 10 species of seaweed from commercial harvesters and from collection at two sites in New England. Concentrations of As ranged from 4 to 106 mg/kg, mostly in the form of arsenosugars, with the distribution of arsenosugar analogs varying between taxa. In brown algae, As levels were correlated with phosphate concentrations, and arsenosugar speciation reflected differences in sulfur and phosphate concentrations between taxa. Several samples of the brown algae species Laminaria digitata contained significant levels of inorganic As (2.8-20 mg/kg), the most toxic form of As. A weak acid extraction with microwave heating was compared with a weaker methanol: water extraction method, and found to give slightly higher extraction efficiency with comparable relative concentrations of inorganic As, supporting the use of this faster and simpler extraction method for monitoring. Seaweed is a niche dietary item in the U.S. but its popularity is increasing; it is also used in agriculture and livestock farming which provide potential indirect routes for human exposure. The presence of occasional high concentrations of iAs, as well as the lack of toxicity studies on organic As species, suggest that monitoring of these high As foods is warranted. Copyright © 2016 Elsevier Ltd. All rights reserved.

  5. Assessment of oil content and fatty acid composition variability in two economically important Hibiscus species.

    USDA-ARS?s Scientific Manuscript database

    The Hibiscus genus encompasses more than 300 species, but kenaf (H. cannabinus L.) and roselle (H. sabdariffa L.) are the two most economically important species within the genus. Seeds from these two Hibiscus species contain a relatively high amount of oil with two unusual fatty acids: dihydrosterc...

  6. Biology, taxonomy, and IPM strategies of Bactrocera tau Walker and complex species (Diptera; Tephritidae) in Asia: a comprehensive review.

    PubMed

    Jaleel, Waqar; Lu, Lihua; He, Yurong

    2018-06-02

    Bactrocera flies are the serious pests of fruit, vegetables, and nuts over the world. Bactrocera tau Walker is an economically important pest of agricultural crops. In Asia, approximately 30-40% losses of agricultural products are caused by B. tau infestation every year. In Asia, the B. tau contains a complex of sibling species that called the tau complex. However, the basic studies of B. tau and complex species are very important for integrated management. A comprehensive review of the B. tau and complex species has not been provided elsewhere. So, considering the importance of B. tau and complex species, this study provides the published information on ecology, nomenclature, identification tools, geographical distribution, potential invasion, and IPM tactics of B. tau and complex species, which would be more informative for publication facilitating related to integrated pest management (IPM) strategies of B. tau and complex species. In IPM of B. tau and complex species, the phytochemical and biological controls have not been applied successfully in Asia; there is an urgent need to study and applications of these two mentioned control techniques against the B. tau and complex species in Asia.

  7. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for the...

  8. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for the...

  9. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for the...

  10. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for the...

  11. Agamermis (Nematoda: Mermithidae) Infection in South Carolina Agricultural Pests

    PubMed Central

    Stubbins, Francesca L.; Agudelo, Paula; Reay-Jones, Francis P. F.; Greene, Jeremy K.

    2016-01-01

    Native and invasive stink bugs (Hemiptera: Pentatomidae) and the closely related invasive Megacopta cribraria (Hemiptera: Plataspidae) are agricultural pests in the southeastern United States. Natural enemies, from various phyla, parasitize these pests and contribute to population regulation. We specifically investigated Nematoda infections in pentatomid and plataspid pests in one soybean field in South Carolina in 2015. Nematodes were identified through molecular and morphological methods and assigned to family Mermithidae, genus Agamermis. This study reports mermithid nematode infection in immature M. cribraria for the first time and provides the first mermithid host record for the stink bugs Chinavia hilaris, Euschistus servus, and another Euschistus species, and a grasshopper (Orthoptera: Acrididae) in South Carolina. The same Agamermis species infected all hosts. The broad host range and prevalence suggests that Agamermis may be an important contributor to natural mortality of pentatomid and plataspid pests. Previous mermithid host records for the Pentatomidae and Plataspidae worldwide are summarized. Further work is needed to assess the impact of infection on populations over a broader range of agricultural fields and geographic localities. PMID:28154435

  12. Agamermis (Nematoda: Mermithidae) Infection in South Carolina Agricultural Pests.

    PubMed

    Stubbins, Francesca L; Agudelo, Paula; Reay-Jones, Francis P F; Greene, Jeremy K

    2016-12-01

    Native and invasive stink bugs (Hemiptera: Pentatomidae) and the closely related invasive Megacopta cribraria (Hemiptera: Plataspidae) are agricultural pests in the southeastern United States. Natural enemies, from various phyla, parasitize these pests and contribute to population regulation. We specifically investigated Nematoda infections in pentatomid and plataspid pests in one soybean field in South Carolina in 2015. Nematodes were identified through molecular and morphological methods and assigned to family Mermithidae, genus Agamermis . This study reports mermithid nematode infection in immature M. cribraria for the first time and provides the first mermithid host record for the stink bugs Chinavia hilaris , Euschistus servus , and another Euschistus species, and a grasshopper (Orthoptera: Acrididae) in South Carolina. The same Agamermis species infected all hosts. The broad host range and prevalence suggests that Agamermis may be an important contributor to natural mortality of pentatomid and plataspid pests. Previous mermithid host records for the Pentatomidae and Plataspidae worldwide are summarized. Further work is needed to assess the impact of infection on populations over a broader range of agricultural fields and geographic localities.

  13. Do Farmers Using Conventional and Non-Conventional Systems of Agriculture Have Different Perceptions of the Diversity of Wild Birds? Implications for Conservation.

    PubMed

    Silva-Andrade, Horasa Lima; de Andrade, Luciano Pires; Muniz, Lauana Souza; Telino-Júnior, Wallace Rodrigues; Albuquerque, Ulysses Paulino; Lyra-Neves, Rachel Maria

    2016-01-01

    Farmers' perceptions of birds' interactions with agricultural production systems are fundamental to species conservation efforts. In the present study, we evaluated the perceptions of birds held by farmers who engage in conventional and non-conventional agricultural production processes and the implications of potential differences in these perceptions on species conservation. To accomplish this, data were collected using questionnaires, semi-structured interviews, and other complementary sources of information gathered from 191 farmers in northeastern Brazil. Although some similarities were identified among the farmers in their perceptions and local ecological knowledge (LEK) of birds, differences existed between the conventional and non-conventional farmers in their attitudes toward, conflicts with, and usage of bird species. Compared to the conventional farmers, the non-conventional farmers could identify more bird species, possessed more favorable attitudes toward birds, and engaged in practices more beneficial to the conservation of avifauna. The perceptions that were identified were related to the type of agriculture practiced, and such perceptions may affect the conservation of bird species. Therefore, the adoption of certain agricultural practices has important implications for conservation. Our results indicate the need for investment in public policies, programs and actions that account for farmers' knowledge and perceptions. Such investments will contribute to the development and adoption of practices supporting wild bird conservation in agricultural areas.

  14. Do Farmers Using Conventional and Non-Conventional Systems of Agriculture Have Different Perceptions of the Diversity of Wild Birds? Implications for Conservation

    PubMed Central

    de Andrade, Luciano Pires; Muniz, Lauana Souza; Telino-Júnior, Wallace Rodrigues; Albuquerque, Ulysses Paulino; Lyra-Neves, Rachel Maria

    2016-01-01

    Farmers’ perceptions of birds’ interactions with agricultural production systems are fundamental to species conservation efforts. In the present study, we evaluated the perceptions of birds held by farmers who engage in conventional and non-conventional agricultural production processes and the implications of potential differences in these perceptions on species conservation. To accomplish this, data were collected using questionnaires, semi-structured interviews, and other complementary sources of information gathered from 191 farmers in northeastern Brazil. Although some similarities were identified among the farmers in their perceptions and local ecological knowledge (LEK) of birds, differences existed between the conventional and non-conventional farmers in their attitudes toward, conflicts with, and usage of bird species. Compared to the conventional farmers, the non-conventional farmers could identify more bird species, possessed more favorable attitudes toward birds, and engaged in practices more beneficial to the conservation of avifauna. The perceptions that were identified were related to the type of agriculture practiced, and such perceptions may affect the conservation of bird species. Therefore, the adoption of certain agricultural practices has important implications for conservation. Our results indicate the need for investment in public policies, programs and actions that account for farmers’ knowledge and perceptions. Such investments will contribute to the development and adoption of practices supporting wild bird conservation in agricultural areas. PMID:27243222

  15. Anti-Müllerian Hormone (AMH) and fertility management in agricultural species.

    PubMed

    Mossa, F; Jimenez-Krassel, F; Scheetz, D; Weber-Nielsen, M; Evans, A C O; Ireland, J J

    2017-07-01

    A reliable, easy to assess marker for fertility in agricultural species would be highly desirable and Anti-Müllerian Hormone (AMH) is a promising candidate. This review summarizes recent findings concerning AMH and its role in fertility management, mainly in cattle. It focuses on (1) alterations in circulating AMH concentrations from birth to puberty and during estrous cycles; (2) correlation of circulating AMH concentrations with ovarian follicle numbers and ovarian reserve; (3) factors that impact circulating AMH concentrations; (4) use of AMH as a predictor of fertility. Circulating AMH concentrations can be easily and reliably measured with a single blood sample in adult cattle because AMH varies minimally during the estrous cycle and is repeatable across multiple cycles. Circulating AMH concentrations are positively associated with several measures of fertility. Dairy heifers with low compared with higher AMH concentrations subsequently had lower pregnancy rates, higher probability of being culled after birth of their first calf and shorter herd longevity. Also, AMH is predictive of response to superovulation in cattle and sheep. Several factors contribute to the variability in AMH concentrations among individuals; for example, beef cattle have higher AMH than dairy cattle. Nutritional imbalances, disease and endocrine disruptors during fetal life may negatively program the size of the ovarian reserve and consequently serum AMH concentrations and potential fertility in adulthood. We conclude that AMH may be a predictor of fertility and herd longevity in cattle, whereas in sheep and other farm species, the potential association between AMH and reproductive performance remains largely unexplored.Free Italian abstract: An Italian translation of this abstract is freely available at http://www.reproduction-online.org/content/154/1/R1/suppl/DC1. © 2017 Society for Reproduction and Fertility.

  16. Carnivore use of avocado orchards across an agricultural-wildland gradient

    USGS Publications Warehouse

    Nogeire, Theresa M.; Davis, Frank W.; Duggan, Jennifer M.; Crooks, Kevin R.; Boydston, Erin E.

    2013-01-01

    Wide-ranging species cannot persist in reserves alone. Consequently, there is growing interest in the conservation value of agricultural lands that separate or buffer natural areas. The value of agricultural lands for wildlife habitat and connectivity varies as a function of the crop type and landscape context, and quantifying these differences will improve our ability to manage these lands more effectively for animals. In southern California, many species are present in avocado orchards, including mammalian carnivores. We examined occupancy of avocado orchards by mammalian carnivores across agricultural-wildland gradients in southern California with motion-activated cameras. More carnivore species were detected with cameras in orchards than in wildland sites, and for bobcats and gray foxes, orchards were associated with higher occupancy rates. Our results demonstrate that agricultural lands have potential to contribute to conservation by providing habitat or facilitating landscape connectivity.

  17. The Importance of the Regional Species Pool, Ecological Species Traits and Local Habitat Conditions for the Colonization of Restored River Reaches by Fish

    PubMed Central

    Stoll, Stefan; Kail, Jochem; Lorenz, Armin W.; Sundermann, Andrea; Haase, Peter

    2014-01-01

    It is commonly assumed that the colonization of restored river reaches by fish depends on the regional species pools; however, quantifications of the relationship between the composition of the regional species pool and restoration outcome are lacking. We analyzed data from 18 German river restoration projects and adjacent river reaches constituting the regional species pools of the restored reaches. We found that the ability of statistical models to describe the fish assemblages established in the restored reaches was greater when these models were based on ‘biotic’ variables relating to the regional species pool and the ecological traits of species rather than on ‘abiotic’ variables relating to the hydromorphological habitat structure of the restored habitats and descriptors of the restoration projects. For species presence in restored reaches, ‘biotic’ variables explained 34% of variability, with the occurrence rate of a species in the regional species pool being the most important variable, while ’abiotic’ variables explained only the negligible amount of 2% of variability. For fish density in restored reaches, about twice the amount of variability was explained by ‘biotic’ (38%) compared to ‘abiotic’ (21%) variables, with species density in the regional species pool being most important. These results indicate that the colonization of restored river reaches by fish is largely determined by the assemblages in the surrounding species pool. Knowledge of species presence and abundance in the regional species pool can be used to estimate the likelihood of fish species becoming established in restored reaches. PMID:24404187

  18. A polyphasic approach for characterization of a collection of cereal isolates of the Fusarium incarnatum-equiseti species complex

    USDA-ARS?s Scientific Manuscript database

    DNA-based phylogenetic analyses have resolved the fungal genus Fusarium into multiple species complexes. The F. incarnatum-equiseti species complex (FIESC) includes fusaria associated with several diseases of agriculturally important crops, including cereals. Although members of FIESC are considered...

  19. Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex

    USDA-ARS?s Scientific Manuscript database

    Nematodes within the Xiphinema americanum species complex are economically important because they vector nepoviruses which cause considerable damage to a variety of agricultural crops. The taxonomy of X. americanum is controversial, with the number of putative species being the subject of debate. Ac...

  20. A comparison of the herbicide tolerances of rare and common plants in an agricultural landscape.

    PubMed

    Egan, J Franklin; Graham, Ian M; Mortensen, David A

    2014-03-01

    Declining plant biodiversity in agroecosystems has often been attributed to escalating use of chemical herbicides, but other changes in farming systems, including the clearing of seminatural habitat fragments, confound the influence of herbicides. The present study introduces a new approach to evaluate the impacts of herbicide pollution on plant communities at landscape or regional scales. If herbicides are in fact a key factor shaping agricultural plant diversity, one would expect to see the signal of past herbicide impacts in the current plant community composition of an intensively farmed region, with common, successful species more tolerant to widely used herbicides than rare or declining species. Data from an extensive field survey of plant diversity in Lancaster County, Pennsylvania, USA, were compared with herbicide bioassay experiments in a greenhouse to test the hypothesis that common species possess higher herbicide tolerances than rare species. Five congeneric pairs of rare and common species were treated with 3 commonly used herbicide modes of action in bioassay experiments, and few significant differences were found in the tolerances of rare species relative to common species. These preliminary results suggest that other factors beyond herbicide exposure may be more important in shaping the distribution and abundance of plant species diversity across an agricultural landscape. © 2014 SETAC.

  1. Y2K and International Agricultural Transportation: Analysis of Export Markets, Import Suppliers, and Major Food Aid Recipient Countries

    DOT National Transportation Integrated Search

    1999-09-01

    USDA Y2K information assessment of international food transportation modes in : selected foreign countries. The assessment targeted 9 of the top 10 markets for : U.S. Agricultural exports and 7 of the top 8 suppliers of imported food products : to th...

  2. Molecular characterization of Fasciola species isolated from imported sheep in Taif region (Saudi Arabia).

    PubMed

    Shalaby, I; Gherbawy, Y; Banaja, A

    2013-03-01

    Accurate identification of Fasciola species, followed by biological and ecological characterization, is important with concern to the planning for field control. Because there are many variations in morphological characteristics, exact distinguishing of Fasciola species is usually difficult by simple traditional microscopic measurements and, therefore, the morphometric characterization may be insufficient for the species identification. Hence, the present work was proposed to collect 100 liver samples from 100 imported sheep from Sudan from slaughterhouses in Taif region. The samples were firstly examined macroscopically and microscopically to ensure the presence or absence of infection. The collected worms were subjected for RAPD-PCR analysis using different primers and ITS1 sequences for accurate identification. Using RAPD-PCR analysis, two primers were selected to amplify the DNA of each Fasciola. The results show that the amplification fragments were between 500 and 1500 bp and, the use of random genetic markers allowed to discriminate among the different collected species. Using Internal transcribed spacer region (ITS) sequencing, the imported sheep in Taif region consisted of 630 bps including complete ITS1, partial 18S and 5.8S and had 5 variable nucleotide positions. This is the first demonstration of the existence of both F. hepatica, F. gigantica and hybrid and/or introgressed populations of liver flukes bearing genetic material from both F. hepatica and F. gigantica in the imported sheep in Saudi Arabia by a genetic approach.

  3. Soil and geography are more important determinants of indigenous arbuscular mycorrhizal communities than management practices in Swiss agricultural soils.

    PubMed

    Jansa, Jan; Erb, Angela; Oberholzer, Hans-Rudolf; Smilauer, Petr; Egli, Simon

    2014-04-01

    Arbuscular mycorrhizal fungi (AMF) are ubiquitous soil fungi, forming mutualistic symbiosis with a majority of terrestrial plant species. They are abundant in nearly all soils, less diverse than soil prokaryotes and other intensively studied soil organisms and thus are promising candidates for universal indicators of land management legacies and soil quality degradation. However, insufficient data on how the composition of indigenous AMF varies along soil and landscape gradients have hampered the definition of baselines and effect thresholds to date. Here, indigenous AMF communities in 154 agricultural soils collected across Switzerland were profiled by quantitative real-time PCR with taxon-specific markers for six widespread AMF species. To identify the key determinants of AMF community composition, the profiles were related to soil properties, land management and site geography. Our results indicate a number of well-supported dependencies between abundances of certain AMF taxa and soil properties such as pH, soil fertility and texture, and a surprising lack of effect of available soil phosphorus on the AMF community profiles. Site geography, especially the altitude and large geographical distance, strongly affected AMF communities. Unexpected was the apparent lack of a strong land management effect on the AMF communities as compared to the other predictors, which could be due to the rarity of highly intensive and unsustainable land management in Swiss agriculture. In spite of the extensive coverage of large geographical and soil gradients, we did not identify any taxon suitable as an indicator of land use among the six taxa we studied. © 2014 John Wiley & Sons Ltd.

  4. Patterns of among- and within-species variation in heterospecific pollen receipt: The importance of ecological generalization.

    PubMed

    Arceo-Gómez, Gerardo; Abdala-Roberts, Luis; Jankowiak, Anneka; Kohler, Clare; Meindl, George A; Navarro-Fernández, Carmen M; Parra-Tabla, Víctor; Ashman, Tia-Lynn; Alonso, Conchita

    2016-03-01

    Coflowering plants are at risk for receiving pollen from heterospecifics as well as conspecifics, yet evidence shows wide variation in the degree that heterospecific pollen transfer occurs. Evaluation of patterns and correlates of among- and within-species variation in heterospecific pollen (HP) receipt is key to understanding its importance for floral evolution and species coexistence; however, the rarity of deeply sampled multispecies comparisons has precluded such an evaluation. We evaluated patterns of among- and within-species variation in HP load size and diversity in 19 species across three distinct plant communities. We assessed the importance of phenotypic specialization (floral phenotype), ecological specialization (contemporary visitor assemblage), and conspecific flower density as determinants of among-species variation. We present hypotheses for different accrual patterns of HP within species based on the evenness and quality of floral visitors and evaluated these by characterizing the relationship between conspecific pollen (CP) and HP receipt. We found that within-species variation in HP receipt was greater than among-species and among-communities variation. Among species, ecological generalization emerged as the strongest driver of variation in HP receipt irrespective of phenotypic specialization. Within-species variation in HP load size and diversity was predicted most often from two CP-HP relationships (linear or exponentially decreasing), suggesting that two distinct types of plant-pollinator interactions prevail. Our results give important insights into the potential drivers of among- and within-species variation in HP receipt. They also highlight the value of explorations of patterns at the intraspecific level, which can ultimately shed light on plant-pollinator-mediated selection in diverse plant communities. © 2016 Botanical Society of America.

  5. Pollen Deposition Is More Important than Species Richness for Seed Set in Luffa Gourd.

    PubMed

    Ali, M; Saeed, S; Sajjad, A

    2016-10-01

    In the context of global biodiversity decline, it is imperative to understand the different aspects of bee communities for sustaining the vital ecosystem service of pollination. Bee species can be assigned to functional groups (average difference among species in functionally related traits) on the basis of complementarity (trait variations exhibited by individual organisms) in their behavior but is not yet known which functional group trait is most important for seed set. In this study, first, the functional groups of bees were made based on their five selected traits (pollen deposition, visitation rate, stay time, visiting time of the day, body size) and then related to the seed set of obligate cross-pollinated Luffa gourd (Luffa aegyptiaca). We found that bee diversity and abundance differed significantly among the studied plots, but only the bee species richness was positively related to the seed set. Functional group diversity in terms of pollen deposition explained even more of the variance in seed set (r 2  = 0.74) than did the species richness (r 2  = 0.53) making it the most important trait of bee species for predicting the crop reproductive success.

  6. Horizontal and vertical species turnover in tropical birds in habitats with differing land use.

    PubMed

    Sreekar, Rachakonda; Corlett, Richard T; Dayananda, Salindra; Goodale, Uromi Manage; Kilpatrick, Adam; Kotagama, Sarath W; Koh, Lian Pin; Goodale, Eben

    2017-05-01

    Large tracts of tropical rainforests are being converted into intensive agricultural lands. Such anthropogenic disturbances are known to reduce species turnover across horizontal distances. But it is not known if they can also reduce species turnover across vertical distances (elevation), which have steeper climatic differences. We measured turnover in birds across horizontal and vertical sampling transects in three land-use types of Sri Lanka: protected forest, reserve buffer and intensive-agriculture, from 90 to 2100 m a.s.l. Bird turnover rates across horizontal distances were similar across all habitats, and much less than vertical turnover rates. Vertical turnover rates were not similar across habitats. Forest had higher turnover rates than the other two habitats for all bird species. Buffer and intensive-agriculture had similar turnover rates, even though buffer habitats were situated at the forest edge. Therefore, our results demonstrate the crucial importance of conserving primary forest across the full elevational range available. © 2017 The Author(s).

  7. Agricultural By-Products Turned into Important Materials with Adsorptive Properties

    USDA-ARS?s Scientific Manuscript database

    This presentation will summarize the use of agricultural by-products (e.g., animal manure and plant waste) as starting materials to adsorb environmental contaminants such as mercury from air, ammonia from air, metal ions from water, and chlorinated organics from water. The results show that the mat...

  8. Standardization of a two-step real-time polymerase chain reaction based method for species-specific detection of medically important Aspergillus species.

    PubMed

    Das, P; Pandey, P; Harishankar, A; Chandy, M; Bhattacharya, S; Chakrabarti, A

    2017-01-01

    Standardization of Aspergillus polymerase chain reaction (PCR) poses two technical challenges (a) standardization of DNA extraction, (b) optimization of PCR against various medically important Aspergillus species. Many cases of aspergillosis go undiagnosed because of relative insensitivity of conventional diagnostic methods such as microscopy, culture or antigen detection. The present study is an attempt to standardize real-time PCR assay for rapid sensitive and specific detection of Aspergillus DNA in EDTA whole blood. Three nucleic acid extraction protocols were compared and a two-step real-time PCR assay was developed and validated following the recommendations of the European Aspergillus PCR Initiative in our setup. In the first PCR step (pan-Aspergillus PCR), the target was 28S rDNA gene, whereas in the second step, species specific PCR the targets were beta-tubulin (for Aspergillus fumigatus, Aspergillus flavus, Aspergillus terreus), gene and calmodulin gene (for Aspergillus niger). Species specific identification of four medically important Aspergillus species, namely, A. fumigatus, A. flavus, A. niger and A. terreus were achieved by this PCR. Specificity of the PCR was tested against 34 different DNA source including bacteria, virus, yeast, other Aspergillus sp., other fungal species and for human DNA and had no false-positive reactions. The analytical sensitivity of the PCR was found to be 102 CFU/ml. The present protocol of two-step real-time PCR assays for genus- and species-specific identification for commonly isolated species in whole blood for diagnosis of invasive Aspergillus infections offers a rapid, sensitive and specific assay option and requires clinical validation at multiple centers.

  9. Molecular Detection and Species-Specific Identification of Medically Important Aspergillus Species by Real-Time PCR in Experimental Invasive Pulmonary Aspergillosis ▿

    PubMed Central

    Walsh, Thomas J.; Wissel, Mark C.; Grantham, Kevin J.; Petraitiene, Ruta; Petraitis, Vidmantas; Kasai, Miki; Francesconi, Andrea; Cotton, Margaret P.; Hughes, Johanna E.; Greene, Lora; Bacher, John D.; Manna, Pradip; Salomoni, Martin; Kleiboeker, Steven B.; Reddy, Sushruth K.

    2011-01-01

    Diagnosis of invasive pulmonary aspergillosis (IPA) remains a major challenge to clinical microbiology laboratories. We developed rapid and sensitive quantitative PCR (qPCR) assays for genus- and species-specific identification of Aspergillus infections by use of TaqMan technology. In order to validate these assays and understand their potential diagnostic utility, we then performed a blinded study of bronchoalveolar lavage (BAL) fluid specimens from well-characterized models of IPA with the four medically important species. A set of real-time qPCR primers and probes was developed by utilizing unique ITS1 regions for genus- and species-specific detection of the four most common medically important Aspergillus species (Aspergillus fumigatus, A. flavus, A. niger, and A. terreus). Pan-Aspergillus and species-specific qPCRs with BAL fluid were more sensitive than culture for detection of IPA caused by A. fumigatus in untreated (P < 0.0007) and treated (P ≤ 0.008) animals, respectively. For infections caused by A. terreus and A. niger, culture and PCR amplification from BAL fluid yielded similar sensitivities for untreated and treated animals. Pan-Aspergillus PCR was more sensitive than culture for detection of A. flavus in treated animals (P = 0.002). BAL fluid pan-Aspergillus and species-specific PCRs were comparable in sensitivity to BAL fluid galactomannan (GM) assay. The copy numbers from the qPCR assays correlated with quantitative cultures to determine the pulmonary residual fungal burdens in lung tissue. Pan-Aspergillus and species-specific qPCR assays may improve the rapid and accurate identification of IPA in immunocompromised patients. PMID:21976757

  10. Diel flight behaviour and dispersal patterns of aquatic Coleoptera and Heteroptera species with special emphasis on the importance of seasons

    NASA Astrophysics Data System (ADS)

    Csabai, Zoltán; Kálmán, Zoltán; Szivák, Ildikó; Boda, Pál

    2012-09-01

    Dispersal flight is the most important and almost the only way for primary aquatic insects to find new water habitats. During a 30-week-long project, we monitored the flight dispersal behaviour of aquatic beetles and bugs with using highly and horizontally polarizing agricultural black plastic sheets laid onto the ground. Based on the flight data of more than 45,000 individuals and 92 species, we explored and described eight different diel flight activity patterns. We found that seven of eight dispersal patterns are consistent with the previous knowledge, while three conspicuous mass dispersal periods can be identified as in the mid morning and/or around noon and/or at nightfall. As an exception, we found a `daytime' pattern occurred exclusively in spring, in which mass dispersal can be seen from mid morning to late afternoon. In contrast to previous studies, we emphasize here that the seasonality has to be considered in evaluation of the diurnal flight activity. According to the seasons, a `three code sign' was proposed to indicate the diel dispersal flight behaviour of a species for a year. Most of the species utilize different diel activity patterns in different seasons. In spring, the daytime pattern was the preferred type, but in summer and autumn, the evening types were the most popular patterns. We stated that the seasonal change of air temperature has a crucial role in that a pattern could be manifested in a given season or not and brings a need to change the diel dispersal pattern among seasons.

  11. Factors affecting plant species composition of hedgerows: relative importance and hierarchy

    NASA Astrophysics Data System (ADS)

    Deckers, Bart; Hermy, Martin; Muys, Bart

    2004-07-01

    Although there has been a clear quantitative and qualitative decline in traditional hedgerow network landscapes during last century, hedgerows are crucial for the conservation of rural biodiversity, functioning as an important habitat, refuge and corridor for numerous species. To safeguard this conservation function, insight in the basic organizing principles of hedgerow plant communities is needed. The vegetation composition of 511 individual hedgerows situated within an ancient hedgerow network landscape in Flanders, Belgium was recorded, in combination with a wide range of explanatory variables, including a selection of spatial variables. Non-parametric statistics in combination with multivariate data analysis techniques were used to study the effect of individual explanatory variables. Next, variables were grouped in five distinct subsets and the relative importance of these variable groups was assessed by two related variation partitioning techniques, partial regression and partial canonical correspondence analysis, taking into account explicitly the existence of intercorrelations between variables of different factor groups. Most explanatory variables affected significantly hedgerow species richness and composition. Multivariate analysis showed that, besides adjacent land use, hedgerow management, soil conditions, hedgerow type and origin, the role of other factors such as hedge dimensions, intactness, etc., could certainly not be neglected. Furthermore, both methods revealed the same overall ranking of the five distinct factor groups. Besides a predominant impact of abiotic environmental conditions, it was found that management variables and structural aspects have a relatively larger influence on the distribution of plant species in hedgerows than their historical background or spatial configuration.

  12. [Listeriosis in agricultural animals (problems of the epizootiology, pathological anatomy and pathogenesis)].

    PubMed

    Urbanovich, P P

    1975-01-01

    Data are presented on the main problems of epizootology, pathological anatomy and pathogenesis of listeriosis of agricultural animals. It was shown that under natural conditions all species of agricultural animals are susceptible to the condition but ship are affected most often. Various clinico-anatomic forms of the disease are considered: nervous, septicemic, metrogenic, mixed, subclinical and latent. Domestic animals were observed to suffer predominantly from the nervous form of the disease. Basing on literature reports and his own findings, the author elucidates with greater detail problems of pathomorphology and pathogenesis of the nervous form of listeriosis and shows the importance of the neurogenic pathway in the development of listerious encephalomyelitis.

  13. [Wildlife damage mitigation in agricultural crops in a Bolivian montane forest].

    PubMed

    Perez, Eddy; Pacheco, Luis F

    2014-12-01

    Wildlife is often blamed for causing damage to human activities, including agricultural practices and the result may be a conflict between human interests and species conservation. A formal assessment of the magnitude of damage is necessary to adequately conduct management practices and an assessment of the efficiency of different management practices is necessary to enable managers to mitigate the conflict with rural people. This study was carried out to evaluate the effectiveness of agricultural management practices and controlled hunting in reducing damage to subsistence annual crops at the Cotapata National Park and Natural Area of Integrated Management. The design included seven fields with modified agricultural practices, four fields subjected to control hunting, and five fields held as controls. We registered cultivar type, density, frequency of visiting species to the field, crops lost to wildlife, species responsible for damage, and crop biomass. Most frequent species in the fields were Dasyprocta punctata and Dasypus novemcinctus. Hunted plots were visited 1.6 times more frequently than agriculturally managed plots. Crop lost to wildlife averaged 7.28% at agriculturally managed plots, 4.59% in plots subjected to hunting, and 27.61% in control plots. Species mainly responsible for damage were Pecari tajacu, D. punctata, and Sapajus apella. We concluded that both management strategies were effective to reduce damage by >50% as compared to unmanaged crop plots.

  14. EFFECTS OF ALTERED HABITATS ON COMMERCIALLY IMPORTANT SPECIES OF THE NORTHERN GULF OF MEXICO

    EPA Science Inventory

    This research emphasizes the role of critical estuarine habitats to species that provide an ecosystem service, namely those fish and shellfish of economic importance. Vegetated habitats are examined for their capacity to provide and sustain commercially important shrimp, oyster, ...

  15. Amphibian malformations and body condition across an agricultural landscape of northwest Argentina.

    PubMed

    Guerra, Cecilia; Aráoz, Ezequiel

    2016-09-26

    Agricultural landscapes support large amphibian populations because they provide habitat for many species, although agriculture affects amphibians through various mechanisms. Pollution with agrochemicals is the major threat to amphibian populations after habitat loss, as chemicals alter the ecophysiology of amphibians, putting their health and survival at risk. We aimed to assess the effect of different environments, sites, width of forest buffers and sampling years on the health of amphibians, which was estimated through the prevalence of malformations and body condition. During 3 yr of pitfall trapping, we captured 4491 amphibians. The prevalence of malformations was higher in the croplands than in the forests, while the body condition was better within forests. The prevalence of malformations was higher in the narrower forest site than in the wider forest site. The prevalence of malformations and the body condition were higher in the third year. The prevalence of malformations differed by species. We found 11 types of malformation, which mainly affected limbs and were unilateral or bilaterally asymmetrical. Our results showed that the prevalence of malformations and body condition reflect different aspects of the health of amphibians and that forest individuals are healthier than those from croplands. The results also highlight the importance of spatial configuration besides the conservation of natural habitats to preserve healthy amphibians in agricultural landscapes. The types of malformation that we found suggest that agrochemicals could be an important cause of malformations.

  16. Study of agricultural waste treatment in China and Russia-based on the agriculture environment sustainable development

    NASA Astrophysics Data System (ADS)

    Chernyaeva, Victoria A.; Teng, Xiuyi; Sergio

    2017-06-01

    China and Russia are both agriculture countries, agricultural environment sustainable development is very important for them. The paper studies three main agricultural wastes: straw, organic waste and plastic waste, and analyzes their treatments with the view of agricultural sustainable development.

  17. PCR-RFLP on β-tubulin gene for rapid identification of the most clinically important species of Aspergillus.

    PubMed

    Nasri, Tuba; Hedayati, Mohammad Taghi; Abastabar, Mahdi; Pasqualotto, Alessandro C; Armaki, Mojtaba Taghizadeh; Hoseinnejad, Akbar; Nabili, Mojtaba

    2015-10-01

    Aspergillus species are important agents of life-threatening infections in immunosuppressed patients. Proper speciation in the Aspergilli has been justified based on varied fungal virulence, clinical presentations, and antifungal resistance. Accurate identification of Aspergillus species usually relies on fungal DNA sequencing but this requires expensive equipment that is not available in most clinical laboratories. We developed and validated a discriminative low-cost PCR-based test to discriminate Aspergillus isolates at the species level. The Beta tubulin gene of various reference strains of Aspergillus species was amplified using the universal fungal primers Bt2a and Bt2b. The PCR products were subjected to digestion with a single restriction enzyme AlwI. All Aspergillus isolates were subjected to DNA sequencing for final species characterization. The PCR-RFLP test generated unique patterns for six clinically important Aspergillus species, including Aspergillus flavus, Aspergillus fumigatus, Aspergillus nidulans, Aspergillus terreus, Aspergillus clavatus and Aspergillus nidulans. The one-enzyme PCR-RFLP on Beta tubulin gene designed in this study is a low-cost tool for the reliable and rapid differentiation of the clinically important Aspergillus species. Copyright © 2015 Elsevier B.V. All rights reserved.

  18. Climate change and habitat conversion favour the same species.

    PubMed

    Frishkoff, Luke O; Karp, Daniel S; Flanders, Jon R; Zook, Jim; Hadly, Elizabeth A; Daily, Gretchen C; M'Gonigle, Leithen K

    2016-09-01

    Land-use change and climate change are driving a global biodiversity crisis. Yet, how species' responses to climate change are correlated with their responses to land-use change is poorly understood. Here, we assess the linkages between climate and land-use change on birds in Neotropical forest and agriculture. Across > 300 species, we show that affiliation with drier climates is associated with an ability to persist in and colonise agriculture. Further, species shift their habitat use along a precipitation gradient: species prefer forest in drier regions, but use agriculture more in wetter zones. Finally, forest-dependent species that avoid agriculture are most likely to experience decreases in habitable range size if current drying trends in the Neotropics continue as predicted. This linkage suggests a synergy between the primary drivers of biodiversity loss. Because they favour the same species, climate and land-use change will likely homogenise biodiversity more severely than otherwise anticipated. © 2016 John Wiley & Sons Ltd/CNRS.

  19. Agricultural Pesticides: An Instructional Unit for Teachers of Adult Vocational Education in Agriculture.

    ERIC Educational Resources Information Center

    Harrison, Kenneth M.; And Others

    This unit was developed as a guide for use by Kentucky teachers in planning and conducting young farmer/adult farmer classes in the use of agricultural pesticides. The unit contains seven lessons covering the following topics: understanding the importance of agricultural pesticides; using and handling agricultural pesticides safely; developing a…

  20. Comparative study on the gut microbiotas of four economically important Asian carp species.

    PubMed

    Li, Xinghao; Yu, Yuhe; Li, Chang; Yan, Qingyun

    2018-05-07

    Gut microbiota of four economically important Asian carp species (silver carp, Hypophthalmichthys molitrix; bighead carp, Hypophthalmichthys nobilis; grass carp, Ctenopharyngodon idella; common carp, Cyprinus carpio) were compared using 16S rRNA gene pyrosequencing. Analysis of more than 590,000 quality-filtered sequences obtained from the foregut, midgut and hindgut of these four carp species revealed high microbial diversity among the samples. The foregut samples of grass carp exhibited more than 1,600 operational taxonomy units (OTUs) and the highest alpha-diversity index, followed by the silver carp foregut and midgut. Proteobacteria, Firmicutes, Bacteroidetes and Fusobacteria were the predominant phyla regardless of fish species or gut type. Pairwise (weighted) UniFrac distance-based permutational multivariate analysis of variance with fish species as a factor produced significant association (P<0.01). The gut microbiotas of all four carp species harbored saccharolytic or proteolytic microbes, likely in response to the differences in their feeding habits. In addition, extensive variations were also observed even within the same fish species. Our results indicate that the gut microbiotas of Asian carp depend on the exact species, even when the different species were cohabiting in the same environment. This study provides some new insights into developing commercial fish feeds and improving existing aquaculture strategies.

  1. A Study of Agricultural Job Tasks and Implications for Curriculum Development in Agriculture and Agriculture Related Occupations.

    ERIC Educational Resources Information Center

    Hawaii State Dept. of Education, Honolulu. Office of Instructional Services.

    The study, based on a survey of agricultural industry in Hawaii, was conducted to obtain current job task information to be used as the basis for curriculum improvement in agricultural technology and ornamental horticulture. It determines the kinds and frequency of job skills and the importance of the accompanying knowledge required. A checklist…

  2. Assessing elements of an extended evolutionary synthesis for plant domestication and agricultural origin research

    PubMed Central

    Piperno, Dolores R.

    2017-01-01

    The development of agricultural societies, one of the most transformative events in human and ecological history, was made possible by plant and animal domestication. Plant domestication began 12,000–10,000 y ago in a number of major world areas, including the New World tropics, Southwest Asia, and China, during a period of profound global environmental perturbations as the Pleistocene epoch ended and transitioned into the Holocene. Domestication is at its heart an evolutionary process, and for many prehistorians evolutionary theory has been foundational in investigating agricultural origins. Similarly, geneticists working largely with modern crops and their living wild progenitors have documented some of the mechanisms that underwrote phenotypic transformations from wild to domesticated species. Ever-improving analytic methods for retrieval of empirical data from archaeological sites, together with advances in genetic, genomic, epigenetic, and experimental research on living crop plants and wild progenitors, suggest that three fields of study currently little applied to plant domestication processes may be necessary to understand these transformations across a range of species important in early prehistoric agriculture. These fields are phenotypic (developmental) plasticity, niche construction theory, and epigenetics with transgenerational epigenetic inheritance. All are central in a controversy about whether an Extended Evolutionary Synthesis is needed to reconceptualize how evolutionary change occurs. An exploration of their present and potential utility in domestication study shows that all three fields have considerable promise in elucidating important issues in plant domestication and in agricultural origin and dispersal research and should be increasingly applied to these issues. PMID:28576881

  3. The challenge of accurately documenting bee species richness in agroecosystems: bee diversity in eastern apple orchards

    PubMed Central

    Russo, Laura; Park, Mia; Gibbs, Jason; Danforth, Bryan

    2015-01-01

    Bees are important pollinators of agricultural crops, and bee diversity has been shown to be closely associated with pollination, a valuable ecosystem service. Higher functional diversity and species richness of bees have been shown to lead to higher crop yield. Bees simultaneously represent a mega-diverse taxon that is extremely challenging to sample thoroughly and an important group to understand because of pollination services. We sampled bees visiting apple blossoms in 28 orchards over 6 years. We used species rarefaction analyses to test for the completeness of sampling and the relationship between species richness and sampling effort, orchard size, and percent agriculture in the surrounding landscape. We performed more than 190 h of sampling, collecting 11,219 specimens representing 104 species. Despite the sampling intensity, we captured <75% of expected species richness at more than half of the sites. For most of these, the variation in bee community composition between years was greater than among sites. Species richness was influenced by percent agriculture, orchard size, and sampling effort, but we found no factors explaining the difference between observed and expected species richness. Competition between honeybees and wild bees did not appear to be a factor, as we found no correlation between honeybee and wild bee abundance. Our study shows that the pollinator fauna of agroecosystems can be diverse and challenging to thoroughly sample. We demonstrate that there is high temporal variation in community composition and that sites vary widely in the sampling effort required to fully describe their diversity. In order to maximize pollination services provided by wild bee species, we must first accurately estimate species richness. For researchers interested in providing this estimate, we recommend multiyear studies and rarefaction analyses to quantify the gap between observed and expected species richness. PMID:26380684

  4. Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices.

    PubMed

    Fritz, Megan L; DeYonke, Alexandra M; Papanicolaou, Alexie; Micinski, Stephen; Westbrook, John; Gould, Fred

    2018-01-01

    Adaptation to human-induced environmental change has the potential to profoundly influence the genomic architecture of affected species. This is particularly true in agricultural ecosystems, where anthropogenic selection pressure is strong. Heliothis virescens primarily feeds on cotton in its larval stages, and US populations have been declining since the widespread planting of transgenic cotton, which endogenously expresses proteins derived from Bacillus thuringiensis (Bt). No physiological adaptation to Bt toxin has been found in the field, so adaptation in this altered environment could involve (i) shifts in host plant selection mechanisms to avoid cotton, (ii) changes in detoxification mechanisms required for cotton-feeding vs. feeding on other hosts or (iii) loss of resistance to previously used management practices including insecticides. Here, we begin to address whether such changes occurred in H. virescens populations between 1997 and 2012, as Bt-cotton cultivation spread through the agricultural landscape. For our study, we produced an H. virescens genome assembly and used this in concert with a ddRAD-seq-enabled genome scan to identify loci with significant allele frequency changes over the 15-year period. Genetic changes at a previously described H. virescens insecticide target of selection were detectable in our genome scan and increased our confidence in this methodology. Additional loci were also detected as being under selection, and we quantified the selection strength required to elicit observed allele frequency changes at each locus. Potential contributions of genes near loci under selection to adaptive phenotypes in the H. virescens cotton system are discussed. © 2017 John Wiley & Sons Ltd.

  5. [Towards a renewable and sustainable agriculture. Biological agriculture: from marginal vanguard to spearhead of the agriculture of the future].

    PubMed

    Diek Van Mansvelt, J

    1992-01-01

    This work seeks to demonstrate how different types of organic agriculture can meet the need for renewable and sustainable agriculture, rural development, and management of the land and water resources. An obstacle to the spread of organic agriculture is the widespread perception that without intensive factors of production, demographic growth will necessarily outstrip the available food resources. Calculation of economic costs and benefits at present carries greater weight in planning than do soil erosion, deforestation, extinction of species, disappearance of habitats, and similar environmental damage. The different types of organic agriculture do not follow rigid rules and are not defined solely by the nonuse of nitrogenous fertilizers and pesticides. One of the main principles or organic agriculture is to respect local soil and climatic conditions. Self-sufficiency regarding external factors of production and an emphasis on recycling and optimal use of natural resources were concept ahead of their time when they initially were introduced in the 1920s. The specialization which restructured agriculture over the past century has seriously damaged the system of mixed agriculture and the chain of food production. The solution will be to seek for each region an appropriate balance linking animals and agricultural production in an organic process. The objective of organic agriculture, also known as autonomous ecosystem management, is to preserve as far as possible the balance between needs for food and fiber on the 1 hand and the potential of local ecosystems on the other. General principles of organic agriculture include mixed exploitation in which both plants and animals have specific functions in the context of their local soil and climatic characteristics. Different types of crop rotation are practiced to optimize mutual interactions between crops, and the varied organic cycles are also optimized within the framework of anorganic management in accord with nature

  6. Transgenic Crops: Implications for Biodiversity and Sustainable Agriculture

    ERIC Educational Resources Information Center

    Garcia, Maria Alice; Altieri, Miguel A.

    2005-01-01

    The potential for genetically modified (GM) crops to threaten biodiversity conservation and sustainable agriculture is substantial. Megadiverse countries and centers of origin and/or diversity of crop species are particularly vulnerable regions. The future of sustainable agriculture may be irreversibly jeopardized by contamination of in situ…

  7. Determinants and impacts of public agricultural research in Japan: Product level evidence on agricultural Kosetsushi

    NASA Astrophysics Data System (ADS)

    Fukugawa, Nobuya

    2017-12-01

    The public sector is an important source of agricultural research as the agricultural sector in many countries consists of a number of individual farmers who have difficulty in bearing the cost of research and development. Public institutes for testing and research called Kosetsushi help agriculture and manufacturing improve labor productivity through technology transfer activities, whereby constituting an important component of regional innovation systems in Japan. This study establishes panel data of agricultural Kosetsushi and examines whether their research activities are responsive to local needs and which type of research effort is conducive to the promotion of agricultural product innovations. Estimation results reveal variations across plants in the impacts of agricultural clusters on research on the plant conducted by Kosetsushi located in the cluster. A positive impact is observed only for vegetable while negative or statistically insignificant relationships are found for rice, fruit, and flower. The impact of research on plant breeding on agricultural product innovations also varies across plants. Policy implications of the major findings are discussed.

  8. 7 CFR 201.38 - Importations.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Importations. 201.38 Section 201.38 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Standards, Inspections, Marketing Practices), DEPARTMENT OF AGRICULTURE (CONTINUED) FEDERAL SEED ACT FEDERAL SEED ACT...

  9. 7 CFR 944.106 - Grapefruit import regulation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Grapefruit import regulation. 944.106 Section 944.106 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  10. 7 CFR 944.106 - Grapefruit import regulation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Grapefruit import regulation. 944.106 Section 944.106 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  11. 7 CFR 944.312 - Orange import regulation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Orange import regulation. 944.312 Section 944.312 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  12. 7 CFR 944.550 - Kiwifruit import regulation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Kiwifruit import regulation. 944.550 Section 944.550 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  13. 7 CFR 944.550 - Kiwifruit import regulation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Kiwifruit import regulation. 944.550 Section 944.550 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  14. 7 CFR 944.106 - Grapefruit import regulation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Grapefruit import regulation. 944.106 Section 944.106 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  15. 7 CFR 944.550 - Kiwifruit import regulation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Kiwifruit import regulation. 944.550 Section 944.550 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  16. 7 CFR 944.550 - Kiwifruit import regulation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Kiwifruit import regulation. 944.550 Section 944.550 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  17. 7 CFR 944.106 - Grapefruit import regulation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Grapefruit import regulation. 944.106 Section 944.106 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  18. 7 CFR 944.312 - Orange import regulation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Orange import regulation. 944.312 Section 944.312 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  19. 7 CFR 944.312 - Orange import regulation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Orange import regulation. 944.312 Section 944.312 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  20. 7 CFR 944.312 - Orange import regulation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Orange import regulation. 944.312 Section 944.312 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  1. [Landscape planning approaches for biodiversity conservation in agriculture].

    PubMed

    Liu, Yun-hui; Li, Liang-tao; Yu, Zhen-rong

    2008-11-01

    Biodiversity conservation in agriculture not only relates to the sustainable development of agriculture, but also is an essential part of species conservation. In recent years, the landscape planning approach for biodiversity was highlighted instead of species-focused approach. In this paper, the landscape factors affecting the biodiversity in agriculture were reviewed, and the possible landscape approaches at three different scales for more efficient conservation of biodiversity in agro-landscape were suggested, including: (1) the increase of the proportion of natural or semi-natural habitats in agriculture, diversification of land use or crop pattern, and protection or construction of corridor at landscape level; (2) the establishment of non-cropping elements such as field margin at between-field level; and (3) the application of reasonable crop density, crop distribution pattern and rotation, and intercrop etc. at within-field level. It was suggested that the relevant policies for natural conservation, land use planning, and ecological compensation should be made to apply the landscape approaches for biodiversity conservation at larger scale.

  2. Using species sensitivity distribution approach to assess the risks of commonly detected agricultural pesticides to Australia's tropical freshwater ecosystems.

    PubMed

    Pathiratne, Asoka; Kroon, Frederieke J

    2016-02-01

    To assess the potential impacts of agricultural pesticides on tropical freshwater ecosystems, the present study developed temperature-specific, freshwater species protection concentrations (i.e., ecotoxicity threshold values) for 8 pesticides commonly detected in Australia's tropical freshwaters. Because relevant toxicity data for native tropical freshwater species to assess the ecological risks were mostly absent, scientifically robust toxicity data obtained at ≥20 °C were used for ecologically relevant taxonomic groups representing primary producers and consumers. Species sensitivity distribution (SSD) curves were subsequently generated for predicted chronic exposure using Burrlioz 2.0 software with mixed chronic and converted acute data relevant to exposure conditions at ≥20 °C. Ecotoxicity threshold values for tropical freshwater ecosystem protection were generated for ametryn, atrazine, diuron, metolachlor, and imidacloprid (all moderate reliability), as well as simazine, hexazinone, and tebuthiuron (all low reliability). Using these SSD curves, the retrospective risk assessments for recently reported pesticide concentrations highlight that the herbicides ametryn, atrazine, and diuron are of major concern for ecological health in Australia's tropical freshwater ecosystems. The insecticide imidacloprid also appears to pose an emerging threat to the most sensitive species in tropical freshwater ecosystems. The exposed temperature-specific approach may be applied to develop water quality guideline values for other environmental contaminants detected in tropical freshwater ecosystems until reliable and relevant toxicity data are generated using representative native species. © 2015 SETAC.

  3. New concepts regarding the production of waterfowl and other game birds in areas of diversified agriculture

    USGS Publications Warehouse

    Nelson, H.K.; Duebbert, H.F.

    1974-01-01

    Many concepts regarding breeding ecology of waterfowl and the influences of environmental factors on annual production have changed in the past 20 years. These influences are especially pronounced in the prairie region of central North America where agriculture becomes more intensive each year. The principal task assigned to this Research Center when established in 1965 was to determine the relative impact of these influences on production and to identify those facets of breeding biology, nesting habitat requirements and other factors that may be altered to increase production on lands dedicated for this purpose. A corollary objective was to develop methods for enhancing production of waterfowl and other ground-nesting birds on private lands in agricultural areas. Some of the highlights of our findings to date, together with the results from current work of others, provide new information on waterfowl that indicates: (1) homing instincts are not as specific as indicated by earlier workers, (2) there are differences in pioneering between species, sexes and age classes, (3) strength and duration of pair bonds vary by species and age classes, (4) territorial tolerances for most species are greater than previously indicated, (5) there is differential productivity by age classes in some species, (6) there has been a gradual decline in nesting success in the prairie region the past 30 years, (7) adverse influences of intensive agriculture are increasing, (8) mammalian predation is an important factor, (9) high quality, secure nesting habitat and a complex of wetland types are the essential components of an optimum production unit, (10) the size and shape of blocks of nesting cover are important management considerations, (11) overharvest of local breeding populations is becoming a serious problem in some areas. Each of these subjects is discussed as related to research objectives and current management problems. Recommendations are presented for obtaining maximum

  4. An overview of important ethnomedicinal herbs of Phyllanthus species: present status and future prospects.

    PubMed

    Sarin, Bharti; Verma, Nidhi; Martín, Juan Pedro; Mohanty, Aparajita

    2014-01-01

    The genus Phyllanthus consists of more than 1000 species, of which many are used as traditional medicines. The plant extracts have been used since ancient times, for treating hypertension, diabetes, hepatic, urinary, and sexual disorders, and other common ailments. Modern day scientific investigations have now confirmed pharmacognostic properties of Phyllanthus herbs. The phytochemicals attributing these medicinal properties have been identified in many of the Phyllanthus herbs. The morphologically similar herbs of Phyllanthus grow together and admixture of species during collection for manufacture of herbal medicines is quite common. Hence, along with pharmacognostic and phytochemical studies, appropriate protocols for correct identification of species are also important. As the use of these herbs as green medicines is becoming more popular, it is imperative to assess its genetic diversity and phylogenetic relatedness for future conservation strategies. This review is an attempt to present an overview of the existing studies on pharmacognostics, phytochemistry, species identification, and genetic diversity of Phyllanthus herbs and consequently (i) highlight areas where further research is needed and (ii) draw attention towards extending similar studies in underutilized but potentially important herbs such as P. maderaspatensis, P. kozhikodianus, P. rheedii, P. scabrifolius, and P. rotundifolius.

  5. An Overview of Important Ethnomedicinal Herbs of Phyllanthus Species: Present Status and Future Prospects

    PubMed Central

    Sarin, Bharti; Martín, Juan Pedro; Mohanty, Aparajita

    2014-01-01

    The genus Phyllanthus consists of more than 1000 species, of which many are used as traditional medicines. The plant extracts have been used since ancient times, for treating hypertension, diabetes, hepatic, urinary, and sexual disorders, and other common ailments. Modern day scientific investigations have now confirmed pharmacognostic properties of Phyllanthus herbs. The phytochemicals attributing these medicinal properties have been identified in many of the Phyllanthus herbs. The morphologically similar herbs of Phyllanthus grow together and admixture of species during collection for manufacture of herbal medicines is quite common. Hence, along with pharmacognostic and phytochemical studies, appropriate protocols for correct identification of species are also important. As the use of these herbs as green medicines is becoming more popular, it is imperative to assess its genetic diversity and phylogenetic relatedness for future conservation strategies. This review is an attempt to present an overview of the existing studies on pharmacognostics, phytochemistry, species identification, and genetic diversity of Phyllanthus herbs and consequently (i) highlight areas where further research is needed and (ii) draw attention towards extending similar studies in underutilized but potentially important herbs such as P. maderaspatensis, P. kozhikodianus, P. rheedii, P. scabrifolius, and P. rotundifolius. PMID:24672382

  6. The importance of plot size and the number of sampling seasons on capturing macrofungal species richness.

    PubMed

    Li, Huili; Ostermann, Anne; Karunarathna, Samantha C; Xu, Jianchu; Hyde, Kevin D; Mortimer, Peter E

    2018-07-01

    The species-area relationship is an important factor in the study of species diversity, conservation biology, and landscape ecology. A deeper understanding of this relationship is necessary, in order to provide recommendations on how to improve the quality of data collection on macrofungal diversity in different land use systems in future studies, a systematic assessment of methodological parameters, in particular optimal plot sizes. The species-area relationship of macrofungi in tropical and temperate climatic zones and four different land use systems were investigated by determining the macrofungal species richness in plot sizes ranging from 100 m 2 to 10 000 m 2 over two sampling seasons. We found that the effect of plot size on recorded species richness significantly differed between land use systems with the exception of monoculture systems. For both climate zones, land use system needs to be considered when determining optimal plot size. Using an optimal plot size was more important than temporal replication (over two sampling seasons) in accurately recording species richness. Copyright © 2018 British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  7. Are ecologically important tree species the most useful? A case study from indigenous people in the Bolivian Amazon.

    PubMed

    Guèze, Maximilien; Luz, Ana Catarina; Paneque-Gálvez, Jaime; Macía, Manuel J; Orta-Martínez, Martí; Pino, Joan; Reyes-García, Victoria

    2014-03-01

    Researchers have argued that indigenous peoples preferably use the most apparent plant species, particularly for medicinal uses. However, the association between the ecological importance of a species and its usefulness remains unclear. In this paper we quantify such association for six use categories (firewood, construction, materials, food, medicines and other uses). We collected data on the uses of 58 tree species, as reported by 93 informants in 22 villages in the Tsimane' territory (Bolivian Amazon). We calculated the ecological importance of the same species by deriving their importance value index (IVI) in 48 0.1-ha old-growth forest plots. Matching both data sets, we found a positive relation between the IVI of a species and its overall use value (UV) as well as with its UV for construction and materials. We found a negative relation between IVI and UV for species that were reportedly used for medicine and food uses, and no clear pattern for the other categories. We hypothesize that species used for construction or crafting purposes because of their physical properties are more easily substitutable than species used for medicinal or edible purposes because of their chemical properties.

  8. Are ecologically important tree species the most useful? A case study from indigenous people in the Bolivian Amazon

    PubMed Central

    Guèze, Maximilien; Luz, Ana Catarina; Paneque-Gálvez, Jaime; Macía, Manuel J.; Orta-Martínez, Martí; Pino, Joan; Reyes-García, Victoria

    2015-01-01

    Researchers have argued that indigenous peoples preferably use the most apparent plant species, particularly for medicinal uses. However, the association between the ecological importance of a species and its usefulness remains unclear. In this paper we quantify such association for six use categories (firewood, construction, materials, food, medicines and other uses). We collected data on the uses of 58 tree species, as reported by 93 informants in 22 villages in the Tsimane’ territory (Bolivian Amazon). We calculated the ecological importance of the same species by deriving their importance value index (IVI) in 48 0.1-ha old-growth forest plots. Matching both data sets, we found a positive relation between the IVI of a species and its overall use value (UV) as well as with its UV for construction and materials. We found a negative relation between IVI and UV for species that were reportedly used for medicine and food uses, and no clear pattern for the other categories. We hypothesize that species used for construction or crafting purposes because of their physical properties are more easily substitutable than species used for medicinal or edible purposes because of their chemical properties. PMID:26097243

  9. Microplastics as contaminants in commercially important seafood species.

    PubMed

    Santillo, David; Miller, Kathryn; Johnston, Paul

    2017-05-01

    The ingestion of microplastic fragments, spheres, and fibers by marine mollusks, crustaceans, and fish, including a number of commercially important species, appears to be a widespread and pervasive phenomenon. Evidence is also growing for direct impacts of microplastic ingestion on physiology, reproductive success and survival of exposed marine organisms, and transfer through food webs, although the ecological implications are not yet known. Concerns also remain over the capacity for microplastics to act as vectors for harmful chemical pollutants, including plastic additives and persistent organic pollutants, although their contribution must be evaluated alongside other known sources. The potential for humans, as top predators, to consume microplastics as contaminants in seafood is very real, and its implications for health need to be considered. An urgent need also exists to extend the geographical scope of studies of microplastic contamination in seafood species to currently underrepresented areas, and to finalize and adopt standardized methods and quality-assurance protocols for the isolation, identification, and quantification of microplastic contaminants from biological tissues. Such developments would enable more robust investigation of spatial and temporal trends, thereby contributing further evidence as a sound basis for regulatory controls. Despite the existence of considerable uncertainties and unknowns, there is already a compelling case for urgent actions to identify, control, and, where possible, eliminate key sources of both primary and secondary microplastics before they reach the marine environment. Integr Environ Assess Manag 2017;13:516-521. © 2017 SETAC. © 2017 SETAC.

  10. Variation in the chilling requirement and bud burst rate of wild Vitis species

    USDA-ARS?s Scientific Manuscript database

    Cultivated grapevine (Vitis vinifera) is one of the most important agricultural fruit crops in the world. In the United States, grapevines are often grown in environments very different than the Mediterranean climate from where the cultivated species was domesticated. Predictions of changing clima...

  11. Important biological factors for utilizing native plant species

    Treesearch

    Loren E. Wiesner

    1999-01-01

    Native plant species are valuable resources for revegetation of disturbed ecosystems. The success of these plantings is dependent on the native species selected, quality of seed used, condition of the soil, environmental conditions before and after planting, planting equipment used, time of planting, and other factors. Most native species contain dormant seed. Dormancy...

  12. Impact of urban agriculture on malaria vectors in Accra, Ghana

    PubMed Central

    Klinkenberg, Eveline; McCall, PJ; Wilson, Michael D; Amerasinghe, Felix P; Donnelly, Martin J

    2008-01-01

    To investigate the impact of urban agriculture on malaria transmission risk in urban Accra larval and adult stage mosquito surveys, were performed. Local transmission was implicated as Anopheles spp. were found breeding and infected Anopheles mosquitoes were found resting in houses in the study sites. The predominant Anopheles species was Anopheles gambiae s.s.. The relative proportion of molecular forms within a subset of specimens was 86% S-form and 14% M-form. Anopheles spp. and Culex quinquefasciatus outdoor biting rates were respectively three and four times higher in areas around agricultural sites (UA) than in areas far from agriculture (U). The annual Entomological Inoculation Rate (EIR), the number of infectious bites received per individual per year, was 19.2 and 6.6 in UA and U sites, respectively. Breeding sites were highly transitory in nature, which poses a challenge for larval control in this setting. The data also suggest that the epidemiological importance of urban agricultural areas may be the provision of resting sites for adults rather than an increased number of larval habitats. Host-seeking activity peaked between 2–3 am, indicating that insecticide-treated bednets should be an effective control method. PMID:18680565

  13. Impact of urban agriculture on malaria vectors in Accra, Ghana.

    PubMed

    Klinkenberg, Eveline; McCall, Pj; Wilson, Michael D; Amerasinghe, Felix P; Donnelly, Martin J

    2008-08-04

    To investigate the impact of urban agriculture on malaria transmission risk in urban Accra larval and adult stage mosquito surveys, were performed. Local transmission was implicated as Anopheles spp. were found breeding and infected Anopheles mosquitoes were found resting in houses in the study sites. The predominant Anopheles species was Anopheles gambiae s.s.. The relative proportion of molecular forms within a subset of specimens was 86% S-form and 14% M-form. Anopheles spp. and Culex quinquefasciatus outdoor biting rates were respectively three and four times higher in areas around agricultural sites (UA) than in areas far from agriculture (U). The annual Entomological Inoculation Rate (EIR), the number of infectious bites received per individual per year, was 19.2 and 6.6 in UA and U sites, respectively. Breeding sites were highly transitory in nature, which poses a challenge for larval control in this setting. The data also suggest that the epidemiological importance of urban agricultural areas may be the provision of resting sites for adults rather than an increased number of larval habitats. Host-seeking activity peaked between 2-3 am, indicating that insecticide-treated bednets should be an effective control method.

  14. Particulate matter characteristics during agricultural waste burning in Taichung City, Taiwan.

    PubMed

    Cheng, Man-Ting; Horng, Chuen-Liang; Su, Yi-Ru; Lin, Li-Kai; Lin, Yu-Chi; Chou, Charles C-K

    2009-06-15

    Agricultural waste burning is performed after harvest periods in June and November in Taiwan. Typically, farmers use open burning to dispose of excess rice straw. PM(2.5) and PM(2.5-10) measurements were conducted at National Chung Hsing University in Taichung City using a dichotomous sampler. The sampling times were during straw burning periods after rice harvest during 2002-2005. Ionic species including SO(4)(2-), NO(3)(-), NH(4)(+), K(+), Ca(2+), Cl(-) and Na(+) and carbonaceous species (EC and OC) in PM(2.5) and PM(2.5-10) were analyzed. The results showed that the average PM(2.5) and PM(2.5-10) concentrations were 123.6 and 31.5 microg m(-3) during agricultural waste burning periods and 32.6 and 21.4 microg m(-3) during non-waste burning periods, respectively. The fine aerosol ionic species including Cl(-), K(+) and NO(3)(-) increased 11.0, 6.7 and 5.5 times during agricultural burning periods compared with periods when agricultural waste burning is not performed. K(+) was found mainly in the fine mode during agricultural burning. High nitrogen oxidation ratio was found during agricultural waste burning periods which might be caused by the conversion of Nitrogen dioxide (NO(2)) to NO(3)(-). It is concluded that agricultural waste burning with low dispersion often causes high PM(2.5) and gases pollutant events.

  15. Phytochemical overview and medicinal importance of Coffea species from the past until now.

    PubMed

    Patay, Éva Brigitta; Bencsik, Tímea; Papp, Nóra

    2016-12-01

    Coffea (coffee) species are grown in almost all countries along the Equator. Many members of the genus have a large production history and an important role both in the global market and researches. Seeds (Coffeae semen) are successfully used in food, cosmetic, and pharmaceutical industries due to its caffeine and high polyphenol content. Nowadays, the three best-known coffee species are Arabic (Coffea arabica L.), Robusta (Coffea robusta L. Linden), and Liberian coffees (Coffea liberica Hiern.). Even though, many records are available on coffee in scientific literature, wild coffee species like Bengal coffee (Coffea benghalensis Roxb. Ex Schult.) could offer many new opportunities and challenges for phytochemical and medical studies. In this comprehensive summary, we focused on the ethnomedicinal, phytochemical, and medical significance of coffee species up to the present. Copyright © 2016 Hainan Medical University. Production and hosting by Elsevier B.V. All rights reserved.

  16. Long-Term Changes in Game Species Over a Long Period of Transformation in the Iberian Mediterranean Landscape

    NASA Astrophysics Data System (ADS)

    Delibes-Mateos, Miguel; Farfán, Miguel Ángel; Olivero, Jesús; Márquez, Ana Luz; Vargas, Juan Mario

    2009-06-01

    Agricultural change has transformed large areas of traditional farming landscapes, leading to important changes in the species community assemblages in most European countries. We suspect that the drastic changes in land-use that have occurred in Andalusia (southern Spain) over recent decades, may have affected the distribution and abundance of game species in this region. This article compares the distribution of the main game species in Andalusia during the 1960s and 1990s, using data from maps available from the Mainland Spanish Fish, Game and National Parks Service and from recent datasets on hunting yield distributions, respectively. Big-game and small-game species were significantly segregated in southern Spain during the 1990s, as two clearly independent chorotypes (groups of species whose abundances are similarly distributed) were obtained from the classification analysis. In contrast, big-game and small-game species were not significantly segregated several decades ago, when there was only one chorotype consisting of small-game species and wild boar. The other three ungulates did not constitute a significant chorotype, as they showed positive correlations with some species in the group mentioned above. These changes seem to be a consequence of the transformations that have occurred in the Iberian Mediterranean landscape over the last few decades. The abandoning of traditional activities, and the consequent formation of dense scrubland and woodland, has led to an expansion of big-game species, and a decrease of small-game species in mountain areas. Moreover, agricultural intensification has apparently depleted small-game species populations in some agricultural areas. On the other hand, the increasingly intensive hunting management could be artificially boosting this segregation between small-game and big-game species. Our results suggest that the conservation and regeneration of traditional agricultural landscapes (like those predominating in the 1960s

  17. Species Sorting of Benthic Invertebrates in a Salinity Gradient - Importance of Dispersal Limitation.

    PubMed

    Josefson, Alf B

    2016-01-01

    The relative importance of environment and dispersal related processes for community assembly has attracted great interest over recent decades, but few empirical studies from the marine/estuarine realm have examined the possible effects of these two types of factors in the same system. Importance of these processes was investigated in a hypothetical metacommunity of benthic invertebrates in 16 micro-tidal estuaries connected to the same open sea area. The estuaries differed in size and connectivity to the open sea and represented a salinity gradient across the estuaries. The Elements of Metacommunity Structure (EMS) approach on estuary scale was complemented with a mechanistic variance partitioning approach on sample scale to disentangle effects of factors affecting assembly of three trait groups of species with different dispersivity. A quasi-Clementsian pattern was observed for all three traits, a likely response to some latent gradient. The primary axis in the pattern was most strongly related to gradients in estuary salinity and estuary entrance width and correlation with richness indicated nestedness only in the matrix of the most dispersive trait group. In the variance partitioning approach measures of turnover and nestedness between paired samples each from different estuaries were related to environmental distance in different gradients. Distance between estuaries was unimportant suggesting importance of factors characterizing the estuaries. While the high dispersive species mainly were sorted in the salinity gradient, apparently according to their tolerance ranges towards salinity, the two less dispersive traits were additionally affected by estuary entrance width and possibly also area. The results exemplify a mechanism of community assembly in the marine realm where the niche factor salinity in conjunction with differential dispersal structure invertebrates in a metacommunity of connected estuaries, and support the idea that dispersive species are more

  18. The Application of COI Gene for Species Identification of Forensically Important Muscid Flies (Diptera: Muscidae).

    PubMed

    Ren, Lipin; Chen, Wei; Shang, Yanjie; Meng, Fanming; Zha, Lagabaiyila; Wang, Yong; Guo, Yadong

    2018-05-17

    Muscid Flies (Diptera: Muscidae) are of great forensic importance due to their wide distribution, ubiquitous and synanthropic nature. They are frequently neglected as they tend to arrive at the corpses later than the flesh flies and blow flies. Moreover, the lack of species-level identification also hinders investigation of medicolegal purposes. To overcome the difficulty of morphological identification, molecular method has gained relevance. Cytochrome c oxidase subunit I (COI) gene has been widely utilized. Nonetheless, to achieve correct identification of an unknown sample, it is important to survey certain muscid taxa from its geographic distribution range. Accordingly, the aim of this study is to contribute more geographically specific. We sequenced the COI gene of 51 muscid specimens of 12 species, and added all correct sequences available in GenBank to yield a total data set of 125 COI sequences from 33 muscid species to evaluate the COI gene as a molecular diagnostic tool. The interspecific distances were extremely high (4.7-19.8%) in either the standard barcoding fragment (658 bp) or the long COI sequence (1,019-1,535 bp), demonstrating that these two genetic markers were nearly identical in the species identification. However, the intraspecific distances of the long COI sequences were significantly higher than the barcoding region for the conspecific species that geographical locations vary greatly. Therefore, genetic diversity presented in this study provides a reference for species identification of muscid flies. Nevertheless, further investigation and data from more muscid species are required to enhance the efficacy of species-level identification using COI gene as a genetic marker.

  19. Climate impacts on European agriculture and water management in the context of adaptation and mitigation--the importance of an integrated approach.

    PubMed

    Falloon, Pete; Betts, Richard

    2010-11-01

    We review and qualitatively assess the importance of interactions and feedbacks in assessing climate change impacts on water and agriculture in Europe. We focus particularly on the impact of future hydrological changes on agricultural greenhouse gas (GHG) mitigation and adaptation options. Future projected trends in European agriculture include northward movement of crop suitability zones and increasing crop productivity in Northern Europe, but declining productivity and suitability in Southern Europe. This may be accompanied by a widening of water resource differences between the North and South, and an increase in extreme rainfall events and droughts. Changes in future hydrology and water management practices will influence agricultural adaptation measures and alter the effectiveness of agricultural mitigation strategies. These interactions are often highly complex and influenced by a number of factors which are themselves influenced by climate. Mainly positive impacts may be anticipated for Northern Europe, where agricultural adaptation may be shaped by reduced vulnerability of production, increased water supply and reduced water demand. However, increasing flood hazards may present challenges for agriculture, and summer irrigation shortages may result from earlier spring runoff peaks in some regions. Conversely, the need for effective adaptation will be greatest in Southern Europe as a result of increased production vulnerability, reduced water supply and increased demands for irrigation. Increasing flood and drought risks will further contribute to the need for robust management practices. The impacts of future hydrological changes on agricultural mitigation in Europe will depend on the balance between changes in productivity and rates of decomposition and GHG emission, both of which depend on climatic, land and management factors. Small increases in European soil organic carbon (SOC) stocks per unit land area are anticipated considering changes in climate

  20. Effects of agricultural intensification on ability of natural enemies to control aphids

    PubMed Central

    Zhao, Zi-Hua; Hui, Cang; He, Da-Han; Li, Bai-Lian

    2015-01-01

    Agricultural intensification through increasing fertilization input and cropland expansion has caused rapid loss of semi-natural habitats and the subsequent loss of natural enemies of agricultural pests. It is however extremely difficult to disentangle the effects of agricultural intensification on arthropod communities at multiple spatial scales. Based on a two-year study of seventeen 1500 m-radius sites, we analyzed the relative importance of nitrogen input and cropland expansion on cereal aphids and their natural enemies. Both the input of nitrogen fertilizer and cropland expansion benefited cereal aphids more than primary parasitoids and leaf-dwelling predators, while suppressing ground-dwelling predators, leading to an disturbance of the interspecific relationship. The responses of natural enemies to cropland expansion were asymmetric and species-specific, with an increase of primary parasitism but a decline of predator/pest ratio with the increasing nitrogen input. As such, agricultural intensification (increasing nitrogen fertilizer and cropland expansion) can destabilize the interspecific relationship and lead to biodiversity loss. To this end, sustainable pest management needs to balance the benefit and cost of agricultural intensification and restore biocontrol service through proliferating the role of natural enemies at multiple scales. PMID:25620737

  1. 7 CFR 996.6 - Importation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 8 2010-01-01 2010-01-01 false Importation. 996.6 Section 996.6 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements... peanuts into channels of commerce of the United States. ...

  2. The ERTS-1 investigation (ER-600). Volume 1: ERTS-1 agricultural analysis

    NASA Technical Reports Server (NTRS)

    Erb, R. B.

    1974-01-01

    The Agriculture Analysis Team of the Johnson Space Center conducted a 1-year-long investigation of ERTS-1 multispectral data to evaluate how well features of agricultural importance could be detected, identified, and located; and their areal extent measured. Six study areas were selected in cooperation with the U.S. Department of Agriculture. Two basic analytical approaches were used to meet the objectives. The conventional image interpretation technique revealed that a particular color was an indication of the density of vegetative cover, not an indication of crop classification. Computer-aided techniques were used to classify crop types (i.e., small grains, truck farm crops, grasses, summer fallow) to accuracies as high as 95 percent on large (12 hectares or more) well-defined fields. A further breakdown into crop species (wheat, barley, soybeans, oats, corn) reduced the accuracy to 70 to 80 percent for single-date observations.

  3. Effects of conversion of dry tropical forest to agricultural mosaic on herpetofaunal assemblages.

    PubMed

    Suazo-Ortuño, Ireri; Alvarado-Díaz, Javier; Martínez-Ramos, Miguel

    2008-04-01

    We explored the impact of forest conversion to agricultural mosaic on anuran, lizard, snake, and turtle assemblages of Neotropical dry forests. Over 2 years, we sampled 6 small watersheds on the west coast of Mexico, 3 conserved and 3 disturbed. The disturbed watersheds were characterized by a mosaic of pastures and cultivated fields (corn, beans, squash) intermingled with patches of different successional stages of dry forest. In each watershed, we conducted 11 diurnal and nocturnal time-constrained searches in 10 randomly established plots. We considered vulnerability traits of species in relation to habitat modification. Eighteen anuran, 18 lizard, 23 snake, and 3 turtle species were recorded. Thirty-six species (58%) occurred in both forest conditions, and 14 (22%) and 12 species (19%) occurred only in the conserved and disturbed sites, respectively. Assemblages responded differently to disturbance. Species richness, diversity, and abundance of lizards were higher in disturbed forests. Anuran diversity and species richness were lower in disturbed forest but abundance was similar in both forest conditions. Diversity, richness, and abundance of turtles were lower in disturbed forest. The structure and composition of snake assemblages did not differ between forest conditions. We considered species disturbance sensitive if their abundance was significantly less in disturbed areas. Four anuran (22%), 2 lizard (11%), and 3 turtle (100%) species were sensitive to disturbance. No snake species was sensitive. The decline in abundance of disturbance-sensitive species was associated with the reduction of forest canopy cover, woody stem cover, roots, and litter-layer ground cover. Anuran species with small body size and direct embryonic development were especially sensitive to forest disturbance. An important goal for the conservation of herpetofauna should be the determination of species traits associated with extinction or persistence in agricultural mosaics.

  4. Effects of climatic conditions and management practices on agricultural carbon and water budgets in the Inland Pacific Northwest USA

    USDA-ARS?s Scientific Manuscript database

    Cropland is an important land cover influencing global carbon and water cycles. Variability of agricultural carbon and water fluxes depends on crop species, management practices, soil characteristics, and climatic conditions. In the context of climate change, it is critical to quantify the long-term...

  5. Agricultural diversification as an important strategy for achieving food security in Africa.

    PubMed

    Waha, Katharina; van Wijk, Mark T; Fritz, Steffen; See, Linda; Thornton, Philip K; Wichern, Jannike; Herrero, Mario

    2018-03-31

    Farmers in Africa have long adapted to climatic and other risks by diversifying their farming activities. Using a multi-scale approach, we explore the relationship between farming diversity and food security and the diversification potential of African agriculture and its limits on the household and continental scale. On the household scale, we use agricultural surveys from more than 28,000 households located in 18 African countries. In a next step, we use the relationship between rainfall, rainfall variability, and farming diversity to determine the available diversification options for farmers on the continental scale. On the household scale, we show that households with greater farming diversity are more successful in meeting their consumption needs, but only up to a certain level of diversity per ha cropland and more often if food can be purchased from off-farm income or income from farm sales. More diverse farming systems can contribute to household food security; however, the relationship is influenced by other factors, for example, the market orientation of a household, livestock ownership, nonagricultural employment opportunities, and available land resources. On the continental scale, the greatest opportunities for diversification of food crops, cash crops, and livestock are located in areas with 500-1,000 mm annual rainfall and 17%-22% rainfall variability. Forty-three percent of the African cropland lacks these opportunities at present which may hamper the ability of agricultural systems to respond to climate change. While sustainable intensification practices that increase yields have received most attention to date, our study suggests that a shift in the research and policy paradigm toward agricultural diversification options may be necessary. © 2018 The Authors Global Change Biology Published by John Wiley & Sons Ltd.

  6. Biology and management of two important Conyza weeds: a global review.

    PubMed

    Bajwa, Ali Ahsan; Sadia, Sehrish; Ali, Hafiz Haider; Jabran, Khawar; Peerzada, Arslan Masood; Chauhan, Bhagirath Singh

    2016-12-01

    Weed management is one of the prime concerns for sustainable crop production. Conyza bonariensis and Conyza canadensis are two of the most problematic, noxious, invasive and widespread weeds in modern-day agriculture. The biology, ecology and interference of C. bonariensis and C. canadensis have been reviewed here to highlight pragmatic management options. Both these species share a unique set of biological features, which enables them to invade and adapt a wide range of environmental conditions. Distinct reproductive biology and an efficient seed dispersal mechanism help these species to spread rapidly. Ability to interfere strongly and to host crop pests makes these two species worst weeds of cropping systems. These weed species cause 28-68 % yield loss in important field crops such as soybean and cotton every year. These weeds are more prevalent in no-till systems and, thus, becoming a major issue in conservation agriculture. Cultural practices such as crop rotations, seed rate manipulation, mulching, inter-row tillage and narrow row spacing may provide an effective control of these species. However, such methods are not feasible and applicable under all types of conditions. Different herbicides also provide a varying degree of control depending on crop, agronomic practices, herbicide dose, application time and season. However, both these species have evolved resistance against multiple herbicides, including glyphosate and paraquat. The use of alternative herbicides and integrated management strategies may provide better control of herbicide-resistant C. bonariensis and C. canadensis. Management plans based on the eco-biological interactions of these species may prove sustainable in the future.

  7. Present and future ecological niche modeling of garter snake species from the Trans-Mexican Volcanic Belt

    PubMed Central

    García-Vázquez, Uri; D’Addario, Maristella

    2018-01-01

    Land use and climate change are affecting the abundance and distribution of species. The Trans-Mexican Volcanic Belt (TMVB) is a very diverse region due to geological history, geographic position, and climate. It is also one of the most disturbed regions in Mexico. Reptiles are particularly sensitive to environmental changes due to their low dispersal capacity and thermal ecology. In this study, we define the important environmental variables (considering climate, topography, and land use) and potential distribution (present and future) of the five Thamnophis species present in TMVB. To do so, we used the maximum entropy modeling software (MAXENT). First, we modeled to select the most important variables to explain the distribution of each species, then we modeled again using only the most important variables and projected these models to the future considering a middle-moderate climate change scenario (rcp45), and land use and vegetation variables for the year 2050 (generated according to land use changes that occurred between years 2002 and 2011). Arid vegetation had an important negative effect on habitat suitability for all species, and minimum temperature of the coldest month was important for four of the five species. Thamnophis cyrtopsis was the species with the lowest tolerance to minimum temperatures. The maximum temperature of the warmest month was important for T. scalaris and T. cyrtopsis. Low percentages of agriculture were positive for T. eques and T. melanogaster but, at higher values, agriculture had a negative effect on habitat suitability for both species. Elevation was the most important variable to explain T. eques and T. melanogaster potential distribution while distance to Abies forests was the most important variable for T. scalaris and T. scaliger. All species had a high proportion of their potential distribution in the TMVB. However, according to our models, all Thamnophis species will experience reductions in their potential

  8. Intensive agriculture reduces soil biodiversity across Europe.

    PubMed

    Tsiafouli, Maria A; Thébault, Elisa; Sgardelis, Stefanos P; de Ruiter, Peter C; van der Putten, Wim H; Birkhofer, Klaus; Hemerik, Lia; de Vries, Franciska T; Bardgett, Richard D; Brady, Mark Vincent; Bjornlund, Lisa; Jørgensen, Helene Bracht; Christensen, Sören; Hertefeldt, Tina D'; Hotes, Stefan; Gera Hol, W H; Frouz, Jan; Liiri, Mira; Mortimer, Simon R; Setälä, Heikki; Tzanopoulos, Joseph; Uteseny, Karoline; Pižl, Václav; Stary, Josef; Wolters, Volkmar; Hedlund, Katarina

    2015-02-01

    Soil biodiversity plays a key role in regulating the processes that underpin the delivery of ecosystem goods and services in terrestrial ecosystems. Agricultural intensification is known to change the diversity of individual groups of soil biota, but less is known about how intensification affects biodiversity of the soil food web as a whole, and whether or not these effects may be generalized across regions. We examined biodiversity in soil food webs from grasslands, extensive, and intensive rotations in four agricultural regions across Europe: in Sweden, the UK, the Czech Republic and Greece. Effects of land-use intensity were quantified based on structure and diversity among functional groups in the soil food web, as well as on community-weighted mean body mass of soil fauna. We also elucidate land-use intensity effects on diversity of taxonomic units within taxonomic groups of soil fauna. We found that between regions soil food web diversity measures were variable, but that increasing land-use intensity caused highly consistent responses. In particular, land-use intensification reduced the complexity in the soil food webs, as well as the community-weighted mean body mass of soil fauna. In all regions across Europe, species richness of earthworms, Collembolans, and oribatid mites was negatively affected by increased land-use intensity. The taxonomic distinctness, which is a measure of taxonomic relatedness of species in a community that is independent of species richness, was also reduced by land-use intensification. We conclude that intensive agriculture reduces soil biodiversity, making soil food webs less diverse and composed of smaller bodied organisms. Land-use intensification results in fewer functional groups of soil biota with fewer and taxonomically more closely related species. We discuss how these changes in soil biodiversity due to land-use intensification may threaten the functioning of soil in agricultural production systems. © 2014 John Wiley

  9. Stakeholder perspectives on the importance of rare-species research for deep-sea environmental management

    NASA Astrophysics Data System (ADS)

    Turner, Phillip J.; Campbell, Lisa M.; Van Dover, Cindy L.

    2017-07-01

    The apparent prevalence of rare species (rarity) in the deep sea is a concern for environmental management and conservation of biodiversity. Rare species are often considered at risk of extinction and, in terrestrial and shallow water environments, have been shown to play key roles within an ecosystem. In the deep-sea environment, current research focuses primarily on abundant species and deep-sea stakeholders are questioning the importance of rare species in ecosystem functioning. This study asks whether deep-sea stakeholders (primarily scientists) view rare-species research as a priority in guiding environmental management. Delphi methodology (i.e., an iterative survey approach) was used to understand views about whether or not 'deep-sea scientists should allocate more resources to research on rare species in the deep sea, even if this means less resources might be available for abundant-species research.' Results suggest little consensus regarding the prioritization of resources for rare-species research. From Survey 1 to Survey 3, the average participant response shifted toward a view that rare-species research is not a priority if it comes at a cost to research on abundant species. Participants pointed to the need for a balanced approach and highlighted knowledge gaps about even the most fundamental questions, including whether rare species are truly 'rare' or simply under-sampled. Participants emphasized the lack of basic biological knowledge for rare and abundant species, particularly abundant meio- and microscopic species, as well as uncertainty in the roles rare and abundant species play in ecosystem processes. Approaches that jointly consider the role of rare and abundant species in ecosystem functioning (e.g., biological trait analysis) may help to clarify the extent to which rare species need to be incorporated into deep-sea environment management in order to maintain ecosystem functioning.

  10. Using the Developmental Gene Bicoid to Identify Species of Forensically Important Blowflies (Diptera: Calliphoridae)

    PubMed Central

    Park, Seong Hwan; Park, Chung Hyun; Zhang, Yong; Piao, Huguo; Chung, Ukhee; Kim, Seong Yoon; Ko, Kwang Soo; Yi, Cheong-Ho; Jo, Tae-Ho; Hwang, Juck-Joon

    2013-01-01

    Identifying species of insects used to estimate postmortem interval (PMI) is a major subject in forensic entomology. Because forensic insect specimens are morphologically uniform and are obtained at various developmental stages, DNA markers are greatly needed. To develop new autosomal DNA markers to identify species, partial genomic sequences of the bicoid (bcd) genes, containing the homeobox and its flanking sequences, from 12 blowfly species (Aldrichina grahami, Calliphora vicina, Calliphora lata, Triceratopyga calliphoroides, Chrysomya megacephala, Chrysomya pinguis, Phormia regina, Lucilia ampullacea, Lucilia caesar, Lucilia illustris, Hemipyrellia ligurriens and Lucilia sericata; Calliphoridae: Diptera) were determined and analyzed. This study first sequenced the ten blowfly species other than C. vicina and L. sericata. Based on the bcd sequences of these 12 blowfly species, a phylogenetic tree was constructed that discriminates the subfamilies of Calliphoridae (Luciliinae, Chrysomyinae, and Calliphorinae) and most blowfly species. Even partial genomic sequences of about 500 bp can distinguish most blowfly species. The short intron 2 and coding sequences downstream of the bcd homeobox in exon 3 could be utilized to develop DNA markers for forensic applications. These gene sequences are important in the evolution of insect developmental biology and are potentially useful for identifying insect species in forensic science. PMID:23586044

  11. 7 CFR 319.75 - Restrictions on importation of restricted articles; disposal of articles refused importation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Restrictions on importation of restricted articles; disposal of articles refused importation. 319.75 Section 319.75 Agriculture Regulations of the Department... FOREIGN QUARANTINE NOTICES Khapra Beetle § 319.75 Restrictions on importation of restricted articles...

  12. 7 CFR 319.75 - Restrictions on importation of restricted articles; disposal of articles refused importation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Restrictions on importation of restricted articles; disposal of articles refused importation. 319.75 Section 319.75 Agriculture Regulations of the Department... FOREIGN QUARANTINE NOTICES Khapra Beetle § 319.75 Restrictions on importation of restricted articles...

  13. 7 CFR 57.920 - Importer to make application for inspection of imported eggs.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... imported eggs. 57.920 Section 57.920 Agriculture Regulations of the Department of Agriculture (Continued... (CONTINUED) REGULATIONS AND STANDARDS UNDER THE AGRICULTURAL MARKETING ACT OF 1946 AND THE EGG PRODUCTS INSPECTION ACT (CONTINUED) INSPECTION OF EGGS (EGG PRODUCTS INSPECTION ACT) Regulations Governing the...

  14. 7 CFR 57.920 - Importer to make application for inspection of imported eggs.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... imported eggs. 57.920 Section 57.920 Agriculture Regulations of the Department of Agriculture (Continued... (CONTINUED) REGULATIONS AND STANDARDS UNDER THE AGRICULTURAL MARKETING ACT OF 1946 AND THE EGG PRODUCTS INSPECTION ACT (CONTINUED) INSPECTION OF EGGS (EGG PRODUCTS INSPECTION ACT) Regulations Governing the...

  15. 7 CFR 944.700 - Fresh prune import regulation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Fresh prune import regulation. 944.700 Section 944.700 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  16. 7 CFR 944.700 - Fresh prune import regulation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Fresh prune import regulation. 944.700 Section 944.700 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  17. 7 CFR 944.700 - Fresh prune import regulation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Fresh prune import regulation. 944.700 Section 944.700 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  18. 7 CFR 944.700 - Fresh prune import regulation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Fresh prune import regulation. 944.700 Section 944.700 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE FRUITS; IMPORT REGULATIONS § 944...

  19. Agricultural Roots in the Biological Sciences

    ERIC Educational Resources Information Center

    Laughlin, Charles W.; And Others

    1978-01-01

    A wide variety of careers related to agriculture and based on studies of the biological sciences are discussed. The importance of agriculture in our society as well as the educational means to an agricultural career are outlined. (MDR)

  20. Biodiversity conservation in agriculture requires a multi-scale approach.

    PubMed

    Gonthier, David J; Ennis, Katherine K; Farinas, Serge; Hsieh, Hsun-Yi; Iverson, Aaron L; Batáry, Péter; Rudolphi, Jörgen; Tscharntke, Teja; Cardinale, Bradley J; Perfecto, Ivette

    2014-09-22

    Biodiversity loss--one of the most prominent forms of modern environmental change--has been heavily driven by terrestrial habitat loss and, in particular, the spread and intensification of agriculture. Expanding agricultural land-use has led to the search for strong conservation strategies, with some suggesting that biodiversity conservation in agriculture is best maximized by reducing local management intensity, such as fertilizer and pesticide application. Others highlight the importance of landscape-level approaches that incorporate natural or semi-natural areas in landscapes surrounding farms. Here, we show that both of these practices are valuable to the conservation of biodiversity, and that either local or landscape factors can be most crucial to conservation planning depending on which types of organisms one wishes to save. We performed a quantitative review of 266 observations taken from 31 studies that compared the impacts of localized (within farm) management strategies and landscape complexity (around farms) on the richness and abundance of plant, invertebrate and vertebrate species in agro-ecosystems. While both factors significantly impacted species richness, the richness of sessile plants increased with less-intensive local management, but did not significantly respond to landscape complexity. By contrast, the richness of mobile vertebrates increased with landscape complexity, but did not significantly increase with less-intensive local management. Invertebrate richness and abundance responded to both factors. Our analyses point to clear differences in how various groups of organisms respond to differing scales of management, and suggest that preservation of multiple taxonomic groups will require multiple scales of conservation. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

  1. Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

    PubMed Central

    Wilcox, Taylor M.; McKelvey, Kevin S.; Young, Michael K.; Jane, Stephen F.; Lowe, Winsor H.; Whiteley, Andrew R.; Schwartz, Michael K.

    2013-01-01

    Environmental DNA (eDNA) is being rapidly adopted as a tool to detect rare animals. Quantitative PCR (qPCR) using probe-based chemistries may represent a particularly powerful tool because of the method’s sensitivity, specificity, and potential to quantify target DNA. However, there has been little work understanding the performance of these assays in the presence of closely related, sympatric taxa. If related species cause any cross-amplification or interference, false positives and negatives may be generated. These errors can be disastrous if false positives lead to overestimate the abundance of an endangered species or if false negatives prevent detection of an invasive species. In this study we test factors that influence the specificity and sensitivity of TaqMan MGB assays using co-occurring, closely related brook trout (Salvelinus fontinalis) and bull trout (S. confluentus) as a case study. We found qPCR to be substantially more sensitive than traditional PCR, with a high probability of detection at concentrations as low as 0.5 target copies/µl. We also found that number and placement of base pair mismatches between the Taqman MGB assay and non-target templates was important to target specificity, and that specificity was most influenced by base pair mismatches in the primers, rather than in the probe. We found that insufficient specificity can result in both false positive and false negative results, particularly in the presence of abundant related species. Our results highlight the utility of qPCR as a highly sensitive eDNA tool, and underscore the importance of careful assay design. PMID:23555689

  2. Robust detection of rare species using environmental DNA: the importance of primer specificity.

    PubMed

    Wilcox, Taylor M; McKelvey, Kevin S; Young, Michael K; Jane, Stephen F; Lowe, Winsor H; Whiteley, Andrew R; Schwartz, Michael K

    2013-01-01

    Environmental DNA (eDNA) is being rapidly adopted as a tool to detect rare animals. Quantitative PCR (qPCR) using probe-based chemistries may represent a particularly powerful tool because of the method's sensitivity, specificity, and potential to quantify target DNA. However, there has been little work understanding the performance of these assays in the presence of closely related, sympatric taxa. If related species cause any cross-amplification or interference, false positives and negatives may be generated. These errors can be disastrous if false positives lead to overestimate the abundance of an endangered species or if false negatives prevent detection of an invasive species. In this study we test factors that influence the specificity and sensitivity of TaqMan MGB assays using co-occurring, closely related brook trout (Salvelinus fontinalis) and bull trout (S. confluentus) as a case study. We found qPCR to be substantially more sensitive than traditional PCR, with a high probability of detection at concentrations as low as 0.5 target copies/µl. We also found that number and placement of base pair mismatches between the Taqman MGB assay and non-target templates was important to target specificity, and that specificity was most influenced by base pair mismatches in the primers, rather than in the probe. We found that insufficient specificity can result in both false positive and false negative results, particularly in the presence of abundant related species. Our results highlight the utility of qPCR as a highly sensitive eDNA tool, and underscore the importance of careful assay design.

  3. Endophytic Fungi in Species of Artemisia.

    PubMed

    Cosoveanu, Andreea; Cabrera, Raimundo

    2018-05-01

    The genus Artemisia , a collection of ~400 hardy herbaceous plant and shrub species, is an important resource contributing to chemistry, medicine, agriculture, industry, and ecology. Its communities of endophytic fungi have only recently begun to be explored. Summarized from studies conducted on the fungal endophytes in Artemisia species, both fungal phylogenetic diversity and the associated bioactivity was examined. Isolations from 14 species of Artemisia have led to 51 genera of fungal endophytes, 28 families, and 18 orders. Endophytes belonged mainly to Ascomycota , except for two taxa of Cantharellales and Sporidiobolales , one taxon of Mucoromycota , and one species of Oomycota . The mostly common families were Pleosporaceae , Trichocomaceae , Leptosphaeriaceae , and Botryosphaeriaceae (relative abundance = 14.89, 8.51, 7.14 and 6.38, respectively). In the search for bioactive metabolites, 27 novel compounds were characterized and 22 metabolites were isolated between 2006 and 2017. The first study on endophytic fungi isolated from species of Artemisia was published but 18 years ago. This summary of recently acquired data illustrates the considerable diversity of biological purposes addressed by fungal endophytes of Artemisia spp.

  4. Chirosurveillance: The use of native bats to detect invasive agricultural pests.

    PubMed

    Maslo, Brooke; Valentin, Rafael; Leu, Karen; Kerwin, Kathleen; Hamilton, George C; Bevan, Amanda; Fefferman, Nina H; Fonseca, Dina M

    2017-01-01

    Invasive insect pests cost the agricultural industry billions of dollars annually in crop losses. Timely detection of pests is critical for management efficiency. Innovative pest detection strategies, such as environmental DNA (eDNA) techniques, combined with efficient predators, maximize sampling resolution across space and time and may improve surveillance. We tested the hypothesis that temperate insectivorous bats can be important sentinels of agricultural insect pest surveillance. Specifically, we used a new high-sensitivity molecular assay for invasive brown marmorated stink bugs (Halyomorpha halys) to examine the extent to which big brown bats (Eptesicus fuscus) detect agricultural pests in the landscape. We documented consistent seasonal predation of stink bugs by big brown bats. Importantly, bats detected brown marmorated stink bugs 3-4 weeks earlier than the current standard monitoring tool, blacklight traps, across all sites. We highlight here the previously unrecognized potential ecosystem service of bats as agents of pest surveillance (or chirosurveillance). Additional studies examining interactions between other bat and insect pest species, coupled with comparisons of detectability among various conventional monitoring methods, are needed to verify the patterns extracted from this study. Ultimately, robust economic analyses will be needed to assess the cost-effectiveness of chirosurveillance as a standard strategy for integrated pest management.

  5. Diapause in ticks of the medically important Ixodes ricinus species complex

    PubMed Central

    Gray, Jeremy S.; Kahl, Olaf; Lane, Robert S.; Levin, Michael L.; Tsao, Jean I.

    2017-01-01

    Four members of the Ixodes ricinus species complex, Ixodes pacificus, Ixodes persulcatus, Ixodes ricinus and Ixodes scapularis, have, between them, a worldwide distribution within the northern hemisphere. They are responsible for the transmission of several animal and human pathogens, including the causal agents of Lyme borreliosis, tick-borne encephalitis, human granulocytic anaplasmosis and human babesiosis. Despite the importance of these ticks as vectors, the knowledge and understanding of the role that diapause plays in their complex life cycles are confused and incomplete. In view of the continuing geographic spread of these tick species, as well as the effects of climate change on vector-borne diseases, it is timely encourage research on diapause phenomena to improve understanding of their biology and of pathogen transmission dynamics. In our review we seek to clarify thinking on the topic and to address gaps in our knowledge that require the attention of researchers. PMID:27263092

  6. Phenological adjustment in arctic bird species: relative importance of snow melt and ecological factors

    USGS Publications Warehouse

    Liebezeit, Joseph R.; Gurney, K. E. B.; Budde, Michael E.; Zack, Steve; Ward, David H.

    2014-01-01

    Previous studies have documented advancement in clutch initiation dates (CIDs) in response to climate change, most notably for temperate-breeding passerines. Despite accelerated climate change in the Arctic, few studies have examined nest phenology shifts in arctic breeding species. We investigated whether CIDs have advanced for the most abundant breeding shorebird and passerine species at a long-term monitoring site in arctic Alaska. We pooled data from three additional nearby sites to determine the explanatory power of snow melt and ecological variables (predator abundance, green-up) on changes in breeding phenology. As predicted, all species (semipalmated sandpiper, Calidris pusilla, pectoral sandpiper, Calidris melanotos, red-necked phalarope, Phalaropus lobatus, red phalarope, Phalaropus fulicarius, Lapland longspur, Calcarius lapponicus) exhibited advanced CIDs ranging from 0.40 to 0.80 days/year over 9 years. Timing of snow melt was the most important variable in explaining clutch initiation advancement (“climate/snow hypothesis”) for four of the five species, while green-up was a much less important explanatory factor. We found no evidence that high predator abundances led to earlier laying dates (“predator/re-nest hypothesis”). Our results support previous arctic studies in that climate change in the cryosphere will have a strong impact on nesting phenology although factors explaining changes in nest phenology are not necessarily uniform across the entire Arctic. Our results suggest some arctic-breeding shorebird and passerine species are altering their breeding phenology to initiate nesting earlier enabling them to, at least temporarily, avoid the negative consequences of a trophic mismatch.

  7. Geographic distribution, evolution, and disease importance of species within the Neotropical Anopheles albitarsis Group (Diptera, Culicidae).

    PubMed

    Foley, Desmond H; Linton, Yvonne-Marie; Ruiz-Lopez, J Freddy; Conn, Jan E; Sallum, Maria Anice M; Póvoa, Marinete M; Bergo, Eduardo S; Oliveira, Tatiane M P; Sucupira, Izis; Wilkerson, Richard C

    2014-06-01

    The Anopheles albitarsis group of mosquitoes comprises eight recognized species and one mitochondrial lineage. Our knowledge of malaria vectorial importance and the distribution and evolution of these taxa is incomplete. We constructed ecological niche models (ENMs) for these taxa and used hypothesized phylogenetic relationships and ENMs to investigate environmental and ecological divergence associated with speciation events. Two major clades were identified, one north (Clade 1) and one south (Clade 2) of the Amazon River that likely is or was a barrier to mosquito movement. Clade 1 species occur more often in higher average temperature locations than Clade 2 species, and taxon splits within Clade 1 corresponded with a greater divergence of variables related to precipitation than was the case within Clade 2. Comparison of the ecological profiles of sympatric species and sister species support the idea that phylogenetic proximity is related to ecological similarity. Anopheles albitarsis I, An. janconnae, and An. marajoara ENMs had the highest percentage of their predicted suitable habitat overlapping distribution models of Plasmodium falciparum and P. vivax, and warrant additional studies of the transmission potential of these species. Phylogenetic proximity may be related to malaria vectorial importance within the Albitarsis Group. © 2014 The Society for Vector Ecology.

  8. Beyond landraces: developing improved germplasm resources for underutilized species - a case for Bambara groundnut.

    PubMed

    Aliyu, Siise; Massawe, Festo; Mayes, Sean

    2014-10-01

    The potential for underutilized crops (also known as minor, neglected or orphan crops) to improve food and nutrition security has been gaining prominence within the research community in recent years. This is due to their significance for diversified agricultural systems which is a necessary component of future agriculture to address food and nutritional security concerns posed by changing climate and a growing world population. Developing workable value chain systems for underutilized crop species, coupled with comparative trait studies with major crops, potentially allows us to identify suitable agricultural modalities for such species. Bambara groundnut (Vigna subterranea L. Verdc.), an underutilized leguminous species, is of interest for its reported high levels of drought tolerance in particular, which contributes to environmental resilience in semi-arid environments. Here, we present a synopsis of suitable strategies for the genetic improvement of Bambara groundnut as a guide to other underutilized crop species. Underutilized crops have often been adapted over thousands of years in particular regions by farmers and largely still exist as landraces with little or no genetic knowledge of key phenotypic traits. Breeding in these species is fundamentally different to breeding in major crops, where significant pedigree structures and history allow highly directed improvement. In this regard, deploying new integrated germplasm development approaches for variety development and genetic analysis, such as multi-parent advance generation inter-crosses (MAGIC), within breeding programmes of underutilized species will be important to be able to fully utilize such crops.

  9. DDT and Derivatives in Indicator Species of the Aquatic Food Web of Rangsit Agricultural Area, Central Thailand

    PubMed Central

    Siriwong, W.; Thirakhupt, K.; Sitticharoenchai, D.; Rohitrattana, J.; Thongkongowm, P.; Borjan, M.; Robson, M.

    2009-01-01

    The presence of DDT and derivatives in the food web of freshwater ecosystems of Rangsit agricultural area, Pathum Thani Province, Thailand were investigated from June 2004 to May 2007. By using gas chromatography (GC) with micro electron capture detector (μ ECD), DDT and derivatives in water, sediment, and fifteen indicator species i.e., 2 producers; Eichhornia crassipes and plankton (phyto- and zoo- plankton), an herbivore; Trichogaster microlepis (3) 3 omnivores; Trichogaster trichopterus, Oreochromis niloticus, and Puntius gonionotus, 6 carnivores; Channa striatus, Oxyeleotris marmoratus, Macrognathus siamensis, Parambassis siamensis, Anabas testudineus, and Pristolepis fasciatus, and 3 detritivores; Macrobrachium lanchesteri, Pomacea sp., and Filopaludina mertensi were measured. Results show low concentration levels (part per billion) of DDT & derivatives in each food web compartment i.e. water, sediment, aquatic plant, plankton, fish, and invertebrates. Magnification patterns, i.e. bioconcentration, bioaccumulation, and biomagnification, based on habitat and foraging behavior of selected freshwater species indicates that DDT & derivatives can accumulate and be magnified through the food chain from the lowest up to the highest trophic level. Therefore, the presence of residues and the evidence of magnification patterns can be observed as ecological indicators for evaluating ecological health risk. PMID:20161116

  10. Identifying 1st instar larvae for three forensically important blowfly species using "fingerprint" cuticular hydrocarbon analysis.

    PubMed

    Moore, Hannah E; Adam, Craig D; Drijfhout, Falko P

    2014-07-01

    Calliphoridae are known to be the most forensically important insects when it comes to establishing the minimum post mortem interval (PMImin) in criminal investigations. The first step in calculating the PMImin is to identify the larvae present to species level. Accurate identification which is conventionally carried out by morphological analysis is crucial because different insects have different life stage timings. Rapid identification in the immature larvae stages would drastically cut time in criminal investigations as it would eliminate the need to rear larvae to adult flies to determine the species. Cuticular hydrocarbon analysis on 1st instar larvae has been applied to three forensically important blowflies; Lucilia sericata, Calliphora vicina and Calliphora vomitoria, using gas chromatography-mass spectrometry (GC-MS) and principal component analysis (PCA). The results show that each species holds a distinct "fingerprint" hydrocarbon profile, allowing for accurate identification to be established in 1-day old larvae, when it can be challenging to apply morphological criteria. Consequently, this GC-MS based technique could accelerate and strengthen the identification process, not only for forensically important species, but also for other entomological samples which are hard to identify using morphological features. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  11. 7 CFR 1212.11 - Importer.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS..., PROMOTION, CONSUMER EDUCATION AND INDUSTRY INFORMATION ORDER Honey Packers and Importers Research, Promotion, Consumer Education, and Industry Information Order Definitions § 1212.11 Importer. “Importer” means any...

  12. Larval morphology of Atherigona orientalis (Schiner) (Diptera: Muscidae) -a species of sanitary and forensic importance.

    PubMed

    Grzywacz, Andrzej; Pape, Thomas

    2014-09-01

    Larval morphology is documented using both light and scanning electron microscopy for all three instars of the muscid fly Atherigona orientalis (Schiner), which is a species of known sanitary and forensic importance found in tropical and subtropical areas of all biogeographic regions. The unpaired sclerite in a form of a spicule is reported herein in the second and the third instar larvae. Occurrence of this sclerite was hitherto unknown in the second instar larvae of Muscidae and was only known from the third instar of several species, however not in a form of a spicule. Our study is the first report of the occurrence of the "sensory organ X" in all three larval instars of a species representing the family Muscidae. The bubble membrane, previously known only from third instar cyclorrhaphan larvae, is reported herein for the first time in the second instar. Characters allowing for discrimination of A. orientalis larvae from other forensically important Muscidae are summarised. Copyright © 2014 Elsevier B.V. All rights reserved.

  13. An Examination of Important Competencies Necessary for Vocational Agriculture in Selected Senior Secondary Students in Ijebu North Local Government Area, Nigeria

    ERIC Educational Resources Information Center

    Onanuga, Peter Abayomi

    2015-01-01

    The study analyses the relationship existing between some specified competencies important to vocational agriculture and preparation for occupation between male and female students in senior secondary schools in Ijebu-North Local Government Area, Nigeria. It adopted the classical design for change experiment (i.e. before and after measures) with…

  14. Francisella-Like Endosymbionts and Rickettsia Species in Local and Imported Hyalomma Ticks.

    PubMed

    Azagi, Tal; Klement, Eyal; Perlman, Gidon; Lustig, Yaniv; Mumcuoglu, Kosta Y; Apanaskevich, Dmitry A; Gottlieb, Yuval

    2017-09-15

    Hyalomma ticks (Acari: Ixodidae) are hosts for Francisella -like endosymbionts (FLE) and may serve as vectors of zoonotic disease agents. This study aimed to provide an initial characterization of the interaction between Hyalomma and FLE and to determine the prevalence of pathogenic Rickettsia in these ticks. Hyalomma marginatum , Hyalomma rufipes , Hyalomma dromedarii , Hyalomma aegyptium , and Hyalomma excavatum ticks, identified morphologically and molecularly, were collected from different hosts and locations representing the distribution of the genus Hyalomma in Israel, as well as from migratory birds. A high prevalence of FLE was found in all Hyalomma species (90.6%), as well as efficient maternal transmission of FLE (91.8%), and the localization of FLE in Malpighian tubules, ovaries, and salivary glands in H. marginatum Furthermore, we demonstrated strong cophylogeny between FLE and their host species. Contrary to FLE, the prevalence of Rickettsia ranged from 2.4% to 81.3% and was significantly different between Hyalomma species, with a higher prevalence in ticks collected from migratory birds. Using ompA gene sequences, most of the Rickettsia spp. were similar to Rickettsia aeschlimannii , while a few were similar to Rickettsia africae of the spotted fever group (SFG). Given their zoonotic importance, 249 ticks were tested for Crimean Congo hemorrhagic fever virus infection, and all were negative. The results imply that Hyalomma and FLE have obligatory symbiotic interactions, indicating a potential SFG Rickettsia zoonosis risk. A further understanding of the possible influence of FLE on Hyalomma development, as well as on its infection with Rickettsia pathogens, may lead to novel ways to control tick-borne zoonoses. IMPORTANCE This study shows that Francisella -like endosymbionts were ubiquitous in Hyalomma , were maternally transmitted, and cospeciated with their hosts. These findings imply that the interaction between FLE and Hyalomma is of an obligatory

  15. Species Sorting of Benthic Invertebrates in a Salinity Gradient – Importance of Dispersal Limitation

    PubMed Central

    Josefson, Alf B.

    2016-01-01

    The relative importance of environment and dispersal related processes for community assembly has attracted great interest over recent decades, but few empirical studies from the marine/estuarine realm have examined the possible effects of these two types of factors in the same system. Importance of these processes was investigated in a hypothetical metacommunity of benthic invertebrates in 16 micro-tidal estuaries connected to the same open sea area. The estuaries differed in size and connectivity to the open sea and represented a salinity gradient across the estuaries. The Elements of Metacommunity Structure (EMS) approach on estuary scale was complemented with a mechanistic variance partitioning approach on sample scale to disentangle effects of factors affecting assembly of three trait groups of species with different dispersivity. A quasi-Clementsian pattern was observed for all three traits, a likely response to some latent gradient. The primary axis in the pattern was most strongly related to gradients in estuary salinity and estuary entrance width and correlation with richness indicated nestedness only in the matrix of the most dispersive trait group. In the variance partitioning approach measures of turnover and nestedness between paired samples each from different estuaries were related to environmental distance in different gradients. Distance between estuaries was unimportant suggesting importance of factors characterizing the estuaries. While the high dispersive species mainly were sorted in the salinity gradient, apparently according to their tolerance ranges towards salinity, the two less dispersive traits were additionally affected by estuary entrance width and possibly also area. The results exemplify a mechanism of community assembly in the marine realm where the niche factor salinity in conjunction with differential dispersal structure invertebrates in a metacommunity of connected estuaries, and support the idea that dispersive species are more

  16. Sea Cucumber Glycosides: Chemical Structures, Producing Species and Important Biological Properties.

    PubMed

    Mondol, Muhammad Abdul Mojid; Shin, Hee Jae; Rahman, M Aminur; Islam, Mohamad Tofazzal

    2017-10-17

    Sea cucumbers belonging to echinoderm are traditionally used as tonic food in China and other Asian countries. They produce abundant biologically active triterpene glycosides. More than 300 triterpene glycosides have been isolated and characterized from various species of sea cucumbers, which are classified as holostane and nonholostane depending on the presence or absence of a specific structural unit γ(18,20)-lactone in the aglycone. Triterpene glycosides contain a carbohydrate chain up to six monosaccharide units mainly consisting of d-xylose, 3-O-methy-d-xylose, d-glucose, 3-O-methyl-d-glucose, and d-quinovose. Cytotoxicity is the common biological property of triterpene glycosides isolated from sea cucumbers. Besides cytotoxicity, triterpene glycosides also exhibit antifungal, antiviral and hemolytic activities. This review updates and summarizes our understanding on diverse chemical structures of triterpene glycosides from various species of sea cucumbers and their important biological activities. Mechanisms of action and structural-activity relationships (SARs) of sea cucumber glycosides are also discussed briefly.

  17. Sea Cucumber Glycosides: Chemical Structures, Producing Species and Important Biological Properties

    PubMed Central

    Mondol, Muhammad Abdul Mojid; Shin, Hee Jae; Rahman, M. Aminur; Islam, Mohamad Tofazzal

    2017-01-01

    Sea cucumbers belonging to echinoderm are traditionally used as tonic food in China and other Asian countries. They produce abundant biologically active triterpene glycosides. More than 300 triterpene glycosides have been isolated and characterized from various species of sea cucumbers, which are classified as holostane and nonholostane depending on the presence or absence of a specific structural unit γ(18,20)-lactone in the aglycone. Triterpene glycosides contain a carbohydrate chain up to six monosaccharide units mainly consisting of d-xylose, 3-O-methy-d-xylose, d-glucose, 3-O-methyl-d-glucose, and d-quinovose. Cytotoxicity is the common biological property of triterpene glycosides isolated from sea cucumbers. Besides cytotoxicity, triterpene glycosides also exhibit antifungal, antiviral and hemolytic activities. This review updates and summarizes our understanding on diverse chemical structures of triterpene glycosides from various species of sea cucumbers and their important biological activities. Mechanisms of action and structural–activity relationships (SARs) of sea cucumber glycosides are also discussed briefly. PMID:29039760

  18. United States Department of Agriculture-Agricultural Research Service research on managing insect resistance to insecticides.

    PubMed

    Elzen, Gary W; Hardee, Dick D

    2003-01-01

    Insecticide resistance has developed within many classes of pesticide, and over 500 species of insects and mites are resistant to one or more insecticides. Insecticide resistance and the consequent losses of food and fiber caused by failure to control insect and mite pests causes economic losses of several billion dollars worldwide each year. It is the goal of insect resistance management (IRM) to preserve useful pesticides by slowing, preventing or reversing development of resistance in pests. Important aspects of this goal are understanding the development of resistance and monitoring to determine ways to prevent its development. We describe programs specific to missions of the US Department of Agriculture, Agricultural Research Service, which are designed to characterize insecticide resistance in insects and mites with the goal of managing pests in an ecologically acceptable manner. Resistance management of cotton, potatoes, vegetables, melons, ornamentals, greenhouse crops, corn, stored grains, livestock, honeybees and mites, as well as management of transgenic crops are evaluated. We conclude that IRM is a vital part of stewardship of any pest management product and must be a combined effort of manufacturers, growers, consultants, extension services and grower organizations, working closely with regulators, to achieve logistically and economically feasible systems that prolong the effectiveness of all pest-control products.

  19. Human myiasis in New Zealand: imported and indigenously-acquired cases: the species of concern and clinical aspects.

    PubMed

    Derraik, Jose G B; Heath, Allen C G; Rademaker, Marius

    2010-09-10

    Reports of myiasis in humans in New Zealand are somewhat rare, and little attention has been paid to this issue in the local medical literature. A number of Diptera (fly) families present in New Zealand have been associated with cases of human myiasis: Calliphoridae (7 species), Fanniidae (2 species), Muscidae (3 species), Oestridae (4 species), Phoridae (3 species), Psychodidae (1 species), Sarcophagidae (2 species), Stratiomyidae (1 species) and Syrphidae (1 species). Despite these numbers, there have only been 6 published records and we obtained further 16 unpublished reports of myiasis acquired in New Zealand. Records of imported myiasis in humans are also rare, with only 2 published and 6 unpublished cases obtained. As many medical practitioners are unaware of myiasis or encounter it rarely, we provide a brief discussion of the clinical features and treatment.

  20. The importance of traditional orchards for breeding birds: The preliminary study on Central European example

    NASA Astrophysics Data System (ADS)

    Kajtoch, Łukasz

    2017-01-01

    Orchards are parts of agriculture and apart from their economic role they may preserve biodiversity in highly transformed farmlands. An increasing intensity of orchards management is known to be threat for some species, especially pollinators and birds. On the other hand, the biodiversity of abandoned orchards was hardly investigated. Here, I present a survey of orchards in Poland to estimate how bird's diversities differ in response to the intensity of orchards management. In 2014, 66 orchards of three types - abandoned, extensively and intensively managed - were investigated. Bird species' richness and abundance were found to be highest in abandoned orchards but overall bird diversity and species composition in abandoned did not differ from these found in extensively managed orchards. In abandoned and extensively managed orchards, hollow-dwellers and insectivores (with some rare old-forest associated species) dominated, whereas in intensively managed orchards the most diverse were ground-dwellers. Among the several selected environmental features, the highest impact on bird diversity was related to the tree diversity, abundance of older trees, presence of multilayer understory and heterogeneous surrounding. The preliminary study point that traditional orchards could play a important role for wood-dwelling species in agriculture and because of that the removal or replacement of all traditional orchards by intensively managed orchards should be avoided and needs of orchard protection should be implemented into Agri-Environmental Schemes/High Nature Value farming systems and possibly also into habitat directive of EU. Unfortunately, the number of abandoned and extensively managed orchards is declining from agricultural landscapes, and traditional orchards are replaced by conventional fruit plantations.

  1. Assessing Landscape Constraints on Species Abundance: Does the Neighborhood Limit Species Response to Local Habitat Conservation Programs?

    PubMed Central

    Jorgensen, Christopher F.; Powell, Larkin A.; Lusk, Jeffery J.; Bishop, Andrew A.; Fontaine, Joseph J.

    2014-01-01

    Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and often fail to consider the importance of ecological mechanisms that act across spatial scales. We located survey sites across southern Nebraska, USA and conducted point counts to estimate Ring-necked Pheasant abundance, an economically important species to the region, while simultaneously quantifying landscape effects using a geographic information system. To identify suitable areas for allocating limited management resources, we assessed land cover relationships to our counts using a Bayesian binomial-Poisson hierarchical model to construct predictive Species Distribution Models of relative abundance. Our results indicated that landscape scale land cover variables severely constrained or, alternatively, facilitated the positive effects of local land management for Ring-necked Pheasants. PMID:24918779

  2. Assessing landscape constraints on species abundance: Does the neighborhood limit species response to local habitat conservation programs?

    USGS Publications Warehouse

    Jorgensen, Christopher F.; Powell, Larkin A.; Lusk, Jeffrey J.; Bishop, Andrew A.; Fontaine, Joseph J.

    2014-01-01

    Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and often fail to consider the importance of ecological mechanisms that act across spatial scales. We located survey sites across southern Nebraska, USA and conducted point counts to estimate Ring-necked Pheasant abundance, an economically important species to the region, while simultaneously quantifying landscape effects using a geographic information system. To identify suitable areas for allocating limited management resources, we assessed land cover relationships to our counts using a Bayesian binomial-Poisson hierarchical model to construct predictive Species Distribution Models of relative abundance. Our results indicated that landscape scale land cover variables severely constrained or, alternatively, facilitated the positive effects of local land management for Ring-necked Pheasants.

  3. Evaluating ecoregion-based height-diameter relationships of five economically important Appalachian hardwood species in West Virginia

    Treesearch

    John R. Brooks; Harry V., Jr. Wiant

    2007-01-01

    Five economically important Appalachian hardwood species were selected from five ecoregions in West Virginia. A nonlinear extra sum of squares procedure was employed to test whether the height-diameter relationships, based on measurements from the 2000 inventory from West Virginia, were significantly different at the ecoregion level. For all species examined, the null...

  4. Impact of grassland management regimes on bacterial endophyte diversity differs with grass species.

    PubMed

    Wemheuer, F; Wemheuer, B; Kretzschmar, D; Pfeiffer, B; Herzog, S; Daniel, R; Vidal, S

    2016-04-01

    Most plant species are colonized by endophytic bacteria. Despite their importance for plant health and growth, the response of these bacteria to grassland management regimes is still not understood. Hence, we investigated the bacterial community structure in three agricultural important grass species Dactylis glomerata L., Festuca rubra L. and Lolium perenne L. with regard to fertilizer application and different mowing frequencies. For this purpose, above-ground plant material was collected from the Grassland Management Experiment (GrassMan) in Germany in September 2010 and 2011. DNA was extracted from surface-sterilized plant tissue and subjected to 16S rRNA gene PCRs. Endophytic community structures were assessed by denaturing gradient gel electrophoresis (DGGE)-based analysis of obtained PCR products. DGGE fingerprints revealed that fertilizer application significantly altered the endophytic communities in L. perenne and F. rubra but not in D. glomerata. Although no direct effect of mowing was observed, mowing frequencies in combination with fertilizer application had a significant impact on endophyte bacterial community structures. However, this effect was not observed for all three grass species in both years. Therefore, our results showed that management regimes changed the bacterial endophyte communities, but this effect was plant-specific and varied over time. Endophytic bacteria play an important role in plant health and growth. However, studies addressing the influence of grassland management regimes on these bacteria in above-ground plant parts are still missing. In this study, we present first evidence that fertilizer application significantly impacted bacterial community structures in three agricultural important grass species, whereas mowing had only a minor effect. Moreover, this effect was plant-specific and thus not visible for all grass species in each year. Consequently, this study sheds new light into the complex interaction of microbes and

  5. Climate change - Agricultural land use - Food security

    NASA Astrophysics Data System (ADS)

    Nagy, János; Széles, Adrienn

    2015-04-01

    In Hungary, plougland decreased to 52% of its area by the time of political restructuring (1989) in comparison with the 1950s. Forested areas increased significantly (18%) and lands withdrawn from agricultural production doubled (11%). For today, these proportions further changed. Ploughlands reduced to 46% and forested areas further increased (21%) in 2013. The most significat changes were observed in the proportion of lands withdrawn from agricultural production which increased to 21%. Temperature in Hungary increased by 1°C during the last century and predictions show a further 2.6 °C increase by 2050. The yearly amount of precipitation significantly decreased from 640 mm to 560 mm with a more uneven temporal distribution. The following aspects can be considered in the correlation between climate change and agriculture: a) impact of agriculture on climate, b) future impact of climate change on agriculture and food supply, c) impact of climate change on food security. The reason for the significant change of climate is the accumulation of greenhouse gases (GHG) which results from anthropological activities. Between 2008 and 2012, Hungary had to reduce its GHG emission by 6% compared to the base period between 1985-1987. At the end of 2011, Hungarian GHG emission was 43.1% lower than that of the base period. The total gross emission was 66.2 million CO2 equivalent, while the net emission which also includes land use, land use change and forestry was 62.8 million tons. The emission of agriculture was 8.8 million tons (OMSZ, 2013). The greatest opportunity to reduce agricultural GHG emission is dinitrogen oxides which can be significantly mitigated by the smaller extent and more efficient use of nitrogen-based fertilisers (precision farming) and by using biomanures produced from utilised waste materials. Plant and animal species which better adapt to extreme weather circumstances should be bred and maintained, thereby making an investment in food security. Climate

  6. Saprinus planiusculus (Motschulsky' 1849) (Coleoptera: Histeridae), a beetle species of forensic importance in Khuzetan Province, Iran.

    PubMed

    Fakoorziba, M R; Assareh, M; Keshavarzi, D; Soltani, A; Moemenbellah-Fard, M D; Zarenezhad, M

    2017-01-01

    Medico legal forensic entomology is the science and study of cadaveric arthropods related to criminal investigations. The study of beetles is particularly important in forensic cases. This can be important in determining the time of death and also obtain qualitative information about the location of the crime. The aim of this study was to introduce the Saprinus planiusculus on a rat carrion as a beetle species of forensic importance in Khuzestan province. This study was carried out using a laboratory bred rat (Wistar rat) as a model for human decomposition. The rat was killed by contusion and placed in a location adjacent to the Karun River. Observations and collections of beetles were made daily during May to July 2015. Decomposition time for rat carrion lasted 38 days and S. planiusculus was seen in the fresh to post decay stages of body decomposition and the largest number of this species caught in the decay stage. The species of beetle found in this case could be used in forensic investigations, particularly during the warm season in the future.

  7. Critical review of the emerging research evidence on agricultural biodiversity, diet diversity, and nutritional status in low- and middle-income countries

    PubMed Central

    Jones, Andrew D

    2017-01-01

    The declining diversity of agricultural production and food supplies worldwide may have important implications for global diets. The primary objective of this review is to assess the nature and magnitude of the associations of agricultural biodiversity with diet quality and anthropometric outcomes in low- and middle-income countries. A comprehensive review of 5 databases using a priori exclusion criteria and application of a systematic, qualitative analysis to the findings of identified studies revealed that agricultural biodiversity has a small but consistent association with more diverse household- and individual-level diets, although the magnitude of this association varies with the extent of existing diversification of farms. Greater on-farm crop species richness is also associated with small, positive increments in young child linear stature. Agricultural diversification may contribute to diversified diets through both subsistence- and income-generating pathways and may be an important strategy for improving diets and nutrition outcomes in low- and middle-income countries. Six research priorities for future studies of the influence of agricultural biodiversity on nutrition outcomes are identified based on gaps in the research literature. PMID:29028270

  8. Ethics and Agricultural Education: Determining Needs.

    ERIC Educational Resources Information Center

    Foster, Billye

    2000-01-01

    In a three-round Delphi (n=197, 109, 75), secondary teachers (61.5% in agriculture) identified important ethical issues regarding land and water use: conversion of agricultural land for urban development, water rights control, and public land used for agriculture. Nearly all addressed ethical issues in class. (SK)

  9. Perceived damage and areas of needed research for wildlife pests of California agriculture.

    PubMed

    Baldwin, Roger A; Salmon, Terrell P; Schmidt, Robert H; Timm, Robert M

    2014-06-01

    Many wildlife species cause extensive damage to a variety of agricultural commodities in California, with estimates of damage in the hundreds of millions annually. Given the limited availability of resources to solve all human-wildlife conflicts, we should focus management efforts on issues that provide the greatest benefit to agricultural commodities in California. This survey provides quantitative data on research needs to better guide future efforts in developing more effective, practical and appropriate methods for managing these species. We found that ground squirrels, pocket gophers, birds, wild pigs, coyotes and voles were the most common agricultural wildlife pest species in California. The damage caused by these species could be quite high, but varied by agricultural commodity. For most species, common forms of damage included loss of crop production and direct death of the plant, although livestock depredation was the greatest concern for coyotes. Control methods used most frequently and those deemed most effective varied by pest species, although greater advancements in control methods were listed as a top research priority for all species. Collectively, the use of toxicants, biocontrol and trapping were the most preferred methods for control, but this varied by species. In general, integrated pest management practices were used to control wildlife pests, with a special preference for those approaches that were efficacious and quick and inexpensive to apply. This information and survey design should be useful in establishing research and management priorities for wildlife pest species in California and other similar regions. © 2013 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

  10. Are agricultural and natural sources of bio-products important for modern regenerative medicine? A review.

    PubMed

    Nowacki, Maciej; Nowacka, Katarzyna; Kloskowski, Tomasz; Pokrywczyńska, Marta; Tyloch, Dominik; Rasmus, Marta; Warda, Karolina; Drewa, Tomasz

    2017-05-11

    [b] Abstract Introduction and objectives[/b]. As tissue engineering and regenerative medicine have continued to evolve within the field of biomedicine, the fundamental importance of bio-products has become increasingly apparent. This true not only in cases where they are derived directly from the natural environment, but also when animals and plants are specially bred and cultivated for their production. [b]Objective.[/b] The study aims to present and assess the global influence and importance of selected bio-products in current regenerative medicine via a broad review of the existing literature. In particular, attention is paid to the matrices, substances and grafts created from plants and animals which could potentially be used in experimental and clinical regeneration, or in reconstructive procedures. [b]Summary.[/b] Evolving trends in agriculture are likely to play a key role in the future development of a number of systemic and local medical procedures within tissue engineering and regenerative medicine. This is in addition to the use of bio-products derived from the natural environment which are found to deliver positive results in the treatment of prospective patients.

  11. Are Photosynthetic Characteristics and Energetic Cost Important Invasive Traits for Alien Sonneratia Species in South China?

    PubMed

    Li, Feng-Lan; Zan, Qi-Jie; Hu, Zheng-Yu; Shin, Paul-K S; Cheung, Siu-Gin; Wong, Yuk-Shan; Tam, Nora Fung-Yee; Lei, An-Ping

    2016-01-01

    A higher photosynthesis and lower energetic cost are recognized as important characteristics for invasive species, but whether these traits are also important for the ability of alien mangrove species to become invasive has seldom been reported. A microcosm study was conducted to compare the photosynthetic characteristics, energetic cost indices and other growth traits between two alien species (Sonneratia apetala and S. caseolaris) and four native mangrove species over four seasons in a subtropical mangrove nature reserve in Shenzhen, South China. The aim of the study was to evaluate the invasive potential of Sonneratia based on these physiological responses. The annual average net photosynthetic rate (Pn), stomatal conductance (Gs) and total carbon assimilation per unit leaf area (Atotal) of the two alien Sonneratia species were significantly higher than the values of the native mangroves. In contrast, the opposite results were obtained for the leaf construction cost (CC) per unit dry mass (CCM) and CC per unit area (CCA) values. The higher Atotal and lower CC values resulted in a 72% higher photosynthetic energy-use efficiency (PEUE) for Sonneratia compared to native mangroves, leading to a higher relative growth rate (RGR) of the biomass and height of Sonneratia with the respective values being 51% and 119% higher than those of the native species. Higher photosynthetic indices for Sonneratia compared to native species were found in all seasons except winter, whereas lower CC values were found in all four seasons. The present findings reveal that alien Sonneratia species may adapt well and become invasive in subtropical mangrove wetlands in Shenzhen due to their higher photosynthetic characteristics coupled with lower costs in energy use, leading to a higher PEUE. The comparison of these physiological responses between S. apetala and S. caseolaris reveal that the former species is more invasive than the latter one, thus requiring more attention in future.

  12. Are Photosynthetic Characteristics and Energetic Cost Important Invasive Traits for Alien Sonneratia Species in South China?

    PubMed Central

    Li, Feng-Lan; Zan, Qi-Jie; Hu, Zheng-Yu; Shin, Paul-K. S.; Cheung, Siu-Gin; Wong, Yuk-Shan; Tam, Nora Fung-Yee; Lei, An-Ping

    2016-01-01

    A higher photosynthesis and lower energetic cost are recognized as important characteristics for invasive species, but whether these traits are also important for the ability of alien mangrove species to become invasive has seldom been reported. A microcosm study was conducted to compare the photosynthetic characteristics, energetic cost indices and other growth traits between two alien species (Sonneratia apetala and S. caseolaris) and four native mangrove species over four seasons in a subtropical mangrove nature reserve in Shenzhen, South China. The aim of the study was to evaluate the invasive potential of Sonneratia based on these physiological responses. The annual average net photosynthetic rate (Pn), stomatal conductance (Gs) and total carbon assimilation per unit leaf area (Atotal) of the two alien Sonneratia species were significantly higher than the values of the native mangroves. In contrast, the opposite results were obtained for the leaf construction cost (CC) per unit dry mass (CCM) and CC per unit area (CCA) values. The higher Atotal and lower CC values resulted in a 72% higher photosynthetic energy-use efficiency (PEUE) for Sonneratia compared to native mangroves, leading to a higher relative growth rate (RGR) of the biomass and height of Sonneratia with the respective values being 51% and 119% higher than those of the native species. Higher photosynthetic indices for Sonneratia compared to native species were found in all seasons except winter, whereas lower CC values were found in all four seasons. The present findings reveal that alien Sonneratia species may adapt well and become invasive in subtropical mangrove wetlands in Shenzhen due to their higher photosynthetic characteristics coupled with lower costs in energy use, leading to a higher PEUE. The comparison of these physiological responses between S. apetala and S. caseolaris reveal that the former species is more invasive than the latter one, thus requiring more attention in future. PMID

  13. Meeting the Vitamin A Requirement: The Efficacy and Importance of β-Carotene in Animal Species

    PubMed Central

    2016-01-01

    Vitamin A is essential for life in all vertebrate animals. Vitamin A requirement can be met from dietary preformed vitamin A or provitamin A carotenoids, the most important of which is β-carotene. The metabolism of β-carotene, including its intestinal absorption, accumulation in tissues, and conversion to vitamin A, varies widely across animal species and determines the role that β-carotene plays in meeting vitamin A requirement. This review begins with a brief discussion of vitamin A, with an emphasis on species differences in metabolism. A more detailed discussion of β-carotene follows, with a focus on factors impacting bioavailability and its conversion to vitamin A. Finally, the literature on how animals utilize β-carotene is reviewed individually for several species and classes of animals. We conclude that β-carotene conversion to vitamin A is variable and dependent on a number of factors, which are important to consider in the formulation and assessment of diets. Omnivores and herbivores are more efficient at converting β-carotene to vitamin A than carnivores. Absorption and accumulation of β-carotene in tissues vary with species and are poorly understood. More comparative and mechanistic studies are required in this area to improve the understanding of β-carotene metabolism. PMID:27833936

  14. 7 CFR 944.106 - Grapefruit import regulation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing..., Agricultural Marketing Service, United States Department of Agriculture, is designated as the governmental... Agricultural Marketing Agreement Act of 1937, as amended [7 U.S.C. 601-674], and Part 944—Fruits; Import...

  15. On the rebound: soil organic carbon stocks can bounce back to near forest levels when agroforests replace agriculture in southern India

    NASA Astrophysics Data System (ADS)

    Hombegowda, H. C.; van Straaten, O.; Köhler, M.; Hölscher, D.

    2016-01-01

    Tropical agroforestry has an enormous potential to sequester carbon while simultaneously producing agricultural yields and tree products. The amount of soil organic carbon (SOC) sequestered is influenced by the type of the agroforestry system established, the soil and climatic conditions, and management. In this regional-scale study, we utilized a chronosequence approach to investigate how SOC stocks changed when the original forests are converted to agriculture, and then subsequently to four different agroforestry systems (AFSs): home garden, coffee, coconut and mango. In total we established 224 plots in 56 plot clusters across 4 climate zones in southern India. Each plot cluster consisted of four plots: a natural forest reference, an agriculture reference and two of the same AFS types of two ages (30-60 years and > 60 years). The conversion of forest to agriculture resulted in a large loss the original SOC stock (50-61 %) in the top meter of soil depending on the climate zone. The establishment of home garden and coffee AFSs on agriculture land caused SOC stocks to rebound to near forest levels, while in mango and coconut AFSs the SOC stock increased only slightly above the agriculture SOC stock. The most important variable regulating SOC stocks and its changes was tree basal area, possibly indicative of organic matter inputs. Furthermore, climatic variables such as temperature and precipitation, and soil variables such as clay fraction and soil pH were likewise all important regulators of SOC and SOC stock changes. Lastly, we found a strong correlation between tree species diversity in home garden and coffee AFSs and SOC stocks, highlighting possibilities to increase carbon stocks by proper tree species assemblies.

  16. On the rebound: soil organic carbon stocks can bounce back to near forest levels when agroforests replace agriculture in southern India

    NASA Astrophysics Data System (ADS)

    Hombegowda, H. C.; van Straaten, O.; Köhler, M.; Hölscher, D.

    2015-08-01

    Tropical agroforestry has an enormous potential to sequester carbon while simultaneously producing agricultural yields and tree products. The amount of soil organic carbon (SOC) sequestered is however influenced by the type of the agroforestry system established, the soil and climatic conditions and management. In this regional scale study, we utilized a chronosequence approach to investigate how SOC stocks changed when the original forests are converted to agriculture, and then subsequently to four different agroforestry systems (AFSs): homegarden, coffee, coconut and mango. In total we established 224 plots in 56 plot clusters across four climate zones in southern India. Each plot cluster consisted of four plots: a natural forest reference plot, an agriculture reference and two of the same AFS types of two ages (30-60 years and > 60 years). The conversion of forest to agriculture resulted in a large loss the original SOC stock (50-61 %) in the top meter of soil depending on the climate zone. The establishment of homegarden and coffee AFSs on agriculture land caused SOC stocks to rebound to near forest levels, while in mango and coconut AFSs the SOC stock increased only slightly above the agriculture stock. The most important variable regulating SOC stocks and its changes was tree basal area, possibly indicative of organic matter inputs. Furthermore, climatic variables such as temperature and precipitation, and soil variables such as clay fraction and soil pH were likewise all important regulators of SOC and SOC stock changes. Lastly, we found a strong correlation between tree species diversity in homegarden and coffee AFSs and SOC stocks, highlighting possibilities to increase carbon stocks by proper tree species assemblies.

  17. Evaluation of functional substances in the selected food materials for space agriculture

    NASA Astrophysics Data System (ADS)

    Tomita-Yokotani, Kaori; Kimura, Yasuko; Yamashita, Masamichi; Kimura, Shunta; Sato, Seigo; Katoh, Hiroshi; Abe, Yusuke; Ajioka, Reiko

    We have been studying the useful life-support system in closed bio-ecosystem for space agriculture. We have already proposed the several species as food material, such as Nostoc sp. HK-01 and Prunnus sp., cyanobacterium and Japanese cherry tree, respectively. The cyanobacterium, Nostoc sp Hk-01, has high tolerances to several space environment. Furthermore, the woody plant materials have useful utilization elements in our habitation environment. The studies of woody plants under a space-environment in the vegetable kingdom have a high contribution to the study of various and exotic environmental responses, too. We have already found that they can produce the important functional substances for human. Here, we will show the evaluation of functional substances in the selected food materials under the possible conditions for space agriculture after cooking.

  18. Correlation between agricultural markets in dynamic perspective-Evidence from China and the US futures markets

    NASA Astrophysics Data System (ADS)

    Jia, Rui-Lin; Wang, Dong-Hua; Tu, Jing-Qing; Li, Sai-Ping

    2016-12-01

    Emerging as the earliest futures markets, agricultural futures markets play an important role in risk aversion and price discovery. With the integration of global economy, the linkage between domestic and international futures markets becomes closer than ever. By using the thermal optimal path (TOP) method, this paper selects soybean, corn and wheat as the representatives to study the dynamic lead-lag relationship between the Chinese and American markets in both returns and volatility. The results indicate that: (1) For the futures return, different kinds of agricultural futures lead-lag relationship between China and the US varied before 2014 both in direction and order in different time periods. However, China leads the US for all the three kinds we study after 2014. (2) Agricultural commodities subject to less import restrictions and government regulations in China such as soybean are more susceptible to the fluctuations from the international markets. On the other hand, lower foreign trade openness and more government regulation species such as wheat are less affected by fluctuations from outside. (3) The volatility transmission from the US to China wheat futures market takes longer time than soybean, which suggests that China's soybean futures market is more closely linked to the international agricultural futures market than wheat.

  19. Habitat restoration promotes pollinator persistence and colonization in intensively managed agriculture.

    PubMed

    M'Gonigle, Leithen K; Ponisio, Lauren C; Cutler, Kerry; Kremen, Claire

    2015-09-01

    Widespread evidence of pollinator declines has led to policies supporting habitat restoration including in agricultural landscapes. Yet, little is yet known about the effectiveness of these restoration techniques for promoting stable populations and communities of pollinators, especially in intensively managed agricultural landscapes. Introducing floral resources, such as flowering hedgerows, to enhance intensively cultivated agricultural landscapes is known to increase the abundances of native insect pollinators in and around restored areas. Whether this is a result of local short-term concentration at flowers or indicative of true increases in the persistence and species richness of these communities remains unclear. It is also unknown whether this practice supports species of conservation concern (e.g., those with more specialized dietary requirements). Analyzing occupancies of native bees and syrphid flies from 330 surveys across 15 sites over eight years, we found that hedgerow restoration promotes rates of between-season persistence and colonization as compared with unrestored field edges. Enhanced persistence and colonization, in turn, led to the formation of more species-rich communities. We also find that hedgerows benefit floral resource specialists more than generalists, emphasizing the value of this restoration technique for conservation in agricultural landscapes.

  20. Sweat bees on hot chillies: provision of pollination services by native bees in traditional slash-and-burn agriculture in the Yucatán Peninsula of tropical Mexico.

    PubMed

    Landaverde-González, Patricia; Quezada-Euán, José Javier G; Theodorou, Panagiotis; Murray, Tomás E; Husemann, Martin; Ayala, Ricardo; Moo-Valle, Humberto; Vandame, Rémy; Paxton, Robert J

    2017-12-01

    Traditional tropical agriculture often entails a form of slash-and-burn land management that may adversely affect ecosystem services such as pollination, which are required for successful crop yields. The Yucatán Peninsula of Mexico has a >4000 year history of traditional slash-and-burn agriculture, termed 'milpa'. Hot 'Habanero' chilli is a major pollinator-dependent crop that nowadays is often grown in monoculture within the milpa system.We studied 37 local farmers' chilli fields (sites) to evaluate the effects of landscape composition on bee communities. At 11 of these sites, we undertook experimental pollination treatments to quantify the pollination of chilli. We further explored the relationships between landscape composition, bee communities and pollination service provision to chilli.Bee species richness, particularly species of the family Apidae, was positively related to the amount of forest cover. Species diversity decreased with increasing proportion of crop land surrounding each sampling site. Sweat bees of the genus Lasioglossum were the most abundant bee taxon in chilli fields and, in contrast to other bee species, increased in abundance with the proportion of fallow land, gardens and pastures which are an integral part of the milpa system.There was an average pollination shortfall of 21% for chilli across all sites; yet the shortfall was unrelated to the proportion of land covered by crops. Rather, chilli pollination was positively related to the abundance of Lasioglossum bees, probably an important pollinator of chilli, as well indirectly to the proportion of fallow land, gardens and pastures that promote Lasioglossum abundance. Synthesis and applications . Current, low-intensity traditional slash-and-burn ( milpa ) agriculture provides Lasioglossum spp. pollinators for successful chilli production; fallow land, gardens and pasture therefore need to be valued as important habitats for these and related ground-nesting bee species. However, the

  1. DNA Microarray Detection of 18 Important Human Blood Protozoan Species

    PubMed Central

    Chen, Jun-Hu; Feng, Xin-Yu; Chen, Shao-Hong; Cai, Yu-Chun; Lu, Yan; Zhou, Xiao-Nong; Chen, Jia-Xu; Hu, Wei

    2016-01-01

    Background Accurate detection of blood protozoa from clinical samples is important for diagnosis, treatment and control of related diseases. In this preliminary study, a novel DNA microarray system was assessed for the detection of Plasmodium, Leishmania, Trypanosoma, Toxoplasma gondii and Babesia in humans, animals, and vectors, in comparison with microscopy and PCR data. Developing a rapid, simple, and convenient detection method for protozoan detection is an urgent need. Methodology/Principal Findings The microarray assay simultaneously identified 18 species of common blood protozoa based on the differences in respective target genes. A total of 20 specific primer pairs and 107 microarray probes were selected according to conserved regions which were designed to identify 18 species in 5 blood protozoan genera. The positive detection rate of the microarray assay was 91.78% (402/438). Sensitivity and specificity for blood protozoan detection ranged from 82.4% (95%CI: 65.9% ~ 98.8%) to 100.0% and 95.1% (95%CI: 93.2% ~ 97.0%) to 100.0%, respectively. Positive predictive value (PPV) and negative predictive value (NPV) ranged from 20.0% (95%CI: 2.5% ~ 37.5%) to 100.0% and 96.8% (95%CI: 95.0% ~ 98.6%) to 100.0%, respectively. Youden index varied from 0.82 to 0.98. The detection limit of the DNA microarrays ranged from 200 to 500 copies/reaction, similar to PCR findings. The concordance rate between microarray data and DNA sequencing results was 100%. Conclusions/Significance Overall, the newly developed microarray platform provides a convenient, highly accurate, and reliable clinical assay for the determination of blood protozoan species. PMID:27911895

  2. 7 CFR 944.550 - Kiwifruit import regulation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing... Inspection Service, Fruit and Vegetable Division, Agricultural Marketing Service, United States Department of....550 Kiwifruit import regulation. (a) Pursuant to section 8e of the Agricultural Marketing Agreement...

  3. Bumble bees (Hymenoptera: Apidae: Bombus spp.) of interior Alaska: Species composition, distribution, seasonal biology, and parasites

    USDA-ARS?s Scientific Manuscript database

    Despite the ecological and agricultural significance of bumble bees in Alaska, very little is known and published about this important group at the regional level. The objectives of this study were to provide baseline data on species composition, distribution, seasonal biology, and parasites of the ...

  4. Biological control of weeds: research by the United States Department of Agriculture-Agricultural Research Service: selected case studies.

    PubMed

    Quimby, Paul C; DeLoach, C Jack; Wineriter, Susan A; Goolsby, John A; Sobhian, Rouhollah; Boyette, C Douglas; Abbas, Hamed K

    2003-01-01

    Research by the USDA-Agricultural Research Service (ARS) on biological control of weeds has been practiced for many years because of its inherent ecological and economic advantages. Today, it is further driven by ARS adherence to Presidential Executive Order 13112 (3 February 1999) on invasive species and to USDA-ARS policy toward developing technology in support of sustainable agriculture with reduced dependence on non-renewable petrochemical resources. This paper reports examples or case studies selected to demonstrate the traditional or classical approach for biological control programs using Old World arthropods against Tamarix spp, Melaleuca quinquenervia (Cav) ST Blake and Galium spurium L/G aparine L, and the augmentative approach with a native plant pathogen against Pueraria lobata Ohwi = P montana. The examples illustrated various conflicts of interest with endangered species and ecological complexities of arthropods with associated microbes such as nematodes.

  5. Preface: Biocatalysis and Agricultural Biotechnology

    USDA-ARS?s Scientific Manuscript database

    This book was assembled with the intent of bringing together current advances and in-depth reviews of biocatalysis and agricultural biotechnology with emphasis on bio-based products and agricultural biotechnology. Recent energy and food crises point out the importance of bio-based products from ren...

  6. Do Riparian Buffers Protect Stream Invertebrate Communities in South American Atlantic Forest Agricultural Areas?

    PubMed

    Hunt, L; Marrochi, N; Bonetto, C; Liess, M; Buss, D F; Vieira da Silva, C; Chiu, M-C; Resh, V H

    2017-12-01

    We investigated the influence and relative importance of insecticides and other agricultural stressors in determining variability in invertebrate communities in small streams in intensive soy-production regions of Brazil and Paraguay. In Paraguay we sampled 17 sites on tributaries of the Pirapó River in the state of Itapúa and in Brazil we sampled 18 sites on tributaries of the San Francisco River in the state of Paraná. The riparian buffer zones generally contained native Atlantic forest remnants and/or introduced tree species at various stages of growth. In Brazil the stream buffer width was negatively correlated with sediment insecticide concentrations and buffer width was found to have moderate importance in mitigating effects on some sensitive taxa such as mayflies. However, in both regions insecticides had low relative importance in explaining variability in invertebrate communities, while various habitat parameters were more important. In Brazil, the percent coverage of soft depositional sediment in streams was the most important agriculture-related explanatory variable, and the overall stream-habitat score was the most important variable in Paraguay streams. Paraguay and Brazil both have laws requiring forested riparian buffers. The ample forested riparian buffer zones typical of streams in these regions are likely to have mitigated the effects of pesticides on stream invertebrate communities. This study provides evidence that riparian buffer regulations in the Atlantic Forest region are protecting stream ecosystems from pesticides and other agricultural stressors. Further studies are needed to determine the minimum buffer widths necessary to achieve optimal protection.

  7. Distinguishing Male and Female Chinese Rose Beetles, Adoretus sinicus, with an Overview of Adoretus Species of Biosecurity Concern

    PubMed Central

    McQuate, Grant T.; Jameson, Mary Liz

    2011-01-01

    The Chinese rose beetle, Adoretus sinicus Burmeister (Coleoptera: Scarabaeidae: Rutelinae: Adoretini), is a broadly polyphagous scarab beetle that is economically important and causes damage to a wide variety of host plants including agricultural crops and ornamentals in Southeast Asia, China, the Hawaiian Islands and several other Pacific Islands. The species has become established in numerous regions and is of biosecurity concern because importation of this species to other regions poses a threat to agriculture due to its generalist herbivore feeding habits. Field and laboratory research directed towards control of the species is hampered by the lack of characteristics that allow accurate determination of the sexes on live beetles in the field. Here, three recognizable and reliable non-destructive morphological differences between the sexes of A. sinicus are documented: (1) the form of the terminal sternite; (2) the length to width ratio of protarsomere 1, and; 3) the ratio of the combined length of protarsomeres 2–4 to the length of protarsomere 1. Because many Adoretus species are of biosecurity concern, and because tools to identify Adoretus species are lacking, we review the natural history and research on control associated with A. sinicus as well as the genus as a whole. PMID:21864158

  8. Geologic research in support of sustainable agriculture

    USGS Publications Warehouse

    Gough, L.P.; Herring, J.R.

    1993-01-01

    The importance and role of the geosciences in studies of sustainable agriculture include such traditional research areas as, agromineral resource assessments, the mapping and classification of soils and soil amendments, and the evaluation of landscapes for their vulnerability to physical and chemical degradation. Less traditional areas of study, that are increasing in societal importance because of environmental concerns and research into sustainable systems in general, include regional geochemical studies of plant and animal trace element deficiencies and toxicities, broad-scale water quality investigations, agricultural chemicals and the hydrogeologic interface, and minimally processed and ion-exchange agrominerals. We discuss the importance and future of phosphate in the US and world based on human population growth, projected agromineral demands in general, and the unavailability of new, high-quality agricultural lands. We also present examples of studies that relate geochemistry and the hydrogeologic characteristics of a region to the bioavailability and cycling of trace elements important to sustainable agricultural systems. ?? 1993.

  9. Farmers' perception on the importance of variegated grasshopper (Zonocerus variegatus (L.)) in the agricultural production systems of the humid forest zone of Southern Cameroon

    PubMed Central

    Kekeunou, Sévilor; Weise, Stephan; Messi, Jean; Tamò, Manuel

    2006-01-01

    Background Zonocerus variegatus (Linnaeus, 1758) (Orthoptera: Pyrgomorphidae) is known as an agricultural pest in West and Central Africa. However, its importance in the agricultural production system in Cameroon has not been investigated. The study assesses farmers' perception on the importance of Z. variegatus in the agricultural production systems of the humid forest zone of Southern Cameroon. Methods Research was carried out in 5 villages of each of three Agro-Ecological, Cultural and Demographic Blocks (AECD-Blocks) of the Forest Margin Benchmark Area (FMBA). In each village, a semi-structured survey was used; male and female groups of farmers were interviewed separately. Results Z. variegatus is present throughout the humid forest zone of Southern Cameroon, where it is ranked as the third most economically important insect pest of agriculture. In the farmers' opinion, Z. variegatus is a polyphagous insect with little impact on young perennial crops. The length of the pre-farming fallow does not affect Z. variegatus pest pressure in the following crops. The increased impact of the grasshopper observed today in the fields, compared to what existed 10 years ago is as a result of deforestation and increase in surface of herbaceous fallow. The damage caused by Z. variegatus is higher in fields adjacent to C. odorata and herbaceous fallows than in those adjacent to forests and shrubby fallows. The fight against this grasshopper is often done through physical methods carried out by hand, for human consumption. The farmers highlight low usage of the chemical methods and a total absence of biological and ecological methods. Conclusion Farmers' perception have contributed to understanding the status of Z. variegatus in the humid forest zone of Southern Cameroon. The results are in general similar to those obtained in other countries. PMID:16573815

  10. 7 CFR 1212.12 - Importer-Handler Representative.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ....12 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE HONEY PACKERS AND IMPORTERS RESEARCH, PROMOTION, CONSUMER EDUCATION AND INDUSTRY INFORMATION ORDER Honey Packers...

  11. About the Endangered Species Protection Program

    EPA Pesticide Factsheets

    The goal of EPA's Endangered Species Protection Program is to carry out EPA’s FIFRA responsibilities in compliance with the Endangered Species Act, without placing unnecessary burden on agriculture and other pesticide users. Read an overview of the ESPP.

  12. Remote sensing in Virginia agriculture

    NASA Technical Reports Server (NTRS)

    Pettry, D. E.; Newhouse, M. E.; Dunton, E. M., Jr.; Scott, J. H., Jr.

    1972-01-01

    An experimental investigation, designed to develop and evaluate multispectral sensing techniques used in sensing agricultural crops, is described. Initial studies were designed to detect plant species and associated diseases, soil variations, and cultural practices under natural environment conditions. In addition, crop varieties, age, spacing, plant height, percentage of ground cover, and plant vigor are determined.

  13. Barcode Identifiers as a Practical Tool for Reliable Species Assignment of Medically Important Black Yeast Species

    PubMed Central

    Heinrichs, Guido; de Hoog, G. Sybren

    2012-01-01

    Herpotrichiellaceous black yeasts and relatives comprise severe pathogens flanked by nonpathogenic environmental siblings. Reliable identification by conventional methods is notoriously difficult. Molecular identification is hampered by the sequence variability in the internal transcribed spacer (ITS) domain caused by difficult-to-sequence homopolymeric regions and by poor taxonomic attribution of sequences deposited in GenBank. Here, we present a potential solution using short barcode identifiers (27 to 50 bp) based on ITS2 ribosomal DNA (rDNA), which allows unambiguous definition of species-specific fragments. Starting from proven sequences of ex-type and authentic strains, we were able to describe 103 identifiers. Multiple BLAST searches of these proposed barcode identifiers in GenBank revealed uniqueness for 100 taxonomic entities, whereas the three remaining identifiers each matched with two entities, but the species of these identifiers could easily be discriminated by differences in the remaining ITS regions. Using the proposed barcode identifiers, a 4.1-fold increase of 100% matches in GenBank was achieved in comparison to the classical approach using the complete ITS sequences. The proposed barcode identifiers will be made accessible for the diagnostic laboratory in a permanently updated online database, thereby providing a highly practical, reliable, and cost-effective tool for identification of clinically important black yeasts and relatives. PMID:22785187

  14. Measuring Florida Extension Faculty's Agricultural Paradigmatic Preferences

    ERIC Educational Resources Information Center

    Warner, Laura A.; Murphrey, Theresa Pesl; Lawver, David E.; Baker, Matt; Lindner, James R.

    2014-01-01

    The demand for sustainable agriculture has increased, and many institutions, including the University of Florida, have adopted agricultural sustainability as a major goal. Extension has been identified as a critical information source, important in disseminating sustainable agricultural growing techniques. However, research has demonstrated that…

  15. The importance of range edges for an irruptive species during extreme weather events

    USGS Publications Warehouse

    Bateman, Brooke L.; Pidgeon, Anna M.; Radeloff, Volker C.; Allstadt, Andrew J.; Akçakaya, H. Resit; Thogmartin, Wayne E.; Vavrus, Stephen J.; Heglund, Patricia J.

    2015-01-01

    In a changing climate where more frequent extreme weather may be more common, conservation strategies for weather-sensitive species may require consideration of habitat in the edges of species’ ranges, even though non-core areas may be unoccupied in ‘normal’ years. Our results highlight the conservation importance of range edges in providing refuge from extreme events, such as drought, and climate change.

  16. Development of RFLP-PCR method for the identification of medically important Aspergillus species using single restriction enzyme MwoI.

    PubMed

    Diba, K; Mirhendi, H; Kordbacheh, P; Rezaie, S

    2014-01-01

    In this study we attempted to modify the PCR-RFLP method using restriction enzyme MwoI for the identification of medically important Aspergillus species. Our subjects included nine standard Aspergillus species and 205 Aspergillus isolates of approved hospital acquired infections and hospital indoor sources. First of all, Aspergillus isolates were identified in the level of species by using morphologic method. A twenty four hours culture was performed for each isolates to harvest Aspergillus mycelia and then genomic DNA was extracted using Phenol-Chloroform method. PCR-RFLP using single restriction enzyme MwoI was performed in ITS regions of rDNA gene. The electrophoresis data were analyzed and compared with those of morphologic identifications. Total of 205 Aspergillus isolates included 153 (75%) environmental and 52 (25%) clinical isolates. A. flavus was the most frequently isolate in our study (55%), followed by A. niger 65(31.7%), A. fumigatus 18(8.7%), A. nidulans and A. parasiticus 2(1% each). MwoI enabled us to discriminate eight medically important Aspergillus species including A. fumigatus, A. niger, A. flavus as the most common isolated species. PCR-RFLP method using the restriction enzyme MwoI is a rapid and reliable test for identification of at least the most medically important Aspergillus species.

  17. Development of RFLP-PCR method for the identification of medically important Aspergillus species using single restriction enzyme MwoI

    PubMed Central

    Diba, K.; Mirhendi, H.; Kordbacheh, P.; Rezaie, S.

    2014-01-01

    In this study we attempted to modify the PCR-RFLP method using restriction enzyme MwoI for the identification of medically important Aspergillus species. Our subjects included nine standard Aspergillus species and 205 Aspergillus isolates of approved hospital acquired infections and hospital indoor sources. First of all, Aspergillus isolates were identified in the level of species by using morphologic method. A twenty four hours culture was performed for each isolates to harvest Aspergillus mycelia and then genomic DNA was extracted using Phenol-Chloroform method. PCR-RFLP using single restriction enzyme MwoI was performed in ITS regions of rDNA gene. The electrophoresis data were analyzed and compared with those of morphologic identifications. Total of 205 Aspergillus isolates included 153 (75%) environmental and 52 (25%) clinical isolates. A. flavus was the most frequently isolate in our study (55%), followed by A. niger 65(31.7%), A. fumigatus 18(8.7%), A. nidulans and A. parasiticus 2(1% each). MwoI enabled us to discriminate eight medically important Aspergillus species including A. fumigatus, A. niger, A. flavus as the most common isolated species. PCR-RFLP method using the restriction enzyme MwoI is a rapid and reliable test for identification of at least the most medically important Aspergillus species. PMID:25242934

  18. Seagrass epiphytic assemblages are strong indicators of agricultural discharge but weak indicators of host features

    NASA Astrophysics Data System (ADS)

    Prado, Patricia

    2018-05-01

    Wastewater pulses from rice agriculture are persistently discharged into the northern shore of the Alfacs Bay (Ebro Delta, NW Mediterranean) from April to November. The bay also receives water from coastal lagoons which are subjected to freshwater inputs from the Ebro River mixed to an unknown extent with agricultural wastewater during the same period. This paper compares epiphyte assemblages growing on leaves of Cymodocea nodosa in sites exposed to agricultural drainage channels, lagoon connection channels, and control sites in the Ebro Delta Natural Park (southern shore of the bay). Leaf epiphytic assemblages of Zostera noltii patches in the northern shore of the bay were also compared with those of adjacent beds of C. nodosa. Drainage channel sites had consistently distinctive assemblages (higher species richness, biomass load, and taxa composition) than control sites. Assemblages from lagoon channel sites were more variable, with three sites showing particularly high covers of epiphytic algae and two sites more similar to controls. Epiphyte patterns clearly matched in situ measures of nutrient availability, and were consistent with decreased shoot densities in discharge sites. In contrast, differences in epiphyte assemblages between seagrass species were minor, and mostly a result of higher epiphytic loads on C. nodosa than on Z. noltii, which features thinner leaves. Further research is needed to investigate the consequences of these plant and epiphyte alterations in important ecosystem processes such as decomposition and export rates, as well as overall effects of nutrients and salinity in secondary producers such as associated macroinvertebrate assemblages supporting locally important marine fisheries.

  19. Brevipalpus phoenicis (group species B) on Citrus spp. and Coffea arabica, State of Sao Paulo, Brazil.

    USDA-ARS?s Scientific Manuscript database

    Some mite species of the genus Brevipalpus are considered pests of economic importance for several agricultural crops such as citrus and coffee. They are associated with the transmission of viruses [e.g.:citrus leprosis virus (CiLV), coffee ringspot virus (CoRSV)]. Recent studies indicate that the ...

  20. Successional trends in Sonoran Desert abandoned agricultural fields in northern Mexico

    USGS Publications Warehouse

    Castellanos, A.E.; Martinez, M.J.; Llano, J.M.; Halvorson, W.L.; Espiricueta, M.; Espejel, I.

    2005-01-01

    Excessive ground-water use and saline intrusion to the aquifer led, in less than three decades, to an increase in abandoned agricultural fields at La Costa de Hermosillo, within the Sonoran Desert. Using a chronosequence from years since abandonment, patterns of field succession were developed. Contrary to most desert literature, species replacement was found, both in fields with and without saline intrusion. Seasonal photosynthetic capacity as well as water and nitrogen use efficiencies were different in dominant early and late successional plant species. These ecological findings provided a framework for a general explanation of species dominance and replacement within abandoned agricultural fields in the Sonoran Desert. ?? 2004 Elsevier Ltd. All rights reserved.

  1. Burkholderia puraquae sp. nov., a novel species of the Burkholderia cepacia complex isolated from hospital settings and agricultural soils.

    PubMed

    Martina, Pablo; Leguizamon, Mariana; Prieto, Claudia I; Sousa, Silvia A; Montanaro, Patricia; Draghi, Walter O; Stämmler, Maren; Bettiol, Marisa; de Carvalho, Carla C C R; Palau, Juliana; Figoli, Cecilia; Alvarez, Florencia; Benetti, Silvina; Lejona, Sergio; Vescina, Cecilia; Ferreras, Julián; Lasch, Peter; Lagares, Antonio; Zorreguieta, Angeles; Leitão, Jorge H; Yantorno, Osvaldo M; Bosch, Alejandra

    2018-01-01

    Bacteria from the Burkholderia cepacia complex (Bcc) are capable of causing severe infections in patients with cystic fibrosis (CF). These opportunistic pathogens are also widely distributed in natural and man-made environments. After a 12-year epidemiological surveillance involving Bcc bacteria from respiratory secretions of Argentinean patients with CF and from hospital settings, we found six isolates of the Bcc with a concatenated species-specific allele sequence that differed by more than 3 % from those of the Bcc with validly published names. According to the multilocus sequence analysis (MLSA), these isolates clustered with the agricultural soil strain, Burkholderia sp. PBP 78, which was already deposited in the PubMLST database. The isolates were examined using a polyphasic approach, which included 16S rRNA, recA, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), DNA base composition, average nucleotide identities (ANIs), fatty acid profiles, and biochemical characterizations. The results of the present study demonstrate that the seven isolates represent a single novel species within the Bcc, for which the name Burkholderia puraquae sp. nov. is proposed. Burkholderia puraquae sp. nov. CAMPA 1040 T (=LMG 29660 T =DSM 103137 T ) was designated the type strain of the novel species, which can be differentiated from other species of the Bcc mainly from recA gene sequence analysis, MLSA, ANIb, MALDI-TOF MS analysis, and some biochemical tests, including the ability to grow at 42 °C, aesculin hydrolysis, and lysine decarboxylase and β-galactosidase activities.

  2. Assessing the shelf life of cost-efficient conservation plans for species at risk across gradients of agricultural land use.

    PubMed

    Robillard, Cassandra M; Kerr, Jeremy T

    2017-08-01

    High costs of land in agricultural regions warrant spatial prioritization approaches to conservation that explicitly consider land prices to produce protected-area networks that accomplish targets efficiently. However, land-use changes in such regions and delays between plan design and implementation may render optimized plans obsolete before implementation occurs. To measure the shelf life of cost-efficient conservation plans, we simulated a land-acquisition and restoration initiative aimed at conserving species at risk in Canada's farmlands. We accounted for observed changes in land-acquisition costs and in agricultural intensity based on censuses of agriculture taken from 1986 to 2011. For each year of data, we mapped costs and areas of conservation priority designated using Marxan. We compared plans to test for changes through time in the arrangement of high-priority sites and in the total cost of each plan. For acquisition costs, we measured the savings from accounting for prices during site selection. Land-acquisition costs and land-use intensity generally rose over time independent of inflation (24-78%), although rates of change were heterogeneous through space and decreased in some areas. Accounting for spatial variation in land price lowered the cost of conservation plans by 1.73-13.9%, decreased the range of costs by 19-82%, and created unique solutions from which to choose. Despite the rise in plan costs over time, the high conservation priority of particular areas remained consistent. Delaying conservation in these critical areas may compromise what optimized conservation plans can achieve. In the case of Canadian farmland, rapid conservation action is cost-effective, even with moderate levels of uncertainty in how to implement restoration goals. © 2016 Society for Conservation Biology.

  3. Maximizing Amazonia's Ecosystem Services: Juggling the potential for carbon storage, agricultural yield and biodiversity in the Amazon

    NASA Astrophysics Data System (ADS)

    O'Connell, C. S.; Foley, J. A.; Gerber, J. S.; Polasky, S.

    2011-12-01

    The Amazon is not only an exceptionally biodiverse and carbon-rich tract of tropical forest, it is also a case study in land use change. Over the next forty years it will continue to experience pressure from an urbanizing and increasingly affluent populace: under a business-as-usual scenario, global cropland, pasture and biofuels systems will carry on expanding, while the Amazon's carbon storage potential will likely become another viable revenue source under REDD+. Balancing those competing land use pressures ought also take into account Amazonia's high - but heterogeneous - biodiversity. Knowing where Amazonia has opportunities to make efficient or optimal trade offs between carbon storage, agricultural production and biodiversity can allow policymakers to direct or influence LUC drivers. This analysis uses a spatially-explicit model that takes climate and management into account to quantify the potential agricultural yield of both the Amazon's most important agricultural commodities - sugar, soy and maize - as well as several that are going to come into increasing prominence, including palm oil. In addition, it maps the potential for carbon to be stored in forest biomass and relative species richness across Amazonia. We then compare carbon storage, agricultural yield and species richness and identify areas where efficient trade offs occur between food, carbon, and biodiversity - three critical ecosystem goods and services provided by the world's largest tropical forest.

  4. Teaching Farmers and Commercial Pesticide Applicators about Invasive Species in Pesticide Training Workshops

    ERIC Educational Resources Information Center

    Wyatt, Gary J.; Herzfeld, Dean; Haugen-Brown, Tana

    2015-01-01

    Farmers and agricultural professionals who are aware of species likely to invade agricultural landscapes can be active participants in efforts to detect invasive species. To reach this audience we created a short invasive species program and added it to the existing and required pesticide applicator recertification workshops. We highlighted four…

  5. Agricultural waste from the tequila industry as substrate for the production of commercially important enzymes.

    PubMed

    Huitron, C; Perez, R; Sanchez, A E; Lappe, P; Rocha Zavaleta, L

    2008-01-01

    Approximately 1 million tons of Agave tequilana plants are processed annually by the Mexican Tequila industry generating vast amounts of agricultural waste. The aim of this study was to investigate the potential use of Agave tequilana waste as substrate for the production of commercially important enzymes. Two strains of Aspergillus niger (CH-A-2010 and CH-A-2016), isolated from agave fields, were found to grow and propagate in submerged cultures using Agave tequilana waste as substrate. Isolates showed simultaneous extracellular inulinase, xylanase, pectinase, and cellulase activities. Aspergillus CH-A-2010 showed the highest production of inulinase activity (1.48 U/ml), whereas Aspergillus niger CH-A-2016 produced the highest xylanase (1.52 U/ml) and endo-pectinase (2.7U/ml) activities. In both cases production of enzyme activities was significantly higher on Agave tequilana waste than that observed on lemon peel and specific polymeric carbohydrates. Enzymatic hydrolysis of raw A. tequilana stems and leaves, by enzymes secreted by the isolates yielded maximum concentrations of reducing sugars of 28.2 g/l, and 9.9 g/l respectively. In conclusion, Agave tequilana waste can be utilized as substrate for the production of important biotechnological enzymes.

  6. Applications of DNA Technologies in Agriculture.

    PubMed

    Fang, Jinggui; Zhu, Xudong; Wang, Chen; Shangguan, Lingfei

    2016-08-01

    With the development of molecular biology, some DNA-based technologies have showed great potentiality in promoting the efficiency of crop breeding program, protecting germplasm resources, improving the quality and outputs of agricultural products, and protecting the eco-environment etc., making their roles in modern agriculture more and more important. To better understand the application of DNA technologies in agriculture, and achieve the goals to promote their utilities in modern agriculture, this paper describes, in some different way, the applications of molecular markers, transgenic engineering and gene's information in agriculture. Some corresponding anticipations for their development prospects are also made.

  7. Study of Agricultural Product Options Pricing

    NASA Astrophysics Data System (ADS)

    HONG, Qiu

    2017-09-01

    China is a large agricultural country, and the healthy development of agriculture is related to the stability of the whole society. The agricultural production and management of agricultural products are confronted with many risks, especially the market risks. Option contract is the object of option market transaction, so it is very important to study the option contract of agricultural products. Option trading separates the risk and profit, so that the trader can avoid the risk while retaining the opportunity to obtain income. The option has the characteristics of low transaction cost, simple and efficient, so it is suitable for small and medium investors.

  8. A comparison of honey bee-collected pollen from working agricultural lands using light microscopy and ITS metabarcoding

    USGS Publications Warehouse

    Smart, Matthew; Cornman, Robert S.; Iwanowicz, Deborah; McDermott-Kubeczko, Margaret; Pettis, Jeff S; Spivak, Marla S; Otto, Clint R.

    2017-01-01

    Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has not been tested on a spatially or temporally robust number of pollen samples. Here, we compare pollen identification results derived from light microscopy and DNA sequencing techniques with samples collected from honey bee colonies embedded within a gradient of intensive agricultural landscapes in the Northern Great Plains throughout the 2010–2011 growing seasons. We demonstrate that at all taxonomic levels, DNA sequencing was able to discern a greater number of taxa, and was particularly useful for the identification of infrequently detected species. Importantly, substantial phenological overlap did occur for commonly detected taxa using either technique, suggesting that DNA sequencing is an appropriate, and enhancing, substitutive technique for accurately capturing the breadth of bee-collected species of pollen present across agricultural landscapes. We also show that honey bees located in high and low intensity agricultural settings forage on dissimilar plants, though with overlap of the most abundantly collected pollen taxa. We highlight practical applications of utilizing sequencing technology, including addressing ecological issues surrounding land use, climate change, importance of taxa relative to abundance, and evaluating the impact of conservation program habitat enhancement efforts.

  9. Distinct responses of bacterial communities to agricultural and urban impacts in temperate southern African estuaries

    NASA Astrophysics Data System (ADS)

    Matcher, G. F.; Froneman, P. W.; Meiklejohn, I.; Dorrington, R. A.

    2018-01-01

    Worldwide, estuaries are regarded as amongst the most ecologically threatened ecosystems and are increasingly being impacted by urban development, agricultural activities and reduced freshwater inflow. In this study, we examined the influence of different human activities on the diversity and structure of bacterial communities in the water column and sediment in three distinct, temperate permanently open estuarine systems within the same geographic region of southern Africa. The Kariega system is freshwater-deprived and is considered to be relatively pristine; the Kowie estuary is marine-dominated and impacted by urban development, while the Sundays system is fresh-water dominated and impacted by agricultural activity in its catchment. The bacterial communities in all three systems comprise predominantly heterotrophic species belonging to the Bacteroidetes and Proteobacteria phyla with little overlap between bacterioplankton and benthic bacterial communities at the species level. There was overlap between the operational taxonomic units (OTUs) of the Kowie and Kariega, both marine-influenced estuaries. However, lower species richness in the Kowie, likely reflects the impact of human settlements along the estuary. The dominant OTUs in the Sundays River system were distinct from those of the Kariega and Kowie estuaries with an overall decrease in species richness and evenness. This study provides an important snapshot into the microbial population structures of permanently open temperate estuarine systems and the influence of anthropogenic impacts on bacterial diversity and community structure.

  10. Antimicrobial activity of some important Adiantum species used traditionally in indigenous systems of medicine.

    PubMed

    Singh, Meenakshi; Singh, Neha; Khare, P B; Rawat, A K S

    2008-01-17

    Adiantum Linn. of Adiantaceae family is one of the most common and widely distributed species. Ethnomedicinally, the genus is important and popularly known as "Hansraj" in Ayurvedic System of Medicine. It has been used in cold, tumors of spleen, liver and other viscera, skin diseases, bronchitis and inflammatory diseases. It is also considered as tonic and diuretic. In the present study its four important species, i.e. Adiantum capillus-veneris, Adiantum peruvianum, Adiantum venustum and Adiantum caudatum were collected and extracted with methanol. These extracts were tested for their antimicrobial agents against five gram positive, six gram negative (including multiresistant bacteria Staphylococcus aureus) and eight fungal strains using standard microdilution assay. The maximum activity was exhibited by the methanolic extract of Adiantum venustum followed by Adiantum capillus-veneris, Adiantum peruvianum and Adiantum caudatum. The methanolic extract of Adiantum capillus-veneris had very low MIC value (0.48 microg/ml) against Escherichia coli whereas, Adiantum venustum extract against Aspergillus terreus with MIC of 0.97 microg/ml. Total phenolic constituents of Adiantum species viz. Adiantum venustum, Adiantum capillus-veneris, Adiantum peruvianum and Adiantum caudatum were 0.81% (w/w), 0.83% (w/w), 0.71% (w/w) and 0.52% (w/w), respectively (as gallic acid equivalent); implying that the observed activity could be related to the amount of phenolics.

  11. Critical review of the emerging research evidence on agricultural biodiversity, diet diversity, and nutritional status in low- and middle-income countries.

    PubMed

    Jones, Andrew D

    2017-10-01

    The declining diversity of agricultural production and food supplies worldwide may have important implications for global diets. The primary objective of this review is to assess the nature and magnitude of the associations of agricultural biodiversity with diet quality and anthropometric outcomes in low- and middle-income countries. A comprehensive review of 5 databases using a priori exclusion criteria and application of a systematic, qualitative analysis to the findings of identified studies revealed that agricultural biodiversity has a small but consistent association with more diverse household- and individual-level diets, although the magnitude of this association varies with the extent of existing diversification of farms. Greater on-farm crop species richness is also associated with small, positive increments in young child linear stature. Agricultural diversification may contribute to diversified diets through both subsistence- and income-generating pathways and may be an important strategy for improving diets and nutrition outcomes in low- and middle-income countries. Six research priorities for future studies of the influence of agricultural biodiversity on nutrition outcomes are identified based on gaps in the research literature. © The Author(s) 2017. Published by Oxford University Press on behalf of the International Life Sciences Institute.

  12. [Effects of agricultural practices on community structure of arbuscular mycorrhizal fungi in agricultural ecosystem: a review].

    PubMed

    Sheng, Ping-Ping; Li, Min; Liu, Run-Jin

    2011-06-01

    Arbuscular mycorrhizal (AM) fungi are rich in diversity in agricultural ecosystem, playing a vital role based on their unique community structure. Host plants and environmental factors have important effects on AM fungal community structure, so do the agricultural practices which deserve to pay attention to. This paper summarized the research advances in the effects of agricultural practices such as irrigation, fertilization, crop rotation, intercropping, tillage, and pesticide application on AM fungal community structure, analyzed the related possible mechanisms, discussed the possible ways in improving AM fungal community structure in agricultural ecosystem, and put forward a set of countermeasures, i.e., improving fertilization system and related integrated techniques, increasing plant diversity in agricultural ecosystem, and inoculating AM fungi, to enhance the AM fungal diversity in agricultural ecosystem. The existing problems in current agricultural practices and further research directions were also proposed.

  13. Fire rehabilitation using native and introduced species: A landscape trial

    Treesearch

    Tyler W. Thompson; Bruce A. Roundy; E. Durant McArthur; Brad D. Jessop; Blair Waldron; James N. Davis

    2006-01-01

    rehabilitation study comparing a predominately introduced species seed mix used by the US Department of Interior-Bureau of Land Management (BLM), a mix of native and introduced species provided by the US Department of Agriculture-Agricultural Research Service (ARS), and 2 native seed mixes (high and low diversity). Mixes were seeded with a rangeland drill on the big...

  14. 25th U.S. Department of Agriculture interagency research forum on invasive species [proceedings

    Treesearch

    Katherine A. McManus; Kurt W., comps Gottschalk

    2014-01-01

    This meeting was the 25th in a series of annual USDA Interagency Research Forums that are sponsored by the Forest Service, Animal and Plant Health Inspection Service, National Institute of Food and Agriculture, and Agriculture Research Service. The Group's original goal of fostering communication and providing a forum for the overview of ongoing research among the...

  15. A Landscape Approach to Invasive Species Management.

    PubMed

    Lurgi, Miguel; Wells, Konstans; Kennedy, Malcolm; Campbell, Susan; Fordham, Damien A

    2016-01-01

    Biological invasions are not only a major threat to biodiversity, they also have major impacts on local economies and agricultural production systems. Once established, the connection of local populations into metapopulation networks facilitates dispersal at landscape scales, generating spatial dynamics that can impact the outcome of pest-management actions. Much planning goes into landscape-scale invasive species management. However, effective management requires knowledge on the interplay between metapopulation network topology and management actions. We address this knowledge gap using simulation models to explore the effectiveness of two common management strategies, applied across different extents and according to different rules for selecting target localities in metapopulations with different network topologies. These management actions are: (i) general population reduction, and (ii) reduction of an obligate resource. The reduction of an obligate resource was generally more efficient than population reduction for depleting populations at landscape scales. However, the way in which local populations are selected for management is important when the topology of the metapopulation is heterogeneous in terms of the distribution of connections among local populations. We tested these broad findings using real-world scenarios of European rabbits (Oryctolagus cuniculus) infesting agricultural landscapes in Western Australia. Although management strategies targeting central populations were more effective in simulated heterogeneous metapopulation structures, no difference was observed in real-world metapopulation structures that are highly homogeneous. In large metapopulations with high proximity and connectivity of neighbouring populations, different spatial management strategies yield similar outcomes. Directly considering spatial attributes in pest-management actions will be most important for metapopulation networks with heterogeneously distributed links. Our

  16. Invasive vascular plant species of limnocrenic karst springs in Poland

    NASA Astrophysics Data System (ADS)

    Spałek, Krzysztof

    2015-04-01

    Natural water reservoirs are very valuable floristic sites in Poland. Among them, the most important for preservation of biodiversity of flora are limnocrenic karst springs. The long-term process of human pressure on habitats of this type caused disturbance of their biological balance. Changes in the water regime, industrial development and chemisation of agriculture, especially in the period of last two hundred years, led to systematic disappearance of localities of many plant species connected with rare habitats and also to appear numerous invasive plant species. They are: Acorus calamus, Echinocystis lobata, Elodea canadensis, Erechtites hieraciifolia, Impatiens glandulifera, Solidago canadensis, S. gigantea and S. graminifolia. Fielworks were conducted in 2010-2014.

  17. Species affinity and infracommunity ordination of helminths of Leptodactylus chaquensis (Anura: Leptodactylidae) in two contrasting environments from northeastern Argentina.

    PubMed

    Hamann, M I; Kehr, A I; González, C E

    2006-12-01

    One hundred seventy-two frogs (Leptodactylus chaquensis) were collected from November 2002 to November 2003, in agricultural (n = 132) and nonagricultural (n = 40) areas. Both sites are near the city of Corrientes, Argentina. The main goals of this study were as follows: (1) to determine the helminth parasite community in agricultural and nonagricultural habitats; (2) to analyze the relationships between helminth parasites and site of infection, frog body size, and gender; (3) to identify and examine covariation and association of helminth communities; and (4) to determine the mean richness and diversity of parasite communities. The helminth compound community of this amphibian species consisted of 24 species: 19 in agricultural habitats and 18 in nonagricultural habitats. The mean richness, mean diversity, and evenness of helminths were significantly different between the habitats (P < 0.05). The body size of the host was the important factor in determining parasite richness. Both habitats exhibited differences in community ordination. The helminth species in the 2 habitats exhibited the same interspecific relationships, although differences were observed in the intensity of infection.

  18. A report on identification of sequence polymorphism in barcode region of six commercially important Cymbopogon species.

    PubMed

    Bishoyi, Ashok Kumar; Kavane, Aarti; Sharma, Anjali; Geetha, K A

    2017-02-01

    CYMBOPOGON: is an important member of grass family Poaceae, cultivated for essential oils which have greater medicinal and industrial value. Taxonomic identification of Cymbopogon species is determined mainly by morphological markers, odour of essential oils and concentration of bioactive compounds present in the oil matrices which are highly influenced by environment. Authenticated molecular marker based taxonomical identification is also lacking in the genus; hence effort was made to evaluate potential DNA barcode loci in six commercially important Cymbopogon species for their individual discrimination and authentication at the species level. Four widely used DNA barcoding regions viz., ITS 1 & ITS 2 spacers, matK, psbA-trnH and rbcL were taken for the study. Gene sequences of the same or related genera of the concerned loci were mined from NCBI domain and primers were designed and validated for barcode loci amplification. Out of the four loci studied, sequences from matK and ITS spacer loci revealed 0.46% and 5.64% nucleotide sequence diversity, respectively whereas the other two loci i.e., psbA-trnH and rbcL showed 100% sequence homology. The newly developed primers can be used for barcode loci amplification in the genus Cymbopogon. The identified Single Nucleotide Polymorphisms from the studied sequences may be used as barcodes for the six Cymbopogon species. The information generated can also be utilized for barcode development of the genus by including more number of Cymbopgon species in future.

  19. Natural succession impeded by smooth brome (Bromus inermis) and intermediate wheatgrass (Agropyron intermedium) in an abandoned agricultural field

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nelson, J.K.

    1997-11-01

    In 1975, an abandoned agricultural field at Rocky Flats Environmental Technology Site (Site) that had been cultivated for more than 38 years, was seeded with smooth brome (Bromus inermis) and intermediate wheatgrass (Agropyron intermedium). Although these species are commonly planted in reclamation and roadside seed mixtures, few studies have documented their impact on the re-establishment of native plant communities. In 1994, species richness, cover, and biomass were sampled in the agricultural field and compared to the surrounding mixed-grass prairie at the Site. The agricultural field contained only 61 plant species (62% native), compared to 143 species (81% native) in themore » surrounding mixed-grass prairie. Community similarity based on species presence/absence was 0.47 (Sorensen coefficient of similarity). Basal vegetative cover was 11.2% in the agricultural field and 29.1% in the mixed-grass prairie. Smooth brome and intermediate wheatgrass accounted for 93% of the relative foliar cover and 96% of the biomass in the agricultural field. The aggressive nature of these two planted species has impeded the natural succession of the agricultural field to a more native prairie community. Studies of natural succession on abandoned fields and roads in northeastern Colorado have indicated that if left alone, fields would return to their native climax state in approximately 50 years and would be approaching their native state after 20--25 years. Based on the results of this study, this agricultural field may take more than 100 years to return to a native mixed-grass prairie state and it may never achieve a native state without human intervention.« less

  20. Providing Confidence in Regional Maps in Predicting Where Nonnative Species are Invading the Forested Landscape

    Treesearch

    Dennis M. Jacobs; Victor A. Rudis

    2005-01-01

    Nonnative invasive plant species introduced to the South during the past century threaten to forest resources. Knowing their extent is important for strategic management and planning. We used U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FIA) field observations at ground-sampled locations to model the geographic occurrence probability...

  1. Providing confidence in regional maps in predicting where nonnative species are invading the forested landscape.

    Treesearch

    Dennis M. Jacobs; Victor A. Rudis

    2005-01-01

    Nonnative invasive plant species introduced to the South during the past century threaten to forest resources. Knowing their extent is important for strategic management and planning. We used U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FTA) field observations at ground-sampled locations to model the geographic occurrence probability...

  2. The importance of the riparian zone and in-stream processes in nitrate attenuation in undisturbed and agricultural watersheds – a review of the scientific literature

    USGS Publications Warehouse

    Ranalli, Anthony J.; Macalady, Donald L.

    2010-01-01

    We reviewed published studies from primarily glaciated regions in the United States, Canada, and Europe of the (1) transport of nitrate from terrestrial ecosystems to aquatic ecosystems, (2) attenuation of nitrate in the riparian zone of undisturbed and agricultural watersheds, (3) processes contributing to nitrate attenuation in riparian zones, (4) variation in the attenuation of nitrate in the riparian zone, and (5) importance of in-stream and hyporheic processes for nitrate attenuation in the stream channel. Our objectives were to synthesize the results of these studies and suggest methodologies to (1) monitor regional trends in nitrate concentration in undisturbed 1st order watersheds and (2) reduce nitrate loads in streams draining agricultural watersheds. Our review reveals that undisturbed headwater watersheds have been shown to be very retentive of nitrogen, but the importance of biogeochemical and hydrological riparian zone processes in retaining nitrogen in these watersheds has not been demonstrated as it has for agricultural watersheds. An understanding of the role of the riparian zone in nitrate attenuation in undisturbed watersheds is crucial because these watersheds are increasingly subject to stressors, such as changes in land use and climate, wildfire, and increases in atmospheric nitrogen deposition. In general, understanding processes controlling the concentration and flux of nitrate is critical to identifying and mapping the vulnerability of watersheds to water quality changes due to a variety of stressors. In undisturbed and agricultural watersheds we propose that understanding the importance of riparian zone processes in 2nd order and larger watersheds is critical. Research is needed that addresses the relative importance of how the following sources of nitrate along any given stream reach might change as watersheds increase in size and with flow: (1) inputs upstream from the reach, (2) tributary inflow, (3) water derived from the riparian zone

  3. Agriculture and nutrition in India: mapping evidence to pathways.

    PubMed

    Kadiyala, Suneetha; Harris, Jody; Headey, Derek; Yosef, Sivan; Gillespie, Stuart

    2014-12-01

    In India, progress against undernutrition has been slow. Given its importance for income generation, improving diets, care practices, and maternal health, the agriculture sector is widely regarded as playing an important role in accelerating the reduction in undernutrition. This paper comprehensively maps existing evidence along agriculture-nutrition pathways in India and assesses both the quality and coverage of the existing literature. We present a conceptual framework delineating six key pathways between agriculture and nutrition. Three pathways pertain to the nutritional impacts of farm production, farm incomes, and food prices. The other three pertain to agriculture-gender linkages. After an extensive search, we found 78 research papers that provided evidence to populate these pathways. The literature suggests that Indian agriculture has a range of important influences on nutrition. Agriculture seems to influence diets even when controlling for income, and relative food prices could partly explain observed dietary changes in recent decades. The evidence on agriculture-gender linkages to nutrition is relatively weak. Sizeable knowledge gaps remain. The root causes of these gaps include an interdisciplinary disconnect between nutrition and economics/agriculture, a related problem of inadequate survey data, and limited policy-driven experimentation. Closing these gaps is essential to strengthening the agriculture sector's contribution to reducing undernutrition. © 2014 New York Academy of Sciences.

  4. Agriculture and the Property Tax: A Forward Look Based on a Historical Perspective. Agricultural Economic Report No. 392.

    ERIC Educational Resources Information Center

    Stam, Jerome M.; Sibold, Ann G.

    Assessing the property tax in terms of agriculture, this report analyzes the following in an historical sense in order to draw implications for the future: (1) the importance of the property tax to the agricultural sector; (2) the horizontal equity of the property tax for the agricultural and nonagricultural sectors in terms of income and wealth;…

  5. Agricultural pest monitoring using fluorescence lidar techniques. Feasibility study

    NASA Astrophysics Data System (ADS)

    Mei, L.; Guan, Z. G.; Zhou, H. J.; Lv, J.; Zhu, Z. R.; Cheng, J. A.; Chen, F. J.; Löfstedt, C.; Svanberg, S.; Somesfalean, G.

    2012-03-01

    The fluorescence of different types of planthopper ( Hemiptera) and moth ( Lepidoptera), which constitute important Chinese agricultural pests, was investigated both in situ in a laboratory setting and remotely using a fluorescence light detection and ranging (lidar) system operating at a range of about 50 m. The natural autofluorescence of different species, as well as the fluorescence from insects that had been dusted with fluorescent dye powder for identification were studied. Autofluorescence spectra of both moths and planthoppers show a maximum intensity peak around 450 nm. Bleaching upon long-time laser illumination was modest and did not affect the shape of the spectrum. A single dyed rice planthopper, a few mm in size, could be detected at 50 m distance by using the fluorescence lidar system. By employing various marking dyes, different types of agricultural pest could be determined. We suggest that lidar may be used in studies of migration and movement of pest insects, including studies of their behavior in the vicinity of pheromone traps and in pheromone-treated fields.

  6. Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability-A Review.

    PubMed

    Vejan, Pravin; Abdullah, Rosazlin; Khadiran, Tumirah; Ismail, Salmah; Nasrulhaq Boyce, Amru

    2016-04-29

    Plant growth promoting rhizobacteria (PGPR) shows an important role in the sustainable agriculture industry. The increasing demand for crop production with a significant reduction of synthetic chemical fertilizers and pesticides use is a big challenge nowadays. The use of PGPR has been proven to be an environmentally sound way of increasing crop yields by facilitating plant growth through either a direct or indirect mechanism. The mechanisms of PGPR include regulating hormonal and nutritional balance, inducing resistance against plant pathogens, and solubilizing nutrients for easy uptake by plants. In addition, PGPR show synergistic and antagonistic interactions with microorganisms within the rhizosphere and beyond in bulk soil, which indirectly boosts plant growth rate. There are many bacteria species that act as PGPR, described in the literature as successful for improving plant growth. However, there is a gap between the mode of action (mechanism) of the PGPR for plant growth and the role of the PGPR as biofertilizer-thus the importance of nano-encapsulation technology in improving the efficacy of PGPR. Hence, this review bridges the gap mentioned and summarizes the mechanism of PGPR as a biofertilizer for agricultural sustainability.

  7. The Land Use Change From Agricultural to Non-Agricultural in Bungo Regency, Jambi Province, Indonesia

    NASA Astrophysics Data System (ADS)

    Dolly, Fajar Ifan; Kismartini, Kismartini; Purnaweni, Hartuti

    2018-02-01

    This study aimed at observing the development of agricultural land use in Bungo Regency, Jambi Province, for other purposes, such as plantation, mining, and other commercial buildings. According to the sustainable agriculture supposed by the government, a change in land use has become an important issue to be taken into account as such that the change does not tend to damage the environment. The research findings from Bungo Regency demonstrated the change in agricultural land into copra and rubber plantation areas. Local people had changed their mindset towards reluctance to become farmers, which caused the loss of farmer regeneration and weakened the farmer exchange rate towards the agricultural commodities.

  8. Use of DNA barcodes to identify invasive armyworm Spodoptera species in Florida.

    PubMed

    Nagoshi, Rodney N; Brambila, Julieta; Meagher, Robert L

    2011-01-01

    A critical component for sustaining adequate food production is the protection of local agriculture from invasive pest insects. Essential to this goal is the ability to accurately distinguish foreign from closely related domestic species, a process that has traditionally required identification using diagnostic morphological "keys" that can be both subtle and labor-intensive. This is the case for the Lepidopteran group of insects represented by Spodoptera, a genus of Noctuidae "armyworm" moths that includes several important agricultural pests. Two of the most destructive species, Spodoptera littoralis (Boisduval) (Lepidoptera: Noctuidae) and S. litura (F.) are not yet established in North America. To facilitate the monitoring for these pests, the feasibility of using DNA barcoding methodology for distinguishing between domestic and foreign Spodoptera species was tested. A DNA barcoding database was derived for a subset of Spodoptera species native to Florida, with an emphasis on those attracted to pheromone blends developed for S. litura or S. littoralis. These were then compared to the barcode sequences of S. litura collected from Taiwan and S. littoralis from Portugal. Consistent discrimination of the different species was obtained with phenetic relationships produced that were generally in agreement with phylogenetic studies using morphological characteristics. The data presented here indicate that DNA barcoding has the potential to be an efficient and accurate supplement to morphological methods for the identification of invasive Spodoptera pests in North America.

  9. Labor Factor Efficiency in the Agricultural Industry

    ERIC Educational Resources Information Center

    R?y, Inna U.; Shakulikova, Gulzada T.; Kozhakhmetova, Gulnar A.; Lashkareva, Olga V.; Bondarenko, Elena G.; Bermukhambetova, Botagoz B.; Baimagambetova, Zamzagul A.; Zhetessova, Mariyam T.; Beketova, Kamar N.; Anafiyaeva, Zhibek

    2016-01-01

    Agricultural problems associated with prospects of the rural population and agriculture in general have recently become an important factor in the modern economic policy development. The urgency of finding ways to improve the labor resource efficiency in agriculture pursuant to the state tasks is determined by the need to restore the agricultural…

  10. Importance of hybridization between indigenous and nonindigenous freshwater species: an overlooked threat to North American biodiversity.

    PubMed

    Perry, William L; Lodge, David M; Feder, Jeffrey L

    2002-04-01

    Biodiversity of North American freshwaters is among the greatest in the world. However, due to extensive habitat degradation, pollution, and introductions of nonindigenous species, this biodiversity is also among the most endangered. Unlike habitat degradation and pollution, nonindigenous species represent a permanent loss of biodiversity because their removal or control is often impossible. Most species introduced into nonnative North American ranges, however, are not from Eurasia but have been introduced from geographically isolated regions within North America. Although the ecological effects of introduced species have been widely documented, the effects of hybridization, especially between closely related species, represents an equally serious mechanism of extinction but is much less studied. Identification of which species are likely to hybridize after contact is of critical importance to prevent the further loss of native species. Molecular phylogenetics serves as a powerful tool to identify freshwater species at risk of introgression, if we can assume that genetic distance is a good predictor of the potential for hybridization. Although not a thorough review of all cases of hybridization, this article documents the extent and effects of hybridization in fishes, crayfishes, mussels, and other invertebrates in light of the currently accepted phylogenetic relationships. We suggest this approach may be the first step in addressing the potential threat of hybridization between many of the closely related species in North American fresh waters.

  11. Quantification of mitigation potentials of agricultural practices for Europe

    NASA Astrophysics Data System (ADS)

    Lesschen, J. P.; Kuikman, P. J.; Smith, P.; Schils, R. L.; Oudendag, D.

    2009-04-01

    Agriculture has a significant impact on climate, with a commonly estimated contribution of 9% of total greenhouse gases (GHG) emissions. Besides, agriculture is the main source of nitrous oxide and methane emissions to the atmosphere. On the other hand, there is a large potential for climate change mitigation in agriculture through carbon sequestration into soils. Within the framework of the PICCMAT project (Policy Incentives for Climate Change Mitigation Agricultural Techniques) we quantified the mitigation potential of 11 agricultural practices at regional level for the EU. The focus was on smaller-scale measures towards optimised land management that can be widely applied at individual farm level and which can have a positive climate change mitigating effect and be beneficial to soil conditions, e.g. cover crops and reduced tillage. The mitigation potentials were assessed with the MITERRA-Europe model, a deterministic and static N cycling model which calculates N emissions on an annual basis, using N emission factors and N leaching fractions. For the PICCMAT project the model was extended with a soil carbon module, to assess changes in soil organic carbon according to the IPCC Tier1 approach. The amount of soil organic carbon (SOC) is calculated by multiplying the soil reference carbon content, which depends on soil type and climate, by coefficients for land use, land management and input of organic matter. By adapting these coefficients changes in SOC as result of the measures were simulated. We considered both the extent of agricultural area across Europe on which a measure could realistically be applied (potential level of implementation), and the current level of implementation that has already been achieved . The results showed that zero tillage has the highest mitigation potential, followed by adding legumes, reduced tillage, residue management, rotation species, and catch crops. Optimising fertiliser application and fertiliser type are the measures with

  12. New species, hyper-diversity and potential importance of Calonectria spp. from Eucalyptus in South China

    PubMed Central

    Lombard, L.; Chen, S.F.; Mou, X.; Zhou, X.D.; Crous, P.W.; Wingfield, M.J.

    2015-01-01

    Plantation forestry is expanding rapidly in China to meet an increasing demand for wood and pulp products globally. Fungal pathogens including species of Calonectria represent a serious threat to the growth and sustainability of this industry. Surveys were conducted in the Guangdong, Guangxi and Hainan Provinces of South China, where Eucalyptus trees in plantations or cuttings in nurseries displayed symptoms of leaf blight. Isolations from symptomatic leaves and soils collected close to infected trees resulted in a large collection of Calonectria isolates. These isolates were identified using the Consolidated Species Concept, employing morphological characters and DNA sequence comparisons for the β-tubulin, calmodulin, histone H3 and translation elongation factor 1-alpha gene regions. Twenty-one Calonectria species were identified of which 18 represented novel taxa. Of these, 12 novel taxa belonged to Sphaero-Naviculate Group and the remaining six to the Prolate Group. Southeast Asia appears to represent a centre of biodiversity for the Sphaero-Naviculate Group and this fact could be one of the important constraints to Eucalyptus forestry in China. The remarkable diversity of Calonectria species in a relatively small area of China and associated with a single tree species is surprising. PMID:26955194

  13. Historical agriculture alters the effects of fire on understory plant beta diversity.

    PubMed

    Mattingly, W Brett; Orrock, John L; Collins, Cathy D; Brudvig, Lars A; Damschen, Ellen I; Veldman, Joseph W; Walker, Joan L

    2015-02-01

    Land-use legacies are known to shape the diversity and distribution of plant communities, but we lack an understanding of whether historical land use influences community responses to contemporary disturbances. Because human-modified landscapes often bear a history of multiple land-use activities, this contingency can challenge our understanding of land-use impacts on plant diversity. We address this contingency by evaluating how beta diversity (the spatial variability of species composition), an important component of regional biodiversity, is shaped by interactions between historical agriculture and prescribed fire, two prominent disturbances that are often coincident in terrestrial ecosystems. At three study locations spanning 450 km in the southeastern United States, we surveyed longleaf pine woodland understory plant communities across 232 remnant and post-agricultural sites with differing prescribed fire regimes. Our results demonstrate that agricultural legacies are a strong predictor of beta diversity, but the direction of this land-use effect differed among the three study locations. Further, although beta diversity increased with prescribed fire frequency at each study location, this effect was influenced by agricultural land-use history, such that positive fire effects were only documented among sites that lacked a history of agriculture at two of our three study locations. Our study not only highlights the role of historical agriculture in shaping beta diversity in a fire-maintained ecosystem but also illustrates how this effect can be contingent upon fire regime and geographic location. We suggest that interactions among historical and contemporary land-use activities may help to explain dissimilarities in plant communities among sites in human-dominated landscapes.

  14. Multiscale mapping of species diversity under changed land use using imaging spectroscopy.

    PubMed

    Paz-Kagan, Tarin; Caras, Tamir; Herrmann, Ittai; Shachak, Moshe; Karnieli, Arnon

    2017-07-01

    Land use changes are one of the most important factors causing environmental transformations and species diversity alterations. The aim of the current study was to develop a geoinformatics-based framework to quantify alpha and beta diversity indices in two sites in Israel with different land uses, i.e., an agricultural system of fruit orchards, an afforestation system of planted groves, and an unmanaged system of groves. The framework comprises four scaling steps: (1) classification of a tree species distribution (SD) map using imaging spectroscopy (IS) at a pixel size of 1 m; (2) estimation of local species richness by calculating the alpha diversity index for 30-m grid cells; (3) calculation of beta diversity for different land use categories and sub-categories at different sizes; and (4) calculation of the beta diversity difference between the two sites. The SD was classified based on a hyperspectral image with 448 bands within the 380-2500 nm spectral range and a spatial resolution of 1 m. Twenty-three tree species were classified with high overall accuracy values of 82.57% and 86.93% for the two sites. Significantly high values of the alpha index characterize the unmanaged land use, and the lowest values were calculated for the agricultural land use. In addition, high values of alpha indices were found at the borders between the polygons related to the "edge-effect" phenomenon, whereas low alpha indices were found in areas with high invasion species rates. The beta index value, calculated for 58 polygons, was significantly lower in the agricultural land use. The suggested framework of this study succeeded in quantifying land use effects on tree species distribution, evenness, and richness. IS and spatial statistics techniques offer an opportunity to study woody plant species variation with a multiscale approach that is useful for managing land use, especially under increasing environmental changes. © 2017 by the Ecological Society of America.

  15. The Endangered Species Act: Interfacing with Agricultural and Natural Ecosystems

    USDA-ARS?s Scientific Manuscript database

    The Endangered Species Act (ESA) provides protective measures and a framework for establishing compliance criteria for actions that may affect species (and their habitat) listed under the Act. In many cases, the ESA can be effectively used under Section & of the Act, which provides procedures for c...

  16. Genetic diversity and species diversity of stream fishes covary across a land-use gradient.

    PubMed

    Blum, Michael J; Bagley, Mark J; Walters, David M; Jackson, Suzanne A; Daniel, F Bernard; Chaloud, Deborah J; Cade, Brian S

    2012-01-01

    Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture-forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems.

  17. Genetic diversity and species diversity of stream fishes covary across a land-use gradient

    USGS Publications Warehouse

    Blum, M.J.; Bagley, M.J.; Walters, D.M.; Jackson, S.A.; Daniel, F.B.; Chaloud, D.J.; Cade, B.S.

    2012-01-01

    Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture-forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems. ?? 2011 Springer-Verlag.

  18. Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.

    PubMed

    von Wettberg, Eric J B; Chang, Peter L; Başdemir, Fatma; Carrasquila-Garcia, Noelia; Korbu, Lijalem Balcha; Moenga, Susan M; Bedada, Gashaw; Greenlon, Alex; Moriuchi, Ken S; Singh, Vasantika; Cordeiro, Matilde A; Noujdina, Nina V; Dinegde, Kassaye Negash; Shah Sani, Syed Gul Abbas; Getahun, Tsegaye; Vance, Lisa; Bergmann, Emily; Lindsay, Donna; Mamo, Bullo Erena; Warschefsky, Emily J; Dacosta-Calheiros, Emmanuel; Marques, Edward; Yilmaz, Mustafa Abdullah; Cakmak, Ahmet; Rose, Janna; Migneault, Andrew; Krieg, Christopher P; Saylak, Sevgi; Temel, Hamdi; Friesen, Maren L; Siler, Eleanor; Akhmetov, Zhaslan; Ozcelik, Huseyin; Kholova, Jana; Can, Canan; Gaur, Pooran; Yildirim, Mehmet; Sharma, Hari; Vadez, Vincent; Tesfaye, Kassahun; Woldemedhin, Asnake Fikre; Tar'an, Bunyamin; Aydogan, Abdulkadir; Bukun, Bekir; Penmetsa, R Varma; Berger, Jens; Kahraman, Abdullah; Nuzhdin, Sergey V; Cook, Douglas R

    2018-02-13

    Domesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of environment on genetic structure and trait values, and demonstrate variation between wild and cultivated accessions for agronomic properties. A resource of genotyped, association mapping progeny functionally links the wild and cultivated gene pools and is an essential resource chickpea for improvement, while our methods inform collection of other wild crop progenitor species.

  19. Agricultural Products | National Agricultural Library

    Science.gov Websites

    Skip to main content Home National Agricultural Library United States Department of Agriculture Ag News Contact Us Search  Log inRegister Home Home Agricultural Products NEWT: National Extension Web , tables, graphs), Agricultural Products html National Animal Nutrition Program (NANP) Feed Composition

  20. Synergistic mortality between a neonicotinoid insecticide and an ergosterol-biosynthesis-inhibiting fungicide in three bee species.

    PubMed

    Sgolastra, Fabio; Medrzycki, Piotr; Bortolotti, Laura; Renzi, Maria Teresa; Tosi, Simone; Bogo, Gherardo; Teper, Dariusz; Porrini, Claudio; Molowny-Horas, Roberto; Bosch, Jordi

    2017-06-01

    Neonicotinoid insecticides have been identified as an important factor contributing to bee diversity declines. Nonetheless, uncertainties remain about their impact under field conditions. Most studies have been conducted on Apis mellifera and tested single compounds. However, in agricultural environments, bees are often exposed to multiple pesticides. We explore the synergistic mortality between a neonicotinoid (clothianidin) and an ergosterol-biosynthesis-inhibiting fungicide (propiconazole) in three bee species (A. mellifera, Bombus terrestris, Osmia bicornis) following oral exposure in the laboratory. We developed a new approach based on the binomial proportion test to analyse synergistic interactions. We estimated uptake of clothianidin per foraging bout in honey bees foraging on seed-coated rapeseed fields. We found significant synergistic mortality in all three bee species exposed to non-lethal doses of propiconazole and their respective LD 10 of clothianidin. Significant synergism was only found at the first assessment times in A. mellifera (4 and 24 h) and B. terrestris (4 h), but persisted throughout the experiment (96 h) in O. bicornis. O. bicornis was also the most sensitive species to clothianidin. Our results underscore the importance to test pesticide combinations likely to occur in agricultural environments, and to include several bee species in environmental risk assessment schemes. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  1. COI barcode based species-specific primers for identification of five species of stored-product pests from genus Cryptolestes (Coleoptera: Laemophloeidae).

    PubMed

    Varadínová, Z; Wang, Y J; Kučerová, Z; Stejskal, V; Opit, G; Cao, Y; Li, F J; Li, Z H

    2015-04-01

    Flat grain beetles of the genus Cryptolestes (Coleoptera: Laemophloeidae) are one of the economically most important stored-product pests which feed on many kinds of agricultural products, especially grains. Nine of more than 40 described Cryptolestes species are recognized as stored-product pests and two of the pest species have a cosmopolitan distribution. Given the rapid growth in global trade of food products, ecological barriers to the spread of pests are easily overcome. Therefore, development of reliable systems for routine quarantine inspection and early infestation detection is vital. In the present study, we established a new rapid and accurate cytochrome c oxidase subunit I-based system for molecular identification of five common stored-product Cryptolestes species, namely, Cryptolestes capensis, Cryptolestes ferrugineus, Cryptolestes pusilloides, Cryptolestes pusillus and Cryptolestes turcicus. Five species-specific primer pairs for traditional uniplex polymerase chain reaction assay are described and their specificity and sensitivity for the identification process is evaluated using larval samples of 12 different populations from three continents (Asia, Europe and North America).

  2. Observations on morphology of immature Lucilia porphyrina (Diptera: Calliphoridae), a fly species of forensic importance.

    PubMed

    Klong-Klaew, Tunwadee; Sukontason, Kom; Sribanditmongkol, Pongruk; Moophayak, Kittikhun; Sanit, Sangob; Sukontason, Kabkaew L

    2012-11-01

    Lucilia porphyrina (Walker) is a blow fly of forensic importance, and shares its geographical distribution with a related forensically important species, Lucilia cuprina (Wiedemann). The immature stages of both species are similar in general appearance; therefore, correct identification should be given special consideration. This study highlighted the main features of L. porphyrina larvae, as observed under light microscopy and scanning electron microscopy. Particular attention is given to the anterior and posterior spiracles, cephalopharyngeal skeleton, and characteristics of the dorsal spines between the prothorax and mesothorax. In the third instar specifically, morphological information on L. porphyrina showed several features that are shared by L. cuprina, and therefore need certain identification to distinguish between them. Such key features are (1) greater posterior spiracle, (2) apparent inner projection between the middle and lower slits of the posterior spiracle, and (3) strongly sclerotized peritreme. The number of papillae on the anterior spiracle may be a supplement, five to nine and three to six in L. porphyrina and L. cuprina, respectively. The key for identifying third instar of forensically important flies in Thailand has been updated to include L. porphyrina.

  3. Bumble Bees (Hymenoptera: Apidae: Bombus spp.) of Interior Alaska: Species Composition, Distribution, Seasonal Biology, and Parasites

    PubMed Central

    Pampell, Rehanon; Pantoja, Alberto; Holloway, Patricia; Knight, Charles; Ranft, Richard

    2015-01-01

    Abstract Background Despite the ecological and agricultural significance of bumble bees in Alaska, very little is known and published about this important group at the regional level. The objectives of this study were to provide baseline data on species composition, distribution, seasonal biology, and parasites of the genus Bombus at three major agricultural locations within Alaska: Fairbanks, Delta Junction, and Palmer, to lay the groundwork for future research on bumble bee pollination in Alaska. New information A total of 8,250 bumble bees representing 18 species was collected from agricultural settings near Delta Junction, Fairbanks, and Palmer, Alaska in 2009 and 2010. Of the 8,250 specimens, 51% were queens, 32.7% were workers, and 16.2% were males. The species composition and relative abundances varied among sites and years. Delta Junction had the highest relative abundance of bumble bees, representing 51.6% of the specimens collected; the other two locations, Fairbanks and Palmer represented 26.5% and 21.8% of the overall catch respectively. The species collected were: Bombus bohemicus Seidl 1837 (= B. ashtoni (Cresson 1864)), B. balteatus Dahlbom 1832, B. bifarius Cresson 1878, B. centralis Cresson 1864, B. cryptarum (Fabricius 1775) (=B. moderatus Cresson 1863), B. distinguendus Morawitz 1869, B. flavidus Eversmann 1852 (=B. fernaldae Franklin 1911), B. flavifrons Cresson 1863, B. frigidus Smith 1854, B. insularis (Smith 1861), B. jonellus (Kirby 1802), B. melanopygus Nylander 1848, B. mixtus Cresson 1878, B. neoboreus Sladen 1919, B. occidentalis Greene 1858, B. perplexus Cresson 1863, B. rufocinctus Cresson 1863, and B. sylvicola Kirby 1837. Overall, the most common bumble bees near agricultural lands were B. centralis, B. frigidus, B. jonellus, B. melanopygus, B. mixtus, and B. occidentalis. Species' relative population densities and local diversity were highly variable from year to year. Bombus occidentalis, believed to be in decline in the Pacific

  4. Lutte biologique pour l’agriculture et l’environnement américains Biological Control for American Agriculture and the Environment

    USDA-ARS?s Scientific Manuscript database

    The European Biological Control Laboratory (EBCL), located on the Agropolis Campus, is operated by the United States Department of Agriculture to conduct research on biological control of invasive arthropods and plants. Many of the target species originated in Europe, Asia or Africa, so we explore ...

  5. Endangered Species: Pesticide Restrictions

    EPA Pesticide Factsheets

    Our goal is to protect threatened and endangered species and their habitats, without placing unnecessary burden on agriculture and pesticide users. Pesticide limitations are developed to ensure safe use of pesticides in order to meet this goal.

  6. Structure and species composition of novel forests dominated by an introduced species in northcentral Puerto Rico

    Treesearch

    Oscar J. Abelleira Martinez; Mariela A. Rodríguez; Ivonne Rosario; Nataly Soto; Armando López; Ariel E. Lugo

    2010-01-01

    The African tulip tree, Spathodea campanulata Beauv., is an introduced species forming novel forest types in Puerto Rico. These forests develop naturally after deforestation, agricultural use and land abandonment, and there are many questions as to their ecological characteristics. We sampled structure and species composition of large, small, and juvenile trees (C10,...

  7. 7 CFR 1205.317 - Cotton-Importer organization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 10 2011-01-01 2011-01-01 false Cotton-Importer organization. 1205.317 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.317 Cotton-Importer...

  8. 7 CFR 1205.317 - Cotton-Importer organization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 10 2013-01-01 2013-01-01 false Cotton-Importer organization. 1205.317 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.317 Cotton-Importer...

  9. 7 CFR 1205.317 - Cotton-Importer organization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Cotton-Importer organization. 1205.317 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.317 Cotton-Importer...

  10. 7 CFR 1205.317 - Cotton-Importer organization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 10 2012-01-01 2012-01-01 false Cotton-Importer organization. 1205.317 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.317 Cotton-Importer...

  11. 7 CFR 1205.317 - Cotton-Importer organization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 10 2014-01-01 2014-01-01 false Cotton-Importer organization. 1205.317 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.317 Cotton-Importer...

  12. A Comparison of Honey Bee-Collected Pollen From Working Agricultural Lands Using Light Microscopy and ITS Metabarcoding.

    PubMed

    Smart, M D; Cornman, R S; Iwanowicz, D D; McDermott-Kubeczko, M; Pettis, J S; Spivak, M S; Otto, C R V

    2017-02-01

    Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has not been tested on a spatially or temporally robust number of pollen samples. Here, we compare pollen identification results derived from light microscopy and DNA sequencing techniques with samples collected from honey bee colonies embedded within a gradient of intensive agricultural landscapes in the Northern Great Plains throughout the 2010-2011 growing seasons. We demonstrate that at all taxonomic levels, DNA sequencing was able to discern a greater number of taxa, and was particularly useful for the identification of infrequently detected species. Importantly, substantial phenological overlap did occur for commonly detected taxa using either technique, suggesting that DNA sequencing is an appropriate, and enhancing, substitutive technique for accurately capturing the breadth of bee-collected species of pollen present across agricultural landscapes. We also show that honey bees located in high and low intensity agricultural settings forage on dissimilar plants, though with overlap of the most abundantly collected pollen taxa. We highlight practical applications of utilizing sequencing technology, including addressing ecological issues surrounding land use, climate change, importance of taxa relative to abundance, and evaluating the impact of conservation program habitat enhancement efforts. Published by Oxford University Press on behalf of Entomological Society of America 2016. This work is written by US Government employees and is in the public domain in the US.

  13. Developing Curriculum Markers for Agricultural Extension Education in South Africa

    ERIC Educational Resources Information Center

    Worth, S. H.

    2008-01-01

    Sufficient changes have occurred in both the agricultural and educational sectors of South Africa to warrant a careful scrutiny of the agricultural education offerings in South Africa. Agricultural extension is identified as an important part of the intended transformation of the agricultural sector. Further, agricultural extension is essentially…

  14. A commentary on domestic animals as dual-purpose models that benefit agricultural and biomedical research.

    PubMed

    Ireland, J J; Roberts, R M; Palmer, G H; Bauman, D E; Bazer, F W

    2008-10-01

    Research on domestic animals (cattle, swine, sheep, goats, poultry, horses, and aquatic species) at land grant institutions is integral to improving the global competitiveness of US animal agriculture and to resolving complex animal and human diseases. However, dwindling federal and state budgets, years of stagnant funding from USDA for the Competitive State Research, Education, and Extension Service National Research Initiative (CSREES-NRI) Competitive Grants Program, significant reductions in farm animal species and in numbers at land grant institutions, and declining enrollment for graduate studies in animal science are diminishing the resources necessary to conduct research on domestic species. Consequently, recruitment of scientists who use such models to conduct research relevant to animal agriculture and biomedicine at land grant institutions is in jeopardy. Concerned stakeholders have addressed this critical problem by conducting workshops, holding a series of meetings with USDA and National Institutes of Health (NIH) officials, and developing a white paper to propose solutions to obstacles impeding the use of domestic species as dual-purpose animal models for high-priority problems common to agriculture and biomedicine. In addition to shortfalls in research support and human resources, overwhelming use of mouse models in biomedicine, lack of advocacy from university administrators, long-standing cultural barriers between agriculture and human medicine, inadequate grantsmanship by animal scientists, and a scarcity of key reagents and resources are major roadblocks to progress. Solutions will require a large financial enhancement of USDA's Competitive Grants Program, educational programs geared toward explaining how research using agricultural animals benefits both animal agriculture and human health, and the development of a new mind-set in land grant institutions that fosters greater cooperation among basic and applied researchers. Recruitment of

  15. Exploring Agricultural Drainage's Influence on Wetland and ...

    EPA Pesticide Factsheets

    Artificial agricultural drainage (i.e. surface ditches or subsurface tile) is an important agricultural management tool. Artificial drainage allows for timely fieldwork and adequate root aeration, resulting in greater crop yields for farmers. This practice is widespread throughout many regions of the United States and the network of artificial drainage is especially extensive in flat, poorly-drained regions like the glaciated Midwest. While beneficial for crop yields, agricultural drains often empty into streams within the natural drainage system. The increased network connectivity may lead to greater contributing area for watersheds, altered hydrology and increased conveyance of pollutants into natural water bodies. While studies and models at broader scales have implicated artificial drainage as an important driver of hydrological shifts and eutrophication, the actual spatial extent of artificial drainage is poorly known. Consequently, metrics of wetland and watershed connectivity within agricultural regions often fail to explicitly include artificial drainage. We use recent agricultural census data, soil drainage data, and land cover data to create estimates of potential agricultural drainage across the United States. We estimate that agricultural drainage in the US is greater than 31 million hectares and is concentrated in the upper Midwest Corn Belt, covering greater than 50% of available land for 114 counties. Estimated drainage values for numerous countie

  16. Bird use of agricultural fields under reduced and conventional tillage in the Texas Panhandle

    USGS Publications Warehouse

    Flickinger, Edward L.; Pendleton, G.W.

    1994-01-01

    We conducted bird surveys in reduced-tillage and conventional tillage fields in spring, summer, fall, and winter from 1987 to 1991 in the Texas Panhandle. Eastern meadowlarks, longspurs, and savannah sparrows were more common in reduced-tillage (sorghum and wheat stubble) fields than in conventionally tilled (plowed) fields in at least 1 season. Other species also had patterns suggestive of greater abundance in reduced-tillage fields. Hornedlarks, which prefer habitat with sparse vegetation, were more abundant in plowed fields in all seasons except summer. Bird diversity was greater in reduced-tillage fields than in conventionally tilled fields in summer. Cover density and height were greater in reduced tillage fields in all seasons except spring. Cover density and height rather than cover composition (e.g.,grain stubble or live plants) seemed to be the important factors affecting bird distribution. Patterns of bird abundance between sorghum and wheat stubble fields also were dependent on cover. Herbicide use was not greater in reduced-tillage fields than in conventionally tilled fields. Reduced-tillage agriculture for sorghum and wheat farming should be encouraged in the southern Great Plains as a means of improving the attractiveness of agricultural land to many bird species.

  17. Modeling Spatial and Temporal Variability in Ammonia Emissions from Agricultural Fertilization

    NASA Astrophysics Data System (ADS)

    Balasubramanian, S.; Koloutsou-Vakakis, S.; Rood, M. J.

    2013-12-01

    Ammonia (NH3), is an important component of the reactive nitrogen cycle and a precursor to formation of atmospheric particulate matter (PM). Predicting regional PM concentrations and deposition of nitrogen species to ecosystems requires representative emission inventories. Emission inventories have traditionally been developed using top down approaches and more recently from data assimilation based on satellite and ground based ambient concentrations and wet deposition data. The National Emission Inventory (NEI) indicates agricultural fertilization as the predominant contributor (56%) to NH3 emissions in Midwest USA, in 2002. However, due to limited understanding of the complex interactions between fertilizer usage, farm practices, soil and meteorological conditions and absence of detailed statistical data, such emission estimates are currently based on generic emission factors, time-averaged temporal factors and coarse spatial resolution. Given the significance of this source, our study focuses on developing an improved NH3 emission inventory for agricultural fertilization at finer spatial and temporal scales for air quality modeling studies. Firstly, a high-spatial resolution 4 km x 4 km NH3 emission inventory for agricultural fertilization has been developed for Illinois by modifying spatial allocation of emissions based on combining crop-specific fertilization rates with cropland distribution in the Sparse Matrix Operator Kernel Emissions model. Net emission estimates of our method are within 2% of NEI, since both methods are constrained by fertilizer sales data. However, we identified localized crop-specific NH3 emission hotspots at sub-county resolutions absent in NEI. Secondly, we have adopted the use of the DeNitrification-DeComposition (DNDC) Biogeochemistry model to simulate the physical and chemical processes that control volatilization of nitrogen as NH3 to the atmosphere after fertilizer application and resolve the variability at the hourly scale

  18. Relative importance of current and past landscape structure and local habitat conditions for plant species richness in dry grassland-like forest openings.

    PubMed

    Husáková, Iveta; Münzbergová, Zuzana

    2014-01-01

    In fragmented landscapes, plant species richness may depend not only on local habitat conditions but also on landscape structure. In addition, both present and past landscape structure may be important for species richness. There are, however, only a few studies that have investigated the relative importance of all of these factors. The aim of this study was to examine the effect of current and past landscape structures and habitat conditions on species richness at dry grassland-like forest openings in a forested landscape and to assess their relative importance for species richness. We analyzed information on past and present landscape structures using aerial photographs from 1938, 1973, 1988, 2000 and 2007. We calculated the area of each locality and its isolation in the present and in the past and the continuity of localities in GIS. At each locality, we recorded all vascular plant species (296 species in 110 forest openings) and information on abiotic conditions of the localities. We found that the current species richness of the forest openings was significantly determined by local habitat conditions as well as by landscape structure in the present and in the past. The highest species richness was observed on larger and more heterogeneous localities with rocks and shallow soils, which were already large and well connected to other localities in 1938. The changes in the landscape structure in the past can thus have strong effects on current species richness. Future studies attempting to understand determinants of species diversity in fragmented landscapes should also include data on past landscape structure, as it may in fact be more important than the present structure.

  19. Agricultural use of wetlands: opportunities and limitations

    PubMed Central

    Verhoeven, Jos T. A.; Setter, Tim L.

    2010-01-01

    Background Wetlands are species-rich habitats performing valuable ecosystem services such as flood protection, water quality enhancement, food chain support and carbon sequestration. Worldwide, wetlands have been drained to convert them into agricultural land or industrial and urban areas. A realistic estimate is that 50 % of the world's wetlands have been lost. Scope This paper reviews the relationship between wetlands and agriculture with the aim to identify the successes and failures of agricultural use in different types of wetlands, with reference to short-term and long-term benefits and issues of sustainability. It also addresses a number of recent developments which will lead to pressure to reclaim and destroy natural wetlands, i.e. the continuous need for higher production to feed an increasing world population and the increasing cultivation of energy crops. Finally, attention is paid to the development of more flood-tolerant crop cultivars. Conclusions Agriculture has been carried out in several types of (former) wetlands for millennia, with crop fields on river floodplain soils and rice fields as major examples. However, intensive agricultural use of drained/reclaimed peatlands has been shown to lead to major problems because of the oxidation and subsidence of the peat soil. This does not only lead to severe carbon dioxide emissions, but also results in low-lying land which needs to be protected against flooding. Developments in South-East Asia, where vast areas of tropical peatlands are being converted into oil palm plantations, are of great concern in this respect. Although more flood-tolerant cultivars of commercial crop species are being developed, these are certainly not suitable for cultivation in wetlands with prolonged flooding periods, but rather will survive relatively short periods of waterlogging in normally improved agricultural soils. From a sustainability perspective, reclamation of peatlands for agriculture should be strongly discouraged

  20. Agriculture: Agriculture and Air Quality

    EPA Pesticide Factsheets

    Information on air emissions from agricultural practices, types of agricultural burning, air programs that may apply to agriculture, reporting requirements, and links to state and other federal air-quality information.

  1. The Medicago sativa Gene Index 1.2: A web-accessible expression atlas of two Medicago sativa sub-species

    USDA-ARS?s Scientific Manuscript database

    Alfalfa is an important crop, both financially and ecologically, in the agricultural system of the United States. Using Illumina RNA-seq technology we have developed a de-novo transcriptome assembly from two Medicago sativa sub-species, sativa (B47) and falcata (F56). These two genotypes have proven...

  2. 7 CFR 1463.201 - Refunds of importer assessments.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Refunds of importer assessments. 1463.201 Section 1463.201 Agriculture Regulations of the Department of Agriculture (Continued) COMMODITY CREDIT CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS 2005-2014 TOBACCO TRANSITION...

  3. 7 CFR 944.700 - Fresh prune import regulation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing....700 Fresh prune import regulation. (a) Pursuant to section 8e of the Agricultural Marketing Agreement... means release from custody of the United States Customs Service. (g) Inspection and certification...

  4. Ecosystem services and agriculture: tradeoffs and synergies

    PubMed Central

    Power, Alison G.

    2010-01-01

    Agricultural ecosystems provide humans with food, forage, bioenergy and pharmaceuticals and are essential to human wellbeing. These systems rely on ecosystem services provided by natural ecosystems, including pollination, biological pest control, maintenance of soil structure and fertility, nutrient cycling and hydrological services. Preliminary assessments indicate that the value of these ecosystem services to agriculture is enormous and often underappreciated. Agroecosystems also produce a variety of ecosystem services, such as regulation of soil and water quality, carbon sequestration, support for biodiversity and cultural services. Depending on management practices, agriculture can also be the source of numerous disservices, including loss of wildlife habitat, nutrient runoff, sedimentation of waterways, greenhouse gas emissions, and pesticide poisoning of humans and non-target species. The tradeoffs that may occur between provisioning services and other ecosystem services and disservices should be evaluated in terms of spatial scale, temporal scale and reversibility. As more effective methods for valuing ecosystem services become available, the potential for ‘win–win’ scenarios increases. Under all scenarios, appropriate agricultural management practices are critical to realizing the benefits of ecosystem services and reducing disservices from agricultural activities. PMID:20713396

  5. Hidden species diversity in Sylvirana nigrovittata (Amphibia: Ranidae) highlights the importance of taxonomic revisions in biodiversity conservation

    PubMed Central

    Stuart, Bryan L.

    2018-01-01

    Accurately delimiting species and their geographic ranges is imperative for conservation, especially in areas experiencing rapid habitat loss. Southeast Asia currently has one of the highest rates of deforestation in the world, is home to multiple biodiversity hotspots, and the majority of its countries have developing economies with limited resources for biodiversity conservation. Thus, accurately delimiting species and their ranges is particularly important in this region. We examined genetic and morphological variation in the widespread frog species Sylvirana nigrovittata (and its long-treated junior synonym S. mortenseni) with the goal of clarifying its taxonomic content and geographic range boundaries for conservation. We present evidence that the current concept of S. nigrovittata contains at least eight species, two of which are each known from only two localities, but that S. mortenseni is more geographically widespread than currently realized. Five of these species are described as new to science. PMID:29538432

  6. 7 CFR 999.100 - Regulation governing imports of walnuts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Regulation governing imports of walnuts. 999.100 Section 999.100 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE...

  7. Food and Agricultural Imports from China

    DTIC Science & Technology

    2007-07-17

    2006. Among the product categories that at least doubled in volume during the period were live animals, wine/ beer , fruit/vegetable juices, wheat...product had complied with safe manufacturing practices (e.g., HACCP for low acid canned foods or seafoods).22 Refusals of Imports from China Of the 720...Phytosanitary Measures,” Choices, 1st quarter 2007. 30 Calvin. 31 Dong. 32 FDA information on HACCP is at [http://www.cfsan.fda.gov/~lrd/haccp.html]. 33

  8. Aspergillus Species and Their Associated Mycotoxins.

    PubMed

    Perrone, Giancarlo; Gallo, Antonia

    2017-01-01

    The genus Aspergillus is among the most abundant and widely distributed organism on earth, and at the moment comprises 339 known species. It is one of the most important economically fungal genus and the biotechnological use of Aspergillus species is related to production of soy sauce, of different hydrolytic enzymes (amylases, lipases) and organic acid (citric acid, gluconic acid), as well as biologically active metabolites such as lovastatin. Although they are not considered to be major cause of plant diseases, Aspergillus species are responsible for several disorders in various plants and plant products, especially as opportunistic storage moulds. The notable consequence of their presence is contamination of foods and feeds by mycotoxins, among which the most important are aflatoxins, ochratoxin A, and, at a less extent, fumonisins. Aflatoxins B 1 , B 2 , G 1 , G 2 are the most toxic and carcinogenic mycotoxins, due to their extreme hepatocarcinogenicity; ochratoxin A is a potent nephrotoxin, it is also carcinogenic, teratogenic, and immunotoxic in rats and possibly in humans; fumonisins are hepatotoxic and nephrotoxic with potential carcinogenic effects on rat and mice. In this chapter we summarize the main aspects of morphology, ecology, epidemiology, and toxigenicity of Aspergillus foodborne pathogens which belong to sections Flavi, Circumdati, and Nigri, occurring in several agricultural products and responsible of aflatoxin, ochratoxin A, and fumonisins contamination of food and feed.

  9. Substrate degradation and nutrient enrichment structuring macroinvertebrate assemblages in agriculturally dominated Lake Chaohu Basins, China.

    PubMed

    Zhang, You; Cheng, Long; Tolonen, Katri E; Yin, Hongbin; Gao, Junfeng; Zhang, Zhiming; Li, Kuanyi; Cai, Yongjiu

    2018-06-15

    Rapid agricultural development has induced severe environmental problems to freshwater ecosystems. In this study, we aimed to examine the structure and environmental determinants of macroinvertebrate assemblages in an agriculture dominated Lake Chaohu Basin, China. A cluster analysis of the macroinvertebrate communities identified four groups of sites that were characterized by significantly different macroinvertebrate species. These four groups of sites had concentric spatial distribution patterns that followed the variation in the environmental conditions from the less anthropogenically disturbed headwaters towards the more anthropogenically disturbed lower reaches of the rivers and the Lake Chaohu. Moreover, taxa richness decreased from the headwaters towards the Lake Chaohu. The increasing practice of agriculture has reduced the abundances and richness of pollution sensitive species while opposite effects on pollution tolerant species. The study identified substrate heterogeneity and nutrient concentrations as the key environmental factors regulating the changes in the macroinvertebrate communities. We propose that particular attentions should be paid to reduce the nutrient enrichment and habitat degradation in the Lake Chaohu Basin and similar agriculture dominated basins. Copyright © 2018 Elsevier B.V. All rights reserved.

  10. Ultrasonic Sensing of Plant Water Needs for Agriculture

    PubMed Central

    Gómez Álvarez-Arenas, Tomas; Gil-Pelegrin, Eustaquio; Ealo Cuello, Joao; Fariñas, Maria Dolores; Sancho-Knapik, Domingo; Collazos Burbano, David Alejandro; Peguero-Pina, Jose Javier

    2016-01-01

    Fresh water is a key natural resource for food production, sanitation and industrial uses and has a high environmental value. The largest water use worldwide (~70%) corresponds to irrigation in agriculture, where use of water is becoming essential to maintain productivity. Efficient irrigation control largely depends on having access to reliable information about the actual plant water needs. Therefore, fast, portable and non-invasive sensing techniques able to measure water requirements directly on the plant are essential to face the huge challenge posed by the extensive water use in agriculture, the increasing water shortage and the impact of climate change. Non-contact resonant ultrasonic spectroscopy (NC-RUS) in the frequency range 0.1–1.2 MHz has revealed as an efficient and powerful non-destructive, non-invasive and in vivo sensing technique for leaves of different plant species. In particular, NC-RUS allows determining surface mass, thickness and elastic modulus of the leaves. Hence, valuable information can be obtained about water content and turgor pressure. This work analyzes and reviews the main requirements for sensors, electronics, signal processing and data analysis in order to develop a fast, portable, robust and non-invasive NC-RUS system to monitor variations in leaves water content or turgor pressure. A sensing prototype is proposed, described and, as application example, used to study two different species: Vitis vinifera and Coffea arabica, whose leaves present thickness resonances in two different frequency bands (400–900 kHz and 200–400 kHz, respectively), These species are representative of two different climates and are related to two high-added value agricultural products where efficient irrigation management can be critical. Moreover, the technique can also be applied to other species and similar results can be obtained. PMID:27428968

  11. Ultrasonic Sensing of Plant Water Needs for Agriculture.

    PubMed

    Gómez Álvarez-Arenas, Tomas; Gil-Pelegrin, Eustaquio; Ealo Cuello, Joao; Fariñas, Maria Dolores; Sancho-Knapik, Domingo; Collazos Burbano, David Alejandro; Peguero-Pina, Jose Javier

    2016-07-14

    Fresh water is a key natural resource for food production, sanitation and industrial uses and has a high environmental value. The largest water use worldwide (~70%) corresponds to irrigation in agriculture, where use of water is becoming essential to maintain productivity. Efficient irrigation control largely depends on having access to reliable information about the actual plant water needs. Therefore, fast, portable and non-invasive sensing techniques able to measure water requirements directly on the plant are essential to face the huge challenge posed by the extensive water use in agriculture, the increasing water shortage and the impact of climate change. Non-contact resonant ultrasonic spectroscopy (NC-RUS) in the frequency range 0.1-1.2 MHz has revealed as an efficient and powerful non-destructive, non-invasive and in vivo sensing technique for leaves of different plant species. In particular, NC-RUS allows determining surface mass, thickness and elastic modulus of the leaves. Hence, valuable information can be obtained about water content and turgor pressure. This work analyzes and reviews the main requirements for sensors, electronics, signal processing and data analysis in order to develop a fast, portable, robust and non-invasive NC-RUS system to monitor variations in leaves water content or turgor pressure. A sensing prototype is proposed, described and, as application example, used to study two different species: Vitis vinifera and Coffea arabica, whose leaves present thickness resonances in two different frequency bands (400-900 kHz and 200-400 kHz, respectively), These species are representative of two different climates and are related to two high-added value agricultural products where efficient irrigation management can be critical. Moreover, the technique can also be applied to other species and similar results can be obtained.

  12. Functional importance of GLP-1 receptor species and expression levels in cell lines.

    PubMed

    Knudsen, Lotte Bjerre; Hastrup, Sven; Underwood, Christina Rye; Wulff, Birgitte Schjellerup; Fleckner, Jan

    2012-04-10

    Of the mammalian species, only the GLP-1 receptors of rat and human origin have been described and characterized. Here, we report the cloning of the homologous GLP-1 receptors from mouse, rabbit, pig, cynomolgus monkey and chimp. The GLP-1 receptor is highly conserved across species, thus underlining the physiological importance of the peptide hormone and its receptor across a wide range of mammals. We expressed the receptors by stable transfection of BHK cells, both in cell lines with high expression levels of the cloned receptors, as well as in cell lines with lower expression levels, more comparable to endogenous expression of these receptors. High expression levels of cloned GLP-1 receptors markedly increased the potency of GLP-1 and other high affinity ligands, whereas the K(d) values were not affected. For a low affinity ligand like the ago-allosteric modulator Compound 2, expression levels of the human GLP-1 receptor were important for maximal efficacy as well as potency. The two natural metabolites of GLP-1, GLP-1(9-37) and GLP-1(9-36)amide were agonists when tested on a cell line with high expression of the recombinant human GLP-1 receptor, whereas they behaved as (low potent) antagonists on a cell line that expressed the receptor endogenously, as well as cells expressing a moderate level of the recombinant human GLP-1 receptor. The amide form was a more potent agonist than the free acid from. In conclusion, receptor expression level is an important parametre for selecting cell lines with cloned GLP-1 receptors for functional characterization of physiological and pharmaceutical ligands. Copyright © 2011 Elsevier B.V. All rights reserved.

  13. 7 CFR 355.21 - Marking and mailing requirements for plants imported, exported, or reexported by mail. 5

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ENDANGERED SPECIES REGULATIONS CONCERNING TERRESTRIAL PLANTS Inspections and Related Provisions § 355.21 Marking and...) Genus and species, and quantity of each (if a hybrid, genus of each parent, and quantity of each hybrid...

  14. 7 CFR 355.21 - Marking and mailing requirements for plants imported, exported, or reexported by mail. 5

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ENDANGERED SPECIES REGULATIONS CONCERNING TERRESTRIAL PLANTS Inspections and Related Provisions § 355.21 Marking and...) Genus and species, and quantity of each (if a hybrid, genus of each parent, and quantity of each hybrid...

  15. 7 CFR 355.21 - Marking and mailing requirements for plants imported, exported, or reexported by mail. 5

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ENDANGERED SPECIES REGULATIONS CONCERNING TERRESTRIAL PLANTS Inspections and Related Provisions § 355.21 Marking and...) Genus and species, and quantity of each (if a hybrid, genus of each parent, and quantity of each hybrid...

  16. 7 CFR 355.21 - Marking and mailing requirements for plants imported, exported, or reexported by mail. 5

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ENDANGERED SPECIES REGULATIONS CONCERNING TERRESTRIAL PLANTS Inspections and Related Provisions § 355.21 Marking and...) Genus and species, and quantity of each (if a hybrid, genus of each parent, and quantity of each hybrid...

  17. 7 CFR 355.21 - Marking and mailing requirements for plants imported, exported, or reexported by mail. 5

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ENDANGERED SPECIES REGULATIONS CONCERNING TERRESTRIAL PLANTS Inspections and Related Provisions § 355.21 Marking and...) Genus and species, and quantity of each (if a hybrid, genus of each parent, and quantity of each hybrid...

  18. An updated checklist of the Culicidae (Diptera) of Morocco, with notes on species of historical and current medical importance.

    PubMed

    Trari, Bouchra; Dakki, Mohamed; Harbach, Ralph E

    2017-06-01

    An updated checklist of the mosquito species (Diptera: Culicidae) recorded in Morocco from 1916 to 2016 is provided, including synonyms and synonymous usage for each species. Forty-three species belonging to seven genera are recorded so far: Anopheles (9), Aedes (12) Coquillettidia (2), Culex (12), Culiseta (5), Orthopodomyia (1) and Uranotaenia (2). Traditional and equivalent names in the polyphyletic concept of Aedes are provided for the aedine species. The historical importance and current potential threat of mosquitoes to human health in Morocco is reviewed. © 2017 The Society for Vector Ecology.

  19. Use of DNA Barcodes to Identify Invasive Armyworm Spodoptera Species in Florida

    PubMed Central

    Nagoshi, Rodney N.; Brambila, Julieta; Meagher, Robert L.

    2011-01-01

    A critical component for sustaining adequate food production is the protection of local agriculture from invasive pest insects. Essential to this goal is the ability to accurately distinguish foreign from closely related domestic species, a process that has traditionally required identification using diagnostic morphological “keys” that can be both subtle and labor-intensive. This is the case for the Lepidopteran group of insects represented by Spodoptera, a genus of Noctuidae “armyworm” moths that includes several important agricultural pests. Two of the most destructive species, Spodoptera littoralis (Boisduval) (Lepidoptera: Noctuidae) and S. litura (F.) are not yet established in North America. To facilitate the monitoring for these pests, the feasibility of using DNA barcoding methodology for distinguishing between domestic and foreign Spodoptera species was tested. A DNA barcoding database was derived for a subset of Spodoptera species native to Florida, with an emphasis on those attracted to pheromone blends developed for S. litura or S. littoralis. These were then compared to the barcode sequences of S. litura collected from Taiwan and S. littoralis from Portugal. Consistent discrimination of the different species was obtained with phenetic relationships produced that were generally in agreement with phylogenetic studies using morphological characteristics. The data presented here indicate that DNA barcoding has the potential to be an efficient and accurate supplement to morphological methods for the identification of invasive Spodoptera pests in North America. PMID:22239735

  20. Estimation of soil erosion risk within an important agricultural sub-watershed in Bursa, Turkey, in relation to rapid urbanization.

    PubMed

    Ozsoy, Gokhan; Aksoy, Ertugrul

    2015-07-01

    This paper integrates the Revised Universal Soil Loss Equation (RUSLE) with a GIS model to investigate the spatial distribution of annual soil loss and identify areas of soil erosion risk in the Uluabat sub-watershed, an important agricultural site in Bursa Province, Turkey. The total soil loss from water erosion was 473,274 Mg year(-1). Accordingly, 60.3% of the surveyed area was classified into a very low erosion risk class while 25.7% was found to be in high and severe erosion risk classes. Soil loss had a close relationship with land use and topography. The most severe erosion risk typically occurs on ridges and steep slopes where agriculture, degraded forest, and shrubs are the main land uses and cover types. Another goal of this study was to use GIS to reveal the multi-year urbanization status caused by rapid urbanization that constitutes another soil erosion risk in this area. Urbanization has increased by 57.7% and the most areal change was determined in class I lands at a rate of 80% over 25 years. Urbanization was identified as one of the causes of excessive soil loss in the study area.

  1. Hyperspectral remote sensing tools for quantifying plant litter and invasive species in arid ecosystems

    USGS Publications Warehouse

    Nagler, Pamela L.; Sridhar, B.B. Maruthi; Olsson, Aaryn Dyami; Glenn, Edward P.; van Leeuwen, Willem J.D.; Thenkabail, Prasad S.; Huete, Alfredo; Lyon, John G.

    2012-01-01

    Green vegetation can be distinguished using visible and infrared multi-band and hyperspectral remote sensing methods. The problem has been in identifying and distinguishing the non-photosynthetically active radiation (PAR) landscape components, such as litter and soils, and from green vegetation. Additionally, distinguishing different species of green vegetation is challenging using the relatively few bands available on most satellite sensors. This chapter focuses on hyperspectral remote sensing characteristics that aim to distinguish between green vegetation, soil, and litter (or senescent vegetation). Quantifying litter by remote sensing methods is important in constructing carbon budgets of natural and agricultural ecosystems. Distinguishing between plant types is important in tracking the spread of invasive species. Green leaves of different species usually have similar spectra, making it difficult to distinguish between species. However, in this chapter we show that phenological differences between species can be used to detect some invasive species by their distinct patterns of greening and dormancy over an annual cycle based on hyperspectral data. Both applications require methods to quantify the non-green cellulosic fractions of plant tissues by remote sensing even in the presence of soil and green plant cover. We explore these methods and offer three case studies. The first concerns distinguishing surface litter from soil using the Cellulose Absorption Index (CAI), as applied to no-till farming practices where plant litter is left on the soil after harvest. The second involves using different band combinations to distinguish invasive saltcedar from agricultural and native riparian plants on the Lower Colorado River. The third illustrates the use of the CAI and NDVI in time-series analyses to distinguish between invasive buffelgrass and native plants in a desert environment in Arizona. Together the results show how hyperspectral imagery can be applied to

  2. 9 CFR 327.16 - Small importations for importer's own consumption; requirements.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... consumption; requirements. 327.16 Section 327.16 Animals and Animal Products FOOD SAFETY AND INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE AGENCY ORGANIZATION AND TERMINOLOGY; MANDATORY MEAT AND POULTRY... importations for importer's own consumption; requirements. Any product in a quantity of 50 pounds or less which...

  3. Agricultural Management and Climatic Change Are the Major Drivers of Biodiversity Change in the UK

    PubMed Central

    Burns, Fiona; Eaton, Mark A.; Beckmann, Björn C.; Brereton, Tom; Brooks, David R.; Brown, Peter M. J.; Al Fulaij, Nida; Gent, Tony; Henderson, Ian; Noble, David G.; Parsons, Mark; Powney, Gary D.; Roy, Helen E.; Stroh, Peter; Walker, Kevin; Wilkinson, John W.; Wotton, Simon R.; Gregory, Richard D.

    2016-01-01

    Action to reduce anthropogenic impact on the environment and species within it will be most effective when targeted towards activities that have the greatest impact on biodiversity. To do this effectively we need to better understand the relative importance of different activities and how they drive changes in species’ populations. Here, we present a novel, flexible framework that reviews evidence for the relative importance of these drivers of change and uses it to explain recent alterations in species’ populations. We review drivers of change across four hundred species sampled from a broad range of taxonomic groups in the UK. We found that species’ population change (~1970–2012) has been most strongly impacted by intensive management of agricultural land and by climatic change. The impact of the former was primarily deleterious, whereas the impact of climatic change to date has been more mixed. Findings were similar across the three major taxonomic groups assessed (insects, vascular plants and vertebrates). In general, the way a habitat was managed had a greater impact than changes in its extent, which accords with the relatively small changes in the areas occupied by different habitats during our study period, compared to substantial changes in habitat management. Of the drivers classified as conservation measures, low-intensity management of agricultural land and habitat creation had the greatest impact. Our framework could be used to assess the relative importance of drivers at a range of scales to better inform our policy and management decisions. Furthermore, by scoring the quality of evidence, this framework helps us identify research gaps and needs. PMID:27007973

  4. The Importance of Motivational Appeals to Cooperative Extension Agricultural Clientele. Summary of Research.

    ERIC Educational Resources Information Center

    Wilson, Gary; Newcomb, L. H.

    A study was conducted to determine the relationship of certain motivational appeals to the extent of participation of extension clientele, as perceived by these clientele. A stratified random sample of thirty counties from the ten extension supervisory areas of Ohio was used for the study. This sample provided for 395 adult agricultural clientele…

  5. Does avian species richness in natural patch mosaics follow the forest fragmentation paradigm?

    USGS Publications Warehouse

    Pavlacky, D.C.; Anderson, S.H.

    2007-01-01

    As one approaches the north-eastern limit of pinyon (Pinus spp.) juniper (Juniperus spp.) vegetation on the Colorado Plateau, USA, woodland patches become increasingly disjunct, grading into sagebrush (Artemisia spp.)-dominated landscapes. Patterns of avian species richness in naturally heterogeneous forests may or may not respond to patch discontinuity in the same manner as bird assemblages in fragmented agricultural systems. We used observational data from naturally patchy woodlands and predictions derived from studies of human-modified agricultural forests to estimate the effects of patch area, shape, isolation and distance to contiguous woodland on avian species richness. We predicted that patterns of species richness in naturally patchy juniper woodlands would differ from those observed in fragmented agricultural systems. Our objectives were to (1) estimate the effect of naturally occurring patch structure on avian species richness with respect to habitat affinity and migratory strategy and (2) assess the concordance of the effects to predictions from agricultural forest systems. We used the analogy between populations and communities to estimate species richness, where species are treated as individuals in the application of traditional capture-recapture theory. Information-theoretic model selection showed that overall species richness was explained primarily by the species area relationship. There was some support for a model with greater complexity than the equilibrium theory of island biogeography where the isolation of large patches resulted in greater species richness. Species richness of woodland-dwelling birds was best explained by the equilibrium hypothesis with partial landscape complementation by open-country species in isolated patches. Species richness within specific migratory strategies showed concomitant increases and no shifts in species composition along the patch area gradient. Our results indicate that many patterns of species richness

  6. Connectivity in an agricultural landscape as reflected by interpond movements of a freshwater turtle

    USGS Publications Warehouse

    Bowne, D.R.; Bowers, M.A.; Hines, J.E.

    2006-01-01

    Connectivity is a measure of how landscape features facilitate movement and thus is an important factor in species persistence in a fragmented landscape. The scarcity of empirical studies that directly quantify species movement and determine subsequent effects on population density have, however, limited the utility of connectivity measures in conservation planning. We undertook a 4-year study to calculate connectivity based on observed movement rates and movement probabilities for five age-sex classes of painted turtles (Chrysemys picta) inhabiting a pond complex in an agricultural landscape in northern Virginia (U.S.A.). We determined which variables influenced connectivity and the relationship between connectivity and subpopulation density. Interpatch distance and quality of habitat patches influenced connectivity but characteristics of the intervening matrix did not. Adult female turtles were more influenced by the habitat quality of recipient ponds than other age-sex classes. The importance of connectivity on spatial population dynamics was most apparent during a drought. Population density and connectivity were low for one pond in a wet year but dramatically increased as other ponds dried. Connectivity is an important component of species persistence in a heterogeneous landscape and is strongly dependent on the movement behavior of the species. Connectivity may reflect active selection or avoidance of particular habitat patches. The influence of habitat quality on connectivity has often been ignored, but our findings highlight its importance. Conservation planners seeking to incorporate connectivity measures into reserve design should not ignore behavior in favor of purely structural estimates of connectivity.

  7. 7 CFR 29.431 - Handling of imported tobacco pending test results.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 2 2014-01-01 2014-01-01 false Handling of imported tobacco pending test results. 29.431 Section 29.431 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING... tobacco pending test results. After an individual shipment of imported flue-cured or burley tobacco has...

  8. 7 CFR 29.431 - Handling of imported tobacco pending test results.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 2 2013-01-01 2013-01-01 false Handling of imported tobacco pending test results. 29.431 Section 29.431 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING... tobacco pending test results. After an individual shipment of imported flue-cured or burley tobacco has...

  9. Worldwide Dissemination of Radopholus similis and Its Importance in Crop Production

    PubMed Central

    O'Bannon, J. H.

    1977-01-01

    The burrowing nematode, Radopholus similis, attacks agronomic and horticultural crops and many weeds, and is reported to reproduce on more than 250 plant species. Two races of R. similis are recognized. Although one race attacks citrus and the other race does not, they are morphologically similar. At present, the citrus race is found attacking citrus only in Florida, U.S.A., but it is known to infect more than 250 species and varieties of noncitrus plants. Although it has many hosts, R. similis is probably most widely distributed on banana and is found worldwide. Although best known as a pest of Piper nigrum, Musa spp., and Citrus spp., it also attacks many crops that are important in world commerce and in subsistence-type agriculture, a factor which makes it a significant agricultural pest. Worldwide dissemination occurs primarily when parasitized plants are moved into areas where the pest could adapt. Yield losses of 12.5 tons/ha in bananas have been reported from R. similis infection. Infections suppress orange and grapefruit yields as much as 70-80%. Because of the severity of R. similis damage (particularly to banana and citrus), extensive control programs have been developed. Prevention, cultural practices, resistant varieties, and chemical pesticides interact to reduce losses. PMID:19305565

  10. How Are We Educating Agricultural Students? A National Profile of Leadership Capacities and Involvement in College Compared to Non-Agricultural Peers

    ERIC Educational Resources Information Center

    Rosch, David M.; Coers, Natalie

    2013-01-01

    Given the importance of leadership development within the various agricultural professions, a national sample (n = 461) of students with agriculture-related majors from 55 colleges was compared to a similarly-sized random peer group from the same institutions. The data were analyzed to compare the agricultural student sample to their peers with…

  11. Uncertainty in Agricultural Impact Assessment

    NASA Technical Reports Server (NTRS)

    Wallach, Daniel; Mearns, Linda O.; Rivington, Michael; Antle, John M.; Ruane, Alexander C.

    2014-01-01

    This chapter considers issues concerning uncertainty associated with modeling and its use within agricultural impact assessments. Information about uncertainty is important for those who develop assessment methods, since that information indicates the need for, and the possibility of, improvement of the methods and databases. Such information also allows one to compare alternative methods. Information about the sources of uncertainties is an aid in prioritizing further work on the impact assessment method. Uncertainty information is also necessary for those who apply assessment methods, e.g., for projecting climate change impacts on agricultural production and for stakeholders who want to use the results as part of a decision-making process (e.g., for adaptation planning). For them, uncertainty information indicates the degree of confidence they can place in the simulated results. Quantification of uncertainty also provides stakeholders with an important guideline for making decisions that are robust across the known uncertainties. Thus, uncertainty information is important for any decision based on impact assessment. Ultimately, we are interested in knowledge about uncertainty so that information can be used to achieve positive outcomes from agricultural modeling and impact assessment.

  12. Integrating Sensory/Actuation Systems in Agricultural Vehicles

    PubMed Central

    Emmi, Luis; Gonzalez-de-Soto, Mariano; Pajares, Gonzalo; Gonzalez-de-Santos, Pablo

    2014-01-01

    In recent years, there have been major advances in the development of new and more powerful perception systems for agriculture, such as computer-vision and global positioning systems. Due to these advances, the automation of agricultural tasks has received an important stimulus, especially in the area of selective weed control where high precision is essential for the proper use of resources and the implementation of more efficient treatments. Such autonomous agricultural systems incorporate and integrate perception systems for acquiring information from the environment, decision-making systems for interpreting and analyzing such information, and actuation systems that are responsible for performing the agricultural operations. These systems consist of different sensors, actuators, and computers that work synchronously in a specific architecture for the intended purpose. The main contribution of this paper is the selection, arrangement, integration, and synchronization of these systems to form a whole autonomous vehicle for agricultural applications. This type of vehicle has attracted growing interest, not only for researchers but also for manufacturers and farmers. The experimental results demonstrate the success and performance of the integrated system in guidance and weed control tasks in a maize field, indicating its utility and efficiency. The whole system is sufficiently flexible for use in other agricultural tasks with little effort and is another important contribution in the field of autonomous agricultural vehicles. PMID:24577525

  13. Integrating sensory/actuation systems in agricultural vehicles.

    PubMed

    Emmi, Luis; Gonzalez-de-Soto, Mariano; Pajares, Gonzalo; Gonzalez-de-Santos, Pablo

    2014-02-26

    In recent years, there have been major advances in the development of new and more powerful perception systems for agriculture, such as computer-vision and global positioning systems. Due to these advances, the automation of agricultural tasks has received an important stimulus, especially in the area of selective weed control where high precision is essential for the proper use of resources and the implementation of more efficient treatments. Such autonomous agricultural systems incorporate and integrate perception systems for acquiring information from the environment, decision-making systems for interpreting and analyzing such information, and actuation systems that are responsible for performing the agricultural operations. These systems consist of different sensors, actuators, and computers that work synchronously in a specific architecture for the intended purpose. The main contribution of this paper is the selection, arrangement, integration, and synchronization of these systems to form a whole autonomous vehicle for agricultural applications. This type of vehicle has attracted growing interest, not only for researchers but also for manufacturers and farmers. The experimental results demonstrate the success and performance of the integrated system in guidance and weed control tasks in a maize field, indicating its utility and efficiency. The whole system is sufficiently flexible for use in other agricultural tasks with little effort and is another important contribution in the field of autonomous agricultural vehicles.

  14. Conditions Promoting Mycorrhizal Parasitism Are of Minor Importance for Competitive Interactions in Two Differentially Mycotrophic Species

    PubMed Central

    Friede, Martina; Unger, Stephan; Hellmann, Christine; Beyschlag, Wolfram

    2016-01-01

    Interactions of plants with arbuscular mycorrhizal fungi (AMF) may range along a broad continuum from strong mutualism to parasitism, with mycorrhizal benefits received by the plant being determined by climatic and edaphic conditions affecting the balance between carbon costs vs. nutritional benefits. Thus, environmental conditions promoting either parasitism or mutualism can influence the mycorrhizal growth dependency (MGD) of a plant and in consequence may play an important role in plant-plant interactions. In a multifactorial field experiment we aimed at disentangling the effects of environmental and edaphic conditions, namely the availability of light, phosphorus and nitrogen, and the implications for competitive interactions between Hieracium pilosella and Corynephorus canescens for the outcome of the AMF symbiosis. Both species were planted in single, intraspecific and interspecific combinations using a target-neighbor approach with six treatments distributed along a gradient simulating conditions for the interaction between plants and AMF ranking from mutualistic to parasitic. Across all treatments we found mycorrhizal association of H. pilosella being consistently mutualistic, while pronounced parasitism was observed in C. canescens, indicating that environmental and edaphic conditions did not markedly affect the cost:benefit ratio of the mycorrhizal symbiosis in both species. Competitive interactions between both species were strongly affected by AMF, with the impact of AMF on competition being modulated by colonization. Biomass in both species was lowest when grown in interspecific competition, with colonization being increased in the less mycotrophic C. canescens, while decreased in the obligate mycotrophic H. pilosella. Although parasitism-promoting conditions negatively affected MGD in C. canescens, these effects were small as compared to growth decreases related to increased colonization levels in this species. Thus, the lack of plant control over

  15. Global agricultural intensification during climate change: a role for genomics.

    PubMed

    Abberton, Michael; Batley, Jacqueline; Bentley, Alison; Bryant, John; Cai, Hongwei; Cockram, James; de Oliveira, Antonio Costa; Cseke, Leland J; Dempewolf, Hannes; De Pace, Ciro; Edwards, David; Gepts, Paul; Greenland, Andy; Hall, Anthony E; Henry, Robert; Hori, Kiyosumi; Howe, Glenn Thomas; Hughes, Stephen; Humphreys, Mike; Lightfoot, David; Marshall, Athole; Mayes, Sean; Nguyen, Henry T; Ogbonnaya, Francis C; Ortiz, Rodomiro; Paterson, Andrew H; Tuberosa, Roberto; Valliyodan, Babu; Varshney, Rajeev K; Yano, Masahiro

    2016-04-01

    Agriculture is now facing the 'perfect storm' of climate change, increasing costs of fertilizer and rising food demands from a larger and wealthier human population. These factors point to a global food deficit unless the efficiency and resilience of crop production is increased. The intensification of agriculture has focused on improving production under optimized conditions, with significant agronomic inputs. Furthermore, the intensive cultivation of a limited number of crops has drastically narrowed the number of plant species humans rely on. A new agricultural paradigm is required, reducing dependence on high inputs and increasing crop diversity, yield stability and environmental resilience. Genomics offers unprecedented opportunities to increase crop yield, quality and stability of production through advanced breeding strategies, enhancing the resilience of major crops to climate variability, and increasing the productivity and range of minor crops to diversify the food supply. Here we review the state of the art of genomic-assisted breeding for the most important staples that feed the world, and how to use and adapt such genomic tools to accelerate development of both major and minor crops with desired traits that enhance adaptation to, or mitigate the effects of climate change. © 2015 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

  16. DNA-based identification of forensically important species of Sarcophagidae (Insecta: Diptera) from Rio de Janeiro, Brazil.

    PubMed

    Napoleão, K S; Mello-Patiu, C A; Oliveira-Costa, J; Takiya, D M; Silva, R; Moura-Neto, R S

    2016-05-06

    Sarcophagidae, or flesh flies, are of great importance in forensic entomology, but their effective application requires precise taxonomic identification, which relies almost exclusively on characteristics of the male genitalia. Given that female flies and larvae are most abundant in animal carcasses or on corpses, precise morphological identification can be difficult; therefore, DNA sequencing can be an additional tool for use in taxonomic identification. This paper analyzes part of the mitochondrial cytochrome c oxidase subunit I (COI) gene from three Sarcophagidae species of forensic importance in the City of Rio de Janeiro: Oxysarcodexia fluminensis, Peckia chrysostoma, and Peckia intermutans. COI fragments of 400 bp from 36 specimens of these three species were sequenced. No intraspecific differences were found among specimens of O. fluminensis, but P. chrysostoma and P. intermutans each had two haplotypes, ranging from 0 to 0.7%. The interspecific divergence was 8.5-11.6%, corroborating previously reported findings.

  17. Examining shifts in Carabidae assemblages across a forest-agriculture ecotone.

    PubMed

    Leslie, T W; Biddinger, D J; Rohr, J R; Hulting, A G; Mortensen, D A; Fleischer, S J

    2014-02-01

    Northeastern U.S. farms are often situated adjacent to forestland due to the heterogeneous nature of the landscape. We investigated how forested areas influence Carabidae diversity within nearby crop fields by establishing transects of pitfall traps. Trapping extended across a forest-agriculture ecotone consisting of maize, an intermediate mowed grass margin, and a forest edge. Carabidae diversity was compared among the three habitats, and community and population dynamics were assessed along the transect. We used a principal response curve to examine and visualize community change across a spatial gradient. The highest levels of richness and evenness were observed in the forest community, and carabid assemblages shifted significantly across the ecotone, especially at the forest-grass interface. Despite strong ecotone effects, population distributions showed that some species were found in all three habitats and seemed to thrive at the ecotone. Based on similarity indices, carabid assemblages collected in maize adjacent to forest differed from carabid assemblages in maize not adjacent to forest. We conclude that forest carabid assemblages exhibit high degrees of dissimilarity with those found in agricultural fields and forested areas should thus be retained in agricultural landscapes to increase biodiversity at the landscape scale. However, ecotone species found at forest edges can still noticeably influence carabid community composition within neighboring agricultural fields. Further studies should determine how these shifts in carabid assemblages influence agroecosystem services in relation to ecosystem services observed in fields embedded in an agricultural matrix.

  18. Vocational Agriculture Education. Agricultural Mechanics.

    ERIC Educational Resources Information Center

    Smith, Eddie; And Others

    To assist teachers in agricultural mechanics in providing comprehensive instruction to their students, this curriculum guide treats both the mechanical skills and knowlege necessary for this specialized area. Six sections are included, as follow: orientation and safety; agricultural mechanics skills; agricultural power and machinery; agricultural…

  19. Utilization of peatlands as possible land resource for low-input agriculture: cultivation of Vaccinium species as an example

    NASA Astrophysics Data System (ADS)

    Tonutare, Tonu; Rodima, Ako; Rannik, Kaire; Shanskiy, Merrit

    2013-04-01

    The best way of soil protection is its sustainable and expedient use, which secures soils ecological functioning. Recent years, by exploitation of peat soils for their different use, has raised important issues concerning their input to global climate change as important source of greenhouse gases (GHG) emitters. The dynamics of GHG are determined by different factors as: site specific conditions including hydrology, soil type, vegetation, area management, including meteorological and climatic conditions. Therefore, in this current paper we are presenting the study results were we estimated CO2, CH4 and N2O emissions from exhausted cultivated peatland with Vaccinium species and determined the soil chemical composition. For comparision a virgin state peatland was observed. The main goals of the paper are: (1) to present the experimental results of greenhouse gases generation and peat chemical composition (antioxidant activity of peat, C/N ratio, fiber content, water extractable phenolics) relationships on different microsites either on natural plant cover or Vaccinium species cultivation area on exhausted milled peat area; (2) to discuss how peat soil quality contributes to greenhouse gases emission; (3) and what kind of relationship reveals between low input agricultural system in which Vaccinium species are cultivated on exhausted milled peat area. The study are is located in nearby Ilmatsalu (58°23'N, 26°31'E) in South Estonia, inside of which the three microsites are determined. Microsites are different from each other by exploitation and plant cover type. 1). Natural plant cover, 2). Cultivated area with Vaccinium angustifolium x V. corymbosum, 3). Cultivated area with Vaccinium angustifolium. The determined soil type according to WRB was Fibri Dystric Histosol. The main part of study focuses on the analyses of greenhouse gases. For this purpose the closed chamber method was used. The greenhouse gas samples were collected from spring to autumn 2011 throughout

  20. Agricultural Meteorology in China.

    NASA Astrophysics Data System (ADS)

    Rosenberg, Norman J.

    1982-03-01

    During nearly five weeks in China (May-June 1981), the author visited scientific institutions and experiment stations engaged in agricultural meterology and climatology research and teaching. The facilities, studies, and research programs at each institution are described and the scientific work in these fields is evaluated. Agricultural meteorology and climatology are faced with some unique problems and opportunities in China and progress in these fields may be of critical importance to that nation in coming years. The author includes culinary notes and comments on protocol in China.

  1. Genome Resource Banking of Biomedically Important Laboratory Animals

    PubMed Central

    Agca, Yuksel

    2014-01-01

    Genome resource banking (GRB) is the systematic collection, storage, and re-distribution of biomaterials in an organized, logistical, and secure manner. Genome cyrobanks usually contain biomaterials and associated genomic information essential for progression of biomedicine, human health, and research. In that regard, appropriate genome cryobanks could provide essential biomaterials for both current and future research projects in the form of various cell types and tissues, including sperm, oocytes, embryos, embryonic or adult stem cells, induced pluripotent stem cells, and gonadal tissues. In addition to cryobanked germplasm, cryobanking of DNA, serum, blood products, and tissues from scientifically, economically and ecologically important species has become a common practice. For revitalization of the whole organism, cryopreserved germplasm in conjunction with assisted reproductive technologies (ART), offer a powerful approach for research model management, as well as assisting in animal production for agriculture, conservation, and human reproductive medicine. Recently, many developed and developing countries have allocated substantial resources to establish genome resources banks which are responsible for safeguarding scientifically, economically and ecologically important wild type, mutant and transgenic plants, fish, and local livestock breeds, as well as wildlife species. This review is dedicated to the memory of Dr. John K. Critser, who had made profound contributions to the science of cryobiology and establishment of genome research and resources centers for mice, rats and swine. Emphasis will be given to application of GRBs to species with substantial contributions to the advancement of biomedicine and human health. PMID:22981880

  2. Recognizing the importance of the Department of Agriculture Forest Service Experimental Forests and Ranges.

    THOMAS, 111th Congress

    Rep. Childers, Travis [D-MS-1

    2009-04-02

    Senate - 09/16/2009 Received in the Senate and referred to the Committee on Agriculture, Nutrition, and Forestry. (All Actions) Tracker: This bill has the status Agreed to in HouseHere are the steps for Status of Legislation:

  3. Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology

    PubMed Central

    Rogalski, Marcelo; do Nascimento Vieira, Leila; Fraga, Hugo P.; Guerra, Miguel P.

    2015-01-01

    During the evolution of the eukaryotic cell, plastids, and mitochondria arose from an endosymbiotic process, which determined the presence of three genetic compartments into the incipient plant cell. After that, these three genetic materials from host and symbiont suffered several rearrangements, bringing on a complex interaction between nuclear and organellar gene products. Nowadays, plastids harbor a small genome with ∼130 genes in a 100–220 kb sequence in higher plants. Plastid genes are mostly highly conserved between plant species, being useful for phylogenetic analysis in higher taxa. However, intergenic spacers have a relatively higher mutation rate and are important markers to phylogeographical and plant population genetics analyses. The predominant uniparental inheritance of plastids is like a highly desirable feature for phylogeny studies. Moreover, the gene content and genome rearrangements are efficient tools to capture and understand evolutionary events between different plant species. Currently, genetic engineering of the plastid genome (plastome) offers a number of attractive advantages as high-level of foreign protein expression, marker gene excision, gene expression in operon and transgene containment because of maternal inheritance of plastid genome in most crops. Therefore, plastid genome can be used for adding new characteristics related to synthesis of metabolic compounds, biopharmaceutical, and tolerance to biotic and abiotic stresses. Here, we describe the importance and applications of plastid genome as tools for genetic and evolutionary studies, and plastid transformation focusing on increasing the performance of horticultural species in the field. PMID:26284102

  4. Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology.

    PubMed

    Rogalski, Marcelo; do Nascimento Vieira, Leila; Fraga, Hugo P; Guerra, Miguel P

    2015-01-01

    During the evolution of the eukaryotic cell, plastids, and mitochondria arose from an endosymbiotic process, which determined the presence of three genetic compartments into the incipient plant cell. After that, these three genetic materials from host and symbiont suffered several rearrangements, bringing on a complex interaction between nuclear and organellar gene products. Nowadays, plastids harbor a small genome with ∼130 genes in a 100-220 kb sequence in higher plants. Plastid genes are mostly highly conserved between plant species, being useful for phylogenetic analysis in higher taxa. However, intergenic spacers have a relatively higher mutation rate and are important markers to phylogeographical and plant population genetics analyses. The predominant uniparental inheritance of plastids is like a highly desirable feature for phylogeny studies. Moreover, the gene content and genome rearrangements are efficient tools to capture and understand evolutionary events between different plant species. Currently, genetic engineering of the plastid genome (plastome) offers a number of attractive advantages as high-level of foreign protein expression, marker gene excision, gene expression in operon and transgene containment because of maternal inheritance of plastid genome in most crops. Therefore, plastid genome can be used for adding new characteristics related to synthesis of metabolic compounds, biopharmaceutical, and tolerance to biotic and abiotic stresses. Here, we describe the importance and applications of plastid genome as tools for genetic and evolutionary studies, and plastid transformation focusing on increasing the performance of horticultural species in the field.

  5. Implications of changing spatial dynamics of irrigated pasture, California's third largest agricultural water use.

    PubMed

    Shapero, Matthew; Dronova, Iryna; Macaulay, Luke

    2017-12-15

    Irrigated agriculture is practiced on 680 million acres worldwide. Irrigated grazing land is likely a significant portion of that area but estimating an accurate figure has remained problematic. Due to its significant contribution to agricultural water use worldwide, we develop a methodology to remotely sense irrigated pasture using a California case study. Irrigated pasture is the third largest agricultural water use in California, yet its economic returns are low. As pressures mount for the agricultural sector to be more water efficient and for water to be directed towards its most economically valuable uses, there will likely be a reduction in irrigated pasture acreage. A first step in understanding the importance of irrigated pasture in California is establishing a methodology to quantify baseline information about its area, location, and current rate of loss. This study used a novel object-based image analysis and supervised classification on publicly-available, high resolution, remote sensing National Agriculture Imaging Program (NAIP) imagery to develop a highly accurate map of irrigated pasture in a rural county in California's Sierra foothills. Irrigated pasture was found to have decreased by 19% during the ten-year period, 2005-2014, from 4,273 to 3,470 acres. The implications of this loss include potential impacts to wetland-dependent species, groundwater recharge, game species, traditional ranching culture, livestock production, and land conservation. Overall accuracy in classification across years was consistently over 89%. Comparing these results against available measurements of irrigated pasture provided by state and federal agencies reveals that this method significantly improves upon existing metrics and methods of data collection and points to critical needs for new targeted research and monitoring efforts. Broadly, the analysis presented here provides an improved methodology for mapping irrigated pasture that can be extended to provide accurate

  6. Focal species candidates for pesticide risk assessment in European rice fields: A review.

    PubMed

    Vallon, Martin; Dietzen, Christian; Laucht, Silke; Ludwigs, Jan-Dieter

    2018-04-25

    An assessment of potential risks of pesticides on wildlife is required during the process of product registration within Europe because of the importance of agricultural landscapes as wildlife habitats. Despite their peculiarity and their specific role as artificial wetlands, rice paddies are to date pooled with cereals in guidance documents on how to conduct risk assessments for birds and mammals in Europe. Hence, the focal species currently considered in risk assessments for rice paddies are those known from cereal fields and can therefore be expected to differ significantly from the species actually occurring in the wet environments of rice paddies. We present results of a comprehensive review on bird and mammal species regularly occurring in rice paddies during a time of potential pesticide exposure to identify appropriate focal species candidates for ecotoxicological pesticide risk assessment according to the European Food Safety Authority (EFSA). In addition, we present data on rice cultivation areas and agricultural practices in Europe to give background information supporting the species selection process. Our literature search identified a general scarcity of relevant data, particularly for mammals, which highlights the need for crop-specific focal species studies. However, our results clearly indicate that the relevant bird and mammal species in rice fields indeed differ strongly from the focal species used for the cereal risk assessment. They can thus be used as a baseline for more realistic wildlife risk assessments specific to rice and the development of a revised guidance document to bridge the gap for regulatory decision makers. Integr Environ Assess Manag 2018;00:000-000. © 2018 SETAC. © 2018 SETAC.

  7. The development of halophyte-based agriculture: past and present

    PubMed Central

    Ventura, Yvonne; Eshel, Amram; Pasternak, Dov; Sagi, Moshe

    2015-01-01

    Background Freshwater comprises about a mere 2·5 % of total global water, of which approximately two-thirds is locked into glaciers at the polar ice caps and on mountains. In conjunction with this, in many instances irrigation with freshwater causes an increase in soil salinity due to overirrigation of agricultural land, inefficient water use and poor drainage of unsuitable soils. The problem of salinity was recognized a long time ago and, due to the importance of irrigated agriculture, numerous efforts have been devoted towards improving crop species for better utilization of saline soils and water. Irrigating plants with saline water is a challenge for practitioners and researchers throughout the world. Scope Recruiting wild halophytes with economic potential was suggested several decades ago as a way to reduce the damage caused by salinization of soil and water. A range of cultivation systems for the utilization of halophytes have been developed, for the production of biofuel, purification of saline effluent in constructed wetlands, landscaping, cultivation of gourmet vegetables, and more. This review critically analyses past and present halophyte-based production systems in the context of genetics, physiology, agrotechnical issues and product value. There are still difficulties that need to be overcome, such as direct germination in saline conditions or genotype selection. However, more and more research is being directed not only towards determining salt tolerance of halophytes, but also to the improvement of agricultural traits for long-term progress. PMID:25122652

  8. Conservation biogeography of the Cerrado's wild edible plants under climate change: Linking biotic stability with agricultural expansion.

    PubMed

    de Oliveira, Guilherme; Lima-Ribeiro, Matheus Souza; Terribile, Levi Carina; Dobrovolski, Ricardo; Telles, Mariana Pires de Campos; Diniz-Filho, José Alexandre Felizola

    2015-06-01

    REMISE OF THE STUDY: Wild edible plants (WEPs) have an important cultural and economic role in human population worldwide. Human impacts are quickly converting natural habitats in agricultural, cattle ranch, and urbanized lands, putting native species on peril of risk of extinction, including some WEPs. Moreover, global climate changes also can pose another threat to species persistency. Here, we established conservation priorities for the Cerrado, a neotropical region in South America with high levels of plant endemism and vulnerability, aiming to assure long-term persistency of 16 most important WEPs. We evaluated these conservation priorities using a conservation biogeography framework using ecological patterns and process at a biogeographical scale to deal with species conservation features. We built ecological niche models for 16 WEPs from Cerrado in the neotropics using climate models for preindustrial, past (Last Glacial Maximum) and future (year 2080) time periods to establish climatically stable areas through time, finding refugias for these WEPs. We used a spatial prioritization algorithm based on the spatial pattern of irreplaceability across the neotropics, aiming to ensure the persistence of at least 25% of range size in climatically stable areas for each WEP, using agricultural models as constraints. The Southeast Cerrado was the most biotically stable and irreplaceable region for the WEPs compared with other areas across the neotropics. Our findings strongly suggest that the Southeast Cerrado should be considered a conservation priority, with new protected areas to be sustainably managed and restored, to guarantee the supply of cultural and ecosystem services provided from the Cerrado's WEPs. © 2015 Botanical Society of America, Inc.

  9. Coupled social and ecological outcomes of agricultural intensification in Costa Rica and the future of biodiversity conservation in tropical agricultural regions

    NASA Astrophysics Data System (ADS)

    Sanfiorenzo, A. R.; Waits, L.; Finegan, B.; Shaver, I.; Chain Guadarrama, A.; Cleary, K.; Santiago-Garcia, R.; Hormel, L.; Vierling, L. A.; Bosque-Perez, N.; DeClerck, F.; Fagan, M. E.; Sibelet, N.

    2016-12-01

    Tropical ecosystem conversion to agriculture has caused widespread habitat loss and created fragmented landscapes composed of remnant forest patches embedded in a matrix of agricultural land uses. Non-traditional agricultural export (NTAE) crops such as pineapple are rapidly replacing multiuse landscapes characterized by a diverse matrix of pasture and smallholder crops with intensive, large-scale, monoculture plantations. Using an interdisciplinary approach, we examine the coupled social and ecological implications of agricultural intensification Guided by frameworks from political economy, landscape ecology and landscape genetics we: (1) describe the social and economic implications of pineapple expansion, specifically the concentration of land, labor and financial resources, (2) quantify pineapple cultivation's spatial characteristics, and (3) assess the effects of pineapple expansion on surrounding forest ecosystems, on the agricultural matrix and on biodiversity conservation. Our results indicate that pineapple production concentrates land, labor, and financial resources, which has a homogenizing effect on the agricultural economy in the study region. This constrains farm-based livelihoods, with larger implications for food security and agricultural diversity. Landscape ecology and genetics analyses further reveal how pineapple production simplifies and homogenizes the agricultural matrix between forest patches, which increase the genetic structure and reduce the genetic diversity of Symphonia globulifera a forest understory tree species. To offset the effects of agricultural intensification on social and environmental systems, we recommend developing landscape level land use planning capacity. Furthermore, agricultural and conservation policy reform is needed to promote landscape heterogeneity and economic diversity within the agricultural sector. Our interdisciplinary research provides a detailed examination of the social and ecological impacts of

  10. Agriculture: About EPA's National Agriculture Center

    EPA Pesticide Factsheets

    EPA's National Agriculture Center (Ag Center), with the support of the United States Department of Agriculture, serves growers, livestock producers, other agribusinesses, and agricultural information/education providers.

  11. Flight performance of bumble bee as a possible pollinator in space agriculture under partial gravity

    NASA Astrophysics Data System (ADS)

    Yamashita, Masamichi; Hashimoto, Hirofumi; Mitsuhata, Masahiro; Sasaki, Masami; Space Agriculture Task Force, J.

    Space agriculture is an advanced life support concept for habitation on extraterrestrial bodies based on biological and ecological function. Flowering plant species are core member of space agriculture to produce food and revitalize air and water. Selection of crop plant species is made on the basis of nutritional requirements to maintain healthy life of space crew. Species selected for space agriculture have several mode of reproduction. For some of plant species, insect pollination is effective to increase yield and quality of food. In terrestrial agriculture, bee is widely introduced to pollinate flower. For pollinator insect on Mars, working environment is different from Earth. Magnitude of gravity is 0.38G on Mars surface. In order to confirm feasibility of insect pollination for space agriculture, capability of flying pollinator insect under such exotic condition should be examined. Even bee does not possess evident gravity sensory system, gravity dominates flying performance and behavior. During flight or hovering, lifting force produced by wing beat sustains body weight, which is the product of body mass and gravitational acceleration. Flying behavior of bumble bee, Bombus ignitus, was documented under partial or micro-gravity produced by parabolic flight of jet plane. Flying behavior at absence of gravity differed from that under normal gravity. Ability of bee to fly under partial gravity was examined at the level of Mars, Moon and the less, to determine the threshold level of gravity for bee flying maneuver. Adaptation process of bee flying under different gravity level was evaluated as well by successive documentation of parabolic flight experiment.

  12. Feeding ecology of chimpanzees (Pan troglodytes verus) inhabiting a forest-mangrove-savanna-agricultural matrix at Caiquene-Cadique, Cantanhez National Park, Guinea-Bissau.

    PubMed

    Bessa, Joana; Sousa, Cláudia; Hockings, Kimberley J

    2015-06-01

    With rising conversion of "natural" habitat to other land use such as agriculture, nonhuman primates are increasingly exploiting areas influenced by people and their activities. Despite the conservation importance of understanding the ways in which primates modify their behavior to human pressures, data are lacking, even for well-studied species. Using systematically collected data (fecal samples, feeding traces, and direct observations), we examined the diet and feeding strategies of an unhabituated chimpanzee community (Pan troglodytes verus) at Caiquene-Cadique in Guinea-Bissau that inhabit a forest-savanna-mangrove-agricultural mosaic. The chimpanzees experienced marked seasonal variations in the availability of plant foods, but maintained a high proportion of ripe fruit in the diet across months. Certain wild species were identified as important to this community including oil-palm (Elaeis guineensis) fruit and flower. Honey was frequently consumed but no other insects or vertebrates were confirmed to be eaten by this community. However, we provide indirect evidence of possible smashing and consumption of giant African snails (Achatina sp.) by chimpanzees at this site. Caiquene-Cadique chimpanzees were confirmed to feed on nine different agricultural crops, which represented 13.6% of all plant species consumed. Consumption of fruit and nonfruit crops was regular, but did not increase during periods of wild fruit scarcity. Crop consumption is an increasing and potentially problematic behavior, which can impact local people's tolerance toward wildlife. To maximize the potential success of any human-wildlife coexistence strategy (e.g., to reduce primate crop feeding), knowledge of primate behavior, as well as multifaceted social dimensions of interactions, is critical. © 2015 Wiley Periodicals, Inc.

  13. Use of SCW4 gene primers in PCR methods for the identification of six medically important Aspergillus species.

    PubMed

    Arancia, Silvia; Sandini, Silvia; De Carolis, Elena; Vella, Antonietta; Sanguinetti, Maurizio; Norelli, Sandro; De Bernardis, Flavia

    2016-10-01

    Aspergillus species are the cause of invasive mold infections in immunocompromised patients: Aspergillus fumigatus, A. flavus and A. terreus account for most cases of invasive aspergillosis (IA). As certain species are associated with higher mortality and vary in their resistance to antifungal therapy, diagnosis requires increasingly rapid molecular methods that enable sensitive detection and species discrimination. We have developed PCR and Multiplex PCR assays for the detection of six medically important Aspergillus spp. species DNA in bronchoalveolar lavage (BAL) specimens from hematology and intensive care unit (ICU) patients at risk of IA, using different species and genus-specific PCR primers, selected within the SCW4 gene, encoding a cell wall glucanase of A. fumigatus, similar to mannoprotein Mp65 of Candida albicans. The genus-specific PCR primers were able to amplify only Aspergillus DNAs but not that belonging to other fungal genera tested. The species-specific PCR primers allowed differentiation of each Aspergillus species by the amplicon length produced. The methods described in this study are rapid (less than 4 h), reproducible, simple and specific and demonstrate potential application in the clinical laboratory.

  14. 7 CFR 319.74-3 - Importations by the Department.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Cut Flowers § 319.74-3 Importations by the Department. The U.S. Department of Agriculture may import cut flowers for experimental or...

  15. 7 CFR 319.74-3 - Importations by the Department.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Cut Flowers § 319.74-3 Importations by the Department. The U.S. Department of Agriculture may import cut flowers for experimental or...

  16. 7 CFR 319.74-3 - Importations by the Department.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Cut Flowers § 319.74-3 Importations by the Department. The U.S. Department of Agriculture may import cut flowers for experimental or...

  17. 7 CFR 319.74-3 - Importations by the Department.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Cut Flowers § 319.74-3 Importations by the Department. The U.S. Department of Agriculture may import cut flowers for experimental or...

  18. Identifying Technical Content Training Needs of Georgia Agriculture Teachers

    ERIC Educational Resources Information Center

    Peake, Jason B.; Duncan, Dennis W.; Ricketts, John C.

    2007-01-01

    The continuing trend toward increasing diversity of curriculum offered within secondary agricultural education programs is driving a change in pre-service and in-service technical training for agriculture teachers. This study looks at agriculture teachers' perceived importance of, and competence in, traditional technical competencies such as…

  19. Biogenic Volatile Organic Compound (BVOC) emissions from agricultural crop species: is guttation a possible source for methanol emissions following light/dark transition ?

    NASA Astrophysics Data System (ADS)

    Mozaffar, Ahsan; Amelynck, Crist; Bachy, Aurélie; Digrado, Anthony; Delaplace, Pierre; du Jardin, Patrick; Fauconnier, Marie-Laure; Schoon, Niels; Aubinet, Marc; Heinesch, Bernard

    2015-04-01

    In the framework of the CROSTVOC (CROp STress VOC) project, the exchange of biogenic volatile organic compounds (BVOCs) between two important agricultural crop species, maize and winter wheat, and the atmosphere has recently been measured during an entire growing season by using the eddy covariance technique. Because of the co-variation of BVOC emission drivers in field conditions, laboratory studies were initiated in an environmental chamber in order to disentangle the responses of the emissions to variations of the individual environmental parameters (such as PPFD and temperature) and to diverse abiotic stress factors. Young plants were enclosed in transparent all-Teflon dynamic enclosures (cuvettes) through which BVOC-free and RH-controlled air was sent. BVOC enriched air was subsequently sampled from the plant cuvettes and an empty cuvette (background) and analyzed for BVOCs in a high sensitivity Proton Transfer Reaction Mass Spectrometer (hs-PTR-MS) and for CO2 in a LI-7000 non-dispersive IR gas analyzer. Emissions were monitored at constant temperature (25 °C) and at a stepwise varying PPFD pattern (0-650 µmol m-2 s-1). For maize plants, sudden light/dark transitions at the end of the photoperiod were accompanied by prompt and considerable increases in methanol (m/z 33) and water vapor (m/z 39) emissions. Moreover, guttation droplets appeared on the sides and the tips of the leaves within a few minutes after light/dark transition. Therefore the assumption has been raised that methanol is also coming out with guttation fluid from the leaves. Consequently, guttation fluid was collected from young maize and wheat plants, injected in an empty enclosure and sampled by PTR-MS. Methanol and a large number of other compounds were observed from guttation fluid. Recent studies have shown that guttation from agricultural crops frequently occurs in field conditions. Further research is required to find out the source strength of methanol emissions by this guttation

  20. Morphology of immature stages of blow fly, Lucilia sinensis Aubertin (Diptera: Calliphoridae), a potential species of forensic importance.

    PubMed

    Sanit, Sangob; Sukontason, Kom; Kurahashi, Hiromu; Tomberlin, Jeffery K; Wannasan, Anchalee; Kraisittipanit, Rungroj; Sukontason, Kabkaew L

    2017-12-01

    Lucilia sinensis Aubertin (Diptera: Calliphoridae) is a blow fly species of potential forensic importance since adults are attracted to, and colonize, decomposing vertebrate remains. Blow fly larvae associated with human corpses can be useful evidence in forensic investigations; however, their use is dependent in most cases on proper species identification and availability of developmental data. For identification, morphological information on each life stage is traditionally used. We used scanning electron microscopy (SEM) to examine the ultrastructure of eggs, all instars, and puparia, of L. sinensis. The important characteristics used to differentiate L. sinensis from other species are provided. Distinctive features of the eggs are the slight widening median area extending almost the entire length. The last abdominal segment of the first instar bears elongated outer ventral tubercles along the rim of the last abdominal segment. These tubercles, as well as the well developed median and outer dorsal tubercles, are more prominent in the second and third instars. The surface integument of the tubercles is equipped with circular rows of microtrichia. Pairs of inner dorsal tubercle are absent. Each anterior spiracle is comprised of 9-12 papillae arrange in a single row in the second and third instars. As for the third instar, the dorsal spines between the first and second thoracic segments are delicate, narrow, small, and close together (as row or set). The peristigmatic tufts adjacent to the posterior spiracle of the third instar are moderately branches of short, fine hairs, but minute in puparia. In conclusion, the prominent outer ventral tubercle in all instars and puparia is a new diagnostic feature of L. sinensis and helpful in differentiating it from other Lucilia species that are forensically important. The description of immature L. sinensis in this study will be useful for forensic entomologists in countries where this species exists. Copyright © 2017

  1. Insects associated with hospital environment in Egypt with special reference to the medically important species.

    PubMed

    Kenawy, Mohamed A; Amer, Hanan S; Lotfy, Nadia M; Khamis, Nagwa; Abdel-Hamid, Yousrya M

    2014-12-01

    A study was planned to examine the insect fauna associated with two hospitals: urban (A) in Cairo and rural (B) in Banha, Egypt with varying hygienic levels and their adjacent residential areas (AC) and (BC), respectively and to investigate the effect of hygienic level on species composition and relative abundance. A total of 22 species belonging to 7 orders and 15 families were reported in the four study areas of which, Dipterous flies were the most common (8/22, 36.36% species). A total of 5257 adults were collected of which Dipterous flies were the abundant (3800, 72.28% insect) and Musca domestica was the most abundant species (3535, 67.24% insect) which was present in all areas where it was more common / predominant species (21.94%-90.91% insect). Moreover, higher densities of M domestica were in (B) and BC than in (A) or (AC). The heavily infested area was AC (54.55% species) followed by (A), (BC) and (B) however, the total number of the collected insects was higher in (BC) and (B) than in (AC) and (A). This was confirmed by finding maximum diversity indices in (AC) and minimum ones in B. In all areas, means of M domestica was more common during summer/autumn and spring than in the winter. Periplaneta americana collected oily during autumn in AC and was more common in autumn in (BC) while Blatella germanica collected only during summer in (AC) and was more common in autumn in (B). The prevalence and higher abundance of the medically important species mainly M domestica, P. americana and B. germanica in rural hospital than in urban one attribute mainly to the lower hygienic level of rural hospital This require a control program based mainly on sanitation supplemented by other measures to overcome the risk of disease transmission by such insects

  2. Assessment of oil content and fatty acid composition variability in two economically important Hibiscus species.

    PubMed

    Wang, Ming Li; Morris, Brad; Tonnis, Brandon; Davis, Jerry; Pederson, Gary A

    2012-07-04

    The Hibiscus genus encompasses more than 300 species, but kenaf (Hibiscus cannabinus L.) and roselle (Hibiscus sabdariffa L.) are the two most economically important species within the genus. Seeds from these two Hibiscus species contain a relatively high amount of oil with two unusual fatty acids: dihydrosterculic and vernolic acids. The fatty acid composition in the oil can directly affect oil quality and its utilization. However, the variability in oil content and fatty acid composition for these two species is unclear. For these two species, 329 available accessions were acquired from the USDA germplasm collection. Their oil content and fatty acid composition were determined by nuclear magnetic resonance (NMR) and gas chromatography (GC), respectively. Using NMR and GC analyses, we found that Hibiscus seeds on average contained 18% oil and seed oil was composed of six major fatty acids (each >1%) and seven minor fatty acids (each <1%). Hibiscus cannabinus seeds contained significantly higher amounts of oil (18.14%), palmitic (20.75%), oleic (28.91%), vernolic acids (VA, 4.16%), and significantly lower amounts of stearic (3.96%), linoleic (39.49%), and dihydrosterculic acids (DHSA, 1.08%) than H. sabdariffa seeds (17.35%, 18.52%, 25.16%, 3.52%, 4.31%, 44.72%, and 1.57%, respectively). For edible oils, a higher oleic/linoleic (O/L) ratio and lower level of DHSA are preferred, and for industrial oils a high level of VA is preferred. Our results indicate that seeds from H. cannabinus may be of higher quality than H. sabdariffa seeds for these reasons. Significant variability in oil content and major fatty acids was also detected within both species. The variability in oil content and fatty acid composition revealed from this study will be useful for exploring seed utilization and developing new cultivars in these Hibiscus species.

  3. Visibility from roads predict the distribution of invasive fishes in agricultural ponds.

    PubMed

    Kizuka, Toshikazu; Akasaka, Munemitsu; Kadoya, Taku; Takamura, Noriko

    2014-01-01

    Propagule pressure and habitat characteristics are important factors used to predict the distribution of invasive alien species. For species exhibiting strong propagule pressure because of human-mediated introduction of species, indicators of introduction potential must represent the behavioral characteristics of humans. This study examined 64 agricultural ponds to assess the visibility of ponds from surrounding roads and its value as a surrogate of propagule pressure to explain the presence and absence of two invasive fish species. A three-dimensional viewshed analysis using a geographic information system quantified the visual exposure of respective ponds to humans. Binary classification trees were developed as a function of their visibility from roads, as well as five environmental factors: river density, connectivity with upstream dam reservoirs, pond area, chlorophyll a concentration, and pond drainage. Traditional indicators of human-mediated introduction (road density and proportion of urban land-use area) were alternatively included for comparison instead of visual exposure. The presence of Bluegill (Lepomis macrochirus) was predicted by the ponds' higher visibility from roads and pond connection with upstream dam reservoirs. Results suggest that fish stocking into ponds and their dispersal from upstream sources facilitated species establishment. Largemouth bass (Micropterus salmoides) distribution was constrained by chlorophyll a concentration, suggesting their lower adaptability to various environments than that of Bluegill. Based on misclassifications from classification trees for Bluegill, pond visual exposure to roads showed greater predictive capability than traditional indicators of human-mediated introduction. Pond visibility is an effective predictor of invasive species distribution. Its wider use might improve management and mitigate further invasion. The visual exposure of recipient ecosystems to humans is important for many invasive species that

  4. Crop insurance: a tool to stabilize Spanish agricultural income

    NASA Astrophysics Data System (ADS)

    Calatayud Piñero, E.; Escribano Pintor, S.

    2009-04-01

    Agricultural insurance was born as a need for farmers, opposite to the erratic behavior of the climatology, natural disaster, which strangles the farmer during the cycle of his crops and harvest, reverberating negatively in the economy of the farmer. Before this situation, it became necessary to determine, inside the agricultural policies, a specific regulation of the agricultural insurance across a participation of the State by means of contributions to the agricultural insurance which result was, in Spain, the current Law 87/1978, of December 28 of Agricultural Insurance. The benefits of the existence of a good system of agricultural insurance not only are to level of the farmer but also to regional level and top areas, since to the regional production turns diminished, it reverberates in the economic productivity and in the rest of economic sectors, with the consequent tensions and imbalances, and the probability of being translated in a decrease of the quality of life of the rural way. But the analysis of the importance of his situation, not only must be carried out from a theoretical perspective, where already there exist numerous studies that treat the relation and importance of the agricultural insurance with regard to the traditional agriculture characterized by his limited capacity of innovation. For it, in this paper, we will proceed to realize an empirical analysis, inside our country, across the principal agrarian information statistics, as faithful reflection of the economic dimension of the sector, for across his evolution as well as that of the indemnifications paid for the agricultural insurance, to be able to show the importance of the same one in his contribution to the maintenance and improvement of the agriculture, avoiding the uncertainty of the farmer By means of the utilization of mobile averages, which eliminate the erratic behavior in the annual series, first we will realize a national analysis for the set of the lines of agricultural

  5. Market-based Instruments for optimal control of Invasive Insect Species: B. tabaci in Arizona.

    USDA-ARS?s Scientific Manuscript database

    Invasive insect species represent a significant economic risk to both the financial viability of agricultural producers and to the sustainability of U.S. agriculture more generally. With the rapid growth of international trade in agricultural commodities of all types, agricultural systems in the U.S...

  6. Using euhalophytes to understand salt tolerance and to develop saline agriculture: Suaeda salsa as a promising model

    PubMed Central

    Song, Jie; Wang, Baoshan

    2015-01-01

    Background As important components in saline agriculture, halophytes can help to provide food for a growing world population. In addition to being potential crops in their own right, halophytes are also potential sources of salt-resistance genes that might help plant breeders and molecular biologists increase the salt tolerance of conventional crop plants. One especially promising halophyte is Suaeda salsa, a euhalophytic herb that occurs both on inland saline soils and in the intertidal zone. The species produces dimorphic seeds: black seeds are sensitive to salinity and remain dormant in light under high salt concentrations, while brown seeds can germinate under high salinity (e.g. 600 mm NaCl) regardless of light. Consequently, the species is useful for studying the mechanisms by which dimorphic seeds are adapted to saline environments. S. salsa has succulent leaves and is highly salt tolerant (e.g. its optimal NaCl concentration for growth is 200 mm). A series of S. salsa genes related to salt tolerance have been cloned and their functions tested: these include SsNHX1, SsHKT1, SsAPX, SsCAT1, SsP5CS and SsBADH. The species is economically important because its fresh branches have high value as a vegetable, and its seed oil is edible and rich in unsaturated fatty acids. Because it can remove salts and heavy metals from saline soils, S. salsa can also be used in the restoration of salinized or contaminated saline land. Scope Because of its economic and ecological value in saline agriculture, S. salsa is one of the most important halophytes in China. In this review, the value of S. salsa as a source of food, medicine and forage is discussed. Its uses in the restoration of salinized or contaminated land and as a source of salt-resistance genes are also considered. PMID:25288631

  7. Evaluation of Nuttall oak and cherrybark oak survival by planting stock and site preparation treatment type in a WRP planting on a retired agricultural site

    Treesearch

    Andrew B. Self; Andrew W. Ezell; Andrew J. Londo; John D. Hodges

    2010-01-01

    Oaks are an ecologically and economically important component of the southern landscape, and many landowners are opting to regenerate their lands with these species. Federal cost share programs, such as the Wetland Reserve Program (WRP), have increased public interest in afforestation of retired agricultural sites in the Lower Mississippi Alluvial Valley (LMAV). Acorns...

  8. Characterizing the community of Phytophthora species in an Oregon forest stream

    Treesearch

    Philippe Remigi; Wendy Sutton; Paul Reeser; Everett Hansen

    2009-01-01

    Phytophthora species are best known as pathogens of agricultural crops, or invasive pathogens destroying forests. Little is known about indigenous species, especially in wild ecosystems. Previous work showed that Phytophthora species are relatively abundant in natural streams in forests, but the species present are poorly...

  9. Sustainable intensification in agricultural systems.

    PubMed

    Pretty, Jules; Bharucha, Zareen Pervez

    2014-12-01

    Agricultural systems are amended ecosystems with a variety of properties. Modern agroecosystems have tended towards high through-flow systems, with energy supplied by fossil fuels directed out of the system (either deliberately for harvests or accidentally through side effects). In the coming decades, resource constraints over water, soil, biodiversity and land will affect agricultural systems. Sustainable agroecosystems are those tending to have a positive impact on natural, social and human capital, while unsustainable systems feed back to deplete these assets, leaving fewer for the future. Sustainable intensification (SI) is defined as a process or system where agricultural yields are increased without adverse environmental impact and without the conversion of additional non-agricultural land. The concept does not articulate or privilege any particular vision or method of agricultural production. Rather, it emphasizes ends rather than means, and does not pre-determine technologies, species mix or particular design components. The combination of the terms 'sustainable' and 'intensification' is an attempt to indicate that desirable outcomes around both more food and improved environmental goods and services could be achieved by a variety of means. Nonetheless, it remains controversial to some. This review analyses recent evidence of the impacts of SI in both developing and industrialized countries, and demonstrates that both yield and natural capital dividends can occur. The review begins with analysis of the emergence of combined agricultural-environmental systems, the environmental and social outcomes of recent agricultural revolutions, and analyses the challenges for food production this century as populations grow and consumption patterns change. Emergent criticisms are highlighted, and the positive impacts of SI on food outputs and renewable capital assets detailed. It concludes with observations on policies and incentives necessary for the wider adoption of

  10. Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding.

    PubMed

    Aizpurua, Ostaizka; Budinski, Ivana; Georgiakakis, Panagiotis; Gopalakrishnan, Shyam; Ibañez, Carlos; Mata, Vanessa; Rebelo, Hugo; Russo, Danilo; Szodoray-Parádi, Farkas; Zhelyazkova, Violeta; Zrncic, Vida; Gilbert, M Thomas P; Alberdi, Antton

    2018-02-01

    The interaction between agricultural production and wildlife can shape, and even condition, the functioning of both systems. In this study, we i) explored the degree to which a widespread European bat, namely the common bent-wing bat Miniopterus schreibersii, consumes crop-damaging insects at a continental scale, and ii) tested whether its dietary niche is shaped by the extension and type of agricultural fields. We employed a dual-primer DNA metabarcoding approach to characterize arthropod 16S and COI DNA sequences within bat faecal pellets collected across 16 Southern European localities, to first characterize the bat species' dietary niche, second measure the incidence of agricultural pests across their ranges and third assess whether geographical dietary variation responds to climatic, landscape diversity, agriculture type and vegetation productivity factors. We detected 12 arthropod orders, among which lepidopterans were predominant. We identified >200 species, 44 of which are known to cause agricultural damage. Pest species were detected at all but one sampling site and in 94% of the analysed samples. Furthermore, the dietary diversity of M. schreibersii exhibited a negative linear relation with the area of intensive agricultural fields, thus suggesting crops restrict the dietary niche of bats to prey taxa associated with agricultural production within their foraging range. Overall, our results imply that M. schreibersii might be a valuable asset for biological pest suppression in a variety of agricultural productions and highlight the dynamic interplay between wildlife and agricultural systems. © 2017 John Wiley & Sons Ltd.

  11. Agricultural SWOT analysis and wisdom agriculture design of chengdu

    NASA Astrophysics Data System (ADS)

    Zhang, Qian; Chen, Xiangyu; Du, Shaoming; Yin, Guowei; Yu, Feng; Liu, Guicai; Gong, Jin; Han, Fujun

    2017-08-01

    According to the status of agricultural information, this paper analyzed the advantages, opportunities and challenges of developing wisdom agriculture in Chengdu. By analyzed the local characteristics of Chengdu agriculture, the construction program of Chengdu wisdom agriculture was designed, which was based on the existing agricultural informatization. The positioning and development theme of Chengdu agriculture is leisure agriculture, urban agriculture and quality agriculture.

  12. Degradation changes in plant root cell wall structural molecules during extended decomposition of important agricultural crop and forage species

    USDA-ARS?s Scientific Manuscript database

    Little is known about the changes in the cell wall structural molecules lignin, cellulose and hemicellulose as plant roots decompose, despite their importance in the formation of soil organic matter. The objectives of this study were to quantify changes in root composition during 270 d incubations o...

  13. Species-area curves indicate the importance of habitats' contributions to regional biodiversity

    USGS Publications Warehouse

    Chong, G.W.; Stohlgren, T.J.

    2007-01-01

    We examined species-area curves, species composition and similarity (Jaccard's coefficients), and species richness in 17 vegetation types to develop a composite index of a vegetation type's contribution to regional species richness. We collected data from 1 to 1000 m2 scales in 147 nested plots in Rocky Mountain National Park, Colorado, USA to compare three species-area curve models' abilities to estimate the number of species observed in each vegetation type. The log(species)-log(area) curve had the largest adjusted coefficients of determination (r2 values) in 12 of the 17 types, followed by the species-log(area) curve with five of the highest values. When the slopes of the curves were corrected for species overlap among plots with Jaccard's coefficients, the species-log(area) curves estimated values closest to those observed. We combined information from species-area curves and measures of heterogeneity with information on the area covered by each vegetation type and found that the types making the greatest contributions to regional biodiversity covered the smallest areas. This approach may provide an accurate and relatively rapid way to rank hotspots of plant diversity within regions of interest.

  14. Multiple Assembly Rules Drive the Co-occurrence of Orthopteran and Plant Species in Grasslands: Combining Network, Functional and Phylogenetic Approaches

    PubMed Central

    Fournier, Bertrand; Mouly, Arnaud; Gillet, François

    2016-01-01

    Understanding the factors underlying the co-occurrence of multiple species remains a challenge in ecology. Biotic interactions, environmental filtering and neutral processes are among the main mechanisms evoked to explain species co-occurrence. However, they are most often studied separately or even considered as mutually exclusive. This likely hampers a more global understanding of species assembly. Here, we investigate the general hypothesis that the structure of co-occurrence networks results from multiple assembly rules and its potential implications for grassland ecosystems. We surveyed orthopteran and plant communities in 48 permanent grasslands of the French Jura Mountains and gathered functional and phylogenetic data for all species. We constructed a network of plant and orthopteran species co-occurrences and verified whether its structure was modular or nested. We investigated the role of all species in the structure of the network (modularity and nestedness). We also investigated the assembly rules driving the structure of the plant-orthopteran co-occurrence network by using null models on species functional traits, phylogenetic relatedness and environmental conditions. We finally compared our results to abundance-based approaches. We found that the plant-orthopteran co-occurrence network had a modular organization. Community assembly rules differed among modules for plants while interactions with plants best explained the distribution of orthopterans into modules. Few species had a disproportionately high positive contribution to this modular organization and are likely to have a key importance to modulate future changes. The impact of agricultural practices was restricted to some modules (3 out of 5) suggesting that shifts in agricultural practices might not impact the entire plant-orthopteran co-occurrence network. These findings support our hypothesis that multiple assembly rules drive the modular structure of the plant-orthopteran network. This

  15. Agriculture and malnutrition in India.

    PubMed

    Gulati, Ashok; Ganesh-Kumar, A; Shreedhar, Ganga; Nandakumar, T

    2012-03-01

    Despite the high and relatively stable overall growth of the economy, India's agriculture sector is underperforming and a vast section of the population remains undernourished. To explore the possible interplay between agricultural performance and malnutrition indicators to see whether states that perform better in agriculture record better nutritional outcomes. Correlation analysis and a simple linear regression model were used to study the relationship between agricultural performance and malnutrition among children under 5 years of age and adults from 15 to 49 years of age at 20 major states using data from the National Family Health Survey-3 for the year 2005/06 and the national accounts. Indicators of the level of agricultural performance or income have a strong and significant negative relationship with indices of undernutrition among adults and children, a result suggesting that improvement of agricultural productivity can be a powerful tool to reduce undernutrition across the vast majority of the population. In addition to agriculture, access to sanitation facilities and women's literacy were also found to be strong factors affecting malnutrition. Access to healthcare for women and child-care practices, in particular breastfeeding within 1 hour after birth, are other important determinants of malnutrition among adults and children. Malnutrition is a multidimensional problem that requires multisectoral interventions. The findings show that improving agricultural performance can have a positive impact on nutritional outcomes. However, improvements in agriculture alone cannot be effective in combating malnutrition if several other mediating factors are not in place. Interventions to improve education, health, sanitation and household infrastructure, and care and feeding practices are critical. Innovative strategies that integrate agriculture and nutrition programs stand a better chance of combating the malnutrition problem.

  16. 7 CFR 999.400 - Regulation governing the importation of filberts.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Regulation governing the importation of filberts. 999.400 Section 999.400 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE...

  17. 7 CFR 999.1 - Regulation governing the importation of dates.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Regulation governing the importation of dates. 999.1 Section 999.1 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (MARKETING AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE SPECIALTY...

  18. Post-harvest entomology research in the United States Department of Agriculture-Agricultural Research Service.

    PubMed

    Throne, James E; Hallman, Guy J; Johnson, Judy A; Follett, Peter A

    2003-01-01

    This is a review of current post-harvest entomology research conducted by the Agricultural Research Service, the research branch of the US Department of Agriculture. The review covers both durable and perishable commodities. Research on biochemistry, genetics, physiology, monitoring and control of insects infesting stored grain, dried fruits and nuts, and processed commodities is reviewed. Research on development of quarantine treatments, particularly for fruit flies, is also reviewed, including research on thermal and irradiation treatments and a discussion of risk management for quarantine pests. Two areas of research are covered more extensively: a project to map the genome of the red flour beetle, Tribolium castaneum, and the use of near-infrared spectroscopy for detection of hidden infestations in grain, quantification of insect fragments in food, determination of quality in dried fruits, identification of insect species and age-grading insects. Future research directions are identified.

  19. Response of benthic algae to environmental gradients in an agriculturally dominated landscape

    USGS Publications Warehouse

    Munn, M.D.; Black, R.W.; Gruber, S.J.

    2002-01-01

    Benthic algal communities were assessed in an agriculturally dominated landscape in the Central Columbia Plateau, Washington, to determine which environmental variables best explained species distributions, and whether algae species optima models were useful in predicting specific water-quality parameters. Land uses in the study area included forest, range, urban, and agriculture. Most of the streams in this region can be characterized as open-channel systems influenced by intensive dryland (nonirrigated) and irrigated agriculture. Algal communities in forested streams were dominated by blue-green algae, with communities in urban and range streams dominated by diatoms. The predominance of either blue-greens or diatoms in agricultural streams varied greatly depending on the specific site. Canonical correspondence analysis (CCA) indicated a strong gradient effect of several key environmental variables on benthic algal community composition. Conductivity and % agriculture were the dominant explanatory variables when all sites (n = 24) were included in the CCA; water velocity replaced conductivity when the CCA included only agricultural and urban sites. Other significant explanatory variables included dissolved inorganic nitrogen (DIN), orthophosphate (OP), discharge, and precipitation. Regression and calibration models accurately predicted conductivity based on benthic algal communities, with OP having slightly lower predictability. The model for DIN was poor, and therefore may be less useful in this system. Thirty-four algal taxa were identified as potential indicators of conductivity and nutrient conditions, with most indicators being diatoms except for the blue-greens Anabaenasp. and Lyngbya sp.

  20. Agricultural Chemicals and Radiation. Ag Ed Environmental Education Series.

    ERIC Educational Resources Information Center

    Tulloch, Rodney W.

    The document is designed to be used as a resource in teaching vocational agriculture high school students about the environment. Agricultural chemicals are the major focus, with some attention to radiation. The importance of safety in agricultural chemical use is stressed, with descriptions of the pesticide label; protective clothing; respiratory…

  1. The importance of assessing climate change vulnerability to address species conservation

    Treesearch

    Karen E. Bagne; Megan M. Friggens; Sharon J. Coe; Deborah M. Finch

    2014-01-01

    Species conservation often prioritizes attention on a small subset of "special status" species at high risk of extinction, but actions based on current lists of special status species may not effectively moderate biodiversity loss if climate change alters threats. Assessments of climate change vulnerability may provide a method to enhance identification of...

  2. Pollinator Interactions with Yellow Starthistle (Centaurea solstitialis) across Urban, Agricultural, and Natural Landscapes

    PubMed Central

    Leong, Misha; Kremen, Claire; Roderick, George K.

    2014-01-01

    Pollinator-plant relationships are found to be particularly vulnerable to land use change. Yet despite extensive research in agricultural and natural systems, less attention has focused on these interactions in neighboring urban areas and its impact on pollination services. We investigated pollinator-plant interactions in a peri-urban landscape on the outskirts of the San Francisco Bay Area, California, where urban, agricultural, and natural land use types interface. We made standardized observations of floral visitation and measured seed set of yellow starthistle (Centaurea solstitialis), a common grassland invasive, to test the hypotheses that increasing urbanization decreases 1) rates of bee visitation, 2) viable seed set, and 3) the efficiency of pollination (relationship between bee visitation and seed set). We unexpectedly found that bee visitation was highest in urban and agricultural land use contexts, but in contrast, seed set rates in these human-altered landscapes were lower than in natural sites. An explanation for the discrepancy between floral visitation and seed set is that higher plant diversity in urban and agricultural areas, as a result of more introduced species, decreases pollinator efficiency. If these patterns are consistent across other plant species, the novel plant communities created in these managed landscapes and the generalist bee species that are favored by human-altered environments will reduce pollination services. PMID:24466050

  3. An important tool with no instruction manual: A review of gypsum use in agriculture

    USDA-ARS?s Scientific Manuscript database

    Land application of gypsum has been studied and utilized in agriculture and environmental remediation for many years. Most of the published literature has focused on gypsum application impacts on soil properties rather than crop yields. This literature review was conducted to (i) gather results from...

  4. [Ecological agriculture: future of agriculture for Chinese material medica].

    PubMed

    Guo, Lan-Ping; Wang, Tie-Lin; Yang, Wan-Zhen; Zhou, Liang-Yun; Chen, Nai-Fu; Han, Bang-Xing; Huang, Lu-Qi

    2017-01-01

    The ecological agriculture of traditional Chinese medicine (TCM) is generally acknowledged as the most advanced agricultural mode. However, it's still a doubt whether ecological agriculture could be widely applied in TCM agriculture. In this study, we first analyze both the differences and relationships between ecological and organic agriculture, which suggesting that ecological agriculture does not need all the inputs as traditional agriculture. After introducing the situation of ecological agriculture from all across the world, we analyze the differences and characteristics between ecological and chemical agricultures. Considered with the big challenge caused by chemical agriculture, we pointed out that ecological agriculture could definitely replace chemical agriculture. Last but not the least, combined with the situation and problems of Chinese agriculture, we analyze the distinctive advantages of TCM ecological agriculture from 3 aspects as its unique quality characteristics, its unique habitat requirements in production and its unique application and market characteristics, respectively. In conclusion, ecological agriculture is the straight way of TCM agriculture. Copyright© by the Chinese Pharmaceutical Association.

  5. Characterising Wetland Properties in Relation to the Abundance of an Invasive Species

    NASA Astrophysics Data System (ADS)

    Yanosik, L. E.; McEnroe, N. A.

    2008-12-01

    Purple loosestrife (Lythrum salicaria) is a colorful but aggressive invasive species found at the Goodyear Swamp Sanctuary in Upstate New York. Flowering from June to September allows a large number of seeds to spread quickly throughout the growing season. This invasive species can alter can alter a wetland's functional properties by impacting the hydrology and soil properties. These modified properties are of concern to wetland scientists and wetland managers as the characterisation of wetland condition becomes more important. Control or eradication of purple loosestrife within the Goodyear Swamp has become regionally important and is carried out by a U.S. Department of Agriculture approved leaf-eating beetle Galerucella calmariensis. A study to investigate the environmental conditions in which purple loosestrife has propagated and changed the native flora of Goodyear Swamp was developed. The aim was to characterize the soil physiochemical properties and hydrological conditions under which the species occurs. These data are relevant to be able to highlight the wetland conditions under which purple loosestrife might invade and to be able to compare treated and untreated wetlands. We highlight key differences in wetland functional properties caused by the invasion of this species.

  6. Plant growth promotion in cereal and leguminous agricultural important plants: from microorganism capacities to crop production.

    PubMed

    Pérez-Montaño, F; Alías-Villegas, C; Bellogín, R A; del Cerro, P; Espuny, M R; Jiménez-Guerrero, I; López-Baena, F J; Ollero, F J; Cubo, T

    2014-01-01

    Plant growth-promoting rhizobacteria (PGPR) are free-living bacteria which actively colonize plant roots, exerting beneficial effects on plant development. The PGPR may (i) promote the plant growth either by using their own metabolism (solubilizing phosphates, producing hormones or fixing nitrogen) or directly affecting the plant metabolism (increasing the uptake of water and minerals), enhancing root development, increasing the enzymatic activity of the plant or "helping" other beneficial microorganisms to enhance their action on the plants; (ii) or may promote the plant growth by suppressing plant pathogens. These abilities are of great agriculture importance in terms of improving soil fertility and crop yield, thus reducing the negative impact of chemical fertilizers on the environment. The progress in the last decade in using PGPR in a variety of plants (maize, rice, wheat, soybean and bean) along with their mechanism of action are summarized and discussed here. Copyright © 2013 Elsevier GmbH. All rights reserved.

  7. Fire frequency, agricultural history and the multivariate control of pine savanna understorey plant diversity

    Treesearch

    Joseph W. Veldman; Lars A. Brudvig; Ellen I. Damschen; John L. Orrock; W. Brett Mattingly; Joan L. Walker

    2014-01-01

    Question: Human-altered disturbance regimes and agricultural land uses are broadly associated with reduced plant species diversity in terrestrial ecosystems. In this study, we seek to understand how fire frequency and agricultural land-use history influence savanna understorey plant diversity through complex relationships (i.e. indirect effects) among multiple...

  8. Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects.

    PubMed

    Vallée, Geneviève C; Muñoz, Daniella Santos; Sankoff, David

    2016-11-11

    Of the approximately two hundred sequenced plant genomes, how many and which ones were sequenced motivated by strictly or largely scientific considerations, and how many by chiefly economic, in a wide sense, incentives? And how large a role does publication opportunity play? In an integration of multiple disparate databases and other sources of information, we collect and analyze data on the size (number of species) in the plant orders and families containing sequenced genomes, on the trade value of these species, and of all the same-family or same-order species, and on the publication priority within the family and order. These data are subjected to multiple regression and other statistical analyses. We find that despite the initial importance of model organisms, it is clearly economic considerations that outweigh others in the choice of genome to be sequenced. This has important implications for generalizations about plant genomes, since human choices of plants to harvest (and cultivate) will have incurred many biases with respect to phenotypic characteristics and hence of genomic properties, and recent genomic evolution will also have been affected by human agricultural practices.

  9. 7 CFR 1230.12 - Importer.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PORK PROMOTION, RESEARCH, AND CONSUMER INFORMATION Pork Promotion, Research, and Consumer Information Order Definitions § 1230.12 Importer. Importer means a person who imports porcine animals, pork, or pork products into the United...

  10. 7 CFR 1230.12 - Importer.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PORK PROMOTION, RESEARCH, AND CONSUMER INFORMATION Pork Promotion, Research, and Consumer Information Order Definitions § 1230.12 Importer. Importer means a person who imports porcine animals, pork, or pork products into the United...

  11. 7 CFR 1230.12 - Importer.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PORK PROMOTION, RESEARCH, AND CONSUMER INFORMATION Pork Promotion, Research, and Consumer Information Order Definitions § 1230.12 Importer. Importer means a person who imports porcine animals, pork, or pork products into the United...

  12. 7 CFR 1230.12 - Importer.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PORK PROMOTION, RESEARCH, AND CONSUMER INFORMATION Pork Promotion, Research, and Consumer Information Order Definitions § 1230.12 Importer. Importer means a person who imports porcine animals, pork, or pork products into the United...

  13. 7 CFR 1209.8 - Importer.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE MUSHROOM PROMOTION, RESEARCH, AND CONSUMER INFORMATION ORDER Mushroom Promotion, Research, and Consumer Information Order Definitions § 1209.8 Importer. Importer means any person who imports, on average, over 500,000 pounds of mushrooms...

  14. 7 CFR 1209.8 - Importer.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE MUSHROOM PROMOTION, RESEARCH, AND CONSUMER INFORMATION ORDER Mushroom Promotion, Research, and Consumer Information Order Definitions § 1209.8 Importer. Importer means any person who imports, on average, over 500,000 pounds of mushrooms...

  15. 7 CFR 1209.8 - Importer.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE MUSHROOM PROMOTION, RESEARCH, AND CONSUMER INFORMATION ORDER Mushroom Promotion, Research, and Consumer Information Order Definitions § 1209.8 Importer. Importer means any person who imports, on average, over 500,000 pounds of mushrooms...

  16. 7 CFR 1209.8 - Importer.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE MUSHROOM PROMOTION, RESEARCH, AND CONSUMER INFORMATION ORDER Mushroom Promotion, Research, and Consumer Information Order Definitions § 1209.8 Importer. Importer means any person who imports, on average, over 500,000 pounds of mushrooms...

  17. 7 CFR 1209.8 - Importer.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE MUSHROOM PROMOTION, RESEARCH, AND CONSUMER INFORMATION ORDER Mushroom Promotion, Research, and Consumer Information Order Definitions § 1209.8 Importer. Importer means any person who imports, on average, over 500,000 pounds of mushrooms...

  18. Importance of scale, land cover, and weather on the abundance of bird species in a managed forest

    USGS Publications Warehouse

    Grinde, Alexis R.; Hiemi, Gerald J.; Sturtevant, Brian R.; Panci, Hannah; Thogmartin, Wayne E.; Wolter, Peter

    2017-01-01

    Climate change and habitat loss are projected to be the two greatest drivers of biodiversity loss over the coming century. While public lands have the potential to increase regional resilience of bird populations to these threats, long-term data are necessary to document species responses to changes in climate and habitat to better understand population vulnerabilities. We used generalized linear mixed models to determine the importance of stand-level characteristics, multi-scale land cover, and annual weather factors to the abundance of 61 bird species over a 20-year time frame in Chippewa National Forest, Minnesota, USA. Of the 61 species modeled, we were able to build final models with R-squared values that ranged from 26% to 69% for 37 species; the remaining 24 species models had issues with convergence or low explanatory power (R-squared < 20%). Models for the 37 species show that stand-level characteristics, land cover factors, and annual weather effects on species abundance were species-specific and varied within guilds. Forty-one percent of the final species models included stand-level characteristics, 92% included land cover variables at the 200 m scale, 51% included land cover variables at the 500 m scale, 46% included land cover variables at the 1000 m scale, and 38% included weather variables in best models. Three species models (8%) included significant weather and land cover interaction terms. Overall, models indicated that aboveground tree biomass and land cover variables drove changes in the majority of species. Of those species models including weather variables, more included annual variation in precipitation or drought than temperature. Annual weather variability was significantly more likely to impact abundance of species associated with deciduous forests and bird species that are considered climate sensitive. The long-term data and models we developed are particularly suited to informing science-based adaptive forest management plans that

  19. Intra- and inter-species interactions within biofilms of important foodborne bacterial pathogens

    PubMed Central

    Giaouris, Efstathios; Heir, Even; Desvaux, Mickaël; Hébraud, Michel; Møretrø, Trond; Langsrud, Solveig; Doulgeraki, Agapi; Nychas, George-John; Kačániová, Miroslava; Czaczyk, Katarzyna; Ölmez, Hülya; Simões, Manuel

    2015-01-01

    A community-based sessile life style is the normal mode of growth and survival for many bacterial species. Under such conditions, cell-to-cell interactions are inevitable and ultimately lead to the establishment of dense, complex and highly structured biofilm populations encapsulated in a self-produced extracellular matrix and capable of coordinated and collective behavior. Remarkably, in food processing environments, a variety of different bacteria may attach to surfaces, survive, grow, and form biofilms. Salmonella enterica, Listeria monocytogenes, Escherichia coli, and Staphylococcus aureus are important bacterial pathogens commonly implicated in outbreaks of foodborne diseases, while all are known to be able to create biofilms on both abiotic and biotic surfaces. Particularly challenging is the attempt to understand the complexity of inter-bacterial interactions that can be encountered in such unwanted consortia, such as competitive and cooperative ones, together with their impact on the final outcome of these communities (e.g., maturation, physiology, antimicrobial resistance, virulence, dispersal). In this review, up-to-date data on both the intra- and inter-species interactions encountered in biofilms of these pathogens are presented. A better understanding of these interactions, both at molecular and biophysical levels, could lead to novel intervention strategies for controlling pathogenic biofilm formation in food processing environments and thus improve food safety. PMID:26347727

  20. Agriculture sows pests: how crop domestication, host shifts, and agricultural intensification can create insect pests from herbivores.

    PubMed

    Bernal, Julio S; Medina, Raul F

    2018-04-01

    We argue that agriculture as practiced creates pests. We use three examples (Corn leafhopper, Dalbulus maidis; Western corn rootworm, Diabrotica virgifera virgifera; Cotton fleahopper, Pseudatomoscelis seriatus) to illustrate: firstly, how since its origins, agriculture has proven conducive to transforming selected herbivores into pests, particularly through crop domestication and spread, and agricultural intensification, and; secondly, that the herbivores that became pests were among those hosted by crop wild relatives or associates, and were pre-adapted either as whole species or component subpopulations. Two of our examples, Corn leafhopper and Western corn rootworm, illustrate how following a host shift to a domesticated host, emergent pests 'hopped' onto crops and rode expansion waves to spread far beyond the geographic ranges of their wild hosts. Western corn rootworm exemplifies how an herbivore-tolerant crop was left vulnerable when it was bred for yield and protected with insecticides. Cotton fleahopper illustrates how removing preferred wild host plants from landscapes and replacing them with crops, allows herbivores with flexible host preferences to reach pest-level populations. We conclude by arguing that in the new geological epoch we face, the Anthropocene, we can improve agriculture by looking to our past to identify and avoid missteps of early and recent farmers. Copyright © 2018 Elsevier Inc. All rights reserved.