Science.gov

Sample records for air entrainment admixtures

  1. Investigation of air-entraining admixture dosage in fly ash concrete

    SciTech Connect

    Ley, M.T.; Harris, N.J.; Folliard, K.J.; Hover, K.C.

    2008-09-15

    The amount of air-entraining admixture (AEA) needed to achieve a target air content in fresh concrete can vary significantly with differences in the fly ash used in the concrete. The work presented in this paper evaluates the ability to predict the AEA dosage on the basis of tests on the fly ash alone. All results were compared with the dosage of AEA required to produce an air content of 6% in fresh concrete. Fly ash was sampled from six separate sources. For four of these sources, samples were obtained both before and after the introduction of 'low-NOx burners'. Lack of definitive data about the coal itself or the specifics of the burning processes prevents the ability to draw specific conclusions about the impact of low-NOx burners on AEA demand. Nevertheless, the data suggest that modification of the burning process to meet environmental quality standards may affect the fly ash-AEA interaction.

  2. Air Entraining Flows

    NASA Astrophysics Data System (ADS)

    Prosperetti, Andrea

    2001-11-01

    Air entraining flows are frequently encountered in Nature (e.g. breaking waves, waterfalls, rain over water bodies) and in technological applications (gas-liquid chemical reactors, water treatment, aquaculture, and others). Superficially, one may distinguish between transient events, such as a breaking wave, and steady situations, e.g. a falling jet. However, when viscosity is not important, the process of air entrainment turns out to be the consequence of local transient events even in steady flows. For example, surface disturbances convected by a nominally steady jet impact the receiving liquid, create a deep depression, which collapses entraining an air pocket. (In practice this basic mechanism is complicated by the presence of waves, vortical flows, and other factors.) This talk will describe several examples of air-entraining flows illustrating the fluid mechanic principles involved with high-speed movies and numerical computations.

  3. Air entrainment in hairy surfaces

    NASA Astrophysics Data System (ADS)

    Nasto, Alice; Regli, Marianne; Brun, P.-T.; Alvarado, José; Clanet, Christophe; Hosoi, A. E.

    2016-07-01

    Motivated by diving semiaquatic mammals, we investigate the mechanism of dynamic air entrainment in hairy surfaces submerged in liquid. Hairy surfaces are cast out of polydimethylsiloxane elastomer and plunged into a fluid bath at different velocities. Experimentally, we find that the amount of air entrained is greater than what is expected for smooth surfaces. Theoretically, we show that the hairy surface can be considered as a porous medium and we describe the air entrainment via a competition between the hydrostatic forcing and the viscous resistance in the pores. A phase diagram that includes data from our experiments and biological data from diving semiaquatic mammals is included to place the model system in a biological context and predict the regime for which the animal is protected by a plastron of air.

  4. Measurement of air entrainment in plasma jets

    NASA Astrophysics Data System (ADS)

    Fincke, J. R.; Rodriquez, R.; Pentecost, C. G.

    The concentration and temperature of air entrained into argon and helium plasma jets has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The argon plasma flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition of turbulence occurs, air is rapidly mixed into the jet core. The location of the transition region is determined by the rapid cooling of the jet and the resulting increase in Reynolds number. In contrast, the helium plasma flow field never exceeds a Reynolds number of 200 and remains laminar. The entrainment process in this case is controlled by molecular diffusion rather than turbulent mixing.

  5. Measurement of air entrainment in plasma jets

    SciTech Connect

    Fincke, J.R.; Rodriquez, R.; Pentecost, C.G.

    1990-01-01

    The concentration and temperature of air entrained into argon and helium plasma jets has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The argon plasma flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition of turbulence occurs, air is rapidly mixed into the jet core. The location of the transition region is determined by the rapid cooling of the jet and the resulting increase in Reynolds number. In contrast, the helium plasma flow field never exceeds a Reynolds number of 200 and remains laminar. The entrainment process in this case is controlled by molecular diffusion rather than turbulent mixing. 9 refs., 5 figs., 1 tab.

  6. Entrainment Rate in Shallow Cumuli: Dependence on Entrained Dry Air Sources and Probability Density Functions

    NASA Astrophysics Data System (ADS)

    Lu, C.; Liu, Y.; Niu, S.; Vogelmann, A. M.

    2012-12-01

    In situ aircraft cumulus observations from the RACORO field campaign are used to estimate entrainment rate for individual clouds using a recently developed mixing fraction approach. The entrainment rate is computed based on the observed state of the cloud core and the state of the air that is laterally mixed into the cloud at its edge. The computed entrainment rate decreases when the air is entrained from increasing distance from the cloud core edge; this is because the air farther away from cloud edge is drier than the neighboring air that is within the humid shells around cumulus clouds. Probability density functions of entrainment rate are well fitted by lognormal distributions at different heights above cloud base for different dry air sources (i.e., different source distances from the cloud core edge). Such lognormal distribution functions are appropriate for inclusion into future entrainment rate parameterization in large scale models. To the authors' knowledge, this is the first time that probability density functions of entrainment rate have been obtained in shallow cumulus clouds based on in situ observations. The reason for the wide spread of entrainment rate is that the observed clouds are affected by entrainment mixing processes to different extents, which is verified by the relationships between the entrainment rate and cloud microphysics/dynamics. The entrainment rate is negatively correlated with liquid water content and cloud droplet number concentration due to the dilution and evaporation in entrainment mixing processes. The entrainment rate is positively correlated with relative dispersion (i.e., ratio of standard deviation to mean value) of liquid water content and droplet size distributions, consistent with the theoretical expectation that entrainment mixing processes are responsible for microphysics fluctuations and spectral broadening. The entrainment rate is negatively correlated with vertical velocity and dissipation rate because entrainment

  7. Response of entrained air-void systems in cement paste to pressure

    NASA Astrophysics Data System (ADS)

    Frazier, Robert

    2011-12-01

    Scope and Method of Study: Determine the response of entrained air-void systems in fresh cement paste to applied pressures by utilizing micro-computed tomography. Compare results to those suggested by the ASTM C231 Type B pressure meter calibration equations. Findings and Conclusions: The results of this research suggest that although the Type B pressure meter assumptions are valid for the compression of individual voids, the volume of air-voids which dissolve under pressure is significant enough to register noticeable errors when using a synthetic air-entraining admixture with the Type B pressure meter test. Results currently suggest that air-void systems with a significant percentage of small voids present will have higher deviation from the Boyle's Law model used by the Type B pressure meter due to the dissolution of these air-voids.

  8. Dry Air Entrainment into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovec, Gary J.; Atkinson, Robert J.; Hood, Robbie E.; LaFontaine, Frank J.

    2000-01-01

    Hurricane Earl formed in the Gulf of Mexico in September 1998. It quickly was upgraded from a tropical disturbance to tropical storm status and then to a hurricane. Earl possessed hybrid (tropical and extratropical) characteristics throughout its lifetime. The system maintained and erratic track, which led to wide variability in the operational track forecasts. It eventually made landfall on the Florida panhandle on 2 September and raced northeastward. During August and September 1998, NASA conducted the third Convection and Moisture Experiment (CAMEX-3). The experiment was focused on studying hurricanes with an emphasis toward developing a better understanding of their intensification and motion. Earl provides a unique opportunity to utilize high spatial and temporal resolution data collected from the DC-8 and high altitude ER-2 NASA platforms, which flew over Earl as it made landfall. These data can also be put into broader view provided by other instruments from the Geosychronous Operational Environmental Satellites (GOES) and the Tropical Rainfall Measuring Mission (TRMM) satellites. Hurricane Earl was affected by entrainment of dry air from the northwest. Hurricane Isis was intensifying and approaching the Mexican Pacific coast with its associated outflow potentially affecting the inflow into Earl as the storm neared Florida. In addition, a longwave synoptic trough circulation was present over the eastern U.S. Either or both of these could be responsible for the dry air into the system. This paper will focus on identifying the source of the dry by using upper-level wind and moisture fields derived from the GOES 6.7 um water vapor imagery. We will attempt to relate the large-scale observations to those from the NASA aircraft. An infrared instrument onboard the ER-2 also has a similar wavelength and may be able to confirm some of the GOES findings. In addition, a microwave radiometer with 4 channels focused on measuring precipitation and its associated ice

  9. Using Ultrasound to Characterize Pulp Slurries with Entrained Air

    SciTech Connect

    Bamberger, Judith A.

    2006-08-06

    The development of fast and practical methods for inspecting fiber suspensions is of great interest in the paper making industry. For process control and paper quality prediction, several elements of the refining process during paper making must be accurately monitored, including specific fiber properties, weight percent fiber (composition), degree of refining, amount of solids, and entrained air content. The results of previous ultrasonic studies applied to wood pulp provide guidance that ultrasound attenuation is information rich, and it does potentially provide a tool for consistency measurement. Ultrasound has the ability to penetrate dense suspensions such as wood pulp slurries. It is has been shown, in some studies, that ultrasound is sensitive to degree of refining. The effects of entrained air, additives, the origin and treatment of the fibers do however all influence the measured data. A series of measurements were made with hardwood and softwood slurries to evaluate the ability of measuring pulp consistency, solids, and entrained air. The attenuation through the slurry was measured as the ultrasound travels from one transducer through the slurry to the other. The measurements identified the presence of entrained air in the pulp samples. To better understand the effects of air, measurements were made at increasing pressures to show how increased pressure reduced the amount of air observed in the spectrum.

  10. Dispersal and air entrainment in unconfined dilute pyroclastic density currents

    NASA Astrophysics Data System (ADS)

    Andrews, Benjamin J.

    2014-09-01

    Unconfined scaled laboratory experiments show that 3D structures control the behavior of dilute pyroclastic density currents (PDCs) during and after liftoff. Experiments comprise heated and ambient temperature 20 μm talc powder turbulently suspended in air to form density currents within an unobstructed 8.5 × 6 × 2.6-m chamber. Comparisons of Richardson, thermal Richardson, Froude, Stokes, and settling numbers and buoyant thermal to kinetic energy densities show good agreement between experimental currents and dilute PDCs. The experimental Reynolds numbers are lower than those of PDCs, but the experiments are fully turbulent; thus, the large-scale dynamics are similar between the two systems. High-frequency, simultaneous observation in three orthogonal planes shows that the currents behave very differently than previous 2D (i.e., confined) currents. Specifically, whereas ambient temperature currents show radial dispersal patterns, buoyancy reversal, and liftoff of heated currents focuses dispersal along narrow axes beneath the rising plumes. The aspect ratios, defined as the current length divided by a characteristic width, are typically 2.5-3.5 in heated currents and 1.5-2.5 in ambient temperature currents, reflecting differences in dispersal between the two types of currents. Mechanisms of air entrainment differ greatly between the two currents: entrainment occurs primarily behind the heads and through the upper margins of ambient temperature currents, but heated currents entrain air through their lateral margins. That lateral entrainment is much more efficient than the vertical entrainment, >0.5 compared to ˜0.1, where entrainment is defined as the ratio of cross-stream to streamwise velocity. These experiments suggest that generation of coignimbrite plumes should focus PDCs along narrow transport axes, resulting in elongate rather than radial deposits.

  11. Entrainment.

    ERIC Educational Resources Information Center

    Carrier, Romance F.

    1978-01-01

    Presents a literature review including: (1) theoretical studies concerned with the development of methdology to determine the significance of entrainment effects to whale populations and ecosystems; and (2) site and laboratory studies. A list of 107 references drawn from the 1976 and 1977 literature is also presented. (HM)

  12. The Effect of Solid Admixtures on the Velocity of Motion of a Free Dusty Air Jet

    NASA Technical Reports Server (NTRS)

    Chernov, A. P.

    1957-01-01

    In dusty air flows occurring in industrial practice in transport by air pressure of friable materials, in the drying, annealing, and so forth, of a pulverized solid mass in suspension, and in other processes, the concentration of solid particles usually has a magnitude of the order of 1 kg per 1 kg of air. At such a concentration, the ratio of the volume of the particles to the volume of the air is small (less than one-thousandth part). However, regardless of this, the presence of a solid admixture manifests itself in the rules for the velocity distribution of the air in a dusty air flow. As a result, the rules of velocity change are different for clean and for dusty air flows. The estimation of the influence of the admixture on the velocity of the motion of the flow presents a definitive interest. One of the attempts to estimate that influence on the axial velocity of a free axially symmetrical jet with admixtures was made by Abramovich. Abramovich assumed beforehand that the fine particles of the admixture in the jet are subject to the motion of the air (that is, that the velocity of the admixture is approximately equal to the local velocity of the air); he then took as the basis of his considerations, in solving the problem, the condition that the amount of motion of the two-phase jet must be constant.

  13. Entrainment of Upper Level Dry Air Into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovec, Gary J.; Hood, Robbie E.; Atkinson, Robert J.; LaFontaine, Frank J.

    1999-01-01

    Hurricane Earl formed in the Gulf of Mexico in September 1998. It quickly was upgraded from a tropical disturbance to tropical storm status and then to a hurricane. Earl possessed hybrid (tropical and extratropical) characteristics throughout its lifetime. The system maintained and erratic track, which led to wide variability in the operational track forecasts. It eventually made landfall on the Florida panhandle on 2 September and raced northeastward. During August and September 1998, NASA conducted the third Convection and Moisture Experiment (CAMEX-3). The experiment was focused on studying hurricanes with an emphasis toward developing a better understanding of their intensification and motion. Earl provides a unique opportunity to utilize high spatial and temporal resolution data collected from the DC-8 and high altitude ER-2 NASA platforms, which flew over Earl as it made landfall. These data can also be put into broader view provided by other instruments from the Geosynchronous Operational Environmental Satellites (GOES) and the Tropical Rainfall Measuring Mission (TRMM) satellites. Hurricane Earl was affected by entrainment of dry air from the northwest. Hurricane Isis was intensifying and approaching the Mexican Pacific coast with its associated outflow potentially affecting the inflow into Earl as the storm neared Florida. In addition, a longwave synoptic trough circulation was present over the eastern U.S. Either or both of these could be responsible for the dry air into the system. This paper will focus on identifying the source of the dry by using upper-level wind and moisture fields derived from the GOES 6.7 um water vapor imagery. We will attempt to relate the large-scale observations to those from the NASA aircraft. An infrared instrument onboard the ER-2 also has a similar wavelength and may be able to confirm some of the GOES findings. In addition, a microwave radiometer with 4 channels focused on measuring precipitation and its associated ice

  14. PTV analysis of the entrained air into the diesel spray at high-pressure injection

    NASA Astrophysics Data System (ADS)

    Toda, Naoki; Yamashita, Hayato; Mashida, Makoto

    2014-08-01

    In order to clarify the effect of high-pressure injection on soot reduction in terms of the air entrainment into spray, the air flow surrounding the spray and set-off length indicating the distance from the nozzle tip to the flame region in diffusion diesel combustion were investigated using 300MPa injection of a multi-hole injector. The measurement of the air entrainment flow was carried out at non-evaporating condition using consecutive PTV (particle tracking velocimetry) method with a high-speed camera and a high-frequency pulse YAG laser. The set-off length was measured at highpressure and high-temperature using the combustion bomb of constant volume and optical system of shadow graph method. And the amount of air entrainment into spray until reaching set-off length in diffusion combustion was studied as a factor of soot formation.

  15. Effect of fast freeze-thaw cycles on mechanical properties of ordinary-air-entrained concrete.

    PubMed

    Shang, Huai-shuai; Cao, Wei-qun; Wang, Bin

    2014-01-01

    Freezing-thawing resistance is a very significant characteristic for concrete in severe environment (such as cold region with the lowest temperature below 0°C). In this study, ordinary-air-entrained (O-A-E) concrete was produced in a laboratory environment; the compressive strength, cubic compressive strength of C50, C40, C30, C25, and C20 ordinary-air-entrained concrete, tensile strength, and cleavage strength of C30 ordinary-air-entrained concrete were measured after fast freeze-thaw cycles. The effects of fast freeze-thaw cycles on the mechanical properties (compressive strength and cleavage strength) of ordinary-air-entrained concrete materials are investigated on the basis of the experimental results. And the concise mathematical formula between mechanical behavior and number of fast freeze-thaw cycles was established. The experiment results can be used as a reference in design, maintenance, and life prediction of ordinary-air-entrained concrete structure (such as dam, offshore platform, etc.) in cold regions.

  16. Effect of Fast Freeze-Thaw Cycles on Mechanical Properties of Ordinary-Air-Entrained Concrete

    PubMed Central

    Shang, Huai-shuai; Cao, Wei-qun; Wang, Bin

    2014-01-01

    Freezing-thawing resistance is a very significant characteristic for concrete in severe environment (such as cold region with the lowest temperature below 0°C). In this study, ordinary-air-entrained (O-A-E) concrete was produced in a laboratory environment; the compressive strength, cubic compressive strength of C50, C40, C30, C25, and C20 ordinary-air-entrained concrete, tensile strength, and cleavage strength of C30 ordinary-air-entrained concrete were measured after fast freeze-thaw cycles. The effects of fast freeze-thaw cycles on the mechanical properties (compressive strength and cleavage strength) of ordinary-air-entrained concrete materials are investigated on the basis of the experimental results. And the concise mathematical formula between mechanical behavior and number of fast freeze-thaw cycles was established. The experiment results can be used as a reference in design, maintenance, and life prediction of ordinary-air-entrained concrete structure (such as dam, offshore platform, etc.) in cold regions. PMID:24895671

  17. Quantification of hood effectiveness and entrained subsurface air in a Seattle Hospital

    SciTech Connect

    Dietz, R.N.; Goodrich, R.W.

    1994-05-01

    An underground 3-story wing of a hospital having problems with sewer air odors was tested with perfluorocarbon tracer (PFI) technology to quantify the performance of the mechanical ventilation system and determine the extent of sewer air entrainment and chemical hood effectiveness.

  18. Coherent anti-Stokes Raman spectroscopic measurement of air entrainment in argon plasma jets

    SciTech Connect

    Fincke, J.R.; Rodriquez, R.; Pentecost, C.G.

    1990-01-01

    The concentration and temperature of air entrained into an argon plasma jet has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition to turbulence occurs, air is rapidly entrained into the jet core. The location of the transition region is thought to be driven by the rapid cooling of the jet and the resulting increase in Reynolds number. 8 refs., 6 figs.

  19. Coherent anti-Stokes Raman spectroscopic measurement of air entrainment in argon plasma jets

    NASA Astrophysics Data System (ADS)

    Fincke, J. R.; Rodriquez, R.; Pentecost, C. G.

    The concentration and temperature of air entrained into an argon plasma jet has been measured using coherent anti-Stokes Raman spectroscopy (CARS). The flow field is characterized by a short region of well behaved laminar flow near the nozzle exit followed by an abrupt transition to turbulence. Once the transition to turbulence occurs, air is rapidly entrained into the jet core. The location of the transition region is thought to be driven by the rapid cooling of the jet and the resulting increase in Reynolds number.

  20. Air Entrainment and Thermal Evolution of Pyroclastic Density Currents at Tungurahua, Ecuador

    NASA Astrophysics Data System (ADS)

    Benage, M. C.; Dufek, J.; Mothes, P. A.

    2015-12-01

    The entrainment of air into pyroclastic density currents (PDCs) impacts the thermal profile and evolution of the current. However, the associated hazards and opaqueness of PDCs make it difficult to discern internal dynamics and entrainment through direct observations. In this work, we use a three-dimensional multiphase Eulerian-Eulerian-Lagrangian (EEL) model, deposit descriptions, and pyroclast field data, such as paleomagnetic and rind thickness, to study the entrainment efficiency and thus the thermal history of PDCs down the Juive Grande quebrada during the August 16-17th 2006 eruption of Tungurahua volcano. We conclude that 1) the efficient entrainment of ambient air cools the nose and upper portion of the PDCs by 30-60% of the original temperature, 2) PDCs with an initial temperature of 727 °C are on average more efficient at entraining ambient air than PDCs with an initial temperature of 327 °C, 3) the channelized PDCs develop a particle concentration gradient with a concentrated bed load region and suspended load region that leads to a large vertical temperature gradient, and 4) observations and pyroclast temperatures and textures suggest that the PDCs had temperatures greater than 327 °C in the bed load region while the upper, exterior portion of the currents cooled down to temperatures less than 100 °C. By combining field data and numerical models, the structure and dynamics of a PDC can be deduced for these relatively common small volume PDCs.

  1. Experimental study of near-field air entrainment by subsonic volcanic jets

    USGS Publications Warehouse

    Solovitz, S.A.; Mastin, L.G.

    2009-01-01

    The flow structure in the developing region of a turbulent jet has been examined using particle image velocimetry methods, considering the flow at steady state conditions. The velocity fields were integrated to determine the ratio of the entrained air speed to the jet speed, which was approximately 0.03 for a range of Mach numbers up to 0.89 and. Reynolds numbers up to 217,000. This range of experimental Mach and Reynolds numbers is higher than previously considered for high-accuracy entrainment measures, particularly in the near-vent region. The entrainment values are below those commonly used for geophysical analyses of volcanic plumes, suggesting that existing 1-D models are likely to understate the tendency for column collapse. Copyright 2009 by the American Geophysical Union.

  2. Large Field of View PIV Measurements of Air Entrainment by SLS SMAT Water Sound Suppression System

    NASA Astrophysics Data System (ADS)

    Stegmeir, Matthew; Pothos, Stamatios; Bissell, Dan

    2015-11-01

    Water-based sound suppressions systems have been used to reduce the acoustic impact of space vehicle launches. Water flows at a high rate during launch in order to suppress Engine Generated Acoustics and other potentially damaging sources of noise. For the Space Shuttle, peak flow rates exceeded 900,000 gallons per minute. Such large water flow rates have the potential to induce substantial entrainment of the surrounding air, affecting the launch conditions and generating airflow around the launch vehicle. Validation testing is necessary to quantify this impact for future space launch systems. In this study, PIV measurements were performed to map the flow field above the SMAT sub-scale launch vehicle scaled launch stand. Air entrainment effects generated by a water-based sound suppression system were studied. Mean and fluctuating fluid velocities were mapped up to 1m above the test stand deck and compared to simulation results. Measurements performed with NASA MSFC.

  3. Material Properties Governing Co-Current Flame Spread: The Effect of Air Entrainment

    NASA Technical Reports Server (NTRS)

    Coutin, Mickael; Rangwala, Ali S.; Torero, Jose L.; Buckley, Steven G.

    2003-01-01

    A study on the effects of lateral air entrainment on an upward spreading flame has been conducted. The fuel is a flat PMMA plate of constant length and thickness but variable width. Video images and surface temperatures have allowed establishing the progression of the pyrolyis front and on the flame stand-off distance. These measurements have been incorporated into a theoretical formulation to establish characteristic mass transfer numbers ("B" numbers). The mass transfer number is deemed as a material related parameter that could be used to assess the potential of a material to sustain co-current flame spread. The experimental results show that the theoretical formulation fails to describe heat exchange between the flame and the surface. The discrepancies seem to be associated to lateral air entrainment that lifts the flame off the surface and leads to an over estimation of the local mass transfer number. Particle Image Velocimetry (PIV) measurements are in the process of being acquired. These measurements are intended to provide insight on the effect of air entrainment on the flame stand-off distance. A brief description of the methodology to be followed is presented here.

  4. Using Neutron Radiography to Quantify Water Transport and the Degree of Saturation in Entrained Air Cement Based Mortar

    NASA Astrophysics Data System (ADS)

    Lucero, Catherine L.; Bentz, Dale P.; Hussey, Daniel S.; Jacobson, David L.; Weiss, W. Jason

    Air entrainment is commonly added to concrete to help in reducing the potential for freeze thaw damage. It is hypothesized that the entrained air voids remain unsaturated or partially saturated long after the smaller pores fill with water. Small gel and capillary pores in the cement matrix fill quickly on exposure to water, but larger pores (entrapped and entrained air voids) require longer times or other methods to achieve saturation. As such, it is important to quantitatively determine the water content and degree of saturation in air entrained cementitious materials. In order to further investigate properties of cement-based mortar, a model based on Beer's Law has been developed to interpret neutron radiographs. This model is a powerful tool for analyzing images acquired from neutron radiography. A mortar with a known volume of aggregate, water to cement ratio and degree of hydration can be imaged and the degree of saturation can be estimated.

  5. Pyrrhotite Oxidation as an Indicator of Air Entrainment into Eruption Columns

    NASA Astrophysics Data System (ADS)

    Matsumoto, K.; Nakamura, M.

    2015-12-01

    Fragmented magmas in eruption columns obtain buoyancy by entrainment and heating of cold air. Theoretically, the proportion of the entrained air and temperature change of the magma fragments can be calculated through rigorous fluid dynamics, but these factors have not been evaluated from natural pyroclasts. In this study, we developed a new method for quantifying the degree of air entrainment based on pyrrhotite (Po) oxidation reactions, whose time scale corresponds to the typical duration of (sub-) Plinian eruptions (i.e., tens of seconds to a few hours). We examined pumice clasts and lava flows from the 1914-15 eruption of Sakurajima. During this event, various types of eruption were observed: Plinian eruptions with intermittent generation of clastogenic lava flow, followed by voluminous effusive lava flow. The products of Po oxidation consisted of magnetite (Mt), hematite (Hm), and their composites. The occurrence of Po and the oxides were systematically correlated with the types of eruption. In Plinian pumices, unreacted Po ± porous Mt-Hm composite reaction rims were dominant, whereas in the clastogenic lava, porous Hm occurred predominantly with scarce unreacted Po and porous Mt. In the effusive lava, a variety of Po, Mt, and Hm assemblage was observed, but Po did not coexist with Hm-rims. The porous Mt crystals in the pumice clasts were found to be Ti-free, whereas those in the effusive lava had Ti-enriched rims. These correlations were explained by considering two factors: the achieved fO2, which was controlled by the extent of fragmentation (i.e., surface area exposed to air), and duration of the maintenance of a high-T and high-fO2 condition. This study has demonstrated that the cooling timescale of pumice clasts in eruption columns can be estimated through the rate of Po oxidation reactions Po→Mt and Mt→Hm. Lavas of clastogenic origin may also be recognized from the reaction.

  6. Keeping warm with fur in cold water: entrainment of air in hairy surfaces

    NASA Astrophysics Data System (ADS)

    Nasto, Alice; Regli, Marianne; Brun, Pierre-Thomas; Clanet, Christophe; Hosoi, Anette

    2015-11-01

    Instead of relying on a thick layer of body fat for insulation as many aquatic mammals do, fur seals and otters trap air in their dense fur for insulation in cold water. Using a combination of model experiments and theory, we rationalize this mechanism of air trapping underwater for thermoregulation. For the model experiments, hairy surfaces are fabricated using laser cut molds and casting samples with PDMS. Modeling the hairy texture as a network of capillary tubes, the imbibition speed of water into the hairs is obtained through a balance of hydrostatic pressure and viscous stress. In this scenario, the bending of the hairs and capillary forces are negligible. The maximum diving depth that can be achieved before the hairs are wetted to the roots is predicted from a comparison of the diving speed and imbibition speed. The amount of air that is entrained in hairy surfaces is greater than what is expected for classic Landau-Levich-Derjaguin plate plunging. A phase diagram with the parameters from experiments and biological data allows a comparison of the model system and animals.

  7. Air entrainment and bubble statistics in three-dimensional breaking waves

    NASA Astrophysics Data System (ADS)

    Deike, Luc; Melville, W. K.; Popinet, Stephane

    2015-11-01

    Wave breaking in the ocean is of fundamental importance in order to quantify wave dissipation and air-sea interaction, including gas and momentum exchange, and to improve parametrizationsfor weather and climate models. Here, we investigate air entrainment and bubble statistics in three-dimensional breaking waves through direct numerical simulations of the two-phase air-water flow using the Open Source solver Gerris. As in previous 2D simulations, the dissipation due to breaking is found to be in good agreement with previous experimental observations and inertial-scaling arguments. For radii larger than the Hinze scale, the bubble size distribution, is found to follow a power law of the radius, r-3and to scale linearly with the time dependent turbulent dissipation rate during the active breaking stages. The time-averaged bubble size distribution is found to follow the same power law of the radius and to scale linearly with the wave dissipation rate per unit length of breaking crest. We propose a phenomenological turbulent bubble break-up model that describes the numerical results and existing experimental results.

  8. Aerosol and Dry Air Entrainment Impacts on Thermally Driven Orographic Clouds and the Development of Precipitation

    NASA Astrophysics Data System (ADS)

    Nugent, A. D.; Watson, C. D.; Thompson, G.; Smith, R. B.

    2014-12-01

    Precipitation generation in a cumulus cloud depends on the nature of available aerosols and the turbulent entrainment of dry air. These two processes were observed in the orographic clouds during the DOMEX (Dominica Experiment) field campaign. On days with thermally driven convection, little precipitation develops and the orographic clouds are composed on average of clouds with 125 cm-3 droplet number concentration and 15 μm cloud droplet diameter. Aerosol number concentrations as high as 325 cm-3 are found in the detrained air above the tropical island of Dominica. The island surface aerosol source and the relatively dry cloud layer are two independent variables that play a role in the composition and development of the observed orographic clouds. We use idealized 3D WRF simulations with the new aerosol-aware Thompson and Eidhammer microphysics scheme to compare with observations. A 1 km high mountain with a constant surface sensible heat flux drives convection with no background wind. Four simulations are performed to explore the parameter space with and without an aerosol source, and with a dry and moist cloud layer: (1) aerosol source / dry, (2) aerosol source / moist, (3) no source / dry, and (4) no source / moist. The aerosol source is composed of an organic-like aerosol with a mean radius of 0.08 μm and a hygroscopicity of 0.6. The aerosol flux comes only from the island surface at a rate of 5 aerosols cm-3 s-1 or 1.5x108 aerosols m-2 s-1. Precipitation efficiency, drying ratio, and microphysical conversion rates of liquid water are computed and tracked, and cloud and rain water mass and number budgets are completed. Comparing the development of orographic clouds and precipitation in the four simulations leads toward an improved understanding of the observations and the relative controls on convection.

  9. High temperature air-blown woody biomass gasification model for the estimation of an entrained down-flow gasifier.

    PubMed

    Kobayashi, Nobusuke; Tanaka, Miku; Piao, Guilin; Kobayashi, Jun; Hatano, Shigenobu; Itaya, Yoshinori; Mori, Shigekatsu

    2009-01-01

    A high temperature air-blown gasification model for woody biomass is developed based on an air-blown gasification experiment. A high temperature air-blown gasification experiment on woody biomass in an entrained down-flow gasifier is carried out, and then the simple gasification model is developed based on the experimental results. In the experiment, air-blown gasification is conducted to demonstrate the behavior of this process. Pulverized wood is used as the gasification fuel, which is injected directly into the entrained down-flow gasifier by the pulverized wood banner. The pulverized wood is sieved through 60 mesh and supplied at rates of 19 and 27kg/h. The oxygen-carbon molar ratio (O/C) is employed as the operational condition instead of the air ratio. The maximum temperature achievable is over 1400K when the O/C is from 1.26 to 1.84. The results show that the gas composition is followed by the CO-shift reaction equilibrium. Therefore, the air-blown gasification model is developed based on the CO-shift reaction equilibrium. The simple gasification model agrees well with the experimental results. From calculations in large-scale units, the cold gas is able to achieve 80% efficiency in the air-blown gasification, when the woody biomass feedrate is over 1000kg/h and input air temperature is 700K.

  10. Experimental study on durability improvement of fly ash concrete with durability improving admixture.

    PubMed

    Quan, Hong-zhu; Kasami, Hideo

    2014-01-01

    In order to improve the durability of fly ash concrete, a series of experimental studies are carried out, where durability improving admixture is used to reduce drying shrinkage and improve freezing-thawing resistance. The effects of durability improving admixture, air content, water-binder ratio, and fly ash replacement ratio on the performance of fly ash concrete are discussed in this paper. The results show that by using durability improving admixture in nonair-entraining fly ash concrete, the compressive strength of fly ash concrete can be improved by 10%-20%, and the drying shrinkage is reduced by 60%. Carbonation resistance of concrete is roughly proportional to water-cement ratio regardless of water-binder ratio and fly ash replacement ratio. For the specimens cured in air for 2 weeks, the freezing-thawing resistance is improved. In addition, by making use of durability improving admixture, it is easier to control the air content and make fly ash concrete into nonair-entraining one. The quality of fly ash concrete is thereby optimized.

  11. Experimental Study on Durability Improvement of Fly Ash Concrete with Durability Improving Admixture

    PubMed Central

    Quan, Hong-zhu; Kasami, Hideo

    2014-01-01

    In order to improve the durability of fly ash concrete, a series of experimental studies are carried out, where durability improving admixture is used to reduce drying shrinkage and improve freezing-thawing resistance. The effects of durability improving admixture, air content, water-binder ratio, and fly ash replacement ratio on the performance of fly ash concrete are discussed in this paper. The results show that by using durability improving admixture in nonair-entraining fly ash concrete, the compressive strength of fly ash concrete can be improved by 10%–20%, and the drying shrinkage is reduced by 60%. Carbonation resistance of concrete is roughly proportional to water-cement ratio regardless of water-binder ratio and fly ash replacement ratio. For the specimens cured in air for 2 weeks, the freezing-thawing resistance is improved. In addition, by making use of durability improving admixture, it is easier to control the air content and make fly ash concrete into nonair-entraining one. The quality of fly ash concrete is thereby optimized. PMID:25013870

  12. Entrainment Heat Flux Computed with Lidar and Wavelet Technique in Buenos Aires During Last Chaitén Volcano Eruption

    NASA Astrophysics Data System (ADS)

    Pawelko, Ezequiel Eduardo; Salvador, Jacobo Omar; Ristori, Pablo Roberto; Pallotta, Juan Vicente; Otero, Lidia Ana; Quel, Eduardo Jaime

    2016-06-01

    At Lidar Division of CEILAP (CITEDEF-CONICET) a multiwavelength Raman-Rayleigh lidar optimized to measure the atmospheric boundary layer is being operated. This instrument is used for monitoring important aerosol intrusion events in Buenos Aires, such as the arrival of volcanic ashes from the Chaitén volcano eruption on May 2008. That was the first monitoring of volcanic ash with lidar in Argentina. In this event several volcanic ash plumes with high aerosol optical thickness were detected in the free atmosphere, affecting the visibility, surface radiation and therefore, the ABL evolution. In this work, the impact of ashes in entrainment flux ratio is studied. This parameter is obtained from the atmospheric boundary layer height and entrainment zone thickness using algorithms based on covariance wavelet transform.

  13. Two-phase numerical study of the flow field formed in water pump sump: influence of air entrainment

    NASA Astrophysics Data System (ADS)

    Bayeul-Lainé, A. C.; Simonet, S.; Bois, G.; Issa, A.

    2012-11-01

    In a pump sump it is imperative that the amount of non-homogenous flow and entrained air be kept to a minimum. Free air-core vortex occurring at a water-intake pipe is an important problem encountered in hydraulic engineering. These vortices reduce pump performances, may have large effects on the operating conditions and lead to increase plant operating costs.This work is an extended study starting from 2006 in LML and published by ISSA and al. in 2008, 2009 and 2010. Several cases of sump configuration have been numerically investigated using two specific commercial codes and based on the initial geometry proposed by Constantinescu and Patel. Fluent and Star CCM+ codes are used in the previous studies. The results, obtained with a structured mesh, were strongly dependant on main geometrical sump configuration such as the suction pipe position, the submergence of the suction pipe on one hand and the turbulence model on the other hand. Part of the results showed a good agreement with experimental investigations already published. Experiments, conducted in order to select best positions of the suction pipe of a water-intake sump, gave qualitative results concerning flow disturbances in the pump-intake related to sump geometries and position of the pump intake. The purpose of this paper is to reproduce the flow pattern of experiments and to confirm the geometrical parameter that influences the flow structure in such a pump. The numerical model solves the Reynolds averaged Navier-Stokes (RANS) equations and VOF multiphase model. STAR CCM+ with an adapted mesh configuration using hexahedral mesh with prism layer near walls was used. Attempts have been made to calculate two phase unsteady flow for stronger mass flow rates and stronger submergence with low water level in order to be able to capture air entrainment. The results allow the knowledge of some limits of numerical models, of mass flow rates and of submergences for air entrainment. In the validation of this

  14. Effect of high doses of chemical admixtures on the strength development and freeze-thaw durability of portland cement mortar

    NASA Astrophysics Data System (ADS)

    Korhonen, Charles J.

    This thesis examines the low-temperature strength development of portland cement concrete made with high doses of chemical admixtures dissolved in the mixing water and the possible beneficial effect of these admixtures on that concrete's long-term freeze-thaw durability. The literature shows that high doses of chemical admixtures can protect fresh concrete against freezing and that, under certain conditions, these admixtures can enhance the freeze-thaw durability of concrete. The challenge is that there are no acceptance standards in the U.S. that allow chemicals to be used to protect concrete against freezing. Also, the perception is that chemicals might somehow harm the concrete. This perception seems to be based on the fact that deicing salts, when applied to concrete pavement, cause roadways to scale away. This study investigated the effect of high doses of commercially available admixtures on fresh concrete while it gained strength at low temperature and on hardened concrete exposed to repeated cycles of freezing and thawing in a moist environment. The reason for studying off-the-shelf admixtures was that these materials are approved for use in concrete; they were already governed by their own set of standards. Four mortars were examined, each with a different cement and water content, when dosed with five commercial admixtures. This allowed the fresh mortar to gain appreciable strength when it was kept at nearly -10C. The admixtures also enhanced the freeze-thaw durability of the mortar, even when it was not air-entrained. Clearly, as the dosage of admixture increased beyond approximately 22% by weight of water, the mortar appeared to be unaffected by up to 700 cycles of freezing and thawing.

  15. Effect of an entrained air bubble on the acoustics of an ink channel.

    PubMed

    Jeurissen, Roger; de Jong, Jos; Reinten, Hans; van den Berg, Marc; Wijshoff, Herman; Versluis, Michel; Lohse, Detlef

    2008-05-01

    Piezo-driven inkjet systems are very sensitive to air entrapment. The entrapped air bubbles grow by rectified diffusion in the ink channel and finally result in nozzle failure. Experimental results on the dynamics of fully grown air bubbles are presented. It is found that the bubble counteracts the pressure buildup necessary for the droplet formation. The channel acoustics and the air bubble dynamics are modeled. For good agreement with the experimental data it is crucial to include the confined geometry into the model: The air bubble acts back on the acoustic field in the channel and thus on its own dynamics. This two-way coupling limits further bubble growth and thus determines the saturation size of the bubble.

  16. Effect of the entrained air and initial droplet velocity on the release height parameter of a Gaussian spray drift model.

    PubMed

    Stainier, C; Destain, M F; Schiffers, B; Lebeau, F

    2006-01-01

    The increased concern about environmental effect of off-target deposits of pesticides use has resulted in the development of numerous spray drift models. Statistical models based on experimental field studies are used to estimate off-target deposits for different sprayers in various environmental conditions. Random-walk and computational fluid dynamics (CFD) models have been used to predict the effect of operational parameters and were extensively validated in wind tunnel. A third group, Gaussian dispersion models have been used for several years for the environmental assessment of the pesticide spray drift, mainly for aerial application. When these models were used for the evaluation of boom sprayer spray drift, their predictions were found unreliable in the short range, were the initial release conditions of the droplets have a significant effect on the spray deposits. For longer ranges, the results were found consistent with the field measurements as the characteristics of the source have a reduced influence on the small droplets drift. Three major parameters must be taken into account in order to define realistic initial conditions of the droplets in a spray drift model: the spray pattern of the nozzle, the boom movements and the effect of entrained air and droplet velocities. To take theses parameters into account in a Gaussian model, the nozzle droplet size distribution measured with a PIV setup to divide the nozzle output into several size classes. The spray deposits of each diameter class was computed for each successive position of the nozzle combining the nozzle spray distribution with drift computed with a Gaussian tilting plume model. The summation of these footprints resulted in the global drift of the nozzle. For increasing droplet size, the release height used in the Gaussian model was decreased from nozzle height to ground level using an experimental law to take into account the effect of entrained air and droplet initial velocity. The experimental

  17. Size distribution of oceanic air bubbles entrained in sea-water by wave-breaking

    NASA Technical Reports Server (NTRS)

    Resch, F.; Avellan, F.

    1982-01-01

    The size of oceanic air bubbles produced by whitecaps and wave-breaking is determined. The production of liquid aerosols at the sea surface is predicted. These liquid aerosols are at the origin of most of the particulate materials exchanged between the ocean and the atmosphere. A prototype was designed and built using an optical technique based on the principle of light scattering at an angle of ninety degrees from the incident light beam. The output voltage is a direct function of the bubble diameter. Calibration of the probe was carried out within a range of 300 microns to 1.2 mm. Bubbles produced by wave-breaking in a large air-sea interaction simulating facility. Experimental results are given in the form of size spectrum.

  18. Airborne & SAR Synergy Reveals the 3D Structure of Air Bubble Entrainment in Internal Waves and Frontal Zones

    NASA Astrophysics Data System (ADS)

    da Silva, J. C. B.; Magalhaes, J. M.; Batista, M.; Gostiaux, L.; Gerkema, T.; New, A. L.

    2013-03-01

    Internal waves are now recognised as an important mixing mechanism in the ocean. Mixing at the base of the mixed layer and in the seasonal thermocline affects the properties of those water masses which define the exchange of heat and freshwater between the atmosphere and ocean. The breaking of Internal Solitary Waves (ISWs) contributes significantly to turbulent mixing in the near-surface layers, through the continual triggering of instabilities as they propagate and shoal towards the coast or shallow topography. Here we report some results of the EU funded project A.NEW (Airborne observations of Nonlinear Evolution of internal Waves generated by internal tidal beams). The airborne capabilities to observe small scale structure of breaking internal waves in the near-shore zone has been demonstrated in recent studies (e.g. Marmorino et al., 2008). In particular, sea surface thermal signatures of shoaling ISWs have revealed the turbulent character of these structures in the form of surface “boil” features. On the other hand, some in situ measurements of internal waves and theoretical work suggest subsurface entrainment of air bubbles in the convergence zones of ISWs (Serebryany and Galybin, 2009; Grimshaw et al., 2010). We conducted airborne remote sensing observations in the coastal zone off the west Iberian Peninsula (off Lisbon, Portugal) using high resolution imaging sensors: LiDAR (Light Detection And Ranging), hyperspectral cameras (Eagle and Hawk) and thermal infrared imaging (TABI-320). These measurements were planned based on previous SAR observations in the region, which included also near-real time SAR overpasses (ESA project AOPT-2423 and TerraSAR-X project OCE-0056). The airborne measurements were conducted from board the NERC (Natural Environmental Research Centre) Do 228 aircraft in the summer of 2010. The TABI-320 thermal airborne broadband imager can distinguish temperature differences as small as one-twentieth of a degree and operates in the

  19. ENTRAINMENT BY LIGAMENT-CONTROLLED EFFERVESCENT ATOMIZER-PRODUCED SPRAYS

    EPA Science Inventory

    Entrainment of ambient air into sprays produced by a new type of effervescent atomizer is reported. Entrainment data were obtained using a device similar to that described by Ricou & Spalding (1961). Entrainment data were analyzed using the model of Bush & Sojka (1994), in concer...

  20. An observational study of entrainment rate in deep convection

    SciTech Connect

    Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; Zhang, Guang Jun; Liu, Yangang

    2015-09-22

    This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal, gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.

  1. An observational study of entrainment rate in deep convection

    DOE PAGES

    Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; Zhang, Guang Jun; Liu, Yangang

    2015-09-22

    This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal,more » gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.« less

  2. Fuel admixture device

    SciTech Connect

    Morris, G.Q.

    1987-06-16

    An apparatus is described for mixing fuel and air for supply to an internal combustion engine comprising: carburetor body means having walls defining air inlet conduit for flowing air to the engine; the air inlet means having a venturi constriction portion disposed by configuring the air inlet conduit means to have a first convergent. Divergent cross-sections has a configuration in the direction of air flowing through the inlet conduit; booster cylinder means disposed in the air inlet conduit proximate the venturi constriction portions such that a peripheral venturi is defined between the outside of the booster cylinder and the venturi constriction portion of the the walls of the air inlet means; essentially annular supply channel means disposed about the air inlet conduit means; essentially annular distribution channel means disposed about the air inlet conduit means; transfer channel means connected to the supply channel means and connected to the distribution channel means; fuel supply means connected to the distribution channel means for supplying metered fuel to the supply channel means; fuel outlet means connected to the supply channel means and connected to the peripheral venturi proximate the most constricted portion thereof; the fuel outlet means connecting to the peripheral venturi in an annular manner such that fuel flowing from the fuel outlet means into the peripheral venturi means is distributed into air flowing through the peripheral venturi means; and the transfer channel means having predetermined flow capacity and predetermined location of connection to the supply channel means in order to distribute fuel into the supply channel. The fuel is distributed from the fuel outlet into the peripheral venturi means in an essentially symmetrical pattern.

  3. Physiology of circadian entrainment.

    PubMed

    Golombek, Diego A; Rosenstein, Ruth E

    2010-07-01

    Mammalian circadian rhythms are controlled by endogenous biological oscillators, including a master clock located in the hypothalamic suprachiasmatic nuclei (SCN). Since the period of this oscillation is of approximately 24 h, to keep synchrony with the environment, circadian rhythms need to be entrained daily by means of Zeitgeber ("time giver") signals, such as the light-dark cycle. Recent advances in the neurophysiology and molecular biology of circadian rhythmicity allow a better understanding of synchronization. In this review we cover several aspects of the mechanisms for photic entrainment of mammalian circadian rhythms, including retinal sensitivity to light by means of novel photopigments as well as circadian variations in the retina that contribute to the regulation of retinal physiology. Downstream from the retina, we examine retinohypothalamic communication through neurotransmitter (glutamate, aspartate, pituitary adenylate cyclase-activating polypeptide) interaction with SCN receptors and the resulting signal transduction pathways in suprachiasmatic neurons, as well as putative neuron-glia interactions. Finally, we describe and analyze clock gene expression and its importance in entrainment mechanisms, as well as circadian disorders or retinal diseases related to entrainment deficits, including experimental and clinical treatments. PMID:20664079

  4. New advanced shotcrete admixtures: Internal curing

    SciTech Connect

    Melbye, T.A.

    1995-12-31

    Tunnels and other underground construction projects have one of the worst curing conditions due to the ventilation that blows continuously dry (cold or hot) air into the tunnel. It can be compared with concrete exposed to a windy area. One would think that tunnels have ideal curing conditions with high humidity (water leakage), no wind and no sun exposure. However, this is not the case. MBT has developed a new system for more efficient and secure curing of wet shotcrete, repair mortars as well as concrete. Internal curing means that a special admixture is added to the concrete/mortar during batching as a normal admixture. This admixture produces an internal barrier in the shotcrete/concrete which secures safer hydration and better chemical resistance than the application of conventional curing agents. The benefits resulting from the new technology are impressive: The time consuming application and, in the case of various shotcrete layers, removal of curing agents are no longer necessary; curing is guaranteed from the very beginning of hydration; and there is no negative influence on bonding between layers. As a consequence of th is optimum curing effect, all other shotcrete characteristics are improved: density, final strengths, freeze/thaw and chemical resistances, watertightness, less cracking and shrinkage. In addition, MEYCO TCC 735 also improves pumpability and workability of shotcrete, even with low-grade aggregates. It particularly improves the pumpability of steel fiber reinforced shotcrete mixes. In combination with the MEYCO TCC system it contrives to even increase the beneficial effects of the slump killing system by further improving fiber orientation, reducing fiber rebound and thus raising toughness values.

  5. Topological Signatures for Population Admixture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Topological Signatures for Population AdmixtureDeniz Yorukoglu1, Filippo Utro1, David Kuhn2, Saugata Basu3 and Laxmi Parida1* Abstract Background: As populations with multi-linear transmission (i.e., mixing of genetic material from two parents, say) evolve over generations, the genetic transmission...

  6. Entrainment and mixing mechanism in monsoon clouds

    NASA Astrophysics Data System (ADS)

    Bera, Sudarsan; Prabhakaran, Thara; Pandithurai, Govindan; Brenguier, Jean-Louis

    2015-04-01

    Entrainment and consequent mixing impacts the cloud microphysical parameters and droplet size distribution (DSD) significantly which are very important for cloud radiative properties and the mechanism for first rain drop formation. The entrainment and mixing mechanisms are investigated in this study using in situ observations in warm cumulus clouds over monsoon region. Entrainment is discussed in the framework of the homogeneous and inhomogeneous mixing concepts and their effects on cloud droplet size distribution, number concentration, liquid water content and mean radius are described. The degree of homogeneity increases with droplet number concentration and adiabatic fraction, indicating homogeneous type mixing in the cloud core where dilution is less. Inhomogeneous mixing is found to be a dominating process at cloud edges where dilution is significant. Cloud droplet size distribution (DSD) is found to shift towards lower sizes during a homogeneous mixing event in the cloud core whereas spectral width of DSD decreases due to inhomogeneous mixing at cloud edges. Droplet size spectra suggests that largest droplets are mainly formed in the less diluted cloud core while diluted cloud edges have relatively smaller droplets, so that raindrop formation occurs mainly in the core of the cloud. The origin of the entrained parcels in deep cumulus clouds is investigated using conservative thermodynamical parameters. The entrained parcels originate from a level close to the observation level or slightly below through lateral edges. Cloud edges are significantly diluted due to entrainment of sub-saturated environmental air which can penetrate several hundred meters inside the cloud before it gets mixed completely with the cloud mass. Less diluted parcels inside the cloud core originates from a level much below the cloud base height. Penetrating downdraft from cloud top is seldom observed at the observation level and strong downdrafts may be attributed to in-cloud oscillation

  7. Mesler entrainment in alcohols

    NASA Astrophysics Data System (ADS)

    Saylor, J. R.; Sundberg, R. K.

    2012-11-01

    When a drop impacts a flat surface of the same liquid at an intermediate velocity, the impact can result in the formation of a very large number of very small bubbles. At lower velocities, drops bounce or float, and at larger velocities a single bubble forms, or there is a splash. The formation of large numbers of small bubbles during intermediate velocity impacts is termed Mesler entrainment and its controlling mechanism is poorly understood. Existing research has shown that Mesler entrainment is highly irreproducible when water is the working fluid, and very reproducible when silicone oil is the working fluid. Whether this is because water is problematic, or silicone oil is uniquely well-suited, is unclear. To answer this question, experiments were conducted using three different alcohols. The results of these experiments were very reproducible for all alcohols tested, suggesting that there is something unique about water which accounts for its lack of reproducibility. The data from these experiments were also used to develop a dimensionless group that quantifies the conditions under which Mesler entrainment occurs. This dimensionless group is used to provide insight into the mechanism of this unique method of bubble formation.

  8. Defining the Entrainment Zone in Stratocumulus-topped Boundary Layers

    NASA Astrophysics Data System (ADS)

    Wang, Q.; Zhou, M.; Kalogiros, J. A.; Lenschow, D. H.; Dai, C.; Wang, S.

    2010-12-01

    The presence of an entrainment zone near the top of the stratocumulus-topped boundary layers has been identified by many early studies. However, the definition of the entrainment zone was rather vague. We have examined the fine vertical variations of cloud liquid water content, wind, temperature and humidity near the stratocumulus top and developed a new method to identify the entrainment zone objectively. Aircraft measurements from various field projects in stratocumulus-topped boundary layers are used, taking advantage of the fast sampling capability of many of the aircraft sensors. Because of the inhomogeneous mixing of two air masses with distinctively different thermodynamic properties, the magnitude of temperature perturbations within the entrainment zone is significantly larger than those above or below. This characteristics is used to define the upper and lower boundaries of the entrainment zone using a wavelet spectra analyses. The definition of the entrainment zone is further evaluated by the presence of a linear mixing line through mixing line analyses. Various other interfaces at the cloud top are also examined, including the cloud interface, temperature interface (inversion), and moisture interface. The heights of these interfaces are examined relative to the height of the entrainment zone. This study also systematically revealed the presence of turbulence above the local cloud top and/or above the entrainment zone. Wind shear near the cloud top is one possible source that generated local turbulence. Other potential sources of turbulence will also be discussed.

  9. The role of entrainment by falling raindrops in microbursts

    NASA Technical Reports Server (NTRS)

    Krueger, Steven K.

    1988-01-01

    The numerical model of Krueger et al. (1986) for dry microburst simulations is used to study the role of entrainment by falling raindrops. Two series of numerical simulations were conducted: a control series, and a series with the raindrop fall speed set to zero so that the rain moved with the air instead of falling through it. The results show that entrainment due to falling raindrops helps microbursts with large raindrop mixing ratios to form in stable stratifications. It is found that entrainment appears to contribute to the small spatial and temporal scales that characterize microburst outflows.

  10. Ancient Admixture in Human History

    PubMed Central

    Patterson, Nick; Moorjani, Priya; Luo, Yontao; Mallick, Swapan; Rohland, Nadin; Zhan, Yiping; Genschoreck, Teri; Webster, Teresa; Reich, David

    2012-01-01

    Population mixture is an important process in biology. We present a suite of methods for learning about population mixtures, implemented in a software package called ADMIXTOOLS, that support formal tests for whether mixture occurred and make it possible to infer proportions and dates of mixture. We also describe the development of a new single nucleotide polymorphism (SNP) array consisting of 629,433 sites with clearly documented ascertainment that was specifically designed for population genetic analyses and that we genotyped in 934 individuals from 53 diverse populations. To illustrate the methods, we give a number of examples that provide new insights about the history of human admixture. The most striking finding is a clear signal of admixture into northern Europe, with one ancestral population related to present-day Basques and Sardinians and the other related to present-day populations of northeast Asia and the Americas. This likely reflects a history of admixture between Neolithic migrants and the indigenous Mesolithic population of Europe, consistent with recent analyses of ancient bones from Sweden and the sequencing of the genome of the Tyrolean “Iceman.” PMID:22960212

  11. Ancient admixture in human history.

    PubMed

    Patterson, Nick; Moorjani, Priya; Luo, Yontao; Mallick, Swapan; Rohland, Nadin; Zhan, Yiping; Genschoreck, Teri; Webster, Teresa; Reich, David

    2012-11-01

    Population mixture is an important process in biology. We present a suite of methods for learning about population mixtures, implemented in a software package called ADMIXTOOLS, that support formal tests for whether mixture occurred and make it possible to infer proportions and dates of mixture. We also describe the development of a new single nucleotide polymorphism (SNP) array consisting of 629,433 sites with clearly documented ascertainment that was specifically designed for population genetic analyses and that we genotyped in 934 individuals from 53 diverse populations. To illustrate the methods, we give a number of examples that provide new insights about the history of human admixture. The most striking finding is a clear signal of admixture into northern Europe, with one ancestral population related to present-day Basques and Sardinians and the other related to present-day populations of northeast Asia and the Americas. This likely reflects a history of admixture between Neolithic migrants and the indigenous Mesolithic population of Europe, consistent with recent analyses of ancient bones from Sweden and the sequencing of the genome of the Tyrolean "Iceman."

  12. High-Resolution Entrainment in Stratocumulus During the POST Campaign

    NASA Astrophysics Data System (ADS)

    Gerber, H. E.

    2012-12-01

    In July and August of 2008 an NSF-supported field campaign called POST (Physics of Stratocumulus Top) was conducted off the California coast using the fully-instrumented Twin Otter aircraft from the Naval Post Graduate School. POST provided the first opportunity to closely co-locate on an aircraft high-rate and time synchronized microphysics (PVM; LWC and effective radius) and thermodynamics (UFT; Ultra-Fast Temperature) probes and a gust probe to produce measurements of entrainment fluxes and features over entrainment scales thought to be important in warm stratocumulus (Sc). This combination of probes permitted investigating the properties of individual entrained parcels Seventeen flights were conducted during POST in a quasi-Lagrangian fashion in largely unbroken stratocumulus. The horizontal fight path was adjusted to follow the mean air velocity in the Sc. The vertical flight path concentrated on flying between 100-m above and below the cloud-top interface; and some additional profiles were flown to various higher and lower levels where flux runs were made. This presentation describes the analysis of this unique and excellent data set including the following: The data permitted testing Lilly's classical theory for the entrainment velocity where its application requires strong jumps of temperature and moisture across the inversion located above cloud top, a linear flux of the entrained scalar below cloud top, and entrained parcels that descend. All flights showed Sc with wind shear and mixing at cloud top with some strong enough to dissipate the Sc. The relationship between shear and entrainment velocity is described. The pdf of the horizontal size of entrainment parcels vs entrainment flux is established for all flights to help in choosing grid-sizes for modeling. High -resolution in-cloud temperature and LWC measurements in entrained parcels reveal the relative importance of radiative cooling vs cooling by liquid water evaporation in causing buoyancy reversal

  13. Entraining synthetic genetic oscillators

    NASA Astrophysics Data System (ADS)

    Wagemakers, Alexandre; Buldú, Javier M.; Sanjuán, Miguel A. F.; de Luis, Oscar; Izquierdo, Adriana; Coloma, Antonio

    2009-09-01

    We propose a new approach for synchronizing a population of synthetic genetic oscillators, which consists in the entrainment of a colony of repressilators by external modulation. We present a model where the repressilator dynamics is affected by periodic changes in temperature. We introduce an additional plasmid in the bacteria in order to correlate the temperature variations with the enhancement of the transcription rate of a certain gene. This can be done by introducing a promoter that is related to the heat shock response. This way, the expression of that gene results in a protein that enhances the overall oscillations. Numerical results show coherent oscillations of the population for a certain range of the external frequency, which is in turn related to the natural oscillation frequency of the modified repressilator. Finally we study the transient times related with the loss of synchronization and we discuss possible applications in biotechnology of large-scale production coupled to synchronization events induced by heat shock.

  14. Power plant intake entrainment analysis

    SciTech Connect

    Edinger, J.E.; Kolluru, V.S.

    2000-04-01

    Power plant condenser cooling water intake entrainment of fish eggs and larvae is becoming an issue in evaluating environmental impacts around the plants. Methods are required to evaluate intake entrainment on different types of water bodies. Presented in this paper is a derivation of the basic relationships for evaluating entrainment from the standing crop of fish eggs and larvae for different regions of a water body, and evaluating the rate of entrainment from the standing crop. These relationships are coupled with a 3D hydrodynamic and transport model that provides the currents and flows required to complete the entrainment evaluation. Case examples are presented for a simple river system, and for the more complex Delaware River Estuary with multiple intakes. Example evaluations are made for individual intakes, and for the cumulative impacts of multiple intakes.

  15. Lidar measurements of the atmospheric entrainment zone and the potential temperature jump across the top of the mixed layer

    NASA Technical Reports Server (NTRS)

    Boers, R.; Eloranta, E. W.

    1986-01-01

    Lidar data of the atmospheric entrainment zone from six days of clear air convection obtained in central Illinois during July 1979 are presented. A new method to measure the potential temperature jump across the entrainment zone based on only one temperature sounding and continuous lidar measurements of the mixed layer height is developed. An almost linear dependence is found between the normalized entrainment rate and the normalized thickness of the entrainment zone.

  16. The Macroscopic Entrainment Processes of Simulated Cumulus Ensemble. Part II: Testing the Entraining-Plume Model.

    NASA Astrophysics Data System (ADS)

    Lin, Chichung; Arakawa, Akio

    1997-04-01

    According to Part I of this paper, it seems that ignoring the contribution from descendent cloud air in a cloud model for cumulus parameterization (CMCP), such as the spectral cumulus ensemble model in the Arakawa-Schubert parameterization, is an acceptable simplification for tropical deep convection. Since each subensemble in the spectral cumulus ensemble model is formally analogous to an entraining plume, the latter is examined using the simulated data from a cloud-resolving model (CRM). The authors first follow the analysis procedure of Warner. With the data from a nonprecipitating experiment, the authors show that the entraining-plume model cannot simultaneously predict the mean liquid water profile and cloud top height of the clouds simulated by the CRM. However, the mean properties of active elements of clouds, which are characterized by strong updrafts, can be described by an entraining plume of similar top height.With the data from a precipitating experiment, the authors examine the spectral cumulus ensemble model using the Paluch diagram. It is found that the spectral cumulus ensemble model appears adequate if different types of clouds in the spectrum are interpreted as subcloud elements with different entrainment characteristics. The resolved internal structure of clouds can thus be viewed as a manifestation of a cloud spectrum. To further investigate whether the fractional rate of entrainment is an appropriate parameter for characterizing cloud types in the spectral cumulus ensemble model, the authors stratify the simulated saturated updrafts (subcloud elements) into different types according to their eventual heights and calculate the cloud mass flux and mean moist static energy for each type. Entrainment characteristics are then inferred through the cloud mass flux and in-cloud moist static energy. It is found that different types of subcloud elements have distinguishable thermodynamic properties and entrainment characteristics. However, for each cloud

  17. The influence of Kr, CO2, and iso-C4H8 admixtures on the time of the formation of a stable flame front in mixtures of natural gas and isobutylene with oxygen and hydrogen with air under initiation with a spark discharge

    NASA Astrophysics Data System (ADS)

    Rubtsov, N. M.; Seplyarskii, B. S.; Chernysh, V. I.; Tsvetkov, G. I.

    2010-05-01

    High-speed color filming was used to study laminar spherical flame propagation at the initial stage in preliminarily mixed stoichiometric mixtures of natural gas and isobutylene with oxygen containing krypton and carbon dioxide and in hydrogen-air mixtures at atmospheric pressure in a bomb with a constant volume. Under experimental conditions ( T 0 = 298 K, p 0 = 100 torr, spark discharge energy E 0 = 0.91 J), the dilution of mixtures with Kr and CO2 increased the time of formation of a stable flame front by more than 10 times. The introduction of a small chemically active admixture (1.2% isobutylene) into a stoichiometric mixture of hydrogen and air sharply increased the time of formation of a stable flame front, which was evidence of an important role played by the chemical mechanism of the reaction in the formation of the combustion field.

  18. Investigating the Sensitivity of Model Intraseasonal Variability to Minimum Entrainment

    NASA Astrophysics Data System (ADS)

    Hannah, W. M.; Maloney, E. D.

    2008-12-01

    Previous studies have shown that using a Relaxed Arakawa-Schubert (RAS) convective parameterization with appropriate convective triggers and assumptions about rain re-evaporation produces realistic intraseasonal variability. RAS represents convection with an ensemble of clouds detraining at different heights, each with different entrainment rate, the highest clouds having the lowest entrainment rates. If tropospheric temperature gradients are weak and boundary layer moist static energy is relatively constant, then by limiting the minimum entrainment rate deep convection is suppressed in the presence of dry tropospheric air. This allows moist static energy to accumulate and be discharged during strong intraseasonal convective events, which is consistent with the discharge/recharge paradigm. This study will examine the sensitivity of intra-seasonal variability to changes in minimum entrainment rate in the NCAR-CAM3 with the RAS scheme. Simulations using several minimum entrainment rate thresholds will be investigated. A frequency-wavenumber analysis will show the improvement of the MJO signal as minimum entrainment rate is increased. The spatial and vertical structure of MJO-like disturbances will be examined, including an analysis of the time evolution of vertical humidity distribution for each simulation. Simulated results will be compared to observed MJO events in NCEP-1 reanalysis and CMAP precipitation.

  19. Entrainment Rates in POST Stratocumulus

    NASA Astrophysics Data System (ADS)

    Gerber, H. E.; Frick, G.

    2010-12-01

    A recent field study (POST; Physics of Stratocumulus top; July-Aug., 2008) off the California Coast used the CIRPAS Twin Otter aircraft to observe mostly unbroken stratocumulus clouds (Sc). Seventeen flights were made in a quasi-Lagrangian horizontal pattern and in a vertical profiling pattern +/- 100 m about Sc top that was repeated numerous times. The aircraft carried a full complement of probes, including the high rate (1000-hz) UFT (ultra-fast temperature) and PVM (LWC and effective radius) probes both of which provided data within cloud and were located near the aircraft’s gust probe. The latter two probes were used to estimate the entrainment velocity (we) into the Sc using the “conditional sampling” approach. The range of we values fall within previous estimates of we, and examples of the measurements are presented. This we data set provides new insight on the entrainment process with findings including the following: About on half the POST flights the Sc showed entrainment behavior unlike that expected from previous applications of the “conditional sampling” method. Higher wind speeds and shear near Sc top generated significant turbulence both above and below the cloud-top interface causing the linear entrainment flux approximation near Sc top to be invalid. This behavior would also affect the “flux-jump” method used previously for estimating we., leading to questions about the validity of previous we measurements. In addition the required sharp jump at the interface of the entrainment scalar was not present in some cases. The “conditional sampling” method yields pdfs of the entrainment parcel length which are variable depending on the flight. The lengths are sufficiently large in some cases and are compatible with practical LES grid spacing suggesting a LES modeling and measurement comparison, where the more robust measurement is the entrainment flux into the POST Sc rather than the estimate of we.

  20. Entrainment in interacting vortex rings

    NASA Astrophysics Data System (ADS)

    Shami, Rammah; Ganapathisubramani, Bharathram

    2014-11-01

    The efficiency of entrainment in single vortex rings has been examined by various studies in the literature. These studies have shown that this efficiency is greatly increased for smaller stroke-time to nozzle-diameter ratios, L/D. However, no clear consensus exists regarding the effect on the entrainment process for the sectioned delivery of the vortex forming impulse. In the present work the entrainment mechanism associated with the interaction between two co-axially separated vortex rings is explored. Planar, time-resolved particle image velocimetry (PIV) measurements are taken of a interacting vortex flow field. Lagrangian coherent structures (LCS) extracted from the finite-time Lyapunov exponent (FTLE) fields are employed to determine the vortex boundaries of the interacting rings and is then used to measure entrainment. Preliminary results indicate that whilst the most efficient entrainment of ambient fluid by the ring pairs occurs at larger separations, the rate and overall mass transport increase can be controlled by altering the spatial/temporal separation between successive rings and is higher at smaller ring spacing. Variation in mass transport behaviour for different ring strengths (L/D) and Reynolds numbers will also be discussed.

  1. Estimation of convective entrainment properties from a cloud-resolving model simulation during TWP-ICE

    NASA Astrophysics Data System (ADS)

    Zhang, Guang J.; Wu, Xiaoqing; Zeng, Xiping; Mitovski, Toni

    2015-12-01

    The fractional entrainment rate in convective clouds is an important parameter in current convective parameterization schemes of climate models. In this paper, it is estimated using a 1-km-resolution cloud-resolving model (CRM) simulation of convective clouds from TWP-ICE (the Tropical Warm Pool-International Cloud Experiment). The clouds are divided into different types, characterized by cloud-top heights. The entrainment rates and moist static energy that is entrained or detrained are determined by analyzing the budget of moist static energy for each cloud type. Results show that the entrained air is a mixture of approximately equal amount of cloud air and environmental air, and the detrained air is a mixture of ~80 % of cloud air and 20 % of the air with saturation moist static energy at the environmental temperature. After taking into account the difference in moist static energy between the entrained air and the mean environment, the estimated fractional entrainment rate is much larger than those used in current convective parameterization schemes. High-resolution (100 m) large-eddy simulation of TWP-ICE convection was also analyzed to support the CRM results. It is shown that the characteristics of entrainment rates estimated using both the high-resolution data and CRM-resolution coarse-grained data are similar. For each cloud category, the entrainment rate is high near cloud base and top, but low in the middle of clouds. The entrainment rates are best fitted to the inverse of in-cloud vertical velocity by a second order polynomial.

  2. Estimation of convective entrainment properties from a cloud-resolving model simulation during TWP-ICE

    NASA Astrophysics Data System (ADS)

    Zhang, Guang J.; Wu, Xiaoqing; Zeng, Xiping; Mitovski, Toni

    2016-10-01

    The fractional entrainment rate in convective clouds is an important parameter in current convective parameterization schemes of climate models. In this paper, it is estimated using a 1-km-resolution cloud-resolving model (CRM) simulation of convective clouds from TWP-ICE (the Tropical Warm Pool-International Cloud Experiment). The clouds are divided into different types, characterized by cloud-top heights. The entrainment rates and moist static energy that is entrained or detrained are determined by analyzing the budget of moist static energy for each cloud type. Results show that the entrained air is a mixture of approximately equal amount of cloud air and environmental air, and the detrained air is a mixture of ~80 % of cloud air and 20 % of the air with saturation moist static energy at the environmental temperature. After taking into account the difference in moist static energy between the entrained air and the mean environment, the estimated fractional entrainment rate is much larger than those used in current convective parameterization schemes. High-resolution (100 m) large-eddy simulation of TWP-ICE convection was also analyzed to support the CRM results. It is shown that the characteristics of entrainment rates estimated using both the high-resolution data and CRM-resolution coarse-grained data are similar. For each cloud category, the entrainment rate is high near cloud base and top, but low in the middle of clouds. The entrainment rates are best fitted to the inverse of in-cloud vertical velocity by a second order polynomial.

  3. Wind profiler mixing depth and entrainment measurements with chemical applications

    SciTech Connect

    Angevine, W.M.; Trainer, M.; Parrish, D.D.; Buhr, M.P.; Fehsenfeld, F.C.; Kok, G.L.

    1994-12-31

    Wind profiling radars operating at 915 MHz have been present at a number of regional air quality studies. The profilers can provide a continuous, accurate record of the depth of the convective mixed layer with good time resolution. Profilers also provide information about entrainment at the boundary layer top. Mixing depth data from several days of the Rural Oxidants in the Southern Environment II (ROSE II) study in Alabama in June, 1992 are presented. For several cases, chemical measurements from aircraft and ground-based instruments are shown to correspond to mixing depth and entrainment zone behavior observed by the profiler.

  4. Timescales of massive human entrainment.

    PubMed

    Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

    2015-01-01

    The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment--as expressed by the content and patterns of hundreds of thousands of messages on Twitter--during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5-10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment. PMID:25880357

  5. Timescales of massive human entrainment.

    PubMed

    Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

    2015-01-01

    The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment--as expressed by the content and patterns of hundreds of thousands of messages on Twitter--during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5-10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment.

  6. Timescales of Massive Human Entrainment

    PubMed Central

    Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

    2015-01-01

    The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment—as expressed by the content and patterns of hundreds of thousands of messages on Twitter—during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5–10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment. PMID:25880357

  7. Scale dependence of entrainment-mixing mechanisms in cumulus clouds

    DOE PAGES

    Lu, Chunsong; Liu, Yangang; Niu, Shengjie; Endo, Satoshi

    2014-12-17

    This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasingmore » scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.« less

  8. Scale dependence of entrainment-mixing mechanisms in cumulus clouds

    SciTech Connect

    Lu, Chunsong; Liu, Yangang; Niu, Shengjie; Endo, Satoshi

    2014-12-17

    This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasing scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.

  9. The Entrainment Interface Layer of Stratocumulus-topped Boundary Layers

    NASA Astrophysics Data System (ADS)

    Krueger, S.; Hill, S.

    2010-09-01

    The entrainment interface layer (EIL) is the layer between cloud top and the free atmosphere. It contains mixtures of air from the cloud layer and the free atmosphere. In addition to turbulent mixing, phase changes and radiative heating or ccoling also affect the thermodynamic properties of air in the EIL. Eventually, air from the EIL is entrained into the cloud layer. How do processes in the EIL affect the entrainment rate? What is the structure of the EIL? Is cloud-top an interface (a region of high gradients), or simply an iso-surface? We are using airborne measuurements taken in the EIL during POST (Physics of Stratocumulus Top), which took place during July and August 2008 near Monterey, California, USA, to address these questions. High-rate measurements of temperature and liquid water content made just 0.5 m apart allow us to perform a high-resolution analysis of a conserved variable (liquid water potential temperature). When combined with lower-rate measurements of water vapor, they also allow us to perform a mixture fraction analysis following vanZanten and Duynkerke (2002).

  10. Crustal entrainment and pulsar glitches.

    PubMed

    Chamel, N

    2013-01-01

    Large pulsar frequency glitches are generally interpreted as sudden transfers of angular momentum between the neutron superfluid permeating the inner crust and the rest of the star. Despite the absence of viscous drag, the neutron superfluid is strongly coupled to the crust due to nondissipative entrainment effects. These effects are shown to severely limit the maximum amount of angular momentum that can possibly be transferred during glitches. In particular, it is found that the glitches observed in the Vela pulsar require an additional reservoir of angular momentum.

  11. Crustal entrainment and pulsar glitches.

    PubMed

    Chamel, N

    2013-01-01

    Large pulsar frequency glitches are generally interpreted as sudden transfers of angular momentum between the neutron superfluid permeating the inner crust and the rest of the star. Despite the absence of viscous drag, the neutron superfluid is strongly coupled to the crust due to nondissipative entrainment effects. These effects are shown to severely limit the maximum amount of angular momentum that can possibly be transferred during glitches. In particular, it is found that the glitches observed in the Vela pulsar require an additional reservoir of angular momentum. PMID:23383772

  12. Phase sensitivity analysis of circadian rhythm entrainment.

    PubMed

    Gunawan, Rudiyanto; Doyle, Francis J

    2007-04-01

    As a biological clock, circadian rhythms evolve to accomplish a stable (robust) entrainment to environmental cycles, of which light is the most obvious. The mechanism of photic entrainment is not known, but two models of entrainment have been proposed based on whether light has a continuous (parametric) or discrete (nonparametric) effect on the circadian pacemaker. A novel sensitivity analysis is developed to study the circadian entrainment in silico based on a limit cycle approach and applied to a model of Drosophila circadian rhythm. The comparative analyses of complete and skeleton photoperiods suggest a trade-off between the contribution of period modulation (parametric effect) and phase shift (nonparametric effect) in Drosophila circadian entrainment. The results also give suggestions for an experimental study to (in)validate the two models of entrainment.

  13. Fluid dynamics of pressurized, entrained coal gasifiers. Technical progress report, April 1, 1995--June 30, 1995

    SciTech Connect

    Louge, M.Y.

    1995-10-01

    A study of the fluid dynamics of Pressurized Entrained Coal Gasifiers (PECGs) is being conducted. The idea is to simulate the flows in generic industrial PECGs using dimensional simulitude. A unique entrained gas-solid flow facility with the flexibility to recycle rather than discard gases other than air has been utilized. By matching five dimensionaless parameters, suspensions in mixtures of helium, carbon dioxide and sulfur hexafluoride simulate the effects of pressure and scale-up on the fluid dynamics of PECGs.

  14. Partial entrainment of gravel bars during floods

    USGS Publications Warehouse

    Konrad, C.P.; Booth, D.B.; Burges, S.J.; Montgomery, D.R.

    2002-01-01

    Spatial patterns of bed material entrainment by floods were documented at seven gravel bars using arrays of metal washers (bed tags) placed in the streambed. The observed patterns were used to test a general stochastic model that bed material entrainment is a spatially independent, random process where the probability of entrainment is uniform over a gravel bar and a function of the peak dimensionless shear stress ??*0 of the flood. The fraction of tags missing from a gravel bar during a flood, or partial entrainment, had an approximately normal distribution with respect to ??*0 with a mean value (50% of the tags entrained) of 0.085 and standard deviation of 0.022 (root-mean-square error of 0.09). Variation in partial entrainment for a given ??*0 demonstrated the effects of flow conditioning on bed strength, with lower values of partial entrainment after intermediate magnitude floods (0.065 < ??*0 < 0.08) than after higher magnitude floods. Although the probability of bed material entrainment was approximately uniform over a gravel bar during individual floods and independent from flood to flood, regions of preferential stability and instability emerged at some bars over the course of a wet season. Deviations from spatially uniform and independent bed material entrainment were most pronounced for reaches with varied flow and in consecutive floods with small to intermediate magnitudes.

  15. Optimal entrainment of heterogeneous noisy neurons

    PubMed Central

    Wilson, Dan; Holt, Abbey B.; Netoff, Theoden I.; Moehlis, Jeff

    2015-01-01

    We develop a methodology to design a stimulus optimized to entrain nonlinear, noisy limit cycle oscillators with uncertain properties. Conditions are derived which guarantee that the stimulus will entrain the oscillators despite these uncertainties. Using these conditions, we develop an energy optimal control strategy to design an efficient entraining stimulus and apply it to numerical models of noisy phase oscillators and to in vitro hippocampal neurons. In both instances, the optimal stimuli outperform other similar but suboptimal entraining stimuli. Because this control strategy explicitly accounts for both noise and inherent uncertainty of model parameters, it could have experimental relevance to neural circuits where robust spike timing plays an important role. PMID:26074762

  16. Heterogeneity in Genetic Admixture across Different Regions of Argentina

    PubMed Central

    Avena, Sergio; Via, Marc; Ziv, Elad; Pérez-Stable, Eliseo J.; Gignoux, Christopher R.; Dejean, Cristina; Huntsman, Scott; Torres-Mejía, Gabriela; Dutil, Julie; Matta, Jaime L.; Beckman, Kenneth; Burchard, Esteban González; Parolin, María Laura; Goicoechea, Alicia; Acreche, Noemí; Boquet, Mariel; Ríos Part, María Del Carmen; Fernández, Vanesa; Rey, Jorge; Stern, Mariana C.; Carnese, Raúl F.; Fejerman, Laura

    2012-01-01

    The population of Argentina is the result of the intermixing between several groups, including Indigenous American, European and African populations. Despite the commonly held idea that the population of Argentina is of mostly European origin, multiple studies have shown that this process of admixture had an impact in the entire Argentine population. In the present study we characterized the distribution of Indigenous American, European and African ancestry among individuals from different regions of Argentina and evaluated the level of discrepancy between self-reported grandparental origin and genetic ancestry estimates. A set of 99 autosomal ancestry informative markers (AIMs) was genotyped in a sample of 441 Argentine individuals to estimate genetic ancestry. We used non-parametric tests to evaluate statistical significance. The average ancestry for the Argentine sample overall was 65% European (95%CI: 63–68%), 31% Indigenous American (28–33%) and 4% African (3–4%). We observed statistically significant differences in European ancestry across Argentine regions [Buenos Aires province (BA) 76%, 95%CI: 73–79%; Northeast (NEA) 54%, 95%CI: 49–58%; Northwest (NWA) 33%, 95%CI: 21–41%; South 54%, 95%CI: 49–59%; p<0.0001] as well as between the capital and immediate suburbs of Buenos Aires city compared to more distant suburbs [80% (95%CI: 75–86%) versus 68% (95%CI: 58–77%), p = 0.01]. European ancestry among individuals that declared all grandparents born in Europe was 91% (95%CI: 88–94%) compared to 54% (95%CI: 51–57%) among those with no European grandparents (p<0.001). Our results demonstrate the range of variation in genetic ancestry among Argentine individuals from different regions in the country, highlighting the importance of taking this variation into account in genetic association and admixture mapping studies in this population. PMID:22506044

  17. A genetic atlas of human admixture history

    PubMed Central

    Hellenthal, Garrett; Busby, George B.J.; Band, Gavin; Wilson, James F.; Capelli, Cristian

    2014-01-01

    Modern genetic data combined with appropriate statistical methods have the potential to contribute substantially to our understanding of human history. We have developed an approach that exploits the genomic structure of admixed populations to date and characterize historical mixture events at fine scales. We used this to produce an atlas of worldwide human admixture history, constructed using genetic data alone and encompassing over 100 events occurring over the past 4,000 years. We identify events whose dates and participants suggest they describe genetic impacts of the Mongol Empire, Arab slave trade, Bantu expansion, first millennium CE migrations in eastern Europe, and European colonialism, as well as unrecorded events, revealing admixture to be an almost universal force shaping human populations. PMID:24531965

  18. Admixture in Hispanic Americans: its impact on ITGAM association and implications for admixture mapping in SLE.

    PubMed

    Molineros, J E; Kim-Howard, X; Deshmukh, H; Jacob, C O; Harley, J B; Nath, S K

    2009-07-01

    Systemic Lupus Erythematosus (SLE) disproportionately affects minorities, such as Hispanic Americans (HA). Prevalence of SLE is 3-5 times higher in HA than in European-derived populations and have more active disease at the time of diagnosis, with more serious organ system involvement. HA is an admixed population, it is possible that there is an effect of admixture on the relative risk of the disease. This admixture can create substantial increase of linkage disequilibrium (LD) in both magnitude and range, which can provide a unique opportunity for admixture mapping. The main objectives of this study are to (a) estimate hidden population structure in HA individuals; (b) estimate individual ancestry proportions and its impact on SLE risk; (c) assess impact of admixture on ITGAM association, a recently identified SLE susceptibility gene; and (d) estimate power of admixture mapping in HA. Our dataset contained 1125 individuals, of whom 884 (657 SLE cases and 227 controls) were self-classified as HA. Using 107 unlinked ancestry informative markers (AIMs), we estimated hidden population structure and individual ancestry in HA. Out of 5671 possible pairwise LD, 54% were statistically significant, indicating recent population admixture. The best-fitted model for HA was a four-population model with average ancestry of European (48%), American-Indian (AI) (40%), African (8%) and a fourth population (4%) with unknown ancestry. We also identified significant higher risk associated with AI ancestry (odds ratio (OR)=4.84, P=0.0001, 95% CI (confidence interval)=2.14-10.95) on overall SLE. We showed that ITGAM is associated as a risk factor for SLE (OR=2.06, P=8.74 x 10(-5), 95% CI=1.44-2.97). This association is not affected by population substructure or admixture. We have shown that HA have great potential and are an appropriate population for admixture mapping. As expected, the case-only design is more powerful than case-control design, for any given admixture proportion or

  19. Entrainment instability and vertical motion as causes of stratocumulus breakup

    NASA Technical Reports Server (NTRS)

    Weaver, C. J.; Pearson, R., Jr.

    1990-01-01

    Entrainment instability is thought to be a cause of stratocumulus breakup. At the interface between the cloud and the overlying air, mixtures may form which are negatively buoyant because of cloud droplet evaporation. Quantities devised to predict breakup are obtained from aircraft observations and are tested against cloud observations from satellite. Often, the parameters indicate that breakup should occur but the clouds remain, sometimes for several days. One possible explanation for breakup is vertical motion from passing synoptic cyclones. Several cases suggest that breakup is associated with the downward vertical motion from the cold air advected behind an eastward moving cyclone.

  20. A Genomewide Admixture Map for Latino Populations

    PubMed Central

    Price, Alkes L. ; Patterson, Nick ; Yu, Fuli ; Cox, David R. ; Waliszewska, Alicja ; McDonald, Gavin J. ; Tandon, Arti ; Schirmer, Christine ; Neubauer, Julie ; Bedoya, Gabriel ; Duque, Constanza ; Villegas, Alberto ; Bortolini, Maria Catira ; Salzano, Francisco M. ; Gallo, Carla ; Mazzotti, Guido ; Tello-Ruiz, Marcela ; Riba, Laura ; Aguilar-Salinas, Carlos A. ; Canizales-Quinteros, Samuel ; Menjivar, Marta ; Klitz, William ; Henderson, Brian ; Haiman, Christopher A. ; Winkler, Cheryl ; Tusie-Luna, Teresa ; Ruiz-Linares, Andrés ; Reich, David 

    2007-01-01

    Admixture mapping is an economical and powerful approach for localizing disease genes in populations of recently mixed ancestry and has proven successful in African Americans. The method holds equal promise for Latinos, who typically inherit a mix of European, Native American, and African ancestry. However, admixture mapping in Latinos has not been practical because of the lack of a map of ancestry-informative markers validated in Native American and other populations. To address this, we screened multiple databases, containing millions of markers, to identify 4,186 markers that were putatively informative for determining the ancestry of chromosomal segments in Latino populations. We experimentally validated each of these markers in at least 232 new Latino, European, Native American, and African samples, and we selected a subset of 1,649 markers to form an admixture map. An advantage of our strategy is that we focused our map on markers distinguishing Native American from other ancestries and restricted it to markers with very similar frequencies in Europeans and Africans, which decreased the number of markers needed and minimized the possibility of false disease associations. We evaluated the effectiveness of our map for localizing disease genes in four Latino populations from both North and South America. PMID:17503322

  1. Quantifying entrainment in pyroclastic density currents from the Tungurahua eruption, Ecuador: Integrating field proxies with numerical simulations

    NASA Astrophysics Data System (ADS)

    Benage, M. C.; Dufek, J.; Mothes, P. A.

    2016-07-01

    The entrainment of air into pyroclastic density currents (PDCs) impacts the dynamics and thermal history of these highly mobile currents. However, direct measurement of entrainment in PDCs is hampered due to hazardous conditions and opaqueness of these flows. We combine three-dimensional multiphase Eulerian-Eulerian-Lagrangian calculations with proxies of thermal conditions preserved in deposits to quantify air entrainment in PDCs at Tungurahua volcano, Ecuador. We conclude that small-volume PDCs develop a particle concentration gradient that results in disparate thermal characteristics for the concentrated bed load (>600 to ~800 K) and the overlying dilute suspended load (~300-600 K). The dilute suspended load has effective entrainment coefficients 2-3 times larger than the bed load. This investigation reveals a dichotomy in entrainment and thermal history between two regions in the current and provides a mechanism to interpret the depositional thermal characteristics of small-volume but frequently occurring PDCs.

  2. Observational constraints on entrainment in stratocumulus

    NASA Astrophysics Data System (ADS)

    Chuang, P. Y.; Carman, J. K.; Rossiter, D. L.; Khelif, D.; Jonsson, H.; Faloona, I. C.

    2012-12-01

    Aircraft sampling of the stratocumulus-topped boundary layer (STBL) during the Physics of Stratocumulus Top (POST) experiment was primarily achieved using sawtooth flight patterns, during which the atmospheric layer 100 m above and below cloud top was sampled at a frequency of once every 2 min. The large data set that resulted from each of the 16 flights document the complex vertical structure and variability of this interfacial region. In this study, we utilize the POST data to shed light on and constrain processes relevant to entrainment. We define "entrainment efficiency" as the ratio of the turbulent kinetic energy consumed by entrainment to that generated within the STBL (primarily by cloud-top cooling). We find values for the entrainment efficiency that vary by 1.5 orders of magnitude, which is even greater than the one order-of-magnitude that previous modeling results have suggested. Our analysis also demonstrates that the entrainment efficiency depends on the strength of the stratification across the entrainment interface layer, but not on the strength of turbulence in the cloud top region. The relationships between entrainment efficiency and other STBL parameters serve as novel observational contraints for simulations of entrainment in such systems.

  3. The entrainment rate for a row of turbulent jets. M.S. Thesis Final Report

    NASA Technical Reports Server (NTRS)

    Gordon, Eliott B.; Greber, Isaac

    1990-01-01

    Entrainment rates for a row of isothermal circular air jets issuing into a quiescent environment are found by integrating velocity distributions measured by a linearized hot-wire anemometer. Jet spacing to jet diameter ratios of 2.5, 5, 10, and 20 are studied at jet Reynold's numbers ranging from 5110 to 12070. Velocity distributions are determined at regular downstream intervals at axial distances equal to 16.4 to 164 jet diameters from the jet source. The entrainment rates for the four spacing configurations vary monotonically with increasing spacing/diameter between the limiting case of the slot jet entrainment rate (where the jet spacing to diameter ratio is zero) and the circular jet entrainment rate (in which the spacing to diameter ratio is infinity).

  4. Air

    MedlinePlus

    ... do to protect yourself from dirty air . Indoor air pollution and outdoor air pollution Air can be polluted indoors and it can ... this chart to see what things cause indoor air pollution and what things cause outdoor air pollution! Indoor ...

  5. Temperature compensation and entrainment in circadian rhythms

    NASA Astrophysics Data System (ADS)

    Bodenstein, C.; Heiland, I.; Schuster, S.

    2012-06-01

    To anticipate daily variations in the environment and coordinate biological activities into a daily cycle many organisms possess a circadian clock. In the absence of external time cues the circadian rhythm persists with a period of approximately 24 h. The clock phase can be shifted by single pulses of light, darkness, chemicals, or temperature and this allows entrainment of the clock to exactly 24 h by cycles of these zeitgebers. On the other hand, the period of the circadian rhythm is kept relatively constant within a physiological range of constant temperatures, which means that the oscillator is temperature compensated. The mechanisms behind temperature compensation and temperature entrainment are not fully understood, neither biochemically nor mathematically. Here, we theoretically investigate the interplay of temperature compensation and entrainment in general oscillatory systems. We first give an analytical treatment for small temperature shifts and derive that every temperature-compensated oscillator is entrainable to external small-amplitude temperature cycles. Temperature compensation ensures that this entrainment region is always centered at the endogenous period regardless of possible seasonal temperature differences. Moreover, for small temperature cycles the entrainment region of the oscillator is potentially larger for rectangular pulses. For large temperature shifts we numerically analyze different circadian clock models proposed in the literature with respect to these properties. We observe that for such large temperature shifts sinusoidal or gradual temperature cycles allow a larger entrainment region than rectangular cycles.

  6. Process of entrainment in particulate gravity currents

    NASA Astrophysics Data System (ADS)

    Shringarpure, Mrugesh; Salinas, Jorge; Cantero, Mariano; Balachandar, S.

    2014-11-01

    Various geophysical flows like turbidity currents, river flows, dust storms etc transport huge quantities of dispersed phase over large distances. Typically in such flows a dispersed phase rich layer is swept along with the flow. The amount of dispersed phase carried depends on the dynamics of this layer which are governed by a strong coupling between turbulence and suspended particles. This layer evolves, i.e., grows/shrinks in size, due to entrainment/detrainment of surrounding clear fluid at its interface (where a sharp change from particle rich fluid to surrounding clear fluid occurs). Also in many applications there is entrainment and detainment of particles at the bottom boundary due to settling and resuspension. The entrainment processes that occur here have important consequences. Consistent entrainment means the flow is energetic enough to mix/distribute the dispersed phase layer in the bulk flow. To study these processes, we introduce a layer of suspended particles into a fully turbulent channel flow and capture the entrainment processes in detail. Three parameters - Reynolds number, particle size and Richardson number dictate the entrainment process. Various simulations have been performed that explores this parametric space and identifies various entrainment regimes. We acknowledge support from US NSF through Grant OISE 0968313 and OCE 1131016.

  7. Entrainment rates and microphysics in POST stratocumulus

    NASA Astrophysics Data System (ADS)

    Gerber, H.; Frick, G.; Malinowski, Szymon P.; Jonsson, H.; Khelif, D.; Krueger, Steven K.

    2013-11-01

    An aircraft field study (POST; Physics of Stratocumulus Top) was conducted off the central California coast in July and August 2008 to deal with the known difficulty of measuring entrainment rates in the radiatively important stratocumulus (Sc) prevalent in that area. The Center for Interdisciplinary Remotely-Piloted Aircraft Studies Twin Otter research aircraft flew 15 quasi-Lagrangian flights in unbroken Sc and carried a full complement of probes including three high-data-rate probes: ultrafast temperature probe, particulate volume monitor probe, and gust probe. The probes' colocation near the nose of the Twin Otter permitted estimation of entrainment fluxes and rates with an in-cloud resolution of 1 m. Results include the following: Application of the conditional sampling variation of classical mixed layer theory for calculating the entrainment rate into cloud top for POST flights is shown to be inadequate for most of the Sc. Estimated rates resemble previous results after theory is modified to take into account both entrainment and evaporation at cloud top given the strong wind shear and mixing at cloud top. Entrainment rates show a tendency to decrease for large shear values, and the largest rates are for the smallest temperature jumps across the inversion. Measurements indirectly suggest that entrained parcels are primarily cooled by infrared flux divergence rather than cooling from droplet evaporation, while detrainment at cloud top causes droplet evaporation and cooling in the entrainment interface layer above cloud top.

  8. Turbulent diffusion of chemically reacting gaseous admixtures

    NASA Astrophysics Data System (ADS)

    Elperin, T.; Kleeorin, N.; Liberman, M.; Rogachevskii, I.

    2014-11-01

    We study turbulent diffusion of chemically reacting gaseous admixtures in a developed turbulence. In our previous study [Phys. Rev. Lett. 80, 69 (1998), 10.1103/PhysRevLett.80.69] using a path-integral approach for a delta-correlated in a time random velocity field, we demonstrated a strong modification of turbulent transport in fluid flows with chemical reactions or phase transitions. In the present study we use the spectral τ approximation that is valid for large Reynolds and Peclet numbers and show that turbulent diffusion of the reacting species can be strongly depleted by a large factor that is the ratio of turbulent and chemical times (turbulent Damköhler number). We have demonstrated that the derived theoretical dependence of a turbulent diffusion coefficient versus the turbulent Damköhler number is in good agreement with that obtained previously in the numerical modeling of a reactive front propagating in a turbulent flow and described by the Kolmogorov-Petrovskii-Piskunov-Fisher equation. We have found that turbulent cross-effects, e.g., turbulent mutual diffusion of gaseous admixtures and turbulent Dufour effect of the chemically reacting gaseous admixtures, are less sensitive to the values of stoichiometric coefficients. The mechanisms of the turbulent cross-effects differ from the molecular cross-effects known in irreversible thermodynamics. In a fully developed turbulence and at large Peclet numbers the turbulent cross-effects are much larger than the molecular ones. The obtained results are applicable also to heterogeneous phase transitions.

  9. A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 1; Model Development

    NASA Technical Reports Server (NTRS)

    Cohen, Charles

    1998-01-01

    A method is developed which uses numerical tracers to make accurate diagnoses of entraimnent and detrainment rates and of the properties of the entrained and detrained air in numerically simulated clouds. The numerical advection scheme is modified to make it nondispersive, as required by the use of the tracers. Tests of the new method are made, and an appropriate definition of clouds is selected. Distributions of mixing fractions in the model consistently show maximums at the end points, for nearly undilute environmental air or nearly undilute cloud air, with a uniform distribution between. The cumulonimbus clouds simulated here entrain air that had been substantially changed by the clouds, and detrained air that is not necessarily representative of the cloud air at the same level.

  10. Admixture, Population Structure, and F-Statistics.

    PubMed

    Peter, Benjamin M

    2016-04-01

    Many questions about human genetic history can be addressed by examining the patterns of shared genetic variation between sets of populations. A useful methodological framework for this purpose isF-statistics that measure shared genetic drift between sets of two, three, and four populations and can be used to test simple and complex hypotheses about admixture between populations. This article provides context from phylogenetic and population genetic theory. I review how F-statistics can be interpreted as branch lengths or paths and derive new interpretations, using coalescent theory. I further show that the admixture tests can be interpreted as testing general properties of phylogenies, allowing extension of some ideas applications to arbitrary phylogenetic trees. The new results are used to investigate the behavior of the statistics under different models of population structure and show how population substructure complicates inference. The results lead to simplified estimators in many cases, and I recommend to replace F3 with the average number of pairwise differences for estimating population divergence.

  11. Overfill of common piggyback admixture solutions.

    PubMed

    Kleinberg, M L; Chang, P

    1984-10-01

    The average final volume of 23 commonly used piggyback solutions was determined. Polyvinyl chloride (PVC) containers filled with 0.9% sodium chloride injection or 5% dextrose injection in 50 ml and 100 ml sizes were used for 20 of the piggybacks. A total of ten samples of each drug and dose were measured by draining the entire contents into a graduated cylinder and measuring the volume. The mean volumes, standard deviations, and ranges for each drug and dose were calculated. The volume found in each sample exceeded the volume in the original PVC container by at least 20% in the 50 ml size and 11% in the 100 ml size. The greatest percentage volume difference was 62% in the 50 ml size and 28% in the 100 ml size. The FasPak and the two Viaflex Plus Ready-To-Use containers, which did not require the use of the 50 and 100 ml PVC containers, had a percentage volume difference of 2.6%, 2.2%, and 3.4%, respectively. This information demonstrates the fact that the final volumes of some piggyback admixtures are significantly greater than that which may be presumed from the admixture label. PMID:10268316

  12. Washing of the AN-107 entrained solids

    SciTech Connect

    GJ Lumetta; FV Hoopes

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the effects of inhibited water washing on the composition of the entrained solids in the diluted AN-107 low-activity waste (LAW) sample. The objective of this work was to gather data on the solubility of the AN-107 entrained solids in 0.01 M NaOH, so that BNFL can evaluate whether these solids require caustic leaching.

  13. Coupling governs entrainment range of circadian clocks

    PubMed Central

    Abraham, Ute; Granada, Adrián E; Westermark, Pål O; Heine, Markus; Kramer, Achim; Herzel, Hanspeter

    2010-01-01

    Circadian clocks are endogenous oscillators driving daily rhythms in physiology and behavior. Synchronization of these timers to environmental light–dark cycles (‘entrainment') is crucial for an organism's fitness. Little is known about which oscillator qualities determine entrainment, i.e., entrainment range, phase and amplitude. In a systematic theoretical and experimental study, we uncovered these qualities for circadian oscillators in the suprachiasmatic nucleus (SCN—the master clock in mammals) and the lung (a peripheral clock): (i) the ratio between stimulus (zeitgeber) strength and oscillator amplitude and (ii) the rigidity of the oscillatory system (relaxation rate upon perturbation) determine entrainment properties. Coupling among oscillators affects both qualities resulting in increased amplitude and rigidity. These principles explain our experimental findings that lung clocks entrain to extreme zeitgeber cycles, whereas SCN clocks do not. We confirmed our theoretical predictions by showing that pharmacological inhibition of coupling in the SCN leads to larger ranges of entrainment. These differences between master and the peripheral clocks suggest that coupling-induced rigidity in the SCN filters environmental noise to create a robust circadian system. PMID:21119632

  14. Tuning the phase of circadian entrainment

    PubMed Central

    Bordyugov, Grigory; Abraham, Ute; Granada, Adrian; Rose, Pia; Imkeller, Katharina; Kramer, Achim; Herzel, Hanspeter

    2015-01-01

    The circadian clock coordinates daily physiological, metabolic and behavioural rhythms. These endogenous oscillations are synchronized with external cues (‘zeitgebers’), such as daily light and temperature cycles. When the circadian clock is entrained by a zeitgeber, the phase difference ψ between the phase of a clock-controlled rhythm and the phase of the zeitgeber is of fundamental importance for the fitness of the organism. The phase of entrainment ψ depends on the mismatch between the intrinsic period τ and the zeitgeber period T and on the ratio of the zeitgeber strength to oscillator amplitude. Motivated by the intriguing complexity of empirical data and by our own experiments on temperature entrainment of mouse suprachiasmatic nucleus (SCN) slices, we present a theory on how clock and zeitgeber properties determine the phase of entrainment. The wide applicability of the theory is demonstrated using mathematical models of different complexity as well as by experimental data. Predictions of the theory are confirmed by published data on Neurospora crassa strains for different period mismatches τ − T and varying photoperiods. We apply a novel regression technique to analyse entrainment of SCN slices by temperature cycles. We find that mathematical models can explain not only the stable asymptotic phase of entrainment, but also transient phase dynamics. Our theory provides the potential to explore seasonal variations of circadian rhythms, jet lag and shift work in forthcoming studies. PMID:26136227

  15. Informational Constraints on Spontaneous Visuomotor Entrainment

    PubMed Central

    Varlet, Manuel; Bucci, Colleen; Richardson, Michael J.; Schmidt, R. C.

    2015-01-01

    Past research has revealed that an individual's rhythmic limb movements become spontaneously entrained to an environmental rhythm if visual information about the rhythm is available and its frequency is near that of the individual's movements. Research has also demonstrated that if the eyes track an environmental stimulus, the spontaneous entrainment to the rhythm is strengthened. One hypothesis explaining this enhancement of spontaneous entrainment is that the limb movements and eye movements are linked through a neuromuscular coupling or synergy. Another is that eye-tracking facilitates the pick up of important coordinating information. Experiment 1 investigated the first hypothesis by evaluating whether any rhythmic movement of the eyes would facilitate spontaneous entrainment. Experiment 2 and 3 (respectively) explored whether eye-tracking strengthens spontaneous entrainment by allowing the pickup of trajectory direction change information or allowing an increase in the amount of information to be picked-up. Results suggest that the eye-tracking enhancement of spontaneous entrainment is a consequence of increasing the amount of information available to be picked-up. PMID:25866944

  16. Informativeness of the CODIS STR loci for admixture analysis.

    PubMed

    Barnholtz-Sloan, Jill S; Pfaff, Carrie L; Chakraborty, Ranajit; Long, Jeffrey C

    2005-11-01

    Population admixture (or ancestry) is used as an approach to gene discovery in complex diseases, particularly when the disease prevalence varies widely across geographic populations. Admixture analysis could be useful for forensics because an indication of a perpetrator's ancestry would narrow the pool of suspects for a particular crime. The purpose of this study was to use Fisher's information to identify informative sets of markers for admixture analysis. Using published founding population allele frequencies we test three marker sets for efficacy for estimating admixture: the FBI CODIS Core STR loci, the HGDP-CEPH Human Genome Diversity Cell Line Panel and the set of 39 ancestry informative SNPS from the Shriver lab at Pennsylvania State University. We conclude that the FBI CODIS Core STR set is valid for admixture analysis, but not the most precise. We recommend using a combination of the most informative markers from the HGDP-CEPH and Shriver loci sets.

  17. Ancestry, admixture and fitness in Colombian genomes

    PubMed Central

    Rishishwar, Lavanya; Conley, Andrew B.; Wigington, Charles H.; Wang, Lu; Valderrama-Aguirre, Augusto; King Jordan, I.

    2015-01-01

    The human dimension of the Columbian Exchange entailed substantial genetic admixture between ancestral source populations from Africa, the Americas and Europe, which had evolved separately for many thousands of years. We sought to address the implications of the creation of admixed American genomes, containing novel allelic combinations, for human health and fitness via analysis of an admixed Colombian population from Medellin. Colombian genomes from Medellin show a wide range of three-way admixture contributions from ancestral source populations. The primary ancestry component for the population is European (average = 74.6%, range = 45.0%–96.7%), followed by Native American (average = 18.1%, range = 2.1%–33.3%) and African (average = 7.3%, range = 0.2%–38.6%). Locus-specific patterns of ancestry were evaluated to search for genomic regions that are enriched across the population for particular ancestry contributions. Adaptive and innate immune system related genes and pathways are particularly over-represented among ancestry-enriched segments, including genes (HLA-B and MAPK10) that are involved in defense against endemic pathogens such as malaria. Genes that encode functions related to skin pigmentation (SCL4A5) and cutaneous glands (EDAR) are also found in regions with anomalous ancestry patterns. These results suggest the possibility that ancestry-specific loci were differentially retained in the modern admixed Colombian population based on their utility in the New World environment. PMID:26197429

  18. Column flooding and entrainment. [Estimation of maximum allowable vapor velocity and entrainment in a distillation column

    SciTech Connect

    Lygeros, A.I.; Magoulas, K.G.

    1986-12-01

    Here is a way to estimate maximum allowable vapor velocity and entrainment in a distillation column. The method can easily be computerized. It is based on equations derived from the widely accepted correlations. The equation for flooding velocity is applicable to bubble-cup, sieve and valve trays, while the entrainment equation applies only to sieve trays.

  19. Analysis of admixture and genetic structure of two Native American groups of Southern Argentinean Patagonia.

    PubMed

    Sala, Andrea; Corach, Daniel

    2014-03-01

    Argentinean Patagonia is inhabited by people that live principally in urban areas and by small isolated groups of individuals that belong to indigenous aboriginal groups; this territory exhibits the lowest population density of the country. Mapuche and Tehuelche (Mapudungun linguistic branch), are the only extant Native American groups that inhabit the Argentinean Patagonian provinces of Río Negro and Chubut. Fifteen autosomal STRs, 17 Y-STRs, mtDNA full length control region sequence and two sets of Y and mtDNA-coding region SNPs were analyzed in a set of 434 unrelated individuals. The sample set included two aboriginal groups, a group of individuals whose family name included Native American linguistic root and urban samples from Chubut, Río Negro and Buenos Aires provinces of Argentina. Specific Y Amerindian haplogroup Q1 was found in 87.5% in Mapuche and 58.82% in Tehuelche, while the Amerindian mtDNA haplogroups were present in all the aboriginal sample contributors investigated. Admixture analysis performed by means of autosomal and Y-STRs showed the highest degree of admixture in individuals carrying Mapuche surnames, followed by urban populations, and finally by isolated Native American populations as less degree of admixture. The study provided novel genetic information about the Mapuche and Tehuelche people and allowed us to establish a genetic correlation among individuals with Mapudungun surnames that demonstrates not only a linguistic but also a genetic relationship to the isolated aboriginal communities, representing a suitable proxy indicator for assessing genealogical background.

  20. Nonphotic entrainment of the human circadian pacemaker

    NASA Technical Reports Server (NTRS)

    Klerman, E. B.; Rimmer, D. W.; Dijk, D. J.; Kronauer, R. E.; Rizzo, J. F. 3rd; Czeisler, C. A.

    1998-01-01

    In organisms as diverse as single-celled algae and humans, light is the primary stimulus mediating entrainment of the circadian biological clock. Reports that some totally blind individuals appear entrained to the 24-h day have suggested that nonphotic stimuli may also be effective circadian synchronizers in humans, although the nonphotic stimuli are probably comparatively weak synchronizers, because the circadian rhythms of many totally blind individuals "free run" even when they maintain a 24-h activity-rest schedule. To investigate entrainment by nonphotic synchronizers, we studied the endogenous circadian melatonin and core body temperature rhythms of 15 totally blind subjects who lacked conscious light perception and exhibited no suppression of plasma melatonin in response to ocular bright-light exposure. Nine of these fifteen blind individuals were able to maintain synchronization to the 24-h day, albeit often at an atypical phase angle of entrainment. Nonphotic stimuli also synchronized the endogenous circadian rhythms of a totally blind individual to a non-24-h schedule while living in constant near darkness. We conclude that nonphotic stimuli can entrain the human circadian pacemaker in some individuals lacking ocular circadian photoreception.

  1. On dust entrainment in photoevaporative winds

    NASA Astrophysics Data System (ADS)

    Hutchison, Mark A.; Price, Daniel J.; Laibe, Guillaume; Maddison, Sarah T.

    2016-09-01

    We investigate dust entrainment by photoevaporative winds in protoplanetary discs using dusty smoothed particle hydrodynamics. We use unequal-mass particles to resolve more than five orders of magnitude in disc/outflow density and a one-fluid formulation to efficiently simulate an equivalent magnitude range in drag stopping time. We find that only micron-sized dust grains and smaller can be entrained in extreme-UV radiation-driven winds. The maximum grain size is set by dust settling in the disc rather than aerodynamic drag in the wind. More generally, there is a linear relationship between the base flow density and the maximum entrainable grain size in the wind. A pileup of micron-sized dust grains can occur in the upper atmosphere at critical radii in the disc as grains decouple from the low-density wind. Entrainment is a strong function of location in the disc, resulting in a size sorting of grains in the outflow - the largest grain being carried out between 10 and 20 au. The peak dust density for each grain size occurs at the inner edge of its own entrainment region.

  2. Observational estimates of detrainment and entrainment in non-precipitating shallow cumulus

    NASA Astrophysics Data System (ADS)

    Norgren, M. S.; Small, J. D.; Jonsson, H. H.; Chuang, P. Y.

    2014-08-01

    Vertical transport associated with cumulus clouds is important to the redistribution of gases, particles and energy, with subsequent consequences for many aspects of the climate system. Previous studies have suggested that detrainment from clouds can be comparable to the updraft mass flux, and thus represents an important contribution to vertical transport. In this study, we describe a new method to deduce the amounts of gross detrainment and entrainment experienced by non-precipitating cumulus clouds using aircraft observations. The method utilizes equations for three conserved variables: cloud mass, total water and moist static energy. Optimizing these three equations leads to estimates of the mass fractions of adiabatic mixed-layer air, entrained air and detrained air that the sampled cloud has experienced. The method is applied to six flights of the CIRPAS Twin Otter during the Gulf of Mexico Atmospheric Composition and Climate Study (GoMACCS) which took place in the Houston, Texas region during the summer of 2006 during which 176 small, non-precipitating cumulus were sampled. Our analysis suggests that, on average, these clouds were comprised of 30 to 70% mixed-layer air, with entrained air comprising most of the remainder. The mass fraction of detrained air was less than 2% for a majority of the clouds, although 15% of them did exhibit detrained air fractions larger than 10%. Entrained and detrained air mass fractions both increased with altitude, and the largest detrainment events were almost all associated with air that was at their level of neutral buoyancy, findings that are consistent with previous studies.

  3. Flowmeter for gas-entrained solids flow

    DOEpatents

    Porges, Karl G.

    1990-01-01

    An apparatus and method for the measurement of solids feedrate in a gas-entrained solids flow conveyance system. The apparatus and method of the present invention include a vertical duct connecting a source of solids to the gas-entrained flow conveyance system, a control valve positioned in the vertical duct, and a capacitive densitometer positioned along the duct at a location a known distance below the control valved so that the solid feedrate, Q, of the gas entrained flow can be determined by Q=S.rho..phi.V.sub.S where S is the cross sectional area of the duct, .rho. is the density of the solid, .phi. is the solid volume fraction determined by the capacitive densitometer, and v.sub.S is the local solid velocity which can be inferred from the konown distance of the capacitive densitometer below the control valve.

  4. Entrainment and mixing in stratified shear flows

    NASA Astrophysics Data System (ADS)

    Strang, Eric James

    1997-12-01

    The results of a laboratory experiment designed to study turbulent entrainment at sheared density interfaces are described. In the parameter ranges investigated the entrainment problem is mainly determined by two parameters, the bulk Richardson number RiB = /Delta bD//Delta U2 and the frequency ratio fN = ND//Delta U. When RiB > 1.5, the buoyancy effects play a governing role, whence interfacial instabilities locally mix heavy and light fluids. The nature of interfacial instabilities is governed by RiB or a related quantity, the mean local gradient Richardson number /overline [Ri]g=/overline [N(z)]2/(/overline[/partial u//partial z)]2, where N(z) is the Brunt-Vaisala frequency local to the interface. When RiB < 5 (or /overline [Rig] < 1), the interfacial mixing is dominated by Kelvin- Helmholtz (K-H) instabilities. Interfacial swelling as a result of the collective breakdown of K-H billows into turbulence persists for a time dictated by the rates of local generation and removal of mixed fluid, and the two processes appear to be coadjutant (with a maximum flux Richardson number or mixing efficiency of Rif ~ 0.15-0.4) when RiB≃ 3-5. At RiB~ 5, the K-H regime transitions to a new regime wherein the interface is dominated by interfacial/Holmboe wave instabilities. Here, the entrainment rates are much smaller and there is no evidence of interfacial swelling. In the K-H regime, the swelling of the interface introduces its own forcing time scale, which excites and radiates internal waves in the lower layer if it is continuously stratified. Consequently, the amount of energy available for entrainment decreases and, depending on fN, the entrainment velocities in the linearly stratified case can be substantially smaller than the two-layer case (up to 50%). In the interfacial/Holmboe wave breaking regime, internal wave radiation to the bottom layer is much smaller, so as the difference in entrainment rates of the two-layer and linearly stratified cases. Furthermore, when Ri

  5. Entrainment measurements in annular flow

    SciTech Connect

    Assad, A.; Jan, C.; Bertodano, M. de; Beus, S.G.

    1997-07-01

    Air/water and vapor/freon were utilized to scale and simulate annular two-phase flow for high pressure steam/water conditions. A unique vapor/liquid Freon loop was built to obtain the high pressure data. The results were compared with two correlations available in the open literature. The Ishii and Mishima dimensionless group was able to scale the data remarkably well even for vapor/liquid Freon. However, the correlation needs to be adjusted for high Weber numbers of the gas phase.

  6. [The development of a dispensing cabinet of total nutrient admixture].

    PubMed

    Wu, Xiao-an

    2002-03-01

    A dispensing cabinet of total nutrient admixture is introduced in this paper. Which can be used for nutrient solution dispensing. The clinical application shows that it can provide a practical, simple, safe and satisfactory sterile environment. PMID:16104182

  7. Observational estimates of detrainment and entrainment in non-precipitating shallow cumulus

    NASA Astrophysics Data System (ADS)

    Norgren, M. S.; Small, J. D.; Jonsson, H. H.; Chuang, P. Y.

    2016-01-01

    Vertical transport associated with cumulus clouds is important to the redistribution of gases, particles, and energy, with subsequent consequences for many aspects of the climate system. Previous studies have suggested that detrainment from clouds can be comparable to the updraft mass flux, and thus represents an important contribution to vertical transport. In this study, we describe a new method to deduce the amounts of gross detrainment and entrainment experienced by non-precipitating cumulus clouds using aircraft observations. The method utilizes equations for three conserved variables: cloud mass, total water, and moist static energy. Optimizing these three equations leads to estimates of the mass fractions of adiabatic mixed-layer air, entrained air and detrained air that the sampled cloud has experienced. The method is applied to six flights of the CIRPAS Twin Otter during the Gulf of Mexico Atmospheric Composition and Climate Study (GoMACCS) which took place in the Houston, Texas region during the summer of 2006 during which 176 small, non-precipitating cumuli were sampled. Using our novel method, we find that, on average, these clouds were comprised of 30 to 70 % mixed-layer air, with entrained air comprising most of the remainder. The mass fraction of detrained air was usually very small, less than 2 %, although values larger than 10 % were found in 15 % of clouds. Entrained and detrained air mass fractions both increased with altitude, consistent with some previous observational studies. The largest detrainment events were almost all associated with air that was at their level of neutral buoyancy, which has been hypothesized in previous modeling studies. This new method could be readily used with data from other previous aircraft campaigns to expand our understanding of detrainment for a variety of cloud systems.

  8. Estimation of race admixture--a new method.

    PubMed

    Chakraborty, R

    1975-05-01

    The contribution of a parental population in the gene pool of a hybrid population which arose by hybridization with one or more other populations is estimated here at the population level from the probability of gene identity. The dynamics of accumulation of such admixture is studied incorporating the fluctuations due to finite size of the hybrid population. The method is illustrated with data on admixture in Cherokee Indians. PMID:1146991

  9. Entrainment rate of droplets in the ripple-annular regime for small vertical tubes

    SciTech Connect

    Lopez de Bertodano, M.A.; Assad, A.; Beus, S.G.

    1998-06-01

    Two-fluid model predictions of film dryout in annular flow are limited by the uncertainties in the constitutive relations for the entrainment rate of droplets from the liquid film. The main cause of these uncertainties is the lack of separate effects experimental data in the range of the operating conditions in nuclear power reactors. Air/water and Freon-113 entrainment rate data have been obtained in 10 mm tubes using the film extraction technique. These experiments have been scaled to approach high pressure steam-water flow conditions. The effects of surface tension and density ratio, missing from most previous data sets, have been systematically tested. The entrainment rate mechanism is assumed to be a Kelvin-Helmholtz instability. Based on this analysis and two previous correlations, a new correlation is proposed that is valid for low viscosity fluids in small ducts in the ripple annular regime.

  10. Droplet impact on a liquid pool and bubble entrainment for low Bond numbers

    NASA Astrophysics Data System (ADS)

    Sleutel, Pascal; Tsai, Pei Hsun; Bouwhuis, Wilco; Thoraval, Marie-Jean; Visser, Claas-Willem; Wang, An-Bang; Versluis, Michel; Lohse, Detlef

    2015-11-01

    Droplets impacting on a pool of liquid and the subsequent bubble entrainment has been well studied for high Bond numbers where the droplets size is large and velocities are low. Here we study for the first time the droplet impact and bubble entrainment in an entirely new parameter regime (Bo ~ 10-2 -10-3 , U ~ 6-20 m/s, D ~ 0.08-0.4 mm). We follow up on the pioneering work of Oguz & Prosperetti, now in the surface tension dominated regime. We predict the bubble entrainment zone by balancing movement of the cavity bottom and droplet inertia with capillary waves enclosing the bubble. Both high-speed imaging experiments and numerical simulations in Gerris validate the model and show the importance of air for smaller droplet sizes.

  11. Lidar observations of mixed layer dynamics - Tests of parameterized entrainment models of mixed layer growth rate

    NASA Technical Reports Server (NTRS)

    Boers, R.; Eloranta, E. W.; Coulter, R. L.

    1984-01-01

    Ground based lidar measurements of the atmospheric mixed layer depth, the entrainment zone depth and the wind speed and wind direction were used to test various parameterized entrainment models of mixed layer growth rate. Six case studies under clear air convective conditions over flat terrain in central Illinois are presented. It is shown that surface heating alone accounts for a major portion of the rise of the mixed layer on all days. A new set of entrainment model constants was determined which optimized height predictions for the dataset. Under convective conditions, the shape of the mixed layer height prediction curves closely resembled the observed shapes. Under conditions when significant wind shear was present, the shape of the height prediction curve departed from the data suggesting deficiencies in the parameterization of shear production. Development of small cumulus clouds on top of the layer is shown to affect mixed layer depths in the afternoon growth phase.

  12. Geographic Patterns of Genome Admixture in Latin American Mestizos

    PubMed Central

    Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Dipierri, José E.; Alfaro, Emma L.; Bailliet, Graciela; Bianchi, Nestor O.; Llop, Elena; Rothhammer, Francisco; Excoffier, Laurent; Ruiz-Linares, Andrés

    2008-01-01

    The large and diverse population of Latin America is potentially a powerful resource for elucidating the genetic basis of complex traits through admixture mapping. However, no genome-wide characterization of admixture across Latin America has yet been attempted. Here, we report an analysis of admixture in thirteen Mestizo populations (i.e. in regions of mainly European and Native settlement) from seven countries in Latin America based on data for 678 autosomal and 29 X-chromosome microsatellites. We found extensive variation in Native American and European ancestry (and generally low levels of African ancestry) among populations and individuals, and evidence that admixture across Latin America has often involved predominantly European men and both Native and African women. An admixture analysis allowing for Native American population subdivision revealed a differentiation of the Native American ancestry amongst Mestizos. This observation is consistent with the genetic structure of pre-Columbian populations and with admixture having involved Natives from the area where the Mestizo examined are located. Our findings agree with available information on the demographic history of Latin America and have a number of implications for the design of association studies in population from the region. PMID:18369456

  13. Polymorphic Admixture Typing in Human Ethnic Populations

    PubMed Central

    Dean, Michael; Stephens, J. Claiborne; Winkler, Cheryl; Lomb, Deborah A.; Ramsburg, Mark; Boaze, Raleigh; Stewart, Claudia; Charbonneau, Lauren; Goldman, David; Albaugh, Bernard J.; Goedert, James J.; Beasley, R. Palmer; Hwang, Lu-Yu; Buchbinder, Susan; Weedon, Michael; Johnson, Patricia A.; Eichelberger, Mary; O'Brien, Stephen J.

    1994-01-01

    A panel of 257 RFLP loci was selected on the basis of high heterozygosity in Caucasian DNA surveys and equivalent spacing throughout the human genome. Probes from each locus were used in a Southern blot survey of allele frequency distribution for four human ethnic groups: Caucasian, African American, Asian (Chinese), and American Indian (Cheyenne). Nearly all RFLP loci were polymorphic in each group, albeit with a broad range of differing allele frequencies (δ). The distribution of frequency differences (δ values) was used for three purposes: (1) to provide estimates for genetic distance (differentiation) among these ethnic groups, (2) to revisit with a large data set the proportion of human genetic variation attributable to differentiation within ethnic groups, and (3) to identify loci with high δ values between recently admixed populations of use in mapping by admixture linkage disequilibrium (MALD). Although most markers display significant allele frequency differences between ethnic groups, the overall genetic distances between ethnic groups were small (.066–.098), and <10% of the measured overall molecular genetic diversity in these human samples can be attributed to “racial” differentiation. The median δ values for pairwise comparisons between groups fell between .15 and .20, permitting identification of highly informative RFLP loci for MALD disease association studies. PMID:7942857

  14. Relationships of Entrainment Rate with Dynamical and Thermodynamic Properties in Shallow Convection

    NASA Astrophysics Data System (ADS)

    Lu, C.; Liu, Y.; Zhang, G. J.; Wu, X.; Endo, S.; Cao, L.; Li, Y.; Guo, X.

    2015-12-01

    This work examines the relationships of entrainment rate to vertical velocity, buoyancy, turbulent dissipation rate by applying stepwise principal component regression to observational data from shallow cumulus clouds collected during the Routine AAF [Atmospheric Radiation Measurement (ARM) Aerial Facility] Clouds with Low Optical Water Depths (CLOWD) Optical Radiative Observations (RACORO) field campaign over the ARM Southern Great Plains (SGP) site near Lamont, Oklahoma. The cumulus clouds during the RACORO campaign simulated using a large eddy simulation (LES) model are also examined with the same approach. The analysis shows that combination of multiple variables can better represent entrainment rate in both the observations and LES than the single-variable fitting equations and the three commonly used parameterizations. A new parameterization is thus presented that relates entrainment rate to vertical velocity, buoyancy and dissipation rate; the effects of treating clouds as ensembles and humid shells surrounding cumulus clouds on the new parameterization are discussed. Physical mechanisms underlying the relationships of entrainment rate to vertical velocity, buoyancy and dissipation rate are also explored. Furthermore, the effects of relative humidity in the entrained dry air on the above relationships are discussed; a possible physical mechanism for the effects is explored.

  15. Impact of reduced near-field entrainment of overpressured volcanic jets on plume development

    USGS Publications Warehouse

    Saffaraval, Farhad; Solovitz, Stephen A.; Ogden, Darcy E.; Mastin, Larry G.

    2012-01-01

    Volcanic plumes are often studied using one-dimensional analytical models, which use an empirical entrainment ratio to close the equations. Although this ratio is typically treated as constant, its value near the vent is significantly reduced due to flow development and overpressured conditions. To improve the accuracy of these models, a series of experiments was performed using particle image velocimetry, a high-accuracy, full-field velocity measurement technique. Experiments considered a high-speed jet with Reynolds numbers up to 467,000 and exit pressures up to 2.93 times atmospheric. Exit gas densities were also varied from 0.18 to 1.4 times that of air. The measured velocity was integrated to determine entrainment directly. For jets with exit pressures near atmospheric, entrainment was approximately 30% less than the fully developed level at 20 diameters from the exit. At pressures nearly three times that of the atmosphere, entrainment was 60% less. These results were introduced into Plumeria, a one-dimensional plume model, to examine the impact of reduced entrainment. The maximum column height was only slightly modified, but the critical radius for collapse was significantly reduced, decreasing by nearly a factor of two at moderate eruptive pressures.

  16. Inclined gravity currents filling basins: The influence of Reynolds number on entrainment into gravity currents

    NASA Astrophysics Data System (ADS)

    Hogg, Charlie A. R.; Dalziel, Stuart B.; Huppert, Herbert E.; Imberger, Jörg

    2015-09-01

    In many important natural and industrial systems, gravity currents of dense fluid feed basins. Examples include lakes fed by dense rivers and auditoria supplied with cooled air by ventilation systems. As we will show, the entrainment into such buoyancy driven currents can be influenced by viscous forces. Little work, however, has examined this viscous influence and how entrainment varies with the Reynolds number, Re. Using the idea of an entrainment coefficient, E, we derive a mathematical expression for the rise of the front at the top of the dense fluid ponding in a basin, where the horizontal cross-sectional area of the basin varies linearly with depth. We compare this expression to experiments on gravity currents with source Reynolds numbers, Res, covering the broad range 100 < Res < 1500. The form of the observed frontal rises was well approximated by our theory. By fitting the observed frontal rises to the theoretical form with E as the free parameter, we find a linear trend for E(Res) over the range 350 < Res < 1100, which is in the transition to turbulent flow. In the experiments, the entrainment coefficient, E, varied from 4 × 10-5 to 7 × 10-2. These observations show that viscous damping can be a dominant influence on gravity current entrainment in the laboratory and in geophysical flows in this transitional regime.

  17. Laminar Entrained Flow Reactor (Fact Sheet)

    SciTech Connect

    Not Available

    2014-02-01

    The Laminar Entrained Flow Reactor (LEFR) is a modular, lab scale, single-user reactor for the study of catalytic fast pyrolysis (CFP). This system can be employed to study a variety of reactor conditions for both in situ and ex situ CFP.

  18. Washing of the AW-101 entrained solids

    SciTech Connect

    GJ Lumetta

    2000-03-31

    BNFL Inc. (BNFL) is under contract with the US Department of Energy, River Protection Project (DOE-RPP) to design, construct, and operate facilities for treating wastes stored in the single-shell and double-shell tanks at the Hanford Site, Richland, Washington. The DOE-BNFL RPP contract identifies two feeds to the waste treatment plant: (1) primarily liquid low-activity waste (LAW) consisting of less than 2 wt% entrained solids and (2) high-level waste (HLW) consisting of 10 to 200 g/L solids slurry. This report describes the results of a test conducted by Battelle to assess the effects of inhibited water washing on the composition of the entrained solids in the diluted AW-101 low-activity waste (LAW) sample. The objective of this work was to gather data on the solubility of the AW-101 entrained solids in 0.01 M NaOH, so that BNFL can evaluate whether these solids require caustic leaching. The work was conducted according to test plan BNFL-TP-29953-9, Rev. 0, LAW Entrained Solids Water Wash and Caustic Leach Testing. The test went according to plan, with no deviations from the test plan. Based on the results of the 0.01 M NaOH washing, a decision was made by BNFL to not proceed with the caustic leaching test. The composition of the washed solids was such that caustic leaching would not result in significant reduction in the immobilized HLW volume.

  19. Liquid Droplet Detachment and Entrainment in Microscale Flows

    NASA Astrophysics Data System (ADS)

    Hidrovo, Carlos

    2005-11-01

    In this talk we will present a first order study of liquid water detachment and entrainment into air flows in hydrophobic microchannels. Silicon based microstructures consisting of 23 mm long U-shaped channels of different geometry were used for this purpose. The structures are treated with a Molecular Vapor Deposition (MVD) process that renders them hydrophobic. Liquid water is injected through a side slot located 2/3 of the way downstream from the air channel inlet. The water entering the air channel beads up into slugs or droplets that grow in size at this injection location until they fill and flood the channel or are carried away by the air flow. The slugs/droplets dimensions at detachment are correlated against superficial gas velocity and proper dimensionless parameters are postulated and examined to compare hydrodynamic forces against surface tension. It is found that slug/droplet detachment is dominated by two main forces: pressure gradient drag, arising from confinement of a viscous flow in the channel, and inertial drag, arising from the stagnation of the air due to obstruction by the slugs/droplets. A detachment regime map is postulated based on the relative importance of these forces under different flow conditions.

  20. The Admixture Structure and Genetic Variation of the Archipelago of Cape Verde and Its Implications for Admixture Mapping Studies

    PubMed Central

    Beleza, Sandra; Campos, Joana; Lopes, Jailson; Araújo, Isabel Inês; Hoppfer Almada, Ana; e Silva, António Correia; Parra, Esteban J.; Rocha, Jorge

    2012-01-01

    Recently admixed populations offer unique opportunities for studying human history and for elucidating the genetic basis of complex traits that differ in prevalence between human populations. Historical records, classical protein markers, and preliminary genetic data indicate that the Cape Verde islands in West Africa are highly admixed and primarily descended from European males and African females. However, little is known about the variation in admixture levels, admixture dynamics and genetic diversity across the islands, or about the potential of Cape Verde for admixture mapping studies. We have performed a detailed analysis of phenotypic and genetic variation in Cape Verde based on objective skin color measurements, socio-economic status (SES) evaluations and data for 50 autosomal, 34 X-chromosome, and 21 non-recombinant Y-chromosome (NRY) markers in 845 individuals from six islands of the archipelago. We find extensive genetic admixture between European and African ancestral populations (mean West African ancestry = 0.57, sd = 0.08), with individual African ancestry proportions varying considerably among the islands. African ancestry proportions calculated with X and Y-chromosome markers confirm that the pattern of admixture has been sex-biased. The high-resolution NRY-STRs reveal additional patterns of variation among the islands that are most consistent with differentiation after admixture. The differences in the autosomal admixture proportions are clearly evident in the skin color distribution across the islands (Pearson r = 0.54, P-value<2e–16). Despite this strong correlation, there are significant interactions between SES and skin color that are independent of the relationship between skin color and genetic ancestry. The observed distributions of admixture, genetic variation and skin color and the relationship of skin color with SES relate to historical and social events taking place during the settlement history of Cape Verde, and have

  1. Speech Entrainment Compensates for Broca's Area Damage

    PubMed Central

    Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

    2015-01-01

    Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to speech entrainment. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during speech entrainment versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of speech entrainment to improve speech production and may help select patients for speech entrainment treatment. PMID:25989443

  2. Cloud top entrainment instability and cloud top distributions

    NASA Technical Reports Server (NTRS)

    Boers, Reinout; Spinhirne, James D.

    1990-01-01

    Classical cloud-top entrainment instability condition formulation is discussed. A saturation point diagram is used to investigate the details of mixing in cases where the cloud-top entrainment instability criterion is satisfied.

  3. Annular flow entrainment rate experiment in a vertical pipe

    SciTech Connect

    Lopez de Bertodano, M.A.; Jan, C.-S.; Beus, S.G.

    1996-06-01

    An air-water experiment has been performed to measure the entrainment rate in a small pipe. The current data extend the available database in the literature to higher gas and liquid flows and also to higher pressures. The ranges covered are 8.1 {times} 10{sup 2} kg/m{sup 2}s {lt} (gas flux rate) {lt} 4.5 {times} 10{sup 4} kg/m{sup 2}s, 5.5 kg/m{sup 2}s {lt} (liquid flux rate) {lt} 2.9 {times} 10{sup 2}s and 140 CPU {lt} PP {lt} 660 CPU. The test section has an internal diameter of 9.5 mm and an L/D ratio of 440. The measurements were made by extracting the liquid film at two locations establishing fully developed annular flow. The data were validated by visual observation and comparisons with the data of Cousins and Hewitt. A mechanism for the entrainment rate in terms of Taylor`s ripple instability is proposed. The theory is modified to include the effect of the inertia of the droplets in the gas stream. The model results in a dimensionless group that includes the Weber number based on the droplet concentration and the liquid film Reynolds number. Kataoka and Ishii`s correlation (1982) is modified in light of this model and the new correlation scales the present data and Cousins and Hewitt`s data very well. 19 refs., 8 figs., 3 tabs.

  4. Parameterizing Convective Organization to Escape the Entrainment Dilemma

    NASA Astrophysics Data System (ADS)

    Mapes, Brian; Neale, Richard

    2011-02-01

    Lateral mixing parameters in buoyancy-driven deep convection schemes are among the most sensitive and important unknowns in atmosphere models. Unfortunately, there is not a true optimum value for plume mixing rate, but rather a dilemma or tradeoff: Excessive dilution of updrafts leads to unstable stratification bias in the mean state, while inadequate dilution allows deep convection to occur too easily, causing poor space and time distributions and variability. In this too-small parameter space, compromises are made based on competing metrics of model performance. We attempt to escape this "entrainment dilemma" by making bulk plume parameters (chiefly entrainment rate) depend on a new prognostic variable ("organization," org) meant to reflect the rectified effects of subgrid-scale structure in meteorological fields. We test an org scheme in the Community Atmosphere Model (CAM5) with a new unified shallow-deep convection scheme (UW-ens, a 2-plume version of the University of Washington scheme). Since buoyant ascent involves natural selection, subgrid structure makes convection systematically deeper and stronger than the pure unorganized case: plumes of average (or randomly sampled) air rising in the average environment. To reflect this, org is nonnegative, but we leave it dimensionless. A time scale characterizes its behavior (here ˜3 h for a 2o model). Currently its source is rain evaporation, but other sources can be added easily. We also let org be horizontally transported by advection, as a mass-weighted mean over the convecting layer. Linear coefficients link org to a plume ensemble, which it assists via: 1) plume base warmth above the mean temperature 2) plume radius enhancement (reduced mixing), and 3) increased probability of overlap in a multi-plume scheme, where interactions benefit later generations (this part has only been implemented in an offline toy column model). Since rain evaporation is a source for org, it functions as a time-lagged but positive

  5. Parameterizing Convective Organization to Escape the Entrainment Dilemma

    NASA Astrophysics Data System (ADS)

    Mapes, Brian; Neale, Richard

    2011-06-01

    Lateral mixing parameters in buoyancy-driven deep convection schemes are among the most sensitive and important unknowns in atmosphere models. Unfortunately, there is not a true optimum value for plume mixing rate, but rather a dilemma or tradeoff: Excessive dilution of updrafts leads to unstable stratification bias in the mean state, while inadequate dilution allows deep convection to occur too easily, causing poor space and time distributions and variability. In this too-small parameter space, compromises are made based on competing metrics of model performance. We attempt to escape this “entrainment dilemma” by making bulk plume parameters (chiefly entrainment rate) depend on a new prognostic variable (“organization,” org) meant to reflect the rectified effects of subgrid-scale structure in meteorological fields. We test an org scheme in the Community Atmosphere Model (CAM5) with a new unified shallow-deep convection scheme (UW-ens, a 2-plume version of the University of Washington scheme). Since buoyant ascent involves natural selection, subgrid structure makes convection systematically deeper and stronger than the pure unorganized case: plumes of average (or randomly sampled) air rising in the average environment. To reflect this, org is nonnegative, but we leave it dimensionless. A time scale characterizes its behavior (here ˜3 h for a 2o model). Currently its source is rain evaporation, but other sources can be added easily. We also let org be horizontally transported by advection, as a mass-weighted mean over the convecting layer. Linear coefficients link org to a plume ensemble, which it assists via: 1) plume base warmth above the mean temperature 2) plume radius enhancement (reduced mixing), and 3) increased probability of overlap in a multi-plume scheme, where interactions benefit later generations (this part has only been implemented in an offline toy column model). Since rain evaporation is a source for org, it functions as a time-lagged but

  6. Observational constraints on entrainment and the entrainment interface layer in stratocumulus

    NASA Astrophysics Data System (ADS)

    Carman, J. K.; Rossiter, D. L.; Khelif, D.; Jonsson, H. H.; Faloona, I. C.; Chuang, P. Y.

    2012-01-01

    Aircraft sampling of the stratocumulus-topped boundary layer (STBL) during the Physics of Stratocumulus Top (POST) experiment was primarily achieved using sawtooth flight patterns, during which the atmospheric layer 100 m above and below cloud top was sampled at a frequency of once every 2 min. The large data set that resulted from each of the 16 flights document the complex structure and variability of this interfacial region in a variety of conditions. In this study, we first describe some properties of the entrainment interface layer (EIL), where strong gradients in turbulent kinetic energy (TKE), potential temperature and moisture can be found. We find that defining the EIL by the first two properties tend to yield similar results, but that moisture can be a misleading tracer of the EIL. These results are consistent with studies using large-eddy simulations. We next utilize the POST data to shed light on and constrain processes relevant to entrainment, a key process in the evolution of the STBL that to-date is not well-represented even by high resolution models. We define "entrainment efficiency" as the ratio of the TKE consumed by entrainment to that generated within the STBL (primarily by cloud-top cooling). We find values for the entrainment efficiency that vary by 1.5 orders of magnitude, which is even greater than the one order magnitude that previous modeling results have suggested. Our analysis also demonstrate that the entrainment efficiency depends on the strength of the stratification of the EIL, but not on the TKE in the cloud top region. The relationships between entrainment efficiency and other STBL parameters serve as novel observational contraints for simulations of entrainment in such systems.

  7. Observational constraints on entrainment and the entrainment interface layer in stratocumulus

    NASA Astrophysics Data System (ADS)

    Carman, J. K.; Rossiter, D. L.; Khelif, D.; Jonsson, H. H.; Faloona, I. C.; Chuang, P. Y.

    2012-11-01

    Aircraft sampling of the stratocumulus-topped boundary layer (STBL) during the Physics of Stratocumulus Top (POST) experiment was primarily achieved using sawtooth flight patterns, during which the atmospheric layer 100 m above and below cloud top was sampled at a frequency of once every 2 min. The large data set that resulted from each of the 16 flights document the complex structure and variability of this interfacial region in a variety of conditions. In this study, we first describe some properties of the entrainment interface layer (EIL), where strong gradients in turbulent kinetic energy (TKE), potential temperature and moisture can be found. We find that defining the EIL by the first two properties tends to yield similar results, but that moisture can be a misleading tracer of the EIL. These results are consistent with studies using large-eddy simulations. We next utilize the POST data to shed light on and constrain processes relevant to entrainment, a key process in the evolution of the STBL that to-date is not well-represented even by high resolution models. We define "entrainment efficiency" as the ratio of the TKE consumed by entrainment to that generated within the STBL (primarily by cloud-top cooling). We find values for the entrainment efficiency that vary by 1.5 orders of magnitude, which is even greater than the one order magnitude that previous modeling results have suggested. Our analysis also demonstrates that the entrainment efficiency depends on the strength of the stratification of the EIL, but not on the TKE in the cloud top region. The relationships between entrainment efficiency and other STBL parameters serve as novel observational contraints for simulations of entrainment in such systems.

  8. Two-stage-type electrostatic precipitator re-entrainment phenomena under diesel flue gases

    SciTech Connect

    Zukeran, Akinori; Ehara, Yoshiyasu; Ito, Tairo; Matsuyama, M.; Ikeda, Yasushi; Kawakami, Hitomi; Takahashi, Takeo; Takamatsu, Takeshi

    1999-03-01

    One of the applications of the electrostatic precipitator (ESP) is the cleaning of air to increase the visibility index in highway tunnels. Particles floating in air in highway tunnels are mainly carbon. Collection efficiency of a large particle diameter in an ESP often decreases when the ESP collects carbon particles which have low electric resistance. Collection efficiency often becomes negative in an experimental ESP. The negative collection efficiency means that the particle concentration flowing downstream is greater than that upstream in the ESP. The negative collection efficiency means that the particle concentration flowing downstream is greater than that upstream in the ESP. This phenomenon is explained as the re-entrainment of particles. In this paper, experiments were carried out to investigate the cause of the decrease in efficiency of particle collection of the ESP. The time characteristic of the collection efficiency and the distribution of particle size on the collection electrodes were studied. Experimental results showed that the decrease in the collection efficiency and the distribution of particle size on the collection electrodes were studied. Experimental results showed that the decrease in the collection efficiency was caused by re-entrainment of particles during the ESP operation. The effect of gas-flow velocity on the collection efficiency of the ESP was also investigated to study the cause of re-entrainment phenomena. The result showed that the re-entrainment phenomena depended on the gas-flow velocity.

  9. Maximum-likelihood estimation of admixture proportions from genetic data.

    PubMed Central

    Wang, Jinliang

    2003-01-01

    For an admixed population, an important question is how much genetic contribution comes from each parental population. Several methods have been developed to estimate such admixture proportions, using data on genetic markers sampled from parental and admixed populations. In this study, I propose a likelihood method to estimate jointly the admixture proportions, the genetic drift that occurred to the admixed population and each parental population during the period between the hybridization and sampling events, and the genetic drift in each ancestral population within the interval between their split and hybridization. The results from extensive simulations using various combinations of relevant parameter values show that in general much more accurate and precise estimates of admixture proportions are obtained from the likelihood method than from previous methods. The likelihood method also yields reasonable estimates of genetic drift that occurred to each population, which translate into relative effective sizes (N(e)) or absolute average N(e)'s if the times when the relevant events (such as population split, admixture, and sampling) occurred are known. The proposed likelihood method also has features such as relatively low computational requirement compared with previous ones, flexibility for admixture models, and marker types. In particular, it allows for missing data from a contributing parental population. The method is applied to a human data set and a wolflike canids data set, and the results obtained are discussed in comparison with those from other estimators and from previous studies. PMID:12807794

  10. Testing for Ancient Admixture between Closely Related Populations

    PubMed Central

    Durand, Eric Y.; Patterson, Nick; Reich, David; Slatkin, Montgomery

    2011-01-01

    One enduring question in evolutionary biology is the extent of archaic admixture in the genomes of present-day populations. In this paper, we present a test for ancient admixture that exploits the asymmetry in the frequencies of the two nonconcordant gene trees in a three-population tree. This test was first applied to detect interbreeding between Neandertals and modern humans. We derive the analytic expectation of a test statistic, called the D statistic, which is sensitive to asymmetry under alternative demographic scenarios. We show that the D statistic is insensitive to some demographic assumptions such as ancestral population sizes and requires only the assumption that the ancestral populations were randomly mating. An important aspect of D statistics is that they can be used to detect archaic admixture even when no archaic sample is available. We explore the effect of sequencing error on the false-positive rate of the test for admixture, and we show how to estimate the proportion of archaic ancestry in the genomes of present-day populations. We also investigate a model of subdivision in ancestral populations that can result in D statistics that indicate recent admixture. PMID:21325092

  11. AW-101 entrained solids - Solubility versus temperature

    SciTech Connect

    GJ Lumetta; RC Lettau; GF Piepel

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the solubility of the solids entrained in the diluted AW-101 low-activity waste (LAW) sample. BNFL requested Battelle to dilute the AW-1-1 sample using de-ionized water to mimic expected plant operating conditions. BNFL further requested Battelle to assess the solubility of the solids present in the diluted AW-101 sample versus temperature conditions of 30, 40, and 50 C. BNFL requested these tests to assess the composition of the LAW supernatant and solids versus expected plant-operating conditions. The work was conducted according to test plan BNFL-TP-29953-7, Rev. 0, Determination of the Solubility of LAW Entrained Solids. The test went according to plan, with no deviations from the test plan.

  12. Rod Driven Frequency Entrainment and Resonance Phenomena

    PubMed Central

    Salchow, Christina; Strohmeier, Daniel; Klee, Sascha; Jannek, Dunja; Schiecke, Karin; Witte, Herbert; Nehorai, Arye; Haueisen, Jens

    2016-01-01

    A controversy exists on photic driving in the human visual cortex evoked by intermittent photic stimulation. Frequency entrainment and resonance phenomena are reported for frequencies higher than 12 Hz in some studies while missing in others. We hypothesized that this might be due to different experimental conditions, since both high and low intensity light stimulation were used. However, most studies do not report radiometric measurements, which makes it impossible to categorize the stimulation according to photopic, mesopic, and scotopic vision. Low intensity light stimulation might lead to scotopic vision, where rod perception dominates. In this study, we investigated photic driving for rod-dominated visual input under scotopic conditions. Twelve healthy volunteers were stimulated with low intensity light flashes at 20 stimulation frequencies, leading to rod activation only. The frequencies were multiples of the individual alpha frequency (α) of each volunteer in the range from 0.40 to 2.30∗α. Three hundred and six-channel whole head magnetoencephalography recordings were analyzed in time, frequency, and spatiotemporal domains with the Topographic Matching Pursuit algorithm. We found resonance phenomena and frequency entrainment for stimulations at or close to the individual alpha frequency (0.90–1.10∗α) and half of the alpha frequency (0.40–0.55∗α). No signs of resonance and frequency entrainment phenomena were revealed around 2.00∗α. Instead, on-responses at the beginning and off-responses at the end of each stimulation train were observed for the first time in a photic driving experiment at frequencies of 1.30–2.30∗α, indicating that the flicker fusion threshold was reached. All results, the resonance and entrainment as well as the fusion effects, provide evidence for rod-dominated photic driving in the visual cortex. PMID:27588002

  13. Rod Driven Frequency Entrainment and Resonance Phenomena.

    PubMed

    Salchow, Christina; Strohmeier, Daniel; Klee, Sascha; Jannek, Dunja; Schiecke, Karin; Witte, Herbert; Nehorai, Arye; Haueisen, Jens

    2016-01-01

    A controversy exists on photic driving in the human visual cortex evoked by intermittent photic stimulation. Frequency entrainment and resonance phenomena are reported for frequencies higher than 12 Hz in some studies while missing in others. We hypothesized that this might be due to different experimental conditions, since both high and low intensity light stimulation were used. However, most studies do not report radiometric measurements, which makes it impossible to categorize the stimulation according to photopic, mesopic, and scotopic vision. Low intensity light stimulation might lead to scotopic vision, where rod perception dominates. In this study, we investigated photic driving for rod-dominated visual input under scotopic conditions. Twelve healthy volunteers were stimulated with low intensity light flashes at 20 stimulation frequencies, leading to rod activation only. The frequencies were multiples of the individual alpha frequency (α) of each volunteer in the range from 0.40 to 2.30(∗)α. Three hundred and six-channel whole head magnetoencephalography recordings were analyzed in time, frequency, and spatiotemporal domains with the Topographic Matching Pursuit algorithm. We found resonance phenomena and frequency entrainment for stimulations at or close to the individual alpha frequency (0.90-1.10(∗)α) and half of the alpha frequency (0.40-0.55(∗)α). No signs of resonance and frequency entrainment phenomena were revealed around 2.00(∗)α. Instead, on-responses at the beginning and off-responses at the end of each stimulation train were observed for the first time in a photic driving experiment at frequencies of 1.30-2.30(∗)α, indicating that the flicker fusion threshold was reached. All results, the resonance and entrainment as well as the fusion effects, provide evidence for rod-dominated photic driving in the visual cortex. PMID:27588002

  14. Impacts of winds on volcanic plumes - Do crossflows challenge the Morton, Turner and Taylor entrainment assumptions?

    NASA Astrophysics Data System (ADS)

    Aubry, T. J.; Jellinek, M.; Carazzo, G.

    2014-12-01

    Volcanic plumes rising into Earth's atmosphere are influenced strongly by tropospheric and stratospheric winds. In the absence of wind effects, Morton, Taylor and Turner (MTT, 1956) used a similarity theory to show that the maximum height for these flows is governed mostly by the atmospheric stratification and the buoyancy flux at the vent. Crucially, in developing this theory MTT introduced the "entrainment hypothesis" in which the rate of entrainment of atmospheric air by the large eddies forming at the edge of the plume is proportional to some bulk velocity. In the presence of wind a key question is whether the additional stirring deforms eddies sufficiently to alter their mixing properties. In particular, under what conditions will wind effects enhance or reduce entrainment? Can these effects be captured in a modified form of the MTT similarity theory or is a new theory required? We use an extensive set of experiments on wind-forced turbulent plumes in order to overcome the restricted dynamical conditions explored in previous experimental studies. We introduce a new regime parameter allowing to quantitatively separate three distinct plume regimes. Remarkably, we show that for reasonable conditions on Earth, the major effects of wind can still be captured by a modified scaling law derived from the self-similar theory of MTT, with an entrainment rate including the contributions of wind. However, analysis of the turbulence motions in our experiments shows that even weak winds introduce large asymmetries in the structure of entraining eddies. Our successful application of a mean entrainment rate at the plume edge and a modified MTT similarity theory is, thus, surprising. Does this apparent contradiction simply reveal the way turbulent instabilities driven by wind manifest themselves?

  15. Alignment strategies for the entrainment of music and movement rhythms.

    PubMed

    Moens, Bart; Leman, Marc

    2015-03-01

    Theories of entrainment assume that spontaneous entrainment emerges from dynamic laws that operate via mediators on interactions, whereby entrainment is facilitated if certain conditions are fulfilled. In this study, we show that mediators can be built that affect the entrainment of human locomotion to music. More specifically, we built D-Jogger, a music player that functions as a mediator between music and locomotion rhythms. The D-Jogger makes it possible to manipulate the timing differences between salient moments of the rhythms (beats and footfalls) through the manipulation of the musical period and phase, which affect the condition in which entrainment functions. We conducted several experiments to explore different strategies for manipulating the entrainment of locomotion and music. The results of these experiments showed that spontaneous entrainment can be manipulated, thereby suggesting different strategies on how to embark. The findings furthermore suggest a distinction among different modalities of entrainment: finding the beat (the most difficult part of entrainment), keeping the beat (easier, as a temporal scheme has been established), and being in phase (no entrainment is needed because the music is always adapted to the human rhythm). This study points to a new avenue of research on entrainment and opens new perspectives for the neuroscience of music.

  16. Exploring Entrainment Patterns of Human Emotion in Social Media

    PubMed Central

    Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace. PMID:26953692

  17. Exploring Entrainment Patterns of Human Emotion in Social Media.

    PubMed

    He, Saike; Zheng, Xiaolong; Zeng, Daniel; Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace.

  18. Exploring Entrainment Patterns of Human Emotion in Social Media.

    PubMed

    He, Saike; Zheng, Xiaolong; Zeng, Daniel; Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace. PMID:26953692

  19. The influence of large-scale structures on entrainment in a decelerating transient turbulent jet revealed by large eddy simulation

    NASA Astrophysics Data System (ADS)

    Hu, Bing; Musculus, Mark P. B.; Oefelein, Joseph C.

    2012-04-01

    To provide a better understanding of the fluid mechanical mechanisms governing entrainment in decelerating jets, we performed a large eddy simulation (LES) of a transient air jet. The ensemble-averaged LES calculations agree well with the available measurements of centerline velocity, and they reveal a region of increased entrainment that grows as it propagates downstream during deceleration. Within the temporal and spatial domains of the simulation, entrainment during deceleration temporarily increases by roughly a factor of two over that of the quasi-steady jet, and thereafter decays to a level lower than the quasi-steady jet. The LES results also provide large-structure flow details that lend insight into the effects of deceleration on entrainment. The simulations show greater growth and separation of large vortical structures during deceleration. Ambient fluid is engulfed into the gaps between the large-scale structures, causing large-scale indentations in the scalar jet boundary. The changes in the growth and separation of large structures during deceleration are attributed to changes in the production and convection of vorticity. Both the absolute and normalized scalar dissipation rates decrease during deceleration, implying that changes in small-scale mixing during deceleration do not play an important role in the increased entrainment. Hence, the simulations predict that entrainment in combustion devices may be controlled by manipulating the fuel-jet boundary conditions, which affect structures at large scales much more than at small scales.

  20. Optical Properties of TGS Crystal with L-Valine Admixture

    SciTech Connect

    Stadnyk, V. Yo. Romanyuk, N. A.; Kiryk, Yu. I.

    2010-11-15

    The thermal expansion and temperature and the spectral dependences of the refractive indices and birefringence of triglycine sulphate (TGS) crystals with a 5% L-valine admixture have been investigated. It is established that the introduction of L-valine weakens the temperature dependence of the refractive indices and the birefringence and thermal expansion of TGS crystals. The parameters of the Sellmeier formula, refractions, and electronic polarizabilities are calculated. The changes observed may be related to the increase in hardness of admixture-containing crystals, the decrease in the spontaneous polarization, the replacement of the refraction components of the valine bond, or the spontaneous electro-optic effect.

  1. Viscous-inviscid calculations of jet entrainment effects on the subsonic flow over nozzle afterbodies

    NASA Technical Reports Server (NTRS)

    Wilmoth, R. G.

    1980-01-01

    A viscous-inviscid interaction model was developed to account for jet entrainment effects in the prediction of the subsonic flow over nozzle afterbodies. The model is based on the concept of a weakly interacting shear layer in which the local streamline deflections due to entrainment are accounted for by a displacement-thickness type of correction to the inviscid plume boundary. The entire flow field is solved in an iterative manner to account for the effects on the inviscid external flow of the turbulent boundary layer, turbulent mixing and chemical reactions in the shear layer, and the inviscid jet exhaust flow. The components of the computational model are described, and numerical results are presented to illustrate the interactive effects of entrainment on the overall flow structure. The validity of the model is assessed by comparisons with data obtained form flow-field measurements on cold-air jet exhausts. Numerical results and experimental data are also given to show the entrainment effects on nozzle boattail drag under various jet exhaust and free-stream flow conditions.

  2. Entrainment and detrainment required to explain updraft properties and work dissipation

    NASA Astrophysics Data System (ADS)

    Michaud, L. M.

    1998-05-01

    A one-dimensional thermodynamic entrainment-detrainment model is used to determine updraft virtual temperature excess, updraft velocity, other updraft properties from sounding data. The model correctly predicts most updraft properties explains how work of buoyancy is dissipated. The unique feature of the model is that fractional entrainment detrainment are both functions of the virtual temperature excess of the updraft independent of updraft mass or diameter. The updraft temperature composition are rigorously determined before updraft velocity is considered. The entrainment detrainment functions allow the flows in out of the updraft to vary in a physically realistic way are used from the base of the sounding to cloud top. The model limits the growth of cumulus under conditions of dry air aloft. The model shows that entrainment inhibits deep convection. The model predicts higher intensity for continental than for oceanic updrafts. High humidity at the bottom of the atmosphere decreases the intensity of the updrafts because it lowers the condensation level, the level at which evaporative cooling comes into play. High humidity aloft increases the intensity of the updrafts because it reduced evaporative cooling.

  3. The role of induced entrainment in past stratiform cloud seeding experiments

    NASA Astrophysics Data System (ADS)

    Walcek, C. J.

    2010-12-01

    In the late 1940s, probably the most effective and visually-obvious cloud seeding demonstrations showed that supercooled stratiform clouds could be cleared by seeding with dry ice, dropped from aircraft flying above a cloud deck. Numerous well-documents photos show areas 1-2 miles wide cleared along a flight track. The accepted mechanism of cloud clearing assumed that dry ice induced ice formation in the supercooled liquid cloud, followed by growth of ice at the expense of water, with the larger ice particles ultimately falling as snow. The mechanism was amplified by dynamic feedbacks induced by latent heat release (warming) as liquid water froze, thus propagating the dynamic and freezing/precipitation cycle laterally away from the flight track. Here we show that probably a more important effect is the entrainment and EVAPORATION of cloud water induced by turbulent mixing in the aircraft wake. Under many conditions, evaporation induced by turbulence can generate mixtures of air that are COLDER than the cloudy air or the air above the cloud, thus initiating unstable DOWNWARD (negatively-buoyant) motions, which will self-propagate laterally away from a turbulent flight track. We present here the range of environmental conditions where entrainment/evaporation would be most likely to occur in terms of the temperature difference between cloudy air and air just above cloud top, and the relative humidity of air above cloud top at different temperatures and altitudes in the atmosphere. It is suggested here that past cloud seeding experiments had little to do with glaciation, and more likely resulted from induced entrainment followed by evaporation and downward motions of negatively buoyant air resulting from cloud-top entrainment instability. Buoyancy and condensed water content of mixtures of cloudy air and cloud-free air immediately above cloud top vs. the mixing proportions. A supercooled cloud containing 0.1 g/kg liquid water at 600 mb, -20 degrees C is mixed with air

  4. On-line ultrasonic gas entrainment monitor

    DOEpatents

    Day, Clifford K.; Pedersen, Herbert N.

    1978-01-01

    Apparatus employing ultrasonic energy for detecting and measuring the quantity of gas bubbles present in liquids being transported through pipes. An ultrasonic transducer is positioned along the longitudinal axis of a fluid duct, oriented to transmit acoustic energy radially of the duct around the circumference of the enclosure walls. The back-reflected energy is received centrally of the duct and interpreted as a measure of gas entrainment. One specific embodiment employs a conical reflector to direct the transmitted acoustic energy radially of the duct and redirect the reflected energy back to the transducer for reception. A modified embodiment employs a cylindrical ultrasonic transducer for this purpose.

  5. A Spatial Framework for Understanding Population Structure and Admixture.

    PubMed

    Bradburd, Gideon S; Ralph, Peter L; Coop, Graham M

    2016-01-01

    Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build "geogenetic maps," which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix. PMID:26771578

  6. Population admixture and high larval viability among urban toads

    PubMed Central

    Hase, Kazuko; Nikoh, Naruo; Shimada, Masakazu

    2013-01-01

    In terms of evolutionary biology, a population admixture of more than two distinct lineages may lead to strengthened genetic variation through hybridization. However, a population admixture arising from artificial secondary contact poses significant problems in conservation biology. In urban Tokyo, a population admixture has emerged from two lineages of Japanese common toad: native Bufo japonicus formosus and nonnative B. japonicus japonicus, of which the latter was introduced in the early 20th century. To evaluate the degree of genetic disturbance in the admixed population of these two subspecies, we analyzed genotypes of toads distributed within and outside Tokyo by assessing mtDNA and seven microsatellite loci. We found that the introduced B. japonicus japonicus genotype dominates six local populations in the Tokyo admixture zone and was clearly derived from past introgressive hybridization between the two subspecies. These observations were supported by morphological assessments. Furthermore, the average larval survival rate in Tokyo was significantly higher than that outside Tokyo, suggesting that the temporary contribution of introduced toads occurred through introgression. The fitness of toads in urban Tokyo may thus be increasing with the assistance of nonnative individuals. PMID:23789077

  7. Strong selection at MHC in Mexicans since admixture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the major histocompatibility complex (MHC) region Mexicans have excessive African ance...

  8. Worldwide patterns of genomic variation and admixture in gray wolves.

    PubMed

    Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K

    2016-02-01

    The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter-gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. PMID:26680994

  9. A Spatial Framework for Understanding Population Structure and Admixture

    PubMed Central

    Bradburd, Gideon S.; Ralph, Peter L.; Coop, Graham M.

    2016-01-01

    Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build “geogenetic maps,” which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix. PMID:26771578

  10. The transmission/disequilibrium test: History, subdivision, and admixture

    SciTech Connect

    Ewens, W.J.; Spielman, R.S.

    1995-08-01

    Disease association with a genetic marker is often taken as a preliminary indication of linkage with disease susceptibility. However, population subdivision and admixture may lead to diease association even in the absence of linkage. In a previous paper, we described a test for linkage (and linkage disequilibrium) between a genetic marker and disease susceptibility; linkage is detected by this test only if association is also present. This transmission/disequilibrium test (TDT) is carried out with data on transmission of marker alleles from parents heterozygous for the marker alleles to affected offspring. The TDT is a valid test for linkage and association, even when the association is caused by population subdivision and admixture. In the previous paper, we did not explicitly consider the effect of recent history on population structure. Here we extend the previous results by examining in detail the effects of subdivision and admixture, viewed as processes in population history. We describe two models for these processes. For both models, we analyze the properties of (a) the TDT as a test for linkage (and association) between marker and disease and (b) the conventional contingency statistic used with family data to test for population association. We show that the contingency test statistic does not have a {chi}{sup 2} distribution if subdivision or admixture is present. In contrast, the TDT remains a valid {chi}{sub 2} statistic for the linkage hypothesis, regardless of population history. 20 refs., 2 figs., 5 tabs.

  11. Worldwide patterns of genomic variation and admixture in gray wolves

    PubMed Central

    Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M.; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K.

    2016-01-01

    The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter–gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. PMID:26680994

  12. The ecology of entrainment: Foundations of coordinated rhythmic movement

    PubMed Central

    Phillips-Silver, Jessica; Aktipis, C. Athena; Bryant, Gregory A.

    2011-01-01

    Entrainment has been studied in a variety of contexts including music perception, dance, verbal communication and motor coordination more generally. Here we seek to provide a unifying framework that incorporates the key aspects of entrainment as it has been studied in these varying domains. We propose that there are a number of types of entrainment that build upon pre-existing adaptations that allow organisms to perceive stimuli as rhythmic, to produce periodic stimuli, and to integrate the two using sensory feedback. We suggest that social entrainment is a special case of spatiotemporal coordination where the rhythmic signal originates from another individual. We use this framework to understand the function and evolutionary basis for coordinated rhythmic movement and to explore questions about the nature of entrainment in music and dance. The framework of entrainment presented here has a number of implications for the vocal learning hypothesis and other proposals for the evolution of coordinated rhythmic behavior across an array of species. PMID:21776183

  13. Native American Admixture in the Quebec Founder Population

    PubMed Central

    Moreau, Claudia; Lefebvre, Jean-François; Jomphe, Michèle; Bhérer, Claude; Ruiz-Linares, Andres; Vézina, Hélène; Roy-Gagnon, Marie-Hélène; Labuda, Damian

    2013-01-01

    For years, studies of founder populations and genetic isolates represented the mainstream of genetic mapping in the effort to target genetic defects causing Mendelian disorders. The genetic homogeneity of such populations as well as relatively homogeneous environmental exposures were also seen as primary advantages in studies of genetic susceptibility loci that underlie complex diseases. European colonization of the St-Lawrence Valley by a small number of settlers, mainly from France, resulted in a founder effect reflected by the appearance of a number of population-specific disease-causing mutations in Quebec. The purported genetic homogeneity of this population was recently challenged by genealogical and genetic analyses. We studied one of the contributing factors to genetic heterogeneity, early Native American admixture that was never investigated in this population before. Consistent admixture estimates, in the order of one per cent, were obtained from genome-wide autosomal data using the ADMIXTURE and HAPMIX software, as well as with the fastIBD software evaluating the degree of the identity-by-descent between Quebec individuals and Native American populations. These genomic results correlated well with the genealogical estimates. Correlations are imperfect most likely because of incomplete records of Native founders’ origin in genealogical data. Although the overall degree of admixture is modest, it contributed to the enrichment of the population diversity and to its demographic stratification. Because admixture greatly varies among regions of Quebec and among individuals, it could have significantly affected the homogeneity of the population, which is of importance in mapping studies, especially when rare genetic susceptibility variants are in play. PMID:23776491

  14. Entrainment, Drizzle, and the Indirect Effect in Stratiform Clouds

    NASA Technical Reports Server (NTRS)

    Ackerman, Andrew

    2005-01-01

    Activation of some fraction of increased concentrations of sub-micron soluble aerosol particles lead to enhanced cloud droplet concentrations and hence smaller droplets, increasing their total cross sectional area and thus reflecting solar radiation more efficiently (the Twomey, or first indirect, effect). However, because of competition during condensational growth, droplet distributions tend to broaden as numbers increase, reducing the sensitivity of cloud albedo to droplet concentration on the order of 10%. Also, smaller droplets less effectively produce drizzle through collisions and coalescence, and it is widely expected (and found in large-scale models) that decreased precipitation leads to clouds with more cloud water on average (the so-called cloud lifetime, or second indirect, effect). Much of the uncertainty regarding the overall indirect aerosol effect stems from inadequate understanding of such changes in cloud water. Detailed simulations based on FIRE-I, ASTEX, and DYCOMS-II conditions show that suppression of precipitation from increased droplet concentrations leads to increased cloud water only when sufficient precipitation reaches the surface, a condition favored when the overlying air is-humid or droplet concentrations are very low. Otherwise, aerosol induced suppression of precipitation enhances entrainment of overlying dry air, thereby reducing cloud water and diminishing the indirect climate forcing.

  15. Conditions for super-adiabatic droplet growth after entrainment mixing

    NASA Astrophysics Data System (ADS)

    Yang, Fan; Shaw, Raymond; Xue, Huiwen

    2016-07-01

    Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixed parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the "super-adiabatic" growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. The findings have implications for the origin of large cloud droplets that may contribute to onset of collision-coalescence in warm clouds.

  16. Conditions for super-adiabatic droplet growth after entrainment mixing

    DOE PAGES

    Yang, Fan; Shaw, Raymond; Xue, Huiwen

    2016-07-29

    Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixedmore » parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the “super-adiabatic” growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. The findings have implications for the origin of large cloud droplets that may contribute to onset of collision–coalescence in warm clouds.« less

  17. The effect of entrainment on starting vortices

    NASA Astrophysics Data System (ADS)

    Rosi, Giuseppe; Rival, David

    2015-11-01

    Recent work shows that vortex detachment behind accelerating plates coincides with when streamlines enclosing the starting vortex (SV) form a full saddle. In the case of a linearly accelerating plate, it can be shown that vorticity-containing mass, and thus the SV's development scale with only dimensionless towed distance, while the SV's circulation scales with the acceleration rate. This results in shear-layer instabilities whose structure is Reynold-number independent, but whose strength scale with Reynolds number. It is hypothesized that the increased strength of the instabilities promotes entrainment, which causes the formation of the full saddle and thereby detachment to occur at an earlier dimensionless towed distance. To test this hypothesis, a circular plate is linearly accelerated from rest to pinch-off with chord-based Reynolds numbers of 103, 104, and 105 at the midpoint of the motion. Planar PIV data is acquired, from which FTLE and enstrophy fields are calculated. Vortex detachment is identified from the dynamics of the FTLE saddles, while the enstrophy fields are used to calculate both the vorticity-containing mass entering from the shear layer and the mass entrained from the quiescent surroundings.

  18. Stochastic entrainment of a stochastic oscillator.

    PubMed

    Wang, Guanyu; Peskin, Charles S

    2015-01-01

    In this work, we consider a stochastic oscillator described by a discrete-state continuous-time Markov chain, in which the states are arranged in a circle, and there is a constant probability per unit time of jumping from one state to the next in a specified direction around the circle. At each of a sequence of equally spaced times, the oscillator has a specified probability of being reset to a particular state. The focus of this work is the entrainment of the oscillator by this periodic but stochastic stimulus. We consider a distinguished limit, in which (i) the number of states of the oscillator approaches infinity, as does the probability per unit time of jumping from one state to the next, so that the natural mean period of the oscillator remains constant, (ii) the resetting probability approaches zero, and (iii) the period of the resetting signal approaches a multiple, by a ratio of small integers, of the natural mean period of the oscillator. In this distinguished limit, we use analytic and numerical methods to study the extent to which entrainment occurs.

  19. Observing of entrainment using small UAS

    NASA Astrophysics Data System (ADS)

    Martin, S.; Bange, J.; Beyrich, F.

    2012-04-01

    Entrainment processes between the atmospheric boundary layer and the free atmosphere are important concerning vertical exchange of momentum, energy, water vapor, trace gases and aerosol. The transition zone between the convectively mixed boundary layer and the stably stratified free atmosphere is called the entrainment zone (EZ). The EZ restrains the domain of turbulence by a temperature inversion and acts as a lid to pollutants. Measurement flights of the mini meteorological aerial vehicle (M2AV) of the Technische Universität Braunschweig were performed in spring 2011 to determine the capability of the unmanned aerial system (UAS) to measure the structure of the EZ. The campaign took place at the Meteorological Observatory Lindenberg / Richard-Aßmann-Observatory of the German Meteorological Service, which is located close to Berlin. Besides the M2AV flights, standard observations were performed by a 12 m and 99 m tower, a sodar, ceilometer and radiosondes. A tethered balloon with measurement units at six different levels was operated especially for this campaign. The measurements of these systems were used to determine the inversion layer and to capture its diurnal cycle. The talk will be focused on vertical profiles of the M2AV up to the free atmosphere, detailed analysis of spatial series of w'θ' at different altitudes and on vertical profiles of normalized variances of the vertical wind component and the potential temperature.

  20. On the use of crystalline admixtures in cement based construction materials: from porosity reducers to promoters of self healing

    NASA Astrophysics Data System (ADS)

    Ferrara, Liberato; Krelani, Visar; Moretti, Fabio

    2016-08-01

    The project detailed in this paper aims at a thorough characterization of the effects of crystalline admixtures, currently employed as porosity reducing admixtures, on the self-healing capacity of the cementitious composites, i.e. their capacity to completely or partially re-seal cracks and, in case, also exhibit recovery of mechanical properties. The problem has been investigated with reference to both a normal strength concrete (NSC) and a high performance fibre reinforced cementitious composite (HPFRCC). In the latter case, the influence of flow-induced fibre alignment has also been considered in the experimental investigation. With reference to either 3-point (for NSC) or 4-point (for HPFRCC) bending tests performed up to controlled crack opening and up to failure, respectively before and after exposure/conditioning recovery of stiffness and stress bearing capacity has been evaluated to assess the self-healing capacity. In a durability-based design framework, self-healing indices to quantify the recovery of mechanical properties will also be defined. In NSC, crystalline admixtures are able to promote up to 60% of crack sealing even under exposure to open air. In the case of HPFRCCs, which would already feature autogenous healing capacity because of their peculiar mix compositions, the synergy between the dispersed fibre reinforcement and the action of the crystalline admixture has resulted in a likely ‘chemical pre-stressing’ of the same reinforcement, from which the recovery of mechanical performance of the material has greatly benefited, up to levels even higher than the performance of the virgin un-cracked material.

  1. Entrainment rates at the tops of laboratory analogs of cumulus and stratocumulus clouds

    NASA Astrophysics Data System (ADS)

    Górska, Anna; Malinowski, Szymon P.; Fugal, Jacob

    2015-04-01

    We investigate entrainment at tops of laboratory analogs of convective clouds: cumulus and stratocumulus. Cloudy saturated moist air (T ~22 °C) containing droplets of diameters of ~3-10 μm, is introduced into a laboratory cloud chamber of dimensions of 1.0×1.0×1.8 through an opening in the bottom wall. Initialy cloudy air fills ~60 cm thick layer at the bottom. Mixing between the cloud and unsaturated air above (T ~22 °C, RH ~35 %) results in evaporative cooling triggering convection which, in turn, leads to formation of a well mixed layer capperd with a temperature inversion. The temperature jump is about 2 °C within ~30 cm deep layer. Then updrafts are forced through a 30cm high tube extending from the bottom of the chamber. "Strong' updrafts which penetrate the whole inversion layer mimic overshooting cumulus clouds while "weak' updrafts diverging under the inversion simulate stratocumulus clouds. We use a laser sheet technique to image two-dimensional cross sections through the clouds. A specially developed mutiscale Particle Image Velicimetry (PIV) algorithm allows to retrieve 2D velocity fields. Suitable image processing allows to determine cloud-clear air interface in the images. Extracting velocities of cloudy (ui) and environmental (ua) air on both sides of the interface allows us calculate entrainment / detrainment rates: E = -ρa(ua - ui) - entrainment rate D = ρa(ua - ui) - detrainment rate. On the poster we will present fine structures of entraimnet/dertaiment process and discuss similarities and differences in both investigated types of clouds.

  2. Rhythm as a Coordinating Device: Entrainment with Disordered Speech

    ERIC Educational Resources Information Center

    Borrie, Stephanie A.; Liss, Julie M.

    2014-01-01

    Purpose: The rhythmic entrainment (coordination) of behavior during human interaction is a powerful phenomenon, considered essential for successful communication, supporting social and emotional connection, and facilitating sense-making and information exchange. Disruption in entrainment likely occurs in conversations involving those with speech…

  3. The phenotypic legacy of admixture between modern humans and Neanderthals

    PubMed Central

    Simonti, Corinne N.; Vernot, Benjamin; Bastarache, Lisa; Bottinger, Erwin; Carrell, David S.; Chisholm, Rex L.; Crosslin, David R.; Hebbring, Scott J.; Jarvik, Gail P.; Kullo, Iftikhar J.; Li, Rongling; Pathak, Jyotishman; Ritchie, Marylyn D.; Roden, Dan M.; Verma, Shefali S.; Tromp, Gerard; Prato, Jeffrey D.; Bush, William S.; Akey, Joshua M.; Denny, Joshua C.; Capra, John A.

    2016-01-01

    Many modern human genomes retain DNA inherited from interbreeding with archaic hominins, such as Neanderthals, yet the influence of this admixture on human traits is largely unknown. We analyzed the contribution of common Neanderthal variants to over 1,000 electronic health record (EHR)-derived phenotypes in ~28,000 adults of European ancestry. We discovered and replicated associations of Neanderthal alleles with neurological, psychiatric, immunological, and dermatological phenotypes. Neanderthal alleles together explain a significant fraction of the variation in risk for depression and skin lesions resulting from sun exposure (actinic keratosis), and individual Neanderthal alleles are significantly associated with specific human phenotypes, including hypercoagulation and tobacco use. Our results establish that archaic admixture influences disease risk in modern humans, provide hypotheses about the effects of hundreds of Neanderthal haplotypes and demonstrate the utility of EHR data in evolutionary analyses. PMID:26912863

  4. The phenotypic legacy of admixture between modern humans and Neandertals.

    PubMed

    Simonti, Corinne N; Vernot, Benjamin; Bastarache, Lisa; Bottinger, Erwin; Carrell, David S; Chisholm, Rex L; Crosslin, David R; Hebbring, Scott J; Jarvik, Gail P; Kullo, Iftikhar J; Li, Rongling; Pathak, Jyotishman; Ritchie, Marylyn D; Roden, Dan M; Verma, Shefali S; Tromp, Gerard; Prato, Jeffrey D; Bush, William S; Akey, Joshua M; Denny, Joshua C; Capra, John A

    2016-02-12

    Many modern human genomes retain DNA inherited from interbreeding with archaic hominins, such as Neandertals, yet the influence of this admixture on human traits is largely unknown. We analyzed the contribution of common Neandertal variants to over 1000 electronic health record (EHR)-derived phenotypes in ~28,000 adults of European ancestry. We discovered and replicated associations of Neandertal alleles with neurological, psychiatric, immunological, and dermatological phenotypes. Neandertal alleles together explained a significant fraction of the variation in risk for depression and skin lesions resulting from sun exposure (actinic keratosis), and individual Neandertal alleles were significantly associated with specific human phenotypes, including hypercoagulation and tobacco use. Our results establish that archaic admixture influences disease risk in modern humans, provide hypotheses about the effects of hundreds of Neandertal haplotypes, and demonstrate the utility of EHR data in evolutionary analyses. PMID:26912863

  5. Entrainment of neural oscillations as a modifiable substrate of attention.

    PubMed

    Calderone, Daniel J; Lakatos, Peter; Butler, Pamela D; Castellanos, F Xavier

    2014-06-01

    Brain operation is profoundly rhythmic. Oscillations of neural excitability shape sensory, motor, and cognitive processes. Intrinsic oscillations also entrain to external rhythms, allowing the brain to optimize the processing of predictable events such as speech. Moreover, selective attention to a particular rhythm in a complex environment entails entrainment of neural oscillations to its temporal structure. Entrainment appears to form one of the core mechanisms of selective attention, which is likely to be relevant to certain psychiatric disorders. Deficient entrainment has been found in schizophrenia and dyslexia and mounting evidence also suggests that it may be abnormal in attention-deficit/hyperactivity disorder (ADHD). Accordingly, we suggest that studying entrainment in selective-attention paradigms is likely to reveal mechanisms underlying deficits across multiple disorders.

  6. Adsorption of superplasticizer admixtures on alkali-activated slag pastes

    SciTech Connect

    Palacios, M. Houst, Y.F.; Bowen, P.; Puertas, F.

    2009-08-15

    Alkali-activated slag (AAS) binders are obtained by a manufacturing process less energy-intensive than ordinary Portland cement (OPC) and involves lower greenhouse gasses emission. These alkaline cements allow the production of high mechanical strength and durable concretes. In the present work, the adsorption of different superplasticizer admixtures (naphthalene-based, melamine-based and a vinyl copolymer) on the slag particles in AAS pastes using alkaline solutions with different pH values have been studied in detail. The effect of the superplasticizers on the yield stress and plastic viscosity of the AAS and OPC pastes have been also evaluated. The results obtained allowed us to conclude that the adsorption of the superplasticizers on AAS pastes is independent of the pH of the alkaline solutions used and lower than on OPC pastes. However, the effect of the admixtures on the rheological parameters depends directly on the type and dosage of the superplasticizer as well as of the binder used and, in the case of the AAS, on the pH of the alkaline activator solution. In 11.7-pH NaOH-AAS pastes the dosages of the superplasticizers required to attain similar reduction in the yield stress are ten-fold lower than for Portland cement. In this case the superplasticizers studied show a fluidizing effect considerably higher in 11.7-pH NaOH-AAS pastes than in OPC pastes. In 13.6-pH NaOH-AAS pastes, the only admixture observed to affect the rheological parameters is the naphthalene-based admixture due to its higher chemical stability in such extremely alkaline media.

  7. Genetic admixture, self-reported ethnicity, self-estimated admixture, and skin pigmentation among Hispanics and Native Americans.

    PubMed

    Klimentidis, Yann C; Miller, Geoffrey F; Shriver, Mark D

    2009-04-01

    The relationship between ethnicity and biology is of interest to anthropologists, biomedical scientists, and historians in understanding how human groups are constructed. Ethnic self-identification in recently admixed groups such as Hispanics, African Americans, and Native Americans (NA) is likely to be complex due to the heterogeneity in individual admixture proportions and social environments within these groups. This study examines the relationships between self-identified ethnicity, self-estimated admixture proportions, skin pigmentation, and genetic marker estimated admixture proportions. These measures were assessed using questionnaires, skin color measurements, and genotyping of a panel of 76 ancestry informative markers, among 170 Hispanics and NAs from New Mexico, a state known for its complex history of interactions between people of NA and European (EU) ancestry. Results reveal that NAs underestimate their degree of EU admixture, and that Hispanics underestimate their degree of NA admixture. Within Hispanics, genetic-marker estimated admixture is better predicted by forehead skin pigmentation than by self-estimated admixture. We also find that Hispanic individuals self-identified as "half-White, half Hispanic" and "Spanish" have lower levels of NA admixture than those self-identified as "Mexican" and "Mexican American." Such results highlight the interplay between culture and biology in how individuals identify and view themselves, and have implications for how ethnicity and disease risk are assessed in a medical setting. PMID:18951390

  8. Ground-Based Remote Retrievals of Cumulus Entrainment Rates

    SciTech Connect

    Wagner, Timothy J.; Turner, David D.; Berg, Larry K.; Krueger, Steven K.

    2013-07-26

    While fractional entrainment rates for cumulus clouds have typically been derived from airborne observations, this limits the size and scope of available data sets. To increase the number of continental cumulus entrainment rate observations available for study, an algorithm for retrieving them from ground-based remote sensing observations has been developed. This algorithm, called the Entrainment Rate In Cumulus Algorithm (ERICA), uses the suite of instruments at the Southern Great Plains (SGP) site of the United States Department of Energy's Atmospheric Radiation Measurement (ARM) Climate Research Facility as inputs into a Gauss-Newton optimal estimation scheme, in which an assumed guess of the entrainment rate is iteratively adjusted through intercomparison of modeled liquid water path and cloud droplet effective radius to their observed counterparts. The forward model in this algorithm is the Explicit Mixing Parcel Model (EMPM), a cloud parcel model that treats entrainment as a series of discrete entrainment events. A quantified value for measurement uncertainty is also returned as part of the retrieval. Sensitivity testing and information content analysis demonstrate the robust nature of this method for retrieving accurate observations of the entrainment rate without the drawbacks of airborne sampling. Results from a test of ERICA on three months of shallow cumulus cloud events show significant variability of the entrainment rate of clouds in a single day and from one day to the next. The mean value of 1.06 km-¹ for the entrainment rate in this dataset corresponds well with prior observations and simulations of the entrainment rate in cumulus clouds.

  9. Admixture mapping identifies introgressed genomic regions in North American canids.

    PubMed

    vonHoldt, Bridgett M; Kays, Roland; Pollinger, John P; Wayne, Robert K

    2016-06-01

    Hybrid zones typically contain novel gene combinations that can be tested by natural selection in a unique genetic context. Parental haplotypes that increase fitness can introgress beyond the hybrid zone, into the range of parental species. We used the Affymetrix canine SNP genotyping array to identify genomic regions tagged by multiple ancestry informative markers that are more frequent in an admixed population than expected. We surveyed a hybrid zone formed in the last 100 years as coyotes expanded their range into eastern North America. Concomitant with expansion, coyotes hybridized with wolves and some populations became more wolflike, such that coyotes in the northeast have the largest body size of any coyote population. Using a set of 3102 ancestry informative markers, we identified 60 differentially introgressed regions in 44 canines across this admixture zone. These regions are characterized by an excess of exogenous ancestry and, in northeastern coyotes, are enriched for genes affecting body size and skeletal proportions. Further, introgressed wolf-derived alleles have penetrated into Southern US coyote populations. Because no wolves currently exist in this area, these alleles are unlikely to have originated from recent hybridization. Instead, they probably originated from intraspecific gene flow or ancient admixture. We show that grey wolf and coyote admixture has far-reaching effects and, in addition to phenotypically transforming admixed populations, allows for the differential movement of alleles from different parental species to be tested in new genomic backgrounds.

  10. Complex history of admixture between modern humans and Neandertals.

    PubMed

    Vernot, Benjamin; Akey, Joshua M

    2015-03-01

    Recent analyses have found that a substantial amount of the Neandertal genome persists in the genomes of contemporary non-African individuals. East Asians have, on average, higher levels of Neandertal ancestry than do Europeans, which might be due to differences in the efficiency of purifying selection, an additional pulse of introgression into East Asians, or other unexplored scenarios. To better define the scope of plausible models of archaic admixture between Neandertals and anatomically modern humans, we analyzed patterns of introgressed sequence in whole-genome data of 379 Europeans and 286 East Asians. We found that inferences of demographic history restricted to neutrally evolving genomic regions allowed a simple one-pulse model to be robustly rejected, suggesting that differences in selection cannot explain the differences in Neandertal ancestry. We show that two additional demographic models, involving either a second pulse of Neandertal gene flow into the ancestors of East Asians or a dilution of Neandertal lineages in Europeans by admixture with an unknown ancestral population, are consistent with the data. Thus, the history of admixture between modern humans and Neandertals is most likely more complex than previously thought.

  11. Genetic admixture and obesity: recent perspectives and future applications

    PubMed Central

    Fernández, José R.; Pearson, Keith E.; Kell, Kenneth P.; Brown, Michelle M. Bohan

    2013-01-01

    The process of the colonization of the New World that occurred centuries ago served as a natural experiment, creating unique combinations of genetic material in newly formed admixed populations. The identification and genotyping of ancestry informative markers (AIMs) have allowed for the estimation of proportions of ancestral parental populations among individuals in a sample through the genetic admixture approach. These admixture estimates have been used in different ways to understand the genetic contributions to individual variation in obesity and body composition parameters, particularly among diverse admixed groups known to differ in obesity prevalence within the United States. Although progress has been made through the use of genetic admixture approaches, future investigations are needed in order to explore the interaction of environmental factors with the degree of genetic ancestry in individuals. A challenge to confront at this time would be to further stratify and define environments in progressively more granular terms, including nutrients, muscle biology, stress responses at the cellular level, and the social and built environments. PMID:24081225

  12. Complex history of admixture between modern humans and Neandertals.

    PubMed

    Vernot, Benjamin; Akey, Joshua M

    2015-03-01

    Recent analyses have found that a substantial amount of the Neandertal genome persists in the genomes of contemporary non-African individuals. East Asians have, on average, higher levels of Neandertal ancestry than do Europeans, which might be due to differences in the efficiency of purifying selection, an additional pulse of introgression into East Asians, or other unexplored scenarios. To better define the scope of plausible models of archaic admixture between Neandertals and anatomically modern humans, we analyzed patterns of introgressed sequence in whole-genome data of 379 Europeans and 286 East Asians. We found that inferences of demographic history restricted to neutrally evolving genomic regions allowed a simple one-pulse model to be robustly rejected, suggesting that differences in selection cannot explain the differences in Neandertal ancestry. We show that two additional demographic models, involving either a second pulse of Neandertal gene flow into the ancestors of East Asians or a dilution of Neandertal lineages in Europeans by admixture with an unknown ancestral population, are consistent with the data. Thus, the history of admixture between modern humans and Neandertals is most likely more complex than previously thought. PMID:25683119

  13. Admixture mapping identifies introgressed genomic regions in North American canids.

    PubMed

    vonHoldt, Bridgett M; Kays, Roland; Pollinger, John P; Wayne, Robert K

    2016-06-01

    Hybrid zones typically contain novel gene combinations that can be tested by natural selection in a unique genetic context. Parental haplotypes that increase fitness can introgress beyond the hybrid zone, into the range of parental species. We used the Affymetrix canine SNP genotyping array to identify genomic regions tagged by multiple ancestry informative markers that are more frequent in an admixed population than expected. We surveyed a hybrid zone formed in the last 100 years as coyotes expanded their range into eastern North America. Concomitant with expansion, coyotes hybridized with wolves and some populations became more wolflike, such that coyotes in the northeast have the largest body size of any coyote population. Using a set of 3102 ancestry informative markers, we identified 60 differentially introgressed regions in 44 canines across this admixture zone. These regions are characterized by an excess of exogenous ancestry and, in northeastern coyotes, are enriched for genes affecting body size and skeletal proportions. Further, introgressed wolf-derived alleles have penetrated into Southern US coyote populations. Because no wolves currently exist in this area, these alleles are unlikely to have originated from recent hybridization. Instead, they probably originated from intraspecific gene flow or ancient admixture. We show that grey wolf and coyote admixture has far-reaching effects and, in addition to phenotypically transforming admixed populations, allows for the differential movement of alleles from different parental species to be tested in new genomic backgrounds. PMID:27106273

  14. Characteristics of rice husk gasification in an entrained flow reactor.

    PubMed

    Zhao, Yijun; Sun, Shaozeng; Tian, Hongming; Qian, Juan; Su, Fengming; Ling, Feng

    2009-12-01

    Experiments were performed in an entrained flow reactor to better understand the characteristics of biomass gasification. Rice husk was used in this study. Effects of the gasification temperature (700, 800, 900 and 1000 degrees C) and the equivalence ratio in the range of 0.22-0.34 on the biomass gasification and the axial gas distribution in the reactor were studied. The results showed that reactions of CnHm were less important in the gasification process except cracking reactions which occurred at higher temperature. In the oxidization zone, reactions between char and oxygen had a more prevailing role. The optimal gasification temperature of the rice husk could be above 900 degrees C, and the optimal value of ER was 0.25. The gasification process was finished in 1.42 s when the gasification temperature was above 800 degrees C. A first order kinetic model was developed for describing rice husk air gasification characteristics and the relevant kinetic parameters were determined.

  15. Cortical entrainment to music and its modulation by expertise.

    PubMed

    Doelling, Keith B; Poeppel, David

    2015-11-10

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta-theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15-30 Hz)-often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition.

  16. Laboratory Experiments on Convective Entrainment Using a Saline Water Tank

    NASA Astrophysics Data System (ADS)

    Jonker, Harmen J. J.; Jiménez, Maria A.

    2014-06-01

    Entrainment fluxes in a shear-free convective boundary layer have been measured with a saline water tank set-up. The experiments were targeted towards measuring the entrainment behaviour for medium to high Richardson numbers and use a two-layer design, i.e. two stacked non-stratified (neutral) layers with different densities. With laser induced fluorescence (LIF), the entrainment flux of a fluorescent dye is measured for bulk Richardson numbers in the range 30-260. It is proposed that a carefully chosen combination of top-down and bottom-up processes improves the accuracy of LIF-based entrainment observations. The observed entrainment fluxes are about an order of magnitude lower than reported for thermal water tanks: the derived buoyancy entrainment ratio, , is found to be , which is to be compared with for a thermal convection tank (Deardorff et al., J Fluid Mech 100:41-64, 1980). An extensive discussion is devoted to the influence of the Reynolds and Prandtl numbers in laboratory experiments on entrainment.

  17. Cortical entrainment to music and its modulation by expertise.

    PubMed

    Doelling, Keith B; Poeppel, David

    2015-11-10

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta-theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15-30 Hz)-often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition. PMID:26504238

  18. Cortical entrainment to music and its modulation by expertise

    PubMed Central

    Doelling, Keith B.; Poeppel, David

    2015-01-01

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta–theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15–30 Hz)—often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition. PMID:26504238

  19. A Balanced Diet Is Necessary for Proper Entrainment Signals of the Mouse Liver Clock

    PubMed Central

    Hirao, Akiko; Tahara, Yu; Kimura, Ichiro; Shibata, Shigenobu

    2009-01-01

    Background The peripheral circadian clock in mice is entrained not only by light-dark cycles but also by daily restricted feeding schedules. Behavioral and cell culture experiments suggest an increase in glucose level as a factor in such feeding-induced entrainment. For application of feeding-induced entrainment in humans, nutrient content and dietary variations should be considered. Principal Finding To elucidate the food composition necessary for dietary entrainment, we examined whether complete or partial substitution of dietary nutrients affected phase shifts in liver clocks of mice. Compared with fasting mice or ad libitum fed mice, the liver bioluminescence rhythm advanced by 3–4 h on the middle day in Per2::luciferase knock-in mice that were administered a standard mouse diet, i.e. AIN-93M formula [0.6–0.85 g/10 g mouse BW] (composition: 14% casein, 47% cornstarch, 15% gelatinized cornstarch, 10% sugar, 4% soybean oil, and 10% other [fiber, vitamins, minerals, etc.]), for 2 days. When each nutrient was tested alone (100% nutrient), an insignificant weak phase advance was found to be induced by cornstarch and soybean oil, but almost no phase advance was induced by gelatinized cornstarch, high-amylose cornstarch, glucose, sucrose, or casein. A combination of glucose and casein without oil, vitamin, or fiber caused a significant phase advance. When cornstarch in AIN-93M was substituted with glucose, sucrose, fructose, polydextrose, high-amylose cornstarch, or gelatinized cornstarch, the amplitude of phase advance paralleled the increase in blood glucose concentration. Conclusions Our results strongly suggest the following: (1) balanced diets containing carbohydrates/sugars and proteins are good for restricted feeding-induced entrainment of the peripheral circadian clock and (2) a balanced diet that increases blood glucose, but not by sugar alone, is suitable for entrainment. These findings may assist in the development of dietary recommendations for on

  20. On the maximum grain size entrained by photoevaporative winds

    NASA Astrophysics Data System (ADS)

    Hutchison, Mark A.; Laibe, Guillaume; Maddison, Sarah T.

    2016-09-01

    We model the behaviour of dust grains entrained by photoevaporation-driven winds from protoplanetary discs assuming a non-rotating, plane-parallel disc. We obtain an analytic expression for the maximum entrainable grain size in extreme-UV radiation-driven winds, which we demonstrate to be proportional to the mass loss rate of the disc. When compared with our hydrodynamic simulations, the model reproduces almost all of the wind properties for the gas and dust. In typical turbulent discs, the entrained grain sizes in the wind are smaller than the theoretical maximum everywhere but the inner disc due to dust settling.

  1. Flicker Regularity Is Crucial for Entrainment of Alpha Oscillations

    PubMed Central

    Notbohm, Annika; Herrmann, Christoph S.

    2016-01-01

    Previous studies have shown that alpha oscillations (8–13 Hz) in human electroencephalogram (EEG) modulate perception via phase-dependent inhibition. If entrained to an external driving force, inhibition maxima and minima of the oscillation appear more distinct in time and make potential phase-dependent perception predictable. There is an ongoing debate about whether visual stimulation is suitable to entrain alpha oscillations. On the one hand, it has been argued that a series of light flashes results in transient event-related responses (ERPs) superimposed on the ongoing EEG. On the other hand, it has been demonstrated that alpha oscillations become entrained to a series of light flashes if they are presented at a certain temporal regularity. This raises the question under which circumstances a sequence of light flashes causes entrainment, i.e., whether an arrhythmic stream of light flashes would also result in entrainment. Here, we measured detection rates in response to visual targets at two opposing stimulation phases during rhythmic and arrhythmic light stimulation. We introduce a new measure called “behavioral modulation depth” to determine differences in perception. This measure is capable of correcting for inevitable artifacts that occur in visual detection tasks during visual stimulation. The physical concept of entrainment predicts that increased stimulation intensity should produce stronger entrainment. Thus, two experiments with medium (Experiment 1) and high (Experiment 2) stimulation intensity were performed. Data from the first experiment show that the behavioral modulation depth (alpha phase-dependent differences in detection threshold) increases with increasing entrainment of alpha oscillations. Furthermore, individual alpha phase delays of entrained alpha oscillations determine the behavioral modulation depth: the largest behavioral modulation depth can be found if targets presented during the minimum of the entrained oscillation are

  2. Music and emotions: from enchantment to entrainment.

    PubMed

    Vuilleumier, Patrik; Trost, Wiebke

    2015-03-01

    Producing and perceiving music engage a wide range of sensorimotor, cognitive, and emotional processes. Emotions are a central feature of the enjoyment of music, with a large variety of affective states consistently reported by people while listening to music. However, besides joy or sadness, music often elicits feelings of wonder, nostalgia, or tenderness, which do not correspond to emotion categories typically studied in neuroscience and whose neural substrates remain largely unknown. Here we review the similarities and differences in the neural substrates underlying these "complex" music-evoked emotions relative to other more "basic" emotional experiences. We suggest that these emotions emerge through a combination of activation in emotional and motivational brain systems (e.g., including reward pathways) that confer its valence to music, with activation in several other areas outside emotional systems, including motor, attention, or memory-related regions. We then discuss the neural substrates underlying the entrainment of cognitive and motor processes by music and their relation to affective experience. These effects have important implications for the potential therapeutic use of music in neurological or psychiatric diseases, particularly those associated with motor, attention, or affective disturbances. PMID:25773637

  3. Speech entrainment compensates for Broca's area damage.

    PubMed

    Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

    2015-08-01

    Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to SE. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during SE versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of SE to improve speech production and may help select patients for SE treatment. PMID:25989443

  4. Organic Entrainment and Preservation in Volcanic Glasses

    NASA Technical Reports Server (NTRS)

    Wilhelm, Mary Beth; Ojha, Lujendra; Brunner, Anna E.; Dufek, Josef D.; Wray, James Joseph

    2014-01-01

    Unaltered pyroclastic deposits have previously been deemed to have "low" potential for the formation, concentration and preservation of organic material on the Martian surface. Yet volcanic glasses that have solidified very quickly after an eruption may be good candidates for containment and preservation of refractory organic material that existed in a biologic system pre-eruption due to their impermeability and ability to attenuate UV radiation. Analysis using NanoSIMS of volcanic glass could then be performed to both deduce carbon isotope ratios that indicate biologic origin and confirm entrainment during eruption. Terrestrial contamination is one of the biggest barriers to definitive Martian organic identification in soil and rock samples. While there is a greater potential to concentrate organics in sedimentary strata, volcanic glasses may better encapsulate and preserve organics over long time scales, and are widespread on Mars. If volcanic glass from many sites on Earth could be shown to contain biologically derived organics from the original environment, there could be significant implications for the search for biomarkers in ancient Martian environments.

  5. Music and emotions: from enchantment to entrainment.

    PubMed

    Vuilleumier, Patrik; Trost, Wiebke

    2015-03-01

    Producing and perceiving music engage a wide range of sensorimotor, cognitive, and emotional processes. Emotions are a central feature of the enjoyment of music, with a large variety of affective states consistently reported by people while listening to music. However, besides joy or sadness, music often elicits feelings of wonder, nostalgia, or tenderness, which do not correspond to emotion categories typically studied in neuroscience and whose neural substrates remain largely unknown. Here we review the similarities and differences in the neural substrates underlying these "complex" music-evoked emotions relative to other more "basic" emotional experiences. We suggest that these emotions emerge through a combination of activation in emotional and motivational brain systems (e.g., including reward pathways) that confer its valence to music, with activation in several other areas outside emotional systems, including motor, attention, or memory-related regions. We then discuss the neural substrates underlying the entrainment of cognitive and motor processes by music and their relation to affective experience. These effects have important implications for the potential therapeutic use of music in neurological or psychiatric diseases, particularly those associated with motor, attention, or affective disturbances.

  6. Granular motions near the threshold of entrainment

    NASA Astrophysics Data System (ADS)

    Valyrakis, Manousos; Alexakis, athanasios-Theodosios

    2016-04-01

    Our society is continuously impacted by significant weather events many times resulting in catastrophes that interrupt our normal way of life. In the context of climate change and increasing urbanisation these "extreme" hydrologic events are intensified both in magnitude and frequency, inducing costs of the order of billions of pounds. The vast majority of such costs and impacts (even more to developed societies) are due to water related catastrophes such as the geomorphic action of flowing water (including scouring of critical infrastructure, bed and bank destabilisation) and flooding. New tools and radically novel concepts are in need, to enable our society becoming more resilient. This presentation, emphasises the utility of inertial sensors in gaining new insights on the interaction of flow hydrodynamics with the granular surface at the particle scale and for near threshold flow conditions. In particular, new designs of the "smart-sphere" device are discussed with focus on the purpose specific sets of flume experiments, designed to identify the exact response of the particle resting at the bed surface for various below, near and above threshold flow conditions. New sets of measurements are presented for particle entrainment from a Lagrangian viewpoint. Further to finding direct application in addressing real world challenges in the water sector, it is shown that such novel sensor systems can also help the research community (both experimentalists and computational modellers) gain a better insight on the underlying processes governing granular dynamics.

  7. Speech entrainment compensates for Broca's area damage.

    PubMed

    Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

    2015-08-01

    Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to SE. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during SE versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of SE to improve speech production and may help select patients for SE treatment.

  8. Practical handling of AIO admixtures – Guidelines on Parenteral Nutrition, Chapter 10

    PubMed Central

    Mühlebach, S.; Franken, C.; Stanga, Z.

    2009-01-01

    All-in-one admixtures (AIO-admixtures) provide safe, effective and low-risk PN (parenteral nutrition) for practically all indications and applications. Water, energy (carbohydrates and lipids), amino acids, vitamins and trace elements are infused together with PN either as industrially-manufactured AIO admixtures provided as two- or three-chamber bags (shelf life usually more than 12 months) completed with electrolytes and micronutrients where appropriate or as individually compounded ready-to-use AIO admixtures (compounding, usually prepared by a pharmacy on either a daily or weekly basis and stored at 2–8°C). Physico-chemical and microbial stability of an AIO admixture is essential for the safety and effectiveness of patient-specific PN, and its assurance requires specialist pharmaceutical knowledge. The stability should be documented for an application period of 24 (–48) hours. It is advisable to offer a limited selection of different PN regimes in each hospital. For reasons of drug and medication safety, PN admixtures prepared for individual patients must be correctly labelled and specifications for storage conditions must also be followed during transport. Monitoring is required where applicable. Micronutrients are usually administered separately to AIO admixtures. In case compatibility and stability have been well documented trace elements and/or combination preparations including water-soluble or water-soluble/fat soluble vitamin supplements can be added to PN admixtures under strict aseptic conditions. AIO admixtures are usually not used as vehicles for drugs (incompatibilities). PMID:20049073

  9. A comparative efficacy study of photic driving brainwave entrainment technology with a novel form of more direct entrainment

    NASA Astrophysics Data System (ADS)

    Knowles, Richard Thomas

    This exploratory study compared the efficacy of a novel brainwave electromagnetic (EM) entrainment technology against a more conventional technology utilizing the photic-driving technique. Both experimental conditions were also compared with a 7-minute control session that took place immediately before each stimulation session. The Schumann Resonance (SR) frequency was selected as the delivery signal and was chosen because of previous findings suggesting that entrainment to this frequency can often produce transpersonal if not paranormal, experiences in the entrainee, which sometimes resemble remote viewing or out-of-body experiences. A pilot study determined which of two novel entrainment modalities (a copper coil or a 16-solenoid headset) worked most effectively for use with the rest of the study. In the main study, an artificial SR signal at 7.8Hz was delivered during the photic-driving sessions, but a recording of the real-time SR was used to deliver the entrainment signal during sessions devoted to the electromagnetic entrainment modality. Sixteen participants were recruited from the local area, and EEG recordings were acquired via a 32-channel Deymed electroencephalography system. Comparative analyses were performed between the control and experimental portions of each session to assess for efficacy of the novel entrainment modality used, and, in the main study, between the electromagnetic and photic-driving sessions, to assess for differential entrainment efficacy between these groups. A follow-up study was additionally performed primarily to determine whether responders could replicate their entrainment effect from the main study. Results showed that EM entrainment appeared to be possible but is not nearly as robust or reliable as photic driving. Additionally, no profound transpersonal or paranormal experiences were elicited during the course of the study, and, when asked, participants were not able to determine with any degree of success, when the

  10. How coupling determines the entrainment of circadian clocks

    NASA Astrophysics Data System (ADS)

    Bordyugov, G.; Granada, A. E.; Herzel, H.

    2011-08-01

    Autonomous circadian clocks drive daily rhythms in physiology and behaviour. A network of coupled neurons, the suprachiasmatic nucleus (SCN), serves as a robust self-sustained circadian pacemaker. Synchronization of this timer to the environmental light-dark cycle is crucial for an organism's fitness. In a recent theoretical and experimental study it was shown that coupling governs the entrainment range of circadian clocks. We apply the theory of coupled oscillators to analyse how diffusive and mean-field coupling affects the entrainment range of interacting cells. Mean-field coupling leads to amplitude expansion of weak oscillators and, as a result, reduces the entrainment range. We also show that coupling determines the rigidity of the synchronized SCN network, i.e. the relaxation rates upon perturbation. Our simulations and analytical calculations using generic oscillator models help to elucidate how coupling determines the entrainment of the SCN. Our theoretical framework helps to interpret experimental data.

  11. Estimating rates of debris flow entrainment from ground vibrations

    NASA Astrophysics Data System (ADS)

    Kean, J. W.; Coe, J. A.; Coviello, V.; Smith, J. B.; McCoy, S. W.; Arattano, M.

    2015-08-01

    Debris flows generate seismic waves as they travel downslope and can become more dangerous as they entrain sediment along their path. We present field observations that show a systematic relation between the magnitude of seismic waves and the amount of erodible sediment beneath the flow. Specifically, we observe that a debris flow traveling along a channel filled initially with sediment 0.34 m thick generates about 2 orders of magnitude less spectral power than a similar-sized flow over the same channel without sediment fill. We adapt a model from fluvial seismology to explain this observation and then invert it to estimate the level of bed sediment (and rate of entrainment) beneath a passing series of surges. Our estimates compare favorably with previous direct measurements of entrainment rates at the site, suggesting the approach may be a new indirect way to obtain rare field constraints needed to test models of debris flow entrainment.

  12. A genomewide admixture mapping panel for Hispanic/Latino populations.

    PubMed

    Mao, Xianyun; Bigham, Abigail W; Mei, Rui; Gutierrez, Gerardo; Weiss, Ken M; Brutsaert, Tom D; Leon-Velarde, Fabiola; Moore, Lorna G; Vargas, Enrique; McKeigue, Paul M; Shriver, Mark D; Parra, Esteban J

    2007-06-01

    Admixture mapping (AM) is a promising method for the identification of genetic risk factors for complex traits and diseases showing prevalence differences among populations. Efficient application of this method requires the use of a genomewide panel of ancestry-informative markers (AIMs) to infer the population of origin of chromosomal regions in admixed individuals. Genomewide AM panels with markers showing high frequency differences between West African and European populations are already available for disease-gene discovery in African Americans. However, no such a map is yet available for Hispanic/Latino populations, which are the result of two-way admixture between Native American and European populations or of three-way admixture of Native American, European, and West African populations. Here, we report a genomewide AM panel with 2,120 AIMs showing high frequency differences between Native American and European populations. The average intermarker genetic distance is ~1.7 cM. The panel was identified by genotyping, with the Affymetrix GeneChip Human Mapping 500K array, a population sample with European ancestry, a Mesoamerican sample comprising Maya and Nahua from Mexico, and a South American sample comprising Aymara/Quechua from Bolivia and Quechua from Peru. The main criteria for marker selection were both high information content for Native American/European ancestry (measured as the standardized variance of the allele frequencies, also known as "f value") and small frequency differences between the Mesoamerican and South American samples. This genomewide AM panel will make it possible to apply AM approaches in many admixed populations throughout the Americas. PMID:17503334

  13. A Genomewide Admixture Mapping Panel for Hispanic/Latino Populations

    PubMed Central

    Mao, Xianyun ; Bigham, Abigail W. ; Mei, Rui ; Gutierrez, Gerardo ; Weiss, Ken M. ; Brutsaert, Tom D. ; Leon-Velarde, Fabiola ; Moore, Lorna G. ; Vargas, Enrique ; McKeigue, Paul M. ; Shriver, Mark D. ; Parra, Esteban J. 

    2007-01-01

    Admixture mapping (AM) is a promising method for the identification of genetic risk factors for complex traits and diseases showing prevalence differences among populations. Efficient application of this method requires the use of a genomewide panel of ancestry-informative markers (AIMs) to infer the population of origin of chromosomal regions in admixed individuals. Genomewide AM panels with markers showing high frequency differences between West African and European populations are already available for disease-gene discovery in African Americans. However, no such a map is yet available for Hispanic/Latino populations, which are the result of two-way admixture between Native American and European populations or of three-way admixture of Native American, European, and West African populations. Here, we report a genomewide AM panel with 2,120 AIMs showing high frequency differences between Native American and European populations. The average intermarker genetic distance is ∼1.7 cM. The panel was identified by genotyping, with the Affymetrix GeneChip Human Mapping 500K array, a population sample with European ancestry, a Mesoamerican sample comprising Maya and Nahua from Mexico, and a South American sample comprising Aymara/Quechua from Bolivia and Quechua from Peru. The main criteria for marker selection were both high information content for Native American/European ancestry (measured as the standardized variance of the allele frequencies, also known as “f value”) and small frequency differences between the Mesoamerican and South American samples. This genomewide AM panel will make it possible to apply AM approaches in many admixed populations throughout the Americas. PMID:17503334

  14. Complex Patterns of Genomic Admixture within Southern Africa

    PubMed Central

    Petersen, Desiree C.; Libiger, Ondrej; Tindall, Elizabeth A.; Hardie, Rae-Anne; Hannick, Linda I.; Glashoff, Richard H.; Mukerji, Mitali; Fernandez, Pedro; Haacke, Wilfrid; Schork, Nicholas J.; Hayes, Vanessa M.

    2013-01-01

    Within-population genetic diversity is greatest within Africa, while between-population genetic diversity is directly proportional to geographic distance. The most divergent contemporary human populations include the click-speaking forager peoples of southern Africa, broadly defined as Khoesan. Both intra- (Bantu expansion) and inter-continental migration (European-driven colonization) have resulted in complex patterns of admixture between ancient geographically isolated Khoesan and more recently diverged populations. Using gender-specific analysis and almost 1 million autosomal markers, we determine the significance of estimated ancestral contributions that have shaped five contemporary southern African populations in a cohort of 103 individuals. Limited by lack of available data for homogenous Khoesan representation, we identify the Ju/'hoan (n = 19) as a distinct early diverging human lineage with little to no significant non-Khoesan contribution. In contrast to the Ju/'hoan, we identify ancient signatures of Khoesan and Bantu unions resulting in significant Khoesan- and Bantu-derived contributions to the Southern Bantu amaXhosa (n = 15) and Khoesan !Xun (n = 14), respectively. Our data further suggests that contemporary !Xun represent distinct Khoesan prehistories. Khoesan assimilation with European settlement at the most southern tip of Africa resulted in significant ancestral Khoesan contributions to the Coloured (n = 25) and Baster (n = 30) populations. The latter populations were further impacted by 170 years of East Indian slave trade and intra-continental migrations resulting in a complex pattern of genetic variation (admixture). The populations of southern Africa provide a unique opportunity to investigate the genomic variability from some of the oldest human lineages to the implications of complex admixture patterns including ancient and recently diverged human lineages. PMID:23516368

  15. Whistler Solitons in Plasma with Anisotropic Hot Electron Admixture

    NASA Technical Reports Server (NTRS)

    Khazanov, G. V.; Krivorutsky, E. N.; Gallagher, D. L.

    1999-01-01

    The longitudinal and transverse modulation instability of whistler waves in plasma, with a small admixture of hot anisotropic electrons, is discussed. If the hot particles temperature anisotropy is positive, it is found that, in such plasma, longitudinal perturbations can lead to soliton formation for frequencies forbidden in cold plasma. The soliton is enriched by hot particles. The frequency region unstable to transverse modulation in cold plasma in the presence of hot electrons is divided by stable domains. For both cases the role of hot electrons is more significant for whistlers with smaller frequencies.

  16. Interethnic admixture and the evolution of Latin American populations.

    PubMed

    Salzano, Francisco Mauro; Sans, Mónica

    2014-03-01

    A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues. PMID:24764751

  17. Interethnic admixture and the evolution of Latin American populations

    PubMed Central

    Salzano, Francisco Mauro; Sans, Mónica

    2014-01-01

    A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues. PMID:24764751

  18. Activation analysis of admixtures in certain semiconductive materials

    NASA Technical Reports Server (NTRS)

    Artyukhin, P. I.; Gilbert, E. P.; Pronin, V. A.

    1978-01-01

    The use of extractions and chromatographic operations to separate macrobases, and to divide elements into groups convenient for gamma-spectrometric analysis is discussed. Methods are described for the activation detection of some impurities in silicon, arsenic, thallium, and trichloromethylsilane, on the basis of the extraction properties of bis(2-chlorethyl ether) and dimethylbenzylalkylammonium chloride. A schematic diagram of the extraction separation of elements-admixture is presented showing the aqueous and organic phases. The content percentage of the various elements are given in tables.

  19. A parameterization of the depth of the entrainment zone

    NASA Technical Reports Server (NTRS)

    Boers, Reinout

    1989-01-01

    A theory of the parameterization of the entrainment zone depth has been developed based on conservation of energy. This theory suggests that the normalized entrainment zone depth is proportional to the inverse square root of the Richardson number. A comparison of this theory with atmospheric observations indicates excellent agreement. It does not adequately predict the laboratory data, although it improves on parcel theory, which is based on a momentum balance.

  20. How Entrainers Enhance Solubility in Supercritical Carbon Dioxide.

    PubMed

    Shimizu, Seishi; Abbott, Steven

    2016-04-21

    Supercritical carbon dioxide (scCO2) on its own can be a relatively poor solvent. However, the addition at relatively modest concentration of "entrainers", simple solvent molecules such as ethanol or acetone, can provide a significant boost in solubility, thereby enabling its industrial use. However, how entrainers work is still under debate; without an unambiguous explanation, it is hard to optimize entrainers for any specific solute. This paper demonstrates that a fundamental, assumption-free statistical thermodynamic theory, the Kirkwood-Buff (KB) theory, can provide an unambiguous explanation of the entrainer effect through an analysis of published experimental data. The KB theory shows that a strong solute-entrainer interaction accounts for the solubility enhancement, while CO2 density increase and/or CO2-entrainer interactions, which have been assumed widely in the literature, do not account for solubilization. This conclusion, despite the limited completeness of available data, is demonstrably robust; this can be shown by an order-of-magnitude analysis based upon the theory, and can be demonstrated directly through a public-domain "app", which has been developed to implement the theory.

  1. Entraining in trout: a behavioural and hydrodynamic analysis.

    PubMed

    Przybilla, Anja; Kunze, Sebastian; Rudert, Alexander; Bleckmann, Horst; Brücker, Christoph

    2010-09-01

    Rheophilic fish commonly experience unsteady flows and hydrodynamic perturbations. Instead of avoiding turbulent zones though, rheophilic fish often seek out these zones for station holding. A behaviour associated with station holding in running water is called entraining. We investigated the entraining behaviour of rainbow trout swimming in the wake of a D-shaped cylinder or sideways of a semi-infinite flat plate displaying a rounded leading edge. Entraining trout moved into specific positions close to and sideways of the submerged objects, where they often maintained their position without corrective body and/or fin motions. To identify the hydrodynamic mechanism of entraining, the flow characteristics around an artificial trout placed at the position preferred by entraining trout were analysed. Numerical simulations of the 3-D unsteady flow field were performed to obtain the unsteady pressure forces. Our results suggest that entraining trout minimise their energy expenditure during station holding by tilting their body into the mean flow direction at an angle, where the resulting lift force and wake suction force cancel out the drag. Small motions of the caudal and/or pectoral fins provide an efficient way to correct the angle, such that an equilibrium is even reached in case of unsteadiness imposed by the wake of an object. PMID:20709926

  2. Synthesis of Entrainment and Detrainment formulations for Convection Parameterizations

    NASA Astrophysics Data System (ADS)

    Siebesma, P.

    2015-12-01

    Mixing between convective clouds and its environment, usually parameterized in terms of entrainment and detrainment, are among the most important processes that determine the strength of the climate model sensitivity. This notion has led to a renaissance of research in exploring the mechanisms of these mixing processes and, as a result, to a wide range of seemingly different parameterized formulations. In this study we are aiming to synthesize these results as to offer a solid framework for use in parameterized formulations of convection. Detailed LES analyses in which clouds are subsampled according to their size show that entrainment rates are inversely proportional to the typical cloud radius, in accordance with original entraining plume models. These results can be shown analytically to be consistent with entrainment rate formulations of cloud ensembles that decrease inversely proportional with height, by making only mild assumptions on the shape of the associated cloud size distribution. In addition there are additional dependencies of the entrainment rates on the environmental thermodynamics such as the relative humidity and stability but these are of second order. In contrast detrainment rates do depend to first order on the environmental thermodynamics such as relative humidity and stability. This can be understood by realizing that i) the details of the cloud size distribution do depend on these environmental factors and ii) that detrainment rates have a much stronger dependency on the shape of the cloud size distribution than entrainment rates.

  3. Autosomal Admixture Levels Are Informative About Sex Bias in Admixed Populations

    PubMed Central

    Goldberg, Amy; Verdu, Paul; Rosenberg, Noah A.

    2014-01-01

    Sex-biased admixture has been observed in a wide variety of admixed populations. Genetic variation in sex chromosomes and functions of quantities computed from sex chromosomes and autosomes have often been examined to infer patterns of sex-biased admixture, typically using statistical approaches that do not mechanistically model the complexity of a sex-specific history of admixture. Here, expanding on a model of Verdu and Rosenberg (2011) that did not include sex specificity, we develop a model that mechanistically examines sex-specific admixture histories. Under the model, multiple source populations contribute to an admixed population, potentially with their male and female contributions varying over time. In an admixed population descended from two source groups, we derive the moments of the distribution of the autosomal admixture fraction from a specific source population as a function of sex-specific introgression parameters and time. Considering admixture processes that are constant in time, we demonstrate that surprisingly, although the mean autosomal admixture fraction from a specific source population does not reveal a sex bias in the admixture history, the variance of autosomal admixture is informative about sex bias. Specifically, the long-term variance decreases as the sex bias from a contributing source population increases. This result can be viewed as analogous to the reduction in effective population size for populations with an unequal number of breeding males and females. Our approach suggests that it may be possible to use the effect of sex-biased admixture on autosomal DNA to assist with methods for inference of the history of complex sex-biased admixture processes. PMID:25194159

  4. Physicochemical compatibility of nebulizable drug admixtures containing colistimethate and tobramycin.

    PubMed

    Wollstadt, A; Krämer, I; Kamin, W

    2013-09-01

    Inhalation therapy with nebulizable antibiotic drugs is a mainstay in treating Pseudomonas aeruginosa infections in cystic fibrosis patients. The combination of tobramycin and colistin was found to be superior to monotherapy in killing P. aeruginosa in biofilms. The simultaneous inhalation of tobramycin and colistin might be an option to increase the compliance of patients. The objective of this in-vitro study was to determine whether admixtures of inhalation solutions containing colistin methanesulfonate (CMS) and tobramycin are physicochemically compatible. Physical compatibility was determined by measuring pH and osmolality. Chemical compatibility was determined by testing the antibiotic activity of the mixtures by the pharmacopoeial microbiological assay and comparing the results to those of standard solutions. Samples were analyzed immediately after mixing and after 24 h. Values of pH and osmolality remained unchanged and in physiologically acceptable ranges. Neither for colistin methanesulfonate (CMS) nor for tobramycin losses of antibiotic potency were registered at any time. Admixtures of nebulizer solutions containing CMS and tobramycin were shown to be physicochemically compatible. Further investigations are needed to determine whether drug delivery is affected by mixing the nebulizer solutions to ensure that simultaneous inhalation is recommendable. PMID:24147342

  5. Management increases genetic diversity of honey bees via admixture.

    PubMed

    Harpur, Brock A; Minaei, Shermineh; Kent, Clement F; Zayed, Amro

    2012-09-01

    The process of domestication often brings about profound changes in levels of genetic variation in animals and plants. The honey bee, Apis mellifera, has been managed by humans for centuries for both honey and wax production and crop pollination. Human management and selective breeding are believed to have caused reductions in genetic diversity in honey bee populations, thereby contributing to the global declines threatening this ecologically and economically important insect. However, previous studies supporting this claim mostly relied on population genetic comparisons of European and African (or Africanized) honey bee races; such conclusions require reassessment given recent evidence demonstrating that the honey bee originated in Africa and colonized Europe via two independent expansions. We sampled honey bee workers from two managed populations in North America and Europe as well as several old-world progenitor populations in Africa, East and West Europe. Managed bees had highly introgressed genomes representing admixture between East and West European progenitor populations. We found that managed honey bees actually have higher levels of genetic diversity compared with their progenitors in East and West Europe, providing an unusual example whereby human management increases genetic diversity by promoting admixture. The relationship between genetic diversity and honey bee declines is tenuous given that managed bees have more genetic diversity than their progenitors and many viable domesticated animals.

  6. Disordered speech disrupts conversational entrainment: a study of acoustic-prosodic entrainment and communicative success in populations with communication challenges.

    PubMed

    Borrie, Stephanie A; Lubold, Nichola; Pon-Barry, Heather

    2015-01-01

    Conversational entrainment, a pervasive communication phenomenon in which dialogue partners adapt their behaviors to align more closely with one another, is considered essential for successful spoken interaction. While well-established in other disciplines, this phenomenon has received limited attention in the field of speech pathology and the study of communication breakdowns in clinical populations. The current study examined acoustic-prosodic entrainment, as well as a measure of communicative success, in three distinctly different dialogue groups: (i) healthy native vs. healthy native speakers (Control), (ii) healthy native vs. foreign-accented speakers (Accented), and (iii) healthy native vs. dysarthric speakers (Disordered). Dialogue group comparisons revealed significant differences in how the groups entrain on particular acoustic-prosodic features, including pitch, intensity, and jitter. Most notably, the Disordered dialogues were characterized by significantly less acoustic-prosodic entrainment than the Control dialogues. Further, a positive relationship between entrainment indices and communicative success was identified. These results suggest that the study of conversational entrainment in speech pathology will have essential implications for both scientific theory and clinical application in this domain.

  7. Disordered speech disrupts conversational entrainment: a study of acoustic-prosodic entrainment and communicative success in populations with communication challenges

    PubMed Central

    Borrie, Stephanie A.; Lubold, Nichola; Pon-Barry, Heather

    2015-01-01

    Conversational entrainment, a pervasive communication phenomenon in which dialogue partners adapt their behaviors to align more closely with one another, is considered essential for successful spoken interaction. While well-established in other disciplines, this phenomenon has received limited attention in the field of speech pathology and the study of communication breakdowns in clinical populations. The current study examined acoustic-prosodic entrainment, as well as a measure of communicative success, in three distinctly different dialogue groups: (i) healthy native vs. healthy native speakers (Control), (ii) healthy native vs. foreign-accented speakers (Accented), and (iii) healthy native vs. dysarthric speakers (Disordered). Dialogue group comparisons revealed significant differences in how the groups entrain on particular acoustic–prosodic features, including pitch, intensity, and jitter. Most notably, the Disordered dialogues were characterized by significantly less acoustic-prosodic entrainment than the Control dialogues. Further, a positive relationship between entrainment indices and communicative success was identified. These results suggest that the study of conversational entrainment in speech pathology will have essential implications for both scientific theory and clinical application in this domain. PMID:26321996

  8. Effects of Different Mineral Admixtures on the Properties of Fresh Concrete

    PubMed Central

    Nuruddin, Muhammad Fadhil; Shafiq, Nasir

    2014-01-01

    This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer. PMID:24701196

  9. How important is intraspecific genetic admixture to the success of colonising populations?

    EPA Science Inventory

    Genetic admixture of divergent lineages is increasingly suspected to play an important role in the success of colonizing populations. This has become a particularly prominent theme in the literature on biological invasions, where admixture is now commonly proposed as an important...

  10. Corrosion inhibitive admixtures for concrete (A review of the current state of the art)

    SciTech Connect

    Incorvia, M.J.

    1996-12-01

    Corrosion inhibitive admixtures, chemicals added to the concrete mixture to decrease the corrosion activity of the steel reinforcement, are an easy, cost-effective method for corrosion protection. This paper will review some of the issues related to the corrosion process and to the use of corrosion inhibitive admixtures to extend the service life of steel reinforced structures. The principle cause of corrosion damage to steel reinforced concrete, even high quality concrete, is chloride ion attack. To perform properly an inhibitive admixture must provide protection against chloride induced corrosion. Corrosion inhibitive admixtures provide protection by two mechanisms: (1) a chloride screening mechanism which prolongs the time it takes for chloride to reach the surface of the metal, and (2) an interfacial process where protection is provided by decreasing the corrosion activity at the reinforcing steel surface. The classes of admixtures which prolong the time it takes for chlorides to reach the surface of the reinforcing bars are: hydrophobic materials, pozzolanic materials (e.g. silica fume, fly ash, etc.), and superplasticizers. Interfacial corrosion inhibitive admixtures provide protection by decreasing the corrosion activity by a thermodynamic or a kinetic process or both. The science and technology of corrosion inhibitive admixtures is a developing area, and as such, universally accepted testing procedures have not been established. For the more recently developed admixtures, long duration field exposure test data are not yet available.

  11. Recombination of haplotypes leads to biased estimates of admixture proportions in human populations

    SciTech Connect

    Chakraborty, R.; Smouse, P.E.

    1988-05-01

    A population formed by genetic admixture of two or more source populations may exhibit considerable linkage disequilibrium between genetic loci. In the presence of recombination, this linkage disequilibrium declines with time, a fact that is often ignored when considering haplotypes of closely linked systems (e.g., Gm serum group (gamma globulins), HLA and, more recently, restriction fragment length polymorphisms). Recombination alters haplotype frequencies over time, and the haplotype-derived measures of admixture proportions from haplotype frequencies in generations following the admixture event become progressively more biased. The direction and extent of this bias can be predicted only when the history of admixture is known. Numerical illustration suggests that this bias is problematic whenever rt > 0.05, where r is the recombination rate between linked loci and t is the time (in generations) that has elapsed since the admixture extent. In general, even the haplotype frequencies defined by multiple restriction fragment length polymorphisms should be used with caution for admixture analysis. When recombination rates or the time since admixture are not precisely known, it is advantageous to consider each restriction fragment length polymorphism site separately for admixture analysis.

  12. Effects of different mineral admixtures on the properties of fresh concrete.

    PubMed

    Khan, Sadaqat Ullah; Nuruddin, Muhammad Fadhil; Ayub, Tehmina; Shafiq, Nasir

    2014-01-01

    This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer.

  13. Effects of different mineral admixtures on the properties of fresh concrete.

    PubMed

    Khan, Sadaqat Ullah; Nuruddin, Muhammad Fadhil; Ayub, Tehmina; Shafiq, Nasir

    2014-01-01

    This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer. PMID:24701196

  14. The Emerging Role of Admixture in the Pharmacogenetics of Puerto Rican Hispanics

    PubMed Central

    Duconge, Jorge; Ruaño, Gualberto

    2011-01-01

    Admixture is of great relevance to the clinical application of pharmacogenetics and personalized medicine. Preliminary findings in Puerto Ricans further substantiate the argument for admixture as a critical covariate in a customized DNA-guided warfarin dosing algorithm. To this purpose, a genome-wide approach that incorporates admixture as an independent predictor of dose variability in DNA-guided algorithms has been postulated. Admixture is expected to be able to reveal some relevant associations in the genetic epidemiology of Hispanics and will be indispensable to assure that pharmacogenomic research can be pursued in such mixed populations. Consequently, the clinical utility of knowing an individual’s genotype before initiating drug treatment in Puerto Ricans, and Hispanics in general, will finally be untangled by developing a “Genetic Prescription Model” that takes admixture into consideration. This approach will help lead physicians and patients to their desired treatment goal, resulting in more effective healthcare in admixed people. PMID:23227441

  15. Entrainment and deposition modeling of liquid films with applications for BWR fuel rod dryout

    NASA Astrophysics Data System (ADS)

    Ratnayake, Ruwan Kumara

    While best estimate computer codes provide the licensing basis for nuclear power facilities, they also serve as analytical tools in overall plant and component design procedures. An ideal best estimate code would comprise of universally applicable mechanistic models for all its components. However, due to the limited understanding in these specific areas, many of the models and correlations used in these codes reflect high levels of empiricism. As a result, the use of such models is strictly limited to the range of parameters within which the experiments have been conducted. Disagreements between best estimate code predictions and experimental results are often explained by the mechanistic inadequacies of embedded models. Significant mismatches between calculated and experimental critical power values are common observations in the analyses of Boiling Water Reactors (BWR). Based on experimental observations and calculations, these mismatches are attributed to the additional entrainment and deposition caused by spacer grids in BWR fuel assemblies. In COBRA-TF (Coolant Boiling in Rod Arrays-Two Fluid); a state of the art industrial best estimate code, these disagreements are hypothesized to occur due the absence of an appropriate spacer grid model. In this thesis, development of a suitably detailed spacer grid model and integrating it to COBRA-TF is documented. The new spacer grid model is highly mechanistic so that the applicability of it is not seriously affected by geometric variations in different spacer grid designs. COBRA-TF (original version) simulations performed on single tube tests and BWR rod bundles with spacer grids showed that single tube predictions were more accurate than those of the rod bundles. This observation is understood to arise from the non-availability of a suitable spacer grid model in COBRA-TF. Air water entrainment experiments were conducted in a test section simulating two adjacent BWR sub channels to visualize the flow behavior at

  16. Cortical entrainment of human hypoglossal motor unit activities

    PubMed Central

    Laine, Christopher M.; Nickerson, Laura A.

    2012-01-01

    Output from the primary motor cortex contains oscillations that can have frequency-specific effects on the firing of motoneurons (MNs). Whereas much is known about the effects of oscillatory cortical drive on the output of spinal MN pools, considerably less is known about the effects on cranial motor nuclei, which govern speech/oromotor control. Here, we investigated cortical input to one such motor pool, the hypoglossal motor nucleus (HMN), which controls muscles of the tongue. We recorded intramuscular genioglossus electromyogram (EMG) and scalp EEG from healthy adult subjects performing a tongue protrusion task. Cortical entrainment of HMN population activity was assessed by measuring coherence between EEG and multiunit EMG activity. In addition, cortical entrainment of individual MN firing activity was assessed by measuring phase locking between single motor unit (SMU) action potentials and EEG oscillations. We found that cortical entrainment of multiunit activity was detectable within the 15- to 40-Hz frequency range but was inconsistent across recordings. By comparison, cortical entrainment of SMU spike timing was reliable within the same frequency range. Furthermore, this effect was found to be intermittent over time. Our study represents an important step in understanding corticomuscular synchronization in the context of human oromotor control and is the first study to document SMU entrainment by cortical oscillations in vivo. PMID:22049332

  17. Simulating entrainment and particle fluxes in stratified estuaries

    SciTech Connect

    Jensen, A.; Jirka, G.; Lion, L.W.; Brunk, B.

    1999-04-01

    Settling and entrainment are the dominant processes governing noncohesive particle concentration throughout the water column of salt-wedge estuaries. Determination of the relative contribution of these transport processes is complicated by vertical gradients in turbulence and fluid density. A differential-turbulence column (DTC) was designed to simulate a vertical section of a natural water column. With satisfactory characterization of turbulence dissipation and saltwater entrainment, the DTC facilitates controlled studies of suspended particles under estuarine conditions. The vertical decay of turbulence in the DTC was found to obey standard scaling law relations when the characteristic length scale for turbulence in the apparatus was incorporated. The entrainment rate of a density interface also followed established grid-stirred turbulence scaling laws. These relations were used to model the change in concentration of noncohesive particles above a density interface. Model simulations and experimental data from the DTC were consistent over the range of conditions encountered in natural salt-wedge estuaries. Results suggest that when the ratio of entrainment rate to particle settling velocity is small, sedimentation is the dominant transport process, while entrainment becomes significant as the ratio increases.

  18. Transport, Evolution and Entrainment of Asian Dust/Pollution into the Pacific Marine Boundary

    NASA Astrophysics Data System (ADS)

    Clarke, A. D.; McNaughton, C. S.; Kapustin, V.; Vetter, O.; Dibb, J. E.; Anderson, B. E.; Browell, E. V.; Carmichael, G.; Landing, B.

    2007-05-01

    Various airborne and ship based studies over the past several years have allowed us to measure Asian dust and pollution aerosol from near its source to locations up to 10,000km downwind where it was entrained into the marine boundary layer (MBL). Dust was found to accumulate up to half of the soluble species such as sulfate and nitrate during passage through pollution regions in Asia before being lofted into the free troposphere near Japan. At times, transport in the free troposphere included regions of subsidence in high pressure regions that brought these "rivers" of dust and pollution down to the top of the MBL. Shipboard measurements and lidar data indicated both clear air entrainment and convective activity, associated with the passage of low pressure systems, facilitated dust transport through the inversion. High temperature volatilization of particles in the MBL up to 900C was used to remove most sulfates, nitrates, carbon and sea-salt to leave only dust measured and sized by an optical particle counter. These shipboard data and concurrent chemical measurements revealed the relation between entrainment of pollution and dust into the MBL associated with passage of high pressure systems. Subsequent passage of low pressure systems also revealed scavenging and removal of aerosol through precipitation to the ocean surface. This process appears to be a common removal pathway for dust over the Pacific and a mechanism for supplying the ocean surface with soluble iron and aluminum to the ocean surface. Measurements in the free troposphere and MBL also captured various aspects of these processes. Airborne missions flown north of Hawaii during the NASA PEM-Tropics and IMPEX missions characterized the vertical structure of subsiding dust and pollution. In-flight mapping of the dust/pollution layers and structure using the NASA Langley DIAL LIDAR show a sloping, subsiding Asian air-mass entraining into the marine boundary layer (MBL). In-situ measurements of the aerosol

  19. Aeolian Induced Erosion and Particle Entrainment

    NASA Technical Reports Server (NTRS)

    Saint, Brandon

    2007-01-01

    The Granular Physics Department at The Kennedy Space Center is addressing the problem of erosion on the lunar surface. The early stages of research required an instrument that would produce erosion at a specific rate with a specific sample variation. This paper focuses on the development and experimental procedures to measure and record erosion rates. This was done with the construction of an open air wind tunnel, and examining the relationship between airflow and particle motion.

  20. Impact of admixtures on the hydration kinetics of Portland cement

    SciTech Connect

    Cheung, J.; Jeknavorian, A.; Roberts, L.; Silva, D.

    2011-12-15

    Most concrete produced today includes either chemical additions to the cement, chemical admixtures in the concrete, or both. These chemicals alter a number of properties of cementitious systems, including hydration behavior, and it has been long understood by practitioners that these systems can differ widely in response to such chemicals. In this paper the impact on hydration of several classes of chemicals is reviewed with an emphasis on the current understanding of interactions with cement chemistry. These include setting retarders, accelerators, and water reducing dispersants. The ability of the chemicals to alter the aluminate-sulfate balance of cementitious systems is discussed with a focus on the impact on silicate hydration. As a key example of this complex interaction, unusual behavior sometimes observed in systems containing high calcium fly ash is highlighted.

  1. Interethnic variability and admixture in Latin America--social implications.

    PubMed

    Salzano, Francisco M

    2004-09-01

    Past and present attempts to classify and characterize the human biological variability are examined, considering the race concept, ethnic identification problems, assortative mating based on ethnicity, and historical genetics. In relation to the latter, a review is made of the methods presently available for admixture quantification and of previous studies aimed at the characterization of the parental continental contributions to Latin American populations, with emphasis in global evaluations of the Costa Rican and Brazilian gene pools. Finally, the question of racism and discrimination is considered, including the relation between human rights and affirmative actions. The right to equal opportunity should be strictly respected. Biological inequality has nothing to do with the ethical principle that someone's position in a given society should be an accurate reflection of her/his individual ability.

  2. Interethnic variability and admixture in Latin America--social implications.

    PubMed

    Salzano, Francisco M

    2004-09-01

    Past and present attempts to classify and characterize the human biological variability are examined, considering the race concept, ethnic identification problems, assortative mating based on ethnicity, and historical genetics. In relation to the latter, a review is made of the methods presently available for admixture quantification and of previous studies aimed at the characterization of the parental continental contributions to Latin American populations, with emphasis in global evaluations of the Costa Rican and Brazilian gene pools. Finally, the question of racism and discrimination is considered, including the relation between human rights and affirmative actions. The right to equal opportunity should be strictly respected. Biological inequality has nothing to do with the ethical principle that someone's position in a given society should be an accurate reflection of her/his individual ability. PMID:17361535

  3. Used cooking oil as a green chemical admixture in concrete

    NASA Astrophysics Data System (ADS)

    Salmia, B.; Che Muda, Zakaria; Ashraful Alam, Md; Sidek, L. M.; Hidayah, B.

    2013-06-01

    According to National Statistics Approximately 1.35 billion gallons of used oil are generated yearly. With the increasing of the concrete usage, a more cost effective and economic new type of admixtures may give positive impacts on the Malaysian construction building as well as worldwide concrete usage. To objective of this is study is to investigate the effect of used cooking oil in terms of slump test, compressive strength test and rebound hammer. By adding the used cooking oil to the concrete, it increases the slump value from 4% to 72%. And the compressive strength have an increment from 1% to 16.8%. The used cooking oil obtains the optimum contribution to the concrete mix proportion of containing used cooking oil of 1.50% from the cement content. The result of used cooking oil from experimental program of slump value and compressive strength proved that used cooking oil have positive effects on replacement of commercially available superplasticizer.

  4. Testing Central and Inner Asian admixture among contemporary Hungarians.

    PubMed

    Bíró, András; Fehér, Tibor; Bárány, Gusztáv; Pamjav, Horolma

    2015-03-01

    Historically, the Carpathian Basin was the final destination for many nomadic peoples who migrated westward from Inner and Central Asia towards Europe. Proto-Hungarians (Steppe Magyars) were among those who came from the East, the Eurasian Steppe in the early middle ages. In order to detect the paternal genetic contribution from nomadic Steppe tribes, we tested 966 samples from Central Asian (Uzbekistan, Kazakhstan), Inner Asian (Mongolians and Buryats in Mongolia) and Hungarian-speaking European (Hungarian, Sekler and Csango) populations. We constructed median-joining networks of certain haplogroups in Hungarian-speaking European, and Altaic-speaking Central and Inner Asian populations. We estimated that the possible paternal genetic contribution from the above described populations among contemporary Hungarian speaking populations ranged between 5% and 7.4%. It is lowest among Hungarians from Hungary (5.1%), while higher among Hungarian-speaking groups in Romania, notably Sekler (7.4%) and Csango (6.3%). However, these results represent only an upper limit. Actual Central/Inner Asian admixture might be somewhat lower as some of the related lineages may have come from a common third source. The main haplogroups responsible for the Central/Inner Asian admixture among Hungarians are J2*-M172 (xM47, M67, M12), J2-L24, R1a-Z93; Q-M242 and E-M78. Earlier studies showed very limited Uralic genetic influence among Hungarians, and based on the present study, Altaic/Turkic genetic contribution is also not significant, although significantly higher than the Uralic one. The conclusion of this study is that present-day Hungarian speakers are genetically very similar to neighbouring populations, isolated Hungarian speaking groups having relatively higher presence of Central and Inner Asian genetic elements. At the same time, the reliable historical and genetic conclusions require an extension of the study to a significantly larger database with deep haplogroup resolution

  5. Testing Central and Inner Asian admixture among contemporary Hungarians.

    PubMed

    Bíró, András; Fehér, Tibor; Bárány, Gusztáv; Pamjav, Horolma

    2015-03-01

    Historically, the Carpathian Basin was the final destination for many nomadic peoples who migrated westward from Inner and Central Asia towards Europe. Proto-Hungarians (Steppe Magyars) were among those who came from the East, the Eurasian Steppe in the early middle ages. In order to detect the paternal genetic contribution from nomadic Steppe tribes, we tested 966 samples from Central Asian (Uzbekistan, Kazakhstan), Inner Asian (Mongolians and Buryats in Mongolia) and Hungarian-speaking European (Hungarian, Sekler and Csango) populations. We constructed median-joining networks of certain haplogroups in Hungarian-speaking European, and Altaic-speaking Central and Inner Asian populations. We estimated that the possible paternal genetic contribution from the above described populations among contemporary Hungarian speaking populations ranged between 5% and 7.4%. It is lowest among Hungarians from Hungary (5.1%), while higher among Hungarian-speaking groups in Romania, notably Sekler (7.4%) and Csango (6.3%). However, these results represent only an upper limit. Actual Central/Inner Asian admixture might be somewhat lower as some of the related lineages may have come from a common third source. The main haplogroups responsible for the Central/Inner Asian admixture among Hungarians are J2*-M172 (xM47, M67, M12), J2-L24, R1a-Z93; Q-M242 and E-M78. Earlier studies showed very limited Uralic genetic influence among Hungarians, and based on the present study, Altaic/Turkic genetic contribution is also not significant, although significantly higher than the Uralic one. The conclusion of this study is that present-day Hungarian speakers are genetically very similar to neighbouring populations, isolated Hungarian speaking groups having relatively higher presence of Central and Inner Asian genetic elements. At the same time, the reliable historical and genetic conclusions require an extension of the study to a significantly larger database with deep haplogroup resolution

  6. Entrainment in High-Velocity, High Temperature Plasma Jets Part I: Experimental Results

    SciTech Connect

    Fincke, J.R.; Crawford, D.M.; Snyder, S.C.; Swank, W.D.; Haggard, D.C.; Williamson, R.L.

    2002-03-27

    The development of a high-velocity, high-temperature argon plasma jet issuing into air has been investigated. In particular the entrainment of the surrounding air, its effect on the temperature and velocity profiles and the subsequent mixing and dissociation of oxygen has been examined in detail. The total concentration of oxygen and the velocity and temperature profiles in the jet were obtained from an enthalpy probe. High-resolution Thomson scattering provided an independent measure of plasma velocity and temperature, validating enthalpy probe measurements and providing non-intrusive measurements near the nozzle exit. The concentration of atomic oxygen was obtained from two-photon Laser Induced Fluorescence (LIF). Molecular oxygen concentration and temperature was obtained from Coherent Anti-Stokes Raman Spectroscopy (CARS). It was found that both the incompleteness of mixing at the molecular scale and the rate of oxygen dissociation and recombination effects jet behavior.

  7. Potent social synchronization can override photic entrainment of circadian rhythms.

    PubMed

    Fuchikawa, Taro; Eban-Rothschild, Ada; Nagari, Moshe; Shemesh, Yair; Bloch, Guy

    2016-01-01

    Circadian rhythms in behaviour and physiology are important for animal health and survival. Studies with individually isolated animals in the laboratory have consistently emphasized the dominant role of light for the entrainment of circadian rhythms to relevant environmental cycles. Although in nature interactions with conspecifics are functionally significant, social signals are typically not considered important time-givers for the animal circadian clock. Our results challenge this view. By studying honeybees in an ecologically relevant context and using a massive data set, we demonstrate that social entrainment can be potent, may act without direct contact with other individuals and does not rely on gating the exposure to light. We show for the first time that social time cues stably entrain the clock, even in animals experiencing conflicting photic and social environmental cycles. These findings add to the growing appreciation for the importance of studying circadian rhythms in ecologically relevant contexts. PMID:27210069

  8. Potent social synchronization can override photic entrainment of circadian rhythms.

    PubMed

    Fuchikawa, Taro; Eban-Rothschild, Ada; Nagari, Moshe; Shemesh, Yair; Bloch, Guy

    2016-01-01

    Circadian rhythms in behaviour and physiology are important for animal health and survival. Studies with individually isolated animals in the laboratory have consistently emphasized the dominant role of light for the entrainment of circadian rhythms to relevant environmental cycles. Although in nature interactions with conspecifics are functionally significant, social signals are typically not considered important time-givers for the animal circadian clock. Our results challenge this view. By studying honeybees in an ecologically relevant context and using a massive data set, we demonstrate that social entrainment can be potent, may act without direct contact with other individuals and does not rely on gating the exposure to light. We show for the first time that social time cues stably entrain the clock, even in animals experiencing conflicting photic and social environmental cycles. These findings add to the growing appreciation for the importance of studying circadian rhythms in ecologically relevant contexts.

  9. On robustness of phase resetting to cell division under entrainment.

    PubMed

    Ahmed, Hafiz; Ushirobira, Rosane; Efimov, Denis

    2015-12-21

    The problem of phase synchronization for a population of genetic oscillators (circadian clocks, synthetic oscillators, etc.) is considered in this paper, taking into account a cell division process and a common entrainment input in the population. The proposed analysis approach is based on the Phase Response Curve (PRC) model of an oscillator (the first order reduced model obtained for the linearized system and inputs with infinitesimal amplitude). The occurrence of cell division introduces state resetting in the model, placing it in the class of hybrid systems. It is shown that without common entraining input in all oscillators, the cell division acts as a disturbance causing phase drift, while the presence of entrainment guarantees boundedness of synchronization phase errors in the population. The performance of the obtained solutions is demonstrated via computer experiments for two different models of circadian/genetic oscillators (Neurospora׳s circadian oscillation model and the repressilator).

  10. On robustness of phase resetting to cell division under entrainment.

    PubMed

    Ahmed, Hafiz; Ushirobira, Rosane; Efimov, Denis

    2015-12-21

    The problem of phase synchronization for a population of genetic oscillators (circadian clocks, synthetic oscillators, etc.) is considered in this paper, taking into account a cell division process and a common entrainment input in the population. The proposed analysis approach is based on the Phase Response Curve (PRC) model of an oscillator (the first order reduced model obtained for the linearized system and inputs with infinitesimal amplitude). The occurrence of cell division introduces state resetting in the model, placing it in the class of hybrid systems. It is shown that without common entraining input in all oscillators, the cell division acts as a disturbance causing phase drift, while the presence of entrainment guarantees boundedness of synchronization phase errors in the population. The performance of the obtained solutions is demonstrated via computer experiments for two different models of circadian/genetic oscillators (Neurospora׳s circadian oscillation model and the repressilator). PMID:26463679

  11. Potent social synchronization can override photic entrainment of circadian rhythms

    PubMed Central

    Fuchikawa, Taro; Eban-Rothschild, Ada; Nagari, Moshe; Shemesh, Yair; Bloch, Guy

    2016-01-01

    Circadian rhythms in behaviour and physiology are important for animal health and survival. Studies with individually isolated animals in the laboratory have consistently emphasized the dominant role of light for the entrainment of circadian rhythms to relevant environmental cycles. Although in nature interactions with conspecifics are functionally significant, social signals are typically not considered important time-givers for the animal circadian clock. Our results challenge this view. By studying honeybees in an ecologically relevant context and using a massive data set, we demonstrate that social entrainment can be potent, may act without direct contact with other individuals and does not rely on gating the exposure to light. We show for the first time that social time cues stably entrain the clock, even in animals experiencing conflicting photic and social environmental cycles. These findings add to the growing appreciation for the importance of studying circadian rhythms in ecologically relevant contexts. PMID:27210069

  12. Saturation point representation of cloud-top entrainment instability

    NASA Technical Reports Server (NTRS)

    Boers, Reinout

    1991-01-01

    Cloud-top entrainment instability was investigated using a mixing line analysis. Mixing time scales are closely related to the actual size of the parcel, so that local instabilities are largely dependent on the scales of mixing near the cloud top. Given a fixed transport velocity, variation over a small range of parcel length scales (parcel mixing velocities) turns an energy-producing mixing process into an energy-consuming mixing process. It is suggested that a single criterion for cloud-top entrainment instability will not be found due to the role of at least three factors operating more or less independently; the stability of the mixing line, the entrainment speed, and the strength of the internal boundary-layer circulation.

  13. The Complex Admixture History and Recent Southern Origins of Siberian Populations

    PubMed Central

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-01-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere. PMID:26993256

  14. The Complex Admixture History and Recent Southern Origins of Siberian Populations.

    PubMed

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-07-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere.

  15. The Complex Admixture History and Recent Southern Origins of Siberian Populations.

    PubMed

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-07-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere. PMID:26993256

  16. The relationship between European genetic admixture and body composition among Hispanics and Native Americans.

    PubMed

    Klimentidis, Y C; Miller, G F; Shriver, M D

    2009-01-01

    Previous studies have shown a relationship between health-related phenotypes and the degree of African, European, or Native American genetic admixture, indicating that there may be a genetic component to these phenotypes. However, these relationships may be driven to a large extent by the environmental differences that co-vary with admixture differences between and within groups. In this study, we examine the relationship between genetic admixture and two phenotypic measurements that are potentially related to health: body mass index (BMI) and percent body fat (PBF). In addition to admixture proportions, we attempt to assess the influence of some environmental covariates by examining how the phenotypes vary with self-reported household income, education of parents, and physical activity level. Genetic, anthropometric, and environmental data were collected from 170 self-reported Hispanic and Native American university students in Albuquerque, NM. We examine the relationships between genetic admixture, phenotype, and environment in both the full sample, as well as in Hispanics and Native Americans separately. Among Hispanics, we find no significant relationship between genetic admixture and body composition. Among Native Americans, despite a small sample size, we find a statistically significant, negative relationship between European genetic admixture and PBF and BMI, after adjusting for other predictor variables. We compare our findings to previous research, and discuss their implications for understanding health disparities within and between ethnic groups.

  17. Fluctuations of a receding contact line near the entrainment transition

    NASA Astrophysics Data System (ADS)

    Bico, Jose; Delon, Giles; Fermigier, Marc

    2004-11-01

    We study experimentally the fluctuations of a contact line receding on a plane solid substrate. The contact line is perturbed by localized defects and we follow the relaxation of perturbations induced by these defects, as a function of the mean contact line speed and wavelengths characteristic of the perturbations. We compare our results with theoretical predictions by Golestanian and Raphael showing a divergence of the relaxation time at the entrainment transition (when the receding velocity exceeds a critical value, the liquid is entrained by the solid).

  18. Evidence for Little Shallow Entrainment in Starting Mantle Plumes

    NASA Astrophysics Data System (ADS)

    Lohmann, F. C.; Phipps Morgan, J.; Hort, M.

    2005-12-01

    Basalts from intraplate or hotspot ocean islands show distinct geochemical signatures. Their diversity in composition is generally believed to result from the upwelling plume entraining shallow mantle material during ascent, while potentially also entraining other deep regions of the mantle. Here we present results from analogue laboratory experiments and numerical modelling that there is evidence for little shallow entrainment into ascending mantle plumes, i.e. most of the plume signature is inherited from the source. We conducted laboratory experiments using glucose syrup contaminated with glass beads to visualize fluid flow and origin. The plume is initiated by heating from below or by injecting hot, uncontaminated syrup. Particle movement is captured by a CCD camera. In our numerical experiments we solve the Stokes equations for a viscous fluid at infinite Prandtl number with passive tracer particles being used to track fluid flow and entrainment rates, simulating laboratory as well as mantle conditions. In both analogue experiments and numerical models we observe the classical plume structure being embedded in a `sheath' of material from the plume source region that retains little of the original temperature anomaly of the plume source. Yet, this sheath ascends in the `slipstream' of the plume at speeds close to the ascent speed of the plume head, and effectively prevents the entrainment of surrounding material into the plume head or plume tail. We find that the source region is most effectively sampled by an ascending plume and that compositional variations in the source region are preserved during plume ascent. The plume center and plume sheath combined are composed of up to 85% source material. However, there is also evidence of significant entrainment of up to 30% of surrounding material into the outer layers of the plume sheath. Entrainment rates are found to be influenced by mantle composition and structure, with the radial viscosity profile of the

  19. Population admixture, biological invasions and the balance between local adaptation and inbreeding depression.

    PubMed

    Verhoeven, Koen J F; Macel, Mirka; Wolfe, Lorne M; Biere, Arjen

    2011-01-01

    When previously isolated populations meet and mix, the resulting admixed population can benefit from several genetic advantages, including increased genetic variation, the creation of novel genotypes and the masking of deleterious mutations. These admixture benefits are thought to play an important role in biological invasions. In contrast, populations in their native range often remain differentiated and frequently suffer from inbreeding depression owing to isolation. While the advantages of admixture are evident for introduced populations that experienced recent bottlenecks or that face novel selection pressures, it is less obvious why native range populations do not similarly benefit from admixture. Here we argue that a temporary loss of local adaptation in recent invaders fundamentally alters the fitness consequences of admixture. In native populations, selection against dilution of the locally adapted gene pool inhibits unconstrained admixture and reinforces population isolation, with some level of inbreeding depression as an expected consequence. We show that admixture is selected against despite significant inbreeding depression because the benefits of local adaptation are greater than the cost of inbreeding. In contrast, introduced populations that have not yet established a pattern of local adaptation can freely reap the benefits of admixture. There can be strong selection for admixture because it instantly lifts the inbreeding depression that had built up in isolated parental populations. Recent work in Silene suggests that reduced inbreeding depression associated with post-introduction admixture may contribute to enhanced fitness of invasive populations. We hypothesize that in locally adapted populations, the benefits of local adaptation are balanced against an inbreeding cost that could develop in part owing to the isolating effect of local adaptation itself. The inbreeding cost can be revealed in admixing populations during recent invasions.

  20. Observing Entrainment Processes Using a Small Unmanned Aerial Vehicle: A Feasibility Study

    NASA Astrophysics Data System (ADS)

    Martin, Sabrina; Beyrich, Frank; Bange, Jens

    2014-03-01

    Measurement flights with the meteorological mini aerial vehicle (MAV) were performed in spring 2011 to assess the capability of an unmanned aerial vehicle (UAV) to measure the structure of the transition zone between the convective boundary layer and the stably stratified free atmosphere. The campaign took place at the Meteorological Observatory Lindenberg/Richard-Aßmann-Observatory of the German Meteorological Service. Besides the MAV flights, observations were made from a 12-m and a 99-m tower, a sodar, two ceilometers, radiosondes, and a tethered balloon with sensor packages at six different levels. MAV measurements were intentionally combined with remote sensing systems. The height range of the entrainment zone as well as its diurnal cycle were provided by the remote sensing instruments. The UAV provided the high-resolution in situ data of temperature and wind for the study of turbulent processes. It is shown that the MAV is able to maintain constant altitude with very small deviations—a pre-requisite to study processes inside the often quite thin entrainment zone and that MAV high-resolution wind and temperature measurements allow for very detailed studies of the fine structure of the atmosphere and thus for the identification of quite local and/or short-duration processes such as overshooting thermals or downward intrusions of warm air. Spatial series measured by the MAV during horizontal flights show turbulent exchange of heat in short turbulent bursts at heights close to and within the entrainment zone. Scaled vertical profiles of vertical velocity, potential temperature variance, and sensible heat flux confirm the general shape found by previous measurements and numerical studies.

  1. Lexical Entrainment and Lexical Differentiation in Reference Phrase Choice

    ERIC Educational Resources Information Center

    Van Der Wege, Mija M.

    2009-01-01

    Speakers reuse prior references to objects when choosing reference phrases, a phenomenon known as lexical entrainment. One explanation is that speakers want to maintain a set of previously established referential precedents. Speakers may also contrast any new referents against this previously established set, thereby avoiding applying the same…

  2. Suppression of competing speech through entrainment of cortical oscillations.

    PubMed

    Horton, Cort; D'Zmura, Michael; Srinivasan, Ramesh

    2013-06-01

    People are highly skilled at attending to one speaker in the presence of competitors, but the neural mechanisms supporting this remain unclear. Recent studies have argued that the auditory system enhances the gain of a speech stream relative to competitors by entraining (or "phase-locking") to the rhythmic structure in its acoustic envelope, thus ensuring that syllables arrive during periods of high neuronal excitability. We hypothesized that such a mechanism could also suppress a competing speech stream by ensuring that syllables arrive during periods of low neuronal excitability. To test this, we analyzed high-density EEG recorded from human adults while they attended to one of two competing, naturalistic speech streams. By calculating the cross-correlation between the EEG channels and the speech envelopes, we found evidence of entrainment to the attended speech's acoustic envelope as well as weaker yet significant entrainment to the unattended speech's envelope. An independent component analysis (ICA) decomposition of the data revealed sources in the posterior temporal cortices that displayed robust correlations to both the attended and unattended envelopes. Critically, in these components the signs of the correlations when attended were opposite those when unattended, consistent with the hypothesized entrainment-based suppressive mechanism. PMID:23515789

  3. The neurochemical basis of photic entrainment of the circadian pacemaker

    NASA Technical Reports Server (NTRS)

    Rea, Michael A.; Buckley, Becky; Lutton, Lewis M.

    1992-01-01

    Circadian rhythmicity in mammals is controlled by the action of a light-entrainable hypothalamus, in association with two cell clusters known as the supra chiasmatic nuclei (SCN). In the absence of temporal environmental clues, this pacemaker continues to measure time by an endogenous mechanism (clock), driving biochemical, physiological, and behavioral rhythms that reflect the natural period of the pacemaker oscillation. This endogenous period usually differs slightly from 24 hours (i.e., circadian). When mammals are maintained under a 24 hour light-dark (LD) cycle, the pacemaker becomes entrained such that the period of the pacemaker oscillation matches that of the LD cycle. Potentially entraining photic information is conveyed to the SCN via a direct retinal projection, the retinohypothalamic tract (RHT). RHT neurotransmission is thought to be mediated by the release of excitatory amino acids (EAA) in the SCN. In support of this hypothesis, recent experiments using nocturnal rodents have shown that EAA antagonists block the effects of light on pacemaker-driven behavioral rhythms, and attenuate light induced gene expression in SCN cells. An understanding of the neurochemical basis of the photic entrainment process would facilitate the development of pharmacological strategies for maintaining synchrony among shift workers in environments, such as the Space Station, which provide unreliable or conflicting temporal photic clues.

  4. Attempted entrainment of circus movement tachycardias by ventricular stimulation.

    PubMed

    Saoudi, N C; Castellanos, A; Zaman, L; Portillo, B; Schwartz, A; Myerburg, R J

    1986-01-01

    Entrainment was attempted while pacing the right ventricle in 12 patients with circus movement tachycardias. At the onset of stimulation eight patients had short episodes of intraventricular and atrioventricular dissociation during which the paced impulses activated the various ventricular recording sites (right and left), but did not reach the atria. The latter occurred because the ventricular electrograms were recorded from parts of the ventricles which were not essential components of the reentry circuit. Relatively long (greater than 5 s) runs of entrainment were not possible in any case because of the relatively prompt termination of the tachycardias. Whereas in three patients this was due to the abrupt appearance of retrograde block in the accessory pathway, in nine patients it happened when the sequential, anterograde and retrograde, penetration of the AV node resulted in AV nodal block of the subsequent, reentering atrial impulse. The findings in this study showed that, with the methodology used, entrainment of circus movement tachycardias by ventricular stimulation had to be defined conceptually, by the fulfillment of requirements which did not include its occurrence for at least 5 seconds. Furthermore, the results also suggested that entrainment and tachycardia termination were best demonstrated by a technique which allowed the emission of the first stimulus in a constant (late) moment of the cycle, with deliverance of one additional stimulus at the same cycle length in successive pacing runs.

  5. Queueing-Based Synchronization and Entrainment for Synthetic Gene Oscillators

    NASA Astrophysics Data System (ADS)

    Mather, William; Butzin, Nicholas; Hochendoner, Philip; Ogle, Curtis

    Synthetic gene oscillators have been a major focus of synthetic biology research since the beginning of the field 15 years ago. They have proven to be useful both for biotechnological applications as well as a testing ground to significantly develop our understanding of the design principles behind synthetic and native gene oscillators. In particular, the principles governing synchronization and entrainment of biological oscillators have been explored using a synthetic biology approach. Our work combines experimental and theoretical approaches to specifically investigate how a bottleneck for protein degradation, which is present in most if not all existing synthetic oscillators, can be leveraged to robustly synchronize and entrain biological oscillators. We use both the terminology and mathematical tools of queueing theory to intuitively explain the role of this bottleneck in both synchronization and entrainment, which extends prior work demonstrating the usefulness of queueing theory in synthetic and native gene circuits. We conclude with an investigation of how synchronization and entrainment may be sensitive to the presence of multiple proteolytic pathways in a cell that couple weakly through crosstalk. This work was supported by NSF Grant #1330180.

  6. A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population.

    PubMed

    Downie, Jonathan M; Tashi, Tsewang; Lorenzo, Felipe Ramos; Feusier, Julie Ellen; Mir, Hyder; Prchal, Josef T; Jorde, Lynn B; Koul, Parvaiz A

    2016-01-01

    The Kashmiri population is an ethno-linguistic group that resides in the Kashmir Valley in northern India. A longstanding hypothesis is that this population derives ancestry from Jewish and/or Greek sources. There is historical and archaeological evidence of ancient Greek presence in India and Kashmir. Further, some historical accounts suggest ancient Hebrew ancestry as well. To date, it has not been determined whether signatures of Greek or Jewish admixture can be detected in the Kashmiri population. Using genome-wide genotyping and admixture detection methods, we determined there are no significant or substantial signs of Greek or Jewish admixture in modern-day Kashmiris. The ancestry of Kashmiri Tibetans was also determined, which showed signs of admixture with populations from northern India and west Eurasia. These results contribute to our understanding of the existing population structure in northern India and its surrounding geographical areas.

  7. A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population

    PubMed Central

    Tashi, Tsewang; Lorenzo, Felipe Ramos; Feusier, Julie Ellen; Mir, Hyder

    2016-01-01

    The Kashmiri population is an ethno-linguistic group that resides in the Kashmir Valley in northern India. A longstanding hypothesis is that this population derives ancestry from Jewish and/or Greek sources. There is historical and archaeological evidence of ancient Greek presence in India and Kashmir. Further, some historical accounts suggest ancient Hebrew ancestry as well. To date, it has not been determined whether signatures of Greek or Jewish admixture can be detected in the Kashmiri population. Using genome-wide genotyping and admixture detection methods, we determined there are no significant or substantial signs of Greek or Jewish admixture in modern-day Kashmiris. The ancestry of Kashmiri Tibetans was also determined, which showed signs of admixture with populations from northern India and west Eurasia. These results contribute to our understanding of the existing population structure in northern India and its surrounding geographical areas. PMID:27490348

  8. Admixture enhanced controlled low-strength material for direct underwater injection with minimal cross-contamination

    SciTech Connect

    Hepworth, H.K.; Davidson, J.S.; Hooyman, J.L.

    1997-03-01

    Commercially available admixtures have been developed for placing traditional concrete products under water. This paper evaluates adapting anti-washout admixture (AWA) and high range water reducing admixture (HRWRA) products to enhance controlled low-strength materials (CLSMs) for underwater placement. A simple experimental scale model (based on dynamic and geometric similitude) of typical grout pump emplacement equipment has been developed to determine the percentage of cementing material washed out. The objective of this study was to identify proportions of admixtures and underwater CLSM emplacement procedures which would minimize the cross-contamination of the displaced water while maintaining the advantages of CLSM. Since the displaced water from radioactively contaminated systems must be subsequently treated prior to release to the environment, the amount of cross-contamination is important for cases in which cementing material could form hard sludges in a water treatment facility and contaminate the in-place CLSM stabilization medium.

  9. Synergic entrainment of Drosophila's circadian clock by light and temperature.

    PubMed

    Yoshii, Taishi; Vanin, Stefano; Costa, Rodolfo; Helfrich-Förster, Charlotte

    2009-12-01

    Daily light and temperature cycles are considered the most important zeitgebers for circadian clocks in many organisms. The influence of each single zeitgeber on the clock has been well studied, but little is known about any synergistic effects of both zeitgebers on the clock. In nature, light and temperature show characteristic daily oscillations with the temperature rising during the light phase and reaching its maximum in the late afternoon. Here, we studied behavioral and molecular rhythms in Drosophila melanogaster under simulated natural low light-dark (LD) and temperature (T) cycles that typically occur during the September equinox. Wild-type flies were either subjected to simulated LD or T cycles alone or to a combination of both. Behavioral rhythms and molecular rhythms in the different clock neurons were assessed under the 3 different conditions. Although behavioral rhythms entrained to all conditions, the rhythms were most robust under the combination of LD and T cycles. The clock neurons responded differently to LD and T cycles. Some were not entrained by T cycles alone; others were only slightly entrained by LD cycles alone. The amplitude of the molecular cycling was not different between LD alone and T cycles alone; but LD alone could set the pacemaker neurons to similar phases, whereas T cycles alone could not. The combination of the 2 zeitgebers entrained all clock neurons not only with similar phase but also enhanced the amplitude of Timeless cycling in the majority of cells. Our results show that the 2 zeitgebers synergistically entrain behavioral and molecular rhythms of Drosophila melanogaster. PMID:19926805

  10. Entrained neural oscillations in multiple frequency bands comodulate behavior

    PubMed Central

    Henry, Molly J.; Herrmann, Björn

    2014-01-01

    Our sensory environment is teeming with complex rhythmic structure, to which neural oscillations can become synchronized. Neural synchronization to environmental rhythms (entrainment) is hypothesized to shape human perception, as rhythmic structure acts to temporally organize cortical excitability. In the current human electroencephalography study, we investigated how behavior is influenced by neural oscillatory dynamics when the rhythmic fluctuations in the sensory environment take on a naturalistic degree of complexity. Listeners detected near-threshold gaps in auditory stimuli that were simultaneously modulated in frequency (frequency modulation, 3.1 Hz) and amplitude (amplitude modulation, 5.075 Hz); modulation rates and types were chosen to mimic the complex rhythmic structure of natural speech. Neural oscillations were entrained by both the frequency modulation and amplitude modulation in the stimulation. Critically, listeners’ target-detection accuracy depended on the specific phase–phase relationship between entrained neural oscillations in both the 3.1-Hz and 5.075-Hz frequency bands, with the best performance occurring when the respective troughs in both neural oscillations coincided. Neural-phase effects were specific to the frequency bands entrained by the rhythmic stimulation. Moreover, the degree of behavioral comodulation by neural phase in both frequency bands exceeded the degree of behavioral modulation by either frequency band alone. Our results elucidate how fluctuating excitability, within and across multiple entrained frequency bands, shapes the effective neural processing of environmental stimuli. More generally, the frequency-specific nature of behavioral comodulation effects suggests that environmental rhythms act to reduce the complexity of high-dimensional neural states. PMID:25267634

  11. Airborne observation of mixing across the entrainment zone during PARADE 2011

    NASA Astrophysics Data System (ADS)

    Berkes, F.; Hoor, P.; Bozem, H.; Kunkel, D.; Sprenger, M.; Henne, S.

    2015-10-01

    This study presents the analysis of the structure and air mass characteristics of the lower atmosphere during the field campaign PARADE (PArticles and RAdicals: Diel observations of the impact of urban and biogenic Emissions) on Mount Kleiner Feldberg in southwestern Germany during late summer 2011. We analysed measurements of meteorological variables (temperature, moisture, pressure, wind speed and direction) from radio soundings and of chemical tracers (carbon dioxide, ozone) from aircraft measurements. We focus on the thermodynamic and dynamic properties, that control the chemical distribution of atmospheric constituents in the boundary layer. We show that the evolution of tracer profiles of CO2 and O3 indicate mixing across the inversion layer (or entrainment zone). This finding is supported by the analysis of tracer-tracer correlations which are indicative for mixing and the relation of tracer profiles in relation to the evolution of the boundary layer height deduced from radio soundings. The study shows the relevance of entrainment processes for the lower troposphere in general and specifically that the tracer-tracer correlation method can be used to identify mixing and irreversible exchange processes across the inversion layer.

  12. Airborne observation of mixing across the entrainment zone during PARADE 2011

    NASA Astrophysics Data System (ADS)

    Berkes, Florian; Hoor, Peter; Bozem, Heiko; Kunkel, Daniel; Sprenger, Michael; Henne, Stephan

    2016-05-01

    This study presents the analysis of the structure and air mass characteristics of the lower atmosphere during the field campaign PARADE (PArticles and RAdicals: Diel observations of the impact of urban and biogenic Emissions) on Mount Kleiner Feldberg in southwestern Germany during late summer 2011. We analysed measurements of meteorological variables (temperature, moisture, pressure, wind speed and direction) from radio soundings and of chemical tracers (carbon dioxide, ozone) from aircraft measurements. We focus on the thermodynamic and dynamic properties that control the chemical distribution of atmospheric constituents in the boundary layer. We show that the evolution of tracer profiles of CO2 and O3 indicate mixing across the inversion layer (or entrainment zone). This finding is supported by the analysis of tracer-tracer correlations which are indicative for mixing and the relation of tracer profiles in relation to the evolution of the boundary layer height deduced from radio soundings. The study shows the relevance of entrainment processes for the lower troposphere in general and specifically that the tracer-tracer correlation method can be used to identify mixing and irreversible exchange processes across the inversion layer.

  13. Saltation thresholds and entrainment of fine particles at Earth and Martian pressures

    NASA Technical Reports Server (NTRS)

    Leach, Rodman; Greeley, Ronald; Pollack, James

    1989-01-01

    An open circuit wind tunnel designed to operate in a large vacuum chamber was built at NASA-Ames to investigate saltation threshold, flux, deflation rates, and other aeolian phenomena on the planet Mars. The vacuum chamber will operate at pressures as low as 4 mbar, and the tunnel operates at windspeeds as high as 150 m/sec. Either air or CO2 can be used as a working fluid. It was found that, to a first order approximation, the same dynamic pressure was required at Martian pressure to entrain or saltate particles as was required on Earth, although wind and particle speed are considerably higher at Martian pressure. A 2nd wind tunnel, designed to operate aboard the NASA KC-135 0-g aircraft to obtain information on the effect of gravity on saltation threshold and the interparticle force at 0-g, is also described and test data presented. Some of the experiments are summarized and various aspects of low pressure aeolian entrainment for particles 12 to 100 micron in diameter are discussed, some of them unique to low pressure testing and some common in Earth pressure particle transport testing. The facility, the modes of operation, and the materials used are described.

  14. Three-dimensional modeling of air flow and pollutant dispersion in an urban street canyon with thermal effects.

    PubMed

    Tsai, Mong-Yu; Chen, Kang-Shin; Wu, Chung-Hsing

    2005-08-01

    Effects of excess ground and building temperatures on airflow and dispersion of pollutants in an urban street canyon with an aspect ratio of 0.8 and a length-to-width ratio of 3 were investigated numerically. Three-dimensional governing equations of mass, momentum, energy, and species were modeled using the RNG k-epsilon turbulence model and Boussinesq approximation, which were solved using the finite volume method. Vehicle emissions were estimated from the measured traffic flow rates and modeled as banded line sources, with a street length and bandwidths equal to typical vehicle widths. Both measurements and simulations reveal that pollutant concentrations typically follow the traffic flow rate; they decline as the height increases and are higher on the leeward side than on the windward side. Three-dimensional simulations reveal that the vortex line, joining the centers of cross-sectional vortexes of the street canyon, meanders between street buildings and shifts toward the windward side when heating strength is increased. Thermal boundary layers are very thin. Entrainment of outside air increases, and pollutant concentration decreases with increasing heating condition. Also, traffic-produced turbulence enhances the turbulent kinetic energy and the mixing of temperature and admixtures in the canyon. Factors affecting the inaccuracy of the simulations are addressed. PMID:16187587

  15. Observations of Cloud Top Entrainment Instability Induced by Aircraft Wake Downwash

    NASA Astrophysics Data System (ADS)

    Walcek, C. J.

    2012-12-01

    Aircraft produce considerable turbulence and generate 20-80 m/s downward velocity impulses immediately below the airframe and wings. This downward-propagating air produces turbulent vortices that descend 100-300 meters before dissipating. If an aircraft flies very close to the tops of stratiform clouds, it can induce mixing between cloudy air and clear air pushed into the cloud from above cloud top. Here we present photographs and evidence that aircraft flying close to the tops of stable stratiform clouds can trigger the release of cloud-top entrainment instability (CTEI). Negatively-buoyant air can be produced as warm air forced into a cloud from above cloud top mixes with colder cloudy air, inducing evaporation and further cooling below the cloud temperature, thus initiating turbulent downdrafts that can propagate the CTEI mechanism that ultimately dissipates and evaporates the top several hundred meters near cloud top. Photographs taken from observation chase planes flying 1-2 km above another aircraft flying very close to cloud top show 50-100 m wide swaths cleared within 3-4 seconds after fly-over, and growth rates of 2-3 m/s lateral to the flight track are observed. Ultimately "canal cloud" or "hole punch" features 2-3 km wide are generated in 20-30 minutes following the flyover from this mechanism. Here the mechanism of aircraft downwash is reviewed, CTEI is described, and evidence of the importance of evaporation and entrainment is provided from unpublished results from the late 1940s-era "project CIRRUS" and more recent images of hole-punch and canal-clouds. Since the propagation of this turbulent process occurs in turbulent filaments of mixtures of clear and cloudy air, modeling this process will require resolutions of less than several meters, yet require simulation domains several 1000s of meters wide. Similarly, measurements of dissipated cloud regions induced by aircraft would require resolutions of several meters or 10s of Hz to unambiguously

  16. Effect of mineral viscosity-enhancing admixtures on the solidification of evaporator concentrates.

    PubMed

    Lin, Chung-Yung; Huang, Wan-Ting

    2015-11-15

    It is known that partial replacement of cement by viscosity-enhancing admixtures, also known as anti-washout admixtures, affects the quality of the waste form or concrete. To reduce the bleeding rate of the paste, the characteristics of various mineral viscosity-enhancing admixtures dispersed in saline solutions were investigated, including sedimentation and viscosity. The admixture candidates included fly ash, silica fume, bentonite, and palygorskite. The effect of these admixtures blended with a cement-based matrix on the bleeding rate of the solidification of evaporator concentrates was also examined in this paper. The experimental results show the palygorskite Type 400 is the best choice to improve the quality of waste form, due to its excellent suspension property in the saline solution. The bleeding rate of paste decreased as the dispersion volume of the admixture suspension increased. For consideration of the quality of waste forms and the concentrate loading, the optimization of the palygorskite/concentrate ratio of 15-17 wt% and solidification agent/concentrate ratio of 1.0-1.2 were adopted. With this recipe, the quality of waste forms resulting from the solidification of simulated and actual evaporator concentrates mainly containing chloride met the regulations' requirements.

  17. Population divergence with or without admixture: selecting models using an ABC approach

    PubMed Central

    Sousa, V C; Beaumont, M A; Fernandes, P; Coelho, M M; Chikhi, L

    2012-01-01

    Genetic data have been widely used to reconstruct the demographic history of populations, including the estimation of migration rates, divergence times and relative admixture contribution from different populations. Recently, increasing interest has been given to the ability of genetic data to distinguish alternative models. One of the issues that has plagued this kind of inference is that ancestral shared polymorphism is often difficult to separate from admixture or gene flow. Here, we applied an approximate Bayesian computation (ABC) approach to select the model that best fits microsatellite data among alternative splitting and admixture models. We performed a simulation study and showed that with reasonably large data sets (20 loci) it is possible to identify with a high level of accuracy the model that generated the data. This suggests that it is possible to distinguish genetic patterns due to past admixture events from those due to shared polymorphism (population split without admixture). We then apply this approach to microsatellite data from an endangered and endemic Iberian freshwater fish species, in which a clustering analysis suggested that one of the populations could be admixed. In contrast, our results suggest that the observed genetic patterns are better explained by a population split model without admixture. PMID:22146980

  18. Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation

    PubMed Central

    Sanderson, Jean; Sudoyo, Herawati; Karafet, Tatiana M.; Hammer, Michael F.; Cox, Murray P.

    2015-01-01

    Admixture between long-separated populations is a defining feature of the genomes of many species. The mosaic block structure of admixed genomes can provide information about past contact events, including the time and extent of admixture. Here, we describe an improved wavelet-based technique that better characterizes ancestry block structure from observed genomic patterns. principal components analysis is first applied to genomic data to identify the primary population structure, followed by wavelet decomposition to develop a new characterization of local ancestry information along the chromosomes. For testing purposes, this method is applied to human genome-wide genotype data from Indonesia, as well as virtual genetic data generated using genome-scale sequential coalescent simulations under a wide range of admixture scenarios. Time of admixture is inferred using an approximate Bayesian computation framework, providing robust estimates of both admixture times and their associated levels of uncertainty. Crucially, we demonstrate that this revised wavelet approach, which we have released as the R package adwave, provides improved statistical power over existing wavelet-based techniques and can be used to address a broad range of admixture questions. PMID:25852078

  19. A Novel Admixture-Based Pharmacogenetic Approach to Refine Warfarin Dosing in Caribbean Hispanics

    PubMed Central

    Claudio-Campos, Karla; Rivera-Miranda, Giselle; Bermúdez-Bosch, Luis; Renta, Jessicca Y.; Cadilla, Carmen L.; Cruz, Iadelisse; Feliu, Juan F.; Vergara, Cunegundo; Ruaño, Gualberto

    2016-01-01

    Aim This study is aimed at developing a novel admixture-adjusted pharmacogenomic approach to individually refine warfarin dosing in Caribbean Hispanic patients. Patients & Methods A multiple linear regression analysis of effective warfarin doses versus relevant genotypes, admixture, clinical and demographic factors was performed in 255 patients and further validated externally in another cohort of 55 individuals. Results The admixture-adjusted, genotype-guided warfarin dosing refinement algorithm developed in Caribbean Hispanics showed better predictability (R2 = 0.70, MAE = 0.72mg/day) than a clinical algorithm that excluded genotypes and admixture (R2 = 0.60, MAE = 0.99mg/day), and outperformed two prior pharmacogenetic algorithms in predicting effective dose in this population. For patients at the highest risk of adverse events, 45.5% of the dose predictions using the developed pharmacogenetic model resulted in ideal dose as compared with only 29% when using the clinical non-genetic algorithm (p<0.001). The admixture-driven pharmacogenetic algorithm predicted 58% of warfarin dose variance when externally validated in 55 individuals from an independent validation cohort (MAE = 0.89 mg/day, 24% mean bias). Conclusions Results supported our rationale to incorporate individual’s genotypes and unique admixture metrics into pharmacogenetic refinement models in order to increase predictability when expanding them to admixed populations like Caribbean Hispanics. Trial Registration ClinicalTrials.gov NCT01318057 PMID:26745506

  20. Estimated Entrainment of Dungeness Crab During Dredging For The Columbia River Channel Improvement Project

    SciTech Connect

    Pearson, Walter H.; Williams, Greg D.; Skalski, John R.

    2002-12-01

    The studies reported here focus on issues regarding the entrainment of Dungeness crab related to the proposed Columbia River Channel Improvement Project and provided direct measurements of crab entrainment rates at three locations (Desdomona Shoals, Upper Sands, and Miller Sands) from RM4 to RM24 during summer 2002. Entrainment rates for all age classes of crabs ranged from zero at Miller Sands to 0.224 crabs per cy at Desdemona Shoals in June 2002. The overall entrainment rate at Desdomona Shoals in September was 0.120 crabs per cy. A modified Dredge Impact Model (DIM) used the summer 2002 entrainment rates to project crab entrainment and adult equivalent loss and loss to the fishery for the Channel Improvement Project. To improve the projections, entrainment data from Flavel Bar is needed. The literature, analyses of salinity intrusion scenarios, and the summer 2002 site-specific data on entrainment and salinity all indicate that bottom salinity influences crab distribution and entrainment, especially at lower salinities. It is now clear from field measurements of entrainment rates and salinity during a period of low river flow (90-150 Kcfs) and high salinity intrusion that entrainment rates are zero where bottom salinity is less than 16 o/oo most of the time. Further, entrainment rates of 2+ and older crab fall with decreasing salinity in a clear and consistent manner. More elaboration of the crab distribution- salinity model, especially concerning salinity and the movements of 1+ crab, is needed.

  1. Multiway admixture deconvolution using phased or unphased ancestral panels.

    PubMed

    Churchhouse, Claire; Marchini, Jonathan

    2013-01-01

    We describe a novel method for inferring the local ancestry of admixed individuals from dense genome-wide single nucleotide polymorphism data. The method, called MULTIMIX, allows multiple source populations, models population linkage disequilibrium between markers and is applicable to datasets in which the sample and source populations are either phased or unphased. The model is based upon a hidden Markov model of switches in ancestry between consecutive windows of loci. We model the observed haplotypes within each window using a multivariate normal distribution with parameters estimated from the ancestral panels. We present three methods to fit the model-Markov chain Monte Carlo sampling, the Expectation Maximization algorithm, and a Classification Expectation Maximization algorithm. The performance of our method on individuals simulated to be admixed with European and West African ancestry shows it to be comparable to HAPMIX, the ancestry calls of the two methods agreeing at 99.26% of loci across the three parameter groups. In addition to it being faster than HAPMIX, it is also found to perform well over a range of extent of admixture in a simulation involving three ancestral populations. In an analysis of real data, we estimate the contribution of European, West African and Native American ancestry to each locus in the Mexican samples of HapMap, giving estimates of ancestral proportions that are consistent with those previously reported. PMID:23136122

  2. PFAT5 and the Evolution of Lipid Admixture Stability.

    PubMed

    Klang, Mark G

    2015-09-01

    PFAT5 is defined by United States Pharmacopeia Chapter 729 as follows: the "percentage of fat residing in globules larger than 5 µm (PFAT5) for a given lipid injectable emulsion [is] not to exceed 0.05%." The unstable aggregates are trapped in lungs, liver, and the reticuloendothelial system. Large particles will accumulate in pulmonary capillaries, which are between 4 and 9 µm in diameter. Over the years, there has been an evolution of methods to characterize and define intravenous fat emulsion (IVFE) stability when combined as a total nutrient admixture (TNA). Many studies have claimed IVFE stability measuring mean particle size, zeta potential, and visual checks. Interestingly, none of the studies that claimed the TNA as stable identified an unstable one through testing. This report reviews those parameters and shows they were not a valid measure of lipid stability. The PFAT5 parameter has emerged as the only validated measure of lipid stability. There are clinical consequences of using lipids that exceed the PFAT5 limit. This parameter is applicable to both manufactured and compounded lipid preparations. The clinician should be aware of the limitations of much of the literature concerning the lipid stability assessment. More stability studies are needed using PFAT5 to identify the actual limits of TNA compounding.

  3. Strong Selection at MHC in Mexicans since Admixture

    PubMed Central

    Zhou, Quan; Zhao, Liang; Guan, Yongtao

    2016-01-01

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the MHC region Mexicans have excessive African ancestral alleles compared to the rest of the genome, which is the hallmark of recent selection for admixed samples. The estimated selection coefficients are 0.05 and 0.07 for two datasets, which put our finding among the strongest known selections observed in humans, namely, lactase selection in northern Europeans and sickle-cell trait in Africans. Using inaccurate Amerindian training samples was a major concern for the credibility of previously reported selection signals in Latinos. Taking advantage of the flexibility of our statistical model, we devised a model fitting technique that can learn Amerindian ancestral haplotype from the admixed samples, which allows us to infer local ancestries for Mexicans using only European and African training samples. The strong selection signal at the MHC remains without Amerindian training samples. Finally, we note that medical history studies suggest such a strong selection at MHC is plausible in Mexicans. PMID:26863142

  4. Activity of octreotide acetate in a total nutrient admixture.

    PubMed

    Ritchie, D J; Holstad, S G; Westrich, T J; Hirsch, J D; O'Dorisio, T M

    1991-10-01

    The activity of octreotide acetate in a total nutrient admixture (TNA) and the effect of the drug on the stability of lipid emulsion in the TNA were studied. Octreotide acetate injection was added to a standard solution containing 3% lipids, amino acids, dextrose, electrolytes, vitamins, and trace elements to achieve a theoretical concentration of 45 micrograms/dL. Samples were stored at room temperature for 48 hours. Octreotide concentrations were determined in triplicate by radioimmunoassay; physical stability of the solutions was assessed by lipid particle-size determination, pH measurement, and visual observation of emulsion integrity at 0, 12, 24, and 48 hours. The activity of octreotide in two samples of each solution (with and without lipid) was analyzed immediately after preparation and after seven days under refrigeration. There was no evidence of emulsion breakdown or pH change in any solution over the study period. In addition, particle-size distributions at 48 hours and 7 days were comparable to those at time zero, suggesting physical stability. Octreotide acetate activity was not consistently greater than 90% (mean +/- S.D.) after storage for 48 hours. Octreotide acetate at a theoretical concentration of 45 micrograms/dL in a TNA solution containing 3% lipids appeared to be physically compatible for 48 hours at room temperature and for 7 days under refrigeration. However, the chemical activity of octreotide in TNA was not consistent after storage for 48 hours.

  5. Admixture into and within sub-Saharan Africa

    PubMed Central

    Busby, George BJ; Band, Gavin; Si Le, Quang; Jallow, Muminatou; Bougama, Edith; Mangano, Valentina D; Amenga-Etego, Lucas N; Enimil, Anthony; Apinjoh, Tobias; Ndila, Carolyne M; Manjurano, Alphaxard; Nyirongo, Vysaul; Doumba, Ogobara; Rockett, Kirk A; Kwiatkowski, Dominic P; Spencer, Chris CA

    2016-01-01

    Similarity between two individuals in the combination of genetic markers along their chromosomes indicates shared ancestry and can be used to identify historical connections between different population groups due to admixture. We use a genome-wide, haplotype-based, analysis to characterise the structure of genetic diversity and gene-flow in a collection of 48 sub-Saharan African groups. We show that coastal populations experienced an influx of Eurasian haplotypes over the last 7000 years, and that Eastern and Southern Niger-Congo speaking groups share ancestry with Central West Africans as a result of recent population expansions. In fact, most sub-Saharan populations share ancestry with groups from outside of their current geographic region as a result of gene-flow within the last 4000 years. Our in-depth analysis provides insight into haplotype sharing across different ethno-linguistic groups and the recent movement of alleles into new environments, both of which are relevant to studies of genetic epidemiology. DOI: http://dx.doi.org/10.7554/eLife.15266.001 PMID:27324836

  6. Admixture into and within sub-Saharan Africa.

    PubMed

    Busby, George Bj; Band, Gavin; Si Le, Quang; Jallow, Muminatou; Bougama, Edith; Mangano, Valentina D; Amenga-Etego, Lucas N; Enimil, Anthony; Apinjoh, Tobias; Ndila, Carolyne M; Manjurano, Alphaxard; Nyirongo, Vysaul; Doumba, Ogobara; Rockett, Kirk A; Kwiatkowski, Dominic P; Spencer, Chris Ca

    2016-01-01

    Similarity between two individuals in the combination of genetic markers along their chromosomes indicates shared ancestry and can be used to identify historical connections between different population groups due to admixture. We use a genome-wide, haplotype-based, analysis to characterise the structure of genetic diversity and gene-flow in a collection of 48 sub-Saharan African groups. We show that coastal populations experienced an influx of Eurasian haplotypes over the last 7000 years, and that Eastern and Southern Niger-Congo speaking groups share ancestry with Central West Africans as a result of recent population expansions. In fact, most sub-Saharan populations share ancestry with groups from outside of their current geographic region as a result of gene-flow within the last 4000 years. Our in-depth analysis provides insight into haplotype sharing across different ethno-linguistic groups and the recent movement of alleles into new environments, both of which are relevant to studies of genetic epidemiology. PMID:27324836

  7. Strong Selection at MHC in Mexicans since Admixture.

    PubMed

    Zhou, Quan; Zhao, Liang; Guan, Yongtao

    2016-02-01

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the MHC region Mexicans have excessive African ancestral alleles compared to the rest of the genome, which is the hallmark of recent selection for admixed samples. The estimated selection coefficients are 0.05 and 0.07 for two datasets, which put our finding among the strongest known selections observed in humans, namely, lactase selection in northern Europeans and sickle-cell trait in Africans. Using inaccurate Amerindian training samples was a major concern for the credibility of previously reported selection signals in Latinos. Taking advantage of the flexibility of our statistical model, we devised a model fitting technique that can learn Amerindian ancestral haplotype from the admixed samples, which allows us to infer local ancestries for Mexicans using only European and African training samples. The strong selection signal at the MHC remains without Amerindian training samples. Finally, we note that medical history studies suggest such a strong selection at MHC is plausible in Mexicans. PMID:26863142

  8. Landslide boost from entrainment of erodible material along the slope

    NASA Astrophysics Data System (ADS)

    Farin, M.; Mangeney, A.; Roche, O.; Ionescu, I.; Hungr, O.

    2011-12-01

    Landslides, debris flows, pyroclastic flows and avalanches are natural hazards that threaten life and property in mountainous, volcanic, coastal and seismically active areas. The granular mass tends to accelerate as gravity pulls it down the slope, and will slow on more gentle slopes, when interaction forces dissipating energy overcome the driving forces. The entrainment of underlying sediments or debris into the gravitational granular flows is suspected to be critical to their dynamics, but direct measurement of material entrainment in natural flows is very difficult. Nevertheless, qualitative and quantitative field observations suggest that material entrainment can either increase or decrease flow velocity and deposit extent, depending on the geological setting and the type of gravitational flow. Based on laboratory experiments on dry granular flows, we show here that erosion of granular material already present on the bed can significantly increase the size and mobility of the flow and possibly generate surges. We present laboratory experiments of granular material flowing over an inclined plane covered by an erodible bed, designed to mimic erosion processes of natural flows traveling over deposits built up by earlier events. The controlling parameters are the inclination of the plane and the thickness of the erodible layer. Different methods are used to prepare the erodible bed, thus leading to various degrees of compaction. We show that erosion processes increases the flow mobility (i. e. runout) by up to 40 % over slopes with inclination close to the repose angle of the grains. The effect is observed even for very thin erodible beds. We demonstrate that the increase of mass of the flowing grains caused by entrainment of the erodible layer is not enough to explain the observed increase in velocity and runout of the granular mass. Erosion efficiency is shown to strongly depend on the slope and on the nature (i. e. degree of compaction) of the erodible bed

  9. Mathematical modeling of heat exchange between mine air and rock mass during fire

    SciTech Connect

    A.E. Krasnoshtein; B.P. Kazakov; A.V. Shalimov

    2006-05-15

    Solution of problems on heat exchange between ventilating air and rock mass and on gas admixture propagation in mine workings serve as a base for considering changes in heat-gas-air state at a mine after inflammation. The presented mathematical relations allow calculation of a varied velocity and movement direction of air flows, their temperatures and smoking conditions during fire.

  10. The Entrainment Interface Layer of Stratocumulus-Topped Boundary Layers during POST

    NASA Astrophysics Data System (ADS)

    Krueger, S. K.; Hill, S. A.

    2010-12-01

    The Physics of Stratocumulus Top (POST) field campaign took place in July and August of 2008. The CIRPAS Twin Otter research aircraft was deployed on 17 daytime and nighttime flights to collect data on dynamics, thermodynamics, radiation, and microphysics from marine stratocumulus-topped boundary layers off of the coast of Monterey, California. Our focus is on the characteristics of the Entrainment Interface Layer (EIL), in which there is a transition from pure, well-mixed cloud air to pure free-atmosphere air. During each flight, the aircraft traversed the EIL many times. The nearly co-located, high-rate Ultra-Fast Thermometer (UFT) and Particle Volume Monitor (PVM) mounted on the aircraft enabled measurements of the conserved variable liquid-water potential temperature to be made at very high spatial resolution (~ 50 cm). By using variables that are conserved for moist adiabatic processes, we can examine the contributions to changes in buoyancy from mixing, phase changes, and radiation of air parcels in the EIL as a function of the mixture fraction of pure free-atmosphere air. For this purpose, we followed the method developed by van Zanten and Duynkerke (2002). We used measurements of temperature, liquid water content, water vapor mixing ratio, and pressure for our mixture fraction analysis. We also determined the bottom and top heights of the EIL for each ascent and descent through it for several flights. We found that the EIL is always present, although its thickness and structure vary spatially and from flight to flight.

  11. Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

    NASA Technical Reports Server (NTRS)

    Vu, Bruce T.; Oliveira, Justin

    2011-01-01

    This paper describes the Computational Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing tests of the Taurus-II launch vehicle. The finite-rate chemistry is used to model the combustion process involving rocket propellant (RP-1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region, thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

  12. Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

    NASA Technical Reports Server (NTRS)

    Vu, Bruce; Oliveira, Justin

    2011-01-01

    This paper describes the Computation Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing test of the Taurus II launch vehicle. The finite rate chemistry is used to model the combustion process involving rocket propellant (RP 1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

  13. Investigation of entrainment and thermal properties of a cryogenic dense-gas cloud using optical measurement techniques.

    PubMed

    Kunsch, J P; Rösgen, T

    2006-09-01

    Cryogenic dense-gas clouds have been investigated in a heavy-gas channel under controlled source and ambient conditions. Advantage is taken from new, non-intrusive optical measurement techniques (e.g. image correlation velocimetry, ICV, and background oriented Schlieren, BOS) providing detailed pictures of the temperature and velocity field in relevant regions of the cloud. The ice particles in the cloud, formed by nucleation, represent a natural seeding to be used as tracers, which have the advantage of behaving passively. Two layers can be identified in a cryogenic gas cloud: a lower cold layer, which is visible due to the presence of ice particles, and an invisible upper layer, where the ice particles have melted, mostly due to heat addition by air entrainment into the upper layer. A two-layer model has been applied to a generic element of the cloud, where detailed experimental data regarding velocity and temperature are available. Thermal- and dilution behaviour can be interpreted by means of the model which is presented in detail. A global entrainment parameter is deduced allowing a simple comparison with existing experimental information obtained by other traditional experimental techniques. The numerical values of the present entrainment parameter agree well with the correlations proposed by other authors. Thermal effects, such as heat transfer from the ground, appear to be very important. In addition, the visible height of the cloud can be predicted in relative good agreement with the experimental observations, by means of a thermal balance including the phase transition of the ice particles.

  14. Particle collection efficiency and particle re-entrainment of an electrostatic precipitator in a sewage sludge incineration plant.

    PubMed

    Ferge, Thomas; Maguhn, Jürgen; Felber, Hannes; Zimmermann, Ralf

    2004-03-01

    In several recent studies it was shown that high atmospheric loads of submicrometer particles in the size range below 500 nm have strong impact on human health. Therefore, extensive research concerning the reduction of fine particle emissions is needed to further improve air quality. Regarding health effects, especially the emission characteristics of fine and ultrafine particles emerging from anthropogenic sources such as combustion processes are of special interest. This study shows that the emission characteristic of an electrostatic precipitator (ESP) due to re-entrainment of fine particles and their subsequent release into the atmosphere can be significantly lowered by application of different operating conditions. For this purpose the particle collection efficiency of an ESP was studied in a municipal sewage sludge incineration plant. Particles were sampled under different operating conditions upstream and downstream from the ESP, and the particle number concentrations were measured simultaneously with aerodynamic particle sizers. In addition, the size distribution of the particles downstream from the ESP was measured with high time resolution by an electrical low-pressure impactor to investigate the particle re-entrainment into the flue gas. To determine the influence of operating conditions, different rapping cycles were investigated regarding their impact on the collection efficiency and the subsequent particle re-entrainment.

  15. Gradient layer entrainment in a thermohaline system with mixed layer circulation

    SciTech Connect

    Incropera, F.P.; Lents, C.E.; Viskanta, R.

    1986-11-01

    Entrainment of salt-stratified fluid into a bottom mixed layer is investigated under conditions for which mixing is driven by bottom heating and/or an imposed horizontal flow. Entrainment rate measurements and mixed layer flow visualization suggest that entrainment is strongly influenced by a shear mechanism involving both horizontal and vertical fluid velocity components. Under certain conditions, imposition of the horizontal flow inhibits the buoyancy flow and entrainment rates for combined mixing are less than those for pure buoyant mixing. Attempts to correlate entrainment rates in terms of conventional dimensionless parameters were unsuccessful.

  16. Magnetized neutron stars with superconducting cores: effect of entrainment

    NASA Astrophysics Data System (ADS)

    Palapanidis, K.; Stergioulas, N.; Lander, S. K.

    2015-09-01

    We construct equilibrium configurations of magnetized, two-fluid neutron stars using an iterative numerical method. Working in Newtonian framework we assume that the neutron star has two regions: the core, which is modelled as a two-component fluid consisting of type-II superconducting protons and superfluid neutrons, and the crust, a region composed of normal matter. Taking a new step towards more complete equilibrium models, we include the effect of entrainment, which implies that a magnetic force acts on neutrons, too. We consider purely poloidal field cases and present improvements to an earlier numerical scheme for solving equilibrium equations, by introducing new convergence criteria. We find that entrainment results in qualitative differences in the structure of field lines along the magnetic axis.

  17. Synchrony and entrainment properties of robust circadian oscillators

    PubMed Central

    Bagheri, Neda; Taylor, Stephanie R.; Meeker, Kirsten; Petzold, Linda R.; Doyle, Francis J.

    2008-01-01

    Systems theoretic tools (i.e. mathematical modelling, control, and feedback design) advance the understanding of robust performance in complex biological networks. We highlight phase entrainment as a key performance measure used to investigate dynamics of a single deterministic circadian oscillator for the purpose of generating insight into the behaviour of a population of (synchronized) oscillators. More specifically, the analysis of phase characteristics may facilitate the identification of appropriate coupling mechanisms for the ensemble of noisy (stochastic) circadian clocks. Phase also serves as a critical control objective to correct mismatch between the biological clock and its environment. Thus, we introduce methods of investigating synchrony and entrainment in both stochastic and deterministic frameworks, and as a property of a single oscillator or population of coupled oscillators. PMID:18426774

  18. Numerical Modeling of Deep Mantle Flow: Thermochemical Convection and Entrainment

    NASA Astrophysics Data System (ADS)

    Mulyukova, Elvira; Steinberger, Bernhard; Dabrowski, Marcin; Sobolev, Stephan

    2013-04-01

    One of the most robust results from tomographic studies is the existence of two antipodally located Large Low Shear Velocity Provinces (LLSVPs) at the base of the mantle, which appear to be chemically denser than the ambient mantle. Results from reconstruction studies (Torsvik et al., 2006) infer that the LLSVPs are stable, long-lived, and are sampled by deep mantle plumes that rise predominantly from their margins. The origin of the dense material is debated, but generally falls within three categories: (i) a primitive layer that formed during magma ocean crystallization, (ii) accumulation of a dense eclogitic component from the recycled oceanic crust, and (iii) outer core material leaking into the lower mantle. A dense layer underlying a less dense ambient mantle is gravitationally stable. However, the flow due to thermal density variations, i.e. hot rising plumes and cold downwelling slabs, may deform the layer into piles with higher topography. Further deformation may lead to entrainment of the dense layer, its mixing with the ambient material, and even complete homogenisation with the rest of the mantle. The amount of the anomalous LLSVP-material that gets entrained into the rising plumes poses a constraint on the survival time of the LLSVPs, as well as on the plume buoyancy, on the lithospheric uplift associated with plume interaction and geochemical signature of the erupted lavas observed at the Earth's surface. Recent estimates for the plume responsible for the formation of the Siberian Flood Basalts give about 15% of entrained dense recycled oceanic crust, which made the hot mantle plume almost neutrally buoyant (Sobolev et al., 2011). In this numerical study we investigate the mechanics of entrainment of a dense basal layer by convective mantle flow. We observe that the types of flow that promote entrainment of the dense layer are (i) upwelling of the dense layer when it gets heated enough to overcome its stabilizing chemical density anomaly, (ii

  19. Thermal mortality prediction equations for entrainable striped bass

    SciTech Connect

    Kellogg, R.J.; Ligotino, R.J.; Jinks, S.M.

    1984-11-01

    Thermal mortality prediction equations based on a logistic regression model were developed for eggs, for yolk-sac larvae, and for postyolk-sac larvae plus early juveniles of striped bass Morone saxatilis. Exposure temperature, exposure duration, acclimation temperature, and fish size were important explanatory variables. Mortality increased as test temperature and exposure duration increased and decreased as acclimation temperature and size increased. In addition to these main variables, interaction terms significantly improved the performance of the equations for yolk-sac larvae and for postyolk-sac larvae plus early juveniles. These mortality models can be used to make predictive assessments of the thermal component of entrainment mortality or to help determine power plant operating conditions that minimize the entrainment impact. 23 references, 1 figure, 2 tables.

  20. Entrainment parameters in a cold superfluid neutron star core

    SciTech Connect

    Chamel, Nicolas; Haensel, Pawel

    2006-04-15

    Hydrodynamic simulations of neutron star cores that are based on a two-fluid description in terms of a neutron-proton superfluid mixture require the knowledge of the Andreev-Bashkin entrainment matrix which relates the momentum of one constituent to the currents of both constituents. This matrix is derived for arbitrary nuclear asymmetry at zero temperature and in the limits of small relative currents in the framework of the energy density functional theory. The Skyrme energy density functional is considered as a particular case. General analytic formulas for the entrainment parameters and various corresponding effective masses are obtained. These formulas are applied to the liquid core of a neutron star composed of homogeneous plasma of nucleons, electrons, and possibly muons in {beta} equilibrium.

  1. An entrainment model for the turbulent jet in a coflow

    NASA Astrophysics Data System (ADS)

    Enjalbert, Nicolas; Galley, David; Pierrot, Laurent

    2009-09-01

    The entrainment hypothesis was introduced by G.I. Taylor to describe one-dimensionally the development of turbulent jets issuing into a stagnant or coflowing environment. It relates the mass flow rate of surrounding fluid entrained into the jet to the characteristic velocity difference between the jet and the coflow. A model based on this hypothesis along with axial velocity assumed to follow a realistic Gaussian distribution is presented. It possesses an implicit analytical solution, and its results are compared and shown to be fully equivalent to previously published models that are rather based on a spreading hypothesis. All of them are found to be in agreement with experimental results, on a wide range of downstream positions and for various coflow intensities. To cite this article: N. Enjalbert et al., C. R. Mecanique 337 (2009).

  2. Rhythmic TMS Causes Local Entrainment of Natural Oscillatory Signatures

    PubMed Central

    Thut, Gregor; Veniero, Domenica; Romei, Vincenzo; Miniussi, Carlo; Schyns, Philippe; Gross, Joachim

    2011-01-01

    Summary Background Neuronal elements underlying perception, cognition, and action exhibit distinct oscillatory phenomena, measured in humans by electro- or magnetoencephalography (EEG/MEG). So far, the correlative or causal nature of the link between brain oscillations and functions has remained elusive. A compelling demonstration of causality would primarily generate oscillatory signatures that are known to correlate with particular cognitive functions and then assess the behavioral consequences. Here, we provide the first direct evidence for causal entrainment of brain oscillations by transcranial magnetic stimulation (TMS) using concurrent EEG. Results We used rhythmic TMS bursts to directly interact with an MEG-identified parietal α-oscillator, activated by attention and linked to perception. With TMS bursts tuned to its preferred α-frequency (α-TMS), we confirmed the three main predictions of entrainment of a natural oscillator: (1) that α-oscillations are induced during α-TMS (reproducing an oscillatory signature of the stimulated parietal cortex), (2) that there is progressive enhancement of this α-activity (synchronizing the targeted, α-generator to the α-TMS train), and (3) that this depends on the pre-TMS phase of the background α-rhythm (entrainment of natural, ongoing α-oscillations). Control conditions testing different TMS burst profiles and TMS-EEG in a phantom head confirmed specificity of α-boosting to the case of synchronization between TMS train and neural oscillator. Conclusions The periodic electromagnetic force that is generated during rhythmic TMS can cause local entrainment of natural brain oscillations, emulating oscillatory signatures activated by cognitive tasks. This reveals a new mechanism of online TMS action on brain activity and can account for frequency-specific behavioral TMS effects at the level of biologically relevant rhythms. PMID:21723129

  3. Exploring Population Admixture Dynamics via Empirical and Simulated Genome-wide Distribution of Ancestral Chromosomal Segments

    PubMed Central

    Jin, Wenfei; Wang, Sijia; Wang, Haifeng; Jin, Li; Xu, Shuhua

    2012-01-01

    The processes of genetic admixture determine the haplotype structure and linkage disequilibrium patterns of the admixed population, which is important for medical and evolutionary studies. However, most previous studies do not consider the inherent complexity of admixture processes. Here we proposed two approaches to explore population admixture dynamics, and we demonstrated, by analyzing genome-wide empirical and simulated data, that the approach based on the distribution of chromosomal segments of distinct ancestry (CSDAs) was more powerful than that based on the distribution of individual ancestry proportions. Analysis of 1,890 African Americans showed that a continuous gene flow model, in which the African American population continuously received gene flow from European populations over about 14 generations, best explained the admixture dynamics of African Americans among several putative models. Interestingly, we observed that some African Americans had much more European ancestry than the simulated samples, indicating substructures of local ancestries in African Americans that could have been caused by individuals from some particular lineages having repeatedly admixed with people of European ancestry. In contrast, the admixture dynamics of Mexicans could be explained by a gradual admixture model in which the Mexican population continuously received gene flow from both European and Amerindian populations over about 24 generations. Our results also indicated that recent gene flows from Sub-Saharan Africans have contributed to the gene pool of Middle Eastern populations such as Mozabite, Bedouin, and Palestinian. In summary, this study not only provides approaches to explore population admixture dynamics, but also advances our understanding on population history of African Americans, Mexicans, and Middle Eastern populations. PMID:23103229

  4. Physicochemical compatibility of nebulizable drug admixtures containing budesonide and colistimethate or hypertonic saline.

    PubMed

    Klemmer, Anja; Krämer, Irene; Kamin, Wolfgang

    2013-01-01

    Knowledge of the physicochemical compatibility of admixtures of nebulizable drugs is an important issue. In this article, the results of our recent study dealing with the compatibility of drug admixtures containing budesonide and colistin methanesulfonate (brand name Colistin CF) or budesonide and 5.85% sodium chloride solution are presented, as well as the up-to-date version of our compatibility table. Admixtures were prepared by mixing 2.0 mL Pulmicort either with 3.0 mL Colistin CF or 4.0 mL 5.85% sodium chloride solution. Test solutions were stored for 24 hours at room temperature under ambient light conditions. Physical compatibility was determined by measuring pH and osmolality. Concentrations of budesonide were measured by a high-performance liquid chromatography assay. The antibiotic activity of colistin methanesulfonate was determined in comparison to standard solutions using a microbiological assay. No loss in drug concentration of budesonide and no change in antibiotic activity of colistin methanesulfonate were detected over a test period of 24 hours. Osmolality remained unchanged in both types of admixtures. In admixtures of budesonide with colistin methanesulfonate, pH increased during the first 4 hours of storage, while in admixtures of budesonide and hypertonic saline pH remained unchanged. No visible changes could be detected. Due to these results admixtures of budesonide and colistin methanesulfonate or 5.85% sodium chloride solution are designated to be compatible, but it is recommended that mixing should take place immediately before administration. Further investigations are needed to determine whether or not drug delivery is affected by mixing the drugs and to ensure simultaneous nebulization is recommendable. PMID:24046941

  5. Admixture mapping of genetic variants for uterine fibroids

    PubMed Central

    Zhang, Kui; Wiener, Howard; Aissani, Brahim

    2015-01-01

    Uterine leiomyoma (UL) are benign neoplasms arising from the smooth muscle cells of the uterus. One of the established risk factors for UL is African American ethnicity. Studies have consistently shown that African Americans have 2-3 times higher risk compared with that of non-Hispanic Whites. However, there is still no adequate explanation for the higher risk among African Americans. To investigate the genetic contribution to the observed difference between the African American and European American populations, we conducted an admixture scan in 525 eligible African American women participants to the NIEHS uterine fibroid study (NIEHS-UFS). In models with no stratification, we found multiple genomic regions showing significant and suggestive evidence of association, with chromosomal band 2q32.2 at rs256552 showing the highest score (Z-score = 7.86, Bonferroni adjusted p-value = 5.5×10-12) consistent with the suggestive evidence reported for this genomic region in the Black Women's Health Study. However, in models stratified by the body mass index (BMI) covariate, chromosomal 1q42.2 was the sole genomic region that consistently showed suggestive associations across the BMI categories tested (Z-scores ≤ -3.96, Bonferroni adjusted p-values ≤ 0.107). In age-stratified models, a significant association was observed in the older category (age > 40) reaching a Z-score of 6.44 (Bonferroni-adjusted p-value = 1.64 × 10-7) at rs256552. The mean percentage of European ancestry among cases was lower than that among controls in the NIEHS-UFS study. However, our study did not show a significant association between mean percentage of European ancestry and UL. PMID:26040208

  6. Admixture mapping of genetic variants for uterine fibroids.

    PubMed

    Zhang, Kui; Wiener, Howard; Aissani, Brahim

    2015-09-01

    Uterine leiomyoma (UL) are benign neoplasms arising from the smooth muscle cells of the uterus. One of the established risk factors for UL is African American ethnicity. Studies have consistently shown that African Americans have two to three times higher risk compared with that of non-Hispanic Whites. However, there is still no adequate explanation for the higher risk among African Americans. To investigate the genetic contribution to the observed difference between the African American and European American populations, we conducted an admixture scan in 525 eligible African American women participants to the NIEHS uterine fibroid study (NIEHS-UFS). In models with no stratification, we found multiple genomic regions showing significant and suggestive evidence of association, with chromosomal band 2q32.2 at rs256552 showing the highest score (Z-score=7.86, Bonferroni adjusted P-value=5.5 × 10(-12)) consistent with the suggestive evidence reported for this genomic region in the Black Women's Health Study. However, in models stratified by the body mass index (BMI) covariate, chromosome 1q42.2 was the sole genomic region that consistently showed suggestive associations across the BMI categories tested (Z-scores ⩽-3.96, Bonferroni adjusted P-values ⩽0.107). In age-stratified models, a significant association was observed in the older category (age >40) reaching a Z-score of 6.44 (Bonferroni-adjusted P-value=1.64 × 10(-7)) at rs256552. The mean percentage of European ancestry among cases was lower than that among controls in the NIEHS-UFS study. However, our study did not show a significant association between mean percentage of European ancestry and UL. PMID:26040208

  7. Admixture mapping of lung cancer in 1812 African-Americans.

    PubMed

    Schwartz, Ann G; Wenzlaff, Angela S; Bock, Cathryn H; Ruterbusch, Julie J; Chen, Wei; Cote, Michele L; Artis, Amanda S; Van Dyke, Alison L; Land, Susan J; Harris, Curtis C; Pine, Sharon R; Spitz, Margaret R; Amos, Christopher I; Levin, Albert M; McKeigue, Paul M

    2011-03-01

    Lung cancer continues to be the leading cause of cancer death in the USA and the best example of a cancer with undisputed evidence of environmental risk. However, a genetic contribution to lung cancer has also been demonstrated by studies of familial aggregation, family-based linkage, candidate gene studies and most recently genome-wide association studies (GWAS). The African-American population has been underrepresented in these genetic studies and has patterns of cigarette use and linkage disequilibrium that differ from patterns in other populations. Therefore, studies in African-Americans can provide complementary data to localize lung cancer susceptibility genes and explore smoking dependence-related genes. We used admixture mapping to further characterize genetic risk of lung cancer in a series of 837 African-American lung cancer cases and 975 African-American controls genotyped at 1344 ancestry informative single-nucleotide polymorphisms. Both case-only and case-control analyses were conducted using ADMIXMAP adjusted for age, sex, pack-years of smoking, family history of lung cancer, history of emphysema and study site. In case-only analyses, excess European ancestry was observed over a wide region on chromosome 1 with the largest excess seen at rs6587361 for non-small-cell lung cancer (NSCLC) (Z-score = -4.33; P = 1.5 × 10⁻⁵) and for women with NSCLC (Z-score = -4.82; P = 1.4 × 10⁻⁶). Excess African ancestry was also observed on chromosome 3q with a peak Z-score of 3.33 (P = 0.0009) at rs181696 among ever smokers with NSCLC. These results add to the findings from the GWAS in Caucasian populations and suggest novel regions of interest.

  8. Implications of the admixture process in skin color molecular assessment.

    PubMed

    Cerqueira, Caio Cesar Silva de; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice. PMID:24809478

  9. Extensive Admixture and Selective Pressure Across the Sahel Belt.

    PubMed

    Triska, Petr; Soares, Pedro; Patin, Etienne; Fernandes, Veronica; Cerny, Viktor; Pereira, Luisa

    2015-11-26

    Genome-wide studies of African populations have the potential to reveal powerful insights into the evolution of our species, as these diverse populations have been exposed to intense selective pressures imposed by infectious diseases, diet, and environmental factors. Within Africa, the Sahel Belt extensively overlaps the geographical center of several endemic infections such as malaria, trypanosomiasis, meningitis, and hemorrhagic fevers. We screened 2.5 million single nucleotide polymorphisms in 161 individuals from 13 Sahelian populations, which together with published data cover Western, Central, and Eastern Sahel, and include both nomadic and sedentary groups. We confirmed the role of this Belt as a main corridor for human migrations across the continent. Strong admixture was observed in both Central and Eastern Sahelian populations, with North Africans and Near Eastern/Arabians, respectively, but it was inexistent in Western Sahelian populations. Genome-wide local ancestry inference in admixed Sahelian populations revealed several candidate regions that were significantly enriched for non-autochthonous haplotypes, and many showed to be under positive selection. The DARC gene region in Arabs and Nubians was enriched for African ancestry, whereas the RAB3GAP1/LCT/MCM6 region in Oromo, the TAS2R gene family in Fulani, and the ALMS1/NAT8 in Turkana and Samburu were enriched for non-African ancestry. Signals of positive selection varied in terms of geographic amplitude. Some genomic regions were selected across the Belt, the most striking example being the malaria-related DARC gene. Others were Western-specific (oxytocin, calcium, and heart pathways), Eastern-specific (lipid pathways), or even population-restricted (TAS2R genes in Fulani, which may reflect sexual selection).

  10. Spatial assessment of Argentinean genetic admixture with geographical information systems.

    PubMed

    Diaz-Lacava, Amalia; Walier, Maja; Penacino, Gustavo; Wienker, Thomas F; Baur, Max P

    2011-08-01

    In recent years there has been much attention to Argentinean population stratification. We were interested in assessing population stratification from a geographical perspective and summarizing it in form of maps. We mapped the genetic admixture of the extant male population in central and northern Argentina on the basis of forensic Y-chromosomal haplotypes. We addressed the question which group of genetically similar individuals is predominant in this area. Haplotypes containing seven Y-chromosomal short tandem repeat polymorphisms (Y-STRs), also known as microsatellites - DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393 - were constructed for 145 individuals, recruited in 10 provinces. 97 distinct haplotypes were clustered into four clusters according to molecular distances. A genetic geostatistical analysis was conducted with the open-source geographical information system GRASS GIS. For each haplotype cluster, the according frequency was spatially interpolated over the total study area. Juxtaposing the interpolation surfaces, we screened point-wisely the maximal frequency as well as the label of the respective cluster. The screening results were combined in one summary map. We repeated this procedure for the second maximal frequencies. The resulting maps subdivide the study area into continuous regions comprising one predominant group of similar haplotypes. The first summary map divides the study area into three regions and the second summary map divides the area into four regions. The results of our analysis indicate that two groups of similar European haplotypes alternatively dominate the largest extension of the Argentinean territory. A third group, including South-American haplotypes, dominates the indigenous northwestern Argentinean area. The last group, including worldwide dispersed haplotypes, preponderates in frequency in second place in central Argentina. Our findings confirm a widespread European paternal ancestry, a substantial Amerindian

  11. Implications of the admixture process in skin color molecular assessment.

    PubMed

    Cerqueira, Caio Cesar Silva de; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice.

  12. Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

    PubMed Central

    Decker, Jared E.; McKay, Stephanie D.; Rolf, Megan M.; Kim, JaeWoo; Molina Alcalá, Antonio; Sonstegard, Tad S.; Hanotte, Olivier; Götherström, Anders; Seabury, Christopher M.; Praharani, Lisa; Babar, Masroor Ellahi; Correia de Almeida Regitano, Luciana; Yildiz, Mehmet Ali; Heaton, Michael P.; Liu, Wan-Sheng; Lei, Chu-Zhao; Reecy, James M.; Saif-Ur-Rehman, Muhammad; Schnabel, Robert D.; Taylor, Jeremy F.

    2014-01-01

    The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers scored in 1,543 animals, we evaluate the population structure of 134 domesticated bovid breeds. Regardless of the analytical method or sample subset, the three major groups of Asian indicine, Eurasian taurine, and African taurine were consistently observed. Patterns of geographic dispersal resulting from co-migration with humans and exportation are recognizable in phylogenetic networks. All analytical methods reveal patterns of hybridization which occurred after divergence. Using 19 breeds, we map the cline of indicine introgression into Africa. We infer that African taurine possess a large portion of wild African auroch ancestry, causing their divergence from Eurasian taurine. We detect exportation patterns in Asia and identify a cline of Eurasian taurine/indicine hybridization in Asia. We also identify the influence of species other than Bos taurus taurus and B. t. indicus in the formation of Asian breeds. We detect the pronounced influence of Shorthorn cattle in the formation of European breeds. Iberian and Italian cattle possess introgression from African taurine. American Criollo cattle originate from Iberia, and not directly from Africa with African ancestry inherited via Iberian ancestors. Indicine introgression into American cattle occurred in the Americas, and not Europe. We argue that cattle migration, movement and trading followed by admixture have been important forces in shaping modern bovine genomic variation. PMID:24675901

  13. Extensive Admixture and Selective Pressure Across the Sahel Belt

    PubMed Central

    Triska, Petr; Soares, Pedro; Patin, Etienne; Fernandes, Veronica; Cerny, Viktor; Pereira, Luisa

    2015-01-01

    Genome-wide studies of African populations have the potential to reveal powerful insights into the evolution of our species, as these diverse populations have been exposed to intense selective pressures imposed by infectious diseases, diet, and environmental factors. Within Africa, the Sahel Belt extensively overlaps the geographical center of several endemic infections such as malaria, trypanosomiasis, meningitis, and hemorrhagic fevers. We screened 2.5 million single nucleotide polymorphisms in 161 individuals from 13 Sahelian populations, which together with published data cover Western, Central, and Eastern Sahel, and include both nomadic and sedentary groups. We confirmed the role of this Belt as a main corridor for human migrations across the continent. Strong admixture was observed in both Central and Eastern Sahelian populations, with North Africans and Near Eastern/Arabians, respectively, but it was inexistent in Western Sahelian populations. Genome-wide local ancestry inference in admixed Sahelian populations revealed several candidate regions that were significantly enriched for non-autochthonous haplotypes, and many showed to be under positive selection. The DARC gene region in Arabs and Nubians was enriched for African ancestry, whereas the RAB3GAP1/LCT/MCM6 region in Oromo, the TAS2R gene family in Fulani, and the ALMS1/NAT8 in Turkana and Samburu were enriched for non-African ancestry. Signals of positive selection varied in terms of geographic amplitude. Some genomic regions were selected across the Belt, the most striking example being the malaria-related DARC gene. Others were Western-specific (oxytocin, calcium, and heart pathways), Eastern-specific (lipid pathways), or even population-restricted (TAS2R genes in Fulani, which may reflect sexual selection). PMID:26614524

  14. Implications of the Admixture Process in Skin Color Molecular Assessment

    PubMed Central

    de Cerqueira, Caio Cesar Silva; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice. PMID:24809478

  15. Robust Entrainment of Circadian Oscillators Requires Specific Phase Response Curves

    PubMed Central

    Pfeuty, Benjamin; Thommen, Quentin; Lefranc, Marc

    2011-01-01

    The circadian clocks keeping time in many living organisms rely on self-sustained biochemical oscillations entrained by external cues, such as light, to the 24-h cycle induced by Earth's rotation. However, environmental cues are unreliable due to the variability of habitats, weather conditions, or cue-sensing mechanisms among individuals. A tempting hypothesis is that circadian clocks have evolved so as to be robust to fluctuations in the signal that entrains them. To support this hypothesis, we analyze the synchronization behavior of weakly and periodically forced oscillators in terms of their phase response curve (PRC), which measures phase changes induced by a perturbation applied at different times of the cycle. We establish a general relationship between the robustness of key entrainment properties, such as stability and oscillator phase, on the one hand, and the shape of the PRC as characterized by a specific curvature or the existence of a dead zone, on the other hand. The criteria obtained are applied to computational models of circadian clocks and account for the disparate robustness properties of various forcing schemes. Finally, the analysis of PRCs measured experimentally in several organisms strongly suggests a case of convergent evolution toward an optimal strategy for maintaining a clock that is accurate and robust to environmental fluctuations. PMID:21641300

  16. microRNA modulation of circadian clock period and entrainment

    PubMed Central

    Cheng, Hai-Ying M.; Papp, Joseph W.; Varlamova, Olga; Dziema, Heather; Russell, Brandon; Curfman, John P.; Nakazawa, Takanobu; Shimizu, Kimiko; Okamura, Hitoshi; Impey, Soren; Obrietan, Karl

    2007-01-01

    microRNAs (miRNAs) are a class of small, non-coding, RNAs that regulate the stability or translation of mRNA transcripts. Although recent work has implicated miRNAs in development and in disease, the expression and function of miRNAs in the adult mammalian nervous system has not been extensively characterized. Here, we examine the role of two brain-specific miRNAs, miR-219 and miR-132, in modulating the circadian clock located in the suprachiasmatic nucleus. miR-219 is a target of the CLOCK/BMAL1 complex, exhibits robust circadian rhythms of expression and the in vivo knockdown of miR-219 lengthens the circadian period. miR-132 is induced by photic entrainment cues via a MAPK/CREB-dependent mechanism, modulates clock gene expression, and attenuates the entraining effects of light. Collectively, these data reveal miRNAs as clock- and light-regulated genes and provide a mechanistic examination of their roles as effectors of pacemaker activity and entrainment. PMID:17553428

  17. Constant darkness restores entrainment to phase-delayed Siberian hamsters.

    PubMed

    Ruby, Norman F; Joshi, Nirav; Heller, H Craig

    2002-12-01

    Over 90% of Siberian hamsters (Phodopus sungorus) fail to reentrain to a 5-h phase delay of a 16:8-h photocycle. Because constant darkness (DD) restores rhythms disrupted by constant light, we tested whether DD could also restore entrainment. DD began 0, 5, or 14 days after a 5-h phase delay, and the light-dark cycle was reinstated 14 days later. All hamsters exposed to DD on day 0 reentrained, whereas 42% reentrained irrespective of whether DD began 5 or 14 days later. For these latter two groups, tau (tau) and alpha (alpha) in DD predicted reentrainment; animals that reentrained had a mean tau and alpha of 24.1 and 8.9 h, respectively, whereas those that failed to reentrain maintained a mean tau and alpha of 25.0 and of 7.1 h, respectively. Restoration of entrainment by DD is somewhat paradoxical because it suggests that reentrainment to the photocycle was prevented by continued exposure to that same photocycle. The dichotomy of circadian responses to DD suggests "entrainment" phenotypes that are similar to those of photoperiodic responders and nonresponders.

  18. Presence of strong harmonics during visual entrainment: a magnetoencephalography study.

    PubMed

    Heinrichs-Graham, Elizabeth; Wilson, Tony W

    2012-09-01

    Visual neurons are known to synchronize their firing with stimuli that flicker at a constant rate (e.g. 12Hz). These so-called visual steady-state responses (VSSR) are a well-studied phenomenon, yet the underlying mechanisms are widely disagreed upon. Furthermore, there is limited evidence that visual neurons may simultaneously synchronize at harmonics of the stimulation frequency. We utilized magnetoencephalography (MEG) to examine synchronization at harmonics of the visual stimulation frequency (18Hz). MEG data were analyzed for event-related-synchronization (ERS) at the fundamental frequency, 36, 54, and 72Hz. We found strong ERS in all bands. Only 31% of participants showed maximum entrainment at the fundamental; others showed stronger entrainment at either 36 or 54Hz. The cortical foci of these responses indicated that the harmonics involved cortices that were partially distinct from the fundamental. These findings suggest that spatially-overlapping subpopulations of neurons are simultaneously entrained at different harmonics of the stimulus frequency. PMID:22569101

  19. Neural entrainment to the rhythmic structure of music.

    PubMed

    Tierney, Adam; Kraus, Nina

    2015-02-01

    The neural resonance theory of musical meter explains musical beat tracking as the result of entrainment of neural oscillations to the beat frequency and its higher harmonics. This theory has gained empirical support from experiments using simple, abstract stimuli. However, to date there has been no empirical evidence for a role of neural entrainment in the perception of the beat of ecologically valid music. Here we presented participants with a single pop song with a superimposed bassoon sound. This stimulus was either lined up with the beat of the music or shifted away from the beat by 25% of the average interbeat interval. Both conditions elicited a neural response at the beat frequency. However, although the on-the-beat condition elicited a clear response at the first harmonic of the beat, this frequency was absent in the neural response to the off-the-beat condition. These results support a role for neural entrainment in tracking the metrical structure of real music and show that neural meter tracking can be disrupted by the presentation of contradictory rhythmic cues.

  20. Entrainment of respiratory frequency to exercise rhythm during hypoxia.

    PubMed

    Paterson, D J; Wood, G A; Marshall, R N; Morton, A R; Harrison, A B

    1987-05-01

    Breathing frequency (f) is often reported as having an integer-multiple relationship to limb movement (entrainment) during rhythmic exercise. To investigate the strength of this coupling while running under hypoxic conditions, two male Caucasians and four male Nepalese porters were tested in the Annapurna region of the Himalayas at altitudes of 915, 2,135, 3,200, 4,420, and 5,030 m. In an additional study in a laboratory at sea level, three male and four female subjects inspired various O2-N2 mixtures [fraction of inspired O2 (FIO2) = 20.93, 17.39, 14.40, 11.81%] that were administered in a single-blind randomized fashion during a treadmill run (40% FIO2 maximum O2 consumption). Breathing and gait signals were stored on FM tape and later processed on a PDP 11/73 computer. The subharmonic relationships between these signals were determined from Fourier analysis (power spectrum), and the coincidence of coupling occurrence was statistically modeled. Entrainment decreased linearly during increasing hypoxia (P less than 0.01). Moreover, a significant linear increase in f occurred during hypoxia (P less than 0.05), whereas stride frequency and metabolic rate remained constant, suggesting that hypoxic-induced increases in f decreased the degree of entrainment. PMID:3597249

  1. Entrainment of coarse grains using a discrete particle model

    SciTech Connect

    Valyrakis, Manousos; Arnold, Roger B. Jr.

    2014-10-06

    Conventional bedload transport models and incipient motion theories relying on a time-averaged boundary shear stress are incapable of accounting for the effects of fluctuating near-bed velocity in turbulent flow and are therefore prone to significant errors. Impulse, the product of an instantaneous force magnitude and its duration, has been recently proposed as an appropriate criterion for quantifying the effects of flow turbulence in removing coarse grains from the bed surface. Here, a discrete particle model (DPM) is used to examine the effects of impulse, representing a single idealized turbulent event, on particle entrainment. The results are classified according to the degree of grain movement into the following categories: motion prior to entrainment, initial dislodgement, and energetic displacement. The results indicate that in all three cases the degree of particle motion depends on both the force magnitude and the duration of its application and suggest that the effects of turbulence must be adequately accounted for in order to develop a more accurate method of determining incipient motion. DPM is capable of simulating the dynamics of grain entrainment and is an appropriate tool for further study of the fundamental mechanisms of sediment transport.

  2. Velocity response curves demonstrate the complexity of modeling entrainable clocks.

    PubMed

    Taylor, Stephanie R; Cheever, Allyson; Harmon, Sarah M

    2014-12-21

    Circadian clocks are biological oscillators that regulate daily behaviors in organisms across the kingdoms of life. Their rhythms are generated by complex systems, generally involving interlocked regulatory feedback loops. These rhythms are entrained by the daily light/dark cycle, ensuring that the internal clock time is coordinated with the environment. Mathematical models play an important role in understanding how the components work together to function as a clock which can be entrained by light. For a clock to entrain, it must be possible for it to be sped up or slowed down at appropriate times. To understand how biophysical processes affect the speed of the clock, one can compute velocity response curves (VRCs). Here, in a case study involving the fruit fly clock, we demonstrate that VRC analysis provides insight into a clock׳s response to light. We also show that biochemical mechanisms and parameters together determine a model׳s ability to respond realistically to light. The implication is that, if one is developing a model and its current form has an unrealistic response to light, then one must reexamine one׳s model structure, because searching for better parameter values is unlikely to lead to a realistic response to light. PMID:25193284

  3. Entrainment of granular substrate by pyroclastic flows: an experimental study and its implications for flow dynamics

    NASA Astrophysics Data System (ADS)

    Roche, O.; Niño, Y.; Mangeney, A.; Brand, B. D.; Valentine, G. A.

    2012-12-01

    Pyroclastic flows deposits may contain lithics entrained from an unconsolidated granular substrate on which the flows emplaced. In order to address this issue, analog experiments on dense gas-particle flows propagating on a horizontal granular layer were carried out to elucidate the entrainment mechanisms and to infer the dynamics of pyroclastic flows. The experimental flows were generated from the release of gas-fluidized columns of fine (80 μm) particles in a horizontal channel whose base was made of an unconsolidated granular layer. The flows consisted of a fluidized air-particles mixture, and the small hydraulic permeability of the material allowed for long-lived high interstitial pore fluid pressure during emplacement. Basal pore pressure measurements in preliminary experiments involving a rigid substrate revealed that the sliding head of the flows generated a dynamic underpressure (relative to atmosphere) proportional to the square of the front velocity. As such underpressure at the flow base was likely to promote an upward pressure gradient that could cause uplift of particles of a granular substrate, we did a theoretical analysis in order to determine the critical underpressure and the corresponding flow velocity (Uc) at which uplift could occur. This analysis showed that Uc~(dρpg/Cρ)1/2 for spherical particles, where d and ρp are the particle diameter and density, respectively, C is an empirical constant, and is ρ is the bulk flow density. It was validated with experiments on flows propagating on 3 cm-thick substrates of steel beads of diameter d=1.6 mm. The beads were first dragged horizontally individually due to basal shear, and onset of uplift did occur at Uc~0.9 m/s. The beads uplifted were incorporated within the flow base, to a height that increased up to 6-8 mm at flow velocities up to 2.5-3 m/s, and were entrained over distances of several tens of cm representing a significant part of the flow runout. The flow deposits hence had a well

  4. Flow Transformation in Pyroclastic Density Currents: Entrainment and Granular Dynamics during the 2006 eruption of Tungurahua

    NASA Astrophysics Data System (ADS)

    Dufek, J.; Benage, M. C.; Geist, D.; Harpp, K. S.

    2013-12-01

    have conducted high resolution simulations in concert with detailed measurements of these flows from both up flow and down flow from the transformation to document the process of dense to dilute flow transition. The field characterization includes mapping of the flows, grain size analysis, documenting flow direction indicators, comminution rounding, thermal proxies for air entrainment, and bed form documentation. We used a three-dimensional, multiphase (Eulerian-Eulerian-Lagrangian, EEL) modeling approach to describe size sorting, concentration gradients, and stresses in these evolving flows using the topography of the near Chambo River crossing (Dufek and Bergantz, 2007a; Dufek and Bertgantz, 2007b). The numerical models reveal extensive entrainment in the surge-generating phase of the flow, and secondary plume generation as fine ash in transported by hot gases higher into the atmosphere. Granular waves develop in the confined channels of the dense flow resulting bed shear stress perturbations. These granular instabilities and entrainment result in pulsing conditions in the surge, accounting for much of the unsteady behavior that results in fluctuations in grain size and bed form in the surge deposits.

  5. Entrainment and Microphysics in DYCOMS-II Stratocumulus

    NASA Astrophysics Data System (ADS)

    Gerber, H. E.; Frick, G.; Malinowski, S.; Burnet, F.; Brenguier, J.

    2005-12-01

    During the nine DYCOMS-II flights through stratocumulus (Sc) off the California Coast with the NCAR C-130 research aircraft measurements of thermodynamics and microphysics were made with unprecedented resolution by three co-located probes. The UFT (ultra-fast temperature probe; U. of Warsaw) and the PVM (LWC and effective radius; Gerber Scientific) measured incloud with a resolution of 10 cm, and the FFSSP (fast FSSP; Meteo-France) measured with a resolution of 2 m. Our measurements and their analyses have led to an improved understanding of the physical processes associated with entrainment and its affect on Sc microphysics. We describe our results including the following: Cloud-top interacts with the warm and dry free atmosphere above the Sc to create the EIL (entrainment interface layer) several tens of m thick on the average. Further cloud detrains and mixes with the EIL to generate cloud-free moisture and temperature conditions ranging between cloud-top and free-atmosphere conditions. Buoyancy sorting occurs in the EIL with some parcels approaching the buoyancy at cloud-top. At that point these parcels enter cloud in a near thermodynamically-neutral fashion as shown by comparing UFT measurements in entrainment features ("cloud holes") with unaffected adjacent cloud, and in a mixing manner that resembles inhomogeneous mixing by diluting droplet number but not reducing their size as shown by the PVM and the FFSSP. This behavior occurs despite nearly all the Sc showing strong CTEI (cloud-top entrainment instability). Thus cooling due to the evaporation of cloud water contributes a negligible amount to buoyancy production at cloud top, it simply contributes a small amount to conditioning the EIL. Further, supersaturation transients caused by mixing of saturated parcels at different temperature near cloud top are not present. We find that the holes with LWC reduced by entrainment and embedded in down-welling regions caused by radiative cooling can reach their SEL

  6. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs.

    PubMed

    Monzón, J; Kays, R; Dykhuizen, D E

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single-nucleotide polymorphisms in 427 canids to examine the prevalence, spatial distribution and the ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, revealed a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. PMID:24148003

  7. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs

    PubMed Central

    Monzón, J.; Kays, R.; Dykhuizen, D. E.

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single nucleotide polymorphisms in 427 canids in order to examine the prevalence, spatial distribution, and ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, reveal a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. PMID:24148003

  8. A deterministic model of admixture and genetic introgression: the case of Neanderthal and Cro-Magnon.

    PubMed

    Forhan, Gerald; Martiel, Jean-Louis; Blum, Michael G B

    2008-11-01

    There is an ongoing debate in the field of human evolution about the possible contribution of Neanderthals to the modern human gene pool. To study how the Neanderthal private alleles may have spread over the genes of Homo sapiens, we propose a deterministic model based on recursive equations and ordinary differential equations. If the Neanderthal population was large compared to the Homo sapiens population at the beginning of the contact period, we show that genetic introgression should have been fast and complete meaning that most of the Neanderthal private alleles should be found in the modern human gene pool in case of ancient admixture. In order to test/reject ancient admixture from genome-wide data, we incorporate the model of genetic introgression into a statistical hypothesis-testing framework. We show that the power to reject ancient admixture increases as the ratio, at the time of putative admixture, of the population size of Homo sapiens over that of Neanderthal decreases. We find that the power to reject ancient admixture might be particularly low if the population size of Homo sapiens was comparable to the Neanderthal population size.

  9. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs.

    PubMed

    Monzón, J; Kays, R; Dykhuizen, D E

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single-nucleotide polymorphisms in 427 canids to examine the prevalence, spatial distribution and the ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, revealed a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers.

  10. A deterministic model of admixture and genetic introgression: the case of Neanderthal and Cro-Magnon.

    PubMed

    Forhan, Gerald; Martiel, Jean-Louis; Blum, Michael G B

    2008-11-01

    There is an ongoing debate in the field of human evolution about the possible contribution of Neanderthals to the modern human gene pool. To study how the Neanderthal private alleles may have spread over the genes of Homo sapiens, we propose a deterministic model based on recursive equations and ordinary differential equations. If the Neanderthal population was large compared to the Homo sapiens population at the beginning of the contact period, we show that genetic introgression should have been fast and complete meaning that most of the Neanderthal private alleles should be found in the modern human gene pool in case of ancient admixture. In order to test/reject ancient admixture from genome-wide data, we incorporate the model of genetic introgression into a statistical hypothesis-testing framework. We show that the power to reject ancient admixture increases as the ratio, at the time of putative admixture, of the population size of Homo sapiens over that of Neanderthal decreases. We find that the power to reject ancient admixture might be particularly low if the population size of Homo sapiens was comparable to the Neanderthal population size. PMID:18768141

  11. Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure

    PubMed Central

    Mimno, David; Blei, David M.; Engelhardt, Barbara E.

    2015-01-01

    Admixture models are a ubiquitous approach to capture latent population structure in genetic samples. Despite the widespread application of admixture models, little thought has been devoted to the quality of the model fit or the accuracy of the estimates of parameters of interest for a particular study. Here we develop methods for validating admixture models based on posterior predictive checks (PPCs), a Bayesian method for assessing the quality of fit of a statistical model to a specific dataset. We develop PPCs for five population-level statistics of interest: within-population genetic variation, background linkage disequilibrium, number of ancestral populations, between-population genetic variation, and the downstream use of admixture parameters to correct for population structure in association studies. Using PPCs, we evaluate the quality of the admixture model fit to four qualitatively different population genetic datasets: the population reference sample (POPRES) European individuals, the HapMap phase 3 individuals, continental Indians, and African American individuals. We found that the same model fitted to different genomic studies resulted in highly study-specific results when evaluated using PPCs, illustrating the utility of PPCs for model-based analyses in large genomic studies. PMID:26071445

  12. Mechanical Characteristics of Hardened Concrete with Different Mineral Admixtures: A Review

    PubMed Central

    2014-01-01

    The available literature identifies that the addition of mineral admixture as partial replacement of cement improves the microstructure of the concrete (i.e., porosity and pore size distribution) as well as increasing the mechanical characteristics such as drying shrinkage and creep, compressive strength, tensile strength, flexural strength, and modulus of elasticity; however, no single document is available in which review and comparison of the influence of the addition of these mineral admixtures on the mechanical characteristics of the hardened pozzolanic concretes are presented. In this paper, based on the reported results in the literature, mechanical characteristics of hardened concrete partially containing mineral admixtures including fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA) are discussed and it is concluded that the content and particle size of mineral admixture are the parameters which significantly influence the mechanical properties of concrete. All mineral admixtures enhance the mechanical properties of concrete except FA and GGBS which do not show a significant effect on the strength of concrete at 28 days; however, gain in strength at later ages is considerable. Moreover, the comparison of the mechanical characteristics of different pozzolanic concretes suggests that RHA and SF are competitive. PMID:24688443

  13. Audience entrainment during live contemporary dance performance: physiological and cognitive measures

    PubMed Central

    Bachrach, Asaf; Fontbonne, Yann; Joufflineau, Coline; Ulloa, José Luis

    2015-01-01

    Perceiving and synchronizing to a piece of dance is a remarkable skill in humans. Research in this area is very recent and has been focused mainly on entrainment produced by regular rhythms. Here, we investigated entrainment effects on spectators perceiving a non-rhythmic and extremely slow performance issued from contemporary dance. More specifically, we studied the relationship between subjective experience and entrainment produced by perceiving this type of performance. We defined two types of entrainment. Physiological entrainment corresponded to cardiovascular and respiratory coordinated activities. Cognitive entrainment was evaluated through cognitive tasks that quantified time distortion. These effects were thought to reflect attunement of a participant’ internal temporal clock to the particularly slow pace of the danced movement. Each participant’ subjective experience—in the form of responses to questionnaires—were collected and correlated with cognitive and physiological entrainment. We observe: (a) a positive relationship between psychological entrainment and attention to breathing (their own one or that of dancers); and (b) a positive relationship between cognitive entrainment (reflected as an under-estimation of time following the performance) and attention to their own breathing, and attention to the muscles’ dancers. Overall, our results suggest a close relationship between attention to breathing and entrainment. This proof-of-concept pilot study was intended to prove the feasibility of a quantitative situated paradigm. This research is inscribed in a large-scale interdisciplinary project of dance spectating (labodanse.org). PMID:25999831

  14. Genetic admixture and lineage separation in a southern Andean plant.

    PubMed

    Morello, Santiago; Sede, Silvana M

    2016-01-01

    varieties of E. alpina: var. alpina is more closely related to E. rubra and other species than to its own counterpart E. alpina var. carmelitana Geometric morphometrics analysis (Elliptic Fourier descriptors) revealed significant differences in leaf shape between varieties. We found that diversity in Escallonia species analyzed here is geographically structured and deep divergence between varieties of E. alpina could be associated to ancient evolutionary events like orogeny. Admixture in southern populations could be the result of hybridization at the margins of the parental species' distribution range.

  15. Genetic admixture and lineage separation in a southern Andean plant

    PubMed Central

    Morello, Santiago; Sede, Silvana M.

    2016-01-01

    varieties of E. alpina: var. alpina is more closely related to E. rubra and other species than to its own counterpart E. alpina var. carmelitana. Geometric morphometrics analysis (Elliptic Fourier descriptors) revealed significant differences in leaf shape between varieties. We found that diversity in Escallonia species analyzed here is geographically structured and deep divergence between varieties of E. alpina could be associated to ancient evolutionary events like orogeny. Admixture in southern populations could be the result of hybridization at the margins of the parental species’ distribution range. PMID:27179539

  16. Genetic admixture and lineage separation in a southern Andean plant.

    PubMed

    Morello, Santiago; Sede, Silvana M

    2016-01-01

    varieties of E. alpina: var. alpina is more closely related to E. rubra and other species than to its own counterpart E. alpina var. carmelitana Geometric morphometrics analysis (Elliptic Fourier descriptors) revealed significant differences in leaf shape between varieties. We found that diversity in Escallonia species analyzed here is geographically structured and deep divergence between varieties of E. alpina could be associated to ancient evolutionary events like orogeny. Admixture in southern populations could be the result of hybridization at the margins of the parental species' distribution range. PMID:27179539

  17. Doing Duo - a case study of entrainment in William Forsythe's choreography "Duo".

    PubMed

    Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E

    2014-01-01

    Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe's choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models.

  18. Doing Duo - a case study of entrainment in William Forsythe's choreography "Duo".

    PubMed

    Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E

    2014-01-01

    Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe's choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models. PMID:25374522

  19. Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA

    NASA Astrophysics Data System (ADS)

    Bercovici, Sivan; Geiger, Dan

    Admixture mapping is a gene mapping approach used for the identification of genomic regions harboring disease susceptibility genes in the case of recently admixed populations such as African Americans. We present a novel method for admixture mapping, called admixture aberration analysis (AAA), that uses a DNA pool of affected admixed individuals. We demonstrate through simulations that AAA is a powerful and economical mapping method under a range of scenarios, capturing complex human diseases such as hypertension and end stage kidney disease. The method has a low false-positive rate and is robust to deviation from model assumptions. Finally, we apply AAA on 600 prostate cancer-affected African Americans, replicating a known risk locus. Simulation results indicate that the method can yield over 96% reduction in genotyping. Our method is implemented as a Java program called AAAmap and is freely available.

  20. An experimental investigation of flow patterns and liquid entrainment in a horizontal-tube evaporator

    NASA Astrophysics Data System (ADS)

    Barnhart, John Steven

    An experimental study of two-phase flow patterns and droplet entrainment in a horizontal-tube evaporator was conducted. Measurements were made with serpentine aluminum and glass evaporators with geometries typical of those used for domestic refrigeration. The refrigerant in the majority of tests was R134a, which will replace R12 for refrigeration and automotive air-conditioning in 1995. The phenomenon of primary interest was the nonequilibrium transport of droplets within superheated vapor at the evaporator exit. Of particular concern were substantial variations in the liquid rate with time, and corresponding fluctuations in exit temperature. These variations are due to the formation of slugs which rapidly transport a surplus of liquid toward the exit. A flow loop was constructed to circulate oil-free refrigerant through the evaporator under widely varying conditions. Liquid carry over (expressed as a dimensionless entrained mass fraction, EMF) was measured as a function of inlet quality, heat flux, mass flux, and exit superheat. A laser-based phase/Doppler particle analyzer was used to measure droplet diameters and velocities at the evaporator exit. Tests with three refrigerants over wide ranges of operating conditions revealed time-averaged EMF's of no more than 0.1 percent. Analysis of variance showed exit superheat to have the strongest effect, followed by mass flux, inlet quality, and heat flux. Time-averaged EMF's varied with operating conditions by several orders of magnitude, decreasing with increasing superheat level (due to lower entrainment rates near the exit and more rapid droplet vaporization) and mass flux and inlet quality (due to reduced slug formation). The incidence of slug flow and its effect on evaporator exit conditions were documented in time-resolved experiments, using techniques such as auto- and cross-correlation and Fourier transform. Time-resolved EMF's as high as one percent were observed, as well as sharp reductions in exit superheat

  1. Influence of the Entrainment Interface Layer on Cloud Microphysical Properties near Stratocumulus Top

    NASA Astrophysics Data System (ADS)

    Chuang, P. Y.; Carman, J. K.; Rossiter, D. L.

    2010-12-01

    Entrainment across the stratocumulus-topped boundary layer is a key process governing the cloud properties and evolution. This process is not well-represented even in high-resolution large-eddy simulations, in part due to the sharp gradients in temperature, buoyancy and (usually) humidity that occur at the top of the boundary layer. In summer 2008, the Physics of Stratocumulus Top (POST) field campaign conduct extensive measurements in the vicinity of cloud top, including the so-called entrainment interface layer or EIL that separates boundary layer and free tropospheric air. Roughly half of the fifteen flights occurred during the day (near solar noon) while the remaining flights occurred during late evening-to-night when solar input was minimal. A wide diversity of EIL properties has been revealed over the course of the campaign. EIL vertical thickness diagnosed using total water varies from fairly thin (~20 m) to very thick (>100 m). The thickness and intensity of the turbulent layer in this interfacial region also varies substantially, with the top of the significantly turbulent region ranging from 10 m to 50 m above cloud top. Shear in the vicinity of cloud top also varied strongly from day-to-day. While almost all cases exhibited strong jumps in potential temperature, there are a number of cases where the jump in total water was very small-to-none, and one case where total water was higher in the free troposphere by 1.4 g/kg. POST thus demonstrates that the cloud-top interfacial region exhibits a rich and diverse range of properties. This study focuses on how this EIL diversity affects the stratocumulus cloud itself. We build on our study of the EIL dynamic and thermodynamic properties to investigate the influence of the EIL on the microphysical properties of the stratocumulus in the vicinity of cloud top. Entrainment of the overlying warmer and (usually) drier air can strongly impact the amount of liquid water as well as the size and concentration of cloud

  2. Photic resetting and entrainment in CLOCK-deficient mice.

    PubMed

    Dallmann, Robert; DeBruyne, Jason P; Weaver, David R

    2011-10-01

    Mice lacking the CLOCK protein have a relatively subtle circadian phenotype, including a slightly shorter period in constant darkness, differences in phase resetting after 4-hour light pulses in the early and late night, and a variably advanced phase angle of entrainment in a light-dark (LD) cycle. The present series of experiments was conducted to more fully characterize the circadian phenotype of Clock(-/-) mice under various lighting conditions. A phase-response curve (PRC) to 4-hour light pulses in free-running mice was conducted; the results confirm that Clock(-/-) mice exhibit very large phase advances after 4-hour light pulses in the late subjective night but have relatively normal responses to light at other phases. The abnormal shape of the PRC to light may explain the tendency of CLOCK-deficient mice to begin activity before lights-out when housed in a 12-hour light:12-hour dark lighting schedule. To assess this relationship further, Clock(-/-) and wild-type control mice were entrained to skeleton lighting cycles (1L:23D and 1L:10D:1L:12D). Comparing entrainment under the 2 types of skeleton photoperiods revealed that exposure to 1-hour light in the morning leads to a phase advance of activity onset (expressed the following afternoon) in Clock(-/-) mice but not in the controls. Constant light typically causes an intensity-dependent increase in circadian period in mice, but this did not occur in CLOCK-deficient mice. The failure of Clock(-/-) mice to respond to the period-lengthening effect of constant light likely results from the increased functional impact of light falling in the phase advance zone of the PRC. Collectively, these experiments reveal that alterations in the response of CLOCK-deficient mice to light in several paradigms are likely due to an imbalance in the shape of the PRC to light.

  3. Entrainment of circadian clocks in mammals by arousal and food.

    PubMed

    Mistlberger, Ralph E; Antle, Michael C

    2011-06-30

    Circadian rhythms in mammals are regulated by a system of endogenous circadian oscillators (clock cells) in the brain and in most peripheral organs and tissues. One group of clock cells in the hypothalamic SCN (suprachiasmatic nuclei) functions as a pacemaker for co-ordinating the timing of oscillators elsewhere in the brain and body. This master clock can be reset and entrained by daily LD (light-dark) cycles and thereby also serves to interface internal with external time, ensuring an appropriate alignment of behavioural and physiological rhythms with the solar day. Two features of the mammalian circadian system provide flexibility in circadian programming to exploit temporal regularities of social stimuli or food availability. One feature is the sensitivity of the SCN pacemaker to behavioural arousal stimulated during the usual sleep period, which can reset its phase and modulate its response to LD stimuli. Neural pathways from the brainstem and thalamus mediate these effects by releasing neurochemicals that inhibit retinal inputs to the SCN clock or that alter clock-gene expression in SCN clock cells. A second feature is the sensitivity of circadian oscillators outside of the SCN to stimuli associated with food intake, which enables animals to uncouple rhythms of behaviour and physiology from LD cycles and align these with predictable daily mealtimes. The location of oscillators necessary for food-entrained behavioural rhythms is not yet certain. Persistence of these rhythms in mice with clock-gene mutations that disable the SCN pacemaker suggests diversity in the molecular basis of light- and food-entrainable clocks. PMID:21819388

  4. The role of organic compounds in cloud formation: Relative importance of entrainment, co-condensation and particle-phase properties

    NASA Astrophysics Data System (ADS)

    Lowe, Samuel; Partridge, Daniel; Topping, David; Riipinen, Ilona

    2016-04-01

    The organic fraction of atmospheric aerosols is widely acknowledged to affect the cloud nucleating potential of aerosols. Cloud droplet formation through activation of non-volatile CCN is considered to be relatively well understood, however, there are fewer systematic studies on the activation of aerosols containing semi-volatile organic compounds that co-condense alongside water vapour, thus enhancing CCN activity. Although the significance of co-condensation of organic vapours for cloud droplet number concentration predictions has recently been identified, it remains uncertain how this process may interact with atmospheric dynamics. In addition to co-condensation of existing in-cloud material, additional semi-volatile mass can be entrained from the surrounding environment. Reduced cloud droplet number concentrations are expected as the parcel is diluted with clean air; however, additional soluble mass in the particle phase promotes droplet activation. The extent of increased droplet activation due to co-condensation relies also on the physiochemical properties of the organic compounds, as seen in several other phase partitioning sensitivity studies. In this work we study the simultaneous impact of entrainment and co-condensation, the relative importance of these two processes at different atmospheric conditions, their interactions with each other, and the particle-phase chemistry in terms of cloud microphysical properties and their parametric sensitivities. To assess the importance of the entrainment of semi-volatile materials as compared with their co-condensation and chemical properties, a pseudo-adiabatic cloud parcel model with a detailed description of bin microphysics is employed. We have added the co-condensation process to the model such that it is coupled with the parametric entrainment representation. The effects of entrainment and co-condensation are benchmarked independently and simultaneously against a control simulation. Furthermore, we probe the

  5. Effects of drying conditions, admixtures and specimen size on shrinkage strains

    SciTech Connect

    Al-Saleh, Saleh A. . E-mail: alsaleh@dr.com; Al-Zaid, Rajeh Z.

    2006-10-15

    The paper presents the results of an experimental investigation on the effects of drying conditions, specimen size and presence of plasticizing admixture on the development of shrinkage strains. The measurements are taken in a harsh (50 deg. C and 5% R.H.) and a moderate environment (28 deg. C and 50% R.H.). The results include strain development at various levels of cross sections of concrete prisms. The drying conditions are found to be the dominant parameter affecting the shrinkage strain development particularly in specimens of smaller sizes. The effect of plasticizing admixture on shrinkage strains is negligible.

  6. Attraction and social coordination: mutual entrainment of vocal activity rhythms.

    PubMed

    McGarva, Andrew R; Warner, Rebecca M

    2003-05-01

    To investigate factors that affect the mutual entrainment of vocal activity rhythms, female general psychology students paired according to attitude similarity questionnaires engaged in 40-minute introductory conversations. Fourier analyses performed on speakers' on-off vocal activity demonstrated periodic oscillations in talkativeness. Although some dyads coordinated their vocal activity rhythms, speech accommodation was not predicted by attitude similarity or attraction and did not affect ratings of conversation quality. These rhythms of dialogue appear resistant to change, their behavioral momentum rooted perhaps in an underlying chronobiology. PMID:12845943

  7. Attraction and social coordination: mutual entrainment of vocal activity rhythms.

    PubMed

    McGarva, Andrew R; Warner, Rebecca M

    2003-05-01

    To investigate factors that affect the mutual entrainment of vocal activity rhythms, female general psychology students paired according to attitude similarity questionnaires engaged in 40-minute introductory conversations. Fourier analyses performed on speakers' on-off vocal activity demonstrated periodic oscillations in talkativeness. Although some dyads coordinated their vocal activity rhythms, speech accommodation was not predicted by attitude similarity or attraction and did not affect ratings of conversation quality. These rhythms of dialogue appear resistant to change, their behavioral momentum rooted perhaps in an underlying chronobiology.

  8. The effects of chronic marijuana use on circadian entrainment.

    PubMed

    Whitehurst, Lauren N; Fogler, Kethera; Hall, Kate; Hartmann, Matthew; Dyche, Jeff

    2015-05-01

    Animal literature suggests a connection between marijuana use and altered circadian rhythms. However, the effect has not yet been demonstrated in humans. The present study examined the effect of chronic marijuana use on human circadian function. Participants consisted of current users who reported smoking marijuana daily for at least a year and non-marijuana user controls. Participants took a neurocognitive assessment, wore actigraphs and maintained sleep diaries for three weeks. While no significant cognitive changes were found between groups, data revealed that chronic marijuana use may act as an additional zeitgeber and lead to increased entrainment in human users.

  9. Effects of continuous chlorination on entrained estuarine plankton

    SciTech Connect

    Erickson, S.J.; Foulk, H.R.

    1980-01-01

    Technical report: The effects of continuous chlorination in running sea water on entrained plankton were examined. The concentration of ATP was used as an indicator of biomass because: it is present in all living cells; the concentration is proportional to the living biomass; and dead cells lose ATP rapidly. Effects were measured by bioluminescence; luciferin-luciferase reagents from firefly lanterns were used to analyze ATP concentration. Results indicate that ATP measurement is an accurate, effective means of evaluating damage done to planktonic organisms by continuous chlorination. Further studies of the effects of low-concentration, continuous chlorination are recommended. (13 references, 1 table)

  10. Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

    DOE PAGES

    Yum, Seong Soo; Wang, Jian; Liu, Yangang; Senum, Gunnar; Springston, Stephen; McGraw, Robert; Yeom, Jae Min

    2015-05-27

    Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurementsmore » were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.« less

  11. Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

    SciTech Connect

    Yum, Seong Soo; Wang, Jian; Liu, Yangang; Senum, Gunnar; Springston, Stephen; McGraw, Robert; Yeom, Jae Min

    2015-05-27

    Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurements were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.

  12. Cloud microphysical relationships and their implication on entrainment and mixing mechanisms for marine and continental stratocumulus clouds

    NASA Astrophysics Data System (ADS)

    Yum, S. S.; Yeom, J. M.; Wang, J.; Liu, Y.; Senum, G.; Springston, S. R.; McGraw, R. L.; Lu, C.

    2015-12-01

    Cloud microphysical data obtained from aircraft measurements of stratocumulus clouds over the southeastern pacific during the VOCALS-Rex field campaign and over the Great Plains region in Oklahoma during the RACORO field campaign were analyzed for evidence of entrainment mixing of air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at various rates (1 Hz, 10 Hz and 40 Hz). For the maritime stratocumulus clouds, the dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurements were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top. For the continental stratocumulus clouds, the positive relationship between V and L was even more pronounced while the scale parameters were less indicative of inhomogeneous mixing. Finding evidence for vertical circulation mixing was difficult for these clouds because flight plans in this campaign were not designed to investigate such process.

  13. Irregular Speech Rate Dissociates Auditory Cortical Entrainment, Evoked Responses, and Frontal Alpha

    PubMed Central

    Kayser, Stephanie J.; Ince, Robin A.A.; Gross, Joachim

    2015-01-01

    The entrainment of slow rhythmic auditory cortical activity to the temporal regularities in speech is considered to be a central mechanism underlying auditory perception. Previous work has shown that entrainment is reduced when the quality of the acoustic input is degraded, but has also linked rhythmic activity at similar time scales to the encoding of temporal expectations. To understand these bottom-up and top-down contributions to rhythmic entrainment, we manipulated the temporal predictive structure of speech by parametrically altering the distribution of pauses between syllables or words, thereby rendering the local speech rate irregular while preserving intelligibility and the envelope fluctuations of the acoustic signal. Recording EEG activity in human participants, we found that this manipulation did not alter neural processes reflecting the encoding of individual sound transients, such as evoked potentials. However, the manipulation significantly reduced the fidelity of auditory delta (but not theta) band entrainment to the speech envelope. It also reduced left frontal alpha power and this alpha reduction was predictive of the reduced delta entrainment across participants. Our results show that rhythmic auditory entrainment in delta and theta bands reflect functionally distinct processes. Furthermore, they reveal that delta entrainment is under top-down control and likely reflects prefrontal processes that are sensitive to acoustical regularities rather than the bottom-up encoding of acoustic features. SIGNIFICANCE STATEMENT The entrainment of rhythmic auditory cortical activity to the speech envelope is considered to be critical for hearing. Previous work has proposed divergent views in which entrainment reflects either early evoked responses related to sound encoding or high-level processes related to expectation or cognitive selection. Using a manipulation of speech rate, we dissociated auditory entrainment at different time scales. Specifically, our

  14. Impact of entrainment and impingement on fish populations in the Hudson River estuary. Volume I. Entrainment-impact estimates for six fish populations inhabiting the Hudson River estuary

    SciTech Connect

    Boreman, J.; Barnthouse, L.W.; Vaughn, D.S.; Goodyear, C.P.; Christensen, S.W.; Kumar, K.D.; Kirk, B.L.; Van Winkle, W.

    1982-01-01

    This volume is concerned with the estimation of the direct (or annual) entrainment impact of power plants on populations of striped bass, white perch, Alosa spp. (blueback herring and alewife), American shad, Atlantic tomcod, and bay anchovy in the Hudson River estuary. Entrainment impact results from the killing of fish eggs, larvae, and young juveniles that are contained in the cooling water cycled through a power plant. An Empirical Transport Model (ETM) is presented as the means of estimating a conditional entrainment mortality rate (defined as the fraction of a year class which would be killed due to entrainment in the absence of any other source of mortality). Most of this volume is concerned with the estimation of several parameters required by the ETM: physical input parameters (e.g., power-plant withdrawal flow rates); the longitudinal distribution of ichthyoplankton in time and space; the duration of susceptibility of the vulnerable organisms; the W-factors, which express the ratios of densities of organisms in power plant intakes to densities of organisms in the river; and the entrainment mortality factors (f-factors), which express the probability that an organism will be killed if it is entrained. Once these values are obtained, the ETM is used to estimate entrainment impact for both historical and projected conditions.

  15. Acute management of vascular air embolism

    PubMed Central

    Shaikh, Nissar; Ummunisa, Firdous

    2009-01-01

    Vascular air embolism (VAE) is known since early nineteenth century. It is the entrainment of air or gas from operative field or other communications into the venous or arterial vasculature. Exact incidence of VAE is difficult to estimate. High risk surgeries for VAE are sitting position and posterior fossa neurosurgeries, cesarean section, laparoscopic, orthopedic, surgeries invasive procedures, pulmonary overpressure syndrome, and decompression syndrome. Risk factors for VAE are operative site 5 cm above the heart, creation of pressure gradient which will facilitate entry of air into the circulation, orogenital sex during pregnancy, rapid ascent in scuba (self contained underwater breathing apparatus) divers and barotrauma or chest trauma. Large bolus of air can lead to right ventricular air lock and immediate fatality. In up to 35% patient, the foramen ovale is patent which can cause paradoxical arterial air embolism. VAE affects cardiovascular, pulmonary and central nervous system. High index of clinical suspicion is must to diagnose VAE. The transesophgeal echocardiography is the most sensitive device which will detect smallest amount of air in the circulation. Treatment of VAE is to prevent further entrainment of air, reduce the volume of air entrained and haemodynamic support. Mortality of VAE ranges from 48 to 80%. VAE can be prevented significantly by proper positioning during surgery, optimal hydration, avoiding use of nitrous oxide, meticulous care during insertion, removal of central venous catheter, proper guidance, and training of scuba divers. PMID:20009308

  16. Method of making an air electrode material having controlled sinterability

    DOEpatents

    Vasilow, Theodore R.; Kuo, Lewis J. H.; Ruka, Roswell J.

    1994-01-01

    A tubular, porous ceramic electrode structure (3) is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte (4), substantially surrounds the air electrode, and a porous outer fuel electrode (7) substantially surrounds the electrolyte, to form a fuel cell (1).

  17. Sensory Entrainment Mechanisms in Auditory Perception: Neural Synchronization Cortico-Striatal Activation.

    PubMed

    Sameiro-Barbosa, Catia M; Geiser, Eveline

    2016-01-01

    The auditory system displays modulations in sensitivity that can align with the temporal structure of the acoustic environment. This sensory entrainment can facilitate sensory perception and is particularly relevant for audition. Systems neuroscience is slowly uncovering the neural mechanisms underlying the behaviorally observed sensory entrainment effects in the human sensory system. The present article summarizes the prominent behavioral effects of sensory entrainment and reviews our current understanding of the neural basis of sensory entrainment, such as synchronized neural oscillations, and potentially, neural activation in the cortico-striatal system. PMID:27559306

  18. Identified proprioceptive afferents and motor rhythm entrainment in the crayfish walking system.

    PubMed

    Elson, R C; Sillar, K T; Bush, B M

    1992-03-01

    1. In crayfish, Pacifastacus leniusculus, remotion of a walking leg stretches the thoraco-coxal (TC) muscle receptor organ (TCMRO), located at the leg's articulation with the thorax. In vitro, alternate stretch and release of the fourth leg's TCMRO entrained the centrally generated rhythmic motor output to that leg, with the remotor phase of the rhythm entraining to TCMRO stretch, the promoter phase to release. This coordination of motor bursts to afferent input corresponds to that of active, rhythmic movements in vivo. 2. Entrainment was rapid in onset (stable coordination resulting within the first or second stimulus cycle) and was relatively phase-constant (whatever the stimulus frequency, during 1:1 entrainment, remotor bursts began near the onset of stretch and promotor bursts began near the onset of release). Outside the range of 1:1 entrainment, 2:1, 1:2, and 1:3 coordination ratios (rhythm:stimulus) were encountered. Resetting by phasic stimulation of the TCMRO was complete and probabilistic: effective stimuli triggered rapid transitions between the two burst phases. 3. The TCMRO is innervated by two afferents, the nonspiking S and T fibers, which generate graded depolarizing receptor potentials in response to stretch. During proprioceptive entrainment, the more phasic T fiber depolarized and hyperpolarized more rapidly or in advance of the more tonic S fiber. These receptor potentials were modified differently in the two afferents by interaction with central synaptic inputs that were phase-locked to the entrained motor rhythm. 4. Injecting slow sinusoidal current into either afferent alone could entrain motor rhythms: promoter phase bursts were entrained to depolarization of the S fiber or hyperpolarization of the T fiber, whereas the converse response was obtained for remotor phase bursts. 5. During proprioceptive entrainment, tonic hyperpolarization of the S fiber weakened entrained promotor bursts and allowed remotor burst durations to increase

  19. Universal behavior of entrainment due to coherent structures in turbulent shear flow.

    PubMed

    Govindarajan, Rama

    2002-04-01

    A solution is suggested for a persistent mystery in the physics of turbulent flows: cumulus clouds rise to towering heights, practically without entraining the ambient medium, while apparently similar turbulent jets quickly lose their identity through entrainment and mixing. Dynamical system computations on a model vortical flow show that entrainment due to coherent structures depends sensitively on relative speeds of fluid parcels. Local heating, for example, can alter drastically the sizes of Kolmogorov-Arnol'd-Moser tori and chaotic mixing regions. The entrainment rate and, hence, the lifetime of a turbulent shear flow show a universal, nonmonotone dependence on the heating.

  20. Sensory Entrainment Mechanisms in Auditory Perception: Neural Synchronization Cortico-Striatal Activation

    PubMed Central

    Sameiro-Barbosa, Catia M.; Geiser, Eveline

    2016-01-01

    The auditory system displays modulations in sensitivity that can align with the temporal structure of the acoustic environment. This sensory entrainment can facilitate sensory perception and is particularly relevant for audition. Systems neuroscience is slowly uncovering the neural mechanisms underlying the behaviorally observed sensory entrainment effects in the human sensory system. The present article summarizes the prominent behavioral effects of sensory entrainment and reviews our current understanding of the neural basis of sensory entrainment, such as synchronized neural oscillations, and potentially, neural activation in the cortico-striatal system. PMID:27559306

  1. Examination of turbulent entrainment-mixing mechanisms using a combined approach

    SciTech Connect

    Lu, C.; Liu, Y.; Niu, S.

    2011-10-01

    Turbulent entrainment-mixing mechanisms are investigated by applying a combined approach to the aircraft measurements of three drizzling and two nondrizzling stratocumulus clouds collected over the U.S. Department of Energy's Atmospheric Radiation Measurement Southern Great Plains site during the March 2000 cloud Intensive Observation Period. Microphysical analysis shows that the inhomogeneous entrainment-mixing process occurs much more frequently than the homogeneous counterpart, and most cases of the inhomogeneous entrainment-mixing process are close to the extreme scenario, having drastically varying cloud droplet concentration but roughly constant volume-mean radius. It is also found that the inhomogeneous entrainment-mixing process can occur both near the cloud top and in the middle level of a cloud, and in both the nondrizzling clouds and nondrizzling legs in the drizzling clouds. A new dimensionless number, the scale number, is introduced as a dynamical measure for different entrainment-mixing processes, with a larger scale number corresponding to a higher degree of homogeneous entrainment mixing. Further empirical analysis shows that the scale number that separates the homogeneous from the inhomogeneous entrainment-mixing process is around 50, and most legs have smaller scale numbers. Thermodynamic analysis shows that sampling average of filament structures finer than the instrumental spatial resolution also contributes to the dominance of inhomogeneous entrainment-mixing mechanism. The combined microphysical-dynamical-thermodynamic analysis sheds new light on developing parameterization of entrainment-mixing processes and their microphysical and radiative effects in large-scale models.

  2. Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome.

    PubMed

    Goldberg, Amy; Rosenberg, Noah A

    2015-09-01

    Sex-biased demography, in which parameters governing migration and population size differ between females and males, has been studied through comparisons of X chromosomes, which are inherited sex-specifically, and autosomes, which are not. A common form of sex bias in humans is sex-biased admixture, in which at least one of the source populations differs in its proportions of females and males contributing to an admixed population. Studies of sex-biased admixture often examine the mean ancestry for markers on the X chromosome in relation to the autosomes. A simple framework noting that in a population with equally many females and males, two-thirds of X chromosomes appear in females, suggests that the mean X-chromosomal admixture fraction is a linear combination of female and male admixture parameters, with coefficients 2/3 and 1/3, respectively. Extending a mechanistic admixture model to accommodate the X chromosome, we demonstrate that this prediction is not generally true in admixture models, although it holds in the limit for an admixture process occurring as a single event. For a model with constant ongoing admixture, we determine the mean X-chromosomal admixture, comparing admixture on female and male X chromosomes to corresponding autosomal values. Surprisingly, in reanalyzing African-American genetic data to estimate sex-specific contributions from African and European sources, we find that the range of contributions compatible with the excess African ancestry on the X chromosome compared to autosomes has a wide spread, permitting scenarios either without male-biased contributions from Europe or without female-biased contributions from Africa.

  3. Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome

    PubMed Central

    Goldberg, Amy; Rosenberg, Noah A.

    2015-01-01

    Sex-biased demography, in which parameters governing migration and population size differ between females and males, has been studied through comparisons of X chromosomes, which are inherited sex-specifically, and autosomes, which are not. A common form of sex bias in humans is sex-biased admixture, in which at least one of the source populations differs in its proportions of females and males contributing to an admixed population. Studies of sex-biased admixture often examine the mean ancestry for markers on the X chromosome in relation to the autosomes. A simple framework noting that in a population with equally many females and males, two-thirds of X chromosomes appear in females, suggests that the mean X-chromosomal admixture fraction is a linear combination of female and male admixture parameters, with coefficients 2/3 and 1/3, respectively. Extending a mechanistic admixture model to accommodate the X chromosome, we demonstrate that this prediction is not generally true in admixture models, although it holds in the limit for an admixture process occurring as a single event. For a model with constant ongoing admixture, we determine the mean X-chromosomal admixture, comparing admixture on female and male X chromosomes to corresponding autosomal values. Surprisingly, in reanalyzing African-American genetic data to estimate sex-specific contributions from African and European sources, we find that the range of contributions compatible with the excess African ancestry on the X chromosome compared to autosomes has a wide spread, permitting scenarios either without male-biased contributions from Europe or without female-biased contributions from Africa. PMID:26209245

  4. Establishing Communication between Neuronal Populations through Competitive Entrainment.

    PubMed

    Wildie, Mark; Shanahan, Murray

    2011-01-01

    The role of gamma frequency oscillation in neuronal interaction, and the relationship between oscillation and information transfer between neurons, has been the focus of much recent research. While the biological mechanisms responsible for gamma oscillation and the properties of resulting networks are well studied, the dynamics of changing phase coherence between oscillating neuronal populations are not well understood. To this end we develop a computational model of competitive selection between multiple stimuli, where the selection and transfer of population-encoded information arises from competition between converging stimuli to entrain a target population of neurons. Oscillation is generated by Pyramidal-Interneuronal Network Gamma through the action of recurrent synaptic connections between a locally connected network of excitatory and inhibitory neurons. Competition between stimuli is driven by differences in coherence of oscillation, while transmission of a single selected stimulus is enabled between generating and receiving neurons via Communication-through-Coherence. We explore the effect of varying synaptic parameters on the competitive transmission of stimuli over different neuron models, and identify a continuous region within the parameter space of the recurrent synaptic loop where inhibition-induced oscillation results in entrainment of target neurons. Within this optimal region we find that competition between stimuli of equal coherence results in model output that alternates between representation of the stimuli, in a manner strongly resembling well-known biological phenomena resulting from competitive stimulus selection such as binocular rivalry. PMID:22275892

  5. PKCγ participates in food entrainment by regulating BMAL1.

    PubMed

    Zhang, Luoying; Abraham, Diya; Lin, Shu-Ting; Oster, Henrik; Eichele, Gregor; Fu, Ying-Hui; Ptáček, Louis J

    2012-12-11

    Temporally restricted feeding (RF) can phase reset the circadian clocks in numerous tissues in mammals, contributing to altered timing of behavioral and physiological rhythms. However, little is known regarding the underlying molecular mechanism. Here we demonstrate a role for the gamma isotype of protein kinase C (PKCγ) in food-mediated entrainment of behavior and the molecular clock. We found that daytime RF reduced late-night activity in wild-type mice but not mice homozygous for a null mutation of PKCγ (PKCγ(-/-)). Molecular analysis revealed that PKCγ exhibited RF-induced changes in activation patterns in the cerebral cortex and that RF failed to substantially phase shift the oscillation of clock gene transcripts in the absence of PKCγ. PKCγ exerts effects on the clock, at least in part, by stabilizing the core clock component brain and muscle aryl hydrocarbon receptor nuclear translocator like 1 (BMAL1) and reducing its ubiquitylation in a deubiquitination-dependent manner. Taken together, these results suggest that PKCγ plays a role in food entrainment by regulating BMAL1 stability.

  6. Axially symmetric equations for differential pulsar rotation with superfluid entrainment

    NASA Astrophysics Data System (ADS)

    Antonelli, M.; Pizzochero, P. M.

    2016-09-01

    In this article we present an analytical two-component model for pulsar rotational dynamics. Under the assumption of axial symmetry, implemented by a paraxial array of straight vortices that thread the entire neutron superfluid, we are able to project exactly the 3D hydrodynamical problem to a 1D cylindrical one. In the presence of density-dependent entrainment the superfluid rotation is non-columnar: we circumvent this by using an auxiliary dynamical variable directly related to the areal density of vortices. The main result is a system of differential equations that take consistently into account the stratified spherical structure of the star, the dynamical effects of non-uniform entrainment, the differential rotation of the superfluid component and its coupling to the normal crust. These equations represent a mathematical framework in which to test quantitatively the macroscopic consequences of the presence of a stable vortex array, a working hypothesis widely used in glitch models. Even without solving the equations explicitly, we are able to draw some general quantitative conclusions; in particular, we show that the reservoir of angular momentum (corresponding to recent values of the pinning forces), is enough to reproduce the largest glitch observed in the Vela pulsar, provided its mass is not too large.

  7. Altered streamflow and sediment entrainment in the Gunnison Gorge

    USGS Publications Warehouse

    Elliott, J.G.; Parker, R.S.

    1997-01-01

    The Gunnison River in the Gunnison Gorge is a canyon river where upstream dams regulate mainstem discharge but do not affect debris-flow sediment supply from tributaries entering below the reservoirs. Regulation since 1966 has altered flood frequency, streambed mobility, and fluvial geomorphology creating potential resource-management issues. The duration of moderate streamflows between 32.3 and 85.0 m3/s has increased threefold since 1966. This, along with flood-peak attenuation, has facilitated fine-sediment deposition and vegetation encroachment on stream banks. The Shields equation and on-site channel geometry and bed-material measurements were used to assess changes in sediment entrainment in four alluvial reaches. Sand and fine gravel are transported through riffle/pool reaches at most discharges, but the cobbles and boulders composing the streambed in many reaches now are infrequently entrained. Periodic debris flows add coarse sediment to rapids and can increase pool elevation and the streambed area affected by backwater and fine-sediment accumulation. Debris-flow supplied boulders accumulate on fans and in rapids and constrict the channel until reworked by larger floods. The response to streamflow-regime changes in the Gunnison Gorge could serve as an analog for alluvial reaches in other regulated canyon rivers.

  8. Newborn primate infants are entrained by low intensity lighting

    PubMed Central

    Rivkees, Scott A.; Hofman, Paul L.; Fortman, Jeffrey

    1997-01-01

    At the present time we do not know when the circadian timing system of human infants becomes responsive to light. Because of human study limitations, it is not currently possible to address this issue in clinical studies. Therefore, to provide insights into when the circadian system of humans becomes responsive to light, baboons were studied. We first assessed if the biological clock located in suprachiasmatic nuclei (SCN) is responsive to light at birth. When term newborn infants were exposed to bright light at night (5000 lux), SCN metabolic activity and c-fos mRNA expression increased, indicating the presence of photic responsiveness. When photic entrainment of developing rhythmicity was examined in infants, low intensity (200 lux) cycled lighting was sufficient to entrain circadian phase. However, low intensity lighting was not sufficient to induce changes in SCN metabolic activity or c-fos mRNA expression. Phase–response studies indicated that light exposure (200 lux) before the onset of activity most effectively shifted circadian phase. These data provide direct evidence that the SCN are responsive to visually mediated light information in a primate at birth. Further consideration of lighting conditions that infants are exposed to is therefore warranted. PMID:8990202

  9. Admixture of propofol and alfentanil. Use for intravenous sedation and analgesia during transvaginal oocyte retrieval.

    PubMed

    Sherry, E

    1992-06-01

    An admixture of propofol and alfentanil provides adequate sedation and analgesia during transvaginal oocyte retrieval in the absence of a paracervical block. In 100 patients the technique provided haemodynamic stability, sedation which was easily controlled, rapid recovery and universal patient acceptance.

  10. Efficient moment-based inference of admixture parameters and sources of gene flow.

    PubMed

    Lipson, Mark; Loh, Po-Ru; Levin, Alex; Reich, David; Patterson, Nick; Berger, Bonnie

    2013-08-01

    The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still a challenge, however, to infer reliable parameter values for complicated models involving many populations. Here, we present MixMapper, an efficient, interactive method for constructing phylogenetic trees including admixture events using single nucleotide polymorphism (SNP) genotype data. MixMapper implements a novel two-phase approach to admixture inference using moment statistics, first building an unadmixed scaffold tree and then adding admixed populations by solving systems of equations that express allele frequency divergences in terms of mixture parameters. Importantly, all features of the model, including topology, sources of gene flow, branch lengths, and mixture proportions, are optimized automatically from the data and include estimates of statistical uncertainty. MixMapper also uses a new method to express branch lengths in easily interpretable drift units. We apply MixMapper to recently published data for Human Genome Diversity Cell Line Panel individuals genotyped on a SNP array designed especially for use in population genetics studies, obtaining confident results for 30 populations, 20 of them admixed. Notably, we confirm a signal of ancient admixture in European populations-including previously undetected admixture in Sardinians and Basques-involving a proportion of 20-40% ancient northern Eurasian ancestry. PMID:23709261

  11. EFFECT OF STORAGE TEMPERATURE ON THE STABILITY OF TOTAL PARENTERAL NUTRITION ADMIXTURES PREPARED FOR INFANTS.

    PubMed

    Turmezei, Judit; Jávorszky, Eszter; Szabó, Eszter; Dredán, Judit; Kállai-Szabó, Barnabás; Zelkó, Romána

    2015-01-01

    Physical, chemical and microbiological stability of total parenteral nutrient (TPN) admixtures was studied as a function of storage time and temperature. Particle size analysis and zeta potential measurements were carried out to evaluate the possible changes in the kinetic stability of the emulsions as a function of storage time and temperature. The concentration changes of the applied additives, those of the ascorbic acid and L-alanyl-L-glutamine, were also determined under different storage conditions. Our results indicate that there were no significant differences in the particle size and zeta potential values of admixtures stored at the three examined temperatures. The best results were obtained in the case of admixtures stored at 30°C temperature. Rapid decomposition of vitamin C was found while the glutamine showed adequate stability as a function of storage time and temperature. According to the results of the physicochemical examinations 10-day storage period of this type of TPN admixtures can be accepted at room temperature. Their storage does not require refrigeration (2-8°C) thus they can be administered without special preheating ensuring better physiological tolerance. Ascorbic acid can be added to the system preceding the administration to the patient because of its rapid decomposition.

  12. Recycling of tailings from Korea Molybdenum Corporation as admixture for high-fluidity concrete.

    PubMed

    Jung, Moon Young; Choi, Yun Wang; Jeong, Jae Gwon

    2011-01-01

    The main objective of this study is to develop an eco-friendly and a large recycling technique of flotation Tailings from korea (TK) from metal mines as construction materials such as admixtures for high-fluidity concrete (HFC). TK used in this study was obtained from the Korea Molybdenum Corporation in operation. TK was used as the alternative material to adjust flowability and viscosity of HFC in the form of powder agent which enables adjustment of concrete compressive strength. In this study, we have performed concrete rheological tests and concrete flowability tests to obtain the quality characteristics of TK for using as the admixture in producing HFC. The results indicated that the adequate mix ratio of cement to TK should be 8:2 (vol%). It is more effective to use the TK as admixture to control flowability, viscosity and strength of HFC than the normal concrete. It was found that TK could be recycled construction materials in bulk such as admixture for HFC, in terms of the economic and eco-friendly aspects. PMID:21113645

  13. Admixture mapping identifies a quantitative trait locus associated with FEV1/FVC in the COPDGene Study.

    PubMed

    Parker, Margaret M; Foreman, Marilyn G; Abel, Haley J; Mathias, Rasika A; Hetmanski, Jacqueline B; Crapo, James D; Silverman, Edwin K; Beaty, Terri H

    2014-11-01

    African Americans are admixed with genetic contributions from European and African ancestral populations. Admixture mapping leverages this information to map genes influencing differential disease risk across populations. We performed admixture and association mapping in 3,300 African American current or former smokers from the COPDGene Study. We analyzed estimated local ancestry and SNP genotype information to identify regions associated with FEV1 /FVC, the ratio of forced expiratory volume in one second to forced vital capacity, measured by spirometry performed after bronchodilator administration. Global African ancestry inversely associated with FEV1 /FVC (P = 0.035). Genome-wide admixture analysis, controlling for age, gender, body mass index, current smoking status, pack-years smoked, and four principal components summarizing the genetic background of African Americans in the COPDGene Study, identified a region on chromosome 12q14.1 associated with FEV1 /FVC (P = 2.1 × 10(-6) ) when regressed on local ancestry. Allelic association in this region of chromosome 12 identified an intronic variant in FAM19A2 (rs348644) as associated with FEV1 /FVC (P = 1.76 × 10(-6) ). By combining admixture and association mapping, a marker on chromosome 12q14.1 was identified as being associated with reduced FEV1 /FVC ratio among African Americans in the COPDGene Study.

  14. Phenomenological model of sintering of oxide nuclear fuel with doping admixtures

    SciTech Connect

    Baranov, V. G.; Devyatko, Yu. N.; Tenishev, A. V.; Khomyakov, O. V.

    2015-12-15

    It is shown that a change in the linear dimension of compacted UO{sub 2} in the sintering process is associated with its plastic yielding under the action of the forces of residual stress and capillary forces. From the curves of sintering of a fuel with doping admixtures in various gaseous media, its rate of creep is reduced.

  15. Efficient moment-based inference of admixture parameters and sources of gene flow.

    PubMed

    Lipson, Mark; Loh, Po-Ru; Levin, Alex; Reich, David; Patterson, Nick; Berger, Bonnie

    2013-08-01

    The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still a challenge, however, to infer reliable parameter values for complicated models involving many populations. Here, we present MixMapper, an efficient, interactive method for constructing phylogenetic trees including admixture events using single nucleotide polymorphism (SNP) genotype data. MixMapper implements a novel two-phase approach to admixture inference using moment statistics, first building an unadmixed scaffold tree and then adding admixed populations by solving systems of equations that express allele frequency divergences in terms of mixture parameters. Importantly, all features of the model, including topology, sources of gene flow, branch lengths, and mixture proportions, are optimized automatically from the data and include estimates of statistical uncertainty. MixMapper also uses a new method to express branch lengths in easily interpretable drift units. We apply MixMapper to recently published data for Human Genome Diversity Cell Line Panel individuals genotyped on a SNP array designed especially for use in population genetics studies, obtaining confident results for 30 populations, 20 of them admixed. Notably, we confirm a signal of ancient admixture in European populations-including previously undetected admixture in Sardinians and Basques-involving a proportion of 20-40% ancient northern Eurasian ancestry.

  16. The scale and nature of Viking settlement in Ireland from Y-chromosome admixture analysis.

    PubMed

    McEvoy, Brian; Brady, Claire; Moore, Laoise T; Bradley, Daniel G

    2006-12-01

    The Vikings (or Norse) played a prominent role in Irish history but, despite this, their genetic legacy in Ireland, which may provide insights into the nature and scale of their immigration, is largely unexplored. Irish surnames, some of which are thought to have Norse roots, are paternally inherited in a similar manner to Y-chromosomes. The correspondence of Scandinavian patrilineal ancestry in a cohort of Irish men bearing surnames of putative Norse origin was examined using both slow mutating unique event polymorphisms and relatively rapidly changing short tandem repeat Y-chromosome markers. Irish and Scandinavian admixture proportions were explored for both systems using six different admixture estimators, allowing a parallel investigation of the impact of method and marker type in Y-chromosome admixture analysis. Admixture proportion estimates in the putative Norse surname group were highly consistent and detected little trace of Scandinavian ancestry. In addition, there is scant evidence of Scandinavian Y-chromosome introgression in a general Irish population sample. Although conclusions are largely dependent on the accurate identification of Norse surnames, the findings are consistent with a relatively small number of Norse settlers (and descendents) migrating to Ireland during the Viking period (ca. AD 800-1200) suggesting that Norse colonial settlements might have been largely composed of indigenous Irish. This observation adds to previous genetic studies that point to a flexible Viking settlement approach across North Atlantic Europe.

  17. Admixture of propofol and alfentanil. Use for intravenous sedation and analgesia during transvaginal oocyte retrieval.

    PubMed

    Sherry, E

    1992-06-01

    An admixture of propofol and alfentanil provides adequate sedation and analgesia during transvaginal oocyte retrieval in the absence of a paracervical block. In 100 patients the technique provided haemodynamic stability, sedation which was easily controlled, rapid recovery and universal patient acceptance. PMID:1616081

  18. Further characterization of theobroma oil-beeswax admixtures as lipid matrices for improved drug delivery systems.

    PubMed

    Attama, A A; Schicke, B C; Müller-Goymann, C C

    2006-11-01

    There is an increasing interest in lipid based drug delivery systems due to factors such as better characterization of lipidic excipients and formulation versatility and the choice of different drug delivery systems. It is important to know the thermal characteristics, crystal habit, texture, and appearance of a new lipid matrix when determining its suitability for use in certain pharmaceutical application. It is line with this that this research was embarked upon to characterize mixtures of beeswax and theobroma oil with a view to applying their admixtures in drug delivery systems such as solid lipid nanoparticles and nanostructured lipid carriers. Admixtures of theobroma oil and beeswax were prepared to contain 25% w/w, 50% w/w, and 75% w/w of theobroma oil. The admixtures were analyzed by differential scanning calorimetry (DSC), small angle X-ray diffraction (SAXD), wide angle X-ray diffraction (WAXD), and isothermal heat conduction microcalorimetry (IMC). The melting behavior and microstructures of the lipid admixtures were monitored by polarized light microscopy (PLM). Transmission electron microscopy (TEM) was used to study the internal structures of the lipid bases. DSC traces indicated that the higher melting peaks were roughly constant for the different admixtures, but lower melting peaks significantly increased (p < 0.05). The admixture containing 25% w/w of theobroma oil possessed highest crystallinity index of 95.6%. WAXD studies indicated different reflections for the different lipid matrices. However, new interferences were detected for all the lipid matrix admixtures between 2theta = 22.0 degrees and 2theta = 25.0 degrees. The lipid matrices containing 50% w/w and 25% w/w of theobroma oil showed absence of the weak reflection characteristic of pure theobroma oil, while there was disappearance of the strong intensity reflection of beeswax in all the lipid matrix admixtures at all stages of the study. PLM micrographs revealed differences with regard to

  19. The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape.

    PubMed

    Busby, George B J; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J; Wilson, James F; Myers, Simon; Capelli, Cristian

    2015-10-01

    Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1-7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8-11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia.

  20. Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World

    PubMed Central

    2012-01-01

    Background Populations of the Americas were founded by early migrants from Asia, and some have experienced recent genetic admixture. To better characterize the native and non-native ancestry components in populations from the Americas, we analyzed 815,377 autosomal SNPs, mitochondrial hypervariable segments I and II, and 36 Y-chromosome STRs from 24 Mesoamerican Totonacs and 23 South American Bolivians. Results and Conclusions We analyzed common genomic regions from native Bolivian and Totonac populations to identify 324 highly predictive Native American ancestry informative markers (AIMs). As few as 40–50 of these AIMs perform nearly as well as large panels of random genome-wide SNPs for predicting and estimating Native American ancestry and admixture levels. These AIMs have greater New World vs. Old World specificity than previous AIMs sets. We identify highly-divergent New World SNPs that coincide with high-frequency haplotypes found at similar frequencies in all populations examined, including the HGDP Pima, Maya, Colombian, Karitiana, and Surui American populations. Some of these regions are potential candidates for positive selection. European admixture in the Bolivian sample is approximately 12%, though individual estimates range from 0–48%. We estimate that the admixture occurred ~360–384 years ago. Little evidence of European or African admixture was found in Totonac individuals. Bolivians with pre-Columbian mtDNA and Y-chromosome haplogroups had 5–30% autosomal European ancestry, demonstrating the limitations of Y-chromosome and mtDNA haplogroups and the need for autosomal ancestry informative markers for assessing ancestry in admixed populations. PMID:22606979

  1. Phenotypic evolution of human craniofacial morphology after admixture: a geometric morphometrics approach.

    PubMed

    Martínez-Abadías, Neus; González-José, Rolando; González-Martín, Antonio; Van der Molen, Silvina; Talavera, Arturo; Hernández, Patricia; Hernández, Miquel

    2006-03-01

    An evolutionary, diachronic approach to the phenotypic craniofacial pattern arisen in a human population after high levels of admixture and gene flow was achieved by means of geometric morphometrics. Admixture has long been studied after molecular data. Nevertheless, few efforts have been made to explain the morphological outcome in human craniofacial samples. The Spanish-Amerindian contact can be considered a good scenario for such an analysis. Here we present a comparative analysis of craniofacial shape changes observed between two putative ancestor groups, Spanish and precontact Aztecs, and two diachronic admixed groups, corresponding to early and late colonial periods from the Mexico's Central Valley. Quantitative shape comparisons of Amerindian, Spanish, and admixed groups were used to test the expectations of quantitative genetics for admixture events. In its simplest form, this prediction states that an admixed group will present phenotypic values falling between those of both parental groups. Results show that, in general terms, although the human skull is a complex, integrated structure, the craniofacial morphology observed fits the theoretical expectations of quantitative genetics. Thus, it is predictive of population structure and history. In fact, results obtained after the craniofacial analysis are in accordance with previous molecular and historical interpretations, providing evidence that admixture is a main microevolutionary agent influencing modern Mexican gene pool. However, expectations are not straightforward when moderate shape changes are considered. Deviations detected at localized structures, such as the upper and lower face, highlight the evolution of a craniofacial pattern exclusively inherent to the admixed groups, indicating that quantitative characters might respond to admixture in a complicated, nondirectional way. PMID:16323202

  2. The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape

    PubMed Central

    Busby, George B.J.; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J.; Wilson, James F.; Myers, Simon; Capelli, Cristian

    2015-01-01

    Summary Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1, 2, 3, 4, 5, 6, 7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8, 9, 10, 11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia. PMID:26387712

  3. African Ancestry Analysis and Admixture Genetic Mapping for Proliferative Diabetic Retinopathy in African Americans

    PubMed Central

    Tandon, Arti; Chen, Ching J.; Penman, Alan; Hancock, Heather; James, Maurice; Husain, Deeba; Andreoli, Christopher; Li, Xiaohui; Kuo, Jane Z.; Idowu, Omolola; Riche, Daniel; Papavasilieou, Evangelia; Brauner, Stacey; Smith, Sataria O.; Hoadley, Suzanne; Richardson, Cole; Kieser, Troy; Vazquez, Vanessa; Chi, Cheryl; Fernandez, Marlene; Harden, Maegan; Cotch, Mary Frances; Siscovick, David; Taylor, Herman A.; Wilson, James G.; Reich, David; Wong, Tien Y.; Klein, Ronald; Klein, Barbara E. K.; Rotter, Jerome I.; Patterson, Nick; Sobrin, Lucia

    2015-01-01

    Purpose. To examine the relationship between proportion of African ancestry (PAA) and proliferative diabetic retinopathy (PDR) and to identify genetic loci associated with PDR using admixture mapping in African Americans with type 2 diabetes (T2D). Methods. Between 1993 and 2013, 1440 participants enrolled in four different studies had fundus photographs graded using the Early Treatment Diabetic Retinopathy Study scale. Cases (n = 305) had PDR while controls (n = 1135) had nonproliferative diabetic retinopathy (DR) or no DR. Covariates included diabetes duration, hemoglobin A1C, systolic blood pressure, income, and education. Genotyping was performed on the Affymetrix platform. The association between PAA and PDR was evaluated using logistic regression. Genome-wide admixture scanning was performed using ANCESTRYMAP software. Results. In the univariate analysis, PDR was associated with increased PAA (odds ratio [OR] = 1.36, 95% confidence interval [CI] = 1.16–1.59, P = 0.0002). In multivariate regression adjusting for traditional DR risk factors, income and education, the association between PAA and PDR was attenuated and no longer significant (OR = 1.21, 95% CI = 0.59–2.47, P = 0.61). For the admixture analyses, the maximum genome-wide score was 1.44 on chromosome 1. Conclusions. In this largest study of PDR in African Americans with T2D to date, an association between PAA and PDR is not present after adjustment for clinical, demographic, and socioeconomic factors. No genome-wide significant locus (defined as having a locus-genome statistic > 5) was identified with admixture analysis. Further analyses with even larger sample sizes are needed to definitively assess if any admixture signal for DR is present. PMID:26098467

  4. Photic Resetting and Entrainment in CLOCK-Deficient Mice

    PubMed Central

    Dallmann, Robert; DeBruyne, Jason P.; Weaver, David R.

    2012-01-01

    Mice lacking CLOCK protein have a relatively subtle circadian phenotype, including a slightly shorter period in constant darkness, differences in phase resetting after 4-hr light pulses in the early and late night, and a variably advanced phase angle of entrainment in a light-dark (LD) cycle (DeBruyne et al., Neuron 50:465–477, 2006). The present series of experiments was conducted to more fully characterize the circadian phenotype of Clock−/− mice under various lighting conditions. A phase-response curve (PRC) to 4-hour light pulses in free-running mice was conducted; the results confirm that Clock−/− mice exhibit very large phase advances after 4 hrs light pulses in the late subjective night, but have relatively normal responses to light at other phases. The abnormal shape of the PRC to light may explain the tendency of CLOCK-deficient mice to begin activity before lights-out when housed in a 12 hrs light: 12 hrs dark lighting schedule. To assess this relationship further, Clock−/− and wild-type control mice were entrained to skeleton lighting cycles (1L:23D, and 1L:10D:1L:12D). Comparing entrainment under the two types of skeleton photoperiods revealed that exposure to 1 hr light in the morning leads to a phase advance of activity onset (expressed the following afternoon) in Clock−/− mice, but not in the controls. Constant light typically causes an intensity-dependent increase in circadian period in mice, but this did not occur in CLOCK-deficient mice. The failure of Clock−/− mice to respond to the period-lengthening effect of constant light likely results from the increased functional impact of light falling in the phase advance zone of the PRC. Collectively, these experiments reveal that alterations in the response of CLOCK-deficient mice to light in several paradigms are likely due to an imbalance in the shape of the PRC to light. PMID:21921293

  5. Basal entrainment by Newtonian gravity-driven flows

    NASA Astrophysics Data System (ADS)

    Bates, Belinda; Andreini, Nicolas; Ancey, Christophe

    2016-04-01

    Gravity-driven flows can erode the bed along which they descend and increase their mass by a factor of 10 or more. This process is called basal entrainment. Although documented by field observations and laboratory experiments, it remains poorly understood. We look into this issue by studying eroding dam-break waves. More specifically we would like to determine what happens when a viscous gravity-driven flow generated by releasing a fixed volume of incompressible Newtonian fluid encounters a stationary erodible layer (composed of fluid with the same density and viscosity). Models based on depth-averaged mass and momentum balance equations deal with bed-flow interfaces as shock waves. In contrast, we use an approach involving the long-wave approximation of the Navier-Stokes equations (lubrication theory), and in this context, bed-flow interfaces are acceleration waves that move quickly across thin stationary layers. The incoming flow digs down into the bed, pushing up downstream material, thus advancing the flow front. Extending the method used by Huppert [J. Fluid Mech. 121, 43--58 (1982)] for modelling viscous dam-break waves, we end up with a nonlinear diffusion equation for the flow depth, which is solved numerically. Theory is compared with experimental results. Excellent agreement is found in the limit of low Reynolds numbers (i.e., for flow Reynolds numbers lower than 20) for the front position over time and flow depth profile. The Newtonian model has sometimes been used to describe the flow behaviour of natural materials such as snow and debris suspensions, but the majority of existing approaches rely on more elaborate constitutive equations. So there is no direct application of the results presented here to real flow conditions. Yet, our study sheds light on the mechanisms involved in basal entrainment. We provide evidence that the whole layer of loose material is entrained quickly once the flow makes contact with the erodible layer. As this process occurs

  6. Understanding admixture patterns in supplemented populations: a case study combining molecular analyses and temporally explicit simulations in Atlantic salmon

    PubMed Central

    Perrier, Charles; Baglinière, Jean-Luc; Evanno, Guillaume

    2013-01-01

    Genetic admixture between wild and introduced populations is a rising concern for the management of endangered species. Here, we use a dual approach based on molecular analyses of samples collected before and after hatchery fish introduction in combination with a simulation study to obtain insight into the mechanisms of admixture in wild populations. Using 17 microsatellites, we genotyped pre- and post-stocking samples from four Atlantic salmon populations supplemented with non-native fish to estimate genetic admixture. We also used individual-based temporally explicit simulations based on realistic demographic and stocking data to predict the extent of admixture. We found a low admixture by hatchery stocks within prestocking samples but moderate to high values in post-stocking samples (from 12% to 60%). The simulation scenarios best fitting the real data suggested a 10–25 times lower survival of stocked fish relative to wild individuals. Simulations also suggested relatively high dispersal rates of stocked and wild fish, which may explain some high levels of admixture in weakly stocked populations and the persistence of indigenous genotypes in heavily stocked populations. This study overall demonstrates that combining genetic analyses with simulations can significantly improve the understanding of admixture mechanisms in wild populations. PMID:23798972

  7. The relationship between European genetic admixture and body composition among Hispanics and Native Americans.

    PubMed

    Klimentidis, Y C; Miller, G F; Shriver, M D

    2009-01-01

    Previous studies have shown a relationship between health-related phenotypes and the degree of African, European, or Native American genetic admixture, indicating that there may be a genetic component to these phenotypes. However, these relationships may be driven to a large extent by the environmental differences that co-vary with admixture differences between and within groups. In this study, we examine the relationship between genetic admixture and two phenotypic measurements that are potentially related to health: body mass index (BMI) and percent body fat (PBF). In addition to admixture proportions, we attempt to assess the influence of some environmental covariates by examining how the phenotypes vary with self-reported household income, education of parents, and physical activity level. Genetic, anthropometric, and environmental data were collected from 170 self-reported Hispanic and Native American university students in Albuquerque, NM. We examine the relationships between genetic admixture, phenotype, and environment in both the full sample, as well as in Hispanics and Native Americans separately. Among Hispanics, we find no significant relationship between genetic admixture and body composition. Among Native Americans, despite a small sample size, we find a statistically significant, negative relationship between European genetic admixture and PBF and BMI, after adjusting for other predictor variables. We compare our findings to previous research, and discuss their implications for understanding health disparities within and between ethnic groups. PMID:19214998

  8. Comparison of Statistical Methods for Estimating Genetic Admixture in a Lung Cancer Study of African Americans and Latinos

    PubMed Central

    Selvin, Steve; Hansen, Helen M.; Barcellos, Lisa F.; Wrensch, Margaret R.; Sison, Jennette D.; Quesenberry, Charles P.; Kittles, Rick A.; Silva, Gabriel; Buffler, Patricia A.; Seldin, Michael F.; Wiencke, John K.

    2008-01-01

    A variety of methods are available for estimating genetic admixture proportions in populations; however, few investigators have conducted detailed comparisons using empirical data. The authors characterized admixture proportions among self-identified African Americans (n = 535) and Latinos (n = 412) living in the San Francisco Bay Area who participated in a lung cancer case-control study (1998–2003). Individual estimates of genetic ancestry based on 184 informative markers were obtained from a Bayesian approach and 2 maximum likelihood approaches and were compared using descriptive statistics, Pearson correlation coefficients, and Bland-Altman plots. Case-control differences in individual admixture proportions were assessed using 2-sample t tests and logistic regression analysis. Results indicated that Bayesian and frequentist approaches to estimating admixture provide similar estimates and inferences. No difference was observed in admixture proportions between African-American cases and controls, but Latino cases and controls significantly differed according to Amerindian and European genetic ancestry. Differences in admixture proportions between Latino cases and controls were not unexpected, since cases were more likely to have been born in the United States. Genetic admixture proportions provide a quantitative measure of ancestry differences among Latinos that can be used in analyses of genetic risk factors. PMID:18791191

  9. Near-field entrainment in black smoker plumes

    NASA Astrophysics Data System (ADS)

    Smith, J. E.; Germanovich, L. N.; Lowell, R. P.

    2013-12-01

    In this work, we study the entrainment rate of the ambient fluid into a plume in the extreme conditions of hydrothermal venting at ocean floor depths that would be difficult to reproduce in the laboratory. Specifically, we investigate the flow regime in the lower parts of three black smoker plumes in the Main Endeavour Field on the Juan de Fuca Ridge discharging at temperatures of 249°C, 333°C, and 336°C and a pressure of 21 MPa. Such flow conditions are typical for ocean floor hydrothermal venting but would be difficult to reproduce in the laboratory. The centerline temperature was measured at several heights in the plume above the orifice. Using a previously developed turbine flow meter, we also measured the mean flow velocity at the orifice. Measurements were conducted during dives 4452 and 4518 on the submersible Alvin. Using these measurements, we obtained a range of 0.064 - 0.068 for values of the entrainment coefficient α, which is assumed constant near the orifice. This is half the value of α ≈ 0.12 - 0.13 that would be expected for plume flow regimes based on the existing laboratory results and field measurements in lower temperature and pressure conditions. In fact, α = 0.064 - 0.068 is even smaller than the value of α ≈ 0.075 characteristic of jet flow regimes and appears to be the lowest reported in the literature. Assuming that the mean value α = 0.066 is typical for hydrothermal venting at ocean floor depths, we then characterized the flow regimes of 63 black smoker plumes located on the Endeavor Segment of the Juan de Fuca Ridge. Work with the obtained data is ongoing, but current results indicate that approximately half of these black smokers are lazy in the sense that their plumes exhibit momentum deficits compared to the pure plume flow that develops as the plume rises. The remaining half produces forced plumes that show the momentum excess compared to the pure plumes. The lower value of the entrainment coefficient has important

  10. Turbulent mixing and entrainment in a gravity current

    SciTech Connect

    Ecke, Robert E; Odier, Philippe; Chen, Jun

    2010-01-01

    We present an experimental study of the mixing processes in a gravity current. The turbulent transport of momentum and buoyancy can be described in a very direct and compact form by a Prandtl mixing length model: the turbulent vertical fluxes of momentum and buoyancy are found to scale quadratically with the vertical mean gradients of velocity and density. The scaling coefficient is the square of the mixing lenth, approximately constant over the mixing zone of the stratified shear layer. We show how, in different flow configurations, this length can be related to the shear length of the flow ({var_epsilon}/{partial_derivative}{sub z}u{sup 3}){sup 1/2}. We also study the fluctuations of the momentum and density turbulent fluxes, showing how they relate to the mixing phenomena, and to the entrainment/detrainment balance.

  11. Phase-selective entrainment of nonlinear oscillator ensembles

    NASA Astrophysics Data System (ADS)

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z.; Li-Shin, Jr.

    2016-03-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.

  12. Spontaneous tempo and rhythmic entrainment in a bonobo (Pan paniscus).

    PubMed

    Large, Edward W; Gray, Patricia M

    2015-11-01

    The emergence of speech and music in the human species represent major evolutionary transitions that enabled the use of complex, temporally structured acoustic signals to coordinate social interaction. While the fundamental capacity for temporal coordination with complex acoustic signals has been shown in a few distantly related species, the extent to which nonhuman primates exhibit sensitivity to auditory rhythms remains controversial. In Experiment 1, we assessed spontaneous motor tempo and tempo matching in a bonobo (Pan paniscus), in the context of a social drumming interaction. In Experiment 2, the bonobo spontaneously entrained and synchronized her drum strikes within a range around her spontaneous motor tempo. Our results are consistent with the hypothesis that the evolution of acoustic communication builds upon fundamental neurodynamic mechanisms that can be found in a wide range of species, and are recruited for social interactions.

  13. Entrainment of Human Alpha Oscillations Selectively Enhances Visual Conjunction Search.

    PubMed

    Müller, Notger G; Vellage, Anne-Katrin; Heinze, Hans-Jochen; Zaehle, Tino

    2015-01-01

    The functional role of the alpha-rhythm which dominates the human electroencephalogram (EEG) is unclear. It has been related to visual processing, attentional selection and object coherence, respectively. Here we tested the interaction of alpha oscillations of the human brain with visual search tasks that differed in their attentional demands (pre-attentive vs. attentive) and also in the necessity to establish object coherence (conjunction vs. single feature). Between pre- and post-assessment elderly subjects received 20 min/d of repetitive transcranial alternating current stimulation (tACS) over the occipital cortex adjusted to their individual alpha frequency over five consecutive days. Compared to sham the entrained alpha oscillations led to a selective, set size independent improvement in the conjunction search task performance but not in the easy or in the hard feature search task. These findings suggest that cortical alpha oscillations play a specific role in establishing object coherence through suppression of distracting objects. PMID:26606255

  14. Spontaneous tempo and rhythmic entrainment in a bonobo (Pan paniscus).

    PubMed

    Large, Edward W; Gray, Patricia M

    2015-11-01

    The emergence of speech and music in the human species represent major evolutionary transitions that enabled the use of complex, temporally structured acoustic signals to coordinate social interaction. While the fundamental capacity for temporal coordination with complex acoustic signals has been shown in a few distantly related species, the extent to which nonhuman primates exhibit sensitivity to auditory rhythms remains controversial. In Experiment 1, we assessed spontaneous motor tempo and tempo matching in a bonobo (Pan paniscus), in the context of a social drumming interaction. In Experiment 2, the bonobo spontaneously entrained and synchronized her drum strikes within a range around her spontaneous motor tempo. Our results are consistent with the hypothesis that the evolution of acoustic communication builds upon fundamental neurodynamic mechanisms that can be found in a wide range of species, and are recruited for social interactions. PMID:26147705

  15. Phase-selective entrainment of nonlinear oscillator ensembles

    PubMed Central

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z.; Li, Jr-Shin

    2016-01-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information. PMID:26988313

  16. Entrainment of Human Alpha Oscillations Selectively Enhances Visual Conjunction Search

    PubMed Central

    Müller, Notger G.; Vellage, Anne-Katrin; Heinze, Hans-Jochen; Zaehle, Tino

    2015-01-01

    The functional role of the alpha-rhythm which dominates the human electroencephalogram (EEG) is unclear. It has been related to visual processing, attentional selection and object coherence, respectively. Here we tested the interaction of alpha oscillations of the human brain with visual search tasks that differed in their attentional demands (pre-attentive vs. attentive) and also in the necessity to establish object coherence (conjunction vs. single feature). Between pre- and post-assessment elderly subjects received 20 min/d of repetitive transcranial alternating current stimulation (tACS) over the occipital cortex adjusted to their individual alpha frequency over five consecutive days. Compared to sham the entrained alpha oscillations led to a selective, set size independent improvement in the conjunction search task performance but not in the easy or in the hard feature search task. These findings suggest that cortical alpha oscillations play a specific role in establishing object coherence through suppression of distracting objects. PMID:26606255

  17. Low frequency entrainment of oscillatory bursts in hair cells.

    PubMed

    Shlomovitz, Roie; Fredrickson-Hemsing, Lea; Kao, Albert; Meenderink, Sebastiaan W F; Bruinsma, Robijn; Bozovic, Dolores

    2013-04-16

    Sensitivity of mechanical detection by the inner ear is dependent upon a highly nonlinear response to the applied stimulus. Here we show that a system of differential equations that support a subcritical Hopf bifurcation, with a feedback mechanism that tunes an internal control parameter, captures a wide range of experimental results. The proposed model reproduces the regime in which spontaneous hair bundle oscillations are bistable, with sporadic transitions between the oscillatory and the quiescent state. Furthermore, it is shown, both experimentally and theoretically, that the application of a high-amplitude stimulus to the bistable system can temporarily render it quiescent before recovery of the limit cycle oscillations. Finally, we demonstrate that the application of low-amplitude stimuli can entrain bundle motility either by mode-locking to the spontaneous oscillation or by mode-locking the transition between the quiescent and oscillatory states. PMID:23601313

  18. Low Frequency Entrainment of Oscillatory Bursts in Hair Cells

    PubMed Central

    Shlomovitz, Roie; Fredrickson-Hemsing, Lea; Kao, Albert; Meenderink, Sebastiaan W.F.; Bruinsma, Robijn; Bozovic, Dolores

    2013-01-01

    Sensitivity of mechanical detection by the inner ear is dependent upon a highly nonlinear response to the applied stimulus. Here we show that a system of differential equations that support a subcritical Hopf bifurcation, with a feedback mechanism that tunes an internal control parameter, captures a wide range of experimental results. The proposed model reproduces the regime in which spontaneous hair bundle oscillations are bistable, with sporadic transitions between the oscillatory and the quiescent state. Furthermore, it is shown, both experimentally and theoretically, that the application of a high-amplitude stimulus to the bistable system can temporarily render it quiescent before recovery of the limit cycle oscillations. Finally, we demonstrate that the application of low-amplitude stimuli can entrain bundle motility either by mode-locking to the spontaneous oscillation or by mode-locking the transition between the quiescent and oscillatory states. PMID:23601313

  19. Phase-selective entrainment of nonlinear oscillator ensembles.

    PubMed

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z; Li, Jr-Shin

    2016-01-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information. PMID:26988313

  20. Phase-selective entrainment of nonlinear oscillator ensembles

    DOE PAGES

    Zlotnik, Anatoly V.; Nagao, Raphael; Kiss, Istvan Z.; Li, Jr -Shin

    2016-03-18

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups intomore » spatiotemporal patterns with multiple phase clusters. As a result, the experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.« less

  1. Right Heart Vortex Entrainment Volume and Right Ventricular Diastolic Dysfunction

    NASA Astrophysics Data System (ADS)

    Browning, James; Hertzberg, Jean; Fenster, Brett; Schroeder, Joyce

    2014-11-01

    Recent advances in cardiac magnetic resonance imaging (CMR) have allowed for the 3-dimensional characterization of blood flow in the right ventricle (RV) and right atrium (RA). In this study, we investigate and quantify differences in the characteristics of coherent rotating flow structures (vortices) in the RA and RV between subjects with right ventricular diastolic dysfunction (RVDD) and normal controls. Fifteen RVDD subjects and 10 age-matched controls underwent same day 3D time resolved CMR and echocardiography. Echocardiography was used to determine RVDD stage as well as pulmonary artery systolic pressure (PASP). CMR data was used for RA and RV vortex quantification and visualization during early and late ventricular diastole. RA and RV vortex entrainment volume is quantified and visualized using the Lambda-2 criterion, and the results are compared between healthy subjects and those with RVDD. The resulting trends are discussed and hypotheses are presented regarding differences in vortex characteristics between healthy and RVDD subjects cohorts.

  2. The Role of High-Level Processes for Oscillatory Phase Entrainment to Speech Sound.

    PubMed

    Zoefel, Benedikt; VanRullen, Rufin

    2015-01-01

    Constantly bombarded with input, the brain has the need to filter out relevant information while ignoring the irrelevant rest. A powerful tool may be represented by neural oscillations which entrain their high-excitability phase to important input while their low-excitability phase attenuates irrelevant information. Indeed, the alignment between brain oscillations and speech improves intelligibility and helps dissociating speakers during a "cocktail party". Although well-investigated, the contribution of low- and high-level processes to phase entrainment to speech sound has only recently begun to be understood. Here, we review those findings, and concentrate on three main results: (1) Phase entrainment to speech sound is modulated by attention or predictions, likely supported by top-down signals and indicating higher-level processes involved in the brain's adjustment to speech. (2) As phase entrainment to speech can be observed without systematic fluctuations in sound amplitude or spectral content, it does not only reflect a passive steady-state "ringing" of the cochlea, but entails a higher-level process. (3) The role of intelligibility for phase entrainment is debated. Recent results suggest that intelligibility modulates the behavioral consequences of entrainment, rather than directly affecting the strength of entrainment in auditory regions. We conclude that phase entrainment to speech reflects a sophisticated mechanism: several high-level processes interact to optimally align neural oscillations with predicted events of high relevance, even when they are hidden in a continuous stream of background noise. PMID:26696863

  3. The Role of High-Level Processes for Oscillatory Phase Entrainment to Speech Sound

    PubMed Central

    Zoefel, Benedikt; VanRullen, Rufin

    2015-01-01

    Constantly bombarded with input, the brain has the need to filter out relevant information while ignoring the irrelevant rest. A powerful tool may be represented by neural oscillations which entrain their high-excitability phase to important input while their low-excitability phase attenuates irrelevant information. Indeed, the alignment between brain oscillations and speech improves intelligibility and helps dissociating speakers during a “cocktail party”. Although well-investigated, the contribution of low- and high-level processes to phase entrainment to speech sound has only recently begun to be understood. Here, we review those findings, and concentrate on three main results: (1) Phase entrainment to speech sound is modulated by attention or predictions, likely supported by top-down signals and indicating higher-level processes involved in the brain’s adjustment to speech. (2) As phase entrainment to speech can be observed without systematic fluctuations in sound amplitude or spectral content, it does not only reflect a passive steady-state “ringing” of the cochlea, but entails a higher-level process. (3) The role of intelligibility for phase entrainment is debated. Recent results suggest that intelligibility modulates the behavioral consequences of entrainment, rather than directly affecting the strength of entrainment in auditory regions. We conclude that phase entrainment to speech reflects a sophisticated mechanism: several high-level processes interact to optimally align neural oscillations with predicted events of high relevance, even when they are hidden in a continuous stream of background noise. PMID:26696863

  4. Determination of human EEG alpha entrainment ERD/ERS using the continuous complex wavelet transform

    NASA Astrophysics Data System (ADS)

    Chorlian, David B.; Porjesz, Bernice; Begleiter, Henri

    2003-04-01

    Alpha entrainment caused by exposure to a background stimulus continuously flickering at a rate of 8 1/3 Hz was affected by the appearance of a foreground target stimulus to which the subjects were requested to press a button. With the use of bipolar derivations (to reduce volume conduction effects), scalp recorded EEG potentials were subjected to a continuous wavelet transform using complex Morlet wavelets at a range of scales. Complex Morlet wavelets were used to calculate efficiently instantaneous amplitudes and phases on a per-trial basis, rather than using the Hilbert transform on band-pass filtered data. Multiple scales were employed to contrast the pattern of alpha activity with those in other bands, and to determine whether the harmonics observed in the spectral analysis of the data were simply a result of the non-sinusoidal response to the entraining signal or a distinct neural phenomenon. We were thus able to calculate desynchronization/resynchronization for both the entrained and non-entrained alpha activity. The occurance of the target stimulus caused a sharp increase in amplitude in both the entrained and non-entrained alpha activity, followed by a sharp decrease, and then a return to baseline, over a period of 2.5 seconds. However, the entrained alpha activity showed a much more rapid recovery than non-entrained activity.

  5. Out-of-synchrony speech entrainment in developmental dyslexia.

    PubMed

    Molinaro, Nicola; Lizarazu, Mikel; Lallier, Marie; Bourguignon, Mathieu; Carreiras, Manuel

    2016-08-01

    Developmental dyslexia is a reading disorder often characterized by reduced awareness of speech units. Whether the neural source of this phonological disorder in dyslexic readers results from the malfunctioning of the primary auditory system or damaged feedback communication between higher-order phonological regions (i.e., left inferior frontal regions) and the auditory cortex is still under dispute. Here we recorded magnetoencephalographic (MEG) signals from 20 dyslexic readers and 20 age-matched controls while they were listening to ∼10-s-long spoken sentences. Compared to controls, dyslexic readers had (1) an impaired neural entrainment to speech in the delta band (0.5-1 Hz); (2) a reduced delta synchronization in both the right auditory cortex and the left inferior frontal gyrus; and (3) an impaired feedforward functional coupling between neural oscillations in the right auditory cortex and the left inferior frontal regions. This shows that during speech listening, individuals with developmental dyslexia present reduced neural synchrony to low-frequency speech oscillations in primary auditory regions that hinders higher-order speech processing steps. The present findings, thus, strengthen proposals assuming that improper low-frequency acoustic entrainment affects speech sampling. This low speech-brain synchronization has the strong potential to cause severe consequences for both phonological and reading skills. Interestingly, the reduced speech-brain synchronization in dyslexic readers compared to normal readers (and its higher-order consequences across the speech processing network) appears preserved through the development from childhood to adulthood. Thus, the evaluation of speech-brain synchronization could possibly serve as a diagnostic tool for early detection of children at risk of dyslexia. Hum Brain Mapp 37:2767-2783, 2016. © 2016 Wiley Periodicals, Inc.

  6. Ethanol consumption in mice: relationships with circadian period and entrainment

    PubMed Central

    Trujillo, Jennifer L.; Do, David T.; Grahame, Nicholas J.; Roberts, Amanda J.; Gorman, Michael R.

    2011-01-01

    A functional connection between the circadian timing system and alcohol consumption is suggested by multiple lines of converging evidence. Ethanol consumption perturbs physiological rhythms in hormone secretion, sleep and body temperature, and conversely, genetic and environmental perturbations of the circadian system can alter alcohol intake. A fundamental property of the circadian pacemaker, the endogenous period of its cycle under free-running conditions, was previously shown to differ between selectively bred High- (HAP) and Low- (LAP) Alcohol Preferring replicate 1 mice. To test whether there is a causal relationship between circadian period and ethanol intake, we induced experimental, rather than genetic, variations in free-running period. Male inbred C57Bl/6J mice and replicate 2 male and female HAP2 and LAP2 mice were entrained to light:dark cycles of 26 h or 22 h or remained in a standard 24 h cycle. Upon discontinuation of the light:dark cycle, experimental animals exhibited longer and shorter free-running periods, respectively. Despite robust effects on circadian period and clear circadian rhythms in drinking, these manipulations failed to alter the daily ethanol intake of the inbred strain or selected lines. Likewise, driving the circadian system at long and short periods produced no change in alcohol intake. In contrast with replicate 1 HAP and LAP lines, there was no difference in free-running period between ethanol naïve HAP2 and LAP2 mice. HAP2 mice, however, were significantly more active than LAP2 mice as measured by general home-cage movement and wheel running, a motivated behavior implicating a selection effect on reward systems. Despite a marked circadian regulation of drinking behavior, the free-running and entrained period of the circadian clock does not determine daily ethanol intake. PMID:20880659

  7. Out-of-synchrony speech entrainment in developmental dyslexia.

    PubMed

    Molinaro, Nicola; Lizarazu, Mikel; Lallier, Marie; Bourguignon, Mathieu; Carreiras, Manuel

    2016-08-01

    Developmental dyslexia is a reading disorder often characterized by reduced awareness of speech units. Whether the neural source of this phonological disorder in dyslexic readers results from the malfunctioning of the primary auditory system or damaged feedback communication between higher-order phonological regions (i.e., left inferior frontal regions) and the auditory cortex is still under dispute. Here we recorded magnetoencephalographic (MEG) signals from 20 dyslexic readers and 20 age-matched controls while they were listening to ∼10-s-long spoken sentences. Compared to controls, dyslexic readers had (1) an impaired neural entrainment to speech in the delta band (0.5-1 Hz); (2) a reduced delta synchronization in both the right auditory cortex and the left inferior frontal gyrus; and (3) an impaired feedforward functional coupling between neural oscillations in the right auditory cortex and the left inferior frontal regions. This shows that during speech listening, individuals with developmental dyslexia present reduced neural synchrony to low-frequency speech oscillations in primary auditory regions that hinders higher-order speech processing steps. The present findings, thus, strengthen proposals assuming that improper low-frequency acoustic entrainment affects speech sampling. This low speech-brain synchronization has the strong potential to cause severe consequences for both phonological and reading skills. Interestingly, the reduced speech-brain synchronization in dyslexic readers compared to normal readers (and its higher-order consequences across the speech processing network) appears preserved through the development from childhood to adulthood. Thus, the evaluation of speech-brain synchronization could possibly serve as a diagnostic tool for early detection of children at risk of dyslexia. Hum Brain Mapp 37:2767-2783, 2016. © 2016 Wiley Periodicals, Inc. PMID:27061643

  8. A neuropeptide speeds circadian entrainment by reducing intercellular synchrony

    PubMed Central

    An, Sungwon; Harang, Rich; Meeker, Kirsten; Granados-Fuentes, Daniel; Tsai, Connie A.; Mazuski, Cristina; Kim, Jihee; Doyle, Francis J.; Petzold, Linda R.; Herzog, Erik D.

    2013-01-01

    Shift work or transmeridian travel can desynchronize the body's circadian rhythms from local light–dark cycles. The mammalian suprachiasmatic nucleus (SCN) generates and entrains daily rhythms in physiology and behavior. Paradoxically, we found that vasoactive intestinal polypeptide (VIP), a neuropeptide implicated in synchrony among SCN cells, can also desynchronize them. The degree and duration of desynchronization among SCN neurons depended on both the phase and the dose of VIP. A model of the SCN consisting of coupled stochastic cells predicted both the phase- and the dose-dependent response to VIP and that the transient phase desynchronization, or “phase tumbling”, could arise from intrinsic, stochastic noise in small populations of key molecules (notably, Period mRNA near its daily minimum). The model also predicted that phase tumbling following brief VIP treatment would accelerate entrainment to shifted environmental cycles. We tested this using a prepulse of VIP during the day before a shift in either a light cycle in vivo or a temperature cycle in vitro. Although VIP during the day does not shift circadian rhythms, the VIP pretreatment approximately halved the time required for mice to reentrain to an 8-h shifted light schedule and for SCN cultures to reentrain to a 10-h shifted temperature cycle. We conclude that VIP below 100 nM synchronizes SCN cells and above 100 nM reduces synchrony in the SCN. We show that exploiting these mechanisms that transiently reduce cellular synchrony before a large shift in the schedule of daily environmental cues has the potential to reduce jet lag. PMID:24167276

  9. Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation Channel

    SciTech Connect

    Pearson, Walter H.; Kohn, Nancy P.; Skalski, J. R.

    2006-09-30

    Proposed dredging of the Columbia River has raised concerns about related impacts on Dungeness crab in the Columbia River Estuary (CRE). This study follows two major efforts, sponsored by the Portland District of the U. S. Army Corps of Engineers (USACE) to quantify the number of crabs entrained by a hopper dredge working in the CRE. From June 2002 through September 2002, Pacific Northwest National Laboratory (PNNL) conducted direct measurements of crab entrainment in the CRE from the mouth of the Columbia River (MCR, river mile -3 to +3) upriver as far as Miller Sands (river mile 21 to 24). These studies constituted a major step in quantifying crab entrainment in the CRE, and allowed statistically bounded projections of adult equivalent loss (AEL) for Dungeness crab populations under a range of future construction dredging and maintenance dredging scenarios (Pearson et al. 2002, 2003). In 2004, PNNL performed additional measurements to improve estimates of crab entrainment at Desdemona Shoals and at Flavel Bar, a reach near Astoria that had not been adequately sampled in 2002 (Figure 1). The 2004 data were used to update the crab loss projections for channel construction to 43 ft MLLW. In addition, a correlation between bottom salinity and adult (age 2+ and 3+, >100 mm carapace width) crab entrainment was developed using 2002 data, and elaborated upon with the 2004 data. This crab salinity model was applied to forecasting seasonal (monthly) entrainment rates and AEL using seasonal variations in salinity (Pearson et al. 2005). In the previous studies, entrainment rates in Desdemona Shoals were more variable than in any of the other reaches. Pearson et al. (2005) concluded that ?the dynamics behind the variable entrainment rates at Desdemona Shoals are not fully understood,? as well as finding that juvenile crab entrainment was not significantly correlated with salinity as it was for older crab. The present study was undertaken to address the question of whether the

  10. Quantification of the effect of oil layer thickness on entrainment of surface oil.

    PubMed

    Zeinstra-Helfrich, Marieke; Koops, Wierd; Dijkstra, Klaas; Murk, Albertinka J

    2015-07-15

    This study quantifies the effect of oil layer thickness on entrainment and dispersion of oil into seawater, using a plunging jet with a camera system. In contrast to what is generally assumed, we revealed that for the low viscosity "surrogate MC252 oil" we used, entrainment rate is directly proportional to layer thickness. Furthermore, the volume of stably suspended small oil droplets increases with energy input (plunge height) and is mostly proportional to layer thickness. Oil pre-treated with dispersants (dispersant-oil ratio ranges from 1:50 to 1:300) is greatly entrained in such large amounts of small droplets that quantification was impossible with the camera system. Very low interfacial tension causes entrainment by even minor secondary surface disturbances. Our results indicate that the effect of oil layer thickness should be included in oil entrainment and dispersion modelling. PMID:26002094

  11. The effect of entrainment on the timing of periodic eye movements.

    PubMed

    Richardson, Brian A; Balasubramaniam, Ramesh

    2010-01-18

    We performed an experiment in which eight healthy individuals made periodic eye movements at five pacing interval conditions (500 ms, 750 ms, 1000 ms, 1250 ms, and 1500 ms). Three methods of entrainment were used in the synchronization phase: saccade, continuous pursuit and discontinuous pursuit. The stimulus train was extinguished and in the continuation phase, subjects made saccadic eye movements at the entrained movement frequencies between two static targets. Using the Wing-Kristofferson model, clock and motor variance were extracted from the time series of continuation trials for all three entrainment conditions. Our results revealed a main effect of time interval on total variance clock variance (as predicted by Weber's law) and on motor variance. We also report that the pursuit entrainment conditions resulted in and mean duration and variance to the saccade entrainment. These results suggest that the neural networks recruited to support a periodic motor timing task depend on the method used to establish the temporal reference.

  12. Experimental study of near-field entrainment of moderately overpressured jets

    USGS Publications Warehouse

    Solovitz, S.A.; Mastin, L.G.; Saffaraval, F.

    2011-01-01

    Particle image velocimetry (PIV) experiments have been conducted to study the velocity flow fields in the developing flow region of high-speed jets. These velocity distributions were examined to determine the entrained mass flow over a range of geometric and flow conditions, including overpressured cases up to an overpressure ratio of 2.83. In the region near the jet exit, all measured flows exhibited the same entrainment up until the location of the first shock when overpressured. Beyond this location, the entrainment was reduced with increasing overpressure ratio, falling to approximately 60 of the magnitudes seen when subsonic. Since entrainment ratios based on lower speed, subsonic results are typically used in one-dimensional volcanological models of plume development, the current analytical methods will underestimate the likelihood of column collapse. In addition, the concept of the entrainment ratio normalization is examined in detail, as several key assumptions in this methodology do not apply when overpressured.

  13. How oil properties and layer thickness determine the entrainment of spilled surface oil.

    PubMed

    Zeinstra-Helfrich, Marieke; Koops, Wierd; Murk, Albertinka J

    2016-09-15

    Viscosity plays an important role in dispersion of spilled surface oil, so does adding chemical dispersants. For seven different oil grades, entrainment rate and initial droplet size distribution were investigated using a plunging jet apparatus with coupled camera equipment and subsequent image analysis. We found that amount of oil entrained is proportional to layer thickness and largely independent of oil properties: A dispersant dose of 1:200 did not result in a significantly different entrainment rate compared to no dispersants. Oil viscosity had a minor to no influence on entrainment rate, until a certain threshold above which entrainment was impeded. The mean droplet size scales with the modified Weber number as described by Johansen. The obtained results can help improve dispersion algorithms in oil spill fate and transport models, to aid making an informed decision about application of dispersants.

  14. How oil properties and layer thickness determine the entrainment of spilled surface oil.

    PubMed

    Zeinstra-Helfrich, Marieke; Koops, Wierd; Murk, Albertinka J

    2016-09-15

    Viscosity plays an important role in dispersion of spilled surface oil, so does adding chemical dispersants. For seven different oil grades, entrainment rate and initial droplet size distribution were investigated using a plunging jet apparatus with coupled camera equipment and subsequent image analysis. We found that amount of oil entrained is proportional to layer thickness and largely independent of oil properties: A dispersant dose of 1:200 did not result in a significantly different entrainment rate compared to no dispersants. Oil viscosity had a minor to no influence on entrainment rate, until a certain threshold above which entrainment was impeded. The mean droplet size scales with the modified Weber number as described by Johansen. The obtained results can help improve dispersion algorithms in oil spill fate and transport models, to aid making an informed decision about application of dispersants. PMID:27345705

  15. Experimental studies on an air-air jet exhaust pump

    SciTech Connect

    Chou, S.K.

    1986-01-01

    Industrial ventilation employing an air-air jet exhaust pump connected to a compressed-air line was investigated. The motive air supply pressure was maintained between 2 and 3 bar. A unique ejector housing was constructed to receive both the convergent-divergent primary nozzle and the mixing chamber. The entire unit adapts readily to any existing compressed-air system. The mixing chamber was so constructed that the length of its cylindrical section may be changed. Pressure variations along the mixing chamber were recorded, and this offered a valuable appreciation of the effects of the length-to-diameter ratios. Results indicate the influence of the supply air pressure and pressure ratio on the jet entrainment capacity and efficiency. It has also been shown that the present design is capable of achieving the maximum reported jet-pump efficiency of around 25% corresponding to a nozzle-to-mixing chamber area ratio of 0.15.

  16. The performative pleasure of imprecision: a diachronic study of entrainment in music performance.

    PubMed

    Geeves, Andrew; McIlwain, Doris J; Sutton, John

    2014-01-01

    This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance.

  17. The performative pleasure of imprecision: a diachronic study of entrainment in music performance

    PubMed Central

    Geeves, Andrew; McIlwain, Doris J.; Sutton, John

    2014-01-01

    This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance. PMID:25400567

  18. Combined air and water pollution control system

    NASA Technical Reports Server (NTRS)

    Wolverton, Billy C. (Inventor); Jarrell, Lamont (Inventor)

    1990-01-01

    A bioaquatic air pollution control system for controlling both water and atmospheric pollution is disclosed. The pollution control system includes an exhaust for directing polluted gases out of a furnace and a fluid circulating system which circulates fluid, such as waste water, from a source, past the furnace where the fluid flow entrains the pollutants from the furnace. The combined fluid and pollutants are then directed through a rock/plant/microbial filtering system. A suction pump pumps the treated waste water from the filter system past the exhaust to again entrain more pollutants from the furnace where they are combined with the fluid (waste water) and directed to the filter system.

  19. Properties of Portland cement concretes containing pozzolanic admixtures

    NASA Astrophysics Data System (ADS)

    Simmons, D. D.; Pasko, T. J., Jr.; Jones, W. R.

    1981-04-01

    A laboratory comparison was made of the properties of a concrete containing no pozzolan with several mixtures containing pozzolans. Used were a natural pozzolan (Lassenite), two fly ashes of different fineness and low carbon and an amorphous silica fume dust from a metal-producing plant. One cement, one coarse crushed limestone aggregate, and one fine river aggregate were used. Replacing a faster reacting binder with a slower one, produced lower early strengths and adversely affected the properties which are highly dependent on strength. The measures of durability were greatly affected by the air contents and aging or treatment prior to exposure. The amorphous silica fume dust increased the early strengths of a fly ash mixture.

  20. Flow Dynamics and Sediment Entrainment in Natural Turbidity Currents Inferred from Numerical Modeling

    NASA Astrophysics Data System (ADS)

    Traer, M. M.; Hilley, G. E.; Fildani, A.

    2009-12-01

    Submarine turbidity currents derive their momentum from gravity acting upon the density contrast between sediment-laden and clear water, and so unlike fluvial systems, the dynamics of such flows are inextricably linked to the rates at which they deposit and entrain sediment. We have analyzed the sensitivity of the growth and maintenance of turbidity currents to sediment entrainment and deposition using the layer-averaged equations of conservation of fluid and sediment mass, and conservation of momentum and turbulent kinetic energy. Our model results show that the dynamics of turbidity currents are extremely sensitive to the functional form and empirical constants of the relationship between sediment entrainment and friction velocity. Data on the relationship between sediment entrainment and friction velocity for submarine density flows are few and as a result, entrainment formulations are populated with data from sub-aerial flows not driven by the density contrast between clear and turbid water. If we entertain the possibility that sediment entrainment in sub-aerial rivers is different than in dense underflows, flow parameters such as velocity, height, and concentration were found nearly impossible to predict beyond a few hundred meters based on the limited laboratory data available that constrain the sediment entrainment process in turbidity currents. The sensitivity of flow dynamics to the functional relationship between friction velocity and sediment entrainment indicates that independent calibration of a sediment entrainment law in the submarine environment is necessary to realistically predict the dynamics of these flows and the resulting patterns of erosion and deposition. To calibrate such a relationship, we have developed an inverse methodology that utilizes existing submarine channel morphology as a means of constraining the sediment entrainment function parameters. We use a Bayesian Metropolis-Hastings sampler to determine the sediment entrainment

  1. What causes birth order-intelligence patterns? The admixture hypothesis, revived.

    PubMed

    Rodgers, J L

    2001-01-01

    Recent evidence shows that the relation between birth order and intelligence is not the same in cross-sectional and within-family data. This simple empirical observation invalidates the conclusions from hundreds of previous birth order studies that relied on cross-sectional data. Simultaneously, the empirical foundation disappears from underneath theories like dilution and the confluence model that use explanatory processes occurring within the family. A theory proposed almost 25 years ago--the admixture hypothesis--effectively accounts for these empirical patterns. In this article, the author describes why birth order is of such intense interest to both parents and researchers (the birth order trap), discusses past birth order-intelligence patterns, shows that the admixture hypothesis accounts for those patterns, and reframes the original argument to support future productive research efforts.

  2. Direct-to-Consumer Racial Admixture Tests and Beliefs About Essential Racial Differences

    PubMed Central

    Phelan, Jo C.; Link, Bruce G.; Zelner, Sarah; Yang, Lawrence H.

    2015-01-01

    Although at first relatively disinterested in race, modern genomic research has increasingly turned attention to racial variations. We examine a prominent example of this focus—direct-to-consumer racial admixture tests—and ask how information about the methods and results of these tests in news media may affect beliefs in racial differences. The reification hypothesis proposes that by emphasizing a genetic basis for race, thereby reifying race as a biological reality, the tests increase beliefs that whites and blacks are essentially different. The challenge hypothesis suggests that by describing differences between racial groups as continua rather than sharp demarcations, the results produced by admixture tests break down racial categories and reduce beliefs in racial differences. A nationally representative survey experiment (N = 526) provided clear support for the reification hypothesis. The results suggest that an unintended consequence of the genomic revolution may be to reinvigorate age-old beliefs in essential racial differences. PMID:25870464

  3. The origin of early age expansions induced in cementitious materials containing shrinkage reducing admixtures

    SciTech Connect

    Sant, Gaurav; Lothenbach, Barbara; Juilland, Patrick; Le Saout, Gwenn; Weiss, Jason; Scrivener, Karen

    2011-03-15

    Studies on the early-age shrinkage behavior of cement pastes, mortars, and concretes containing shrinkage reducing admixtures (SRAs) have indicated these mixtures frequently exhibit an expansion shortly after setting. While the magnitude of the expansion has been noted to be a function of the chemistry of the cement and the admixture dosage; the cause of the expansion is not clearly understood. This investigation uses measurements of autogenous deformation, X-ray diffraction, pore solution analysis, thermogravimetry, and scanning electron microscopy to study the early-age properties and describe the mechanism of the expansion in OPC pastes made with and without SRA. The composition of the pore solution indicates that the presence of the SRA increases the portlandite oversaturation level in solution which can result in higher crystallization stresses which could lead to an expansion. This observation is supported by deformation calculations for the systems examined.

  4. Consequences of meta-stable (177m)Lu admixture in (177)Lu for patient dosimetry.

    PubMed

    Konijnenberg, Mark W

    2015-01-01

    Lutetium-177 ((177)Lu) is a rare earth metal in the lanthanides series which decays by beta emission with a half life of 6.647 days to three excited states and the ground state of (177)Hf. When (177)Lu is produced by neutron capture in (176)Lu, inevitably an admixture is formed of the long-lived isomer (177)mLu. As its half-life of 160.4 days is so much longer than that of (177)Lu, concerns are raised on its possible enhancement in radiation dose to the patient treated with (177)Lu-DOTA-octreotate. This report evaluates this possible enhancement of the absorbed dose, based on the published pharmacokinetic profile of (177)Lu-DOTA-octreotate and assuming an admixture of 1 kBq (177)mLu /MBq (177)Lu (0.1%).

  5. Scheduled daily exercise or feeding alters the phase of photic entrainment in Syrian hamsters.

    PubMed

    Mistlberger, R E

    1991-12-01

    Single daily bouts of appropriately timed activity can phase-shift or entrain circadian rhythms in rodents maintained in constant dark (DD). Whether this apparent feedback of behavioral activity to the circadian pacemaker has any adaptive significance in nuclear; circadian rhythms are normally entrained by light-dark (LD) cycles, and this may override any effects of activity. To address this issue, the phase of entrainment to LD cycles was examined in hamsters exposed to a daily exercise schedule (3 h of induced wheel running). Hamsters exercised late in the dark showed a significant delay of entrained phase in LD (i.e., they became relative "night owls") and lengthening of free-running periodicity in DD, compared to controls and hamsters exercised in midlight. Hamsters fed in midlight (arousal without wheel running) showed a significant advance of LD entrained phase (i.e., they became "early birds"). These observations provide the necessary rationale for further examination of the functional significance of behavioral feedback for the normal entrainment process. In addition, they rise the possibility that the entrained phase of human circadian rhythms can be similarly manipulated by behavioral procedures such as timed exercise.

  6. Neurobiological foundations of neurologic music therapy: rhythmic entrainment and the motor system

    PubMed Central

    Thaut, Michael H.; McIntosh, Gerald C.; Hoemberg, Volker

    2015-01-01

    Entrainment is defined by a temporal locking process in which one system’s motion or signal frequency entrains the frequency of another system. This process is a universal phenomenon that can be observed in physical (e.g., pendulum clocks) and biological systems (e.g., fire flies). However, entrainment can also be observed between human sensory and motor systems. The function of rhythmic entrainment in rehabilitative training and learning was established for the first time by Thaut and colleagues in several research studies in the early 1990s. It was shown that the inherent periodicity of auditory rhythmic patterns could entrain movement patterns in patients with movement disorders (see for a review: Thaut et al., 1999). Physiological, kinematic, and behavioral movement analysis showed very quickly that entrainment cues not only changed the timing of movement but also improved spatial and force parameters. Mathematical models have shown that anticipatory rhythmic templates as critical time constraints can result in the complete specification of the dynamics of a movement over the entire movement cycle, thereby optimizing motor planning and execution. Furthermore, temporal rhythmic entrainment has been successfully extended into applications in cognitive rehabilitation and speech and language rehabilitation, and thus become one of the major neurological mechanisms linking music and rhythm to brain rehabilitation. These findings provided a scientific basis for the development of neurologic music therapy. PMID:25774137

  7. Fish and opossum shrimp entrainment in the Mt. Elbert Pumped-Storage Power Plant

    SciTech Connect

    Maiolie, M.A.

    1987-01-01

    Impacts of operating the Mt. Elbert Pumped-Storage Power Plant on fish and opossum shrimp (mysis relicta) were investigated from 1981 to 1985 at Twin Lakes, Colorado to determine any negative effects on the Twin Lakes fishery. Daytime generation cycles entrained shrimp at densities averaging 0.05 to 0.23 shrimp/m/sup 3/ of discharge. Eight hour daytime generation cycles would entrain 50,000 to 300,000 shrimp at these rates. Generation cycles which occurred after dark entrained many times more shrimp with densities as high as 1.21 shrimp/m/sup 3/ of discharge. Entrainment density during nighttime pump-back cycles was much greater; averaging 2 to 17 shrimp/m/sup 3/ discharged. Six to 44 million shrimp were entrained during typical 8 h pump-back cycles. Differences between daytime and nighttime entrainment rates appeared to be caused by migration of shrimp into the water column at night making them more vulnerable to entrainment. Losses were estimated to have reduced Lower Twin Lake shrimp abundance by 39% in 1985.

  8. Unscreened water-diversion pipes pose an entrainment risk to the threatened green sturgeon, Acipenser medirostris.

    PubMed

    Mussen, Timothy D; Cocherell, Dennis; Poletto, Jamilynn B; Reardon, Jon S; Hockett, Zachary; Ercan, Ali; Bandeh, Hossein; Kavvas, M Levent; Cech, Joseph J; Fangue, Nann A

    2014-01-01

    Over 3,300 unscreened agricultural water diversion pipes line the levees and riverbanks of the Sacramento River (California) watershed, where the threatened Southern Distinct Population Segment of green sturgeon, Acipenser medirostris, spawn. The number of sturgeon drawn into (entrained) and killed by these pipes is greatly unknown. We examined avoidance behaviors and entrainment susceptibility of juvenile green sturgeon (35±0.6 cm mean fork length) to entrainment in a large (>500-kl) outdoor flume with a 0.46-m-diameter water-diversion pipe. Fish entrainment was generally high (range: 26-61%), likely due to a lack of avoidance behavior prior to entering inescapable inflow conditions. We estimated that up to 52% of green sturgeon could be entrained after passing within 1.5 m of an active water-diversion pipe three times. These data suggest that green sturgeon are vulnerable to unscreened water-diversion pipes, and that additional research is needed to determine the potential impacts of entrainment mortality on declining sturgeon populations. Data under various hydraulic conditions also suggest that entrainment-related mortality could be decreased by extracting water at lower diversion rates over longer periods of time, balancing agricultural needs with green sturgeon conservation. PMID:24454967

  9. Fish entrainment rates through towboat propellers in the Upper Mississippi and Illinois rivers

    USGS Publications Warehouse

    Jack, Killgore K.; Miranda, L.E.; Murphy, C.E.; Wolff, D.M.; Hoover, J.J.; Keevin, T.M.; Maynord, S.T.; Cornish, M.A.

    2011-01-01

    Aspecially designed netwas used to study fish entrainment and injury through towboat propellers in 13 pools of the Upper Mississippi and Illinois rivers. The net was attached to the stern of a 48.8-m-long towboat with twin propellers (in Kort propulsion nozzles), and sampling typically took place while the towboat pushed 15 loaded barges upstream at a time. In total, 254 entrainment samples over 894 km of the 13 study pools were collected. The sampling efforts produced 16,005 fish representing 15 families and at least 44 species; fish ranged in total length from 3 to 123 cm, but only 12.5-cm or longer fish were analyzed because smaller fish could escape through the mesh of the trawl. Clupeidae (68% of total catch) and Sciaenidae (21%) were the dominant families. We detected no effects of towboat operation variables (speed and engine [i.e., propeller] revolutions per minute [RPM]) on entrainment rate (i.e., fish/km), but entrainment rate showed a wedge-shaped distribution relative to hydraulic and geomorphic characteristics of the channel. Entrainment rate was low (30 fish/km). Although total entrainment rate was not related to engine RPM, the probability of being struck by a propeller increased with fish length and engine RPM. Limits on engine RPM in narrow, shallow, and sluggish reaches could reduce entrainment impact, particularly for large-bodied fish. ?? American Fisheries Society 2011.

  10. Quadrupedal Locomotion-Respiration Entrainment and Metabolic Economy in Cross-Country Skiers.

    PubMed

    Boldt, Kevin; Killick, Anthony; Herzog, Walter

    2016-02-01

    A 1:1 locomotion-respiration entrainment is observed in galloping quadrupeds, and is thought to improve running economy. However, this has not been tested directly in animals, as animals cannot voluntarily disrupt this entrainment. The purpose of this study was to evaluate metabolic economy in a human gait involving all four limbs, cross-country skiing, in natural entrainment and forced nonentrainment. Nine elite cross-country skiers roller skied at constant speed using the 2-skate technique. In the first and last conditions, athletes used the natural entrained breathing pattern: inhaling with arm recovery and exhaling with arm propulsion, and in the second condition, the athletes disentrained their breathing pattern. The rate of oxygen uptake (VO2) and metabolic rate (MR) were measured via expired gas analysis. Propulsive forces were measured with instrumented skis and poles. VO2 and MR increased by 4% and 5% respectively when skiers used the disentrained compared with the entrained breathing pattern. There were no differences in ski or pole forces or in timing of the gait cycle between conditions. We conclude that breathing entrainment reduces metabolic cost of cross-country skiing by approximately 4%. Further, this reduction is likely a result of the entrainment rather than alterations in gait mechanics.

  11. Marching along to an Offbeat Drum: Entrainment of Synthetic Gene Oscillators by a Noisy Stimulus.

    PubMed

    Butzin, Nicholas C; Hochendoner, Philip; Ogle, Curtis T; Hill, Paul; Mather, William H

    2016-02-19

    Modulation of biological oscillations by stimuli lies at the root of many phenomena, including maintenance of circadian rhythms, propagation of neural signals, and somitogenesis. While it is well established that regular periodic modulation can entrain an oscillator, an aperiodic (noisy) modulation can also robustly entrain oscillations. This latter scenario may describe, for instance, the effect of irregular weather patterns on circadian rhythms, or why irregular neural stimuli can still reliably transmit information. A synthetic gene oscillator approach has already proven to be useful in understanding the entrainment of biological oscillators by periodic signaling, mimicking the entrainment of a number of noisy oscillating systems. We similarly seek to use synthetic biology as a platform to understand how aperiodic signals can strongly correlate the behavior of cells. This study should lead to a deeper understanding of how fluctuations in our environment and even within our body may promote substantial synchrony among our cells. Specifically, we investigate experimentally and theoretically the entrainment of a synthetic gene oscillator in E. coli by a noisy stimulus. This phenomenon was experimentally studied and verified by a combination of microfluidics and microscopy using the real synthetic circuit. Stochastic simulation of an associated model further supports that the synthetic gene oscillator can be strongly entrained by aperiodic signals, especially telegraph noise. Finally, widespread applicability of aperiodic entrainment beyond the synthetic gene oscillator is supported by results derived from both a model for a natural oscillator in D. discoideum and a model for predator-prey oscillations. PMID:26524465

  12. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence.

    PubMed

    Molofsky, Jane; Keller, Stephen R; Lavergne, Sébastien; Kaproth, Matthew A; Eppinga, Maarten B

    2014-04-01

    Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological organization such as communities and ecosystems. Because biological invasions frequently involve the admixture of previously isolated lineages as a result of human-aided dispersal, studies of invasive populations can reveal how admixture results in novel genotypes and shifts in functional trait variation within populations. Further, because invasive species can be ecosystem engineers within invaded ecosystems, admixture-induced shifts in the functional traits of invaders can affect the composition of native biodiversity and alter the flow of resources through the system. Thus, invasions represent promising yet under-investigated examples of how the effects of short-term evolutionary changes can cascade across biological scales of diversity. Here, we propose a conceptual framework that admixture between divergent source populations during biological invasions can reorganize the genetic variation underlying key functional traits, leading to shifts in the mean and variance of functional traits within invasive populations. Changes in the mean or variance of key traits can initiate new ecological feedback mechanisms that result in a critical transition from a native ecosystem to a novel invasive ecosystem. We illustrate the application of this framework with reference to a well-studied plant model system in invasion biology and show how a combination of quantitative genetic experiments, functional trait studies, whole ecosystem field studies and modeling can be used to explore the dynamics predicted to trigger these critical transitions.

  13. GWAS and admixture mapping identify different asthma-associated loci in Latinos: The GALA II Study

    PubMed Central

    Galanter, Joshua M; Gignoux, Christopher R; Torgerson, Dara G; Roth, Lindsey A; Eng, Celeste; Oh, Sam S; Nguyen, Elizabeth A; Drake, Katherine A; Huntsman, Scott; Hu, Donglei; Sen, Saunak; Davis, Adam; Farber, Harold J.; Avila, Pedro C.; Brigino-Buenaventura, Emerita; LeNoir, Michael A.; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodríguez-Cintrón, William; Estrada, Andres Moreno; Mendoza, Karla Sandoval; Winkler, Cheryl A.; Klitz, William; Romieu, Isabelle; London, Stephanie J.; Gilliland, Frank; Martinez, Fernando; Bustamante, Carlos; Williams, L Keoki; Kumar, Rajesh; Rodríguez-Santana, José R.; Burchard, and Esteban G.

    2013-01-01

    Background Asthma is a complex disease with both genetic and environmental causes. Genome-wide association studies of asthma have mostly involved European populations and replication of positive associations has been inconsistent. Objective To identify asthma-associated genes in a large Latino population with genome-wide association analysis and admixture mapping. Methods Latino children with asthma (n = 1,893) and healthy controls (n = 1,881) were recruited from five sites in the United States: Puerto Rico, New York, Chicago, Houston, and the San Francisco Bay Area. Subjects were genotyped on an Affymetrix World Array IV chip. We performed genome-wide association and admixture mapping to identify asthma-associated loci. Results We identified a significant association between ancestry and asthma at 6p21 (lowest p-value: rs2523924, p < 5 × 10−6). This association replicates in a meta-analysis of the EVE Asthma Consortium (p = 0.01). Fine mapping of the region in this study and the EVE Asthma Consortium suggests an association between PSORS1C1 and asthma. We confirmed the strong allelic association between the 17q21 asthma in Latinos (IKZF3, lowest p-value: rs90792, OR: 0.67, 95% CI 0.61 – 0.75, p = 6 × 10−13) and replicated associations in several genes that had previously been associated with asthma in genome-wide association studies. Conclusions Admixture mapping and genome-wide association are complementary techniques that provide evidence for multiple asthma-associated loci in Latinos. Admixture mapping identifies a novel locus on 6p21 that replicates in a meta-analysis of several Latino populations, while genome-wide association confirms the previously identified locus on 17q21. PMID:24406073

  14. Intraspecific Genetic Admixture and the Morphological Diversification of an Estuarine Fish Population Complex

    PubMed Central

    Legault, Michel

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

  15. Using a microcomputer to support an I.V. admixture service.

    PubMed

    Sylvan, L; Lenihan, L

    1983-07-01

    Acquisition of a microcomputer and a high-speed printer enabled the authors' pharmacy to automate the production of I.V. additive labels. This automation freed 0.5 FTEs of pharmacy personnel time for other duties. This low-cost microcomputer and printer has proven to be sufficient equipment for the support of an I.V. admixture program with time-saving and cost-saving applications.

  16. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence

    PubMed Central

    Molofsky, Jane; Keller, Stephen R; Lavergne, Sébastien; Kaproth, Matthew A; Eppinga, Maarten B

    2014-01-01

    Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological organization such as communities and ecosystems. Because biological invasions frequently involve the admixture of previously isolated lineages as a result of human-aided dispersal, studies of invasive populations can reveal how admixture results in novel genotypes and shifts in functional trait variation within populations. Further, because invasive species can be ecosystem engineers within invaded ecosystems, admixture-induced shifts in the functional traits of invaders can affect the composition of native biodiversity and alter the flow of resources through the system. Thus, invasions represent promising yet under-investigated examples of how the effects of short-term evolutionary changes can cascade across biological scales of diversity. Here, we propose a conceptual framework that admixture between divergent source populations during biological invasions can reorganize the genetic variation underlying key functional traits, leading to shifts in the mean and variance of functional traits within invasive populations. Changes in the mean or variance of key traits can initiate new ecological feedback mechanisms that result in a critical transition from a native ecosystem to a novel invasive ecosystem. We illustrate the application of this framework with reference to a well-studied plant model system in invasion biology and show how a combination of quantitative genetic experiments, functional trait studies, whole ecosystem field studies and modeling can be used to explore the dynamics predicted to trigger these critical transitions. PMID:24772269

  17. Photic entrainment of Period mutant mice is predicted from their phase response curves

    PubMed Central

    Pendergast, Julie S.; Friday, Rio C.; Yamazaki, Shin

    2010-01-01

    A fundamental property of circadian clocks is that they entrain to environmental cues. The circadian genes, Period1 and Period2, are involved in entrainment of the mammalian circadian system. To investigate the roles of the Period genes in photic entrainment, we constructed phase response curves (PRC) to light pulses for C57BL/6J wild-type, Per1−/−, Per2−/−, and Per3−/− mice and tested whether the PRCs accurately predict entrainment to non-24 light-dark cycles (T-cycles) and constant light (LL). The PRCs of wild-type and Per3−/− mice are similar in shape and amplitude and have relatively large delay zones and small advance zones, resulting in successful entrainment to T26, but not T21, with similar phase angles. Per1−/− mice have a high-amplitude PRC, resulting in entrainment to a broad range of T-cycles. Per2−/− mice also entrain to a wide range of T-cycles because the advance portion of their PRC is larger than wild-types. Period aftereffects following entrainment to T-cycles were similar among all genotypes. We found that the ratio of the advance portion to the delay portion of the PRC accurately predicts the lengthening of the period of the activity rhythm in LL. Wild-type, Per1−/−, and Per3−/− mice had larger delay zones than advance zones and lengthened (>24hrs) periods in LL, while Per2−/− mice had delay and advance zones that were equal in size and no period lengthening in LL. Together, these results demonstrate that PRCs are powerful tools for predicting and understanding photic entrainment of circadian mutant mice. PMID:20826680

  18. EEG oscillations entrain their phase to high-level features of speech sound.

    PubMed

    Zoefel, Benedikt; VanRullen, Rufin

    2016-01-01

    Phase entrainment of neural oscillations, the brain's adjustment to rhythmic stimulation, is a central component in recent theories of speech comprehension: the alignment between brain oscillations and speech sound improves speech intelligibility. However, phase entrainment to everyday speech sound could also be explained by oscillations passively following the low-level periodicities (e.g., in sound amplitude and spectral content) of auditory stimulation-and not by an adjustment to the speech rhythm per se. Recently, using novel speech/noise mixture stimuli, we have shown that behavioral performance can entrain to speech sound even when high-level features (including phonetic information) are not accompanied by fluctuations in sound amplitude and spectral content. In the present study, we report that neural phase entrainment might underlie our behavioral findings. We observed phase-locking between electroencephalogram (EEG) and speech sound in response not only to original (unprocessed) speech but also to our constructed "high-level" speech/noise mixture stimuli. Phase entrainment to original speech and speech/noise sound did not differ in the degree of entrainment, but rather in the actual phase difference between EEG signal and sound. Phase entrainment was not abolished when speech/noise stimuli were presented in reverse (which disrupts semantic processing), indicating that acoustic (rather than linguistic) high-level features play a major role in the observed neural entrainment. Our results provide further evidence for phase entrainment as a potential mechanism underlying speech processing and segmentation, and for the involvement of high-level processes in the adjustment to the rhythm of speech.

  19. Dissecting the genetic structure and admixture of four geographical Malay populations

    PubMed Central

    Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; Janaka de Silva, H.; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R.; Teo, Yik-Ying; Xu, Shuhua

    2015-01-01

    The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%–62%), Proto-Malay (15%–31%), East Asian (4%–16%) and South Asian (3%–34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations. PMID:26395220

  20. Dissecting the genetic structure and admixture of four geographical Malay populations.

    PubMed

    Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; de Silva, H Janaka; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R; Teo, Yik-Ying; Xu, Shuhua

    2015-01-01

    The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%-62%), Proto-Malay (15%-31%), East Asian (4%-16%) and South Asian (3%-34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations. PMID:26395220

  1. Effect of chemical admixtures on properties of high-calcium fly ash geopolymer

    NASA Astrophysics Data System (ADS)

    Rattanasak, Ubolluk; Pankhet, Kanokwan; Chindaprasirt, Prinya

    2011-06-01

    Owing to the high viscosity of sodium silicate solution, fly ash geopolymer has the problems of low workability and rapid setting time. Therefore, the effect of chemical admixtures on the properties of fly ash geopolymer was studied to overcome the rapid set of the geopolymer in this paper. High-calcium fly ash and alkaline solution were used as starting materials to synthesize the geopolymer. Calcium chloride, calcium sulfate, sodium sulfate, and sucrose at dosages of 1wt% and 2wt% of fly ash were selected as admixtures based on concrete knowledge to improve the properties of the geopolymer. The setting time, compressive strength, and degree of reaction were recorded, and the microstructure was examined. The results show that calcium chloride significantly shortens both the initial and final setting times of the geopolymer paste. In addition, sucrose also delays the final setting time significantly. The degrees of reaction of fly ash in the geopolymer paste with the admixtures are all higher than those of the control paste. This contributes to the obvious increases in compressive strength.

  2. A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle

    PubMed Central

    Hillis, David M.

    2014-01-01

    Genomic data facilitate opportunities to track complex population histories of divergence and gene flow. We developed a metric, scaled block size (SBS), which uses the nonrecombined block size of introgressed regions of chromosomes to differentiate between recent and ancient types of admixture, and applied it to the reconstruction of admixture in cattle. Cattle are descendants of 2 independently domesticated lineages, taurine and indicine, which diverged more than 200 000 years ago. Several breeds have hybrid ancestry between these divergent lineages. Using 47 506 single-nucleotide polymorphisms, we analyzed the genomic architecture of the ancestry of 1369 individuals. We focused on 4 groups with admixed ancestry, including 2 anciently admixed African breeds (n = 58; n = 43), New World cattle of Spanish origin (n = 51), and known recent hybrids (n = 46). We estimated the ancestry of chromosomal regions for each individual and used the SBS metric to differentiate the timing of admixture among groups and among individuals within groups. By comparing SBS values of test individuals with standards with known recent hybrid ancestry, we were able to differentiate individuals of recent hybrid origin from other admixed cattle. We also estimated ancestry at the chromosomal scale. The X chromosome exhibits reduced indicine ancestry in recent hybrid, New World, and western African cattle, with virtually no evidence of indicine ancestry in New World cattle. PMID:24510946

  3. Uncontrolled admixture and loss of genetic diversity in a local Vietnamese pig breed

    PubMed Central

    Berthouly-Salazar, Cécile; Thévenon, Sophie; Van, Thu Nhu; Nguyen, Binh Trong; Pham, Lan Doan; Chi, Cuong Vu; Maillard, Jean-Charles

    2012-01-01

    The expansion of intensive livestock production systems in developing countries has increased the introduction of highly productive exotic breeds facilitating indiscriminate crossbreeding with local breeds. In this study, we set out to investigate the genetic status of the Vietnamese Black H’mong pig breed by evaluating (1) genetic diversity and (2) introgression from exotic breeds. Two exotic breeds, namely Landrace and Yorkshire used for crossbreeding, and the H’mong pig population from Ha Giang (HG) province were investigated using microsatellite markers. Within the province, three phenotypes were observed: a White, a Spotted and a Black phenotype. Genetic differentiation between phenotypes was low (0.5–6.1%). The White phenotypes showed intermediate admixture values between exotic breeds and the Black HG population (0.53), indicating a crossbreed status. Management practices were used to predict the rate of private diversity loss due to exotic gene introgressions. After 60 generations, 100% of Black private alleles will be lost. This loss is accelerated if the admixture rate is increased but can be slowed down if the mortality rate (e.g., recruitment rate) is decreased. Our study showed that a large number of markers are needed for accurately identifying hybrid classes for closely related populations. While our estimate of admixture still seems underestimated, genetic erosion can occur very fast even through indiscriminate crossbreeding. PMID:22837841

  4. Environment-dependent admixture dynamics in a tiger salamander hybrid zone.

    PubMed

    Fitzpatrick, Benjamin M; Shaffer, H Bradley

    2004-06-01

    After an estimated five million years of independent evolution, the barred tiger salamander (Ambystoma tigrinum mavortium) was introduced by bait dealers into the native range of the California tiger salamander (A. californiense). Hybridization and backcrossing have been occurring in central California for 50-60 years, or an estimated 15-30 generations. We studied genetic and ecological factors influencing admixture of these two divergent gene pools by analyzing frequencies of hybrid genotypes in three kinds of breeding habitats: natural vernal pools, ephemeral man-made cattle ponds, and perennial man-made ponds. Perennial ponds tended to have higher frequencies of nonnative alleles than either type of seasonal pond, even in cases where perennial and seasonal ponds are within a few hundred meters. Thus, the hybrid zone has a mosaic structure that depends on pond hydrology or ecology. The presence of some broadly acting constraints on admixture is suggested by linkage disequilibria between physically unlinked molecular markers within ponds. In addition, we found several marker-specific deviations from Hardy-Weinberg equilibrium. One marker showed a consistent deficit of heterozygotes across pond types. Another showed heterozygote deficits only in vernal pools. A third was more likely to have heterozygote excess in ephemeral cattle ponds. These patterns indicate that admixture is influenced by complex genotype-by-environment interactions. PMID:15266977

  5. Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci.

    PubMed

    Chakraborty, R; Weiss, K M

    1988-12-01

    Admixture between genetically different populations may produce gametic association between gene loci as a function of the genetic difference between parental populations and the admixture rate. This association decays as a function of time since admixture and the recombination rate between the loci. Admixture between genetically long-separated human populations has been frequent in the centuries since the age of exploration and colonization, resulting in numerous hybrid descendant populations today, as in the Americas. This represents a natural experiment for genetic epidemiology and anthropology, in which to use polymorphic marker loci (e.g., restriction fragment length polymorphisms) and disequilibrium to infer a genetic basis for traits of interest. In this paper we show that substantial disequilibrium remains today under widely applicable situations, which can be detected without requiring inordinately close linkage between trait and marker loci. Very disparate parental allele frequencies produce large disequilibrium, but the sample size needed to detect such levels of disequilibrium can be large due to the skewed haplotype frequency distribution in the admixed population. Such situations, however, provide power to differentiate between disequilibrium due just to population mixing from that due to physical linkage of loci--i.e., to help map the genetic locus of the trait. A gradient of admixture levels between the same parental populations may be used to test genetic models by relating admixture to disequilibrium levels.

  6. Genetic affinity and admixture of northern Thai people along their migration route in northern Thailand: evidence from autosomal STR loci.

    PubMed

    Kutanan, Wibhu; Kampuansai, Jatupol; Colonna, Vincenza; Nakbunlung, Supaporn; Lertvicha, Pornpilai; Seielstad, Mark; Bertorelle, Giorgio; Kangwanpong, Daoroong

    2011-02-01

    The Khon Mueang (KM) are the largest group of northern Thai people. Our previous mtDNA studies have suggested an admixture process among the KM with the earlier Mon-Khmer-speaking inhabitants of this region. In this study, we evaluate genetic affinities and admixture among 10 KM populations in northern Thailand lying along the historical Yuan migration route, and 10 neighboring populations belonging to 7 additional ethnic groups: Lawa, Mon (Mon-Khmer-speaking groups), Shan, Yuan, Lue, Khuen and Yong (Tai-speaking groups) by analyzing 15 hypervariable autosomal short tandem repeat loci. The KM exhibited close relationships with neighboring populations, especially the Tai-speaking groups, reflecting an admixed origin of the KM. Admixture proportions were observed in all KM populations, which had a higher contribution from the parental Tai than the Mon-Khmer groups. Different admixture patterns of the KM along the migration route might indicate high heterogeneity among the KM. These patterns were not directly associated with geographical proximity, suggesting other factors, like variation in the timing of admixture with the existing populations may have had an important role. More genetic data from different marker systems solely transmitted through the male or female lineages are needed to complete the description of genetic admixture and population history of the KM.

  7. Population admixture: detection by Hardy-Weinberg test and its quantitative effects on linkage-disequilibrium methods for localizing genes underlying complex traits.

    PubMed Central

    Deng, H W; Chen, W M; Recker, R R

    2001-01-01

    In association studies searching for genes underlying complex traits, the results are often inconsistent, and population admixture has been recognized qualitatively as one major potential cause. Hardy-Weinberg equilibrium (HWE) is often employed to test for population admixture; however, its power is generally unknown. Through analytical and simulation approaches, we quantify the power of the HWE test for population admixture and the effects of population admixture on increasing the type I error rate of association studies under various scenarios of population differentiation and admixture. We found that (1) the power of the HWE test for detecting population admixture is usually small; (2) population admixture seriously elevates type I error rate for detecting genes underlying complex traits, the extent of which depends on the degrees of population differentiation and admixture; (3) HWE testing for population admixture should be performed with random samples or only with controls at the candidate genes, or the test can be performed for combined samples of cases and controls at marker loci that are not linked to the disease; (4) testing HWE for population admixture generally reduces false positive association findings of genes underlying complex traits but the effect is small; and (5) with population admixture, a linkage disequilibrium method that employs cases only is more robust and yields many fewer false positive findings than conventional case-control analyses. Therefore, unless random samples are carefully selected from one homogeneous population, admixture is always a legitimate concern for positive findings in association studies except for the analyses that deliberately control population admixture. PMID:11157005

  8. Laboratory experiments investigating entrainment by debris flows and associated increased mobility

    NASA Astrophysics Data System (ADS)

    Moberly, D.; Maki, L.; Hill, K. M.

    2014-12-01

    As debris flows course down a steep hillside they entrain bed materials such as loose sediments. The entrainment of materials not only increases the size of the debris flows but the mobility as well. The mechanics underlying the particle entrainment and the associated increased mobility are not well-understood. Existing models for the entrainment process include those that explicitly consider stress ratios, the angle of inclination, and the particle fluxes relative to those achieved under steady conditions. Others include an explicit consideration of the physics of the granular state: the visco-elastic nature of particle flows and, alternatively, the role of macroscopic force chains. Understanding how well these different approaches account for entrainment and deposition rates is important for accurate debris flow modeling, both in terms of the rate of growth and also in terms of the increased mobility associated with the entrainment. We investigate how total and instantaneous entrainment and deposition vary with macroscopic stresses and particle-scale interactions for different particle sizes and different fluid contents using laboratory experiments in an instrumented experimental laboratory debris flow flume. The flume has separate, independent water supplies for the bed and "supply" (parent debris flow), and the bed is instrumented with pore pressure sensors and a basal stress transducer. We monitor flow velocities, local structure, and instantaneous entrainment and deposition rates using a high speed camera. We have found that systems with a mixture of particle sizes are less erosive and more depositional than systems of one particle size under otherwise the same conditions. For both mixtures and single-sized particle systems, we have observed a relatively linear relationship between total erosion and the slope angle for dry flows. Increasing fluid content typically increases entrainment. Measurements of instantaneous entrainment indicate similar dependencies

  9. Investigation of Pressurized Entrained-Flow Kraft Black Liquor Gasification in an Industrially Relevant Environment

    SciTech Connect

    Kevin Whitty

    2008-06-30

    The University of Utah's project 'Investigation of Pressurized Entrained-Flow Kraft Black Liquor Gasification in an Industrially Relevant Environment' (U.S. DOE Cooperative Agreement DE-FC26-04NT42261) was a response to U.S. DOE/NETL solicitation DE-PS36-04GO94002, 'Biomass Research and Development Initiative' Topical Area 4-Kraft Black Liquor Gasification. The project began September 30, 2004. The objective of the project was to improve the understanding of black liquor conversion in high pressure, high temperature reactors that gasify liquor through partial oxidation with either air or oxygen. The physical and chemical characteristics of both the gas and condensed phase were to be studied over the entire range of liquor conversion, and the rates and mechanisms of processes responsible for converting the liquor to its final smelt and syngas products were to be investigated. This would be accomplished by combining fundamental, lab-scale experiments with measurements taken using a new semi-pilot scale pressurized entrained-flow gasifier. As a result of insufficient availability of funds and changes in priority within the Office of Biomass Programs of the U.S. Department of Energy, the research program was terminated in its second year. In total, only half of the budgeted funding was made available for the program, and most of this was used during the first year for construction of the experimental systems to be used in the program. This had a severe impact on the program. As a consequence, most of the planned research was unable to be performed. Only studies that relied on computational modeling or existing experimental facilities started early enough to deliver useful results by the time to program was terminated Over the course of the program, small scale (approx. 1 ton/day) entrained-flow gasifier was designed and installed at the University of Utah's off-campus Industrial Combustion and Gasification Research Facility. The system is designed to operate at

  10. Entrainment of free troposphere Asian dust/pollution into the marine boundary layer North of Hawai`i during INTEX-B

    NASA Astrophysics Data System (ADS)

    McNaughton, C.; Clarke, A.; Kapustin, V.; Dibb, J.; Anderson, B.; Browell, E.; Carmichael, G.

    2006-12-01

    During NASA's INTEX-B experiment (April, 2006), regional and global chemical transport models (CTM's) successfully predicted two Asian dust/pollution outbreaks. The dusty airmasses were transported from Asia to the Pacific Ocean north of Hawai`i via the free troposphere (FT) and reached locations as far south the Mauna Loa atmospheric observatory. Five research flights using the NASA DC-8 were flown in order to characterize the long-range transport of trace gases and aerosols from Asia and in order to calibrate/validate both CTM predictions and satellite retrievals. In-flight mapping of the dust/pollution layers using the NASA Langley DIAL LIDAR show a sloping, subsiding Asian airmass entraining into the marine boundary layer (MBL). Using in-situ measurements of the aerosol size distribution, chemistry, optical properties and the increase in light scattering as a function of relative humidity [f(RH)], we are able to characterize and discriminate between MBL air, FT Asian dust/pollution and an external mixture of the two airmasses during entrainment. After entrainment aerosols are removed via wet deposition ahead of the trailing low pressure front. The entire episode is put further into context using models, satellite observations and data from the Mauna Loa Observatory. We include a discussion of dust-flux to the ocean surface due to wet-deposition, a potentially important source of iron to the oligotrophic waters of the North Pacific Subtropical Gyre.

  11. Reduced bleed air extraction for DC-10 cabin air conditioning

    NASA Technical Reports Server (NTRS)

    Newman, W. H.; Viele, M. R.; Hrach, F. J.

    1980-01-01

    It is noted that a significant fuel savings can be achieved by reducing bleed air used for cabin air conditioning. Air in the cabin can be recirculated to maintain comfortable ventilation rates but the quality of the air tends to decrease due to entrainment of smoke and odors. Attention is given to a development system designed and fabricated under the NASA Engine Component Improvement Program to define the recirculation limit for the DC-10. It is shown that with the system, a wide range of bleed air reductions and recirculation rates is possible. A goal of 0.8% fuel savings has been achieved which results from a 50% reduction in bleed extraction from the engine.

  12. Evidence of micro-continent entrainment during crustal accretion.

    PubMed

    Pilia, S; Rawlinson, N; Cayley, R A; Bodin, T; Musgrave, R; Reading, A M; Direen, N G; Young, M K

    2015-01-01

    Simple models involving the gradual outboard accretion of material along curvilinear subduction zones are often inconsistent with field-based evidence. A recent study using 3-D geodynamic modelling has shown that the entrainment of an exotic continental fragment within a simple subduction system can result in a complex phase of growth. Although kinematic models based on structural mapping and high-resolution gravity and magnetic maps indicate that the pre-Carboniferous Tasmanides in southeastern Australia may have been subjected to this process, to date there has been little corroboration from crustal scale geophysical imaging. Here, we apply Bayesian transdimensional tomography to ambient noise data recorded by the WOMBAT transportable seismic array to constrain a detailed (20 km resolution in some areas) 3-D shear velocity model of the crust beneath southeast Australia. We find that many of the velocity variations that emerge from our inversion support the recently developed geodynamic and kinematic models. In particular, the full thickness of the exotic continental block, responsible for orocline formation and the tectonic escape of the back arc region, is imaged here for the first time. Our seismic results provide the first direct evidence that exotic continental fragments may profoundly affect the development of an accretionary orogen. PMID:25645934

  13. Dynamic Behavior of Liquids in Annuli Entrained with Gas

    NASA Astrophysics Data System (ADS)

    Gaponenko, Yuri; Mialdun, Alexander; Shevtsova, Valentina

    Heat/mass transfer on the moving gas-liquid interface is an important subject directly related to many industrial applications from crystal growth to cooling of electronic devices. In the case of non-uniform temperature in liquid the overall scenario depends on thermo-capillary convection in liquid which is affected by moving gas along the interface. Space experiment JEREMI (Japanese European Research Experiment on Marangoni Instabilities) is devoted to the study of the threshold of hydrothermal instabilities in two-phase systems. The present study is one of the first steps on the way of the experiment preparation. We report the results of numerical and experimental study of two-phase flows in annulus. The internal column consists of solid supports at the bottom and top, while the central part is a liquid zone filled with viscous liquid and kept in its position by surface tension. Gas enters into the annular duct and entrains initially quiescent liquid. The flow field in liquid is investigated for increasing gas velocity from zero up to 2m/s (correspondingly, Reynolds number in gas varies as 0¡Re¡600). The flow field is analyzed for the different viscosity ratios between liquid and gas. An excellent agreement between computed results and experimental data demonstrates that the developed experimental technique and numerical code are capable to capture the main characteristics of the phenomenon studied.

  14. Changes in music tempo entrain movement related brain activity.

    PubMed

    Daly, Ian; Hallowell, James; Hwang, Faustina; Kirke, Alexis; Malik, Asad; Roesch, Etienne; Weaver, James; Williams, Duncan; Miranda, Eduardo; Nasuto, Slawomir J

    2014-01-01

    The neural mechanisms of music listening and appreciation are not yet completely understood. Based on the apparent relationship between the beats per minute (tempo) of music and the desire to move (for example feet tapping) induced while listening to that music it is hypothesised that musical tempo may evoke movement related activity in the brain. Participants are instructed to listen, without moving, to a large range of musical pieces spanning a range of styles and tempos during an electroencephalogram (EEG) experiment. Event-related desynchronisation (ERD) in the EEG is observed to correlate significantly with the variance of the tempo of the musical stimuli. This suggests that the dynamics of the beat of the music may induce movement related brain activity in the motor cortex. Furthermore, significant correlations are observed between EEG activity in the alpha band over the motor cortex and the bandpower of the music in the same frequency band over time. This relationship is observed to correlate with the strength of the ERD, suggesting entrainment of motor cortical activity relates to increased ERD strength. PMID:25571015

  15. Modelling wind turbine wakes using the turbulent entrainment hypothesis

    NASA Astrophysics Data System (ADS)

    Luzzatto-Fegiz, Paolo

    2015-11-01

    Simple models for turbine wakes have been used extensively in the wind energy community, both as independent tools, as well as to complement more refined and computationally-intensive techniques. Jensen (1983; see also Katić et al. 1986) developed a model assuming that the wake radius grows linearly with distance x, approximating the velocity deficit with a top-hat profile. While this model has been widely implemented in the wind energy community, recently Bastankhah & Porté-Agel (2014) showed that it does not conserve momentum. They proposed a momentum-conserving theory, which assumed a Gaussian velocity deficit and retained the linear-spreading assumption, significantly improving agreement with experiments and LES. While the linear spreading assumption facilitates conceptual modeling, it requires empirical estimates of the spreading rate, and does not readily enable generalizations to other turbine designs. Furthermore, field measurements show sub-linear wake growth with x in the far-wake, consistently with results from fundamental turbulence studies. We develop a model by relying on a simple and general turbulence parameterization, namely the entrainment hypothesis, which has been used extensively in other areas of geophysical fluid dynamics. Without assuming similarity, we derive an analytical solution for a circular turbine wake, which predicts a far-wake radius increasing with x 1 / 3, and is consistent with field measurements and fundamental turbulence studies. Finally, we discuss developments accounting for effects of stratification, as well as generalizations to other turbine designs.

  16. Kinematics of flow and sediment particles at entrainment and deposition

    NASA Astrophysics Data System (ADS)

    Antico, Federica; Sanches, Pedro; Aleixo, Rui; Ferreira, Rui M. L.

    2015-04-01

    A cohesionless granular bed subjected to a turbulent open-channel flow is analysed. The key objective is to clarify the kinematics of entrainment and deposition of individual sediment particles. In particular, we quantify a) the turbulent flow field in the vicinity of particles at the instants of their entrainment and of their deposition; b) the initial particle velocity and the particle velocity immediately before returning to rest. The experimental work was performed at the Hydraulics Laboratory of IST-UL in a 12.5 m long, 0.405 m wide glass-walled flume recirculating water and sediment through independent circuits. The granular bed was a 4.0 m long and 2.5 cm deep reach filled with 5 mm diameter glass beads packed (with some vibration) to a void fraction of 0.356, typical of random packing. Upstream the mobile bed reach the bed was composed of glued particles to ensure the development of a boundary layer with the same roughness. Laboratory tests were run under conditions of weak beadload transport with Shields parameters in the range 0.007 to 0.03. Froude numbers ranged from 0.63 to 0.95 while boundary Reynolds numbers were in the range 130 to 300. It was observed that the bed featured patches of regular arrangements: face centered cubic (fcc) or hexagonal close packing (hcp) blocks alternate with and body centered cubic (bcc) blocks. The resulting bed surface exhibits cleavage lines between blocks and there are spatial variations of bed elevation. The option for artificial sediment allowed for a simplified description of particle positioning at the instant of entrainment. In particular support and pivoting angles are found analytically. Skin friction angles were determind experimentally. The only relevant variables are exposure (defined as the ratio of the actual frontal projection of the exposed area to the area of a circle with 5 mm diameter) and protrusion (defined as the vertical distance between the apex of the particle and the mean local bed elevation

  17. Weather entrainment and multispectral diel activity rhythm of desert hamsters.

    PubMed

    Wan, Xinrong; Zhang, Xinjie; Huo, Yingjun; Wang, Guiming

    2013-10-01

    The circadian rhythm of animals is an adaptation to predictable variation in environmental conditions. Multiple internal oscillators may allow animals to cope with environmental oscillations in different frequencies. Heat stress and dramatic differences between night and day temperatures are the main selective pressures of the diel activity of desert mammals, particularly small-sized rodents. We tested the hypotheses that the diel activities of desert hamsters (Phodopus roborovskii) would be entrained by ambient humidity and temperature. We predicted that increases in night temperature and humidity would improve the propensity to perform activities of the hamster. We observed hourly activities of desert hamsters under semi natural conditions for 24 consecutive hours, with seven replicates in 7 different days. We fit generalized linear mixed models to observed proportions of active hamsters, temperatures, and relative humidity. Observed diel activities of desert hamsters consisted of three harmonic oscillations in the periodicities of 24 h, 12 h, and 6 h, respectively. Furthermore, probabilities to perform activities were positively related to night temperature and humidity. Therefore, the diel activities of desert hamsters are synchronized by atmospheric humidity, temperatures, and environmental cues of ultradian fluctuations.

  18. Evidence of micro-continent entrainment during crustal accretion.

    PubMed

    Pilia, S; Rawlinson, N; Cayley, R A; Bodin, T; Musgrave, R; Reading, A M; Direen, N G; Young, M K

    2015-02-03

    Simple models involving the gradual outboard accretion of material along curvilinear subduction zones are often inconsistent with field-based evidence. A recent study using 3-D geodynamic modelling has shown that the entrainment of an exotic continental fragment within a simple subduction system can result in a complex phase of growth. Although kinematic models based on structural mapping and high-resolution gravity and magnetic maps indicate that the pre-Carboniferous Tasmanides in southeastern Australia may have been subjected to this process, to date there has been little corroboration from crustal scale geophysical imaging. Here, we apply Bayesian transdimensional tomography to ambient noise data recorded by the WOMBAT transportable seismic array to constrain a detailed (20 km resolution in some areas) 3-D shear velocity model of the crust beneath southeast Australia. We find that many of the velocity variations that emerge from our inversion support the recently developed geodynamic and kinematic models. In particular, the full thickness of the exotic continental block, responsible for orocline formation and the tectonic escape of the back arc region, is imaged here for the first time. Our seismic results provide the first direct evidence that exotic continental fragments may profoundly affect the development of an accretionary orogen.

  19. Colour As a Signal for Entraining the Mammalian Circadian Clock

    PubMed Central

    Walmsley, Lauren; Hanna, Lydia; Mouland, Josh; Martial, Franck; West, Alexander; Smedley, Andrew R.; Bechtold, David A.; Webb, Ann R.; Lucas, Robert J.; Brown, Timothy M.

    2015-01-01

    Twilight is characterised by changes in both quantity (“irradiance”) and quality (“colour”) of light. Animals use the variation in irradiance to adjust their internal circadian clocks, aligning their behaviour and physiology with the solar cycle. However, it is currently unknown whether changes in colour also contribute to this entrainment process. Using environmental measurements, we show here that mammalian blue–yellow colour discrimination provides a more reliable method of tracking twilight progression than simply measuring irradiance. We next use electrophysiological recordings to demonstrate that neurons in the mouse suprachiasmatic circadian clock display the cone-dependent spectral opponency required to make use of this information. Thus, our data show that some clock neurons are highly sensitive to changes in spectral composition occurring over twilight and that this input dictates their response to changes in irradiance. Finally, using mice housed under photoperiods with simulated dawn/dusk transitions, we confirm that spectral changes occurring during twilight are required for appropriate circadian alignment under natural conditions. Together, these data reveal a new sensory mechanism for telling time of day that would be available to any mammalian species capable of chromatic vision. PMID:25884537

  20. Food-entrainable circadian oscillators in the brain.

    PubMed

    Verwey, M; Amir, S

    2009-11-01

    Circadian rhythms in mammalian behaviour and physiology rely on daily oscillations in the expression of canonical clock genes. Circadian rhythms in clock gene expression are observed in the master circadian clock, the suprachiasmatic nucleus but are also observed in many other brain regions that have diverse roles, including influences on motivational and emotional state, learning, hormone release and feeding. Increasingly, important links between circadian rhythms and metabolism are being uncovered. In particular, restricted feeding (RF) schedules which limit food availability to a single meal each day lead to the induction and entrainment of circadian rhythms in food-anticipatory activities in rodents. Food-anticipatory activities include increases in core body temperature, activity and hormone release in the hours leading up to the predictable mealtime. Crucially, RF schedules and the accompanying food-anticipatory activities are also associated with shifts in the daily oscillation of clock gene expression in diverse brain areas involved in feeding, energy balance, learning and memory, and motivation. Moreover, lesions of specific brain nuclei can affect the way rats will respond to RF, but have generally failed to eliminate all food-anticipatory activities. As a consequence, it is likely that a distributed neural system underlies the generation and regulation of food-anticipatory activities under RF. Thus, in the future, we would suggest that a more comprehensive approach should be taken, one that investigates the interactions between multiple circadian oscillators in the brain and body, and starts to report on potential neural systems rather than individual and discrete brain areas.

  1. Transcranial electric stimulation entrains cortical neuronal populations in rats

    PubMed Central

    Ozen, Simal; Sirota, Anton; Belluscio, Mariano A.; Anastassiou, Costas A.; Stark, Eran; Koch, Christof; Buzsáki, György

    2010-01-01

    Low intensity electric fields have been suggested to affect the ongoing neuronal activity in vitro and in human studies. However, the physiological mechanism of how weak electrical fields affect and interact with intact brain activity is not well understood. We performed in vivo extracellular and intracellular recordings from the neocortex and hippocampus of anaesthetized rats and extracellular recordings in behaving rats. Electric fields were generated by sinusoid patterns at slow frequency (0.8, 1.25 or 1.7 Hz) via electrodes placed on the surface of the skull or the dura. Transcranial electric stimulation (TES) reliably entrained neurons in widespread cortical areas, including the hippocampus. The percentage of TES phase-locked neurons increased with stimulus intensity and depended on the behavioral state of the animal. TES-induced voltage gradient, as low as 1 mV/mm at the recording sites, was sufficient to phase-bias neuronal spiking. Intracellular recordings showed that both spiking and subthreshold activity were under the combined influence of TES forced fields and network activity. We suggest that TES in chronic preparations may be used for experimental and therapeutic control of brain activity. PMID:20739569

  2. Glucocorticoids entrain molecular clock components in human peripheral cells.

    PubMed

    Cuesta, Marc; Cermakian, Nicolas; Boivin, Diane B

    2015-04-01

    In humans, shift work induces a desynchronization between the circadian system and the outside world, which contributes to shift work-associated medical disorders. Using a simulated night shift experiment, we previously showed that 3 d of bright light at night fully synchronize the central clock to the inverted sleep schedule, whereas the peripheral clocks located in peripheral blood mononuclear cells (PBMCs) took longer to reset. This underlines the need for testing the effects of synchronizers on both the central and peripheral clocks. Glucocorticoids display circadian rhythms controlled by the central clock and are thought to act as synchronizers of rodent peripheral clocks. In the present study, we tested whether the human central and peripheral clocks were sensitive to exogenous glucocorticoids (Cortef) administered in the late afternoon. We showed that 20 mg Cortef taken orally acutely increased PER1 expression in PBMC peripheral clocks. After 6 d of Cortef administration, the phases of central markers were not affected, whereas those of PER2-3 and BMAL1 expression in PBMCs were shifted by ∼ 9.5-11.5 h. These results demonstrate, for the first time, that human peripheral clocks are entrained by glucocorticoids. Importantly, they suggest innovative interventions for shift workers and jet-lag travelers, combining synchronizing agents for the central and peripheral clocks.

  3. Changes in music tempo entrain movement related brain activity.

    PubMed

    Daly, Ian; Hallowell, James; Hwang, Faustina; Kirke, Alexis; Malik, Asad; Roesch, Etienne; Weaver, James; Williams, Duncan; Miranda, Eduardo; Nasuto, Slawomir J

    2014-01-01

    The neural mechanisms of music listening and appreciation are not yet completely understood. Based on the apparent relationship between the beats per minute (tempo) of music and the desire to move (for example feet tapping) induced while listening to that music it is hypothesised that musical tempo may evoke movement related activity in the brain. Participants are instructed to listen, without moving, to a large range of musical pieces spanning a range of styles and tempos during an electroencephalogram (EEG) experiment. Event-related desynchronisation (ERD) in the EEG is observed to correlate significantly with the variance of the tempo of the musical stimuli. This suggests that the dynamics of the beat of the music may induce movement related brain activity in the motor cortex. Furthermore, significant correlations are observed between EEG activity in the alpha band over the motor cortex and the bandpower of the music in the same frequency band over time. This relationship is observed to correlate with the strength of the ERD, suggesting entrainment of motor cortical activity relates to increased ERD strength.

  4. Evidence of micro-continent entrainment during crustal accretion

    PubMed Central

    Pilia, S.; Rawlinson, N.; Cayley, R. A.; Bodin, T.; Musgrave, R.; Reading, A. M.; Direen, N. G.; Young, M. K.

    2015-01-01

    Simple models involving the gradual outboard accretion of material along curvilinear subduction zones are often inconsistent with field-based evidence. A recent study using 3-D geodynamic modelling has shown that the entrainment of an exotic continental fragment within a simple subduction system can result in a complex phase of growth. Although kinematic models based on structural mapping and high-resolution gravity and magnetic maps indicate that the pre-Carboniferous Tasmanides in southeastern Australia may have been subjected to this process, to date there has been little corroboration from crustal scale geophysical imaging. Here, we apply Bayesian transdimensional tomography to ambient noise data recorded by the WOMBAT transportable seismic array to constrain a detailed (20 km resolution in some areas) 3-D shear velocity model of the crust beneath southeast Australia. We find that many of the velocity variations that emerge from our inversion support the recently developed geodynamic and kinematic models. In particular, the full thickness of the exotic continental block, responsible for orocline formation and the tectonic escape of the back arc region, is imaged here for the first time. Our seismic results provide the first direct evidence that exotic continental fragments may profoundly affect the development of an accretionary orogen. PMID:25645934

  5. Colour as a signal for entraining the mammalian circadian clock.

    PubMed

    Walmsley, Lauren; Hanna, Lydia; Mouland, Josh; Martial, Franck; West, Alexander; Smedley, Andrew R; Bechtold, David A; Webb, Ann R; Lucas, Robert J; Brown, Timothy M

    2015-04-01

    Twilight is characterised by changes in both quantity ("irradiance") and quality ("colour") of light. Animals use the variation in irradiance to adjust their internal circadian clocks, aligning their behaviour and physiology with the solar cycle. However, it is currently unknown whether changes in colour also contribute to this entrainment process. Using environmental measurements, we show here that mammalian blue-yellow colour discrimination provides a more reliable method of tracking twilight progression than simply measuring irradiance. We next use electrophysiological recordings to demonstrate that neurons in the mouse suprachiasmatic circadian clock display the cone-dependent spectral opponency required to make use of this information. Thus, our data show that some clock neurons are highly sensitive to changes in spectral composition occurring over twilight and that this input dictates their response to changes in irradiance. Finally, using mice housed under photoperiods with simulated dawn/dusk transitions, we confirm that spectral changes occurring during twilight are required for appropriate circadian alignment under natural conditions. Together, these data reveal a new sensory mechanism for telling time of day that would be available to any mammalian species capable of chromatic vision.

  6. Basal entrainment by Newtonian gravity-driven flows

    NASA Astrophysics Data System (ADS)

    Bates, Belinda M.; Andreini, Nicolas; Ancey, Christophe

    2016-05-01

    Gravity-driven flows can erode the bed along which they descend and increase their mass by a factor of 10 or more. This process is called "basal entrainment." Although documented by field observations and laboratory experiments, it remains poorly understood. This paper examines what happens when a viscous gravity-driven flow generated by releasing a fixed volume of incompressible Newtonian fluid encounters a stationary layer (composed of fluid with the same density and viscosity). Models based on depth-averaged mass and momentum balance equations deal with bed-flow interfaces as shock waves. In contrast, we use an approach involving the long-wave approximation of the Navier-Stokes equations (lubrication theory), and in this context, bed-flow interfaces are acceleration waves that move quickly across thin stationary layers. The incoming flow digs down into the bed, pushing up downstream material, thus advancing the flow front. Extending the method used by Huppert ["The propagation of two-dimensional and axisymmetric viscous gravity currents over a rigid horizontal surface," J. Fluid Mech. 121, 43-58 (1982)] for modeling viscous dam-break waves, we end up with a nonlinear diffusion equation for the flow depth, which is solved numerically. Theory is compared with experimental results. Excellent agreement is found in the limit of low Reynolds numbers (i.e., for flow Reynolds numbers lower than 20) for the front position over time and flow depth profile.

  7. Admixture mapping of end stage kidney disease genetic susceptibility using estimated mutual information ancestry informative markers

    PubMed Central

    2010-01-01

    Background The question of a genetic contribution to the higher prevalence and incidence of end stage kidney disease (ESKD) among African Americans (AA) remained unresolved, until recent findings using admixture mapping pointed to the association of a genomic locus on chromosome 22 with this disease phenotype. In the current study we utilize this example to demonstrate the utility of applying a multi-step admixture mapping approach. Methods A multi-step case only admixture mapping study, consisted of the following steps was designed: 1) Assembly of the sample dataset (ESKD AA); 2) Design of the estimated mutual information ancestry informative markers (n = 2016) screening panel 3); Genotyping the sample set whose size was determined by a power analysis (n = 576) appropriate for the initial screening panel; 4) Inference of local ancestry for each individual and identification of regions with increased AA ancestry using two different ancestry inference statistical approaches; 5) Enrichment of the initial screening panel; 6) Power analysis of the enriched panel 7) Genotyping of additional samples. 8) Re-analysis of the genotyping results to identify a genetic risk locus. Results The initial screening phase yielded a significant peak using the ADMIXMAP ancestry inference program applying case only statistics. Subgroup analysis of 299 ESKD patients with no history of diabetes yielded peaks using both the ANCESTRYMAP and ADMIXMAP ancestry inference programs. The significant peak was found on chromosome 22. Genotyping of additional ancestry informative markers on chromosome 22 that took into account linkage disequilibrium in the ancestral populations, and the addition of samples increased the statistical significance of the finding. Conclusions A multi-step admixture mapping analysis of AA ESKD patients replicated the finding of a candidate risk locus on chromosome 22, contributing to the heightened susceptibility of African Americans to develop non-diabetic ESKD, and

  8. Ancestral proportions and admixture dynamics in geographically defined African Americans living in South Carolina.

    PubMed

    Parra, E J; Kittles, R A; Argyropoulos, G; Pfaff, C L; Hiester, K; Bonilla, C; Sylvester, N; Parrish-Gause, D; Garvey, W T; Jin, L; McKeigue, P M; Kamboh, M I; Ferrell, R E; Pollitzer, W S; Shriver, M D

    2001-01-01

    We analyzed admixture in samples of six different African-American populations from South Carolina: Gullah-speaking Sea Islanders in coastal South Carolina, residents of four counties in the "Low Country" (Berkeley, Charleston, Colleton, and Dorchester), and persons living in the city of Columbia, located in central South Carolina. We used a battery of highly informative autosomal, mtDNA, and Y-chromosome markers. Two of the autosomal markers (FY and AT3) are linked and lie 22 cM apart on chromosome 1. The results of this study indicate, in accordance with previous historical, cultural, and anthropological evidence, a very low level of European admixture in the Gullah Sea Islanders (m = 3.5 +/- 0.9%). The proportion of European admixture is higher in the Low Country (m ranging between 9. 9 +/- 1.8% and 14.0 +/- 1.9%), and is highest in Columbia (m = 17.7 +/- 3.1%). A sex-biased European gene flow and a small Native American contribution to the African-American gene pool are also evident in these data. We studied the pattern of pairwise allelic associations between the FY locus and the nine other autosomal markers in our samples. In the combined sample from the Low Country (N = 548), a high level of linkage disequilibrium was observed between the linked markers, FY and AT3. Additionally, significant associations were also detected between FY and 4 of the 8 unlinked markers, suggesting the existence of significant genetic structure in this population. A continuous gene flow model of admixture could explain the observed pattern of genetic structure. A test conditioning on the overall admixture of each individual showed association of ancestry between the two linked markers (FY and AT3), but not between any of the unlinked markers, as theory predicts. Thus, even in the presence of genetic structure due to continuous gene flow or some other factor, it is possible to differentiate associations due to linkage from spurious associations due to genetic structure.

  9. Aircraft Measurements of Temperature and Liquid Water Content in Entrainment Interface Layer of Stratocumulus Clouds.

    NASA Astrophysics Data System (ADS)

    Haman, K. E.; Gerber, H.; Kumala, W.; Malinowski, S. P.

    2009-09-01

    Entrainment of dry, warm air from above the cloud and its mixing with the colder cloudy air is an important process in dynamics of inversion topped stratocumulus, leading to formation of a transition layer of complex structure - Entrainment Interface Layer (EIL). It consists of mutual filaments if cloudy and clear air of various thickness at different stages of stirring, mixing and homogenization. Borders between these filaments are often very sharp, with temperature jumps of few kelvins and liquid water content (LWC) jumps of up to 0.5 gmE-3 over distance of few centimeters, which cannot be resolved by means of standard aircraft instrumentation. This layer is an area of various specific dynamic and thermodynamic phenomena; in particular it is a source of downdrafts penetrating the cloud as the so called "cloud holes". Small scale structure of EIL has been investigated in 2001 during DYCOMS II campaign in marine stratocumulus over Eastern Pacific, by means of Ultrafast Aircraft Thermometer (UFT-F) from University of Warsaw and PVM-100A LWC-meter from Gerber Scientific, Inc. Some results of this research has been published in 2007 in Quarterly Journal of RMS. UFT-F has a thermoresistive sensing element protected against impact of cloud droplets and response time constant of order 10E-4s. PVM-100A is an optical instrument and has spatial resolution of order 10 cm. For recording a sampling rate of 1kHz has been typically applied with 10 kHz (for UFT-F only) on selected fragments of flights. Unfortunately, for some technical reasons, these two instruments, installed on the NCAR C-130 aircraft, were separated by about 6 meters what limited possibilities and precision of comparing their indications. There were also some failures during the flights due to which many potentially interesting measurements and observations have been lost. Opportunity to get improved observations of EIL appeared in 2008 at POST (Physics of Stratocumulus Top) Project. During POST a number of

  10. Turbulent flow field and air entrainment in laboratory plunging breaking waves

    NASA Astrophysics Data System (ADS)

    Na, Byoungjoon; Chang, Kuang-An; Huang, Zhi-Cheng; Lim, Ho-Joon

    2016-05-01

    This paper presents laboratory measurements of turbulent flow fields and void fraction in deep-water plunging breaking waves using imaging and optical fiber techniques. Bubble-size distributions are also determined based on combined measurements of velocity and bubble residence time. The most excited mode of the local intermittency measure of the turbulent flow and its corresponding length scale are obtained using a wavelet-based method and found to correlate with the swirling strength and vorticity. Concentrated vortical structures with high intermittency are observed near the lower boundaries of the aerated rollers where the velocity shear is high; the length scale of the deduced eddies ranges from 0.05 to 0.15 times the wave height. The number of bubbles with a chord length less than 2 mm demonstrates good correlation with the swirling strength. The power-law scaling and the Hinze scale of the bubbles determined from the bubble chord length distribution compare favorably with existing measurements. The turbulent dissipation rate, accounting for void fraction, is estimated using mixture theory. When void fraction is not considered, the turbulent dissipation rate is underestimated by more than 70% in the initial impinging and the first splash-up roller. A significant discrepancy of approximately 67% between the total energy dissipation rate and the turbulence dissipation rate is found. Of this uncounted dissipation, 23% is caused by bubble-induced dissipation.

  11. Individual Differences in Rhythmic Cortical Entrainment Correlate with Predictive Behavior in Sensorimotor Synchronization

    PubMed Central

    Nozaradan, Sylvie; Peretz, Isabelle; Keller, Peter E.

    2016-01-01

    The current study aims at characterizing the mechanisms that allow humans to entrain the mind and body to incoming rhythmic sensory inputs in real time. We addressed this unresolved issue by examining the relationship between covert neural processes and overt behavior in the context of musical rhythm. We measured temporal prediction abilities, sensorimotor synchronization accuracy and neural entrainment to auditory rhythms as captured using an EEG frequency-tagging approach. Importantly, movement synchronization accuracy with a rhythmic beat could be explained by the amplitude of neural activity selectively locked with the beat period when listening to the rhythmic inputs. Furthermore, stronger endogenous neural entrainment at the beat frequency was associated with superior temporal prediction abilities. Together, these results reveal a direct link between cortical and behavioral measures of rhythmic entrainment, thus providing evidence that frequency-tagged brain activity has functional relevance for beat perception and synchronization. PMID:26847160

  12. Strong effects of network architecture in the entrainment of coupled oscillator systems

    NASA Astrophysics Data System (ADS)

    Kori, Hiroshi; Mikhailov, Alexander S.

    2006-12-01

    Random networks of coupled phase oscillators, representing an approximation for systems of coupled limit-cycle oscillators, are considered. Entrainment of such networks by periodic external forcing applied to a subset of their elements is numerically and analytically investigated. For a large class of interaction functions, we find that the entrainment window with a tongue shape becomes exponentially narrow for networks with higher hierarchical organization. However, the entrainment is significantly facilitated if the networks are directionally biased—i.e., closer to the feedforward networks. Furthermore, we show that the networks with high entrainment ability can be constructed by evolutionary optimization processes. The neural network structure of the master clock of the circadian rhythm in mammals is discussed from the viewpoint of our results.

  13. Laboratory experiments on stability and entrainment of oceanic stratocumulus. Part 1: Instability experiment

    NASA Technical Reports Server (NTRS)

    Shy, Shenqyang S.

    1990-01-01

    The existence and persistence of marine stratocumulus play a significant role in the overall energy budget of the earth. Their stability and entrainment process are important in global climate studies, as well as for local weather forecasting. The purposes of the experimental simulations are to study this process and to address this paradox. The effects of buoyancy reversal is investigated, followed by two types of experiments. An instability experiment involves the behavior of a fully turbulent wake near the inversion generated by a sliding plate. Due to buoyancy reversal, the heavy, mixed fluid starts to sink, turning the potential energy created by the mixing process into kinetic energy, thereby increasing the entrainment rate. An entrainment experiment, using a vertically oscillating grid driven by a controllable speed motor, produces many eddy-induced entrainments at a surface region on scales much less than the depth of the layer.

  14. Individual Differences in Rhythmic Cortical Entrainment Correlate with Predictive Behavior in Sensorimotor Synchronization.

    PubMed

    Nozaradan, Sylvie; Peretz, Isabelle; Keller, Peter E

    2016-01-01

    The current study aims at characterizing the mechanisms that allow humans to entrain the mind and body to incoming rhythmic sensory inputs in real time. We addressed this unresolved issue by examining the relationship between covert neural processes and overt behavior in the context of musical rhythm. We measured temporal prediction abilities, sensorimotor synchronization accuracy and neural entrainment to auditory rhythms as captured using an EEG frequency-tagging approach. Importantly, movement synchronization accuracy with a rhythmic beat could be explained by the amplitude of neural activity selectively locked with the beat period when listening to the rhythmic inputs. Furthermore, stronger endogenous neural entrainment at the beat frequency was associated with superior temporal prediction abilities. Together, these results reveal a direct link between cortical and behavioral measures of rhythmic entrainment, thus providing evidence that frequency-tagged brain activity has functional relevance for beat perception and synchronization. PMID:26847160

  15. Dependence of entrainment in shallow cumulus convection on vertical velocity and distance to cloud edge

    NASA Astrophysics Data System (ADS)

    Tian, Yang; Kuang, Zhiming

    2016-04-01

    The dependence of entrainment rate on environmental conditions and cloud characteristics is investigated using large eddy simulations (LES) of the response of shallow cumulus convection to a small-amplitude temperature perturbation that is horizontally uniform and localized in height. The simulated cumulus fields are analyzed in the framework of an ensemble of entraining plumes by tracking a large number of Lagrangian parcels embedded in the LES and grouping them into different plumes based on their detrainment heights. The results show that fractional entrainment rate per unit height of a plume is inversely proportional to the plume's vertical velocity and its distance to the cloud edge, while changes in environmental stratification and relative humidity, the plume's buoyancy, or the vertical gradient of its buoyancy due to the temperature perturbation have little effect on the plume's entrainment rate.

  16. Speech entrainment enables patients with Broca's aphasia to produce fluent speech.

    PubMed

    Fridriksson, Julius; Hubbard, H Isabel; Hudspeth, Sarah Grace; Holland, Audrey L; Bonilha, Leonardo; Fromm, Davida; Rorden, Chris

    2012-12-01

    A distinguishing feature of Broca's aphasia is non-fluent halting speech typically involving one to three words per utterance. Yet, despite such profound impairments, some patients can mimic audio-visual speech stimuli enabling them to produce fluent speech in real time. We call this effect 'speech entrainment' and reveal its neural mechanism as well as explore its usefulness as a treatment for speech production in Broca's aphasia. In Experiment 1, 13 patients with Broca's aphasia were tested in three conditions: (i) speech entrainment with audio-visual feedback where they attempted to mimic a speaker whose mouth was seen on an iPod screen; (ii) speech entrainment with audio-only feedback where patients mimicked heard speech; and (iii) spontaneous speech where patients spoke freely about assigned topics. The patients produced a greater variety of words using audio-visual feedback compared with audio-only feedback and spontaneous speech. No difference was found between audio-only feedback and spontaneous speech. In Experiment 2, 10 of the 13 patients included in Experiment 1 and 20 control subjects underwent functional magnetic resonance imaging to determine the neural mechanism that supports speech entrainment. Group results with patients and controls revealed greater bilateral cortical activation for speech produced during speech entrainment compared with spontaneous speech at the junction of the anterior insula and Brodmann area 47, in Brodmann area 37, and unilaterally in the left middle temporal gyrus and the dorsal portion of Broca's area. Probabilistic white matter tracts constructed for these regions in the normal subjects revealed a structural network connected via the corpus callosum and ventral fibres through the extreme capsule. Unilateral areas were connected via the arcuate fasciculus. In Experiment 3, all patients included in Experiment 1 participated in a 6-week treatment phase using speech entrainment to improve speech production. Behavioural and

  17. Exploring sleepiness and entrainment on permanent shift schedules in a physiologically based model.

    PubMed

    Postnova, Svetlana; Layden, Andrew; Robinson, Peter A; Phillips, Andrew J K; Abeysuriya, Romesh G

    2012-02-01

    The effects of permanent shift work on entrainment and sleepiness are examined using a mathematical model that combines a model of sleep-wake switch in the brain with a model of the human circadian pacemaker entrained by light and nonphotic inputs. The model is applied to 8-hour permanent shift schedules to understand the basic mechanisms underlying changes of entrainment and sleepiness. Average sleepiness is shown to increase during the first days on the night and evening schedules, that is, shift start times between 0000 to 0700 h and 1500 to 2200 h, respectively. After the initial increase, sleepiness decreases and stabilizes via circadian re-entrainment to the cues provided by the shifts. The increase in sleepiness until entrainment is achieved is strongly correlated with the phase difference between a circadian oscillator entrained to the ambient light and one entrained to the shift schedule. The higher this phase difference, the larger the initial increase in sleepiness. When entrainment is achieved, sleepiness stabilizes and is the same for different shift onsets within the night or evening schedules. The simulations reveal the presence of a critical shift onset around 2300 h that separates schedules, leading to phase advance (night shifts) and phase delay (evening shifts) of the circadian pacemaker. Shifts starting around this time take longest to entrain and are expected to be the worst for long-term sleepiness and well-being of the workers. Surprisingly, we have found that the circadian pacemaker entrains faster to night schedules than to evening ones. This is explained by the longer photoperiod on night schedules compared to evening. In practice, this phenomenon is difficult to see due to days off on which workers switch to free sleep-wake activity. With weekends, the model predicts that entrainment is never achieved on evening and night schedules unless the workers follow the same sleep routine during weekends as during work days. Overall, the model

  18. Neural Entrainment to Rhythmically Presented Auditory, Visual, and Audio-Visual Speech in Children

    PubMed Central

    Power, Alan James; Mead, Natasha; Barnes, Lisa; Goswami, Usha

    2012-01-01

    Auditory cortical oscillations have been proposed to play an important role in speech perception. It is suggested that the brain may take temporal “samples” of information from the speech stream at different rates, phase resetting ongoing oscillations so that they are aligned with similar frequency bands in the input (“phase locking”). Information from these frequency bands is then bound together for speech perception. To date, there are no explorations of neural phase locking and entrainment to speech input in children. However, it is clear from studies of language acquisition that infants use both visual speech information and auditory speech information in learning. In order to study neural entrainment to speech in typically developing children, we use a rhythmic entrainment paradigm (underlying 2 Hz or delta rate) based on repetition of the syllable “ba,” presented in either the auditory modality alone, the visual modality alone, or as auditory-visual speech (via a “talking head”). To ensure attention to the task, children aged 13 years were asked to press a button as fast as possible when the “ba” stimulus violated the rhythm for each stream type. Rhythmic violation depended on delaying the occurrence of a “ba” in the isochronous stream. Neural entrainment was demonstrated for all stream types, and individual differences in standardized measures of language processing were related to auditory entrainment at the theta rate. Further, there was significant modulation of the preferred phase of auditory entrainment in the theta band when visual speech cues were present, indicating cross-modal phase resetting. The rhythmic entrainment paradigm developed here offers a method for exploring individual differences in oscillatory phase locking during development. In particular, a method for assessing neural entrainment and cross-modal phase resetting would be useful for exploring developmental learning difficulties thought to involve temporal

  19. Statistical methods for detecting ichthyoplankton density patterns that influence entrainment mortality

    SciTech Connect

    Paller, M.H.; Tuckfield, R.C.; Starkel, W.M.

    1995-12-31

    Samples of drifting American shad eggs were collected at two transects in the Savannah River near industrial water intakes. At each transect the river was divided into four sectors that were sampled at two hour intervals over a 24 hour period. The actual risk of entrainment was approximately 35-50% lower that if the shad eggs were uniformly distributed, and the risk of entrainment was lower at one intake than the other.

  20. Momentum evolution of ejected and entrained fluid during laminar vortex ring formation

    NASA Astrophysics Data System (ADS)

    Olcay, Ali B.; Krueger, Paul S.

    2010-10-01

    The evolution of total circulation and entrainment of ambient fluid during laminar vortex ring formation has been addressed in a number of previous investigations. Motivated by applications involving propulsion and fluid transport, the present interest is in the momentum evolution of entrained and ejected fluid and momentum exchange among the ejected, entrained fluid and added mass during vortex ring formation. To this end, vortex rings are generated numerically by transient jet ejection for fluid slug length-to-diameter ( L/ D) ratios of 0.5-3.0 using three different velocity programs [trapezoidal, triangular negative slope (NS), and positive slope (PS)] at a jet Reynolds number of 1,000. Lagrangian coherent structures (LCS) were utilized to identify ejected and entrained fluid boundaries, and a Runge-Kutta fourth order scheme was used for advecting these boundaries with the numerical velocity data. By monitoring the center of mass of these fluid boundaries, momentum of each component was calculated and related to the total impulse provided by the vortex ring generator. The results demonstrate that ejected fluid exchanges its momentum mostly with added mass during jet ejection and that the momentum of the entrained fluid at jet termination was < 11% of the total ring impulse in all cases except for the triangular NS case. Following jet termination, momentum exchange was observed between ejected and entrained fluid yielding significant increase in entrained fluid’s momentum. A performance metric was defined relating the impulse from over-pressure developed at the nozzle exit plane during jet ejection to the flow evolution, which increased preferentially with L/ D over the range considered. An additional benefit of this study was the identification of the initial (i.e., before jet initiation) location of the fluid to be entrained into the vortex ring.

  1. Entrainment of riparian gravel and cobbles in an alluvial reach of a regulated canyon river

    USGS Publications Warehouse

    Elliotp, J.G.; Hammack, L.A.

    2000-01-01

    Many canyon rivers have channels and riparian zones composed of alluvial materials and these reaches, dominated by fluvial processes, are sensitive to alterations in streamflow regime. Prior to reservoir construction in the mid-1960s, banks and bars in alluvial reaches of the Gunnison River in the Black Canyon National Monument, Colorado, USA, periodically were reworked and cleared of riparian vegetation by mainstem floods. Recent interest in maintaining near-natural conditions in the Black Canyon using reservoir releases has created a need to estimate sediment-entraining discharges for a variety of geomorphic surfaces composed of sediment ranging in size from gravel to small boulders. Sediment entrainment potential was studied at eight cross-sections in an alluvial reach of the Gunnison River in the Black Canyon in 1994 and 1995. A one-dimensional water-surface profile model was used to estimate water-surface elevations, flow depths, and hydraulic conditions on selected alluvial surfaces for discharges ranging from 57 to 570 m3/s. Onsite observations before and after a flood of 270 m3/s confirmed sediment entrainment on several surfaces inundated by the flood. Selective entrainment of all but the largest particle sizes on the surface occurred at some locations. Physical evidence of sediment entrainment, or absence of sediment entrainment, on inundated surfaces generally was consistent with critical shear stresses estimated with a dimensionless critical shear stress of 0.030. Sediment-entrainment potential over a range of discharges was summarized by the ratio of the local boundary shear stress to the critical shear stress for d50, given hydraulic geometry and sediment-size characteristics. Differing entrainment potential for similar geomorphic surfaces indicates that estimation of minimum streamflow requirements based on sediment mobility is site-specific and that there is no unique streamflow that will initiate movement of d50 at every geomorphically similar

  2. Tremor entrainment by patterned low-frequency stimulation.

    PubMed

    Barnikol, Utako B; Popovych, Oleksandr V; Hauptmann, Christian; Sturm, Volker; Freund, Hans-Joachim; Tass, Peter A

    2008-10-13

    High-frequency test stimulation for tremor suppression is a standard procedure for functional target localization during deep brain stimulation. This method does not work in cases where tremor vanishes intraoperatively, for example, due to general anaesthesia or due to an insertional effect. To overcome this difficulty, we developed a stimulation technique that effectively evokes tremor in a well-defined and quantifiable manner. For this, we used patterned low-frequency stimulation (PLFS), i.e. brief high-frequency pulse trains administered at pulse rates similar to neurons' preferred burst frequency. Unlike periodic single-pulse stimulation, PLFS enables one to convey effective and considerably greater integral charge densities without violation of safety requirements. In a computational investigation of an oscillatory neuronal network temporarily rendered inactive, we found that PLFS evokes synchronized activity, phase locked to the stimulus. While a stronger increase in the amount of synchrony in the neuronal population requires higher stimulus intensities, the portion of synchronously active neurons nevertheless becomes strongly phase locked to PLFS already at weak stimulus intensities. The phase entrainment effect of PLFS turned out to be robust against variations in the stimulation frequency, whereas enhancement of synchrony required precisely tuned stimulation frequencies. We applied PLFS to a patient with spinocerebellar ataxia type 2 (SCA2) with pronounced tremor that disappeared intraoperatively under general anaesthesia. In accordance with our computational results, PLFS evoked tremor, phase locked to the stimulus. In particular, weak PLFS caused low-amplitude, but strongly phase-locked tremor. PLFS test stimulations provided the only functional information about target localization. Optimal target point selection was confirmed by excellent post-operative tremor suppression. PMID:18632457

  3. Study on Turbulent Modeling in Gas Entrainment Evaluation Method

    NASA Astrophysics Data System (ADS)

    Ito, Kei; Ohshima, Hiroyuki; Nakamine, Yoshiaki; Imai, Yasutomo

    Suppression of gas entrainment (GE) phenomena caused by free surface vortices are very important to establish an economically superior design of the sodium-cooled fast reactor in Japan (JSFR). However, due to the non-linearity and/or locality of the GE phenomena, it is not easy to evaluate the occurrences of the GE phenomena accurately. In other words, the onset condition of the GE phenomena in the JSFR is not predicted easily based on scaled-model and/or partial-model experiments. Therefore, the authors are developing a CFD-based evaluation method in which the non-linearity and locality of the GE phenomena can be considered. In the evaluation method, macroscopic vortex parameters, e.g. circulation, are determined by three-dimensional CFD and then, GE-related parameters, e.g. gas core (GC) length, are calculated by using the Burgers vortex model. This procedure is efficient to evaluate the GE phenomena in the JSFR. However, it is well known that the Burgers vortex model tends to overestimate the GC length due to the lack of considerations on some physical mechanisms. Therefore, in this study, the authors develop a turbulent vortex model to evaluate the GE phenomena more accurately. Then, the improved GE evaluation method with the turbulent viscosity model is validated by analyzing the GC lengths observed in a simple experiment. The evaluation results show that the GC lengths analyzed by the improved method are shorter in comparison to the original method, and give better agreement with the experimental data.

  4. A daily palatable meal without food deprivation entrains the suprachiasmatic nucleus of rats.

    PubMed

    Mendoza, Jorge; Angeles-Castellanos, Manuel; Escobar, Carolina

    2005-12-01

    Food is considered a potent Zeitgeber for peripheral oscillators but not for the suprachiasmatic nucleus (SCN), which is entrained principally by the light-dark cycle. However, when food attains relevant properties in quantity and quality, it can be a potent Zeitgeber even for the SCN. Here we evaluated the entrainment influence of a daily palatable meal, without regular food deprivation, on the circadian rhythm of locomotor activity and the c-Fos and PER-1 protein expression in the SCN. Rats fed ad libitum, in constant darkness, received a palatable meal for 6 weeks starting in the middle of the subjective day. Locomotor activity showed entrainment when the offset of activity coincided with the palatable meal-time. In the SCN, the peak expression of c-Fos was observed at palatable meal-time and PER-1 showed a peak during the onset of subjective night, as predicted according to the behavioural entrained pattern. In addition, c-Fos and PER-1 expression in the paraventricular thalamic nucleus (PVT) showed increased expression at palatable meal-time, while the intergeniculate leaflet did not, suggesting that the PVT may be involved as an input pathway of palatable food-entrainment to the SCN. These results demonstrate that daily access to a palatable meal can entrain the SCN; several stimuli can be implicated in this process, including motivation and arousal.

  5. Are non-human primates capable of rhythmic entrainment? Evidence for the gradual audiomotor evolution hypothesis

    PubMed Central

    Merchant, Hugo; Honing, Henkjan

    2014-01-01

    We propose a decomposition of the neurocognitive mechanisms that might underlie interval-based timing and rhythmic entrainment. Next to reviewing the concepts central to the definition of rhythmic entrainment, we discuss recent studies that suggest rhythmic entrainment to be specific to humans and a selected group of bird species, but, surprisingly, is not obvious in non-human primates. On the basis of these studies we propose the gradual audiomotor evolution hypothesis that suggests that humans fully share interval-based timing with other primates, but only partially share the ability of rhythmic entrainment (or beat-based timing). This hypothesis accommodates the fact that non-human primates (i.e., macaques) performance is comparable to humans in single interval tasks (such as interval reproduction, categorization, and interception), but show differences in multiple interval tasks (such as rhythmic entrainment, synchronization, and continuation). Furthermore, it is in line with the observation that macaques can, apparently, synchronize in the visual domain, but show less sensitivity in the auditory domain. And finally, while macaques are sensitive to interval-based timing and rhythmic grouping, the absence of a strong coupling between the auditory and motor system of non-human primates might be the reason why macaques cannot rhythmically entrain in the way humans do. PMID:24478618

  6. Are non-human primates capable of rhythmic entrainment? Evidence for the gradual audiomotor evolution hypothesis.

    PubMed

    Merchant, Hugo; Honing, Henkjan

    2013-01-01

    We propose a decomposition of the neurocognitive mechanisms that might underlie interval-based timing and rhythmic entrainment. Next to reviewing the concepts central to the definition of rhythmic entrainment, we discuss recent studies that suggest rhythmic entrainment to be specific to humans and a selected group of bird species, but, surprisingly, is not obvious in non-human primates. On the basis of these studies we propose the gradual audiomotor evolution hypothesis that suggests that humans fully share interval-based timing with other primates, but only partially share the ability of rhythmic entrainment (or beat-based timing). This hypothesis accommodates the fact that non-human primates (i.e., macaques) performance is comparable to humans in single interval tasks (such as interval reproduction, categorization, and interception), but show differences in multiple interval tasks (such as rhythmic entrainment, synchronization, and continuation). Furthermore, it is in line with the observation that macaques can, apparently, synchronize in the visual domain, but show less sensitivity in the auditory domain. And finally, while macaques are sensitive to interval-based timing and rhythmic grouping, the absence of a strong coupling between the auditory and motor system of non-human primates might be the reason why macaques cannot rhythmically entrain in the way humans do. PMID:24478618

  7. Global and local oscillatory entrainment of visual behavior across retinotopic space.

    PubMed

    Sokoliuk, Rodika; VanRullen, Rufin

    2016-01-01

    Ongoing brain oscillations (7-10 Hz) modulate visual perception; in particular, their precise phase can predict target perception. Here, we employ this phase-dependence of perception in a psychophysical experiment to track spatial properties of entrained oscillations of visual perception across the visual field. Is this entrainment local, or a more global phenomenon? If the latter, does oscillatory phase synchronize over space, or vary with increasing distance from the oscillatory source? We presented a disc stimulus in the upper left quadrant, oscillating in luminance at different frequencies (individual alpha frequency (IAF), 5 Hz, and 15 Hz) to entrain an oscillation with specific frequency and spatial origin. Observers fixated centrally, while flash stimuli at perceptual threshold appeared at different positions and times with respect to the oscillating stimulus. IAF and 5 Hz luminance oscillations modulated detection performance at all tested positions, whereas at 15 Hz, the effect was weaker and less consistent. Furthermore, for IAF and 5 Hz entrainment, preferred phases for target detection differed significantly between spatial locations, suggesting "local" entrainment of detection performance next to the oscillatory source, whereas more distant target locations shared a "global" effect with a significantly different phase. This unexpected global component of entrainment is tentatively attributed to widespread connectivity from thalamic nuclei such as the pulvinar. PMID:27126642

  8. Global and local oscillatory entrainment of visual behavior across retinotopic space

    PubMed Central

    Sokoliuk, Rodika; VanRullen, Rufin

    2016-01-01

    Ongoing brain oscillations (7–10 Hz) modulate visual perception; in particular, their precise phase can predict target perception. Here, we employ this phase-dependence of perception in a psychophysical experiment to track spatial properties of entrained oscillations of visual perception across the visual field. Is this entrainment local, or a more global phenomenon? If the latter, does oscillatory phase synchronize over space, or vary with increasing distance from the oscillatory source? We presented a disc stimulus in the upper left quadrant, oscillating in luminance at different frequencies (individual alpha frequency (IAF), 5 Hz, and 15 Hz) to entrain an oscillation with specific frequency and spatial origin. Observers fixated centrally, while flash stimuli at perceptual threshold appeared at different positions and times with respect to the oscillating stimulus. IAF and 5 Hz luminance oscillations modulated detection performance at all tested positions, whereas at 15 Hz, the effect was weaker and less consistent. Furthermore, for IAF and 5 Hz entrainment, preferred phases for target detection differed significantly between spatial locations, suggesting “local” entrainment of detection performance next to the oscillatory source, whereas more distant target locations shared a “global” effect with a significantly different phase. This unexpected global component of entrainment is tentatively attributed to widespread connectivity from thalamic nuclei such as the pulvinar. PMID:27126642

  9. Are non-human primates capable of rhythmic entrainment? Evidence for the gradual audiomotor evolution hypothesis.

    PubMed

    Merchant, Hugo; Honing, Henkjan

    2013-01-01

    We propose a decomposition of the neurocognitive mechanisms that might underlie interval-based timing and rhythmic entrainment. Next to reviewing the concepts central to the definition of rhythmic entrainment, we discuss recent studies that suggest rhythmic entrainment to be specific to humans and a selected group of bird species, but, surprisingly, is not obvious in non-human primates. On the basis of these studies we propose the gradual audiomotor evolution hypothesis that suggests that humans fully share interval-based timing with other primates, but only partially share the ability of rhythmic entrainment (or beat-based timing). This hypothesis accommodates the fact that non-human primates (i.e., macaques) performance is comparable to humans in single interval tasks (such as interval reproduction, categorization, and interception), but show differences in multiple interval tasks (such as rhythmic entrainment, synchronization, and continuation). Furthermore, it is in line with the observation that macaques can, apparently, synchronize in the visual domain, but show less sensitivity in the auditory domain. And finally, while macaques are sensitive to interval-based timing and rhythmic grouping, the absence of a strong coupling between the auditory and motor system of non-human primates might be the reason why macaques cannot rhythmically entrain in the way humans do.

  10. Correlation for liquid entrainment in annular two-phase flow of viscous fluid

    SciTech Connect

    Ishii, Mamoru; Mishima, Kaichiro

    1981-03-01

    The droplet entrainment from a liquid film by gas flow is important to mass, momentum, and energy transfer in annular two-phase flow. The amount of entrainment can significantly affect occurrences of the dryout and post-dryout heat flux as well as the rewetting phenomena of a hot dry surface. In view of these, a correlation for the amount of entrained liquid in annular flow has been developed from a simple model and experimental data. There are basically two different regions of entrainment, namely, the entrance and quasiequilibrium regions. The correlation for the equilibrium region is expressed in terms of the dimensionless gas flux, diameter, and total liquid Reynolds number. The entrance effect is taken into account by an exponential relaxation function. It has been shown that this new model can satisfactorily correlate wide ranges of experimental data for water. Furthermore, the necessary distance for the development of entrainment is identified. These correlations, therefore, can supply accurate information on entrainment which have not been available previously. (author)

  11. The role of the endocrine system in feeding-induced tissue-specific circadian entrainment.

    PubMed

    Sato, Miho; Murakami, Mariko; Node, Koichi; Matsumura, Ritsuko; Akashi, Makoto

    2014-07-24

    The circadian clock is entrained to environmental cycles by external cue-mediated phase adjustment. Although the light input pathway has been well defined, the mechanism of feeding-induced phase resetting remains unclear. The tissue-specific sensitivity of peripheral entrainment to feeding suggests the involvement of multiple pathways, including humoral and neuronal signals. Previous in vitro studies with cultured cells indicate that endocrine factors may function as entrainment cues for peripheral clocks. However, blood-borne factors that are well characterized in actual feeding-induced resetting have yet to be identified. Here, we report that insulin may be involved in feeding-induced tissue-type-dependent entrainment in vivo. In ex vivo culture experiments, insulin-induced phase shift in peripheral clocks was dependent on tissue type, which was consistent with tissue-specific insulin sensitivity, and peripheral entrainment in insulin-sensitive tissues involved PI3K- and MAPK-mediated signaling pathways. These results suggest that insulin may be an immediate early factor in feeding-mediated tissue-specific entrainment.

  12. Direct entrainment and detrainment rate distributions of individual shallow cumulus clouds in an LES

    NASA Astrophysics Data System (ADS)

    Dawe, J. T.; Austin, P. H.

    2013-02-01

    Probability distribution functions of shallow cumulus cloud core entrainment and detrainment rates are calculated using 4362 individual cumulus clouds isolated from LES using a cloud tracking algorithm. Calculation of the mutual information between fractional entrainment/detrainment and a variety of mean cloud core properties suggests that fractional entrainment rate is best predicted by the mean cloud buoyancy B and the environmental buoyancy lapse rate dθρdz at that level, while fractional detrainment is best predicted by the mean vertical velocity w and the critical mixing fraction χc. Fractional entrainment and detrainment rates are relatively insensitive to cloud core horizontal area, and the circumference of horizontal cloud core sections display an a0.69 dependence. This implies that cloud core mass entrainment flux E is proportional to cloud core cross-sectional area instead of cloud core surface area, as is generally assumed. Empirical best-fit relations for ε(B, dθρdz and δ(w, χc) are found for both individual shallow cumulus clouds and cloud ensembles. It is found that clouds with high buoyancy in strong stratification experience low entrainment rates, while clouds with high vertical velocities and critical mixing fractions experience low detrainment rates.

  13. Direct entrainment and detrainment rate distributions of individual shallow cumulus clouds in an LES

    NASA Astrophysics Data System (ADS)

    Dawe, J. T.; Austin, P. H.

    2013-08-01

    Probability distribution functions of shallow cumulus cloud core entrainment and detrainment rates are calculated using 4362 individual cumulus clouds isolated from LES (large eddy simulation) using a cloud tracking algorithm. Calculation of the mutual information between fractional entrainment/detrainment and a variety of mean cloud core properties suggests that fractional entrainment rate is best predicted by the mean cloud buoyancy B and the environmental buoyancy lapse rate dθρ/dz at that level, while fractional detrainment is best predicted by the mean vertical velocity w and the critical mixing fraction χc. Fractional entrainment and detrainment rates are relatively insensitive to cloud core horizontal area, and the perimeter of horizontal cloud core sections display an a0.73 dependence. This implies that cloud core mass entrainment flux E is proportional to cloud core cross-sectional area instead of cloud core surface area, as is generally assumed. Empirical best-fit relations for ɛ(B, dθρ/dz and δ(w, χc) are found for both individual shallow cumulus clouds and cloud ensembles. It is found that clouds with high buoyancy in strong stratification experience low entrainment rates, while clouds with high vertical velocities and critical mixing fractions experience low detrainment rates.

  14. Sub-layers inside the entrainment zone of a dry, shear-free convective boundary layer

    NASA Astrophysics Data System (ADS)

    Garcia, Jade Rachele; Mellado, Juan Pedro

    2013-11-01

    The entrainment zone of a dry, shear-free convective boundary layer growing into a homogeneously stably-stratified fluid is studied using direct numerical simulation. Based on the self-similar analysis of the mean and variance buoyancy profiles, we identify two sub-layers within the entrainment zone, defined as the region of negative buoyancy flux: i) an upper sub-layer with a thickness comparable to the penetrative length scale based on the convective velocity and the buoyancy frequency of the free troposphere and ii) a lower sub-layer acting as a transition towards the mixed layer, with a thickness equal to a constant fraction of the boundary layer height. The capping region of the penetrative thermals belongs to the upper sub-layer of the entrainment zone, and the troughs between the penetrating thermals belong to the lower sub-layer of the entrainment zone. Correspondingly, different buoyancy scales are identified in the different regions; parametrizations thereof are provided and explained. This multiplicity of characteristic scales inside the entrainment zone helps to explain the uncertainty associated with previous analysis of entrainment zone properties and the difficulty to parametrize them based on a single length scale and a single buoyancy scale. Juelich Research Centre for the computing time.

  15. Mathematical modeling of slope flows with entrainment as flows of non-Newtonian fluids

    NASA Astrophysics Data System (ADS)

    Zayko, Julia; Eglit, Margarita

    2015-04-01

    Non-Newtonian fluids in which the shear stresses are nonlinear functions of the shear strain rates are used to model slope flows such as snow avalanches, mudflows, debris flows. The entrainment of bottom material is included into the model basing on the assumption that in entraining flows the bed friction is equal to the shear stress of the bottom material (Issler et al, 2011). Unsteady motion down long homogeneous slopes with constant inclines is studied numerically for different flow rheologies and different slope angles. Variation of the velocity profile, increase of the flow depth and velocity due to entrainment as well as the value of the entrainment rate is calculated. Asymptotic formulae for the entrainment rate are derived for unsteady flows of different rheological properties. REFERENCES Chowdhury M., Testik F., 2011. Laboratory testing of mathematical models for high-concentration fluid mud turbidity currents. Ocean Engineering 38, 256-270. Eglit, M.E., Demidov, K.S., 2005. Mathematical modeling of snow entrainment in avalanche motion. Cold Reg. Sci. Technol. 43 (1-2), 10-23. Eglit M. E., Yakubenko A. E., 2012, Mathematical Modeling of slope flows entraining bottom material. Eglit M. E., Yakubenko A. E., 2014, Numerical modeling of slope flows entraining bottom material. Cold Reg. Sci. Technol. 108, 139-148. Issler D, M. Pastor Peréz. 2011. Interplay of entrainment and rheology in snow avalanches; a numerical study. Annals of Glaciology, 52(58), pp.143-147 Kern M. A., Tiefenbacher F., McElwaine J., N., 2004. The rheology of snow in large chute flows. Cold Regions Science and Technology, 39, 181 -192. Naaim, M., Faug, T., Naaim-Bouvet, F., 2003. Dry granular flow modelling including erosion and deposition. Surv. Geophys. 24, 569-585. Naaim, M., Naaim-Bouvet, F., Faug, T., Bouchet, A., 2004. Dense snow avalanche modeling: flow, erosion, deposition and obstacle effects. Cold Reg. Sci. Technol. 39, 193-204. Rougier, J & Kern, M 2010, 'Predicting snow

  16. Doing Duo – a case study of entrainment in William Forsythe’s choreography “Duo”

    PubMed Central

    Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E.

    2014-01-01

    Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe’s choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models. PMID:25374522

  17. Genome-wide Scan of 29,141 African Americans Finds No Evidence of Directional Selection since Admixture

    PubMed Central

    Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C.; Ambrosone, Christine B.; Amos, Christopher; Bandera, Elisa V.; Berndt, Sonja I.; Bernstein, Leslie; Blot, William J.; Bock, Cathryn H.; Caporaso, Neil; Casey, Graham; Deming, Sandra L.; Diver, W. Ryan; Gapstur, Susan M.; Gillanders, Elizabeth M.; Harris, Curtis C.; Henderson, Brian E.; Ingles, Sue A.; Isaacs, William; De Jager, Phillip L.; John, Esther M.; Kittles, Rick A.; Larkin, Emma; McNeill, Lorna H.; Millikan, Robert C.; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F.; Rodriguez-Gil, Jorge L.; Rybicki, Benjamin A.; Schwartz, Ann G.; Signorello, Lisa B.; Spitz, Margaret; Strom, Sara S.; Tucker, Margaret A.; Wiencke, John K.; Witte, John S.; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A.; Zheng, Wei; Ziegler, Regina G.; Chanock, Stephen J.; Haiman, Christopher A.; Reich, David; Price, Alkes L.

    2014-01-01

    The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study’s conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas. PMID:25242497

  18. Admixture patterns and genetic differentiation in negrito groups from West Malaysia estimated from genome-wide SNP data.

    PubMed

    Jinam, Timothy A; Phipps, Maude E; Saitou, Naruya

    2013-01-01

    Southeast Asia houses various culturally and linguistically diverse ethnic groups. In Malaysia, where the Malay, Chinese, and Indian ethnic groups form the majority, there exist minority groups such as the "negritos" who are believed to be descendants of the earliest settlers of Southeast Asia. Here we report patterns of genetic substructure and admixture in two Malaysian negrito populations (Jehai and Kensiu), using ~50,000 genome-wide single-nucleotide polymorphism (SNP) data. We found traces of recent admixture in both the negrito populations, particularly in the Jehai, with the Malay through principal component analysis and STRUCTURE analysis software, which suggested that the admixture was as recent as one generation ago. We also identified significantly differentiated nonsynonymous SNPs and haplotype blocks related to intracellular transport, metabolic processes, and detection of stimulus. These results highlight the different levels of admixture experienced by the two Malaysian negritos. Delineating admixture and differentiated genomic regions should be of importance in designing and interpretation of molecular anthropology and disease association studies. PMID:24297225

  19. Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture.

    PubMed

    Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C; Ambrosone, Christine B; Amos, Christopher; Bandera, Elisa V; Berndt, Sonja I; Bernstein, Leslie; Blot, William J; Bock, Cathryn H; Caporaso, Neil; Casey, Graham; Deming, Sandra L; Diver, W Ryan; Gapstur, Susan M; Gillanders, Elizabeth M; Harris, Curtis C; Henderson, Brian E; Ingles, Sue A; Isaacs, William; De Jager, Phillip L; John, Esther M; Kittles, Rick A; Larkin, Emma; McNeill, Lorna H; Millikan, Robert C; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F; Rodriguez-Gil, Jorge L; Rybicki, Benjamin A; Schwartz, Ann G; Signorello, Lisa B; Spitz, Margaret; Strom, Sara S; Tucker, Margaret A; Wiencke, John K; Witte, John S; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A; Zheng, Wei; Ziegler, Regina G; Chanock, Stephen J; Haiman, Christopher A; Reich, David; Price, Alkes L

    2014-10-01

    The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study's conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas.

  20. Genome-wide detection of natural selection in African Americans pre- and post-admixture

    PubMed Central

    Jin, Wenfei; Xu, Shuhua; Wang, Haifeng; Yu, Yongguo; Shen, Yiping; Wu, Bailin; Jin, Li

    2012-01-01

    It is particularly meaningful to investigate natural selection in African Americans (AfA) due to the high mortality their African ancestry has experienced in history. In this study, we examined 491,526 autosomal single nucleotide polymorphisms (SNPs) genotyped in 5210 individuals and conducted a genome-wide search for selection signals in 1890 AfA. Several genomic regions showing an excess of African or European ancestry, which were considered the footprints of selection since population admixture, were detected based on a commonly used approach. However, we also developed a new strategy to detect natural selection both pre- and post-admixture by reconstructing an ancestral African population (AAF) from inferred African components of ancestry in AfA and comparing it with indigenous African populations (IAF). Interestingly, many selection-candidate genes identified by the new approach were associated with AfA-specific high-risk diseases such as prostate cancer and hypertension, suggesting an important role these disease-related genes might have played in adapting to a new environment. CD36 and HBB, whose mutations confer a degree of protection against malaria, were also located in the highly differentiated regions between AAF and IAF. Further analysis showed that the frequencies of alleles protecting against malaria in AAF were lower than those in IAF, which is consistent with the relaxed selection pressure of malaria in the New World. There is no overlap between the top candidate genes detected by the two approaches, indicating the different environmental pressures AfA experienced pre- and post-population admixture. We suggest that the new approach is reasonably powerful and can also be applied to other admixed populations such as Latinos and Uyghurs. PMID:22128132

  1. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

    PubMed

    Miller, Webb; Schuster, Stephan C; Welch, Andreanna J; Ratan, Aakrosh; Bedoya-Reina, Oscar C; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C; Drautz, Daniela I; Wittekindt, Nicola E; Tomsho, Lynn P; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K; Rode, Karyn; Obbard, Martyn; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Olafur; Aars, Jon; Mailund, Thomas; Wiig, Oystein; Talbot, Sandra L; Lindqvist, Charlotte

    2012-09-01

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5-10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture. We also provide paleodemographic estimates that suggest bear evolution has tracked key climate events, and that PB in particular experienced a prolonged and dramatic decline in its effective population size during the last ca. 500,000 years. We demonstrate that brown bears and PBs have had sufficiently independent evolutionary histories over the last 4-5 million years to leave imprints in the PB nuclear genome that likely are associated with ecological adaptation to the Arctic environment. PMID:22826254

  2. Genome-wide detection of natural selection in African Americans pre- and post-admixture.

    PubMed

    Jin, Wenfei; Xu, Shuhua; Wang, Haifeng; Yu, Yongguo; Shen, Yiping; Wu, Bailin; Jin, Li

    2012-03-01

    It is particularly meaningful to investigate natural selection in African Americans (AfA) due to the high mortality their African ancestry has experienced in history. In this study, we examined 491,526 autosomal single nucleotide polymorphisms (SNPs) genotyped in 5210 individuals and conducted a genome-wide search for selection signals in 1890 AfA. Several genomic regions showing an excess of African or European ancestry, which were considered the footprints of selection since population admixture, were detected based on a commonly used approach. However, we also developed a new strategy to detect natural selection both pre- and post-admixture by reconstructing an ancestral African population (AAF) from inferred African components of ancestry in AfA and comparing it with indigenous African populations (IAF). Interestingly, many selection-candidate genes identified by the new approach were associated with AfA-specific high-risk diseases such as prostate cancer and hypertension, suggesting an important role these disease-related genes might have played in adapting to a new environment. CD36 and HBB, whose mutations confer a degree of protection against malaria, were also located in the highly differentiated regions between AAF and IAF. Further analysis showed that the frequencies of alleles protecting against malaria in AAF were lower than those in IAF, which is consistent with the relaxed selection pressure of malaria in the New World. There is no overlap between the top candidate genes detected by the two approaches, indicating the different environmental pressures AfA experienced pre- and post-population admixture. We suggest that the new approach is reasonably powerful and can also be applied to other admixed populations such as Latinos and Uyghurs.

  3. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

    USGS Publications Warehouse

    Miller, Webb; Schuster, Stephan C.; Welch, Andreanna J.; Ratan, Aakrosh; Bedoya-Reina, Oscar C.; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C.; Drautz, Daniela I.; Wittekindt, Nicola E.; Tomsho, Lynn P.; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K.; Rode, Karyn; Obbard, Martyn E.; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Ólafur; Aars, Jon; Mailund, Thomas; Wiig, Øystein; Talbot, Sandra L.; Lindqvist, Charlotte

    2012-01-01

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5–10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture. We also provide paleodemographic estimates that suggest bear evolution has tracked key climate events, and that PB in particular experienced a prolonged and dramatic decline in its effective population size during the last ca. 500,000 years. We demonstrate that brown bears and PBs have had sufficiently independent evolutionary histories over the last 4–5 million years to leave imprints in the PB nuclear genome that likely are associated with ecological adaptation to the Arctic environment.

  4. A Genomewide Single-Nucleotide–Polymorphism Panel for Mexican American Admixture Mapping

    PubMed Central

    Tian, Chao ; Hinds, David A. ; Shigeta, Russell ; Adler, Sharon G. ; Lee, Annette ; Pahl, Madeleine V. ; Silva, Gabriel ; Belmont, John W. ; Hanson, Robert L. ; Knowler, William C. ; Gregersen, Peter K. ; Ballinger, Dennis G. ; Seldin, Michael F. 

    2007-01-01

    For admixture mapping studies in Mexican Americans (MAM), we define a genomewide single-nucleotide–polymorphism (SNP) panel that can distinguish between chromosomal segments of Amerindian (AMI) or European (EUR) ancestry. These studies used genotypes for >400,000 SNPs, defined in EUR and both Pima and Mayan AMI, to define a set of ancestry-informative markers (AIMs). The use of two AMI populations was necessary to remove a subset of SNPs that distinguished genotypes of only one AMI subgroup from EUR genotypes. The AIMs set contained 8,144 SNPs separated by a minimum of 50 kb with only three intermarker intervals >1 Mb and had EUR/AMI FST values >0.30 (mean FST=0.48) and Mayan/Pima FST values <0.05 (mean FST<0.01). Analysis of a subset of these SNP AIMs suggested that this panel may also distinguish ancestry between EUR and other disparate AMI groups, including Quechuan from South America. We show, using realistic simulation parameters that are based on our analyses of MAM genotyping results, that this panel of SNP AIMs provides good power for detecting disease-associated chromosomal segments for genes with modest ethnicity risk ratios. A reduced set of 5,287 SNP AIMs captured almost the same admixture mapping information, but smaller SNP sets showed substantial drop-off in admixture mapping information and power. The results will enable studies of type 2 diabetes, rheumatoid arthritis, and other diseases among which epidemiological studies suggest differences in the distribution of ancestry-associated susceptibility. PMID:17557415

  5. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

    PubMed

    Miller, Webb; Schuster, Stephan C; Welch, Andreanna J; Ratan, Aakrosh; Bedoya-Reina, Oscar C; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C; Drautz, Daniela I; Wittekindt, Nicola E; Tomsho, Lynn P; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K; Rode, Karyn; Obbard, Martyn; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Olafur; Aars, Jon; Mailund, Thomas; Wiig, Oystein; Talbot, Sandra L; Lindqvist, Charlotte

    2012-09-01

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5-10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture