Science.gov

Sample records for air entrainment admixtures

  1. Investigation of Proprietary Air-Entraining Admixtures to Produce Frost- Resistant Concrete with Low Air Content

    DTIC Science & Technology

    1992-03-01

    given air content, a higher specific surface should result in a smaller spacing factor ( Mindess and Young 1981). Therefore, if a particular AEA produced...MS. Mindess , S., and Young, J. F. 1981. Concrete, Prentice-Hall, Englewood Cliffs, NJ. Powers, T. C. 1954 (May). "Void Spacing as a Basis for

  2. Air entrainment in hairy surfaces

    NASA Astrophysics Data System (ADS)

    Nasto, Alice; Regli, Marianne; Brun, P.-T.; Alvarado, José; Clanet, Christophe; Hosoi, A. E.

    2016-07-01

    Motivated by diving semiaquatic mammals, we investigate the mechanism of dynamic air entrainment in hairy surfaces submerged in liquid. Hairy surfaces are cast out of polydimethylsiloxane elastomer and plunged into a fluid bath at different velocities. Experimentally, we find that the amount of air entrained is greater than what is expected for smooth surfaces. Theoretically, we show that the hairy surface can be considered as a porous medium and we describe the air entrainment via a competition between the hydrostatic forcing and the viscous resistance in the pores. A phase diagram that includes data from our experiments and biological data from diving semiaquatic mammals is included to place the model system in a biological context and predict the regime for which the animal is protected by a plastron of air.

  3. Response of entrained air-void systems in cement paste to pressure

    NASA Astrophysics Data System (ADS)

    Frazier, Robert

    2011-12-01

    Scope and Method of Study: Determine the response of entrained air-void systems in fresh cement paste to applied pressures by utilizing micro-computed tomography. Compare results to those suggested by the ASTM C231 Type B pressure meter calibration equations. Findings and Conclusions: The results of this research suggest that although the Type B pressure meter assumptions are valid for the compression of individual voids, the volume of air-voids which dissolve under pressure is significant enough to register noticeable errors when using a synthetic air-entraining admixture with the Type B pressure meter test. Results currently suggest that air-void systems with a significant percentage of small voids present will have higher deviation from the Boyle's Law model used by the Type B pressure meter due to the dissolution of these air-voids.

  4. Entrainment Rate in Shallow Cumuli: Dependence on Entrained Dry Air Sources and Probability Density Functions

    NASA Astrophysics Data System (ADS)

    Lu, C.; Liu, Y.; Niu, S.; Vogelmann, A. M.

    2012-12-01

    In situ aircraft cumulus observations from the RACORO field campaign are used to estimate entrainment rate for individual clouds using a recently developed mixing fraction approach. The entrainment rate is computed based on the observed state of the cloud core and the state of the air that is laterally mixed into the cloud at its edge. The computed entrainment rate decreases when the air is entrained from increasing distance from the cloud core edge; this is because the air farther away from cloud edge is drier than the neighboring air that is within the humid shells around cumulus clouds. Probability density functions of entrainment rate are well fitted by lognormal distributions at different heights above cloud base for different dry air sources (i.e., different source distances from the cloud core edge). Such lognormal distribution functions are appropriate for inclusion into future entrainment rate parameterization in large scale models. To the authors' knowledge, this is the first time that probability density functions of entrainment rate have been obtained in shallow cumulus clouds based on in situ observations. The reason for the wide spread of entrainment rate is that the observed clouds are affected by entrainment mixing processes to different extents, which is verified by the relationships between the entrainment rate and cloud microphysics/dynamics. The entrainment rate is negatively correlated with liquid water content and cloud droplet number concentration due to the dilution and evaporation in entrainment mixing processes. The entrainment rate is positively correlated with relative dispersion (i.e., ratio of standard deviation to mean value) of liquid water content and droplet size distributions, consistent with the theoretical expectation that entrainment mixing processes are responsible for microphysics fluctuations and spectral broadening. The entrainment rate is negatively correlated with vertical velocity and dissipation rate because entrainment

  5. Dry Air Entrainment into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovec, Gary J.; Atkinson, Robert J.; Hood, Robbie E.; LaFontaine, Frank J.

    2000-01-01

    Hurricane Earl formed in the Gulf of Mexico in September 1998. It quickly was upgraded from a tropical disturbance to tropical storm status and then to a hurricane. Earl possessed hybrid (tropical and extratropical) characteristics throughout its lifetime. The system maintained and erratic track, which led to wide variability in the operational track forecasts. It eventually made landfall on the Florida panhandle on 2 September and raced northeastward. During August and September 1998, NASA conducted the third Convection and Moisture Experiment (CAMEX-3). The experiment was focused on studying hurricanes with an emphasis toward developing a better understanding of their intensification and motion. Earl provides a unique opportunity to utilize high spatial and temporal resolution data collected from the DC-8 and high altitude ER-2 NASA platforms, which flew over Earl as it made landfall. These data can also be put into broader view provided by other instruments from the Geosychronous Operational Environmental Satellites (GOES) and the Tropical Rainfall Measuring Mission (TRMM) satellites. Hurricane Earl was affected by entrainment of dry air from the northwest. Hurricane Isis was intensifying and approaching the Mexican Pacific coast with its associated outflow potentially affecting the inflow into Earl as the storm neared Florida. In addition, a longwave synoptic trough circulation was present over the eastern U.S. Either or both of these could be responsible for the dry air into the system. This paper will focus on identifying the source of the dry by using upper-level wind and moisture fields derived from the GOES 6.7 um water vapor imagery. We will attempt to relate the large-scale observations to those from the NASA aircraft. An infrared instrument onboard the ER-2 also has a similar wavelength and may be able to confirm some of the GOES findings. In addition, a microwave radiometer with 4 channels focused on measuring precipitation and its associated ice

  6. Foam Generation and Air Entrainment Near a Free Surface

    DTIC Science & Technology

    1987-09-30

    plunging jets and by the action of turbulent eddies in water flowing over spillways has been discussed by several authors. Data for the entrained air flow...r = mean jet radius. 1 They determined the size of the region in the liquid which was affected by air entrainment and mea- sured the...Spilling Breaker," J. Fluid Mech., Vol. 63, 1. E.J. McKeogh and D.A. Ervine, 1981, " Air Entrainment Rate and Diffusion Pattern of Plunging Liquid

  7. Study of Air Entrainment by a Horizontal Plunging Liquid Jet

    NASA Astrophysics Data System (ADS)

    Trujillo, Mario; Deshpande, Suraj; Wu, Xiongjun; Chahine, Georges

    2009-11-01

    The process of air entrainment following the impact of an initially horizontal circular water jet on a pool of water has been studied computationally and experimentally. It has been found that the entrainment of air cavities in the near field region is periodic, not continuous as reported in earlier studies. The simulations are based on a Volume-of-Fluid methodology with interfacial compression using a modified version of the open source utilities, OpenFoam. Close agreement with experiments is reported on the creation of cavities in the near field, where air entrainment occurs. The period of entrainment is found to be proportional to g, and a simplified closed-form solution for this periodic event is presented. An overall physical picture of the mechanisms leading to bubble formation is given. The far field, which is characterized by the presence of small bubbles is only partially resolved computationally. Comparisons against velocity data are performed in this region leading to adequate qualitative agreement.

  8. Effect of laminar air flow and clean-room dress on contamination rates of intravenous admixtures.

    PubMed

    Brier, K L; Latiolais, C J; Schneider, P J; Moore, T D; Buesching, W J; Wentworth, B C

    1981-08-01

    The effect of laminar air flow conditions and clean-room dress on the microbial contamination rates of intravenous admixtures was investigated. Intravenous admixtures were prepared by one investigator using aseptic technique under four environmental conditions: laminar air flow conditions with clean-room dress; laminar air flow without clean-room dress; clean table top with clean-room dress; and clean table top without clean-room dress. In each environmental condition, 350 admixtures were compounded. Negative-control samples (n = 150) were also tested, as were 10 positive-control samples. Samples were tested in each of two growth media and incubated at 35 degrees C for 14 days or until growth occurred. The incidence of contamination of admixtures compounded in laminar air flow conditions was significantly less than the contamination of those compounded on a clean table top (p less than 0.05) regardless of the operator's dress. The incidence of contamination of admixtures compounded while wearing clean-room dress was not significantly different from those prepared while not wearing clean-room dress regardless of the environment in which the admixture was prepared. The overall low level of contamination [0.79% (11/1400)] was inconclusive regarding the effect of dress on the incidence of contamination when admixtures were prepared under LAF conditions. It is concluded that, when one adheres to aseptic technique, the environment in which admixtures are compounded is the most important variable affecting the microbial contamination rate.

  9. Entrainment.

    ERIC Educational Resources Information Center

    Carrier, Romance F.

    1978-01-01

    Presents a literature review including: (1) theoretical studies concerned with the development of methdology to determine the significance of entrainment effects to whale populations and ecosystems; and (2) site and laboratory studies. A list of 107 references drawn from the 1976 and 1977 literature is also presented. (HM)

  10. The Effect of Solid Admixtures on the Velocity of Motion of a Free Dusty Air Jet

    NASA Technical Reports Server (NTRS)

    Chernov, A. P.

    1957-01-01

    In dusty air flows occurring in industrial practice in transport by air pressure of friable materials, in the drying, annealing, and so forth, of a pulverized solid mass in suspension, and in other processes, the concentration of solid particles usually has a magnitude of the order of 1 kg per 1 kg of air. At such a concentration, the ratio of the volume of the particles to the volume of the air is small (less than one-thousandth part). However, regardless of this, the presence of a solid admixture manifests itself in the rules for the velocity distribution of the air in a dusty air flow. As a result, the rules of velocity change are different for clean and for dusty air flows. The estimation of the influence of the admixture on the velocity of the motion of the flow presents a definitive interest. One of the attempts to estimate that influence on the axial velocity of a free axially symmetrical jet with admixtures was made by Abramovich. Abramovich assumed beforehand that the fine particles of the admixture in the jet are subject to the motion of the air (that is, that the velocity of the admixture is approximately equal to the local velocity of the air); he then took as the basis of his considerations, in solving the problem, the condition that the amount of motion of the two-phase jet must be constant.

  11. Freeze-Thaw Durability of Air-Entrained Concrete

    PubMed Central

    Shang, Huai-Shuai; Yi, Ting-Hua

    2013-01-01

    One of the most damaging actions affecting concrete is the abrupt temperature change (freeze-thaw cycles). The types of deterioration of concrete structures by cyclic freeze-thaw can be largely classified into surface scaling (characterized by the weight loss) and internal crack growth (characterized by the loss of dynamic modulus of elasticity). The present study explored the durability of concrete made with air-entraining agent subjected to 0, 100, 200, 300, and 400 cycles of freeze-thaw. The experimental study of C20, C25, C30, C40, and C50 air-entrained concrete specimens was completed according to “the test method of long-term and durability on ordinary concrete” GB/T 50082-2009. The dynamic modulus of elasticity and weight loss of specimens were measured after different cycles of freeze-thaw. The influence of freeze-thaw cycles on the relative dynamic modulus of elasticity and weight loss was analyzed. The findings showed that the dynamic modulus of elasticity and weight decreased as the freeze-thaw cycles were repeated. They revealed that the C30, C40, and C50 air-entrained concrete was still durable after 300 cycles of freeze-thaw according to the experimental results. PMID:23576906

  12. Air entrainment and the dynamics of volcanic jets and plumes

    NASA Astrophysics Data System (ADS)

    Mastin, L. G.; Solovitz, S.

    2008-12-01

    During a typical pyroclastic eruption, gas and pyroclasts exit a volcanic vent at speeds of tens to hundreds of meters per second. At the vent the mixture is negatively buoyant, and rises as a plinian column only if it ingests and heats sufficient air to attain positive buoyancy. As erosion increases vent radius r during an eruption, eruptive mass flux increases with r2, but the mass of air entrained increases only with r1. Hence the column ingests progressively less air relative to its mass and eventually, at some threshold mass flux m, collapses. The threshold mass flux m depends strongly on the air entrainment coefficient ɛ, i.e. the velocity of inrushing air normalized to the upward jet velocity. The value of ɛ is not well characterized in the near-vent region, and likely varies with vent geometry, overpressure, and jet density among other factors. Theoretical scaling relations suggest that a two-fold variation in ɛ (e.g. 0.05-0.10) results in a four-fold variation in m. Numerical models of overpressured jets show that near- vent entrainment may be inhibited by shock waves, promoting partial or oscillatory column collapse within an otherwise steady plinian column. Here we present the first results of laboratory experiments using particle image velocimetry to quantify near-vent air entrainment. In these experiments, we use a jet of compressed air seeded with 3 μm TiO2 tracer particles, exiting a vertically-directed pipe 1.27 cm in inside diameter and 18 cm long, with upstream pressures of 0 to 21 kPa, producing a pressure-balanced jet at the exit with velocities up to about 180 m s-1. The ambient air was seeded with tracer oil droplets a few micrometers in diameter from a fog machine. The seeded jet was illuminated by a 0.5 mm-thick Nd:YAG laser sheet that extended 5 cm above and horizontally from the vent. Particles illuminated by this sheet were photographed by pairs of images separated in time by 10 to 200 μs, from which we were able to extract flow

  13. An experimental study of air entrainment and oxygen transfer at a water jet from a nozzle with air holes.

    PubMed

    Baylar, Ahmet; Emiroglu, M Emin

    2004-01-01

    An adequate supply of dissolved oxygen is important in natural rivers and in some water treatment processes. The dissolved oxygen concentration can be enhanced by entraining air bubbles in a receiving pool. When a water jet impinges a receiving pool at rest, air bubbles may be entrained and carried away below the pool free surface. This process is called plunging water jet entrainment and aeration. This paper describes an experimental study of the air entrainment rate and oxygen transfer efficiency of circular nozzles with and without air holes. In particular, the effect of varying the number, positions, and open/close status of the air holes is investigated. A negative pressure occurred depending on the air holes opened on the circular nozzles. This phenomenon affected the water jet expansion, water jet shape, air entrainment, and bubble penetration depth and, hence, the oxygen transfer efficiency. It was demonstrated that the air entrainment rate and the oxygen transfer efficiency of the circular nozzles with air holes were better than those of the circular nozzles without air holes. Therefore, adding air holes to a simple, circular nozzle could lead to a significantly increased air entrainment rate and oxygen transfer efficiency.

  14. Air Entrainment in a Liquid Cell due to Fiber Drawing

    NASA Astrophysics Data System (ADS)

    Simpkins, P. G.; Kuck, V. J.

    1997-11-01

    Preliminary observations of air entrainment into a liquid bath of viscous Newtonian fluid are described. The motion generated by an optical fiber moving vertically through the bath gives rise to a free surface that is cusp-like. Photomicrographs of the contact region, however, illustrate that the free surface profile becomes conical with a small included angle that is draw speed dependent. There is some evidence to suggest that tip-streaming ( Taylor, G. I. 1934 The Formation of Emulsions in Definable Fields of Flow. Proc. Roy. Soc. Lond. A146, 501-523.) footnote Sherwood, J. D. 1984 Tip Streaming from Slender Drops in a Nonlinear Extensional Flow. J. Fluid Mech. 144, 281-295. filaments of air emanate from the contact zone to give rise to minute ( 10mm) bubbles via Rayleigh-Taylor instability. Continuous operation after the onset of tip-streaming results in the creation of larger bubbles from the small ones via coalescence during recirculation in the bath. Eventually the occurrence of very large bubbles can lead to break out and the absence of any coating on the fiber.

  15. Entrainment of Upper Level Dry Air Into Hurricane Earl

    NASA Technical Reports Server (NTRS)

    Guillory, Anthony R.; Jedlovec, Gary J.; Hood, Robbie E.; Atkinson, Robert J.; LaFontaine, Frank J.

    1999-01-01

    Hurricane Earl formed in the Gulf of Mexico in September 1998. It quickly was upgraded from a tropical disturbance to tropical storm status and then to a hurricane. Earl possessed hybrid (tropical and extratropical) characteristics throughout its lifetime. The system maintained and erratic track, which led to wide variability in the operational track forecasts. It eventually made landfall on the Florida panhandle on 2 September and raced northeastward. During August and September 1998, NASA conducted the third Convection and Moisture Experiment (CAMEX-3). The experiment was focused on studying hurricanes with an emphasis toward developing a better understanding of their intensification and motion. Earl provides a unique opportunity to utilize high spatial and temporal resolution data collected from the DC-8 and high altitude ER-2 NASA platforms, which flew over Earl as it made landfall. These data can also be put into broader view provided by other instruments from the Geosynchronous Operational Environmental Satellites (GOES) and the Tropical Rainfall Measuring Mission (TRMM) satellites. Hurricane Earl was affected by entrainment of dry air from the northwest. Hurricane Isis was intensifying and approaching the Mexican Pacific coast with its associated outflow potentially affecting the inflow into Earl as the storm neared Florida. In addition, a longwave synoptic trough circulation was present over the eastern U.S. Either or both of these could be responsible for the dry air into the system. This paper will focus on identifying the source of the dry by using upper-level wind and moisture fields derived from the GOES 6.7 um water vapor imagery. We will attempt to relate the large-scale observations to those from the NASA aircraft. An infrared instrument onboard the ER-2 also has a similar wavelength and may be able to confirm some of the GOES findings. In addition, a microwave radiometer with 4 channels focused on measuring precipitation and its associated ice

  16. Acoustic measurements of air entrainment by breaking waves

    NASA Astrophysics Data System (ADS)

    Terrill, Eric James

    1998-11-01

    Wave breaking at the surface of the ocean plays an important role in air-sea interaction processes. Bubbles entrained by breaking waves not only enhance the transfer of atmospheric gases to the ocean, but also modify the phase speed and attenuation of acoustic waves propagating through the bubbly medium. The development of acoustic instruments to measure bubbles and the results obtained from a number of field and laboratory experiments are presented. The first part of this dissertation addresses sound speed measurements made in the North Atlantic as part of the Acoustic Surface Reverberation Experiment (ASREX). An autonomous buoy system that directly measures the sound speed in the surface wave layer was developed. Data obtained with the instrument spanned several storm cycles with wind speeds and significant wave heights reaching 20 m/s and 8 m, respectively. The use of Wood's relation (1946) allows the calculation of the void fraction of air based on the low-frequency sound speed measurements. The highly variable near-surface sound speed/void fraction field is analyzed with respect to wind and surface wave- breaking parameters. The second part of this dissertation presents the development of a broadband acoustic technique which simultaneously measures the phase speed and attenuation at acoustic frequencies ranging from 4-100 kHz. The acoustic data is inverted for the size distribution of bubbles using algorithms that are based upon the physics of sound propagation through a bubbly mixture. This acoustic technique was evaluated in the large wave channel at the Hydraulics Laboratory, Scripps Institution of Oceanography, using mechanically generated breaking waves in seawater. Field measurements of bubble concentrations that result from wave breaking were made in both shallow water off Scripps Pier, California and in deep water near Point Conception, California using the broadband technique. Significant variability is observed in the bubble field, characterized by

  17. What's All the Talc About? Air Entrainment in Dilute Pyroclastic Density Currents

    NASA Astrophysics Data System (ADS)

    Marshall, B. J.; Andrews, B. J.; Fauria, K.

    2015-12-01

    A quantitative understanding of air entrainment is critical to predicting the behaviors of dilute Pyroclastic Density Currents (PDCs), including runout distance, liftoff, and mass fractionation into co-PDC plumes. We performed experiments in an 8.5x6x2.6 meter tank using 20 micron talc powder over a range of conditions to describe air entrainment as a function of temperature, duration and mass flux. The experiments are reproducible and are scaled with respect to the densimetric and thermal Richardson numbers (Ri and RiT), Froude number, thermal to kinetic energy density ratio (TEb/KE), Stokes number, and Settling number, such that they are dynamically similar to natural dilute PDCs. Experiments are illuminated with a swept laser sheet and imaged at 1000 Hz to create 3D reconstructions of the currents, with ~1-2 cm resolution, at up to 1.5 Hz. An array of 30 high-frequency thermocouples record the precise temperature in the currents at 3 Hz. Bulk entrainment rates are calculated based on measured current volumes, surface areas, temperatures and velocities. Entrainment rates vary from ~0-0.9 and do not show simple variation with TEb/KE, Ri, or RiT. Entrainment does, however, increase with decreasing eruption duration and increasing mass flux. Our results suggest that current heads entrain air more efficiently than current bodies (>0.5 compared to ~0.1). Because shorter duration currents have proportionally larger heads, their bulk entrainment rates are controlled by those heads, whereas longer duration currents are dominated by their bodies. Our experiments demonstrate that air entrainment, which exerts a fundamental control on PDC runout and liftoff, varies spatially and temporally within PDCs.

  18. PTV analysis of the entrained air into the diesel spray at high-pressure injection

    NASA Astrophysics Data System (ADS)

    Toda, Naoki; Yamashita, Hayato; Mashida, Makoto

    2014-08-01

    In order to clarify the effect of high-pressure injection on soot reduction in terms of the air entrainment into spray, the air flow surrounding the spray and set-off length indicating the distance from the nozzle tip to the flame region in diffusion diesel combustion were investigated using 300MPa injection of a multi-hole injector. The measurement of the air entrainment flow was carried out at non-evaporating condition using consecutive PTV (particle tracking velocimetry) method with a high-speed camera and a high-frequency pulse YAG laser. The set-off length was measured at highpressure and high-temperature using the combustion bomb of constant volume and optical system of shadow graph method. And the amount of air entrainment into spray until reaching set-off length in diffusion combustion was studied as a factor of soot formation.

  19. Effect of fast freeze-thaw cycles on mechanical properties of ordinary-air-entrained concrete.

    PubMed

    Shang, Huai-shuai; Cao, Wei-qun; Wang, Bin

    2014-01-01

    Freezing-thawing resistance is a very significant characteristic for concrete in severe environment (such as cold region with the lowest temperature below 0°C). In this study, ordinary-air-entrained (O-A-E) concrete was produced in a laboratory environment; the compressive strength, cubic compressive strength of C50, C40, C30, C25, and C20 ordinary-air-entrained concrete, tensile strength, and cleavage strength of C30 ordinary-air-entrained concrete were measured after fast freeze-thaw cycles. The effects of fast freeze-thaw cycles on the mechanical properties (compressive strength and cleavage strength) of ordinary-air-entrained concrete materials are investigated on the basis of the experimental results. And the concise mathematical formula between mechanical behavior and number of fast freeze-thaw cycles was established. The experiment results can be used as a reference in design, maintenance, and life prediction of ordinary-air-entrained concrete structure (such as dam, offshore platform, etc.) in cold regions.

  20. Effect of Fast Freeze-Thaw Cycles on Mechanical Properties of Ordinary-Air-Entrained Concrete

    PubMed Central

    Shang, Huai-shuai; Cao, Wei-qun; Wang, Bin

    2014-01-01

    Freezing-thawing resistance is a very significant characteristic for concrete in severe environment (such as cold region with the lowest temperature below 0°C). In this study, ordinary-air-entrained (O-A-E) concrete was produced in a laboratory environment; the compressive strength, cubic compressive strength of C50, C40, C30, C25, and C20 ordinary-air-entrained concrete, tensile strength, and cleavage strength of C30 ordinary-air-entrained concrete were measured after fast freeze-thaw cycles. The effects of fast freeze-thaw cycles on the mechanical properties (compressive strength and cleavage strength) of ordinary-air-entrained concrete materials are investigated on the basis of the experimental results. And the concise mathematical formula between mechanical behavior and number of fast freeze-thaw cycles was established. The experiment results can be used as a reference in design, maintenance, and life prediction of ordinary-air-entrained concrete structure (such as dam, offshore platform, etc.) in cold regions. PMID:24895671

  1. Quantification of hood effectiveness and entrained subsurface air in a Seattle Hospital

    SciTech Connect

    Dietz, R.N.; Goodrich, R.W.

    1994-05-01

    An underground 3-story wing of a hospital having problems with sewer air odors was tested with perfluorocarbon tracer (PFI) technology to quantify the performance of the mechanical ventilation system and determine the extent of sewer air entrainment and chemical hood effectiveness.

  2. Method and apparatus for preventing air pollution by the entrainment of particulate material

    SciTech Connect

    Walters, W.Z.

    1986-05-06

    A particulate material handling system is described which is capable of reducing the pollution of air by the entrainment of particulate solids. The system consists of: a covered elevated conveyor means from which the particulate material can be deposited to form a pile of that material in a designated area or to add to such a pile and air diversion means which is adapted to so cooperate with the conveyor as to prevent wind from entraining fines in the particulate material as it is dumped onto the pile or into the area and to prevent wind from stripping and entraining material from the pile by diverting the wind upwardly over the top of the elevated conveyor means and creating an eddy in the air on the leeward side of the pile of particulate material. Particulate material entrained in the air diverted over the elevated conveyor means will drop out of the air currents in the region where the eddy currents are formed and be deposited on the leeward side of the pile, the air diversion means being vertically oriented and adapted to extend lengthwise along at least the initial segment of the pile and essentially along the longitudinal centerline. The air diversion means have a lower edge which is adapted to be proximate to, in contact with, or buried in the pile depending on the height of the pile, and the conveyor being so constructed that it is capable of depositing particulate material on both sides of the air diversion means.

  3. Numerical simulations of transient air entrainment by rough and smooth plunging jets

    NASA Astrophysics Data System (ADS)

    Kiger, Ken; Kharoua, Nabil; Khezzar, Lyes

    2012-11-01

    Plunging jets are intimately linked to the process of air or gas entrainment into liquid pools, and can play either a beneficial or detrimental role in many environmental and industrial flows. The purpose of the present work is to assess the capability of combined LES/VOF algorithms to simulate water/air plunging jet flows, starting with the transient impact of the free jet, initial cavity formation, pinch off, and evolution towards a continuous entrainment phase. We focus on what happens in the transient impact phase for weakly and highly disturbed jets, operating with impact conditions of Re = UD / ν = 10 , 500 , We = ρU2 D / σ = 300 and Fr =U2 / gD = 83 . In particular, the study investigates the ability of the simulations to capture liquid surface instabilities and the influence of the exiting jet turbulence content on the entrainment behavior. The results indicate that the qualitative behavior of the entrainment process follows very closely what is observed in experiments, with the rough jet exhibiting surface instabilities at impact that are not present in the smooth jet. These have an effect on the development of the initial air cavity and interfacial area, leading to a doubling of the interfacial area for a nominally similar entrained volume of air.

  4. Air Entrainment and Thermal Evolution of Pyroclastic Density Currents at Tungurahua, Ecuador

    NASA Astrophysics Data System (ADS)

    Benage, M. C.; Dufek, J.; Mothes, P. A.

    2015-12-01

    The entrainment of air into pyroclastic density currents (PDCs) impacts the thermal profile and evolution of the current. However, the associated hazards and opaqueness of PDCs make it difficult to discern internal dynamics and entrainment through direct observations. In this work, we use a three-dimensional multiphase Eulerian-Eulerian-Lagrangian (EEL) model, deposit descriptions, and pyroclast field data, such as paleomagnetic and rind thickness, to study the entrainment efficiency and thus the thermal history of PDCs down the Juive Grande quebrada during the August 16-17th 2006 eruption of Tungurahua volcano. We conclude that 1) the efficient entrainment of ambient air cools the nose and upper portion of the PDCs by 30-60% of the original temperature, 2) PDCs with an initial temperature of 727 °C are on average more efficient at entraining ambient air than PDCs with an initial temperature of 327 °C, 3) the channelized PDCs develop a particle concentration gradient with a concentrated bed load region and suspended load region that leads to a large vertical temperature gradient, and 4) observations and pyroclast temperatures and textures suggest that the PDCs had temperatures greater than 327 °C in the bed load region while the upper, exterior portion of the currents cooled down to temperatures less than 100 °C. By combining field data and numerical models, the structure and dynamics of a PDC can be deduced for these relatively common small volume PDCs.

  5. Computational Study of Air Entrainment by Plunging Jets-Influence of Jet Inclination

    NASA Astrophysics Data System (ADS)

    Deshpande, Suraj; Trujillo, Mario

    2012-11-01

    The process of air entrainment by a continuous liquid jet plunging into a quiescent liquid pool is studied computationally. Our earlier study [APS2011] focused on shallow impacts and the discernible periodicity of air cavity formation. Here, we consider the effect of jet angle. For steep impacts, we see a chaotic formation of small cavities, in agreement with the literature. To explain the difference, we track evolution of the flow from initial impact to quasi-stationary state, for different jet inclinations. The initial impact always yields a large air cavity, regardless of jet angle. Difference emerges in the quasi-stationary state where shallow jets demonstrate the periodicity but the steep jets do not. We show that this is a manifestation of the air entrainment being a function of flow disturbance. For shallow jets, the disturbance originates from strong wavelike motion of the cavity which results in a total disruption of the jet. Thus, the resulting cavities are large and occur periodically. For the steep jets, entrainment happens by collapse of a thin gas film uniformly enshrouding the submerged jet. Such a thin film is very sensitive to the local flow disturbances. Thus, its collapse occurs stochastically all around the jet causing chaotic entrainment of small air pocket.

  6. Experimental study of near-field air entrainment by subsonic volcanic jets

    USGS Publications Warehouse

    Solovitz, S.A.; Mastin, L.G.

    2009-01-01

    The flow structure in the developing region of a turbulent jet has been examined using particle image velocimetry methods, considering the flow at steady state conditions. The velocity fields were integrated to determine the ratio of the entrained air speed to the jet speed, which was approximately 0.03 for a range of Mach numbers up to 0.89 and. Reynolds numbers up to 217,000. This range of experimental Mach and Reynolds numbers is higher than previously considered for high-accuracy entrainment measures, particularly in the near-vent region. The entrainment values are below those commonly used for geophysical analyses of volcanic plumes, suggesting that existing 1-D models are likely to understate the tendency for column collapse. Copyright 2009 by the American Geophysical Union.

  7. Air entrainment by a plunging liquid jet on a liquid pool

    NASA Astrophysics Data System (ADS)

    Liñan, Amable; Lasheras, Juan C.

    1999-11-01

    When a liquid jet impinges on liquid pool, with a velocity higher than a critical velocity, a thin air film is entrained by the jet. The thickness ha of the air film, and thus the air mass entrained by the jet, is a function of its radius a and velocity U. This function, for the realistic small values of the capillary number ɛ = μa U/σ << 1 (based on the air viscosity μa and surface tension σ) turns out to be of the form h_a/a = F(a/a_c, ɛ), where a_c=√ σ/ρl g is the capillary length (based on the acceleration of gravity and liquid density ρ_l). An analysis similar to the analysis of Levish and Landau, for the entrainment of liquid by a plate moving out of a liquid pool, shows that the dependence of h_a/a on ɛ is of the form h_a/a = ɛ^2/3f(a/a_c), where f is of order unity for a/ac << 1 and f ≈ a_c/a for large values of a_c/a

  8. Large Field of View PIV Measurements of Air Entrainment by SLS SMAT Water Sound Suppression System

    NASA Astrophysics Data System (ADS)

    Stegmeir, Matthew; Pothos, Stamatios; Bissell, Dan

    2015-11-01

    Water-based sound suppressions systems have been used to reduce the acoustic impact of space vehicle launches. Water flows at a high rate during launch in order to suppress Engine Generated Acoustics and other potentially damaging sources of noise. For the Space Shuttle, peak flow rates exceeded 900,000 gallons per minute. Such large water flow rates have the potential to induce substantial entrainment of the surrounding air, affecting the launch conditions and generating airflow around the launch vehicle. Validation testing is necessary to quantify this impact for future space launch systems. In this study, PIV measurements were performed to map the flow field above the SMAT sub-scale launch vehicle scaled launch stand. Air entrainment effects generated by a water-based sound suppression system were studied. Mean and fluctuating fluid velocities were mapped up to 1m above the test stand deck and compared to simulation results. Measurements performed with NASA MSFC.

  9. Material Properties Governing Co-Current Flame Spread: The Effect of Air Entrainment

    NASA Technical Reports Server (NTRS)

    Coutin, Mickael; Rangwala, Ali S.; Torero, Jose L.; Buckley, Steven G.

    2003-01-01

    A study on the effects of lateral air entrainment on an upward spreading flame has been conducted. The fuel is a flat PMMA plate of constant length and thickness but variable width. Video images and surface temperatures have allowed establishing the progression of the pyrolyis front and on the flame stand-off distance. These measurements have been incorporated into a theoretical formulation to establish characteristic mass transfer numbers ("B" numbers). The mass transfer number is deemed as a material related parameter that could be used to assess the potential of a material to sustain co-current flame spread. The experimental results show that the theoretical formulation fails to describe heat exchange between the flame and the surface. The discrepancies seem to be associated to lateral air entrainment that lifts the flame off the surface and leads to an over estimation of the local mass transfer number. Particle Image Velocimetry (PIV) measurements are in the process of being acquired. These measurements are intended to provide insight on the effect of air entrainment on the flame stand-off distance. A brief description of the methodology to be followed is presented here.

  10. Bending and growth of entrained air filament under converging and asymmetric rotational fields

    NASA Astrophysics Data System (ADS)

    Kumar, Parmod; Das, Arup K.; Mitra, Sushanta K.

    2017-02-01

    Here we have proposed the increase of the entrainment rate by extruding an air filament under the action of convergent but asymmetric rotational field. By varying the source speed and the diameter of rotational fields, we showed the bending of an air filament towards the higher strength direction of the asymmetric inertia. Interfacial profiles like bubble ejection from the air filament and non-collapsible entrainment with air accumulation in a stagnant zone are obtained in finite volume based numerical simulations, on gradual increase of average rotational fields. Physical understanding of bent interface profile reveals the presence of multiple stages in filament growth depending upon the inertia of surrounding medium. Accumulation of air in the stagnant zone is found to be more prominent in case of rotational speed based asymmetry in contrast to its counterpart having diametric asymmetry of imposing sources. Relative comparison between these two methods of producing asymmetric field showed faster growth of filament upon varying the source diameter, while keeping the speed same. In case of extreme retardation and enhancement of rotational asymmetry, film pinch off and formation of bubble train have been reported. The shape of ejected bubbles is governed by the inertia of the surrounding medium, and bubbles have taken elliptical shapes with their major axis aligned parallel to the adjacent velocity field.

  11. Failure Mechanisms of Air Entrainment in Drop Impact on Lubricated Surfaces

    NASA Astrophysics Data System (ADS)

    Pack, Min; Hu, Han; Kim, Dong-Ook; Zheng, Zhong; Stone, Howard; Sun, Ying; Drexel University Team; Princeton University Team

    2016-11-01

    Lubricated surfaces have recently been introduced and studied due to their potential benefit in various applications. Combining the techniques of total internal reflection microscopy and reflection interference microscopy, we examine the dynamics of an underlying air film upon drop impact on a lubricated substrate. In contrast to drop impact on solid surfaces where asperities cause random breakup of the entraining air film, we report two air film failure mechanisms on lubricated surfaces. In particular, using thin liquid films of high viscosity, we show that air film rupture shifts from a randomly driven to a controlled event. At low Weber numbers (We) the droplet bounces. At intermediate We, the air film fails at the center as the drop top surface crashes downward owing to impact-induced capillary waves; the resulting liquid-liquid contact time is found to be independent of We. In contrast, at high We, the air film failure occurs much earlier in time at the first inflection point of the air film shape away from the drop center, where the liquid-liquid van der Waals interactions become important. The predictable failure modes of the air film upon drop impact sheds light on droplet deposition in applications such as lubricant-infused self-cleaning surfaces. Support for this work was provided by the National Science Foundation under Grant No. CMMI-1401438 to Y.S.

  12. Dynamical properties of breaking waves: dissipation, air entrainment and spray generation

    NASA Astrophysics Data System (ADS)

    Deike, Luc; Melville, W. Kendall; Popinet, Stephane

    2016-11-01

    Wave breaking in the ocean is of fundamental importance in order to quantify wave dissipation and air-sea interaction, including gas and momentum exchange, and to improve parametrization for ocean-atmosphere exchange in weather and climate models. Here, we present 2D and 3D direct numerical simulations of breaking waves, compared with laboratory measurements. The dissipation due to breaking in the 2D and 3D simulations is found to be in good agreement with experimental observations and inertial-scaling arguments. We discuss the transition from a 2D to a 3D flow during breaking. We present a model for air entrainment and bubble statistics that describes well the experimental and numerical data, and is based on turbulent fragmentation of the bubbles and a balance between buoyancy forces and viscous dissipation. Finally we discuss the generation of large drops during the impact and splashing process.

  13. Failure mechanisms of air entrainment in drop impact on lubricated surfaces.

    PubMed

    Pack, M; Hu, H; Kim, D; Zheng, Z; Stone, H A; Sun, Y

    2017-03-22

    Lubricated surfaces have recently been introduced and studied due to their potential benefit in various configurations and applications. Combining the techniques of total internal reflection microscopy and reflection interference microscopy, we examine the dynamics of an underlying air film upon drop impact on a lubricated substrate where the thin liquid film is immiscible to the drop. In contrast to drop impact on solid surfaces where even the smallest asperities cause random breakup of the entraining air film, we report two air film failure mechanisms on lubricated surfaces. In particular, using ≈5 μm thick liquid films of high viscosity, which should make the substrate nearly atomically smooth, we show that air film rupture shifts from asperity-driven to a controlled event. At low Weber numbers (We < 2, We = ρlU0(2)R/σ, U0 the impact velocity, R the drop radius, and ρl the density and σ the surface tension of the droplet) the droplet bounces. At intermediate We (2 < We < 10), the air film fails at the center as the top surface of the drop crashes downward owing to impact-induced capillary waves; the resulting liquid-liquid contact time is found to be independent of We. In contrast, at high We (We > 10), the air film failure occurs much earlier in time at the first inflection point of the air film shape away from the drop center, where the liquid-liquid van der Waals interactions become important. The predictable failure modes of the air film upon drop impact sheds light on droplet deposition in applications such as lubricant-infused self-cleaning surfaces.

  14. Air entrainment and bubble statistics in three-dimensional breaking waves

    NASA Astrophysics Data System (ADS)

    Deike, Luc; Melville, W. K.; Popinet, Stephane

    2015-11-01

    Wave breaking in the ocean is of fundamental importance in order to quantify wave dissipation and air-sea interaction, including gas and momentum exchange, and to improve parametrizationsfor weather and climate models. Here, we investigate air entrainment and bubble statistics in three-dimensional breaking waves through direct numerical simulations of the two-phase air-water flow using the Open Source solver Gerris. As in previous 2D simulations, the dissipation due to breaking is found to be in good agreement with previous experimental observations and inertial-scaling arguments. For radii larger than the Hinze scale, the bubble size distribution, is found to follow a power law of the radius, r-3and to scale linearly with the time dependent turbulent dissipation rate during the active breaking stages. The time-averaged bubble size distribution is found to follow the same power law of the radius and to scale linearly with the wave dissipation rate per unit length of breaking crest. We propose a phenomenological turbulent bubble break-up model that describes the numerical results and existing experimental results.

  15. Keeping warm with fur in cold water: entrainment of air in hairy surfaces

    NASA Astrophysics Data System (ADS)

    Nasto, Alice; Regli, Marianne; Brun, Pierre-Thomas; Clanet, Christophe; Hosoi, Anette

    2015-11-01

    Instead of relying on a thick layer of body fat for insulation as many aquatic mammals do, fur seals and otters trap air in their dense fur for insulation in cold water. Using a combination of model experiments and theory, we rationalize this mechanism of air trapping underwater for thermoregulation. For the model experiments, hairy surfaces are fabricated using laser cut molds and casting samples with PDMS. Modeling the hairy texture as a network of capillary tubes, the imbibition speed of water into the hairs is obtained through a balance of hydrostatic pressure and viscous stress. In this scenario, the bending of the hairs and capillary forces are negligible. The maximum diving depth that can be achieved before the hairs are wetted to the roots is predicted from a comparison of the diving speed and imbibition speed. The amount of air that is entrained in hairy surfaces is greater than what is expected for classic Landau-Levich-Derjaguin plate plunging. A phase diagram with the parameters from experiments and biological data allows a comparison of the model system and animals.

  16. Experimental study on durability improvement of fly ash concrete with durability improving admixture.

    PubMed

    Quan, Hong-zhu; Kasami, Hideo

    2014-01-01

    In order to improve the durability of fly ash concrete, a series of experimental studies are carried out, where durability improving admixture is used to reduce drying shrinkage and improve freezing-thawing resistance. The effects of durability improving admixture, air content, water-binder ratio, and fly ash replacement ratio on the performance of fly ash concrete are discussed in this paper. The results show that by using durability improving admixture in nonair-entraining fly ash concrete, the compressive strength of fly ash concrete can be improved by 10%-20%, and the drying shrinkage is reduced by 60%. Carbonation resistance of concrete is roughly proportional to water-cement ratio regardless of water-binder ratio and fly ash replacement ratio. For the specimens cured in air for 2 weeks, the freezing-thawing resistance is improved. In addition, by making use of durability improving admixture, it is easier to control the air content and make fly ash concrete into nonair-entraining one. The quality of fly ash concrete is thereby optimized.

  17. Laboratory air-entraining breaking waves: Imaging visible foam signatures to estimate energy dissipation

    NASA Astrophysics Data System (ADS)

    Callaghan, A. H.; Deane, G. B.; Stokes, M. D.

    2016-11-01

    Oceanic air-entraining breaking waves fundamentally influence weather and climate through bubble-mediated ocean-atmosphere exchanges, and influence marine engineering design by impacting statistics of wave heights, crest heights, and wave loading. However, estimating individual breaking wave energy dissipation in the field remains a fundamental problem. Using laboratory experiments, we introduce a new method to estimate energy dissipation by individual breaking waves using above-water images of evolving foam. The data show the volume of the breaking wave two-phase flow integrated in time during active breaking scales linearly with wave energy dissipated. To determine the volume time-integral, above-water images of surface foam provide the breaking wave timescale and horizontal extent of the submerged bubble plume, and the foam decay time provides an estimate of the bubble plume penetration depth. We anticipate that this novel remote sensing method will improve predictions of air-sea exchanges, validate models of wave energy dissipation, and inform ocean engineering design.

  18. Experimental and computational study and development of the bituminous coal entrained-flow air-blown gasifier for IGCC

    NASA Astrophysics Data System (ADS)

    Abaimov, N. A.; Osipov, P. V.; Ryzhkov, A. F.

    2016-10-01

    In the paper the development of the advanced bituminous coal entrained-flow air- blown gasifier for the high power integrated gasification combined cycle is considered. The computational fluid dynamics technique is used as the basic development tool. The experiment on the pressurized entrained-flow gasifier was performed by “NPO CKTI” JSC for the thermochemical processes submodel verification. The kinetic constants for Kuznetsk bituminous coal (flame coal), obtained by thermal gravimetric analysis method, are used in the model. The calculation results obtained by the CFD model are in satisfactory agreements with experimental data. On the basis of the verified model the advanced gasifier structure was suggested which permits to increase the hydrogen content in the synthesis gas and consequently to improve the gas turbine efficiency. In order to meet the specified requirements vapor is added on the second stage of MHI type gasifier and heat necessary for air gasification is compensated by supplemental heating of the blasting air.

  19. Leaching of concrete admixtures containing thiocyanate and resin acids.

    PubMed

    Andersson, A C; Stromvall, A M

    2001-02-15

    There is an increasing concern about the emission of pollutants during the construction and lifetime of buildings. The leaching of concrete admixtures containing thiocyanate and resin acids was studied using standard leaching tests and chemical analysis. Ecotoxicological risk was assessed for each admixture. Thiocyanate leaching from concrete, with a chlorine-free accelerating admixture, was determined by ion chromatography. Of the total amount of thiocyanate added, 6-8% was emitted within 30 d. The thiocyanate diffusion curve indicates a fast dissolution process from the surface layer, followed by a slower continuous diffusion process. Thiocyanate exhibits both acute and chronic toxicity, which makes it of immediate environmental concern. Resin acid leaching from concrete test specimens containing an admixture of air-entraining agents with tall oil was determined by solid-phase extraction, methylation, and GC/MS. Of added resin acids, 10% was emitted over 143 d. The leaching curves for the resin acids indicate a continuous diffusion that is proportional to the square root of time and follows Fick's first law of diffusion. The chemical composition of the resin acids in the leachate demonstrates degradation and rearrangement of the resin acids during diffusion. Resin acids emitted from concrete are of environmental concern because they are persistent and have the ability to bioaccumulate in aquatic organisms.

  20. Modeling variable density turbulence in the wake of an air-entraining transom stern

    NASA Astrophysics Data System (ADS)

    Hendrickson, Kelli; Yue, Dick

    2015-11-01

    This work presents a priori testing of closure models for the incompressible highly-variable density turbulent (IHVDT) flows in the near wake region of a transom stern. This three-dimensional flow is comprised of convergent corner waves that originate from the body and collide on the ship center plane forming the ``rooster tail'' that then widens to form the divergent wave train. These violent free-surface flows and breaking waves are characterized by significant turbulent mass flux (TMF) at Atwood number At = (ρ2 -ρ1) / (ρ2 +ρ1) ~ 1 for which there is little guidance in turbulence closure modeling for the momentum and scalar transport along the wake. To whit, this work utilizes high-resolution simulations of the near wake of a canonical three-dimensional transom stern using conservative Volume-of-Fluid (cVOF), implicit Large Eddy Simulation (iLES), and Boundary Data Immersion Method (BDIM) to capture the turbulence and large scale air entrainment. Analysis of the simulation results across and along the wake for the TMF budget and turbulent anisotropy provide the physical basis of the development of multiphase turbulence closure models. Performance of isotropic and anisotropic turbulent mass flux closure models will be presented. Sponsored by the Office of Naval Research.

  1. Three-dimensional flow observation on the air entrainment into a vertical-wet-pit pump

    NASA Astrophysics Data System (ADS)

    Hirata, K.; Maeda, T.; Nagura, T.; Inoue, T.

    2016-11-01

    The authors consider the air entrainment into a suction pipe which is vertically inserted down into a suction sump across a mean free-water surface. This configuration is often referred to as the “vertical wet-pit pump,” and has many practical advantages in construction, maintenance and operation. Most of the flows appearing in various industrial and environmental problems like the present suction- sump flow become often complicated owing to both of their unsteadiness with poor periodicity and their fully-three-dimensionality. In order to understand the complicated flow inside a suction sump in the vertical-wet-pit-pump configuration, the authors experimentally observe the flow using the three-dimensional particle tracking velocimetry (3D-PTV) technique, which includes more unknown factors in accuracy and reliability than other established measuring techniques. So, the authors examine the simultaneous measurement by the 3D-PTV with another velocimetry the ultrasonic velocity profiler. As a result, under the suitable condition with high accuracy, the authors have revealed the complicated flow.

  2. Downward flow of water with entrained air in a nonuniformaly heated subdivided annulus

    SciTech Connect

    Johnston, B.S.; May, C.P.

    1992-01-01

    This paper describes an experimental study in which water was fed to a vertical annulus, entraining air in downward flow. The annulus was subdivided by longitudinal fins into four subchannels and was heated with an azimuthally varying heat flux. A bypass was provided to simulate flow in parallel channels. For steady liquid flow, inlet temperature, and pressure boundary conditions, the power was increased until critical heat flux was reached. Overheating characteristics were grouped according to the prevailing flow pattern. In annular flows (j{sub L} < 0.3 m/s) overheating of the whole test section occurs when steam production causes countercurrent flooding. In intermittent flows (0.3 < j{sub L} < 0.9 m/s) the overheating is confined to a portion of the hot subchannel. The mechanism is postulated to be stagnation of a large bubble. In bubble flows (0.9 m/s < j{sub L}) overheating occurs by diverting inlet flow to the bypass and again involves the whole test section. Except at the very lowest flow rates, critical heat flux occurs when the effluent liquid temperature is below saturation.

  3. Downward flow of water with entrained air in a nonuniformaly heated subdivided annulus

    SciTech Connect

    Johnston, B.S.; May, C.P.

    1992-10-01

    This paper describes an experimental study in which water was fed to a vertical annulus, entraining air in downward flow. The annulus was subdivided by longitudinal fins into four subchannels and was heated with an azimuthally varying heat flux. A bypass was provided to simulate flow in parallel channels. For steady liquid flow, inlet temperature, and pressure boundary conditions, the power was increased until critical heat flux was reached. Overheating characteristics were grouped according to the prevailing flow pattern. In annular flows (j{sub L} < 0.3 m/s) overheating of the whole test section occurs when steam production causes countercurrent flooding. In intermittent flows (0.3 < j{sub L} < 0.9 m/s) the overheating is confined to a portion of the hot subchannel. The mechanism is postulated to be stagnation of a large bubble. In bubble flows (0.9 m/s < j{sub L}) overheating occurs by diverting inlet flow to the bypass and again involves the whole test section. Except at the very lowest flow rates, critical heat flux occurs when the effluent liquid temperature is below saturation.

  4. ENTRAINMENT MODELS

    EPA Science Inventory

    This presentation presented information on entrainment models. Entrainment models use entrainment hypotheses to express the continuity equation. The advantage is that plume boundaries are known. A major disadvantage is that the problems that can be solved are rather simple. The ...

  5. Entrainment Heat Flux Computed with Lidar and Wavelet Technique in Buenos Aires During Last Chaitén Volcano Eruption

    NASA Astrophysics Data System (ADS)

    Pawelko, Ezequiel Eduardo; Salvador, Jacobo Omar; Ristori, Pablo Roberto; Pallotta, Juan Vicente; Otero, Lidia Ana; Quel, Eduardo Jaime

    2016-06-01

    At Lidar Division of CEILAP (CITEDEF-CONICET) a multiwavelength Raman-Rayleigh lidar optimized to measure the atmospheric boundary layer is being operated. This instrument is used for monitoring important aerosol intrusion events in Buenos Aires, such as the arrival of volcanic ashes from the Chaitén volcano eruption on May 2008. That was the first monitoring of volcanic ash with lidar in Argentina. In this event several volcanic ash plumes with high aerosol optical thickness were detected in the free atmosphere, affecting the visibility, surface radiation and therefore, the ABL evolution. In this work, the impact of ashes in entrainment flux ratio is studied. This parameter is obtained from the atmospheric boundary layer height and entrainment zone thickness using algorithms based on covariance wavelet transform.

  6. Two-phase numerical study of the flow field formed in water pump sump: influence of air entrainment

    NASA Astrophysics Data System (ADS)

    Bayeul-Lainé, A. C.; Simonet, S.; Bois, G.; Issa, A.

    2012-11-01

    In a pump sump it is imperative that the amount of non-homogenous flow and entrained air be kept to a minimum. Free air-core vortex occurring at a water-intake pipe is an important problem encountered in hydraulic engineering. These vortices reduce pump performances, may have large effects on the operating conditions and lead to increase plant operating costs.This work is an extended study starting from 2006 in LML and published by ISSA and al. in 2008, 2009 and 2010. Several cases of sump configuration have been numerically investigated using two specific commercial codes and based on the initial geometry proposed by Constantinescu and Patel. Fluent and Star CCM+ codes are used in the previous studies. The results, obtained with a structured mesh, were strongly dependant on main geometrical sump configuration such as the suction pipe position, the submergence of the suction pipe on one hand and the turbulence model on the other hand. Part of the results showed a good agreement with experimental investigations already published. Experiments, conducted in order to select best positions of the suction pipe of a water-intake sump, gave qualitative results concerning flow disturbances in the pump-intake related to sump geometries and position of the pump intake. The purpose of this paper is to reproduce the flow pattern of experiments and to confirm the geometrical parameter that influences the flow structure in such a pump. The numerical model solves the Reynolds averaged Navier-Stokes (RANS) equations and VOF multiphase model. STAR CCM+ with an adapted mesh configuration using hexahedral mesh with prism layer near walls was used. Attempts have been made to calculate two phase unsteady flow for stronger mass flow rates and stronger submergence with low water level in order to be able to capture air entrainment. The results allow the knowledge of some limits of numerical models, of mass flow rates and of submergences for air entrainment. In the validation of this

  7. Workability and strength attributes of RCC: Effects of different chemical admixtures and resulting paste

    NASA Astrophysics Data System (ADS)

    Hazaree, Chetan Vijaysingh

    Roller compacted concrete (RCC) is a drier consistency concrete proportioned with dense graded aggregates and has lesser paste content. Primarily owing to its drier consistency, the fresh and mechanical performances of RCC are distinctly different from conventional concretes. The objectives of this work were three fold. The first objective was to explain the anomalous behavior of fresh RCC in terms of different components of workability. The second objective was to explain the mechanisms of strength development in terms of paste quality and quantity. The final objective was to explain the roles of different chemical admixtures (water reducers, retarders, rheology modifiers, air entraining agents, dry cast products, etc.) in influencing the workability and strength performances of RCC. It is observed that the relative volume and quality of the paste, in addition to combined aggregate grading, affect the overall workability of mixtures. The workability of concrete is characterized in terms of cohesion, angle of internal friction, air content, compactibility, and consistency retention over time. Air content plays a decisive role in influencing the performances of concrete. The resulting mobility of the paste influences the compactibility, which in-turn decides the strength as well. RCC shows anomalous behavior in terms of mechanical strength as shown by deviations in the Abrams' law. It is argued that water-binder ratio is not a comprehensive parameter to explain the overall concrete behavior and trends. A significant body of knowledge is added in terms of the use of chemical admixtures in RCC. Atypical behaviors in influencing the fresh and hardened properties are explained by offering plausible mechanisms in terms of binder-admixture interactions. Irrespective of the admixture type, higher than normal dosages are required for RCC. Keywords: roller compacted concrete, aggregates, paste quality, paste quantity, water/binder, aggregate/binder, air, workability

  8. Entrainment of stratospheric air and Asian pollution by the convective boundary layer in the southwestern U.S.

    NASA Astrophysics Data System (ADS)

    Langford, A. O.; Alvarez, R. J.; Brioude, J.; Fine, R.; Gustin, M. S.; Lin, M. Y.; Marchbanks, R. D.; Pierce, R. B.; Sandberg, S. P.; Senff, C. J.; Weickmann, A. M.; Williams, E. J.

    2017-01-01

    A series of deep stratospheric intrusions in late May 2013 increased the daily maximum 8 h surface ozone (O3) concentrations to more than 70 parts per billion by volume (ppbv) at rural and urban surface monitors in California and Nevada. This influx of ozone-rich lower stratospheric air and entrained Asian pollution persisted for more than 5 days and contributed to exceedances of the 2008 8 h national ambient air quality standard of 75 ppbv on 21 and 25 May in Clark County, NV. Exceedances would also have occurred on 22 and 23 May had the new standard of 70 ppbv been in effect. In this paper, we examine this episode using lidar measurements from a high-elevation site on Angel Peak, NV, and surface measurements from NOAA, the Clark County, Nevada Department of Air Quality, the Environmental Protection Agency Air Quality System, and the Nevada Rural Ozone Initiative. These measurements, together with analyses from the National Centers for Environmental Prediction/North American Regional Reanalysis; NOAA Geophysical Fluid Dynamics Laboratory AM3 model; NOAA National Environmental Satellite, Data, and Information Service Real-time Air Quality Modeling System; and FLEXPART models, show that the exceedances followed entrainment of 20 to 40 ppbv of lower stratospheric ozone mingled with another 0 to 10 ppbv of ozone transported from Asia by the unusually deep convective boundary layers above the Mojave desert. Our analysis suggests that this vigorous mixing can affect both high and low elevations and help explain the springtime ozone maximum in the southwestern U.S.

  9. Effect of an entrained air bubble on the acoustics of an ink channel.

    PubMed

    Jeurissen, Roger; de Jong, Jos; Reinten, Hans; van den Berg, Marc; Wijshoff, Herman; Versluis, Michel; Lohse, Detlef

    2008-05-01

    Piezo-driven inkjet systems are very sensitive to air entrapment. The entrapped air bubbles grow by rectified diffusion in the ink channel and finally result in nozzle failure. Experimental results on the dynamics of fully grown air bubbles are presented. It is found that the bubble counteracts the pressure buildup necessary for the droplet formation. The channel acoustics and the air bubble dynamics are modeled. For good agreement with the experimental data it is crucial to include the confined geometry into the model: The air bubble acts back on the acoustic field in the channel and thus on its own dynamics. This two-way coupling limits further bubble growth and thus determines the saturation size of the bubble.

  10. Numerical investigation of a turbulent hydraulic jump: Interface statistics and air entrainment

    NASA Astrophysics Data System (ADS)

    Mortazavi, Milad; Kim, Dokyun; Mani, Ali; Moin, Parviz

    2011-11-01

    The objective of this study is to develop an understanding of formation of bubbles due to turbulence/interface interactions and nonlinear surface wave phenomena. As a model problem a statistically stationary turbulent hydraulic jump has been considered. Turbulent hydraulic jump with an inflow Froude number of 2 and Reynolds number of 88000-based on inflow height-has been numerically simulated. Based on typical air- water systems, a density ratio of 831 has been selected for our calculations. A refined level-set method is employed to track the detailed dynamics of the interface evolution. Comparison of flow statistics with experimental results of Murzyn et al. (Int. J. Multiphase Flow, 2005) will be presented. The probability density function of principal curvatures of the air- water interface and curvature distribution patterns in the chaotic regions are investigated. The importance of liquid impact events in bubble generation will be discussed. Supported by the Office of Naval Research, with Dr. Pat Purtell, program manager.

  11. Airborne & SAR Synergy Reveals the 3D Structure of Air Bubble Entrainment in Internal Waves and Frontal Zones

    NASA Astrophysics Data System (ADS)

    da Silva, J. C. B.; Magalhaes, J. M.; Batista, M.; Gostiaux, L.; Gerkema, T.; New, A. L.

    2013-03-01

    Internal waves are now recognised as an important mixing mechanism in the ocean. Mixing at the base of the mixed layer and in the seasonal thermocline affects the properties of those water masses which define the exchange of heat and freshwater between the atmosphere and ocean. The breaking of Internal Solitary Waves (ISWs) contributes significantly to turbulent mixing in the near-surface layers, through the continual triggering of instabilities as they propagate and shoal towards the coast or shallow topography. Here we report some results of the EU funded project A.NEW (Airborne observations of Nonlinear Evolution of internal Waves generated by internal tidal beams). The airborne capabilities to observe small scale structure of breaking internal waves in the near-shore zone has been demonstrated in recent studies (e.g. Marmorino et al., 2008). In particular, sea surface thermal signatures of shoaling ISWs have revealed the turbulent character of these structures in the form of surface “boil” features. On the other hand, some in situ measurements of internal waves and theoretical work suggest subsurface entrainment of air bubbles in the convergence zones of ISWs (Serebryany and Galybin, 2009; Grimshaw et al., 2010). We conducted airborne remote sensing observations in the coastal zone off the west Iberian Peninsula (off Lisbon, Portugal) using high resolution imaging sensors: LiDAR (Light Detection And Ranging), hyperspectral cameras (Eagle and Hawk) and thermal infrared imaging (TABI-320). These measurements were planned based on previous SAR observations in the region, which included also near-real time SAR overpasses (ESA project AOPT-2423 and TerraSAR-X project OCE-0056). The airborne measurements were conducted from board the NERC (Natural Environmental Research Centre) Do 228 aircraft in the summer of 2010. The TABI-320 thermal airborne broadband imager can distinguish temperature differences as small as one-twentieth of a degree and operates in the

  12. Performance of rice husk ash produced using a new technology as a mineral admixture in concrete

    SciTech Connect

    Nehdi, M.; Duquette, J.; El Damatty, A

    2003-08-01

    This article investigates the use of a new technique for the controlled combustion of Egyptian rice husk to mitigate the environmental concerns associated with its uncontrolled burning and provide a supplementary cementing material for the local construction industry. The reactor used provides efficient combustion of rice husk in a short residency time via the suspension of processed particles by jets of a process air stream that is forced though stationary angled blades at high velocity. Investigations on the rice husk ash (RHA) thus produced included oxide analysis, X-ray diffraction, carbon content, grindability, water demand, pozzolanic activity index, surface area, and particle size distribution measurements. In addition, concrete mixtures incorporating various proportions of silica fume (SF) and Egyptian RHA (EG-RHA) produced at different combustion temperatures were made and compared. The workability, superplasticizer and air-entraining admixture requirements, and compressive strength at various ages of these concrete mixtures were evaluated, and their resistance to rapid chloride penetrability and deicing salt surface scaling were examined. Test results indicate that contrary to RHA produced using existing technology, the superplasticizer and air-entraining agent requirements did not increase drastically when the RHA developed in this study was used. Compressive strengths achieved by concrete mixtures incorporating the new RHA exceeded those of concretes containing similar proportions of SF. The resistance to surface scaling of RHA concrete was better than that of concrete containing similar proportions of SF. While the chloride penetrability was substantially decreased by RHA, it remained slightly higher than that achieved by SF concrete.

  13. ENTRAINMENT BY LIGAMENT-CONTROLLED EFFERVESCENT ATOMIZER-PRODUCED SPRAYS

    EPA Science Inventory

    Entrainment of ambient air into sprays produced by a new type of effervescent atomizer is reported. Entrainment data were obtained using a device similar to that described by Ricou & Spalding (1961). Entrainment data were analyzed using the model of Bush & Sojka (1994), in concer...

  14. Modeling Continuous Admixture Using Admixture-Induced Linkage Disequilibrium.

    PubMed

    Zhou, Ying; Qiu, Hongxiang; Xu, Shuhua

    2017-02-23

    Recent migrations and inter-ethnic mating of long isolated populations have resulted in genetically admixed populations. To understand the complex population admixture process, which is critical to both evolutionary and medical studies, here we used admixture induced linkage disequilibrium (LD) to infer continuous admixture events, which is common for most existing admixed populations. Unlike previous studies, we expanded the typical continuous admixture model to a more general scenario with isolation after a certain duration of continuous gene flow. Based on the new models, we developed a method, CAMer, to infer the admixture history considering continuous and complex demographic process of gene flow between populations. We evaluated the performance of CAMer by computer simulation and further applied our method to real data analysis of a few well-known admixed populations.

  15. Modeling Continuous Admixture Using Admixture-Induced Linkage Disequilibrium

    PubMed Central

    Zhou, Ying; Qiu, Hongxiang; Xu, Shuhua

    2017-01-01

    Recent migrations and inter-ethnic mating of long isolated populations have resulted in genetically admixed populations. To understand the complex population admixture process, which is critical to both evolutionary and medical studies, here we used admixture induced linkage disequilibrium (LD) to infer continuous admixture events, which is common for most existing admixed populations. Unlike previous studies, we expanded the typical continuous admixture model to a more general scenario with isolation after a certain duration of continuous gene flow. Based on the new models, we developed a method, CAMer, to infer the admixture history considering continuous and complex demographic process of gene flow between populations. We evaluated the performance of CAMer by computer simulation and further applied our method to real data analysis of a few well-known admixed populations. PMID:28230170

  16. Non-dispersive atomic-fluorescence spectrometry of trace amounts of bismuth by introduction of its gaseous hydride into a premixed argon (entrained air)-hydrogen flame.

    PubMed

    Kobayashi, S; Nakahara, T; Musha, S

    1979-10-01

    A method has been developed for the determination of bismuth by generation of its gaseous hydride and introduction of the hydride into a premixed argon (entrained air)-hydrogen flame, the atomic-fluorescence lines from which are all detected by use of a non-dispersive system. The detection limit is 5 pg/ml, or 0.1 ng of bismuth, but the reagent blank found in a 20-ml sample volume was approximately 2 ng of bismuth. Analytical working curves obtained by measuring peak-heights and integrated peak-areas of the signals are linear over a range of about four orders of magnitude from the detection limit. Perchloric, phosphoric and sulphuric acids up to 2.0M concentration give no interference, but nitric acid gives slight depression of the signal. The presence of silver, gold, nickel, palladium, platinum, selenium and tellurium in 1000-fold ratio to bismuth causes pronounced depression of the signal, whereas mercury and tin slightly enhance the atomic-fluorescence signal. The method has been applied to the determination of bismuth in aluminium-base alloys and sulphide ores with use of the standard additions method. The results are in good agreement with those obtained by flame atomic-absorption spectrometry and optical emission spectrometry with an inductively coupled plasma.

  17. Mesler entrainment in alcohols

    NASA Astrophysics Data System (ADS)

    Sundberg-Anderson, R. K.; Saylor, J. R.

    2014-01-01

    Mesler entrainment has been studied extensively in water and, more recently, in silicone oils. Studies of Mesler entrainment in liquids other than these are rare. The extant experimental results in water show significant irreproducibility both in the qualitative characteristics of Mesler entrainment and in the existence or nonexistence of Mesler entrainment when, for example, drops of the same diameter are released from the same height. In contrast, in silicone oils, Mesler entrainment is highly reproducible, essentially occurring either all of the time, or none of the time for a given set of conditions. A goal of the present work was to determine which of these two behaviors is the "standard" behavior—that is, to determine whether Mesler entrainment is typically repeatable or not. The experimental studies presented herein were conducted in three liquids that have not been the subject of detailed investigation to date: ethyl alcohol, isopropyl alcohol, and methyl alcohol. All of these alcohol results showed behavior very similar to that observed in silicone oils, suggesting that Mesler entrainment is typically repeatable and that water is an atypical fluid, causing irreproducible results. Additionally, we present data obtained in silicone oils and combine that with the alcohol data in an attempt to develop a combination of dimensionless groups that predicts the boundaries within which Mesler entrainment occurs for liquids other than water.

  18. Cloud-Top Entrainment in Stratocumulus Clouds

    NASA Astrophysics Data System (ADS)

    Mellado, Juan Pedro

    2017-01-01

    Cloud entrainment, the mixing between cloudy and clear air at the boundary of clouds, constitutes one paradigm for the relevance of small scales in the Earth system: By regulating cloud lifetimes, meter- and submeter-scale processes at cloud boundaries can influence planetary-scale properties. Understanding cloud entrainment is difficult given the complexity and diversity of the associated phenomena, which include turbulence entrainment within a stratified medium, convective instabilities driven by radiative and evaporative cooling, shear instabilities, and cloud microphysics. Obtaining accurate data at the required small scales is also challenging, for both simulations and measurements. During the past few decades, however, high-resolution simulations and measurements have greatly advanced our understanding of the main mechanisms controlling cloud entrainment. This article reviews some of these advances, focusing on stratocumulus clouds, and indicates remaining challenges.

  19. Entraining gravity currents

    NASA Astrophysics Data System (ADS)

    Johnson, Chris; Hogg, Andrew

    2012-11-01

    Large-scale gravity currents, such as those formed when industrial effluent is discharged at sea, are greatly affected by the entrainment and mixing of ambient fluid into the current, which both dilutes the flow and causes an effective drag between the current and ambient. We study these currents theoretically by combining a shallow-water model for gravity currents flowing under a deep ambient with an empirical model for entrainment, and seek long-time similarity solutions of this model. We find that the dependence of entrainment on the bulk Richardson number plays a crucial role in the current dynamics, and results in entrainment occurring mainly in a region close to the flow front, reminiscent of the entraining current `head' observed in natural flows. The long-time solution of an entraining lock-release current is a similarity solution of the second kind, in which the current grows as a power of time that is dependent on the form of the entrainment model, approximately as t 0 . 44. The structure of a current driven by a constant buoyancy flux is quite different, with the current length growing as t 4 / 5. Scaling arguments suggest that these solutions are reached only at very long times, and so may be attained in large natural flows, but not in small-scale experiments.

  20. The art of entrainment.

    PubMed

    Roenneberg, Till; Daan, Serge; Merrow, Martha

    2003-06-01

    The circadian system actively synchronizes the temporal sequence of biological functions with the environment. The oscillatory behavior of the system ensures that entrainment is not passive or driven and therefore allows for great plasticity and adaptive potential. With the tools at hand, we now can concentrate on the most important circadian question: How is the complex task of entrainment achieved by anatomical, cellular, and molecular components? Understanding entrainment is equal to understanding the circadian system. The results of this basic research will help us to understand temporal ecology and will allow us to improve conditions for humans in industrialized societies.

  1. Investigation of Proprietary Admixtures. Report 2. 1977-1978 Tests.

    DTIC Science & Technology

    1980-01-01

    proprietary admixtures obtained for this investigation were described as follows: a. SM-10-77 is a condensation product of melamine and formaldehyde . b. SM-1...78 is a sulfonated naphthalene formaldehyde condensate. c. SM-5-79 is an aqueous solution of a modified naphthalene sulfonate . Mixtures 9. Air

  2. Increasing jet entrainment, mixing and spreading

    DOEpatents

    Farrington, Robert B.

    1994-01-01

    A free jet of air is disturbed at a frequency that substantially matches natural turbulences in the free jet to increase the entrainment, mixing, and spreading of air by the free jet, for example in a room or other enclosure. The disturbances are created by pulsing the flow of air that creates the free jet at the desired frequency. Such pulsing of the flow of air can be accomplished by sequentially occluding and opening a duct that confines and directs the flow of air, such as by rotating a disk on an axis transverse to the flow of air in the duct.

  3. Increasing jet entrainment, mixing and spreading

    DOEpatents

    Farrington, R.B.

    1994-08-16

    A free jet of air is disturbed at a frequency that substantially matches natural turbulences in the free jet to increase the entrainment, mixing, and spreading of air by the free jet, for example in a room or other enclosure. The disturbances are created by pulsing the flow of air that creates the free jet at the desired frequency. Such pulsing of the flow of air can be accomplished by sequentially occluding and opening a duct that confines and directs the flow of air, such as by rotating a disk on an axis transverse to the flow of air in the duct. 11 figs.

  4. An observational study of entrainment rate in deep convection

    DOE PAGES

    Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; ...

    2015-09-22

    This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal,more » gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.« less

  5. An observational study of entrainment rate in deep convection

    SciTech Connect

    Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; Zhang, Guang Jun; Liu, Yangang

    2015-09-22

    This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal, gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.

  6. New advanced shotcrete admixtures: Internal curing

    SciTech Connect

    Melbye, T.A.

    1995-12-31

    Tunnels and other underground construction projects have one of the worst curing conditions due to the ventilation that blows continuously dry (cold or hot) air into the tunnel. It can be compared with concrete exposed to a windy area. One would think that tunnels have ideal curing conditions with high humidity (water leakage), no wind and no sun exposure. However, this is not the case. MBT has developed a new system for more efficient and secure curing of wet shotcrete, repair mortars as well as concrete. Internal curing means that a special admixture is added to the concrete/mortar during batching as a normal admixture. This admixture produces an internal barrier in the shotcrete/concrete which secures safer hydration and better chemical resistance than the application of conventional curing agents. The benefits resulting from the new technology are impressive: The time consuming application and, in the case of various shotcrete layers, removal of curing agents are no longer necessary; curing is guaranteed from the very beginning of hydration; and there is no negative influence on bonding between layers. As a consequence of th is optimum curing effect, all other shotcrete characteristics are improved: density, final strengths, freeze/thaw and chemical resistances, watertightness, less cracking and shrinkage. In addition, MEYCO TCC 735 also improves pumpability and workability of shotcrete, even with low-grade aggregates. It particularly improves the pumpability of steel fiber reinforced shotcrete mixes. In combination with the MEYCO TCC system it contrives to even increase the beneficial effects of the slump killing system by further improving fiber orientation, reducing fiber rebound and thus raising toughness values.

  7. Entrainment by Lazy Plumes

    NASA Astrophysics Data System (ADS)

    Kaye, Nigel; Hunt, Gary

    2004-11-01

    We consider plumes with source conditions that have a net momentum flux deficit compared to a pure plume - so called lazy plumes. We examine both the case of constant buoyancy flux and buoyancy flux linearly increasing with height. By re-casting the plume conservation equations (Morton, Taylor & Turner 1956) for a constant entrainment coefficient ((α)) in terms of the plume radius (β) and the dimensionless parameter (Γ=frac5Q^2 B4α M^5/2) we show that the far-field flow in a plume with a linear internal buoyancy flux gain is a constant velocity lazy plume with reduced entrainment and radial growth rate. For highly lazy source conditions we derive first-order approximate solutions which indicate a region of zero entrainment near the source. These phenomena have previously been observed, however, it has often been assumed that reduced entrainment implies a reduced (α). We demonstrate that a constant (α) formulation is able to capture the behaviour of these reduced entrainment flows. Morton, B. R., Taylor, G. I. & Turner, J. S. (1956), Turbulent gravitational convection from maintained and instantaneous sources.', Proc. Roy. Soc. 234, 1-23.

  8. Topological Signatures for Population Admixture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Topological Signatures for Population AdmixtureDeniz Yorukoglu1, Filippo Utro1, David Kuhn2, Saugata Basu3 and Laxmi Parida1* Abstract Background: As populations with multi-linear transmission (i.e., mixing of genetic material from two parents, say) evolve over generations, the genetic transmission...

  9. Ancient Admixture in Human History

    PubMed Central

    Patterson, Nick; Moorjani, Priya; Luo, Yontao; Mallick, Swapan; Rohland, Nadin; Zhan, Yiping; Genschoreck, Teri; Webster, Teresa; Reich, David

    2012-01-01

    Population mixture is an important process in biology. We present a suite of methods for learning about population mixtures, implemented in a software package called ADMIXTOOLS, that support formal tests for whether mixture occurred and make it possible to infer proportions and dates of mixture. We also describe the development of a new single nucleotide polymorphism (SNP) array consisting of 629,433 sites with clearly documented ascertainment that was specifically designed for population genetic analyses and that we genotyped in 934 individuals from 53 diverse populations. To illustrate the methods, we give a number of examples that provide new insights about the history of human admixture. The most striking finding is a clear signal of admixture into northern Europe, with one ancestral population related to present-day Basques and Sardinians and the other related to present-day populations of northeast Asia and the Americas. This likely reflects a history of admixture between Neolithic migrants and the indigenous Mesolithic population of Europe, consistent with recent analyses of ancient bones from Sweden and the sequencing of the genome of the Tyrolean “Iceman.” PMID:22960212

  10. Premixed intravenous admixtures: a positive development for hospital pharmacy.

    PubMed

    Lee, H E

    1983-06-01

    The development of premixed intravenous admixtures is reviewed in a historical context, and its effects on hospital pharmacy practice are discussed. As pharmaceutical manufacturers introduce more i.v. medications in ready-to-use containers, the same complaints that were voiced by pharmacists about unit dose packaging and ready-to-dispense tablets and capsules are being aired. But premixed i.v. admixtures are a logical extension of the basic unit dose principle of providing a readily identifiable and ready-to-administer dose. The time and cost savings these products offer are needed in hospital pharmacies. Some of the disadvantages of these products--including storage and freezer space and multiplicity of administration systems--are overcome by proper planning and education of personnel. If fewer personnel are now needed to prepare i.v. admixtures, then those personnel should be used to improve patient care in other ways. The use of premixed i.v. admixtures is a positive technological advance in drug packaging. Its advantages outweight its disadvantages, and it will soon be become the universally accepted form of i.v. drug packaging.

  11. The macroscopic entrainment processes of simulated cumulus ensemble. Part I: Entrainment sources

    SciTech Connect

    Lin, Chichung; Arakawa, A.

    1997-04-15

    Parameterization of cumulus convection requires a model that describes the statistical properties of a cumulus ensemble under given large-scale conditions. Such a model is called a cloud model for cumulus parameterization (CMCP). It would be best if the development of a CMCP were guided by synchronous observations covering a population of clouds. Unfortunately, observations for cumulus clouds are usually confined to individual clouds, leaving many uncertainties in designing a CMCP. In an attempt to improve the formulation of entrainment effects in a CMCP, the data simulated by a two-dimensional cloud-resolving model are used to investigate sources of entrainment into cumulus clouds. The authors first plot the Paluch diagram using the data from a nonprecipitating experiment. It is found that typical patterns on the Paluch diagram obtained by observational studies can be reproduced using the simulated data and can be interpreted in ways other than two-point mixing. The authors further examine entrainment sources through extensive trajectory analysis using the data from a precipitating experiment. They find that cloud air parcels at one level usually originate from locations of various heights, indicating a continuous series of entrainment events occurring throughout the cloud depth. However, the authors do not find a cloud air parcel decending more than several hundred meters. Penetrative downdrafts produced by mixing between cloud air and entrained air are not observed in the cases simulated. It seems that, as far as tropical deep convection is concerned, ignoring the contribution from descendent cloud air in a CMCP is an acceptable simplification. 52 refs., 14 figs.

  12. The macroscopic entrainment processes of simulated cumulus ensemble. Part II: Testing the entraining-plume model

    SciTech Connect

    Lin, Chichung; Arakawa, Akio

    1997-04-15

    According to Part I of this paper, is seems that ignoring the contribution from descendent cloud air in a cloud model for cumulus parameterization (CMCP), such as the spectral cumulus ensemble model in the Arakawa-Schubert parameterization, is an acceptable simplification for tropical deep convection. Since each subensemble in the spectral cumulus ensemble model is formally analogous to an entraining plume, the latter is examined using the simulated data from a cloud-resolving model (CRM). The authors first follow the analysis procedure of Warner. With the data from a nonprecipitating experiment, the authors show that the entraining-plume model cannot simultaneously predict the mean liquid water profile and cloud top height of the clouds simulated by the CRM. However, the mean properties of active elements of clouds, which are characterized by strong updrafts, can be described by an entraining plume of similar top height. With data from a precipitating experiment, the authors examine the spectral cumulus ensemble model using the Paluch diagram. It is found that the spectral cumulus ensemble model appears adequate if different types of clouds in the spectrum are interpreted as subcloud elements with different entrainment characteristics. The resolved internal structure of clouds can thus be viewed as a manifestation of a cloud spectrum. To further investigate whether the fractional rate of entrainment is an appropriate parameter for characterizing cloud types in the spectral cumulus ensemble model, the authors stratify the simulated saturated updrafts (subcloud elements) into different types according to their eventual heights and calculate the cloud mass flux and mean moist static energy for each type. Entrainment characteristics are then inferred through the cloud mass flux and in-cloud moist static energy. It is found that different types of subcloud elements have distinguishable thermodynamic properties and entrainment characteristics. 16 refs., 8 figs.

  13. Admixtures

    DTIC Science & Technology

    1970-07-01

    dercc by the hariv.:oeristics of the cmicnt and ag-prgate and thcJr relative proportions, as vrell as by terporature, humidity, and curing ." In Aup-t...cemont to fortA ccnttious compotids. The most ca’-.i polzzbm in flyaush, the residue frcm burning po--dored coal In thhea-ml poier plants. Smns naturrI...doteraine V effect of tciupeaturc. on creep or concrt -te. Recent work in ]Dropa and Israel I surest that creep increeos as a result of teperature

  14. High-Resolution Entrainment in Stratocumulus During the POST Campaign

    NASA Astrophysics Data System (ADS)

    Gerber, H. E.

    2012-12-01

    In July and August of 2008 an NSF-supported field campaign called POST (Physics of Stratocumulus Top) was conducted off the California coast using the fully-instrumented Twin Otter aircraft from the Naval Post Graduate School. POST provided the first opportunity to closely co-locate on an aircraft high-rate and time synchronized microphysics (PVM; LWC and effective radius) and thermodynamics (UFT; Ultra-Fast Temperature) probes and a gust probe to produce measurements of entrainment fluxes and features over entrainment scales thought to be important in warm stratocumulus (Sc). This combination of probes permitted investigating the properties of individual entrained parcels Seventeen flights were conducted during POST in a quasi-Lagrangian fashion in largely unbroken stratocumulus. The horizontal fight path was adjusted to follow the mean air velocity in the Sc. The vertical flight path concentrated on flying between 100-m above and below the cloud-top interface; and some additional profiles were flown to various higher and lower levels where flux runs were made. This presentation describes the analysis of this unique and excellent data set including the following: The data permitted testing Lilly's classical theory for the entrainment velocity where its application requires strong jumps of temperature and moisture across the inversion located above cloud top, a linear flux of the entrained scalar below cloud top, and entrained parcels that descend. All flights showed Sc with wind shear and mixing at cloud top with some strong enough to dissipate the Sc. The relationship between shear and entrainment velocity is described. The pdf of the horizontal size of entrainment parcels vs entrainment flux is established for all flights to help in choosing grid-sizes for modeling. High -resolution in-cloud temperature and LWC measurements in entrained parcels reveal the relative importance of radiative cooling vs cooling by liquid water evaporation in causing buoyancy reversal

  15. Entrainment Characteristics for variable-angle plunging liquid jets

    NASA Astrophysics Data System (ADS)

    Deshpande, Suraj; Trujillo, Mario

    2013-11-01

    Simulations based on an algebraic VoF method are used to study the entrainment characteristics of a water jet plunging into a quiescent pool at angles ranging from 10 to 90 deg. with pool. Our previous study of shallow plunging jets (Deshpande et al. 2012) revealed a discernible frequency in the formation of large air cavities. This contrasts the well-documented chaotic entrainment at steeper inclinations, suggesting a different entrainment mechanism exists for shallow angles. Quantitatively, it is found that larger cavities and greater volume of entrained air occur at shallower angles (10, 12 deg.). A precursor to the formation of these large cavities is the presence of a stagnation region in the zone of impingement. Using a local mass and momentum balance, we show that this stagnation region deflects the incoming jet at wide angles producing large air cavities. Entrainment in shallow jets is similar to the initial impact of the jet with a pool, but it occurs periodically. The recurrence is a consequence of jet disruption by traveling waves on the pool. Qualitative analysis, supported with simulations, demonstrates linear scaling of entrainment period with Froude number.

  16. A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 2; Simulations of Cumulonimbus Clouds

    NASA Technical Reports Server (NTRS)

    Cohen, Charles

    1998-01-01

    Deep cumulonimbus clouds are simulated using a model that makes accurate diagnoses of entrainment and detrainment rates and of the properties of entrained and detrained air. Clouds generated by a variety of initial thermodynamic soundings are compared. In the simulations, updraft entrainment rates are large near and above cloud base, through the entire depth of the conditionally unstable layer. Stronger updrafts in a more unstable environment are better able to entrain relatively undisturbed environmental air, while weaker updrafts can entrain only air that has been modified by the clouds. When the maximum buoyancy is large, the updraft includes parcels with a wide range of buoyancies, while weaker clouds are more horizontally uniform. Strong downdrafts originate from levels at which updrafts detrain, and their mass flux depends on the mass flux of the updraft. The magnitude of mixing between cloud and environment, not the entrainment rate, varies inversely with the cloud radius. How much of the mixed air is entrained depends on the buoyancy.

  17. Entraining synthetic genetic oscillators

    NASA Astrophysics Data System (ADS)

    Wagemakers, Alexandre; Buldú, Javier M.; Sanjuán, Miguel A. F.; de Luis, Oscar; Izquierdo, Adriana; Coloma, Antonio

    2009-09-01

    We propose a new approach for synchronizing a population of synthetic genetic oscillators, which consists in the entrainment of a colony of repressilators by external modulation. We present a model where the repressilator dynamics is affected by periodic changes in temperature. We introduce an additional plasmid in the bacteria in order to correlate the temperature variations with the enhancement of the transcription rate of a certain gene. This can be done by introducing a promoter that is related to the heat shock response. This way, the expression of that gene results in a protein that enhances the overall oscillations. Numerical results show coherent oscillations of the population for a certain range of the external frequency, which is in turn related to the natural oscillation frequency of the modified repressilator. Finally we study the transient times related with the loss of synchronization and we discuss possible applications in biotechnology of large-scale production coupled to synchronization events induced by heat shock.

  18. Lidar measurements of the atmospheric entrainment zone and the potential temperature jump across the top of the mixed layer

    NASA Technical Reports Server (NTRS)

    Boers, R.; Eloranta, E. W.

    1986-01-01

    Lidar data of the atmospheric entrainment zone from six days of clear air convection obtained in central Illinois during July 1979 are presented. A new method to measure the potential temperature jump across the entrainment zone based on only one temperature sounding and continuous lidar measurements of the mixed layer height is developed. An almost linear dependence is found between the normalized entrainment rate and the normalized thickness of the entrainment zone.

  19. The influence of Kr, CO2, and iso-C4H8 admixtures on the time of the formation of a stable flame front in mixtures of natural gas and isobutylene with oxygen and hydrogen with air under initiation with a spark discharge

    NASA Astrophysics Data System (ADS)

    Rubtsov, N. M.; Seplyarskii, B. S.; Chernysh, V. I.; Tsvetkov, G. I.

    2010-05-01

    High-speed color filming was used to study laminar spherical flame propagation at the initial stage in preliminarily mixed stoichiometric mixtures of natural gas and isobutylene with oxygen containing krypton and carbon dioxide and in hydrogen-air mixtures at atmospheric pressure in a bomb with a constant volume. Under experimental conditions ( T 0 = 298 K, p 0 = 100 torr, spark discharge energy E 0 = 0.91 J), the dilution of mixtures with Kr and CO2 increased the time of formation of a stable flame front by more than 10 times. The introduction of a small chemically active admixture (1.2% isobutylene) into a stoichiometric mixture of hydrogen and air sharply increased the time of formation of a stable flame front, which was evidence of an important role played by the chemical mechanism of the reaction in the formation of the combustion field.

  20. Compounding times and contamination rates associated with the preparation of intravenous admixtures in three types of plastic containers.

    PubMed

    Allinson, R R; Stach, P E; Sherrin, T P; Latiolais, C J

    1979-04-01

    The compounding times and contamination rates associated with the preparation of admixtures in three different plastic i.v. containers of dextrose 5% in water were compared. The time required for a technician to prepare, in a laminar air flow hood by the needle and syringe technique, 120 admixtures in each of three different plastic i.v. containers was measured and recorded by two investigators. The 360 admixtures were tested within one hour of preparation for sterility using an enriched brain heart infusion broth. The total time required to compound the i.v. admixtures varied significantly with container design (p less than 0.01), preparation being fastest with the Accumed container, followed by the LifeCare then the Viaflex containers. The major contributing factors to increased compounding time were (1) removal of outer wrap, (2) swabbing of LifeCare and Viaflex medication ports with isopropyl alcohol pads and (3) freeing of the hangar flap from the Viaflex container. Sterility tests revealed no detectable contamination of any of the admixtures. Container design of plastic i.v. containers did influence the preparation time for admixtures but did not influence admixture sterility.

  1. Estimation of convective entrainment properties from a cloud-resolving model simulation during TWP-ICE

    NASA Astrophysics Data System (ADS)

    Zhang, Guang J.; Wu, Xiaoqing; Zeng, Xiping; Mitovski, Toni

    2016-10-01

    The fractional entrainment rate in convective clouds is an important parameter in current convective parameterization schemes of climate models. In this paper, it is estimated using a 1-km-resolution cloud-resolving model (CRM) simulation of convective clouds from TWP-ICE (the Tropical Warm Pool-International Cloud Experiment). The clouds are divided into different types, characterized by cloud-top heights. The entrainment rates and moist static energy that is entrained or detrained are determined by analyzing the budget of moist static energy for each cloud type. Results show that the entrained air is a mixture of approximately equal amount of cloud air and environmental air, and the detrained air is a mixture of ~80 % of cloud air and 20 % of the air with saturation moist static energy at the environmental temperature. After taking into account the difference in moist static energy between the entrained air and the mean environment, the estimated fractional entrainment rate is much larger than those used in current convective parameterization schemes. High-resolution (100 m) large-eddy simulation of TWP-ICE convection was also analyzed to support the CRM results. It is shown that the characteristics of entrainment rates estimated using both the high-resolution data and CRM-resolution coarse-grained data are similar. For each cloud category, the entrainment rate is high near cloud base and top, but low in the middle of clouds. The entrainment rates are best fitted to the inverse of in-cloud vertical velocity by a second order polynomial.

  2. Distinguishing Recent Admixture from Ancestral Population Structure

    PubMed Central

    Slatkin, Montgomery

    2017-01-01

    We develop and test two methods for distinguishing between recent admixture and ancestral population structure as explanations for greater similarity of one of two populations to an outgroup population. This problem arose when Neanderthals were found to be slightly more similar to nonAfrican than to African populations. The excess similarity is consistent with both recent admixture from Neanderthals into the ancestors of nonAfricans and subdivision in the ancestral population. Although later studies showed that there had been recent admixture, distinguishing between these two classes of models will be important in other situations, particularly when high-coverage genomes cannot be obtained for all populations. One of our two methods is based on the properties of the doubly conditioned frequency spectrum combined with the unconditional frequency spectrum. This method does not require a linkage map and can be used when there is relatively low coverage. The second method uses the extent of linkage disequilibrium among closely linked markers. PMID:28186554

  3. Estimating ethnic admixture from pedigree data.

    PubMed

    Sinsheimer, Janet S; Plaisier, Christopher L; Huertas-Vazquez, Adriana; Aguilar-Salinas, Carlos; Tusie-Luna, Teresa; Pajukanta, Päivi; Lange, Kenneth

    2008-03-01

    This paper introduces a likelihood method of estimating ethnic admixture that uses individuals, pedigrees, or a combination of individuals and pedigrees. For each founder of a pedigree, admixture proportions are calculated by conditioning on the pedigree-wide genotypes at all ancestry-informative markers. These estimates are then propagated down the pedigree to the nonfounders by a simple averaging process. The large-sample standard errors of the founders' proportions can be similarly transformed into standard errors for the admixture proportions of the descendants. These standard errors are smaller than the corresponding standard errors when each individual is treated independently. Both hard and soft information on a founder's ancestry can be accommodated in this scheme, which has been implemented in the genetic software package Mendel. The utility of the method is demonstrated on simulated data and a real data example involving Mexican families of mixed Amerindian and Spanish ancestry.

  4. Admixture in Mexico City: implications for admixture mapping of type 2 diabetes genetic risk factors.

    PubMed

    Martinez-Marignac, Veronica L; Valladares, Adan; Cameron, Emily; Chan, Andrea; Perera, Arjuna; Globus-Goldberg, Rachel; Wacher, Niels; Kumate, Jesús; McKeigue, Paul; O'Donnell, David; Shriver, Mark D; Cruz, Miguel; Parra, Esteban J

    2007-02-01

    Admixture mapping is a recently developed method for identifying genetic risk factors involved in complex traits or diseases showing prevalence differences between major continental groups. Type 2 diabetes (T2D) is at least twice as prevalent in Native American populations as in populations of European ancestry, so admixture mapping is well suited to study the genetic basis of this complex disease. We have characterized the admixture proportions in a sample of 286 unrelated T2D patients and 275 controls from Mexico City and we discuss the implications of the results for admixture mapping studies. Admixture proportions were estimated using 69 autosomal ancestry-informative markers (AIMs). Maternal and paternal contributions were estimated from geographically informative mtDNA and Y-specific polymorphisms. The average proportions of Native American, European and, West African admixture were estimated as 65, 30, and 5%, respectively. The contributions of Native American ancestors to maternal and paternal lineages were estimated as 90 and 40%, respectively. In a logistic model with higher educational status as dependent variable, the odds ratio for higher educational status associated with an increase from 0 to 1 in European admixture proportions was 9.4 (95%, credible interval 3.8-22.6). This association of socioeconomic status with individual admixture proportion shows that genetic stratification in this population is paralleled, and possibly maintained, by socioeconomic stratification. The effective number of generations back to unadmixed ancestors was 6.7 (95% CI 5.7-8.0), from which we can estimate that genome-wide admixture mapping will require typing about 1,400 evenly distributed AIMs to localize genes underlying disease risk between populations of European and Native American ancestry. Sample sizes of about 2,000 cases will be required to detect any locus that contributes an ancestry risk ratio of at least 1.5.

  5. Cold Weather Admixture Systems Demonstration at Fort Wainwright, Alaska

    DTIC Science & Technology

    2010-08-01

    oz/cwt. Rheocrete® CNI is a corrosion inhibiting admixture (BASF 2007b). While corrosion inhibitors are used to protect embedded steel members...Washington, DC 20314-1000 ERDC/CRREL TR-10-6 ii Abstract: Cold Weather Admixture Systems (CWAS) is a new approach to cold weather concreting that...incorporates suites of commercially avail- able chemical admixtures in concrete mixes. When used in combination, these admixtures depress the freezing

  6. Effect of particle entrainment on the runout of pyroclastic density currents

    NASA Astrophysics Data System (ADS)

    Fauria, Kristen E.; Manga, Michael; Chamberlain, Michael

    2016-09-01

    Pyroclastic density currents (PDCs) can erode soil and bedrock, yet we currently lack a mechanistic understanding of particle entrainment that can be incorporated into models and used to understand how PDC bulking affects runout. Here we quantify how particle splash, the ejection of particles due to impact by a projectile, entrains particles into dilute PDCs. We use scaled laboratory experiments to measure the mass of sand ejected by impacts of pumice, wood, and nylon spheres. We then derive an expression for particle splash that we validate with our experimental results as well as results from seven other studies. We find that the number of ejected particles scales with the kinetic energy of the impactor and the depth of the crater generated by the impactor. Last, we use a one-dimensional model of a dilute, compressible density current—where runout distance is controlled by air entrainment and particle exchange with the substrate—to examine how particle entrainment by splash affects PDC density and runout. Splash-driven particle entrainment can increase the runout distance of dilute PDCs by an order of magnitude. Furthermore, the temperature of entrained particles greatly affects runout and PDCs that entrain ambient temperature particles runout farther than those that entrain hot particles. Particle entrainment by splash therefore not only increases the runout of dilute PDCs but demonstrates that the temperature and composition of the lower boundary have consequences for PDC density, temperature, runout, hazards and depositional record.

  7. Laminar Plunging Jets - Interfacial Rupture and Inception of Entrainment

    NASA Astrophysics Data System (ADS)

    Kishore, Aravind

    Interfacial rupture and entrainment are commonly observed, e.g., air bubbles within a container being filled with water from a faucet. The example involves a liquid jet (density, rho, and viscosity, η) plunging into a receiving pool of liquid. Below a critical liquid-jet velocity, the interface develops a cusp-like shape within the receiving pool. The cusp becomes sharper with increasing liquid-jet velocity, and at a critical velocity ( Vc), the interface between the liquid and the surrounding fluid (density, rho0, and viscosity, η0) ruptures. Interfacial tension (sigma) can no longer preserve the integrity of the interface between the two immiscible fluids, and the plunging jet drags/entrains surrounding fluid into the receiving pool. Subsequently, the entrained fluid breaks up into bubbles within the receiving pool. The focus of this dissertation is the numerical prediction of the critical entrainment inception velocities for laminar plunging jets using the Volume-Of-Fluid (VOF) method, a Computational Fluid Dynamics (CFD) method to simulate multi-fluid flows. Canonical to bottle-filling operations in the industry is the plunging-jet configuration -- the liquid jet issues from a nozzle and plunges into a container filled with liquid. Simulations of this configuration require capturing flow phenomena over a large range of length scales (4 orders of magnitude). Results show severe under-prediction of critical entrainment velocities when the maximum resolution is insufficient to capture the sharpening, and eventual rupture, of the interfacial cusp. Higher resolutions resulted in computational meshes with prohibitively large number of cells, and a drastic reduction in time-step values. Experimental results in the literature suggest at least a 100-fold increase in the smallest length scale when the entrained fluid is a liquid instead of air. This narrows the range of length scales in the problem. We exploit the experimental correlation between critical capillary

  8. Investigation of the Entrainment Phenomenon Using a Scaling Approach

    NASA Astrophysics Data System (ADS)

    Kishore, Aravind; Ghia, Urmila

    2014-11-01

    Air entrainment is a commonly observed phenomenon; we see it when filling a glass with water from a faucet, in the frothing of the ocean surface, in white water rapids, etc. The focus of our work is the numerical simulation of the entrainment phenomenon associated with laminar plunging jets. With increasing jet velocity, the interfacial cusp formed between the jet and the liquid pool becomes sharper. At a critical jet velocity, entrainment inception occurs, i.e., the interfacial cusp breaks, the interface ruptures, and air is pulled into the liquid pool. We conduct two-fluid simulations using the Volume-Of-Fluid (VOF) methodology. The large range of length scales in the flow presents a major computational challenge. We postulate an approach based on scaling of the underlying physics and this helps alleviate the constraints that the physics poses on the numerical method. The approach is validated using a simple flow configuration - a cylinder rotating at an interface between two fluids. Our simulations capture the sharpening of the interfacial cusp, and the sudden rupture of the interface. The predicted critical entrainment velocities are within 1% of experimental data, thereby providing confidence in the approach. This work was supported by the UC Simulation Center at the University of Cincinnati.

  9. The Stochastic Parcel Model: A deterministic parameterization of stochastically entraining convection

    NASA Astrophysics Data System (ADS)

    Romps, David M.

    2016-03-01

    Convective entrainment is a process that is poorly represented in existing convective parameterizations. By many estimates, convective entrainment is the leading source of error in global climate models. As a potential remedy, an Eulerian implementation of the Stochastic Parcel Model (SPM) is presented here as a convective parameterization that treats entrainment in a physically realistic and computationally efficient way. Drawing on evidence that convecting clouds comprise air parcels subject to Poisson-process entrainment events, the SPM calculates the deterministic limit of an infinite number of such parcels. For computational efficiency, the SPM groups parcels at each height by their purity, which is a measure of their total entrainment up to that height. This reduces the calculation of convective fluxes to a sequence of matrix multiplications. The SPM is implemented in a single-column model and compared with a large-eddy simulation of deep convection.

  10. Entrainment by the jet in HH 47

    NASA Technical Reports Server (NTRS)

    Raymond, John C.; Morse, Jon A.; Hartigan, P.; Curiel, S.; Heathcote, Steve

    1994-01-01

    Fabry-Perot images of the HH 47 optical jet show that the velocity decreases from the center toward the edges which is interpreted as evidence for entrainment. Those images can be used to investigate the rate of entrainment required to account for the observed luminosity. Entrainment along the jet can account for only small fractions of the jet mass and the molecular outflow seen in CO. We compare the density, excitation, and velocity structure of the jet with the predictions of viscous entrainment models and models of entrainment by expulsion of jet material by internal shocks, and find that either type of model can explain the general features.

  11. Entrainment in electrohydrodynamic heat pipes

    NASA Technical Reports Server (NTRS)

    Jones, T. B.; Perry, M. P.

    1972-01-01

    A theoretical analysis for predicting the onset of the Kelvin-Helmholtz instability is reported. The model for the analysis is described, and the derived stability criterion are given. It is concluded that surface tension plays a role in the entrainment limit of electro hydrodynamic heat pipes. The surface of the liquid in an EHD flow structure is open, with no restriction placed on the wavenumbers of perturbations.

  12. Timescales of Massive Human Entrainment

    PubMed Central

    Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

    2015-01-01

    The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment—as expressed by the content and patterns of hundreds of thousands of messages on Twitter—during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5–10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment. PMID:25880357

  13. Localizing ventricular tachycardia through entrainment.

    PubMed

    Kuo, C T; Luqman, N; Lin, K H; Chiang, C W

    2000-12-01

    Area(s) of slow conduction are thought to be present within the reentry circuit of most clinically important ventricular tachycardia (VT). To prevent recurrence after ablation of VT late after myocardial infarction, it is desirable to localize and destroy area(s) of slow conduction "critical link" within the reentry circuit. Conventionally, they may be identified by endocardial catheter mapping, continuous electrical activity, mid-diastolic potentials, earliest endocardial activation, pace-mapping etc. However, none of these methods are very specific. Entrainment method may be used to localize the slow conduction zone of reentrant VT. Concealed entrainment is consistent with pacing at a site in the reentry circuit but may also occur at some "bystander" sites that are close to the reentry circuit but are not participating in the circuit itself. During pacing at the slow conduction area of the reentry circuit, the stimulus to QRS (S-QRS) interval should equal the electrogram to QRS (EG-QRS) interval during VT. Similarly the post-pacing interval (PPI) approximates the tachycardia cycle length. During pacing at bystander sites, the S-QRS interval may be greater, less than or equal to the EG-QRS interval, depending on the conduction time from the bystander site to the circuit. The PPI, however, always exceed the tachycardia cycle length. In conjunction with concealed entrainment, the use of diastolic potential, double potentials and continuous electrical activity enhances the prediction of radiofrequency termination of post-infarction VT.

  14. A genetic atlas of human admixture history

    PubMed Central

    Hellenthal, Garrett; Busby, George B.J.; Band, Gavin; Wilson, James F.; Capelli, Cristian

    2014-01-01

    Modern genetic data combined with appropriate statistical methods have the potential to contribute substantially to our understanding of human history. We have developed an approach that exploits the genomic structure of admixed populations to date and characterize historical mixture events at fine scales. We used this to produce an atlas of worldwide human admixture history, constructed using genetic data alone and encompassing over 100 events occurring over the past 4,000 years. We identify events whose dates and participants suggest they describe genetic impacts of the Mongol Empire, Arab slave trade, Bantu expansion, first millennium CE migrations in eastern Europe, and European colonialism, as well as unrecorded events, revealing admixture to be an almost universal force shaping human populations. PMID:24531965

  15. Heterogeneity in Genetic Admixture across Different Regions of Argentina

    PubMed Central

    Avena, Sergio; Via, Marc; Ziv, Elad; Pérez-Stable, Eliseo J.; Gignoux, Christopher R.; Dejean, Cristina; Huntsman, Scott; Torres-Mejía, Gabriela; Dutil, Julie; Matta, Jaime L.; Beckman, Kenneth; Burchard, Esteban González; Parolin, María Laura; Goicoechea, Alicia; Acreche, Noemí; Boquet, Mariel; Ríos Part, María Del Carmen; Fernández, Vanesa; Rey, Jorge; Stern, Mariana C.; Carnese, Raúl F.; Fejerman, Laura

    2012-01-01

    The population of Argentina is the result of the intermixing between several groups, including Indigenous American, European and African populations. Despite the commonly held idea that the population of Argentina is of mostly European origin, multiple studies have shown that this process of admixture had an impact in the entire Argentine population. In the present study we characterized the distribution of Indigenous American, European and African ancestry among individuals from different regions of Argentina and evaluated the level of discrepancy between self-reported grandparental origin and genetic ancestry estimates. A set of 99 autosomal ancestry informative markers (AIMs) was genotyped in a sample of 441 Argentine individuals to estimate genetic ancestry. We used non-parametric tests to evaluate statistical significance. The average ancestry for the Argentine sample overall was 65% European (95%CI: 63–68%), 31% Indigenous American (28–33%) and 4% African (3–4%). We observed statistically significant differences in European ancestry across Argentine regions [Buenos Aires province (BA) 76%, 95%CI: 73–79%; Northeast (NEA) 54%, 95%CI: 49–58%; Northwest (NWA) 33%, 95%CI: 21–41%; South 54%, 95%CI: 49–59%; p<0.0001] as well as between the capital and immediate suburbs of Buenos Aires city compared to more distant suburbs [80% (95%CI: 75–86%) versus 68% (95%CI: 58–77%), p = 0.01]. European ancestry among individuals that declared all grandparents born in Europe was 91% (95%CI: 88–94%) compared to 54% (95%CI: 51–57%) among those with no European grandparents (p<0.001). Our results demonstrate the range of variation in genetic ancestry among Argentine individuals from different regions in the country, highlighting the importance of taking this variation into account in genetic association and admixture mapping studies in this population. PMID:22506044

  16. Admixture in Hispanic Americans: its impact on ITGAM association and implications for admixture mapping in SLE.

    PubMed

    Molineros, J E; Kim-Howard, X; Deshmukh, H; Jacob, C O; Harley, J B; Nath, S K

    2009-07-01

    Systemic Lupus Erythematosus (SLE) disproportionately affects minorities, such as Hispanic Americans (HA). Prevalence of SLE is 3-5 times higher in HA than in European-derived populations and have more active disease at the time of diagnosis, with more serious organ system involvement. HA is an admixed population, it is possible that there is an effect of admixture on the relative risk of the disease. This admixture can create substantial increase of linkage disequilibrium (LD) in both magnitude and range, which can provide a unique opportunity for admixture mapping. The main objectives of this study are to (a) estimate hidden population structure in HA individuals; (b) estimate individual ancestry proportions and its impact on SLE risk; (c) assess impact of admixture on ITGAM association, a recently identified SLE susceptibility gene; and (d) estimate power of admixture mapping in HA. Our dataset contained 1125 individuals, of whom 884 (657 SLE cases and 227 controls) were self-classified as HA. Using 107 unlinked ancestry informative markers (AIMs), we estimated hidden population structure and individual ancestry in HA. Out of 5671 possible pairwise LD, 54% were statistically significant, indicating recent population admixture. The best-fitted model for HA was a four-population model with average ancestry of European (48%), American-Indian (AI) (40%), African (8%) and a fourth population (4%) with unknown ancestry. We also identified significant higher risk associated with AI ancestry (odds ratio (OR)=4.84, P=0.0001, 95% CI (confidence interval)=2.14-10.95) on overall SLE. We showed that ITGAM is associated as a risk factor for SLE (OR=2.06, P=8.74 x 10(-5), 95% CI=1.44-2.97). This association is not affected by population substructure or admixture. We have shown that HA have great potential and are an appropriate population for admixture mapping. As expected, the case-only design is more powerful than case-control design, for any given admixture proportion or

  17. A Genomewide Admixture Map for Latino Populations

    PubMed Central

    Price, Alkes L. ; Patterson, Nick ; Yu, Fuli ; Cox, David R. ; Waliszewska, Alicja ; McDonald, Gavin J. ; Tandon, Arti ; Schirmer, Christine ; Neubauer, Julie ; Bedoya, Gabriel ; Duque, Constanza ; Villegas, Alberto ; Bortolini, Maria Catira ; Salzano, Francisco M. ; Gallo, Carla ; Mazzotti, Guido ; Tello-Ruiz, Marcela ; Riba, Laura ; Aguilar-Salinas, Carlos A. ; Canizales-Quinteros, Samuel ; Menjivar, Marta ; Klitz, William ; Henderson, Brian ; Haiman, Christopher A. ; Winkler, Cheryl ; Tusie-Luna, Teresa ; Ruiz-Linares, Andrés ; Reich, David 

    2007-01-01

    Admixture mapping is an economical and powerful approach for localizing disease genes in populations of recently mixed ancestry and has proven successful in African Americans. The method holds equal promise for Latinos, who typically inherit a mix of European, Native American, and African ancestry. However, admixture mapping in Latinos has not been practical because of the lack of a map of ancestry-informative markers validated in Native American and other populations. To address this, we screened multiple databases, containing millions of markers, to identify 4,186 markers that were putatively informative for determining the ancestry of chromosomal segments in Latino populations. We experimentally validated each of these markers in at least 232 new Latino, European, Native American, and African samples, and we selected a subset of 1,649 markers to form an admixture map. An advantage of our strategy is that we focused our map on markers distinguishing Native American from other ancestries and restricted it to markers with very similar frequencies in Europeans and Africans, which decreased the number of markers needed and minimized the possibility of false disease associations. We evaluated the effectiveness of our map for localizing disease genes in four Latino populations from both North and South America. PMID:17503322

  18. Scale dependence of entrainment-mixing mechanisms in cumulus clouds

    DOE PAGES

    Lu, Chunsong; Liu, Yangang; Niu, Shengjie; ...

    2014-12-17

    This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasingmore » scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.« less

  19. Scale dependence of entrainment-mixing mechanisms in cumulus clouds

    SciTech Connect

    Lu, Chunsong; Liu, Yangang; Niu, Shengjie; Endo, Satoshi

    2014-12-17

    This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasing scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.

  20. Entrainment by turbulent jets issuing from sharp-edged inlet round nozzles

    NASA Astrophysics Data System (ADS)

    Trabold, T. A.; Essen, E. B.; Obot, N. T.

    Experiments were carried out to determine entrainment rates by turbulent air jets generated with square-edged inlet round nozzles. A parametric study was made which included the effects of Reynolds number, nozzle length, partial confinement and geometry of the jet plenum chamber. Measurements were made for the region extending from the nozzle exit to 24 jet hole diameters downstream. There is a large difference in entrainment rate between jets generated with relatively short nozzles and those discharged through long tubes.

  1. Using circadian entrainment to find cryptic clocks.

    PubMed

    Eelderink-Chen, Zheng; Olmedo, Maria; Bosman, Jasper; Merrow, Martha

    2015-01-01

    Three properties are most often attributed to the circadian clock: a ca. 24-h free-running rhythm, temperature compensation of the circadian rhythm, and its entrainment to zeitgeber cycles. Relatively few experiments, however, are performed under entrainment conditions. Rather, most chronobiology protocols concern constant conditions. We have turned this paradigm around and used entrainment to study the circadian clock in organisms where a free-running rhythm is weak or lacking. We describe two examples therein: Caenorhabditis elegans and Saccharomyces cerevisiae. By probing the system with zeitgeber cycles that have various structures and amplitudes, we can demonstrate the establishment of systematic entrained phase angles in these organisms. We conclude that entrainment can be utilized to discover hitherto unknown circadian clocks and we discuss the implications of using entrainment more broadly, even in model systems that show robust free-running rhythms.

  2. Crustal entrainment and pulsar glitches.

    PubMed

    Chamel, N

    2013-01-04

    Large pulsar frequency glitches are generally interpreted as sudden transfers of angular momentum between the neutron superfluid permeating the inner crust and the rest of the star. Despite the absence of viscous drag, the neutron superfluid is strongly coupled to the crust due to nondissipative entrainment effects. These effects are shown to severely limit the maximum amount of angular momentum that can possibly be transferred during glitches. In particular, it is found that the glitches observed in the Vela pulsar require an additional reservoir of angular momentum.

  3. Optimal entrainment of heterogeneous noisy neurons.

    PubMed

    Wilson, Dan; Holt, Abbey B; Netoff, Theoden I; Moehlis, Jeff

    2015-01-01

    We develop a methodology to design a stimulus optimized to entrain nonlinear, noisy limit cycle oscillators with uncertain properties. Conditions are derived which guarantee that the stimulus will entrain the oscillators despite these uncertainties. Using these conditions, we develop an energy optimal control strategy to design an efficient entraining stimulus and apply it to numerical models of noisy phase oscillators and to in vitro hippocampal neurons. In both instances, the optimal stimuli outperform other similar but suboptimal entraining stimuli. Because this control strategy explicitly accounts for both noise and inherent uncertainty of model parameters, it could have experimental relevance to neural circuits where robust spike timing plays an important role.

  4. Partial entrainment of gravel bars during floods

    USGS Publications Warehouse

    Konrad, C.P.; Booth, D.B.; Burges, S.J.; Montgomery, D.R.

    2002-01-01

    Spatial patterns of bed material entrainment by floods were documented at seven gravel bars using arrays of metal washers (bed tags) placed in the streambed. The observed patterns were used to test a general stochastic model that bed material entrainment is a spatially independent, random process where the probability of entrainment is uniform over a gravel bar and a function of the peak dimensionless shear stress ??*0 of the flood. The fraction of tags missing from a gravel bar during a flood, or partial entrainment, had an approximately normal distribution with respect to ??*0 with a mean value (50% of the tags entrained) of 0.085 and standard deviation of 0.022 (root-mean-square error of 0.09). Variation in partial entrainment for a given ??*0 demonstrated the effects of flow conditioning on bed strength, with lower values of partial entrainment after intermediate magnitude floods (0.065 < ??*0 < 0.08) than after higher magnitude floods. Although the probability of bed material entrainment was approximately uniform over a gravel bar during individual floods and independent from flood to flood, regions of preferential stability and instability emerged at some bars over the course of a wet season. Deviations from spatially uniform and independent bed material entrainment were most pronounced for reaches with varied flow and in consecutive floods with small to intermediate magnitudes.

  5. Entrainment instability and vertical motion as causes of stratocumulus breakup

    NASA Technical Reports Server (NTRS)

    Weaver, C. J.; Pearson, R., Jr.

    1990-01-01

    Entrainment instability is thought to be a cause of stratocumulus breakup. At the interface between the cloud and the overlying air, mixtures may form which are negatively buoyant because of cloud droplet evaporation. Quantities devised to predict breakup are obtained from aircraft observations and are tested against cloud observations from satellite. Often, the parameters indicate that breakup should occur but the clouds remain, sometimes for several days. One possible explanation for breakup is vertical motion from passing synoptic cyclones. Several cases suggest that breakup is associated with the downward vertical motion from the cold air advected behind an eastward moving cyclone.

  6. Quantifying entrainment in pyroclastic density currents from the Tungurahua eruption, Ecuador: Integrating field proxies with numerical simulations

    NASA Astrophysics Data System (ADS)

    Benage, M. C.; Dufek, J.; Mothes, P. A.

    2016-07-01

    The entrainment of air into pyroclastic density currents (PDCs) impacts the dynamics and thermal history of these highly mobile currents. However, direct measurement of entrainment in PDCs is hampered due to hazardous conditions and opaqueness of these flows. We combine three-dimensional multiphase Eulerian-Eulerian-Lagrangian calculations with proxies of thermal conditions preserved in deposits to quantify air entrainment in PDCs at Tungurahua volcano, Ecuador. We conclude that small-volume PDCs develop a particle concentration gradient that results in disparate thermal characteristics for the concentrated bed load (>600 to ~800 K) and the overlying dilute suspended load (~300-600 K). The dilute suspended load has effective entrainment coefficients 2-3 times larger than the bed load. This investigation reveals a dichotomy in entrainment and thermal history between two regions in the current and provides a mechanism to interpret the depositional thermal characteristics of small-volume but frequently occurring PDCs.

  7. Ancestry, admixture and fitness in Colombian genomes.

    PubMed

    Rishishwar, Lavanya; Conley, Andrew B; Wigington, Charles H; Wang, Lu; Valderrama-Aguirre, Augusto; Jordan, I King

    2015-07-21

    The human dimension of the Columbian Exchange entailed substantial genetic admixture between ancestral source populations from Africa, the Americas and Europe, which had evolved separately for many thousands of years. We sought to address the implications of the creation of admixed American genomes, containing novel allelic combinations, for human health and fitness via analysis of an admixed Colombian population from Medellin. Colombian genomes from Medellin show a wide range of three-way admixture contributions from ancestral source populations. The primary ancestry component for the population is European (average = 74.6%, range = 45.0%-96.7%), followed by Native American (average = 18.1%, range = 2.1%-33.3%) and African (average = 7.3%, range = 0.2%-38.6%). Locus-specific patterns of ancestry were evaluated to search for genomic regions that are enriched across the population for particular ancestry contributions. Adaptive and innate immune system related genes and pathways are particularly over-represented among ancestry-enriched segments, including genes (HLA-B and MAPK10) that are involved in defense against endemic pathogens such as malaria. Genes that encode functions related to skin pigmentation (SCL4A5) and cutaneous glands (EDAR) are also found in regions with anomalous ancestry patterns. These results suggest the possibility that ancestry-specific loci were differentially retained in the modern admixed Colombian population based on their utility in the New World environment.

  8. Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

    PubMed Central

    Loh, Po-Ru; Lipson, Mark; Patterson, Nick; Moorjani, Priya; Pickrell, Joseph K.; Reich, David; Berger, Bonnie

    2013-01-01

    Long-range migrations and the resulting admixtures between populations have been important forces shaping human genetic diversity. Most existing methods for detecting and reconstructing historical admixture events are based on allele frequency divergences or patterns of ancestry segments in chromosomes of admixed individuals. An emerging new approach harnesses the exponential decay of admixture-induced linkage disequilibrium (LD) as a function of genetic distance. Here, we comprehensively develop LD-based inference into a versatile tool for investigating admixture. We present a new weighted LD statistic that can be used to infer mixture proportions as well as dates with fewer constraints on reference populations than previous methods. We define an LD-based three-population test for admixture and identify scenarios in which it can detect admixture events that previous formal tests cannot. We further show that we can uncover phylogenetic relationships among populations by comparing weighted LD curves obtained using a suite of references. Finally, we describe several improvements to the computation and fitting of weighted LD curves that greatly increase the robustness and speed of the calculations. We implement all of these advances in a software package, ALDER, which we validate in simulations and apply to test for admixture among all populations from the Human Genome Diversity Project (HGDP), highlighting insights into the admixture history of Central African Pygmies, Sardinians, and Japanese. PMID:23410830

  9. The entrainment rate for a row of turbulent jets. M.S. Thesis Final Report

    NASA Technical Reports Server (NTRS)

    Gordon, Eliott B.; Greber, Isaac

    1990-01-01

    Entrainment rates for a row of isothermal circular air jets issuing into a quiescent environment are found by integrating velocity distributions measured by a linearized hot-wire anemometer. Jet spacing to jet diameter ratios of 2.5, 5, 10, and 20 are studied at jet Reynold's numbers ranging from 5110 to 12070. Velocity distributions are determined at regular downstream intervals at axial distances equal to 16.4 to 164 jet diameters from the jet source. The entrainment rates for the four spacing configurations vary monotonically with increasing spacing/diameter between the limiting case of the slot jet entrainment rate (where the jet spacing to diameter ratio is zero) and the circular jet entrainment rate (in which the spacing to diameter ratio is infinity).

  10. Informativeness of the CODIS STR loci for admixture analysis.

    PubMed

    Barnholtz-Sloan, Jill S; Pfaff, Carrie L; Chakraborty, Ranajit; Long, Jeffrey C

    2005-11-01

    Population admixture (or ancestry) is used as an approach to gene discovery in complex diseases, particularly when the disease prevalence varies widely across geographic populations. Admixture analysis could be useful for forensics because an indication of a perpetrator's ancestry would narrow the pool of suspects for a particular crime. The purpose of this study was to use Fisher's information to identify informative sets of markers for admixture analysis. Using published founding population allele frequencies we test three marker sets for efficacy for estimating admixture: the FBI CODIS Core STR loci, the HGDP-CEPH Human Genome Diversity Cell Line Panel and the set of 39 ancestry informative SNPS from the Shriver lab at Pennsylvania State University. We conclude that the FBI CODIS Core STR set is valid for admixture analysis, but not the most precise. We recommend using a combination of the most informative markers from the HGDP-CEPH and Shriver loci sets.

  11. Fluid entrainment by isolated vortex rings

    NASA Astrophysics Data System (ADS)

    Dabiri, John O.; Gharib, Morteza

    2004-07-01

    Of particular importance to the development of models for isolated vortex ring dynamics in a real fluid is knowledge of ambient fluid entrainment by the ring. This time-dependent process dictates changes in the volume of fluid that must share impulse delivered by the vortex ring generator. Therefore fluid entrainment is also of immediate significance to the unsteady forces that arise due to the presence of vortex rings in starting flows. Applications ranging from industrial and transportation, to animal locomotion and cardiac flows, are currently being investigated to understand the dynamical role of the observed vortex ring structures. Despite this growing interest, fully empirical measurements of fluid entrainment by isolated vortex rings have remained elusive. The primary difficulties arise in defining the unsteady boundary of the ring, as well as an inability to maintain the vortex ring in the test section sufficiently long to facilitate measurements. We present a new technique for entrainment measurement that utilizes a coaxial counter-flow to retard translation of vortex rings generated from a piston cylinder apparatus, so that their growth due to fluid entrainment can be observed. Instantaneous streamlines of the flow are used to determine the unsteady vortex ring boundary and compute ambient fluid entrainment. Measurements indicate that the entrainment process does not promote self-similar vortex ring growth, but instead consists of a rapid convection-based entrainment phase during ring formation, followed by a slower diffusive mechanism that entrains ambient fluid into the isolated vortex ring. Entrained fluid typically constitutes 30% to 40% of the total volume of fluid carried with the vortex ring. Various counter-flow protocols were used to substantially manipulate the diffusive entrainment process, producing rings with entrained fluid fractions up to 65%. Measurements of vortex ring growth rate and vorticity distribution during diffusive entrainment

  12. Entrainment rates and microphysics in POST stratocumulus

    NASA Astrophysics Data System (ADS)

    Gerber, H.; Frick, G.; Malinowski, Szymon P.; Jonsson, H.; Khelif, D.; Krueger, Steven K.

    2013-11-01

    An aircraft field study (POST; Physics of Stratocumulus Top) was conducted off the central California coast in July and August 2008 to deal with the known difficulty of measuring entrainment rates in the radiatively important stratocumulus (Sc) prevalent in that area. The Center for Interdisciplinary Remotely-Piloted Aircraft Studies Twin Otter research aircraft flew 15 quasi-Lagrangian flights in unbroken Sc and carried a full complement of probes including three high-data-rate probes: ultrafast temperature probe, particulate volume monitor probe, and gust probe. The probes' colocation near the nose of the Twin Otter permitted estimation of entrainment fluxes and rates with an in-cloud resolution of 1 m. Results include the following: Application of the conditional sampling variation of classical mixed layer theory for calculating the entrainment rate into cloud top for POST flights is shown to be inadequate for most of the Sc. Estimated rates resemble previous results after theory is modified to take into account both entrainment and evaporation at cloud top given the strong wind shear and mixing at cloud top. Entrainment rates show a tendency to decrease for large shear values, and the largest rates are for the smallest temperature jumps across the inversion. Measurements indirectly suggest that entrained parcels are primarily cooled by infrared flux divergence rather than cooling from droplet evaporation, while detrainment at cloud top causes droplet evaporation and cooling in the entrainment interface layer above cloud top.

  13. Temperature compensation and entrainment in circadian rhythms

    NASA Astrophysics Data System (ADS)

    Bodenstein, C.; Heiland, I.; Schuster, S.

    2012-06-01

    To anticipate daily variations in the environment and coordinate biological activities into a daily cycle many organisms possess a circadian clock. In the absence of external time cues the circadian rhythm persists with a period of approximately 24 h. The clock phase can be shifted by single pulses of light, darkness, chemicals, or temperature and this allows entrainment of the clock to exactly 24 h by cycles of these zeitgebers. On the other hand, the period of the circadian rhythm is kept relatively constant within a physiological range of constant temperatures, which means that the oscillator is temperature compensated. The mechanisms behind temperature compensation and temperature entrainment are not fully understood, neither biochemically nor mathematically. Here, we theoretically investigate the interplay of temperature compensation and entrainment in general oscillatory systems. We first give an analytical treatment for small temperature shifts and derive that every temperature-compensated oscillator is entrainable to external small-amplitude temperature cycles. Temperature compensation ensures that this entrainment region is always centered at the endogenous period regardless of possible seasonal temperature differences. Moreover, for small temperature cycles the entrainment region of the oscillator is potentially larger for rectangular pulses. For large temperature shifts we numerically analyze different circadian clock models proposed in the literature with respect to these properties. We observe that for such large temperature shifts sinusoidal or gradual temperature cycles allow a larger entrainment region than rectangular cycles.

  14. Ancestry, admixture and fitness in Colombian genomes

    PubMed Central

    Rishishwar, Lavanya; Conley, Andrew B.; Wigington, Charles H.; Wang, Lu; Valderrama-Aguirre, Augusto; King Jordan, I.

    2015-01-01

    The human dimension of the Columbian Exchange entailed substantial genetic admixture between ancestral source populations from Africa, the Americas and Europe, which had evolved separately for many thousands of years. We sought to address the implications of the creation of admixed American genomes, containing novel allelic combinations, for human health and fitness via analysis of an admixed Colombian population from Medellin. Colombian genomes from Medellin show a wide range of three-way admixture contributions from ancestral source populations. The primary ancestry component for the population is European (average = 74.6%, range = 45.0%–96.7%), followed by Native American (average = 18.1%, range = 2.1%–33.3%) and African (average = 7.3%, range = 0.2%–38.6%). Locus-specific patterns of ancestry were evaluated to search for genomic regions that are enriched across the population for particular ancestry contributions. Adaptive and innate immune system related genes and pathways are particularly over-represented among ancestry-enriched segments, including genes (HLA-B and MAPK10) that are involved in defense against endemic pathogens such as malaria. Genes that encode functions related to skin pigmentation (SCL4A5) and cutaneous glands (EDAR) are also found in regions with anomalous ancestry patterns. These results suggest the possibility that ancestry-specific loci were differentially retained in the modern admixed Colombian population based on their utility in the New World environment. PMID:26197429

  15. Genetic evidence for archaic admixture in Africa.

    PubMed

    Hammer, Michael F; Woerner, August E; Mendez, Fernando L; Watkins, Joseph C; Wall, Jeffrey D

    2011-09-13

    A long-debated question concerns the fate of archaic forms of the genus Homo: did they go extinct without interbreeding with anatomically modern humans, or are their genes present in contemporary populations? This question is typically focused on the genetic contribution of archaic forms outside of Africa. Here we use DNA sequence data gathered from 61 noncoding autosomal regions in a sample of three sub-Saharan African populations (Mandenka, Biaka, and San) to test models of African archaic admixture. We use two complementary approximate-likelihood approaches and a model of human evolution that involves recent population structure, with and without gene flow from an archaic population. Extensive simulation results reject the null model of no admixture and allow us to infer that contemporary African populations contain a small proportion of genetic material (≈ 2%) that introgressed ≈ 35 kya from an archaic population that split from the ancestors of anatomically modern humans ≈ 700 kya. Three candidate regions showing deep haplotype divergence, unusual patterns of linkage disequilibrium, and small basal clade size are identified and the distributions of introgressive haplotypes surveyed in a sample of populations from across sub-Saharan Africa. One candidate locus with an unusual segment of DNA that extends for >31 kb on chromosome 4 seems to have introgressed into modern Africans from a now-extinct taxon that may have lived in central Africa. Taken together our results suggest that polymorphisms present in extant populations introgressed via relatively recent interbreeding with hominin forms that diverged from the ancestors of modern humans in the Lower-Middle Pleistocene.

  16. A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 1; Model Development

    NASA Technical Reports Server (NTRS)

    Cohen, Charles

    1998-01-01

    A method is developed which uses numerical tracers to make accurate diagnoses of entraimnent and detrainment rates and of the properties of the entrained and detrained air in numerically simulated clouds. The numerical advection scheme is modified to make it nondispersive, as required by the use of the tracers. Tests of the new method are made, and an appropriate definition of clouds is selected. Distributions of mixing fractions in the model consistently show maximums at the end points, for nearly undilute environmental air or nearly undilute cloud air, with a uniform distribution between. The cumulonimbus clouds simulated here entrain air that had been substantially changed by the clouds, and detrained air that is not necessarily representative of the cloud air at the same level.

  17. Analysis of admixture and genetic structure of two Native American groups of Southern Argentinean Patagonia.

    PubMed

    Sala, Andrea; Corach, Daniel

    2014-03-01

    Argentinean Patagonia is inhabited by people that live principally in urban areas and by small isolated groups of individuals that belong to indigenous aboriginal groups; this territory exhibits the lowest population density of the country. Mapuche and Tehuelche (Mapudungun linguistic branch), are the only extant Native American groups that inhabit the Argentinean Patagonian provinces of Río Negro and Chubut. Fifteen autosomal STRs, 17 Y-STRs, mtDNA full length control region sequence and two sets of Y and mtDNA-coding region SNPs were analyzed in a set of 434 unrelated individuals. The sample set included two aboriginal groups, a group of individuals whose family name included Native American linguistic root and urban samples from Chubut, Río Negro and Buenos Aires provinces of Argentina. Specific Y Amerindian haplogroup Q1 was found in 87.5% in Mapuche and 58.82% in Tehuelche, while the Amerindian mtDNA haplogroups were present in all the aboriginal sample contributors investigated. Admixture analysis performed by means of autosomal and Y-STRs showed the highest degree of admixture in individuals carrying Mapuche surnames, followed by urban populations, and finally by isolated Native American populations as less degree of admixture. The study provided novel genetic information about the Mapuche and Tehuelche people and allowed us to establish a genetic correlation among individuals with Mapudungun surnames that demonstrates not only a linguistic but also a genetic relationship to the isolated aboriginal communities, representing a suitable proxy indicator for assessing genealogical background.

  18. State of the art: regional anesthesia using anesthetic admixtures.

    PubMed

    Fetzer-Fowler, S

    1992-08-01

    Aging, high-risk, and ambulatory patients comprise a growing population of surgical candidates. The advantages of regional anesthesia for these patients has promoted technological and pharmacological advances. As new anesthetic agents are developed, methods to improve existing local anesthetics continue. This article reviews the current practice of local anesthetic admixtures. The physiological action of the local anesthetics and their additives is explained relative to their chemical properties. The advantages and risks when adding bicarbonate and epinephrine are described. Nursing implications for the care of the patient receiving regional anesthesia using admixtures are reviewed. An actual case report is presented to demonstrate the clinical application of local anesthetic admixtures.

  19. Eyeblink entrainment at breakpoints of speech.

    PubMed

    Nakano, Tamami; Kitazawa, Shigeru

    2010-09-01

    The eyes play an essential role in social communication. Eyeblinks, however, have thus far received minor attention. We previously showed that subjects blink in synchrony while viewing the same video stories (Nakano et al. in Proc R Soc B 276:3635-3644, 2009). We therefore hypothesized that eyeblinks are synchronized between listener and speaker in face-to-face conversation. Here, we show that listeners blinked with a delay of 0.25-0.5 s after the speaker blinked when the listeners viewed close-up video clips (with sound) of the speaker's face. Furthermore, this entrainment was selectively triggered by speaker's eyeblinks occurring at the end and during pauses in speech. Eyeblink entrainment was not observed when viewing identical video clips without sound, indicating that blink entrainment was not an automatic imitation. We therefore suggest that eyeblink entrainment reflects smooth communication between interactants.

  20. Washing of the AN-107 entrained solids

    SciTech Connect

    GJ Lumetta; FV Hoopes

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the effects of inhibited water washing on the composition of the entrained solids in the diluted AN-107 low-activity waste (LAW) sample. The objective of this work was to gather data on the solubility of the AN-107 entrained solids in 0.01 M NaOH, so that BNFL can evaluate whether these solids require caustic leaching.

  1. Neurophysiological Analysis of Circadian Rhythm Entrainment

    DTIC Science & Technology

    1994-05-24

    the newly discovered 5 - HT7 receptor have yet to be performed. These results demonstrate that serotonin acting through a 5 -HTIA-like receptor can...ANNUAL 1 Jan 93 TO 31 Dec 93 4. TITLE AND SUBTITLE 5 . FUNDING NUMBERS NEUROPHYSIOLOGICAL ANALYSIS OF CIRCADIAN RHYTHM F49620-93-1-0089 ENTRAINMENT j...sensitivity of SCN cells to serotonin ( 5 -HT) and the effects of serotonin on rhythm entrainment. The evidence to date has suggested, however, that

  2. Air

    MedlinePlus

    ... do to protect yourself from dirty air . Indoor air pollution and outdoor air pollution Air can be polluted indoors and it can ... this chart to see what things cause indoor air pollution and what things cause outdoor air pollution! Indoor ...

  3. Simulation study on factors influencing the entrainment behavior of liquid steel as bubbles pass through the steel/slag interface

    NASA Astrophysics Data System (ADS)

    Li, Xiang; Bao, Yan-ping; Wang, Min; Lin, Lu

    2016-05-01

    In this study, a water/silicone oil interface was used to simulate the steel/slag interface in a converter. A high-speed camera was used to record the entrainment process of droplets when air bubbles were passed through the water/silicone oil interface. Motion parameters of the bubbles and droplets were obtained using particle kinematic analysis software, and the entrainment rate of the droplets was calculated. It was found that the entrainment rate decreased from 29.5% to 0 when the viscosity of the silicone oil was increased from 60 mPa·s to 820 mPa·s in the case of bubbles with a 5 mm equivalent diameter passing through the water/silicone oil interface. The results indicate that increasing the viscosity of the silicone oil is conducive to reducing the entrainment rate. The entrainment rate increased from 0 to 136.3% in the case of silicone oil with a viscosity of 60 mPa·s when the equivalent diameter of the bubbles was increased from 3 mm to 7 mm. We therefore conclude that small bubbles are also conductive to reducing the entrainment rate. The force analysis results for the water column indicate that the entrainment rate of droplets is affected by the velocity of the bubble passing through the water/silicone oil interface and that the entrainment rate decreases with the bubble velocity.

  4. Coupling governs entrainment range of circadian clocks

    PubMed Central

    Abraham, Ute; Granada, Adrián E; Westermark, Pål O; Heine, Markus; Kramer, Achim; Herzel, Hanspeter

    2010-01-01

    Circadian clocks are endogenous oscillators driving daily rhythms in physiology and behavior. Synchronization of these timers to environmental light–dark cycles (‘entrainment') is crucial for an organism's fitness. Little is known about which oscillator qualities determine entrainment, i.e., entrainment range, phase and amplitude. In a systematic theoretical and experimental study, we uncovered these qualities for circadian oscillators in the suprachiasmatic nucleus (SCN—the master clock in mammals) and the lung (a peripheral clock): (i) the ratio between stimulus (zeitgeber) strength and oscillator amplitude and (ii) the rigidity of the oscillatory system (relaxation rate upon perturbation) determine entrainment properties. Coupling among oscillators affects both qualities resulting in increased amplitude and rigidity. These principles explain our experimental findings that lung clocks entrain to extreme zeitgeber cycles, whereas SCN clocks do not. We confirmed our theoretical predictions by showing that pharmacological inhibition of coupling in the SCN leads to larger ranges of entrainment. These differences between master and the peripheral clocks suggest that coupling-induced rigidity in the SCN filters environmental noise to create a robust circadian system. PMID:21119632

  5. Tuning the phase of circadian entrainment

    PubMed Central

    Bordyugov, Grigory; Abraham, Ute; Granada, Adrian; Rose, Pia; Imkeller, Katharina; Kramer, Achim; Herzel, Hanspeter

    2015-01-01

    The circadian clock coordinates daily physiological, metabolic and behavioural rhythms. These endogenous oscillations are synchronized with external cues (‘zeitgebers’), such as daily light and temperature cycles. When the circadian clock is entrained by a zeitgeber, the phase difference ψ between the phase of a clock-controlled rhythm and the phase of the zeitgeber is of fundamental importance for the fitness of the organism. The phase of entrainment ψ depends on the mismatch between the intrinsic period τ and the zeitgeber period T and on the ratio of the zeitgeber strength to oscillator amplitude. Motivated by the intriguing complexity of empirical data and by our own experiments on temperature entrainment of mouse suprachiasmatic nucleus (SCN) slices, we present a theory on how clock and zeitgeber properties determine the phase of entrainment. The wide applicability of the theory is demonstrated using mathematical models of different complexity as well as by experimental data. Predictions of the theory are confirmed by published data on Neurospora crassa strains for different period mismatches τ − T and varying photoperiods. We apply a novel regression technique to analyse entrainment of SCN slices by temperature cycles. We find that mathematical models can explain not only the stable asymptotic phase of entrainment, but also transient phase dynamics. Our theory provides the potential to explore seasonal variations of circadian rhythms, jet lag and shift work in forthcoming studies. PMID:26136227

  6. Coupling governs entrainment range of circadian clocks.

    PubMed

    Abraham, Ute; Granada, Adrián E; Westermark, Pål O; Heine, Markus; Kramer, Achim; Herzel, Hanspeter

    2010-11-30

    Circadian clocks are endogenous oscillators driving daily rhythms in physiology and behavior. Synchronization of these timers to environmental light-dark cycles ('entrainment') is crucial for an organism's fitness. Little is known about which oscillator qualities determine entrainment, i.e., entrainment range, phase and amplitude. In a systematic theoretical and experimental study, we uncovered these qualities for circadian oscillators in the suprachiasmatic nucleus (SCN-the master clock in mammals) and the lung (a peripheral clock): (i) the ratio between stimulus (zeitgeber) strength and oscillator amplitude and (ii) the rigidity of the oscillatory system (relaxation rate upon perturbation) determine entrainment properties. Coupling among oscillators affects both qualities resulting in increased amplitude and rigidity. These principles explain our experimental findings that lung clocks entrain to extreme zeitgeber cycles, whereas SCN clocks do not. We confirmed our theoretical predictions by showing that pharmacological inhibition of coupling in the SCN leads to larger ranges of entrainment. These differences between master and the peripheral clocks suggest that coupling-induced rigidity in the SCN filters environmental noise to create a robust circadian system.

  7. Tuning the phase of circadian entrainment.

    PubMed

    Bordyugov, Grigory; Abraham, Ute; Granada, Adrian; Rose, Pia; Imkeller, Katharina; Kramer, Achim; Herzel, Hanspeter

    2015-07-06

    The circadian clock coordinates daily physiological, metabolic and behavioural rhythms. These endogenous oscillations are synchronized with external cues ('zeitgebers'), such as daily light and temperature cycles. When the circadian clock is entrained by a zeitgeber, the phase difference ψ between the phase of a clock-controlled rhythm and the phase of the zeitgeber is of fundamental importance for the fitness of the organism. The phase of entrainment ψ depends on the mismatch between the intrinsic period τ and the zeitgeber period T and on the ratio of the zeitgeber strength to oscillator amplitude. Motivated by the intriguing complexity of empirical data and by our own experiments on temperature entrainment of mouse suprachiasmatic nucleus (SCN) slices, we present a theory on how clock and zeitgeber properties determine the phase of entrainment. The wide applicability of the theory is demonstrated using mathematical models of different complexity as well as by experimental data. Predictions of the theory are confirmed by published data on Neurospora crassa strains for different period mismatches τ - T and varying photoperiods. We apply a novel regression technique to analyse entrainment of SCN slices by temperature cycles. We find that mathematical models can explain not only the stable asymptotic phase of entrainment, but also transient phase dynamics. Our theory provides the potential to explore seasonal variations of circadian rhythms, jet lag and shift work in forthcoming studies.

  8. Polymorphic Admixture Typing in Human Ethnic Populations

    PubMed Central

    Dean, Michael; Stephens, J. Claiborne; Winkler, Cheryl; Lomb, Deborah A.; Ramsburg, Mark; Boaze, Raleigh; Stewart, Claudia; Charbonneau, Lauren; Goldman, David; Albaugh, Bernard J.; Goedert, James J.; Beasley, R. Palmer; Hwang, Lu-Yu; Buchbinder, Susan; Weedon, Michael; Johnson, Patricia A.; Eichelberger, Mary; O'Brien, Stephen J.

    1994-01-01

    A panel of 257 RFLP loci was selected on the basis of high heterozygosity in Caucasian DNA surveys and equivalent spacing throughout the human genome. Probes from each locus were used in a Southern blot survey of allele frequency distribution for four human ethnic groups: Caucasian, African American, Asian (Chinese), and American Indian (Cheyenne). Nearly all RFLP loci were polymorphic in each group, albeit with a broad range of differing allele frequencies (δ). The distribution of frequency differences (δ values) was used for three purposes: (1) to provide estimates for genetic distance (differentiation) among these ethnic groups, (2) to revisit with a large data set the proportion of human genetic variation attributable to differentiation within ethnic groups, and (3) to identify loci with high δ values between recently admixed populations of use in mapping by admixture linkage disequilibrium (MALD). Although most markers display significant allele frequency differences between ethnic groups, the overall genetic distances between ethnic groups were small (.066–.098), and <10% of the measured overall molecular genetic diversity in these human samples can be attributed to “racial” differentiation. The median δ values for pairwise comparisons between groups fell between .15 and .20, permitting identification of highly informative RFLP loci for MALD disease association studies. PMID:7942857

  9. Geographic Patterns of Genome Admixture in Latin American Mestizos

    PubMed Central

    Wang, Sijia; Ray, Nicolas; Rojas, Winston; Parra, Maria V.; Bedoya, Gabriel; Gallo, Carla; Poletti, Giovanni; Hill, Kim; Hurtado, Ana M.; Camrena, Beatriz; Nicolini, Humberto; Klitz, William; Barrantes, Ramiro; Molina, Julio A.; Freimer, Nelson B.; Bortolini, Maria Cátira; Salzano, Francisco M.; Petzl-Erler, Maria L.; Tsuneto, Luiza T.; Dipierri, José E.; Alfaro, Emma L.; Bailliet, Graciela; Bianchi, Nestor O.; Llop, Elena; Rothhammer, Francisco; Excoffier, Laurent; Ruiz-Linares, Andrés

    2008-01-01

    The large and diverse population of Latin America is potentially a powerful resource for elucidating the genetic basis of complex traits through admixture mapping. However, no genome-wide characterization of admixture across Latin America has yet been attempted. Here, we report an analysis of admixture in thirteen Mestizo populations (i.e. in regions of mainly European and Native settlement) from seven countries in Latin America based on data for 678 autosomal and 29 X-chromosome microsatellites. We found extensive variation in Native American and European ancestry (and generally low levels of African ancestry) among populations and individuals, and evidence that admixture across Latin America has often involved predominantly European men and both Native and African women. An admixture analysis allowing for Native American population subdivision revealed a differentiation of the Native American ancestry amongst Mestizos. This observation is consistent with the genetic structure of pre-Columbian populations and with admixture having involved Natives from the area where the Mestizo examined are located. Our findings agree with available information on the demographic history of Latin America and have a number of implications for the design of association studies in population from the region. PMID:18369456

  10. Scale-dependent entrainment velocity and scale-independent net entrainment in a turbulent axisymmetric jet

    NASA Astrophysics Data System (ADS)

    Philip, Jimmy; Mistry, Dhiren; Dawson, James; Marusic, Ivan

    2016-11-01

    The net entrainment in a jet is the product of the mean surface area (S ̲) and the mean entrainment velocity, V ̲ S ̲ , where, V ̲ = αUc with α the entrainment coefficient and Uc the mean centreline velocity. Instantaneously, however, entrainment velocity (v) at a point on the interface is the difference between the interface and the fluid velocities, and the total entrainment ∫ vds = VS , where S is the corrugated interface surface area and V the area averaged entrainment velocity. Using time-resolved multi-scale PIV/PLIF measurements of velocity and scalar in an axisymmetric jet at Re = 25000 , we evaluate V and S directly at the smallest resolved scales, and by filtering the data at different scales (Δ) we find their multi-scales counterparts, VΔ and SΔ. We show that V ̲ S ̲ =VΔ SΔ = V S , independent of the scale. Furthermore, S is found to have a fractal dimension D3 2 . 32 +/- 0 . 1 . Independently, we find that VΔ Δ 0 . 31 , indicating increasing entrainment velocity with increasing length scale. This is consistent with a constant net entrainment across scales, and suggests α as a scale-dependent quantity. Engineering and Physical Sciences Research Council (research Grant No. EP/I005879/1), David Crighton Fellowship from the DAMTP, Univ of Cambridge, and the Australian Research Council.

  11. The admixture structure and genetic variation of the archipelago of Cape Verde and its implications for admixture mapping studies.

    PubMed

    Beleza, Sandra; Campos, Joana; Lopes, Jailson; Araújo, Isabel Inês; Hoppfer Almada, Ana; Correia e Silva, António; Parra, Esteban J; Rocha, Jorge

    2012-01-01

    Recently admixed populations offer unique opportunities for studying human history and for elucidating the genetic basis of complex traits that differ in prevalence between human populations. Historical records, classical protein markers, and preliminary genetic data indicate that the Cape Verde islands in West Africa are highly admixed and primarily descended from European males and African females. However, little is known about the variation in admixture levels, admixture dynamics and genetic diversity across the islands, or about the potential of Cape Verde for admixture mapping studies. We have performed a detailed analysis of phenotypic and genetic variation in Cape Verde based on objective skin color measurements, socio-economic status (SES) evaluations and data for 50 autosomal, 34 X-chromosome, and 21 non-recombinant Y-chromosome (NRY) markers in 845 individuals from six islands of the archipelago. We find extensive genetic admixture between European and African ancestral populations (mean West African ancestry = 0.57, sd = 0.08), with individual African ancestry proportions varying considerably among the islands. African ancestry proportions calculated with X and Y-chromosome markers confirm that the pattern of admixture has been sex-biased. The high-resolution NRY-STRs reveal additional patterns of variation among the islands that are most consistent with differentiation after admixture. The differences in the autosomal admixture proportions are clearly evident in the skin color distribution across the islands (Pearson r = 0.54, P-value<2e-16). Despite this strong correlation, there are significant interactions between SES and skin color that are independent of the relationship between skin color and genetic ancestry. The observed distributions of admixture, genetic variation and skin color and the relationship of skin color with SES relate to historical and social events taking place during the settlement history of Cape Verde, and have implications for

  12. Observational estimates of detrainment and entrainment in non-precipitating shallow cumulus

    NASA Astrophysics Data System (ADS)

    Norgren, M. S.; Small, J. D.; Jonsson, H. H.; Chuang, P. Y.

    2014-08-01

    Vertical transport associated with cumulus clouds is important to the redistribution of gases, particles and energy, with subsequent consequences for many aspects of the climate system. Previous studies have suggested that detrainment from clouds can be comparable to the updraft mass flux, and thus represents an important contribution to vertical transport. In this study, we describe a new method to deduce the amounts of gross detrainment and entrainment experienced by non-precipitating cumulus clouds using aircraft observations. The method utilizes equations for three conserved variables: cloud mass, total water and moist static energy. Optimizing these three equations leads to estimates of the mass fractions of adiabatic mixed-layer air, entrained air and detrained air that the sampled cloud has experienced. The method is applied to six flights of the CIRPAS Twin Otter during the Gulf of Mexico Atmospheric Composition and Climate Study (GoMACCS) which took place in the Houston, Texas region during the summer of 2006 during which 176 small, non-precipitating cumulus were sampled. Our analysis suggests that, on average, these clouds were comprised of 30 to 70% mixed-layer air, with entrained air comprising most of the remainder. The mass fraction of detrained air was less than 2% for a majority of the clouds, although 15% of them did exhibit detrained air fractions larger than 10%. Entrained and detrained air mass fractions both increased with altitude, and the largest detrainment events were almost all associated with air that was at their level of neutral buoyancy, findings that are consistent with previous studies.

  13. Nonphotic entrainment of the human circadian pacemaker

    NASA Technical Reports Server (NTRS)

    Klerman, E. B.; Rimmer, D. W.; Dijk, D. J.; Kronauer, R. E.; Rizzo, J. F. 3rd; Czeisler, C. A.

    1998-01-01

    In organisms as diverse as single-celled algae and humans, light is the primary stimulus mediating entrainment of the circadian biological clock. Reports that some totally blind individuals appear entrained to the 24-h day have suggested that nonphotic stimuli may also be effective circadian synchronizers in humans, although the nonphotic stimuli are probably comparatively weak synchronizers, because the circadian rhythms of many totally blind individuals "free run" even when they maintain a 24-h activity-rest schedule. To investigate entrainment by nonphotic synchronizers, we studied the endogenous circadian melatonin and core body temperature rhythms of 15 totally blind subjects who lacked conscious light perception and exhibited no suppression of plasma melatonin in response to ocular bright-light exposure. Nine of these fifteen blind individuals were able to maintain synchronization to the 24-h day, albeit often at an atypical phase angle of entrainment. Nonphotic stimuli also synchronized the endogenous circadian rhythms of a totally blind individual to a non-24-h schedule while living in constant near darkness. We conclude that nonphotic stimuli can entrain the human circadian pacemaker in some individuals lacking ocular circadian photoreception.

  14. Entrainment and the cranial rhythmic impulse.

    PubMed

    McPartland, J M; Mein, E A

    1997-01-01

    Entrainment is the integration or harmonization of oscillators. All organisms pulsate with myriad electrical and mechanical rhythms. Many of these rhythms emanate from synchronized pulsating cells (eg, pacemaker cells, cortical neurons). The cranial rhythmic impulse is an oscillation recognized by many bodywork practitioners, but the functional origin of this impulse remains uncertain. We propose that the cranial rhythmic impulse is the palpable perception of entrainment, a harmonic frequency that incorporates the rhythms of multiple biological oscillators. It is derived primarily from signals between the sympathetic and parasympathetic nervous systems. Entrainment also arises between organisms. The harmonizing of coupled oscillators into a single, dominant frequency is called frequency-selective entrainment. We propose that this phenomenon is the modus operandi of practitioners who use the cranial rhythmic impulse in craniosacral treatment. Dominant entrainment is enhanced by "centering," a technique practiced by many healers, for example, practitioners of Chinese, Tibetan, and Ayurvedic medicine. We explore the connections between centering, the cranial rhythmic impulse, and craniosacral treatment.

  15. Methods for High-Density Admixture Mapping of Disease Genes

    PubMed Central

    Patterson, Nick; Hattangadi, Neil; Lane, Barton; Lohmueller, Kirk E.; Hafler, David A.; Oksenberg, Jorge R.; Hauser, Stephen L.; Smith, Michael W.; O’Brien, Stephen J.; Altshuler, David; Daly, Mark J.; Reich, David

    2004-01-01

    Admixture mapping (also known as “mapping by admixture linkage disequilibrium,” or MALD) has been proposed as an efficient approach to localizing disease-causing variants that differ in frequency (because of either drift or selection) between two historically separated populations. Near a disease gene, patient populations descended from the recent mixing of two or more ethnic groups should have an increased probability of inheriting the alleles derived from the ethnic group that carries more disease-susceptibility alleles. The central attraction of admixture mapping is that, since gene flow has occurred recently in modern populations (e.g., in African and Hispanic Americans in the past 20 generations), it is expected that admixture-generated linkage disequilibrium should extend for many centimorgans. High-resolution marker sets are now becoming available to test this approach, but progress will require (a) computational methods to infer ancestral origin at each point in the genome and (b) empirical characterization of the general properties of linkage disequilibrium due to admixture. Here we describe statistical methods to estimate the ancestral origin of a locus on the basis of the composite genotypes of linked markers, and we show that this approach accurately estimates states of ancestral origin along the genome. We apply this approach to show that strong admixture linkage disequilibrium extends, on average, for 17 cM in African Americans. Finally, we present power calculations under varying models of disease risk, sample size, and proportions of ancestry. Studying ∼2,500 markers in ∼2,500 patients should provide power to detect many regions contributing to common disease. A particularly important result is that the power of an admixture mapping study to detect a locus will be nearly the same for a wide range of mixture scenarios: the mixture proportion should be 10%–90% from both ancestral populations. PMID:15088269

  16. Food entrainment: major and recent findings.

    PubMed

    Carneiro, Breno T S; Araujo, John F

    2012-01-01

    Mammals exhibit daily anticipatory activity to cycles of food availability. Studies on such food anticipatory activity (FAA) have been conducted mainly in nocturnal rodents. They have identified FAA as the behavioral output of a food entrained oscillator (FEO), separate of the known light entrained oscillator (LEO) located in the suprachiasmatic nucleus (SCN) of hypothalamus. Here we briefly review the main characteristics of FAA. Also, we present results on four topics of food anticipation: (1) possible input signals to FEO, (2) FEO substrate, (3) the importance of canonical clock genes for FAA, and (4) potential practical applications of scheduled feeding. This mini review is intended to introduce the subject of food entrainment to those unfamiliar with it but also present them with relevant new findings on the issue.

  17. Observational estimates of detrainment and entrainment in non-precipitating shallow cumulus

    NASA Astrophysics Data System (ADS)

    Norgren, M. S.; Small, J. D.; Jonsson, H. H.; Chuang, P. Y.

    2016-01-01

    Vertical transport associated with cumulus clouds is important to the redistribution of gases, particles, and energy, with subsequent consequences for many aspects of the climate system. Previous studies have suggested that detrainment from clouds can be comparable to the updraft mass flux, and thus represents an important contribution to vertical transport. In this study, we describe a new method to deduce the amounts of gross detrainment and entrainment experienced by non-precipitating cumulus clouds using aircraft observations. The method utilizes equations for three conserved variables: cloud mass, total water, and moist static energy. Optimizing these three equations leads to estimates of the mass fractions of adiabatic mixed-layer air, entrained air and detrained air that the sampled cloud has experienced. The method is applied to six flights of the CIRPAS Twin Otter during the Gulf of Mexico Atmospheric Composition and Climate Study (GoMACCS) which took place in the Houston, Texas region during the summer of 2006 during which 176 small, non-precipitating cumuli were sampled. Using our novel method, we find that, on average, these clouds were comprised of 30 to 70 % mixed-layer air, with entrained air comprising most of the remainder. The mass fraction of detrained air was usually very small, less than 2 %, although values larger than 10 % were found in 15 % of clouds. Entrained and detrained air mass fractions both increased with altitude, consistent with some previous observational studies. The largest detrainment events were almost all associated with air that was at their level of neutral buoyancy, which has been hypothesized in previous modeling studies. This new method could be readily used with data from other previous aircraft campaigns to expand our understanding of detrainment for a variety of cloud systems.

  18. Ozone conservation and entrainment in cumulus congestus

    NASA Technical Reports Server (NTRS)

    Pearson, R., Jr.; Weaver, C. J.

    1989-01-01

    This study demonstrates that ozone mixing ratio is conserved during moist convection and can be used as a tracer for cloud entrainment studies. The approach is to apply mixing line analysis to pairs of liquid water potential temperature, total water mixing ratio, O3 and pseudo-equivalent potential temperature derived from aircraft penetrations of growing cumulus congestus. Conclusions about entrainment from the mixing diagrams employing O3 agree with those using thermodynamic quantities. Any disagreement uncovered deficiencies in the water substance measurement technique.

  19. Effectiveness of mineral admixtures in reducing ASR expansion

    SciTech Connect

    Xu, G.J.Z.; Watt, D.F.; Hudec, P.P.

    1995-08-01

    This paper investigates the effectiveness of eight mineral admixtures in reducing the alkali silica(te) reactivity of cement mortar. The admixtures include one class F fly ash, a condensed silica fume, a ground fiberglass, three glass containing waste materials, and two inert fillers (carbon and calcium carbonate). Mortar bar expansion, the change in evaporable water content, the evidence of reaction and the composition of reaction products were studied. It was found that shale is the only reactive component of the sand and the effectiveness of admixtures in reducing alkali-silica reaction depends largely on the chemical composition of the admixtures. Ground fiberglass is very effective in controlling the alkali silica reaction, while inert fillers have only a dilution effect. It is thought that admixtures reduce ASR expansion by two reactions: (1) pozzolanic reaction that reduces the permeability of concrete and entraps some fraction of the alkali ions; (2) alkali silica reaction that consumes most of the available alkali ions and thereby prevents the reaction between alkalis and aggregate.

  20. Testing for Ancient Admixture between Closely Related Populations

    PubMed Central

    Durand, Eric Y.; Patterson, Nick; Reich, David; Slatkin, Montgomery

    2011-01-01

    One enduring question in evolutionary biology is the extent of archaic admixture in the genomes of present-day populations. In this paper, we present a test for ancient admixture that exploits the asymmetry in the frequencies of the two nonconcordant gene trees in a three-population tree. This test was first applied to detect interbreeding between Neandertals and modern humans. We derive the analytic expectation of a test statistic, called the D statistic, which is sensitive to asymmetry under alternative demographic scenarios. We show that the D statistic is insensitive to some demographic assumptions such as ancestral population sizes and requires only the assumption that the ancestral populations were randomly mating. An important aspect of D statistics is that they can be used to detect archaic admixture even when no archaic sample is available. We explore the effect of sequencing error on the false-positive rate of the test for admixture, and we show how to estimate the proportion of archaic ancestry in the genomes of present-day populations. We also investigate a model of subdivision in ancestral populations that can result in D statistics that indicate recent admixture. PMID:21325092

  1. Maximum-likelihood estimation of admixture proportions from genetic data.

    PubMed Central

    Wang, Jinliang

    2003-01-01

    For an admixed population, an important question is how much genetic contribution comes from each parental population. Several methods have been developed to estimate such admixture proportions, using data on genetic markers sampled from parental and admixed populations. In this study, I propose a likelihood method to estimate jointly the admixture proportions, the genetic drift that occurred to the admixed population and each parental population during the period between the hybridization and sampling events, and the genetic drift in each ancestral population within the interval between their split and hybridization. The results from extensive simulations using various combinations of relevant parameter values show that in general much more accurate and precise estimates of admixture proportions are obtained from the likelihood method than from previous methods. The likelihood method also yields reasonable estimates of genetic drift that occurred to each population, which translate into relative effective sizes (N(e)) or absolute average N(e)'s if the times when the relevant events (such as population split, admixture, and sampling) occurred are known. The proposed likelihood method also has features such as relatively low computational requirement compared with previous ones, flexibility for admixture models, and marker types. In particular, it allows for missing data from a contributing parental population. The method is applied to a human data set and a wolflike canids data set, and the results obtained are discussed in comparison with those from other estimators and from previous studies. PMID:12807794

  2. Impact of reduced near-field entrainment of overpressured volcanic jets on plume development

    USGS Publications Warehouse

    Saffaraval, Farhad; Solovitz, Stephen A.; Ogden, Darcy E.; Mastin, Larry G.

    2012-01-01

    Volcanic plumes are often studied using one-dimensional analytical models, which use an empirical entrainment ratio to close the equations. Although this ratio is typically treated as constant, its value near the vent is significantly reduced due to flow development and overpressured conditions. To improve the accuracy of these models, a series of experiments was performed using particle image velocimetry, a high-accuracy, full-field velocity measurement technique. Experiments considered a high-speed jet with Reynolds numbers up to 467,000 and exit pressures up to 2.93 times atmospheric. Exit gas densities were also varied from 0.18 to 1.4 times that of air. The measured velocity was integrated to determine entrainment directly. For jets with exit pressures near atmospheric, entrainment was approximately 30% less than the fully developed level at 20 diameters from the exit. At pressures nearly three times that of the atmosphere, entrainment was 60% less. These results were introduced into Plumeria, a one-dimensional plume model, to examine the impact of reduced entrainment. The maximum column height was only slightly modified, but the critical radius for collapse was significantly reduced, decreasing by nearly a factor of two at moderate eruptive pressures.

  3. Inclined gravity currents filling basins: The influence of Reynolds number on entrainment into gravity currents

    NASA Astrophysics Data System (ADS)

    Hogg, Charlie A. R.; Dalziel, Stuart B.; Huppert, Herbert E.; Imberger, Jörg

    2015-09-01

    In many important natural and industrial systems, gravity currents of dense fluid feed basins. Examples include lakes fed by dense rivers and auditoria supplied with cooled air by ventilation systems. As we will show, the entrainment into such buoyancy driven currents can be influenced by viscous forces. Little work, however, has examined this viscous influence and how entrainment varies with the Reynolds number, Re. Using the idea of an entrainment coefficient, E, we derive a mathematical expression for the rise of the front at the top of the dense fluid ponding in a basin, where the horizontal cross-sectional area of the basin varies linearly with depth. We compare this expression to experiments on gravity currents with source Reynolds numbers, Res, covering the broad range 100 < Res < 1500. The form of the observed frontal rises was well approximated by our theory. By fitting the observed frontal rises to the theoretical form with E as the free parameter, we find a linear trend for E(Res) over the range 350 < Res < 1100, which is in the transition to turbulent flow. In the experiments, the entrainment coefficient, E, varied from 4 × 10-5 to 7 × 10-2. These observations show that viscous damping can be a dominant influence on gravity current entrainment in the laboratory and in geophysical flows in this transitional regime.

  4. Liquid Droplet Detachment and Entrainment in Microscale Flows

    NASA Astrophysics Data System (ADS)

    Hidrovo, Carlos

    2005-11-01

    In this talk we will present a first order study of liquid water detachment and entrainment into air flows in hydrophobic microchannels. Silicon based microstructures consisting of 23 mm long U-shaped channels of different geometry were used for this purpose. The structures are treated with a Molecular Vapor Deposition (MVD) process that renders them hydrophobic. Liquid water is injected through a side slot located 2/3 of the way downstream from the air channel inlet. The water entering the air channel beads up into slugs or droplets that grow in size at this injection location until they fill and flood the channel or are carried away by the air flow. The slugs/droplets dimensions at detachment are correlated against superficial gas velocity and proper dimensionless parameters are postulated and examined to compare hydrodynamic forces against surface tension. It is found that slug/droplet detachment is dominated by two main forces: pressure gradient drag, arising from confinement of a viscous flow in the channel, and inertial drag, arising from the stagnation of the air due to obstruction by the slugs/droplets. A detachment regime map is postulated based on the relative importance of these forces under different flow conditions.

  5. Washing of the AW-101 entrained solids

    SciTech Connect

    GJ Lumetta

    2000-03-31

    BNFL Inc. (BNFL) is under contract with the US Department of Energy, River Protection Project (DOE-RPP) to design, construct, and operate facilities for treating wastes stored in the single-shell and double-shell tanks at the Hanford Site, Richland, Washington. The DOE-BNFL RPP contract identifies two feeds to the waste treatment plant: (1) primarily liquid low-activity waste (LAW) consisting of less than 2 wt% entrained solids and (2) high-level waste (HLW) consisting of 10 to 200 g/L solids slurry. This report describes the results of a test conducted by Battelle to assess the effects of inhibited water washing on the composition of the entrained solids in the diluted AW-101 low-activity waste (LAW) sample. The objective of this work was to gather data on the solubility of the AW-101 entrained solids in 0.01 M NaOH, so that BNFL can evaluate whether these solids require caustic leaching. The work was conducted according to test plan BNFL-TP-29953-9, Rev. 0, LAW Entrained Solids Water Wash and Caustic Leach Testing. The test went according to plan, with no deviations from the test plan. Based on the results of the 0.01 M NaOH washing, a decision was made by BNFL to not proceed with the caustic leaching test. The composition of the washed solids was such that caustic leaching would not result in significant reduction in the immobilized HLW volume.

  6. Calvert Cliffs zooplankton entrainment study. Final report

    SciTech Connect

    Bradley, B.P.

    1980-01-01

    Entrainment studies to evaluate plant effects on zooplankton were conducted at the Calvert Cliffs Nuclear Plant. Specific effects tested were (a) the spatial and temporal variation of zooplankton density; (b) pump sampling efficiency; (c) delayed mortality; (d) vital staining as an indicator of mortality.

  7. Laminar Entrained Flow Reactor (Fact Sheet)

    SciTech Connect

    Not Available

    2014-02-01

    The Laminar Entrained Flow Reactor (LEFR) is a modular, lab scale, single-user reactor for the study of catalytic fast pyrolysis (CFP). This system can be employed to study a variety of reactor conditions for both in situ and ex situ CFP.

  8. Attentional entrainment and perceived event duration

    PubMed Central

    McAuley, J. Devin; Fromboluti, Elisa Kim

    2014-01-01

    This study considered the contribution of dynamic attending theory (DAT) and attentional entrainment to systematic distortions in perceived event duration. Three experiments were conducted using an auditory oddball paradigm, in which listeners judged the duration of a deviant (oddball) stimulus embedded within a series of identical (standard) stimuli. To test for a role of attentional entrainment in perceived oddball duration, oddballs were presented at either temporally expected (on time) or unexpectedly early or late time points relative to extrapolation of the context rhythm. Consistent with involvement of attentional entrainment in perceived duration, duration judgements about the oddball were least distorted when the oddball occurred on time with respect to the entrained rhythm, whereas durations of early and late oddballs were perceived to be shorter and longer, respectively. This pattern of results was independent of the absolute time interval preceding the oddball. Moreover, as expected, an irregularly timed sequence context weakened observed differences between oddballs with on-time and late onsets. Combined with other recent work on the role of temporal preparation in duration distortions, the present findings allot at least a portion of the oddball effect to increased attention to events that are more expected, rather than on their unexpected nature per se. PMID:25385779

  9. Plume rise, entrainment and dispersion in turbulent winds

    NASA Astrophysics Data System (ADS)

    Netterville, Dennett D. J.

    This paper describes a new analytical model which combines within one theoretical framework several aspects of the phenomena of plume rise, dispersion, thermal stratification and ambient turbulence. The model is based in part on knowledge gained from recent investigations of flow within free shear layers. The observations suggest a simple model for the turbulent mixing process, which accounts for the known entrainment of air into smoke plumes by plume-generated turbulence. More importantly, the model also predicts a path by which ambient turbulence causes reverse entrainment of plume material into the surrounding fluids. This gives rise to a new 'extrainment' term in each of the plume momentum and buoyancy equations. These equations are solved for a turbulent atmosphere of arbitrary thermal stability, and yield plume trajectories which gradually level off at final rise heights that depend on the degree of thermal stratification and on the scale and intensity of ambient turbulence. A link between plume rise and dispersion is identified by means of the concentration species equation, which is solved to show that the plume acts along its length as a distributed source of passively dispersing material. The new theory, specialized for an adiabatic atmosphere, plus the familiar x2/3 law and a semi-empirical final rise theory from the literature, are all compared against full-scale data on plume rise in turbulent winds. The new theory significantly improves the accuracy of estimates of plume trajectory and final plume height. The price for this improved predictive ability is the need to evaluate the air temperature and its gradient at plume level, and the corresponding intensity and scale of turbulent air movement. This is no longer a technical obstacle since recently developed SODAR and RASS remote sensors have this capability.

  10. Mass Entrainment Rate of an Ideal Momentum Turbulent Round Jet

    NASA Astrophysics Data System (ADS)

    Medrano, Fermín Franco; Fukumoto, Yasuhide; Marika Velte, Clara; Hodžić, Azur

    2017-03-01

    We propose a two-phase-fluid model for a full-cone turbulent round jet that describes its dynamics in a simple but comprehensive manner with only the apex angle of the cone being a disposable parameter. The basic assumptions are that (i) the jet is statistically stationary and that (ii) it can be approximated by a mixture of two fluids with their phases in dynamic equilibrium. To derive the model, we impose conservation of the initial volume and total momentum fluxes. Our model equations admit analytical solutions for the composite density and velocity of the two-phase fluid, both as functions of the distance from the nozzle, from which the dynamic pressure and the mass entrainment rate are calculated. Assuming a far-field approximation, we theoretically derive a constant entrainment rate coefficient solely in terms of the cone angle. Moreover, we carry out experiments for a single-phase turbulent air jet and show that the predictions of our model compare well with this and other experimental data of atomizing liquid jets.

  11. Cloud top entrainment instability and cloud top distributions

    NASA Technical Reports Server (NTRS)

    Boers, Reinout; Spinhirne, James D.

    1990-01-01

    Classical cloud-top entrainment instability condition formulation is discussed. A saturation point diagram is used to investigate the details of mixing in cases where the cloud-top entrainment instability criterion is satisfied.

  12. Speech Entrainment Compensates for Broca's Area Damage

    PubMed Central

    Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

    2015-01-01

    Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to speech entrainment. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during speech entrainment versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of speech entrainment to improve speech production and may help select patients for speech entrainment treatment. PMID:25989443

  13. Risk for rheumatic disease in relation to ethnicity and admixture

    PubMed Central

    Molokhia, Mariam; McKeigue, Paul

    2000-01-01

    Risk of systemic lupus erythematosus (SLE) is high in west Africans compared with Europeans, and risk of rheumatoid arthritis (RA) is high in Native Americans compared with Europeans. These differences are not accounted for by differences in allele or haplotype frequencies in the human leucocyte antigen (HLA) region or any other loci known to influence risk of rheumatic disease. Where there has been admixture between two or more ethnic groups that differ in risk of disease, studies of the relationship of disease risk to proportionate admixture can help to distinguish between genetic and environmental explanations for ethnic differences in disease risk and to map the genes underlying these differences. PMID:11094421

  14. Entrainment Zone Characteristics and Entrainment Rates in Cloud-Topped Boundary Layers from DYCOMS-II

    DTIC Science & Technology

    2012-03-01

    method . With this method , one must measure the mean ascent/descent of the atmosphere at the interface, , alongside the time rate of change of the...using a new method based on turbulence perturbations from high-rate turbulence samplings taken during the Dynamics and Chemistry of Marine...properties and the cloud-top entrainment rates using in situ aircraft measurements . The entrainment zone is defined objectively using a new method based

  15. Population admixture and high larval viability among urban toads

    PubMed Central

    Hase, Kazuko; Nikoh, Naruo; Shimada, Masakazu

    2013-01-01

    In terms of evolutionary biology, a population admixture of more than two distinct lineages may lead to strengthened genetic variation through hybridization. However, a population admixture arising from artificial secondary contact poses significant problems in conservation biology. In urban Tokyo, a population admixture has emerged from two lineages of Japanese common toad: native Bufo japonicus formosus and nonnative B. japonicus japonicus, of which the latter was introduced in the early 20th century. To evaluate the degree of genetic disturbance in the admixed population of these two subspecies, we analyzed genotypes of toads distributed within and outside Tokyo by assessing mtDNA and seven microsatellite loci. We found that the introduced B. japonicus japonicus genotype dominates six local populations in the Tokyo admixture zone and was clearly derived from past introgressive hybridization between the two subspecies. These observations were supported by morphological assessments. Furthermore, the average larval survival rate in Tokyo was significantly higher than that outside Tokyo, suggesting that the temporary contribution of introduced toads occurred through introgression. The fitness of toads in urban Tokyo may thus be increasing with the assistance of nonnative individuals. PMID:23789077

  16. Strong selection at MHC in Mexicans since admixture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the major histocompatibility complex (MHC) region Mexicans have excessive African ance...

  17. Worldwide patterns of genomic variation and admixture in gray wolves

    PubMed Central

    Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M.; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K.

    2016-01-01

    The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter–gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. PMID:26680994

  18. A Spatial Framework for Understanding Population Structure and Admixture

    PubMed Central

    Bradburd, Gideon S.; Ralph, Peter L.; Coop, Graham M.

    2016-01-01

    Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build “geogenetic maps,” which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix. PMID:26771578

  19. Worldwide patterns of genomic variation and admixture in gray wolves.

    PubMed

    Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K

    2016-02-01

    The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter-gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic.

  20. Microbiologic quality assurance for intravenous admixtures in a small hospital.

    PubMed

    Doss, H L; James, J D; Killough, D M; Snodgrass, G L

    1982-05-01

    A simple, inexpensive method for end-product testing of intravenous admixtures for microbial contamination was developed and tested by challenging the system with low levels of microbial contamination. The 16-step procedure for testing i.v. admixtures for microbial contamination used total-sample membrane filtration A 0.2-micrometers Nalgene filter unit was used; the entire contents of randomly selected admixtures were to be filtered and discarded under the procedure. Filters were incubated on sheep-blood agar plates for 48 hours at 35 degrees C. Low concentrations (Klebsiella pneumoniae and Pseudomonas aeruginosa were used to contaminate admixtures deliberately to challenge the system. Seventy-two solutions were contaminated with each microbe; 72 other solutions were inoculated with sterile 0.9% sodium chloride; and 72 uninoculated solutions served as controls. Filtration was performed on a laboratory bench to prevent contamination of the laminar-flow hood. In deliberately contaminated solutions, a mean of 82% of inoculated organisms was isolated by membrane filtration. Five instances of adventitious contamination were noted among the 288 samples; these occurred across all experimental groups. Cost per sample was $4-5. This system can be used by hospital pharmacists to produce documentation of quality assurance that will be acceptable in terms of cost, simplicity, and accuracy.

  1. The dynamic effects of moisture on the entrainment and transport of sand by wind

    NASA Astrophysics Data System (ADS)

    Wiggs, G. F. S.; Baird, A. J.; Atherton, R. J.

    2004-04-01

    There is an increasing awareness of the influence of surface moisture on aeolian entrainment and transport of sediment. Existing wind tunnel studies have shown the impact of a limited range of moisture contents on entrainment thresholds but similar investigations are lacking in the field. The research reported here investigated the influence of changes in surface moisture content on sand entrainment and transport on a meso-tidal beach in Anglesey, North Wales. High frequency (1 Hz) wind velocities measured with hot-wire anemometers were combined with grain impact data from a Sensit monitor and mass flux measurements from a standard sand trap. Surface and near-surface moisture contents were assessed gravimetrically from surface sand scrapes and also directly by using a ThetaProbe. Critical threshold values for entrainment were specified using a modified form of the time fraction equivalence method (Stout, J.E., Zobeck, T.M., 1996a. Establishing the threshold condition for soil movement in wind-eroding fields. Proceedings of the International Conference on Air Pollution from Agricultural Operations. MWPS C-3, Kansas City, 7-9 February 1996, pp. 65-71). Results indicate a time-dependent change in dominant control of the sand transport system from moisture to wind speed, dependent upon the moisture content of the surface sediment. This interchange between controlling parameters on both entrainment and transport was very sensitive to prevailing moisture conditions and took place over a period of minutes to hours. Under conditions experienced in the experiments presented here, the critical moisture threshold for sediment entrainment was determined to be between 4% and 6%, higher than the 1-4% specified in previous wind tunnel experiments. Furthermore, a moisture content of nearly 2% (where moisture was adhered to transported sediment) appeared to have little or no impact on the rate of sand flux.

  2. Impacts of winds on volcanic plumes - Do crossflows challenge the Morton, Turner and Taylor entrainment assumptions?

    NASA Astrophysics Data System (ADS)

    Aubry, T. J.; Jellinek, M.; Carazzo, G.

    2014-12-01

    Volcanic plumes rising into Earth's atmosphere are influenced strongly by tropospheric and stratospheric winds. In the absence of wind effects, Morton, Taylor and Turner (MTT, 1956) used a similarity theory to show that the maximum height for these flows is governed mostly by the atmospheric stratification and the buoyancy flux at the vent. Crucially, in developing this theory MTT introduced the "entrainment hypothesis" in which the rate of entrainment of atmospheric air by the large eddies forming at the edge of the plume is proportional to some bulk velocity. In the presence of wind a key question is whether the additional stirring deforms eddies sufficiently to alter their mixing properties. In particular, under what conditions will wind effects enhance or reduce entrainment? Can these effects be captured in a modified form of the MTT similarity theory or is a new theory required? We use an extensive set of experiments on wind-forced turbulent plumes in order to overcome the restricted dynamical conditions explored in previous experimental studies. We introduce a new regime parameter allowing to quantitatively separate three distinct plume regimes. Remarkably, we show that for reasonable conditions on Earth, the major effects of wind can still be captured by a modified scaling law derived from the self-similar theory of MTT, with an entrainment rate including the contributions of wind. However, analysis of the turbulence motions in our experiments shows that even weak winds introduce large asymmetries in the structure of entraining eddies. Our successful application of a mean entrainment rate at the plume edge and a modified MTT similarity theory is, thus, surprising. Does this apparent contradiction simply reveal the way turbulent instabilities driven by wind manifest themselves?

  3. AW-101 entrained solids - Solubility versus temperature

    SciTech Connect

    GJ Lumetta; RC Lettau; GF Piepel

    2000-03-31

    This report describes the results of a test conducted by Battelle to assess the solubility of the solids entrained in the diluted AW-101 low-activity waste (LAW) sample. BNFL requested Battelle to dilute the AW-1-1 sample using de-ionized water to mimic expected plant operating conditions. BNFL further requested Battelle to assess the solubility of the solids present in the diluted AW-101 sample versus temperature conditions of 30, 40, and 50 C. BNFL requested these tests to assess the composition of the LAW supernatant and solids versus expected plant-operating conditions. The work was conducted according to test plan BNFL-TP-29953-7, Rev. 0, Determination of the Solubility of LAW Entrained Solids. The test went according to plan, with no deviations from the test plan.

  4. Exploring Entrainment Patterns of Human Emotion in Social Media.

    PubMed

    He, Saike; Zheng, Xiaolong; Zeng, Daniel; Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace.

  5. Alignment strategies for the entrainment of music and movement rhythms.

    PubMed

    Moens, Bart; Leman, Marc

    2015-03-01

    Theories of entrainment assume that spontaneous entrainment emerges from dynamic laws that operate via mediators on interactions, whereby entrainment is facilitated if certain conditions are fulfilled. In this study, we show that mediators can be built that affect the entrainment of human locomotion to music. More specifically, we built D-Jogger, a music player that functions as a mediator between music and locomotion rhythms. The D-Jogger makes it possible to manipulate the timing differences between salient moments of the rhythms (beats and footfalls) through the manipulation of the musical period and phase, which affect the condition in which entrainment functions. We conducted several experiments to explore different strategies for manipulating the entrainment of locomotion and music. The results of these experiments showed that spontaneous entrainment can be manipulated, thereby suggesting different strategies on how to embark. The findings furthermore suggest a distinction among different modalities of entrainment: finding the beat (the most difficult part of entrainment), keeping the beat (easier, as a temporal scheme has been established), and being in phase (no entrainment is needed because the music is always adapted to the human rhythm). This study points to a new avenue of research on entrainment and opens new perspectives for the neuroscience of music.

  6. Exploring Entrainment Patterns of Human Emotion in Social Media

    PubMed Central

    Luo, Chuan; Zhang, Zhu

    2016-01-01

    Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace. PMID:26953692

  7. Auditory-motor entrainment in vocal mimicking species

    PubMed Central

    2010-01-01

    We have recently found robust evidence of motor entrainment to auditory stimuli in multiple species of non-human animal, all of which were capable of vocal mimicry. In contrast, the ability remained markedly absent in many closely related species incapable of vocal mimicry. This suggests that vocal mimicry may be a necessary precondition for entrainment. However, within the vocal mimicking species, entrainment appeared non-randomly, suggesting that other components besides vocal mimicry play a role in the capacity and tendency to entrain. Here we discuss potential additional factors involved in entrainment. New survey data show that both male and female parrots are able to entrain, and that the entrainment capacity appears throughout the lifespan. We suggest routes for future study of entrainment, including both developmental studies in species known to entrain and further work to detect entrainment in species not well represented in our dataset. These studies may shed light on additional factors necessary for entrainment in addition to vocal mimicry. PMID:20714417

  8. Maternal entrainment of tau mutant hamsters.

    PubMed

    Viswanathan, N; Davis, F C

    1992-01-01

    Maternal entrainment of the circadian wheel-running activity rhythm was examined in Syrian hamsters heterozygous for a single gene mutation (tau) that affects the free-running period of circadian rhythms. Heterozygous tau pups were born to and raised by wild-type mothers under constant dim light. The pups' wheel-running activity was recorded after weaning on postnatal day 18 or 24. Pups weaned on day 18 had an average free-running period of 21.70 hr, demonstrating that the tau phenotype was fully expressed at this age. Using the activity onset of the postnatal free-running rhythms as a phase reference, we estimated the phase relationships between the pups and their mothers on days 18 and 24. In contrast to results with wild-type pups, the activity rhythms of tau pups were not in phase with the rhythms of their wild-type mothers; that is, activity onsets of mothers and pups did not coincide. The pups did, however, show synchrony among themselves, indicating that they had been exposed to a synchronizing signal sometime during development. It is likely that this synchronizing signal was provided by the mothers, since pups from different litters showed phase relationships similar to those of their mothers. Thus the mothers provided a signal that was sufficient to cause entrainment, despite the 2-hr difference in free-running period between the mothers and pups. Although the pups' activity rhythms appeared to have been entrained by the mothers, they were clearly free-running by postnatal day 18. The mechanism for entrainment is lost during the course of development, despite continued interaction between the mothers and pups.

  9. Rod Driven Frequency Entrainment and Resonance Phenomena

    PubMed Central

    Salchow, Christina; Strohmeier, Daniel; Klee, Sascha; Jannek, Dunja; Schiecke, Karin; Witte, Herbert; Nehorai, Arye; Haueisen, Jens

    2016-01-01

    A controversy exists on photic driving in the human visual cortex evoked by intermittent photic stimulation. Frequency entrainment and resonance phenomena are reported for frequencies higher than 12 Hz in some studies while missing in others. We hypothesized that this might be due to different experimental conditions, since both high and low intensity light stimulation were used. However, most studies do not report radiometric measurements, which makes it impossible to categorize the stimulation according to photopic, mesopic, and scotopic vision. Low intensity light stimulation might lead to scotopic vision, where rod perception dominates. In this study, we investigated photic driving for rod-dominated visual input under scotopic conditions. Twelve healthy volunteers were stimulated with low intensity light flashes at 20 stimulation frequencies, leading to rod activation only. The frequencies were multiples of the individual alpha frequency (α) of each volunteer in the range from 0.40 to 2.30∗α. Three hundred and six-channel whole head magnetoencephalography recordings were analyzed in time, frequency, and spatiotemporal domains with the Topographic Matching Pursuit algorithm. We found resonance phenomena and frequency entrainment for stimulations at or close to the individual alpha frequency (0.90–1.10∗α) and half of the alpha frequency (0.40–0.55∗α). No signs of resonance and frequency entrainment phenomena were revealed around 2.00∗α. Instead, on-responses at the beginning and off-responses at the end of each stimulation train were observed for the first time in a photic driving experiment at frequencies of 1.30–2.30∗α, indicating that the flicker fusion threshold was reached. All results, the resonance and entrainment as well as the fusion effects, provide evidence for rod-dominated photic driving in the visual cortex. PMID:27588002

  10. Rod Driven Frequency Entrainment and Resonance Phenomena.

    PubMed

    Salchow, Christina; Strohmeier, Daniel; Klee, Sascha; Jannek, Dunja; Schiecke, Karin; Witte, Herbert; Nehorai, Arye; Haueisen, Jens

    2016-01-01

    A controversy exists on photic driving in the human visual cortex evoked by intermittent photic stimulation. Frequency entrainment and resonance phenomena are reported for frequencies higher than 12 Hz in some studies while missing in others. We hypothesized that this might be due to different experimental conditions, since both high and low intensity light stimulation were used. However, most studies do not report radiometric measurements, which makes it impossible to categorize the stimulation according to photopic, mesopic, and scotopic vision. Low intensity light stimulation might lead to scotopic vision, where rod perception dominates. In this study, we investigated photic driving for rod-dominated visual input under scotopic conditions. Twelve healthy volunteers were stimulated with low intensity light flashes at 20 stimulation frequencies, leading to rod activation only. The frequencies were multiples of the individual alpha frequency (α) of each volunteer in the range from 0.40 to 2.30(∗)α. Three hundred and six-channel whole head magnetoencephalography recordings were analyzed in time, frequency, and spatiotemporal domains with the Topographic Matching Pursuit algorithm. We found resonance phenomena and frequency entrainment for stimulations at or close to the individual alpha frequency (0.90-1.10(∗)α) and half of the alpha frequency (0.40-0.55(∗)α). No signs of resonance and frequency entrainment phenomena were revealed around 2.00(∗)α. Instead, on-responses at the beginning and off-responses at the end of each stimulation train were observed for the first time in a photic driving experiment at frequencies of 1.30-2.30(∗)α, indicating that the flicker fusion threshold was reached. All results, the resonance and entrainment as well as the fusion effects, provide evidence for rod-dominated photic driving in the visual cortex.

  11. The effect of acceleration on turbulent entrainment

    NASA Astrophysics Data System (ADS)

    Breidenthal, Robert E.

    2008-12-01

    A new class of self-similar turbulent flows is proposed, which exhibits dramatically reduced entrainment rates. Under strong acceleration, the rotation period of the large-scale vortices is forced to decrease linearly in time. In ordinary unforced turbulence, the rotation period always increases linearly with time, at least in the mean. However, by imposing an exponential acceleration on the flow, the vortex rotation period is forced to become the e-folding timescale of the acceleration. If the e-folding timescale itself decreases linearly in time, the forcing is 'super-exponential', characterized by an acceleration parameter α. Based on dimensional and heuristic arguments, a model suggests that the dissipation rate is an exponential function of α and the dimensions of the conserved quantity of the flow. Acceleration decreases the dissipation and entrainment rates in all canonical laboratory flows except for Rayleigh-Taylor. Experiments of exponential jets and super-exponential transverse jets are in accord with the model. As noted by Johari, acceleration is the only known means of affecting the entrainment rate of the far-field jet. Numerical simulations of Rayleigh-Taylor flow by Cook and Greenough are also consistent. In the limit of large acceleration, vortices do not move far before their rotation period changes substantially. In this sense, extreme acceleration corresponds to stationary vortices.

  12. Foaming and Antifoaming and Gas Entrainment in Radioactive Waste Preteatment and Immobilization Processes

    SciTech Connect

    Wasan, Darsh T.; Nikolov, Alex

    2005-06-01

    The objectives of this research effort are to develop a fundamental understanding of the physico-chemical mechanisms that produce foaming and air entrainment in the DOE High Level (HLW) and Low Activity (LAW) radioactive waste separation and immobilization processes, and to develop and test advanced antifoam/defoaming/rheology modifier agents. Antifoams/rheology modifiers developed from this research will be tested using non-radioactive simulants of the radioactive wastes obtained from Hanford and the Savannah River Site (SRS).

  13. Alkali-silicate admixture for cement composites incorporating pozzolan or blast furnace slag

    SciTech Connect

    Zivica, V. . Inst. of construction and Architecture)

    1993-09-01

    This research was devoted to the study of the influence of the developed alkali-silicate admixture (AS admixture) on mortar properties. The obtained results shown that the admixture significantly increased the strength of the mortars made from portland cement (PC) and silica fume (SF) or blast furnace slag (SL). For example after 24 h hardening of mortar (30% SF + 70% PC), with the admixture, reached value of compression strength 18,7 MPa opposite to the value of 5.6 MPa of control mortar (100% PC). The same accelerating effect of AS admixture was observed also with mortar incorporating slag and with slag mortar (100% SL). Further results show that the mortars with AS admixture had an increased content of hydration products and substantially more dense pore structure than mortars of the same composition, but without the admixture.

  14. On the use of crystalline admixtures in cement based construction materials: from porosity reducers to promoters of self healing

    NASA Astrophysics Data System (ADS)

    Ferrara, Liberato; Krelani, Visar; Moretti, Fabio

    2016-08-01

    The project detailed in this paper aims at a thorough characterization of the effects of crystalline admixtures, currently employed as porosity reducing admixtures, on the self-healing capacity of the cementitious composites, i.e. their capacity to completely or partially re-seal cracks and, in case, also exhibit recovery of mechanical properties. The problem has been investigated with reference to both a normal strength concrete (NSC) and a high performance fibre reinforced cementitious composite (HPFRCC). In the latter case, the influence of flow-induced fibre alignment has also been considered in the experimental investigation. With reference to either 3-point (for NSC) or 4-point (for HPFRCC) bending tests performed up to controlled crack opening and up to failure, respectively before and after exposure/conditioning recovery of stiffness and stress bearing capacity has been evaluated to assess the self-healing capacity. In a durability-based design framework, self-healing indices to quantify the recovery of mechanical properties will also be defined. In NSC, crystalline admixtures are able to promote up to 60% of crack sealing even under exposure to open air. In the case of HPFRCCs, which would already feature autogenous healing capacity because of their peculiar mix compositions, the synergy between the dispersed fibre reinforcement and the action of the crystalline admixture has resulted in a likely ‘chemical pre-stressing’ of the same reinforcement, from which the recovery of mechanical performance of the material has greatly benefited, up to levels even higher than the performance of the virgin un-cracked material.

  15. Liquid entrainment at an upward oriented vertical branch line from a horizontal pipe

    NASA Astrophysics Data System (ADS)

    Welter, Kent Byron

    Under simulated accident conditions, tees in the primary coolant loop of a Pressurized Water Reactor (PWR) can deviate from their original design purpose and become separators that effectively remove core heat sink capacity. This method of primary coolant removal is a phenomenological subset of phase separation known as liquid entrainment, whereby liquid is forced from its original path by the inertia of the gas. A comprehensive literature review revealed common deficiencies in previous studies. The Westinghouse AP600 advanced reactor design was chosen to assess the validity of entrainment models. Following a systematic scaling analysis of the prototypic design a model separate effects test was proposed and constructed at Oregon State University. Just under 100 tests were run to fill the deficiencies found in the literature review. New data from the Air-water Test Loop for Advanced Thermal-hydraulic Studies (ATLATS) could not be predicted by published correlations. A new theoretical model for predicting liquid entrainment onset and steady state entrainment was developed. Comparison with all available data shows a marked improvement for predicting the mass flow rate out the vertical branch.

  16. Entrained liquid fraction calculation in adiabatic disperse-annular flows at low rate in film

    NASA Astrophysics Data System (ADS)

    Yagov, V. V.; Minko, M. V.

    2016-04-01

    In this work, we continue our study [1] and extend further an approach to low reduced pressures. An approximate model of droplets entrainment from the laminar film surface and an equation for calculating entrainment intensity are proposed. To carry out direct verification of this equation using experimental data is extremely difficult because the integral effect—liquid flow rate in a film at a dynamic equilibrium between entrainment and deposition—is usually measured in the experiments. The balance between flows of droplets entrainment and deposition corresponds to the dynamic equilibrium because of turbulent diffusion. The transcendental equation, which was obtained on the basis of this balance, contains one unknown numerical factor and allows one to calculate the liquid rate. Comparing calculation results with the experimental data for the water-air and water-helium flows at low reduced pressures (less than 0.03) has shown their good agreement at the universal value of a numerical constant, if an additional dimensionless parameter, a fourth root of vaporliquid densities ratio, is introduced. The criterion that determines the boundary of using methods of this work and that of [1] in calculations and that reflects effect of pressure and state of film surface on distribution of the liquid in the annular flow is proposed; the numerical value of this criterion has been determined.

  17. Viscous-inviscid calculations of jet entrainment effects on the subsonic flow over nozzle afterbodies

    NASA Technical Reports Server (NTRS)

    Wilmoth, R. G.

    1980-01-01

    A viscous-inviscid interaction model was developed to account for jet entrainment effects in the prediction of the subsonic flow over nozzle afterbodies. The model is based on the concept of a weakly interacting shear layer in which the local streamline deflections due to entrainment are accounted for by a displacement-thickness type of correction to the inviscid plume boundary. The entire flow field is solved in an iterative manner to account for the effects on the inviscid external flow of the turbulent boundary layer, turbulent mixing and chemical reactions in the shear layer, and the inviscid jet exhaust flow. The components of the computational model are described, and numerical results are presented to illustrate the interactive effects of entrainment on the overall flow structure. The validity of the model is assessed by comparisons with data obtained form flow-field measurements on cold-air jet exhausts. Numerical results and experimental data are also given to show the entrainment effects on nozzle boattail drag under various jet exhaust and free-stream flow conditions.

  18. The role of induced entrainment in past stratiform cloud seeding experiments

    NASA Astrophysics Data System (ADS)

    Walcek, C. J.

    2010-12-01

    In the late 1940s, probably the most effective and visually-obvious cloud seeding demonstrations showed that supercooled stratiform clouds could be cleared by seeding with dry ice, dropped from aircraft flying above a cloud deck. Numerous well-documents photos show areas 1-2 miles wide cleared along a flight track. The accepted mechanism of cloud clearing assumed that dry ice induced ice formation in the supercooled liquid cloud, followed by growth of ice at the expense of water, with the larger ice particles ultimately falling as snow. The mechanism was amplified by dynamic feedbacks induced by latent heat release (warming) as liquid water froze, thus propagating the dynamic and freezing/precipitation cycle laterally away from the flight track. Here we show that probably a more important effect is the entrainment and EVAPORATION of cloud water induced by turbulent mixing in the aircraft wake. Under many conditions, evaporation induced by turbulence can generate mixtures of air that are COLDER than the cloudy air or the air above the cloud, thus initiating unstable DOWNWARD (negatively-buoyant) motions, which will self-propagate laterally away from a turbulent flight track. We present here the range of environmental conditions where entrainment/evaporation would be most likely to occur in terms of the temperature difference between cloudy air and air just above cloud top, and the relative humidity of air above cloud top at different temperatures and altitudes in the atmosphere. It is suggested here that past cloud seeding experiments had little to do with glaciation, and more likely resulted from induced entrainment followed by evaporation and downward motions of negatively buoyant air resulting from cloud-top entrainment instability. Buoyancy and condensed water content of mixtures of cloudy air and cloud-free air immediately above cloud top vs. the mixing proportions. A supercooled cloud containing 0.1 g/kg liquid water at 600 mb, -20 degrees C is mixed with air

  19. Admixture facilitates genetic adaptations to high altitude in Tibet

    PubMed Central

    Jeong, Choongwon; Alkorta-Aranburu, Gorka; Basnyat, Buddha; Neupane, Maniraj; Witonsky, David B.; Pritchard, Jonathan K.; Beall, Cynthia M.; Di Rienzo, Anna

    2015-01-01

    Admixture is recognized as a widespread feature of human populations, renewing interest in the possibility that genetic exchange can facilitate adaptations to new environments. Studies of Tibetans revealed candidates for high-altitude adaptations in the EGLN1 and EPAS1 genes, associated with lower hemoglobin concentration. However, the history of these variants or that of Tibetans remains poorly understood. Here, we analyze genotype data for the Nepalese Sherpa, and find that Tibetans are a mixture of ancestral populations related to the Sherpa and Han Chinese. EGLN1 and EPAS1 genes show a striking enrichment of high-altitude ancestry in the Tibetan genome, indicating that migrants from low altitude acquired adaptive alleles from the highlanders. Accordingly, the Sherpa and Tibetans share adaptive hemoglobin traits. This admixture-mediated adaptation shares important features with adaptive introgression. Therefore, we identify a novel mechanism, beyond selection on new mutations or on standing variation, through which populations can adapt to local environments. PMID:24513612

  20. Differential rescue of light- and food-entrainable circadian rhythms.

    PubMed

    Fuller, Patrick M; Lu, Jun; Saper, Clifford B

    2008-05-23

    When food is plentiful, circadian rhythms of animals are powerfully entrained by the light-dark cycle. However, if animals have access to food only during their normal sleep cycle, they will shift most of their circadian rhythms to match the food availability. We studied the basis for entrainment of circadian rhythms by food and light in mice with targeted disruption of the clock gene Bmal1, which lack circadian rhythmicity. Injection of a viral vector containing the Bmal1 gene into the suprachiasmatic nuclei of the hypothalamus restored light-entrainable, but not food-entrainable, circadian rhythms. In contrast, restoration of the Bmal1 gene only in the dorsomedial hypothalamic nucleus restored the ability of animals to entrain to food but not to light. These results demonstrate that the dorsomedial hypothalamus contains a Bmal1-based oscillator that can drive food entrainment of circadian rhythms.

  1. How to Achieve Fast Entrainment? The Timescale to Synchronization

    PubMed Central

    Granada, Adrián E.; Herzel, Hanspeter

    2009-01-01

    Entrainment, where oscillators synchronize to an external signal, is ubiquitous in nature. The transient time leading to entrainment plays a major role in many biological processes. Our goal is to unveil the specific dynamics that leads to fast entrainment. By studying a generic model, we characterize the transient time to entrainment and show how it is governed by two basic properties of an oscillator: the radial relaxation time and the phase velocity distribution around the limit cycle. Those two basic properties are inherent in every oscillator. This concept can be applied to many biological systems to predict the average transient time to entrainment or to infer properties of the underlying oscillator from the observed transients. We found that both a sinusoidal oscillator with fast radial relaxation and a spike-like oscillator with slow radial relaxation give rise to fast entrainment. As an example, we discuss the jet-lag experiments in the mammalian circadian pacemaker. PMID:19774087

  2. On-line ultrasonic gas entrainment monitor

    DOEpatents

    Day, Clifford K.; Pedersen, Herbert N.

    1978-01-01

    Apparatus employing ultrasonic energy for detecting and measuring the quantity of gas bubbles present in liquids being transported through pipes. An ultrasonic transducer is positioned along the longitudinal axis of a fluid duct, oriented to transmit acoustic energy radially of the duct around the circumference of the enclosure walls. The back-reflected energy is received centrally of the duct and interpreted as a measure of gas entrainment. One specific embodiment employs a conical reflector to direct the transmitted acoustic energy radially of the duct and redirect the reflected energy back to the transducer for reception. A modified embodiment employs a cylindrical ultrasonic transducer for this purpose.

  3. Entrainment and mixing in thrust augmenting ejectors

    NASA Technical Reports Server (NTRS)

    Bernal, L.; Sarohia, V.

    1983-01-01

    An experimental investigation of two-dimensional thrust augmenting ejector flows has been conducted. Measurements of the shroud surface pressure distribution, mean velocity, turbulent intensities and Reynolds stresses were made in two shroud geometries at various primary nozzle pressure ratios. The effects of shroud geometry and primary nozzle pressure ratio on the shroud surface pressure distribution, mean flow field and turbulent field were determined. From these measurements the evolution of mixing within the shroud of the primary flow and entrained fluid was obtained. The relationship between the mean flow field, the turbulent field and the shroud surface pressure distribution is discussed.

  4. Expedient Low-Temperature Concrete Admixtures for the Army

    DTIC Science & Technology

    1999-11-01

    admixture is to depress the freezing point of by weight of cement in reinforced concrete and is water. This function depends on a colligative not...recommended at all in pre-stressed concrete. property called molality-the number of parti- But, for expedient purposes where long-term cles (moles) that...the freezing point because, as noted, the benchmark, they nearly equaled the strengths the colligative behavior of chemicals can vary of control

  5. Adsorption of superplasticizer admixtures on alkali-activated slag pastes

    SciTech Connect

    Palacios, M. Houst, Y.F.; Bowen, P.; Puertas, F.

    2009-08-15

    Alkali-activated slag (AAS) binders are obtained by a manufacturing process less energy-intensive than ordinary Portland cement (OPC) and involves lower greenhouse gasses emission. These alkaline cements allow the production of high mechanical strength and durable concretes. In the present work, the adsorption of different superplasticizer admixtures (naphthalene-based, melamine-based and a vinyl copolymer) on the slag particles in AAS pastes using alkaline solutions with different pH values have been studied in detail. The effect of the superplasticizers on the yield stress and plastic viscosity of the AAS and OPC pastes have been also evaluated. The results obtained allowed us to conclude that the adsorption of the superplasticizers on AAS pastes is independent of the pH of the alkaline solutions used and lower than on OPC pastes. However, the effect of the admixtures on the rheological parameters depends directly on the type and dosage of the superplasticizer as well as of the binder used and, in the case of the AAS, on the pH of the alkaline activator solution. In 11.7-pH NaOH-AAS pastes the dosages of the superplasticizers required to attain similar reduction in the yield stress are ten-fold lower than for Portland cement. In this case the superplasticizers studied show a fluidizing effect considerably higher in 11.7-pH NaOH-AAS pastes than in OPC pastes. In 13.6-pH NaOH-AAS pastes, the only admixture observed to affect the rheological parameters is the naphthalene-based admixture due to its higher chemical stability in such extremely alkaline media.

  6. Extending Admixture Mapping to Nuclear Pedigrees: Application to Sarcoidosis

    PubMed Central

    McKeigue, Paul M.; Colombo, Marco; Agakov, Felix; Datta, Indrani; Levin, Albert; Favro, David; Gray-Montgomery, Courtney; Iannuzzi, Michael C.; Rybicki, Benjamin A.

    2013-01-01

    We describe statistical methods that extend the application of admixture mapping from unrelated individuals to nuclear pedigrees, allowing existing pedigree-based collections to be fully exploited. Computational challenges have been overcome by developing a fast algorithm that exploits the factorial structure of the underlying model of ancestry transitions. This has been implemented as an extension of the program ADMIXMAP. We demonstrate the application of the method to a study of sarcoidosis in African Americans that has previously been analyzed only as an admixture mapping study restricted to unrelated individuals. Although the ancestry signals detected in this pedigree analysis are generally similar to those detected in the earlier analysis of unrelated cases, we are able to extract more information and this yields a much sharper exclusion map; using the classical criterion of an LOD score of minus 2, the pedigree analysis is able to exclude a risk ratio of 2 or more associated with African ancestry over 96% of the genome, compared with only 83% in the earlier analysis of unrelated individuals only. Although the pedigree extension of ADMIXMAP can use ancestry-informative markers only at relatively low density, it can use imputed ancestry states from programs such as WINPOP or HAPMIX that use dense SNP marker genotypes for admixture mapping. This extends both the efficiency and the range of application of this powerful gene mapping method. PMID:23371909

  7. Admixture mapping identifies introgressed genomic regions in North American canids.

    PubMed

    vonHoldt, Bridgett M; Kays, Roland; Pollinger, John P; Wayne, Robert K

    2016-06-01

    Hybrid zones typically contain novel gene combinations that can be tested by natural selection in a unique genetic context. Parental haplotypes that increase fitness can introgress beyond the hybrid zone, into the range of parental species. We used the Affymetrix canine SNP genotyping array to identify genomic regions tagged by multiple ancestry informative markers that are more frequent in an admixed population than expected. We surveyed a hybrid zone formed in the last 100 years as coyotes expanded their range into eastern North America. Concomitant with expansion, coyotes hybridized with wolves and some populations became more wolflike, such that coyotes in the northeast have the largest body size of any coyote population. Using a set of 3102 ancestry informative markers, we identified 60 differentially introgressed regions in 44 canines across this admixture zone. These regions are characterized by an excess of exogenous ancestry and, in northeastern coyotes, are enriched for genes affecting body size and skeletal proportions. Further, introgressed wolf-derived alleles have penetrated into Southern US coyote populations. Because no wolves currently exist in this area, these alleles are unlikely to have originated from recent hybridization. Instead, they probably originated from intraspecific gene flow or ancient admixture. We show that grey wolf and coyote admixture has far-reaching effects and, in addition to phenotypically transforming admixed populations, allows for the differential movement of alleles from different parental species to be tested in new genomic backgrounds.

  8. Conditions for super-adiabatic droplet growth after entrainment mixing

    DOE PAGES

    Yang, Fan; Shaw, Raymond; Xue, Huiwen

    2016-07-29

    Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixedmore » parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the “super-adiabatic” growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. The findings have implications for the origin of large cloud droplets that may contribute to onset of collision–coalescence in warm clouds.« less

  9. Entrainment control in the Aplysia buccal ganglion

    NASA Astrophysics Data System (ADS)

    Hunter, John D.; Milton, John G.

    2000-03-01

    Many dynamical systems, such as neural networks, can be pushed into or out of an entrained state by varying a system parameter. However, implementing this control strategy in a real biological system remains a difficult problem since many biological effectors have multiple effects. An example is an inhibitory interneuron that generates a postsynaptic current with a constant component, which alters the firing rate of its target, and a time-varying component, which can have a variety of effects. Here we explore the effects of an inhibitory interneuron on the ability of a regularly spiking Aplysia buccal motoneuron to synchronize to an external periodic input. After measuring the Arnold tongue structure of the motoneuron's response to sinusoidal input, we drive the motoneuron to and from an entrained state (onto and off of a tongue) by using the interneuron as a rate controller. These observations indicate that rate control of synchronization is robust even in the case when effectors have multiple actions. Moreover, these results provide direct evidence that inhibitory interneurons can serve as a sensitive mechanism to control the synchronization of neural populations by producing only slight changes in neural firing rate.

  10. How important is intraspecific genetic admixture to the success of colonising populations?

    PubMed

    Rius, Marc; Darling, John A

    2014-04-01

    Genetic admixture of divergent intraspecific lineages is increasingly suspected to have an important role in the success of colonising populations. However, admixture is not a universally beneficial genetic phenomenon. Selection is typically expected to favour locally adapted genotypes and can act against admixed individuals, suggesting that there are some conditions under which admixture will have negative impacts on population fitness. Therefore, it remains unclear how often admixture acts as a true driver of colonisation success. Here, we review the population consequences of admixture and discuss its costs and benefits across a broad spectrum of ecological contexts. We critically evaluate the evidence for a causal role of admixture in successful colonisation, and consider that role more generally in driving population range expansion.

  11. Modeling of neutral entrainment in an FRC thruster

    SciTech Connect

    Brackbill, Jeremiah; Gimelshein, Natalia; Gimelshein, Sergey; Cambier, Jean-Luc; Ketsdever, Andrew

    2012-11-27

    Neutral entrainment in a field reversed configuration thruster is modeled numerically with an implicit PIC code extended to include thermal and chemical interactions between plasma and neutral particles. The contribution of charge exchange and electron impact ionization reactions is analyzed, and the sensitivity of the entrainment efficiency to the plasmoid translation velocity and neutral density is evaluated.

  12. Rhythm as a Coordinating Device: Entrainment with Disordered Speech

    ERIC Educational Resources Information Center

    Borrie, Stephanie A.; Liss, Julie M.

    2014-01-01

    Purpose: The rhythmic entrainment (coordination) of behavior during human interaction is a powerful phenomenon, considered essential for successful communication, supporting social and emotional connection, and facilitating sense-making and information exchange. Disruption in entrainment likely occurs in conversations involving those with speech…

  13. Entrainment of circadian rhythm by ambient temperature cycles in mice.

    PubMed

    Refinetti, Roberto

    2010-08-01

    Much is known about how environmental light-dark cycles synchronize circadian rhythms in animals. The ability of environmental cycles of ambient temperature to synchronize circadian rhythms has also been investigated extensively but mostly in ectotherms. In the present study, the synchronization of the circadian rhythm of running-wheel activity by environmental cycles of ambient temperature was studied in laboratory mice. Although all mice were successfully entrained by a light-dark cycle, only 60% to 80% of the mice were entrained by temperature cycles (24-32 degrees C or 24-12 degrees C), and attainment of stable entrainment seemed to take longer under temperature cycles than under a light-dark cycle. This suggests that ambient temperature cycles are weaker zeitgebers than light-dark cycles, which is consistent with the results of the few previous studies using mammalian species. Whereas 80% of the mice were entrained by 24-h temperature cycles, only 60% were entrained by 23-h cycles, and none was entrained by 25-h cycles. The results did not clarify whether entrainment by temperature cycles is caused directly by temperature or indirectly through a temperature effect on locomotor activity, but it is clear that the rhythm of running-wheel activity in mice can be entrained by ambient temperature cycles in the nonnoxious range.

  14. No Time To Kill: Entrainment and Accelerating Courseware Development.

    ERIC Educational Resources Information Center

    Millington, Paula Crnkovich

    This paper examines the concept of time in multimedia, World Wide Web-based courseware development. The biological concept of entrainment (the alignment of rhythms within and between systems) to accelerate courseware development is explored. The discussion begins with the foundational concepts of entrainment from biological systems and social…

  15. The Impact of Rhythmic Entrainment on a Person with Autism.

    ERIC Educational Resources Information Center

    Orr, Tracy Jo; Myles, Brenda Smith; Carlson, Judith K.

    1998-01-01

    A study investigated the impact of rhythmic entrainment on an 11-year-old girl with autism who engaged in head jerking and screaming. Rhythmic entrainment intervention was more effective when she exhibited behavior that resulted from a moderate level of stress and less effective when stressors were more severe. (CR)

  16. Practical handling of AIO admixtures – Guidelines on Parenteral Nutrition, Chapter 10

    PubMed Central

    Mühlebach, S.; Franken, C.; Stanga, Z.

    2009-01-01

    All-in-one admixtures (AIO-admixtures) provide safe, effective and low-risk PN (parenteral nutrition) for practically all indications and applications. Water, energy (carbohydrates and lipids), amino acids, vitamins and trace elements are infused together with PN either as industrially-manufactured AIO admixtures provided as two- or three-chamber bags (shelf life usually more than 12 months) completed with electrolytes and micronutrients where appropriate or as individually compounded ready-to-use AIO admixtures (compounding, usually prepared by a pharmacy on either a daily or weekly basis and stored at 2–8°C). Physico-chemical and microbial stability of an AIO admixture is essential for the safety and effectiveness of patient-specific PN, and its assurance requires specialist pharmaceutical knowledge. The stability should be documented for an application period of 24 (–48) hours. It is advisable to offer a limited selection of different PN regimes in each hospital. For reasons of drug and medication safety, PN admixtures prepared for individual patients must be correctly labelled and specifications for storage conditions must also be followed during transport. Monitoring is required where applicable. Micronutrients are usually administered separately to AIO admixtures. In case compatibility and stability have been well documented trace elements and/or combination preparations including water-soluble or water-soluble/fat soluble vitamin supplements can be added to PN admixtures under strict aseptic conditions. AIO admixtures are usually not used as vehicles for drugs (incompatibilities). PMID:20049073

  17. Macroscopic entrainment of periodically forced oscillatory ensembles.

    PubMed

    Popovych, Oleksandr V; Tass, Peter A

    2011-03-01

    Large-amplitude oscillations of macroscopic neuronal signals, such as local field potentials and electroencephalography or magnetoencephalography signals, are commonly considered as being generated by a population of mutually synchronized neurons. In a computational study in generic networks of phase oscillators and bursting neurons, however, we show that this common belief may be wrong if the neuronal population receives an external rhythmic input. The latter may stem from another neuronal population or an external, e.g., sensory or electrical, source. In that case the population field potential may be entrained by the rhythmic input, whereas the individual neurons are phase desynchronized both mutually and with their field potential. Intriguingly, the corresponding large-amplitude oscillations of the population mean field are generated by pairwise desynchronized neurons oscillating at frequencies shifted far away from the frequency of the macroscopic field potential.

  18. Mutual entrainment of bilaterally distributed circadian pacemaker.

    PubMed

    Page, T L; Caldarola, P C; Pittendrigh, C S

    1977-03-01

    The interactions between the bilaterally distributed components of the circadin system that controls the locomotor activity rhythm of the cockroach Leucophaea maderae were investigated in a series of surgical lesion experiments. Complete excision of one optic lobe (either right or left) or its surgical isolation from the central nervous system had no effect on the animals' ability to free-run in constant darkness nor was there any indication, as judged by postoperative pi values of any difference between left and right lobe pacemakers. However, these surgical procedures consistently resulted in a significant increase in tau over preoperative value while optic nerve section had no effect on tau. The propostion is developed that the left and right pacemakers in the two optic lobes are mutally coupled and that the compound pacemaker's period is shorter than either of its constituent pacemakers. It was also found that the integrity of either compound eye is sufficient to assure entrainment of both left and right pacemakers.

  19. A New Approach for Estimating Entrainment Rate in Cumulus Clouds

    SciTech Connect

    Lu C.; Liu, Y.; Yum, S. S.; Niu, S.; Endo, S.

    2012-02-16

    A new approach is presented to estimate entrainment rate in cumulus clouds. The new approach is directly derived from the definition of fractional entrainment rate and relates it to mixing fraction and the height above cloud base. The results derived from the new approach compare favorably with those obtained with a commonly used approach, and have smaller uncertainty. This new approach has several advantages: it eliminates the need for in-cloud measurements of temperature and water vapor content, which are often problematic in current aircraft observations; it has the potential for straightforwardly connecting the estimation of entrainment rate and the microphysical effects of entrainment-mixing processes; it also has the potential for developing a remote sensing technique to infer entrainment rate.

  20. Entrainment of neural oscillations as a modifiable substrate of attention.

    PubMed

    Calderone, Daniel J; Lakatos, Peter; Butler, Pamela D; Castellanos, F Xavier

    2014-06-01

    Brain operation is profoundly rhythmic. Oscillations of neural excitability shape sensory, motor, and cognitive processes. Intrinsic oscillations also entrain to external rhythms, allowing the brain to optimize the processing of predictable events such as speech. Moreover, selective attention to a particular rhythm in a complex environment entails entrainment of neural oscillations to its temporal structure. Entrainment appears to form one of the core mechanisms of selective attention, which is likely to be relevant to certain psychiatric disorders. Deficient entrainment has been found in schizophrenia and dyslexia and mounting evidence also suggests that it may be abnormal in attention-deficit/hyperactivity disorder (ADHD). Accordingly, we suggest that studying entrainment in selective-attention paradigms is likely to reveal mechanisms underlying deficits across multiple disorders.

  1. Complex Patterns of Genomic Admixture within Southern Africa

    PubMed Central

    Petersen, Desiree C.; Libiger, Ondrej; Tindall, Elizabeth A.; Hardie, Rae-Anne; Hannick, Linda I.; Glashoff, Richard H.; Mukerji, Mitali; Fernandez, Pedro; Haacke, Wilfrid; Schork, Nicholas J.; Hayes, Vanessa M.

    2013-01-01

    Within-population genetic diversity is greatest within Africa, while between-population genetic diversity is directly proportional to geographic distance. The most divergent contemporary human populations include the click-speaking forager peoples of southern Africa, broadly defined as Khoesan. Both intra- (Bantu expansion) and inter-continental migration (European-driven colonization) have resulted in complex patterns of admixture between ancient geographically isolated Khoesan and more recently diverged populations. Using gender-specific analysis and almost 1 million autosomal markers, we determine the significance of estimated ancestral contributions that have shaped five contemporary southern African populations in a cohort of 103 individuals. Limited by lack of available data for homogenous Khoesan representation, we identify the Ju/'hoan (n = 19) as a distinct early diverging human lineage with little to no significant non-Khoesan contribution. In contrast to the Ju/'hoan, we identify ancient signatures of Khoesan and Bantu unions resulting in significant Khoesan- and Bantu-derived contributions to the Southern Bantu amaXhosa (n = 15) and Khoesan !Xun (n = 14), respectively. Our data further suggests that contemporary !Xun represent distinct Khoesan prehistories. Khoesan assimilation with European settlement at the most southern tip of Africa resulted in significant ancestral Khoesan contributions to the Coloured (n = 25) and Baster (n = 30) populations. The latter populations were further impacted by 170 years of East Indian slave trade and intra-continental migrations resulting in a complex pattern of genetic variation (admixture). The populations of southern Africa provide a unique opportunity to investigate the genomic variability from some of the oldest human lineages to the implications of complex admixture patterns including ancient and recently diverged human lineages. PMID:23516368

  2. Forecasting Inundation from Debris Flows That Grow By Entraining Sediment

    NASA Astrophysics Data System (ADS)

    Reid, M. E.; Coe, J. A.; Brien, D. L.

    2014-12-01

    Destructive debris flows often grow, and extend their runouts, by entraining sediment as they travel. However, incorporating varied entrainment processes into physics-based flow routing models is challenging. As an alternative, we developed a relatively simple, automated method for forecasting the inundation hazards posed by debris flows that entrain sediment and coalesce from multiple flows. Within a drainage network, we amalgamate the effects of many possible debris flows with each flow volume proportional to an entrainment rate scaled by the upslope contributing area, and then use these volumes in the USGS GIS-based inundation model LAHARZ. Our approach only requires estimates of two parameters: spatial entrainment rate & maximum entrainment area or maximum volume. Our procedure readily integrates various sediment sources and it can portray different inundation hazard levels on a GIS-based map by varying our two parameters. We applied this approach to part of the Coast Range, southern Oregon, USA. Using aerial photography, we mapped debris flows triggered by a large 1996 rain event on a LiDAR-derived topographic base, and identified initiation locations, travel paths, and areas of channel erosion and deposition. Many catchments experienced multiple debris flows that coalesced downstream and about 95% of the debris flows entrained sediment as they traveled. Flows typically stopped entraining sediment before the upslope contributing area reached ~500,000 m2. We used pre- and post-debris-flow stereo photos to estimate spatial entrainment rates in four clear-cut catchments having both channel erosion and coalescence of flows; these rates varied from 0.12 to 0.2 m3/m2. GIS-based inundation maps, using our automated methods, are quite similar to the mapped flow paths and deposits. Given appropriate parameters, our approach could be applied to a variety of steep, channelized environments where entrainment is important, such as alpine and post-wildfire slopes.

  3. Ground-Based Remote Retrievals of Cumulus Entrainment Rates

    SciTech Connect

    Wagner, Timothy J.; Turner, David D.; Berg, Larry K.; Krueger, Steven K.

    2013-07-26

    While fractional entrainment rates for cumulus clouds have typically been derived from airborne observations, this limits the size and scope of available data sets. To increase the number of continental cumulus entrainment rate observations available for study, an algorithm for retrieving them from ground-based remote sensing observations has been developed. This algorithm, called the Entrainment Rate In Cumulus Algorithm (ERICA), uses the suite of instruments at the Southern Great Plains (SGP) site of the United States Department of Energy's Atmospheric Radiation Measurement (ARM) Climate Research Facility as inputs into a Gauss-Newton optimal estimation scheme, in which an assumed guess of the entrainment rate is iteratively adjusted through intercomparison of modeled liquid water path and cloud droplet effective radius to their observed counterparts. The forward model in this algorithm is the Explicit Mixing Parcel Model (EMPM), a cloud parcel model that treats entrainment as a series of discrete entrainment events. A quantified value for measurement uncertainty is also returned as part of the retrieval. Sensitivity testing and information content analysis demonstrate the robust nature of this method for retrieving accurate observations of the entrainment rate without the drawbacks of airborne sampling. Results from a test of ERICA on three months of shallow cumulus cloud events show significant variability of the entrainment rate of clouds in a single day and from one day to the next. The mean value of 1.06 km-¹ for the entrainment rate in this dataset corresponds well with prior observations and simulations of the entrainment rate in cumulus clouds.

  4. Activation analysis of admixtures in certain semiconductive materials

    NASA Technical Reports Server (NTRS)

    Artyukhin, P. I.; Gilbert, E. P.; Pronin, V. A.

    1978-01-01

    The use of extractions and chromatographic operations to separate macrobases, and to divide elements into groups convenient for gamma-spectrometric analysis is discussed. Methods are described for the activation detection of some impurities in silicon, arsenic, thallium, and trichloromethylsilane, on the basis of the extraction properties of bis(2-chlorethyl ether) and dimethylbenzylalkylammonium chloride. A schematic diagram of the extraction separation of elements-admixture is presented showing the aqueous and organic phases. The content percentage of the various elements are given in tables.

  5. Interethnic admixture and the evolution of Latin American populations

    PubMed Central

    Salzano, Francisco Mauro; Sans, Mónica

    2014-01-01

    A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues. PMID:24764751

  6. Characteristics of rice husk gasification in an entrained flow reactor.

    PubMed

    Zhao, Yijun; Sun, Shaozeng; Tian, Hongming; Qian, Juan; Su, Fengming; Ling, Feng

    2009-12-01

    Experiments were performed in an entrained flow reactor to better understand the characteristics of biomass gasification. Rice husk was used in this study. Effects of the gasification temperature (700, 800, 900 and 1000 degrees C) and the equivalence ratio in the range of 0.22-0.34 on the biomass gasification and the axial gas distribution in the reactor were studied. The results showed that reactions of CnHm were less important in the gasification process except cracking reactions which occurred at higher temperature. In the oxidization zone, reactions between char and oxygen had a more prevailing role. The optimal gasification temperature of the rice husk could be above 900 degrees C, and the optimal value of ER was 0.25. The gasification process was finished in 1.42 s when the gasification temperature was above 800 degrees C. A first order kinetic model was developed for describing rice husk air gasification characteristics and the relevant kinetic parameters were determined.

  7. Percentage entrainment of constituent loads in urban runoff, south Florida

    USGS Publications Warehouse

    Miller, R.A.

    1985-01-01

    Runoff quantity and quality data from four urban basins in south Florida were analyzed to determine the entrainment of total nitrogen, total phosphorus, total carbon, chemical oxygen demand, suspended solids, and total lead within the stormwater runoff. Land use of the homogeneously developed basins are residential (single family), highway, commercial, and apartment (multifamily). A computational procedure was used to calculate, for all storms that had water-quality data, the percentage of constituent load entrainment in specified depths of runoff. The plot of percentage of constituent load entrained as a function of runoff is termed the percentage-entrainment curve. Percentage-entrainment curves were developed for three different source areas of basin runoff: (1) the hydraulically effective impervious area, (2) the contributing area, and (3) the drainage area. With basin runoff expressed in inches over the contributing area, the depth of runoff required to remove 90 percent of the constituent load ranged from about 0.4 inch to about 1.4 inches; and to remove 80 percent, from about 0.3 to 0.9 inch. Analysis of variance, using depth of runoff from the contributing area as the response variable, showed that the factor 'basin' is statistically significant, but that the factor 'constituent' is not statistically significant in the forming of the percentage-entrainment curve. Evidently the sewerage design, whether elongated or concise in plan dictates the shape of the percentage-entrainment curve. The percentage-entrainment curves for all constituents were averaged for each basin and plotted against basin runoff for three source areas of runoff-the hydraulically effective impervious area, the contributing area, and the drainage area. The relative positions of the three curves are directly related to the relative sizes of the three source areas considered. One general percentage-entrainment curve based on runoff from the contributing area was formed by averaging across

  8. Tropical deep convection, entrainment, and dilution during the dynamo field campaign

    NASA Astrophysics Data System (ADS)

    Hannah, Walter

    more humid environment is better explained by a reduction of buoyancy dilution. An additional sensitivity experiment shows that entrainment and dilution are enhanced when convection is organized by the presence of vertical wind shear. The enhanced dilution is associated with entrainment of drier air on average. (Abstract shortened by UMI.).

  9. A Balanced Diet Is Necessary for Proper Entrainment Signals of the Mouse Liver Clock

    PubMed Central

    Hirao, Akiko; Tahara, Yu; Kimura, Ichiro; Shibata, Shigenobu

    2009-01-01

    Background The peripheral circadian clock in mice is entrained not only by light-dark cycles but also by daily restricted feeding schedules. Behavioral and cell culture experiments suggest an increase in glucose level as a factor in such feeding-induced entrainment. For application of feeding-induced entrainment in humans, nutrient content and dietary variations should be considered. Principal Finding To elucidate the food composition necessary for dietary entrainment, we examined whether complete or partial substitution of dietary nutrients affected phase shifts in liver clocks of mice. Compared with fasting mice or ad libitum fed mice, the liver bioluminescence rhythm advanced by 3–4 h on the middle day in Per2::luciferase knock-in mice that were administered a standard mouse diet, i.e. AIN-93M formula [0.6–0.85 g/10 g mouse BW] (composition: 14% casein, 47% cornstarch, 15% gelatinized cornstarch, 10% sugar, 4% soybean oil, and 10% other [fiber, vitamins, minerals, etc.]), for 2 days. When each nutrient was tested alone (100% nutrient), an insignificant weak phase advance was found to be induced by cornstarch and soybean oil, but almost no phase advance was induced by gelatinized cornstarch, high-amylose cornstarch, glucose, sucrose, or casein. A combination of glucose and casein without oil, vitamin, or fiber caused a significant phase advance. When cornstarch in AIN-93M was substituted with glucose, sucrose, fructose, polydextrose, high-amylose cornstarch, or gelatinized cornstarch, the amplitude of phase advance paralleled the increase in blood glucose concentration. Conclusions Our results strongly suggest the following: (1) balanced diets containing carbohydrates/sugars and proteins are good for restricted feeding-induced entrainment of the peripheral circadian clock and (2) a balanced diet that increases blood glucose, but not by sugar alone, is suitable for entrainment. These findings may assist in the development of dietary recommendations for on

  10. Cortical entrainment to music and its modulation by expertise

    PubMed Central

    Doelling, Keith B.; Poeppel, David

    2015-01-01

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta–theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15–30 Hz)—often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition. PMID:26504238

  11. Cortical entrainment to music and its modulation by expertise.

    PubMed

    Doelling, Keith B; Poeppel, David

    2015-11-10

    Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta-theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15-30 Hz)-often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition.

  12. Gender and population history: sex bias revealed by studying genetic admixture of Ngazidja population (Comoro Archipelago).

    PubMed

    Gourjon, Géraud; Boëtsch, Gilles; Degioanni, Anna

    2011-04-01

    The peopling of Comoro Archipelago is defined by successive waves of migration from three main areas: the East African Coast (Bantu-speaking populations), the Persia and Arabian Peninsula, and Southeast Asia (especially Indonesia). It follows an apparent classic trihybrid admixture model. To better understand the Comorian population admixture dynamics, we analyzed the contributions of these three historical parental components to its genetic pool. To enhance accuracy and reliability, we used both classical and molecular markers. Samples consist of published data: blood group frequencies, 14 KIR genes, 19 mitochondrial DNA SNPs (to highlight female migrations), 14 Y chromosome SNPs (male migrations). We revealed distinct admixture patterns for autosomal and uniparental markers. KIR gene frequencies had never been used to estimate admixture rates, this being a first assessment of their informative power in admixture studies. To avoid major methodological and statistical bias, we determined admixture coefficients through nine well-tried estimators and their associated software programs (ADMIX95, ADMIX, admix 2.0, LEA, LEADMIX, and Mistura). Results from mtDNA and Y chromosome markers point to an important sex-bias in the admixture event. The original Bantu gene pool received a predominant male-mediated contribution from the Arabian Peninsula and Persia, and a female-mediated contribution from Southeast Asia. Admixture rates estimated from autosomal KIR gene markers point also to an unexpected elevated Austronesian contribution.

  13. Patterns of admixture and population structure in native populations of Northwest North America.

    PubMed

    Verdu, Paul; Pemberton, Trevor J; Laurent, Romain; Kemp, Brian M; Gonzalez-Oliver, Angelica; Gorodezky, Clara; Hughes, Cris E; Shattuck, Milena R; Petzelt, Barbara; Mitchell, Joycelynn; Harry, Harold; William, Theresa; Worl, Rosita; Cybulski, Jerome S; Rosenberg, Noah A; Malhi, Ripan S

    2014-08-01

    The initial contact of European populations with indigenous populations of the Americas produced diverse admixture processes across North, Central, and South America. Recent studies have examined the genetic structure of indigenous populations of Latin America and the Caribbean and their admixed descendants, reporting on the genomic impact of the history of admixture with colonizing populations of European and African ancestry. However, relatively little genomic research has been conducted on admixture in indigenous North American populations. In this study, we analyze genomic data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples of the Pacific Northwest in British Columbia and Southeast Alaska, populations with a well-documented history of contact with European and Asian traders, fishermen, and contract laborers. We find that the indigenous populations of the Pacific Northwest have higher gene diversity than Latin American indigenous populations. Among the Pacific Northwest populations, interior groups provide more evidence for East Asian admixture, whereas coastal groups have higher levels of European admixture. In contrast with many Latin American indigenous populations, the variance of admixture is high in each of the Pacific Northwest indigenous populations, as expected for recent and ongoing admixture processes. The results reveal some similarities but notable differences between admixture patterns in the Pacific Northwest and those in Latin America, contributing to a more detailed understanding of the genomic consequences of European colonization events throughout the Americas.

  14. Effects of Different Mineral Admixtures on the Properties of Fresh Concrete

    PubMed Central

    Nuruddin, Muhammad Fadhil; Shafiq, Nasir

    2014-01-01

    This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer. PMID:24701196

  15. How important is intraspecific genetic admixture to the success of colonising populations?

    EPA Science Inventory

    Genetic admixture of divergent lineages is increasingly suspected to play an important role in the success of colonizing populations. This has become a particularly prominent theme in the literature on biological invasions, where admixture is now commonly proposed as an important...

  16. [Effect of admixture of betamethasone butyrate propionate ointment on preservative efficacy].

    PubMed

    Ohtani, Michiteru; Nakai, Tatsurou; Ohsawa, Kouji; Kim, Soan; Matsumoto, Mika; Etoh, Takafumi; Kariya, Satoru; Kanou, Syoujirou; Uchino, Katsuyoshi

    2002-12-01

    Twenty percent of dermatologists have experienced a separation of water or deterioration of topical corticosteroids mixed with commercially available ointments and/or creams. However, few investigations of this deterioration of admixtures have been reported. To assess the effects of preservatives in preventing microbial contamination of these admixtures, we attempted to investigate the concentration of preservative agents in admixtures and the microbial contamination of these admixtures with a topical corticosteroid ointment (Antebate). The concentration of parabens was reduced by half using an admixture of corticosteroid ointment with four types of moisturizing creams, Urepearl, Pastaronsoft, Hirudoid, and Hirudoidsoft. After a further 3 months, no decrease in parabens was seen. No microbial contamination was found in any admixture stored at room temperature for 1 week and touched two times daily with a finger. The concentration and ratio of the parabens in the aqueous phase and oil phase were entirely different in the admixtures before being centrifuged. The aqueous phase of the admixtures of the oil/water (O/W)-type emulsions of Urepearl and Hirudoid was not found to have microbial contamination immediately after being centrifuged. All aqueous phases stored at room temperature or in a refrigerator for 1 week and touched with a finger twice daily exhibited microbial contamination. These experiments demonstrated that O/W-type emulsions, in which the water easily separates from the bases, should be thoroughly mixed to prevent microbial contamination.

  17. Bayesian analysis of an admixture model with mutations and arbitrarily linked markers.

    PubMed

    Excoffier, Laurent; Estoup, Arnaud; Cornuet, Jean-Marie

    2005-03-01

    We introduce here a Bayesian analysis of a classical admixture model in which all parameters are simultaneously estimated. Our approach follows the approximate Bayesian computation (ABC) framework, relying on massive simulations and a rejection-regression algorithm. Although computationally intensive, this approach can easily deal with complex mutation models and partially linked loci, and it can be thoroughly validated without much additional computation cost. Compared to a recent maximum-likelihood (ML) method, the ABC approach leads to similarly accurate estimates of admixture proportions in the case of recent admixture events, but it is found superior when the admixture is more ancient. All other parameters of the admixture model such as the divergence time between parental populations, the admixture time, and the population sizes are also well estimated, unlike the ML method. The use of partially linked markers does not introduce any particular bias in the estimation of admixture, but ML confidence intervals are found too narrow if linkage is not specifically accounted for. The application of our method to an artificially admixed domestic bee population from northwest Italy suggests that the admixture occurred in the last 10-40 generations and that the parental Apis mellifera and A. ligustica populations were completely separated since the last glacial maximum.

  18. Patterns of Admixture and Population Structure in Native Populations of Northwest North America

    PubMed Central

    Verdu, Paul; Pemberton, Trevor J.; Laurent, Romain; Kemp, Brian M.; Gonzalez-Oliver, Angelica; Gorodezky, Clara; Hughes, Cris E.; Shattuck, Milena R.; Petzelt, Barbara; Mitchell, Joycelynn; Harry, Harold; William, Theresa; Worl, Rosita; Cybulski, Jerome S.; Rosenberg, Noah A.; Malhi, Ripan S.

    2014-01-01

    The initial contact of European populations with indigenous populations of the Americas produced diverse admixture processes across North, Central, and South America. Recent studies have examined the genetic structure of indigenous populations of Latin America and the Caribbean and their admixed descendants, reporting on the genomic impact of the history of admixture with colonizing populations of European and African ancestry. However, relatively little genomic research has been conducted on admixture in indigenous North American populations. In this study, we analyze genomic data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples of the Pacific Northwest in British Columbia and Southeast Alaska, populations with a well-documented history of contact with European and Asian traders, fishermen, and contract laborers. We find that the indigenous populations of the Pacific Northwest have higher gene diversity than Latin American indigenous populations. Among the Pacific Northwest populations, interior groups provide more evidence for East Asian admixture, whereas coastal groups have higher levels of European admixture. In contrast with many Latin American indigenous populations, the variance of admixture is high in each of the Pacific Northwest indigenous populations, as expected for recent and ongoing admixture processes. The results reveal some similarities but notable differences between admixture patterns in the Pacific Northwest and those in Latin America, contributing to a more detailed understanding of the genomic consequences of European colonization events throughout the Americas. PMID:25122539

  19. Flicker Regularity Is Crucial for Entrainment of Alpha Oscillations

    PubMed Central

    Notbohm, Annika; Herrmann, Christoph S.

    2016-01-01

    Previous studies have shown that alpha oscillations (8–13 Hz) in human electroencephalogram (EEG) modulate perception via phase-dependent inhibition. If entrained to an external driving force, inhibition maxima and minima of the oscillation appear more distinct in time and make potential phase-dependent perception predictable. There is an ongoing debate about whether visual stimulation is suitable to entrain alpha oscillations. On the one hand, it has been argued that a series of light flashes results in transient event-related responses (ERPs) superimposed on the ongoing EEG. On the other hand, it has been demonstrated that alpha oscillations become entrained to a series of light flashes if they are presented at a certain temporal regularity. This raises the question under which circumstances a sequence of light flashes causes entrainment, i.e., whether an arrhythmic stream of light flashes would also result in entrainment. Here, we measured detection rates in response to visual targets at two opposing stimulation phases during rhythmic and arrhythmic light stimulation. We introduce a new measure called “behavioral modulation depth” to determine differences in perception. This measure is capable of correcting for inevitable artifacts that occur in visual detection tasks during visual stimulation. The physical concept of entrainment predicts that increased stimulation intensity should produce stronger entrainment. Thus, two experiments with medium (Experiment 1) and high (Experiment 2) stimulation intensity were performed. Data from the first experiment show that the behavioral modulation depth (alpha phase-dependent differences in detection threshold) increases with increasing entrainment of alpha oscillations. Furthermore, individual alpha phase delays of entrained alpha oscillations determine the behavioral modulation depth: the largest behavioral modulation depth can be found if targets presented during the minimum of the entrained oscillation are

  20. Effect of various intake designs on zooplankton entrainment

    SciTech Connect

    Dycus, D.L.

    1983-03-01

    Field studies were conducted at the intakes of three Tennessee Valley Authority electric power plants to determine whether intake design is a feasible means of mitigating effects on zooplankton by minimizing the quantity entrained. Three intake designs were evaluated: one with a shallow skimmer wall, one with a deep skimmer wall, and one with no skimmer wall. Several studies indicated possible differences between day and night in the quantity of zooplankton entrained. None of these studies indicated that the intake designs studied minimized the quantity of zooplankton entrained because the quantities in the intake canals were similar to the quantities in the source water body.

  1. Flicker Regularity Is Crucial for Entrainment of Alpha Oscillations.

    PubMed

    Notbohm, Annika; Herrmann, Christoph S

    2016-01-01

    Previous studies have shown that alpha oscillations (8-13 Hz) in human electroencephalogram (EEG) modulate perception via phase-dependent inhibition. If entrained to an external driving force, inhibition maxima and minima of the oscillation appear more distinct in time and make potential phase-dependent perception predictable. There is an ongoing debate about whether visual stimulation is suitable to entrain alpha oscillations. On the one hand, it has been argued that a series of light flashes results in transient event-related responses (ERPs) superimposed on the ongoing EEG. On the other hand, it has been demonstrated that alpha oscillations become entrained to a series of light flashes if they are presented at a certain temporal regularity. This raises the question under which circumstances a sequence of light flashes causes entrainment, i.e., whether an arrhythmic stream of light flashes would also result in entrainment. Here, we measured detection rates in response to visual targets at two opposing stimulation phases during rhythmic and arrhythmic light stimulation. We introduce a new measure called "behavioral modulation depth" to determine differences in perception. This measure is capable of correcting for inevitable artifacts that occur in visual detection tasks during visual stimulation. The physical concept of entrainment predicts that increased stimulation intensity should produce stronger entrainment. Thus, two experiments with medium (Experiment 1) and high (Experiment 2) stimulation intensity were performed. Data from the first experiment show that the behavioral modulation depth (alpha phase-dependent differences in detection threshold) increases with increasing entrainment of alpha oscillations. Furthermore, individual alpha phase delays of entrained alpha oscillations determine the behavioral modulation depth: the largest behavioral modulation depth can be found if targets presented during the minimum of the entrained oscillation are compared to

  2. Rhythm as an affordance for the entrainment of movement.

    PubMed

    Cummins, Fred

    2009-01-01

    A general account of rhythm in human behaviour is provided, according to which rhythm inheres in the affordance that a signal provides for the entrainment of movement on the part of a perceiver. This generic account is supported by an explication of the central concepts of affordance and entrainment. When viewed in this light, rhythm appears as the correct explanandum to account for coordinated behaviour in a wide variety of situations, including such core senses as dance and the production of music. Speech may appear to be only marginally rhythmical under such an account, but several experimental studies reveal that speech, too, has the potential to entrain movement.

  3. Antidromic His capture during entrainment of orthodromic AVRT.

    PubMed

    Nair, Krishnakumar; Selvaraj, Raja; Farid, Talha; Nanthakumar, Kumaraswamy

    2010-09-01

    A narrow QRS tachycardia with eccentric atrial activation is presented with features favoring an orthodromic atrioventricular re-entrant tachycardia including an extranodal paraHisian response, and a short corrected post-pacing interval to tachycardia cycle length difference following right ventricular entrainment. However, during entrainment, the H-H interval was entrained by the pacing train several beats prior to the A-A interval which would suggest an atrioventricular nodal re-entry tachycardia. We discuss the diagnosis and its mechanism.

  4. Auditory-motor entrainment in vocal mimicking species: Additional ontogenetic and phylogenetic factors.

    PubMed

    Schachner, Adena

    2010-05-01

    We have recently found robust evidence of motor entrainment to auditory stimuli in multiple species of non-human animal, all of which were capable of vocal mimicry. In contrast, the ability remained markedly absent in many closely related species incapable of vocal mimicry. This suggests that vocal mimicry may be a necessary precondition for entrainment. However, within the vocal mimicking species, entrainment appeared non-randomly, suggesting that other components besides vocal mimicry play a role in the capacity and tendency to entrain. Here we discuss potential additional factors involved in entrainment. New survey data show that both male and female parrots are able to entrain, and that the entrainment capacity appears throughout the lifespan. We suggest routes for future study of entrainment, including both developmental studies in species known to entrain and further work to detect entrainment in species not well represented in our dataset. These studies may shed light on additional factors necessary for entrainment in addition to vocal mimicry.

  5. The Emerging Role of Admixture in the Pharmacogenetics of Puerto Rican Hispanics

    PubMed Central

    Duconge, Jorge; Ruaño, Gualberto

    2011-01-01

    Admixture is of great relevance to the clinical application of pharmacogenetics and personalized medicine. Preliminary findings in Puerto Ricans further substantiate the argument for admixture as a critical covariate in a customized DNA-guided warfarin dosing algorithm. To this purpose, a genome-wide approach that incorporates admixture as an independent predictor of dose variability in DNA-guided algorithms has been postulated. Admixture is expected to be able to reveal some relevant associations in the genetic epidemiology of Hispanics and will be indispensable to assure that pharmacogenomic research can be pursued in such mixed populations. Consequently, the clinical utility of knowing an individual’s genotype before initiating drug treatment in Puerto Ricans, and Hispanics in general, will finally be untangled by developing a “Genetic Prescription Model” that takes admixture into consideration. This approach will help lead physicians and patients to their desired treatment goal, resulting in more effective healthcare in admixed people. PMID:23227441

  6. Granular motions near the threshold of entrainment

    NASA Astrophysics Data System (ADS)

    Valyrakis, Manousos; Alexakis, athanasios-Theodosios

    2016-04-01

    Our society is continuously impacted by significant weather events many times resulting in catastrophes that interrupt our normal way of life. In the context of climate change and increasing urbanisation these "extreme" hydrologic events are intensified both in magnitude and frequency, inducing costs of the order of billions of pounds. The vast majority of such costs and impacts (even more to developed societies) are due to water related catastrophes such as the geomorphic action of flowing water (including scouring of critical infrastructure, bed and bank destabilisation) and flooding. New tools and radically novel concepts are in need, to enable our society becoming more resilient. This presentation, emphasises the utility of inertial sensors in gaining new insights on the interaction of flow hydrodynamics with the granular surface at the particle scale and for near threshold flow conditions. In particular, new designs of the "smart-sphere" device are discussed with focus on the purpose specific sets of flume experiments, designed to identify the exact response of the particle resting at the bed surface for various below, near and above threshold flow conditions. New sets of measurements are presented for particle entrainment from a Lagrangian viewpoint. Further to finding direct application in addressing real world challenges in the water sector, it is shown that such novel sensor systems can also help the research community (both experimentalists and computational modellers) gain a better insight on the underlying processes governing granular dynamics.

  7. Music and emotions: from enchantment to entrainment.

    PubMed

    Vuilleumier, Patrik; Trost, Wiebke

    2015-03-01

    Producing and perceiving music engage a wide range of sensorimotor, cognitive, and emotional processes. Emotions are a central feature of the enjoyment of music, with a large variety of affective states consistently reported by people while listening to music. However, besides joy or sadness, music often elicits feelings of wonder, nostalgia, or tenderness, which do not correspond to emotion categories typically studied in neuroscience and whose neural substrates remain largely unknown. Here we review the similarities and differences in the neural substrates underlying these "complex" music-evoked emotions relative to other more "basic" emotional experiences. We suggest that these emotions emerge through a combination of activation in emotional and motivational brain systems (e.g., including reward pathways) that confer its valence to music, with activation in several other areas outside emotional systems, including motor, attention, or memory-related regions. We then discuss the neural substrates underlying the entrainment of cognitive and motor processes by music and their relation to affective experience. These effects have important implications for the potential therapeutic use of music in neurological or psychiatric diseases, particularly those associated with motor, attention, or affective disturbances.

  8. Organic Entrainment and Preservation in Volcanic Glasses

    NASA Technical Reports Server (NTRS)

    Wilhelm, Mary Beth; Ojha, Lujendra; Brunner, Anna E.; Dufek, Josef D.; Wray, James Joseph

    2014-01-01

    Unaltered pyroclastic deposits have previously been deemed to have "low" potential for the formation, concentration and preservation of organic material on the Martian surface. Yet volcanic glasses that have solidified very quickly after an eruption may be good candidates for containment and preservation of refractory organic material that existed in a biologic system pre-eruption due to their impermeability and ability to attenuate UV radiation. Analysis using NanoSIMS of volcanic glass could then be performed to both deduce carbon isotope ratios that indicate biologic origin and confirm entrainment during eruption. Terrestrial contamination is one of the biggest barriers to definitive Martian organic identification in soil and rock samples. While there is a greater potential to concentrate organics in sedimentary strata, volcanic glasses may better encapsulate and preserve organics over long time scales, and are widespread on Mars. If volcanic glass from many sites on Earth could be shown to contain biologically derived organics from the original environment, there could be significant implications for the search for biomarkers in ancient Martian environments.

  9. Mutual entrainment of bilaterally distributed circadian pacemaker.

    PubMed Central

    Page, T L; Caldarola, P C; Pittendrigh, C S

    1977-01-01

    The interactions between the bilaterally distributed components of the circadin system that controls the locomotor activity rhythm of the cockroach Leucophaea maderae were investigated in a series of surgical lesion experiments. Complete excision of one optic lobe (either right or left) or its surgical isolation from the central nervous system had no effect on the animals' ability to free-run in constant darkness nor was there any indication, as judged by postoperative pi values of any difference between left and right lobe pacemakers. However, these surgical procedures consistently resulted in a significant increase in tau over preoperative value while optic nerve section had no effect on tau. The propostion is developed that the left and right pacemakers in the two optic lobes are mutally coupled and that the compound pacemaker's period is shorter than either of its constituent pacemakers. It was also found that the integrity of either compound eye is sufficient to assure entrainment of both left and right pacemakers. Images PMID:265571

  10. A comparative efficacy study of photic driving brainwave entrainment technology with a novel form of more direct entrainment

    NASA Astrophysics Data System (ADS)

    Knowles, Richard Thomas

    This exploratory study compared the efficacy of a novel brainwave electromagnetic (EM) entrainment technology against a more conventional technology utilizing the photic-driving technique. Both experimental conditions were also compared with a 7-minute control session that took place immediately before each stimulation session. The Schumann Resonance (SR) frequency was selected as the delivery signal and was chosen because of previous findings suggesting that entrainment to this frequency can often produce transpersonal if not paranormal, experiences in the entrainee, which sometimes resemble remote viewing or out-of-body experiences. A pilot study determined which of two novel entrainment modalities (a copper coil or a 16-solenoid headset) worked most effectively for use with the rest of the study. In the main study, an artificial SR signal at 7.8Hz was delivered during the photic-driving sessions, but a recording of the real-time SR was used to deliver the entrainment signal during sessions devoted to the electromagnetic entrainment modality. Sixteen participants were recruited from the local area, and EEG recordings were acquired via a 32-channel Deymed electroencephalography system. Comparative analyses were performed between the control and experimental portions of each session to assess for efficacy of the novel entrainment modality used, and, in the main study, between the electromagnetic and photic-driving sessions, to assess for differential entrainment efficacy between these groups. A follow-up study was additionally performed primarily to determine whether responders could replicate their entrainment effect from the main study. Results showed that EM entrainment appeared to be possible but is not nearly as robust or reliable as photic driving. Additionally, no profound transpersonal or paranormal experiences were elicited during the course of the study, and, when asked, participants were not able to determine with any degree of success, when the

  11. Depth of penetration of bubbles entrained by a plunging water jet

    NASA Astrophysics Data System (ADS)

    Clanet, Christophe; Lasheras, Juan C.

    1997-07-01

    A model is proposed to predict the depth of penetration of the air bubbles entrained by a round water jet impacting into a flat, liquid pool. This depth is shown to be determined only by the initial jet momentum and by the non-monotonic nature of the bubble terminal velocities as a function of their size. The model is shown to be in excellent agreement with measurements of the depth and width of penetration of the bubbles performed over a wide range of jet diameters, velocities, and plunging angles.

  12. How coupling determines the entrainment of circadian clocks

    NASA Astrophysics Data System (ADS)

    Bordyugov, G.; Granada, A. E.; Herzel, H.

    2011-08-01

    Autonomous circadian clocks drive daily rhythms in physiology and behaviour. A network of coupled neurons, the suprachiasmatic nucleus (SCN), serves as a robust self-sustained circadian pacemaker. Synchronization of this timer to the environmental light-dark cycle is crucial for an organism's fitness. In a recent theoretical and experimental study it was shown that coupling governs the entrainment range of circadian clocks. We apply the theory of coupled oscillators to analyse how diffusive and mean-field coupling affects the entrainment range of interacting cells. Mean-field coupling leads to amplitude expansion of weak oscillators and, as a result, reduces the entrainment range. We also show that coupling determines the rigidity of the synchronized SCN network, i.e. the relaxation rates upon perturbation. Our simulations and analytical calculations using generic oscillator models help to elucidate how coupling determines the entrainment of the SCN. Our theoretical framework helps to interpret experimental data.

  13. Entrainment of a Synthetic Oscillator through Queueing Coupling

    NASA Astrophysics Data System (ADS)

    Hochendoner, Philip; Mather, William; Butzin, Nicholas; Ogle, Curtis

    2014-03-01

    Many biological systems naturally exhibit (often noisy) oscillatory patterns that are capable of being entrained by external stimuli, though the mechanism of entrainment is typically obscured by the complexity of native networks. A synthetic biology approach, where genetic programs are wired ``by hand,'' has proven useful in this regard. In the present study, we use a synthetic oscillator in Escherichia coli to demonstrate a novel and potentially widespread mechanism for biological entrainment: competition of proteins for degradation by common pathway, i.e. a entrainment by a bottleneck. To faithfully represent the discrete and stochastic nature of this bottleneck, we leverage results from a recent biological queueing theory, where in particular, the queueing theoretic concept of workload is discovered to simplify the analysis. NSF Award 1330180.

  14. Used cooking oil as a green chemical admixture in concrete

    NASA Astrophysics Data System (ADS)

    Salmia, B.; Che Muda, Zakaria; Ashraful Alam, Md; Sidek, L. M.; Hidayah, B.

    2013-06-01

    According to National Statistics Approximately 1.35 billion gallons of used oil are generated yearly. With the increasing of the concrete usage, a more cost effective and economic new type of admixtures may give positive impacts on the Malaysian construction building as well as worldwide concrete usage. To objective of this is study is to investigate the effect of used cooking oil in terms of slump test, compressive strength test and rebound hammer. By adding the used cooking oil to the concrete, it increases the slump value from 4% to 72%. And the compressive strength have an increment from 1% to 16.8%. The used cooking oil obtains the optimum contribution to the concrete mix proportion of containing used cooking oil of 1.50% from the cement content. The result of used cooking oil from experimental program of slump value and compressive strength proved that used cooking oil have positive effects on replacement of commercially available superplasticizer.

  15. Impact of admixtures on the hydration kinetics of Portland cement

    SciTech Connect

    Cheung, J.; Jeknavorian, A.; Roberts, L.; Silva, D.

    2011-12-15

    Most concrete produced today includes either chemical additions to the cement, chemical admixtures in the concrete, or both. These chemicals alter a number of properties of cementitious systems, including hydration behavior, and it has been long understood by practitioners that these systems can differ widely in response to such chemicals. In this paper the impact on hydration of several classes of chemicals is reviewed with an emphasis on the current understanding of interactions with cement chemistry. These include setting retarders, accelerators, and water reducing dispersants. The ability of the chemicals to alter the aluminate-sulfate balance of cementitious systems is discussed with a focus on the impact on silicate hydration. As a key example of this complex interaction, unusual behavior sometimes observed in systems containing high calcium fly ash is highlighted.

  16. Migration, genetic markers and race admixture in Curitiba, Brazil.

    PubMed

    Culpi, L; Salzano, F M

    1984-01-01

    1000 Blacks and 1001 Whites from the southern Brazilian city Curitiba were studied in relation to migration patterns, ABO and Rh blood groups, and hemoglobin types. Despite a lower socioeconomic level, Blacks migrated more than Whites. Carriers of abnormal hemoglobin types show about the same degree of mobility as those with normal hemoglobin only. As much as 1/2 of the genes present among the Blacks of this city may be of European origin, while persons classified as White may have from 3 to 19% of African ancestry. The results are in agreement with the history of the community and indicate that the process of race admixture is occurring at a high rate despite the relatively low frequency of individuals showing clear signs of African ancestry (as compared the bulk of the Brazilian populations) in Curitiba.

  17. Synthesis of Entrainment and Detrainment formulations for Convection Parameterizations

    NASA Astrophysics Data System (ADS)

    Siebesma, P.

    2015-12-01

    Mixing between convective clouds and its environment, usually parameterized in terms of entrainment and detrainment, are among the most important processes that determine the strength of the climate model sensitivity. This notion has led to a renaissance of research in exploring the mechanisms of these mixing processes and, as a result, to a wide range of seemingly different parameterized formulations. In this study we are aiming to synthesize these results as to offer a solid framework for use in parameterized formulations of convection. Detailed LES analyses in which clouds are subsampled according to their size show that entrainment rates are inversely proportional to the typical cloud radius, in accordance with original entraining plume models. These results can be shown analytically to be consistent with entrainment rate formulations of cloud ensembles that decrease inversely proportional with height, by making only mild assumptions on the shape of the associated cloud size distribution. In addition there are additional dependencies of the entrainment rates on the environmental thermodynamics such as the relative humidity and stability but these are of second order. In contrast detrainment rates do depend to first order on the environmental thermodynamics such as relative humidity and stability. This can be understood by realizing that i) the details of the cloud size distribution do depend on these environmental factors and ii) that detrainment rates have a much stronger dependency on the shape of the cloud size distribution than entrainment rates.

  18. Entrainment and detrainment in a simple cumulus cloud model

    NASA Technical Reports Server (NTRS)

    Randall, D. A.; Huffman, G. J.

    1982-01-01

    A cumulus cloud model, analogous to the mixed-layer models of the planetary boundary layer and the upper ocean, is developed using a single, unitary entrainment process in which the motion of the cloud boundary relative to the mean flow is permitted, produced, and controlled by turbulent processes. An alternate theory to the mixing-length theory of Asai and Kasahara (1967) is proposed which completely removes the strong scale-dependence of the Asai-Kasahara model. The model reintroduces scale-dependence by introducing including the pe5turbation pressure term of the equation of vertical motion. It is shown that the model predicts deeper clouds than the Asai-Kasahara model for a given sounding, due to the entrainment assumption and the effects of the perturbation pressure. Lateral entrainment dominates cloud-top entrainment, although finite-difference errors increase the cloud-top entrainment rate from zero to a positive value in actual situations. The fractional entrainment rate for updrafts is determined to vary only slightly with height and to decrease only slowly as the cloud radius increases, while the fractional detrainment rate for updrafts increases with height.

  19. Entrainment of the master circadian clock by scheduled feeding.

    PubMed

    Castillo, Marina R; Hochstetler, Kelly J; Tavernier, Ronald J; Greene, Dana M; Bult-Ito, Abel

    2004-09-01

    The master circadian clock, located in the mammalian suprachiasmatic nuclei (SCN), generates and coordinates circadian rhythmicity, i.e., internal organization of physiological and behavioral rhythms that cycle with a near 24-h period. Light is the most powerful synchronizer of the SCN. Although other nonphotic cues also have the potential to influence the circadian clock, their effects can be masked by photic cues. The purpose of this study was to investigate the ability of scheduled feeding to entrain the SCN in the absence of photic cues in four lines of house mouse (Mus domesticus). Mice were initially housed in 12:12-h light/dark cycle with ad libitum access to food for 6 h during the light period followed by 4-6 mo of constant dark under the same feeding schedule. Wheel running behavior suggested and circadian PER2 protein expression profiles in the SCN confirmed entrainment of the master circadian clock to the onset of food availability in 100% (49/49) of the line 2 mice in contrast to only 4% (1/24) in line 3 mice. Mice from line 1 and line 4 showed intermediate levels of entrainment, 57% (8/14) and 39% (7/18), respectively. The predictability of entrainment vs. nonentrainment in line 2 and line 3 and the novel entrainment process provide a powerful tool with which to further elucidate mechanisms involved in entrainment of the SCN by scheduled feeding.

  20. Turbulent Entrainment into Non-Newtonian Fluid Mud Gravity Currents

    NASA Astrophysics Data System (ADS)

    Jacobson, Michael; Testik, Firat

    2011-11-01

    This study presents insights into turbulent entrainment of ambient water into fluid mud gravity currents. It is well established that fluid mud suspensions exhibit pseudo-plastic behavior. Gravity current laboratory experiments were conducted for constant-volume release configuration with different initial concentrations of fluid mud, representing different rheological properties (i.e. different Power-law model constants). A high quality data set of concentration and velocity profiles of fluid mud gravity currents was collected to calculate the entrainment velocity, we. The entrainment ratio (E =we / U , U - characteristic velocity) was calculated following the well-accepted Morton-Taylor-Turner entrainment hypothesis, which states that the inflow across the edge of a turbulent flow is proportional to some characteristic velocity. The entrainment ratio was further measured qualitatively using a light opaqueness technique. A semi-empirical parameterization for the entrainment ratio is proposed. The findings of this study are expected to be of significance for modeling various non-Newtonian gravity currents, in particular for modeling fluid mud gravity currents generated during dredge disposal operations in coastal waters. Contact Author.

  1. Impaired auditory-to-motor entrainment in Parkinson's disease.

    PubMed

    Te Woerd, Erik S; Oostenveld, Robert; De Lange, Floris Pieter; Praamstra, Peter

    2017-02-08

    Several electrophysiological studies suggest that PD patients have a reduced tendency to entrain to regular environmental patterns. Here we investigate whether this reduced entrainment concerns a generalized deficit or is confined to movement-related activity, leaving sensory entrainment intact. Magnetoencephalography (MEG) was recorded during a rhythmic auditory target detection task in 14 PD patients and 14 control subjects. Participants were instructed to press a button when hearing a target tone amidst an isochronous sequence of standard tones. The variable pitch of standard tones indicated the probability of the next tone to be a target. In addition, targets were occasionally omitted to evaluate entrainment uncontaminated by stimulus effects. Response times were not significantly different between groups and both groups benefited equally from the predictive value of standard tones. Analyses of oscillatory beta power over auditory cortices showed equal entrainment to the tones in both groups. By contrast, oscillatory beta power and event-related fields (ERFs) demonstrated a reduced engagement of motor cortical areas in PD patients, expressed in the modulation depth of beta power, in the response to omitted stimuli, and in an absent motor area P300 effect. Together, these results show equally strong entrainment of neural activity over sensory areas in controls and patients, but, in patients, a deficient translation of the adjustment to the task rhythm to motor circuits. We suggest that the reduced activation does not merely reflect altered resonance to rhythmic external events, but a compromised recruitment of an endogenous response reflecting internal rhythm generation.

  2. Testing Central and Inner Asian admixture among contemporary Hungarians.

    PubMed

    Bíró, András; Fehér, Tibor; Bárány, Gusztáv; Pamjav, Horolma

    2015-03-01

    Historically, the Carpathian Basin was the final destination for many nomadic peoples who migrated westward from Inner and Central Asia towards Europe. Proto-Hungarians (Steppe Magyars) were among those who came from the East, the Eurasian Steppe in the early middle ages. In order to detect the paternal genetic contribution from nomadic Steppe tribes, we tested 966 samples from Central Asian (Uzbekistan, Kazakhstan), Inner Asian (Mongolians and Buryats in Mongolia) and Hungarian-speaking European (Hungarian, Sekler and Csango) populations. We constructed median-joining networks of certain haplogroups in Hungarian-speaking European, and Altaic-speaking Central and Inner Asian populations. We estimated that the possible paternal genetic contribution from the above described populations among contemporary Hungarian speaking populations ranged between 5% and 7.4%. It is lowest among Hungarians from Hungary (5.1%), while higher among Hungarian-speaking groups in Romania, notably Sekler (7.4%) and Csango (6.3%). However, these results represent only an upper limit. Actual Central/Inner Asian admixture might be somewhat lower as some of the related lineages may have come from a common third source. The main haplogroups responsible for the Central/Inner Asian admixture among Hungarians are J2*-M172 (xM47, M67, M12), J2-L24, R1a-Z93; Q-M242 and E-M78. Earlier studies showed very limited Uralic genetic influence among Hungarians, and based on the present study, Altaic/Turkic genetic contribution is also not significant, although significantly higher than the Uralic one. The conclusion of this study is that present-day Hungarian speakers are genetically very similar to neighbouring populations, isolated Hungarian speaking groups having relatively higher presence of Central and Inner Asian genetic elements. At the same time, the reliable historical and genetic conclusions require an extension of the study to a significantly larger database with deep haplogroup resolution

  3. The Complex Admixture History and Recent Southern Origins of Siberian Populations

    PubMed Central

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-01-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere. PMID:26993256

  4. The Complex Admixture History and Recent Southern Origins of Siberian Populations.

    PubMed

    Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

    2016-07-01

    Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere.

  5. The relationship between European genetic admixture and body composition among Hispanics and Native Americans.

    PubMed

    Klimentidis, Y C; Miller, G F; Shriver, M D

    2009-01-01

    Previous studies have shown a relationship between health-related phenotypes and the degree of African, European, or Native American genetic admixture, indicating that there may be a genetic component to these phenotypes. However, these relationships may be driven to a large extent by the environmental differences that co-vary with admixture differences between and within groups. In this study, we examine the relationship between genetic admixture and two phenotypic measurements that are potentially related to health: body mass index (BMI) and percent body fat (PBF). In addition to admixture proportions, we attempt to assess the influence of some environmental covariates by examining how the phenotypes vary with self-reported household income, education of parents, and physical activity level. Genetic, anthropometric, and environmental data were collected from 170 self-reported Hispanic and Native American university students in Albuquerque, NM. We examine the relationships between genetic admixture, phenotype, and environment in both the full sample, as well as in Hispanics and Native Americans separately. Among Hispanics, we find no significant relationship between genetic admixture and body composition. Among Native Americans, despite a small sample size, we find a statistically significant, negative relationship between European genetic admixture and PBF and BMI, after adjusting for other predictor variables. We compare our findings to previous research, and discuss their implications for understanding health disparities within and between ethnic groups.

  6. Wood entrainment factors analysis using a fixed flume experiment

    NASA Astrophysics Data System (ADS)

    Chen, Su-Chin; Chao, Yi-Chiung; Wang, Ci-Rong

    2013-04-01

    The dynamical mechanism of wood debris entrainment is a complex behavior in the natural river. We, thus, used a fixed flume experiment and simplified some complex impacts to simulate the individual wood entrainment. Using different woody characteristics, such as different lengths (15~30 cm), diameters (3~5 cm) and densities (428 ~1142 kg/m3) of wood, and the flow angles between the wood and the central flow, such as parallel, oblique, and transverse, and bed roughness (5 and 8 mm) to explore the influences for the flow surrounding the wood. The results indicated that wood diameters and densities are the key factors to keep the wood debris stable; special, the wood density had the effect significantly. In addition, the other factor affected wood to keep stability in the channel was the flow angle between the wood. Wood entrainment has a interaction with buoyant force significantly and drag force unobtrusively as the wood paralleling the flow. Following the depth increases gradually, the buoyant force development and the friction force decrease until the wood start to entrain by semi-floating and semi-sliding. The drag force drove wood to entrain as the wood was oblique or transverse to the flow. The drag force and channel bed roughness had a positive relationship in this case. While the wood accessed greater channel bed roughness, the wood entrainment needed more drag force to rolling to the downstream. Summarized the results, we used regression analysis to show significant models of the wood entrainment. The model established Y* (the relative buoyancy), X* (the normalized ratio of the drag force and resistance to movement of the log), and used wood densities to distinguish four different wood entrainment thresholds (300~600 kg/m3, 600~800 kg/m3, 800~1000 kg/m3, and >1000 kg/m3). With the wood densities increasing, the wood entrainment thresholds are reducing slightly. Finally, we hope that these results could provide accessible principles to predict the wood

  7. Turning Off Entrainment: The Role of Particle Size Distributions and Vent GeometryIn The Collapse of Volcanic Jets

    NASA Astrophysics Data System (ADS)

    Jessop, D.; Jellinek, M.; Roche, O.

    2014-12-01

    Volcanic jets can undergo gravitational collapse to produce pyroclastic density currents (PDCs), or loft material several tens of kilometres and spread out as an ash cloud. The key ingredient that determines which of these two phenomena will occur is the turbulent entrainment of atmospheric air, which adds buoyancy to the jet. Classical models of eruption columns assume that the rate of entrainment is fixed and ~10% of the upflow rate of the jet. In particular, the efficiency of entrainment is assumed to be independent of the vent shape as well as the physical properties of the pyroclastic mixture. However, we show that the presence of particles of certain particle-size distributions (PSDs) in the jet can have a significant effect on the entrainment rate owing to their buoyancy and inertia. As a consequence, the conditions for collapse as previously identified must be revisited. In particular, there is a possibility for an eruption to produce both a buoyant column and a collapsing fountain. Using scaled analogue experiments, we test the likelyhood of collapse and the production of pyroclastic flows according to the source geometry and particle-size distributions.

  8. Final Report - "Foaming and Antifoaming and Gas Entrainment in Radioactive Waste Pretreatment and Immobilization Processes"

    SciTech Connect

    Wasan, Darsh T.

    2007-10-09

    The Savannah River Site (SRS) and Hanford site are in the process of stabilizing millions of gallons of radioactive waste slurries remaining from production of nuclear materials for the Department of Energy (DOE). The Defense Waste Processing Facility (DWPF) at SRS is currently vitrifying the waste in borosilicate glass, while the facilities at the Hanford site are in the construction phase. Both processes utilize slurry-fed joule-heated melters to vitrify the waste slurries. The DWPF has experienced difficulty during operations. The cause of the operational problems has been attributed to foaming, gas entrainment and the rheological properties of the process slurries. The rheological properties of the waste slurries limit the total solids content that can be processed by the remote equipment during the pretreatment and meter feed processes. Highly viscous material can lead to air entrainment during agitation and difficulties with pump operations. Excessive foaming in waste evaporators can cause carryover of radionuclides and non-radioactive waste to the condensate system. Experimental and theoretical investigations of the surface phenomena, suspension rheology and bubble generation of interactions that lead to foaming and air entrainment problems in the DOE High Level and Low Activity Radioactive Waste separation and immobilization processes were pursued under this project. The first major task accomplished in the grant proposal involved development of a theoretical model of the phenomenon of foaming in a three-phase gas-liquid-solid slurry system. This work was presented in a recently completed Ph.D. thesis (9). The second major task involved the investigation of the inter-particle interaction and microstructure formation in a model slurry by the batch sedimentation method. Both experiments and modeling studies were carried out. The results were presented in a recently completed Ph.D. thesis. The third task involved the use of laser confocal microscopy to study

  9. Relationship between diabetes risk and admixture in postmenopausal African-American and Hispanic-American women

    PubMed Central

    Qi, L.; Nassir, R.; Kosoy, R.; Garcia, L.; Curb, J. D.; Tinker, L.; Howard, B. V.; Robbins, J.; Seldin, M. F.

    2015-01-01

    Aims/hypothesis Type 2 diabetes is more prevalent in African-Americans (AFAs) and Hispanic-Americans (HAs) than in European-Americans. We assessed whether continental admixture was correlated with diabetes risk in these high-risk groups. Methods We estimated the proportion of sub-Saharan African (AFR), Amerindian (AMI) and European admixture using 92 ancestry-informative marker genotypes in 16,476 AFA and HA women from the Women's Health Initiative. Cox regression models were used to examine the association between admixture and diabetes risk, with and without accounting for socioeconomic status (SES) and adiposity measurements. Results AFR admixture was significantly associated with diabetes risk in AFA women when adjusting for entry age, neighbourhood SES and BMI or waist/hip ratio (WHR) (all p<0.0001). In HA women, AMI admixture had significant associations with diabetes risk that remained significant after adjustment for SES and BMI (all p<0.0005). In both AFAs and HAs, SES showed significant negative associations while BMI or WHR had significant positive associations with diabetes risk, with and without adjustment for genetic admixture. Conclusions/interpretation In AFAs, admixture, SES and BMI/WHR each independently contribute to diabetes risk after accounting for each of the other factors; in HAs, admixture, SES and BMI each independently contribute to diabetes risk after accounting for each of the other factors, whereas admixture is not significantly associated with diabetes risk after accounting for SES and WHR. The findings emphasise the importance of considering both genetic and environmental causes in the aetiology of type 2 diabetes. PMID:22322919

  10. Population admixture, biological invasions and the balance between local adaptation and inbreeding depression.

    PubMed

    Verhoeven, Koen J F; Macel, Mirka; Wolfe, Lorne M; Biere, Arjen

    2011-01-07

    When previously isolated populations meet and mix, the resulting admixed population can benefit from several genetic advantages, including increased genetic variation, the creation of novel genotypes and the masking of deleterious mutations. These admixture benefits are thought to play an important role in biological invasions. In contrast, populations in their native range often remain differentiated and frequently suffer from inbreeding depression owing to isolation. While the advantages of admixture are evident for introduced populations that experienced recent bottlenecks or that face novel selection pressures, it is less obvious why native range populations do not similarly benefit from admixture. Here we argue that a temporary loss of local adaptation in recent invaders fundamentally alters the fitness consequences of admixture. In native populations, selection against dilution of the locally adapted gene pool inhibits unconstrained admixture and reinforces population isolation, with some level of inbreeding depression as an expected consequence. We show that admixture is selected against despite significant inbreeding depression because the benefits of local adaptation are greater than the cost of inbreeding. In contrast, introduced populations that have not yet established a pattern of local adaptation can freely reap the benefits of admixture. There can be strong selection for admixture because it instantly lifts the inbreeding depression that had built up in isolated parental populations. Recent work in Silene suggests that reduced inbreeding depression associated with post-introduction admixture may contribute to enhanced fitness of invasive populations. We hypothesize that in locally adapted populations, the benefits of local adaptation are balanced against an inbreeding cost that could develop in part owing to the isolating effect of local adaptation itself. The inbreeding cost can be revealed in admixing populations during recent invasions.

  11. Improving ENSO periodicity simulation by adjusting cumulus entrainment in BCC_CSMs

    NASA Astrophysics Data System (ADS)

    Lu, Bo; Ren, Hong-Li

    2016-12-01

    The simulation of El Niño-Southern Oscillation (ENSO) phenomenon is a challenging issue for coupled climate models. This study focuses on the ENSO periodicity simulated by Beijing Climate Center Climate System Models (BCC_CSM1.1 and BCC_CSM1.1m) which can reproduce reasonably well ENSO amplitude as observations. However, the major period of ENSO simulated by the BCC_CSMs is around 2.4 years, which is much shorter than that in observations. Compared with other 24 coupled models in Coupled Model Intercomparison Project Phase 5 (CMIP5), BCC_CSMs produce a very unrealistic ENSO peak period. Such a bias in simulating periodicity is suggested as a consequence of the severely underestimated air-sea coupling intensity in BCC_CSMs. To test this hypothesis, a quantitative method is developed to diagnose the linear ENSO frequency. As an effort to improve the ENSO simulation in BCC_CSMs, three experiments are performed with varying entrainment rates in the cumulus convection parameterization scheme of BCC_CSM1.1m. A more realistic ENSO period of about 3.3 years can be generated by the model with an inflated entrainment rate. When the cumulus entrainment is increased by 10%, the ENSO-related convective precipitation will enhance in the equatorial central to eastern Pacific. This anomalous convective heating induces an intensified surface westerly wind stress to the west of the anomalous convection center and as a result, the air-sea coupling intensity becomes larger, which contributes to a longer period of ENSO based on previous theories. In addition, the pronounced eastward extension of ENSO-related surface wind stress could also be the secondary factor to generate a lower frequency of ENSO in BCC_CSMs. Our study proposes a method to reduce the biases in ENSO periodicity simulation and puts more insights into the importance of adjusting atmospheric convection to reproduce ENSO properties in coupled model.

  12. Hydration Characteristics of Metakaolin Admixtured Cement using DTA, XRD and SEM Techniques

    NASA Astrophysics Data System (ADS)

    Govindarajan, D.; Gopalakrishnan, R.

    2008-04-01

    The paper aims to investigate hydration and pozzolanic reaction in Portland cement paste with different replacement percentages (0%, 10%, 20% and 30%) of metakaolin. The compressive strength of the metakaolin admixtured cement was measured at 1 day, 1 week and 4 weeks. The compressive strength developments of the metakaolin admixtured cement are compared with Portland cement. It is found that metakaolin contributes significantly to strength development as an accelerating admixture for Portland cement. The pozzolanic reactions and the reaction products were determined by DTA, XRD and SEM.

  13. Detecting Ancient Admixture and Estimating Demographic Parameters in Multiple Human Populations

    PubMed Central

    Lohmueller, Kirk E.; Plagnol, Vincent

    2009-01-01

    We analyze patterns of genetic variation in extant human polymorphism data from the National Institute of Environmental Health Sciences single nucleotide polymorphism project to estimate human demographic parameters. We update our previous work by considering a larger data set (more genes and more populations) and by explicitly estimating the amount of putative admixture between modern humans and archaic human groups (e.g., Neandertals, Homo erectus, and Homo floresiensis). We find evidence for this ancient admixture in European, East Asian, and West African samples, suggesting that admixture between diverged hominin groups may be a general feature of recent human evolution. PMID:19420049

  14. Influence of cross-flow on the entrainment of bending plumes

    NASA Astrophysics Data System (ADS)

    Freedland, Graham; Mastin, Larry; Steven, Solovitz; Cal, Raul

    2016-11-01

    Volcanic eruption columns inject high concentrations of ash into the atmosphere. Some of this ash is carried downwind forming ash clouds in the atmosphere that are hazardous for private and commercial aviation. Current models rely on inputs such as plume height, duration, eruption rate, and meteorological wind fields. Eruption rate is estimated from plume height using relations that depend on the rate of air entrainment into the plume, which is not well quantified. A wind tunnel experiment has been designed to investigate these models by injecting a vertical air jet into a cross-flow. The ratio of the cross-flow and jet velocities is varied to simulate a weak plume, and flow response is measured using particle image velocimetry. The plumes are characterized and profile data is examined to measure the growth of weak plumes and the entrainment velocity along its trajectory. This allows for the study of the flow field, mean, and second order moments, and obtain information to improve models of volcanic ash concentrations in the atmosphere.

  15. Extraordinary behavioral entrainment following circadian rhythm bifurcation in mice

    PubMed Central

    Harrison, Elizabeth M.; Walbeek, Thijs J.; Sun, Jonathan; Johnson, Jeremy; Poonawala, Qays; Gorman, Michael R.

    2016-01-01

    The mammalian circadian timing system uses light to synchronize endogenously generated rhythms with the environmental day. Entrainment to schedules that deviate significantly from 24 h (T24) has been viewed as unlikely because the circadian pacemaker appears capable only of small, incremental responses to brief light exposures. Challenging this view, we demonstrate that simple manipulations of light alone induce extreme plasticity in the circadian system of mice. Firstly, exposure to dim nocturnal illumination (<0.1 lux), rather than completely dark nights, permits expression of an altered circadian waveform wherein mice in light/dark/light/dark (LDLD) cycles “bifurcate” their rhythms into two rest and activity intervals per 24 h. Secondly, this bifurcated state enables mice to adopt stable activity rhythms under 15 or 30 h days (LDLD T15/T30), well beyond conventional limits of entrainment. Continuation of dim light is unnecessary for T15/30 behavioral entrainment following bifurcation. Finally, neither dim light alone nor a shortened night is sufficient for the extraordinary entrainment observed under bifurcation. Thus, we demonstrate in a non-pharmacological, non-genetic manipulation that the circadian system is far more flexible than previously thought. These findings challenge the current conception of entrainment and its underlying principles, and reveal new potential targets for circadian interventions. PMID:27929128

  16. Simulating entrainment and particle fluxes in stratified estuaries

    SciTech Connect

    Jensen, A.; Jirka, G.; Lion, L.W.; Brunk, B.

    1999-04-01

    Settling and entrainment are the dominant processes governing noncohesive particle concentration throughout the water column of salt-wedge estuaries. Determination of the relative contribution of these transport processes is complicated by vertical gradients in turbulence and fluid density. A differential-turbulence column (DTC) was designed to simulate a vertical section of a natural water column. With satisfactory characterization of turbulence dissipation and saltwater entrainment, the DTC facilitates controlled studies of suspended particles under estuarine conditions. The vertical decay of turbulence in the DTC was found to obey standard scaling law relations when the characteristic length scale for turbulence in the apparatus was incorporated. The entrainment rate of a density interface also followed established grid-stirred turbulence scaling laws. These relations were used to model the change in concentration of noncohesive particles above a density interface. Model simulations and experimental data from the DTC were consistent over the range of conditions encountered in natural salt-wedge estuaries. Results suggest that when the ratio of entrainment rate to particle settling velocity is small, sedimentation is the dominant transport process, while entrainment becomes significant as the ratio increases.

  17. Entrainment of Spontaneously Hypertensive Rat Fibroblasts by Temperature Cycles

    PubMed Central

    Sládek, Martin; Sumová, Alena

    2013-01-01

    The functional state of the circadian system of spontaneously hypertensive rats (SHR) differs in several characteristics from the functional state of normotensive Wistar rats. Some of these changes might be due to the compromised ability of the central pacemaker to entrain the peripheral clocks. Daily body temperature cycles represent one of the important cues responsible for the integrity of the circadian system, because these cycles are driven by the central pacemaker and are able to entrain the peripheral clocks. This study tested the hypothesis that the aberrant peripheral clock entrainment of SHR results from a compromised peripheral clock sensitivity to the daily temperature cycle resetting. Using cultured Wistar rat and SHR fibroblasts transfected with the circadian luminescence reporter Bmal1-dLuc, we demonstrated that two consecutive square-wave temperature cycles with amplitudes of 2.5°C are necessary and sufficient to restart the dampened oscillations and entrain the circadian clocks in both Wistar rat and SHR fibroblasts. We also generated a phase response curve to temperature cycles for fibroblasts of both rat strains. Although some of the data suggested a slight resistance of SHR fibroblasts to temperature entrainment, we concluded that the overall effect it too weak to be responsible for the differences between the SHR and Wistar in vivo circadian phenotype. PMID:24116198

  18. Entrainment of a Bacterial Synthetic Gene Oscillator through Proteolytic Queueing.

    PubMed

    Butzin, Nicholas C; Hochendoner, Philip; Ogle, Curtis T; Mather, William H

    2017-03-17

    Internal chemical oscillators (chemical clocks) direct the behavior of numerous biological systems, and maintenance of a given period and phase among many such oscillators may be important for their proper function. However, both environmental variability and fundamental molecular noise can cause biochemical oscillators to lose coherence. One solution to maintaining coherence is entrainment, where an external signal provides a cue that resets the phase of the oscillators. In this work, we study the entrainment of gene networks by a queueing interaction established by competition between proteins for a common proteolytic pathway. Principles of queueing entrainment are investigated for an established synthetic oscillator in Escherichia coli. We first explore this theoretically using a standard chemical reaction network model and a map-based model, both of which suggest that queueing entrainment can be achieved through pulsatile production of an additional protein competing for a common degradation pathway with the oscillator proteins. We then use a combination of microfluidics and fluorescence microscopy to verify that pulse trains modulating the production rate of a fluorescent protein targeted to the same protease (ClpXP) as the synthetic oscillator can entrain the oscillator.

  19. Extraordinary behavioral entrainment following circadian rhythm bifurcation in mice.

    PubMed

    Harrison, Elizabeth M; Walbeek, Thijs J; Sun, Jonathan; Johnson, Jeremy; Poonawala, Qays; Gorman, Michael R

    2016-12-08

    The mammalian circadian timing system uses light to synchronize endogenously generated rhythms with the environmental day. Entrainment to schedules that deviate significantly from 24 h (T24) has been viewed as unlikely because the circadian pacemaker appears capable only of small, incremental responses to brief light exposures. Challenging this view, we demonstrate that simple manipulations of light alone induce extreme plasticity in the circadian system of mice. Firstly, exposure to dim nocturnal illumination (<0.1 lux), rather than completely dark nights, permits expression of an altered circadian waveform wherein mice in light/dark/light/dark (LDLD) cycles "bifurcate" their rhythms into two rest and activity intervals per 24 h. Secondly, this bifurcated state enables mice to adopt stable activity rhythms under 15 or 30 h days (LDLD T15/T30), well beyond conventional limits of entrainment. Continuation of dim light is unnecessary for T15/30 behavioral entrainment following bifurcation. Finally, neither dim light alone nor a shortened night is sufficient for the extraordinary entrainment observed under bifurcation. Thus, we demonstrate in a non-pharmacological, non-genetic manipulation that the circadian system is far more flexible than previously thought. These findings challenge the current conception of entrainment and its underlying principles, and reveal new potential targets for circadian interventions.

  20. Admixture enhanced controlled low-strength material for direct underwater injection with minimal cross-contamination

    SciTech Connect

    Hepworth, H.K.; Davidson, J.S.; Hooyman, J.L.

    1997-03-01

    Commercially available admixtures have been developed for placing traditional concrete products under water. This paper evaluates adapting anti-washout admixture (AWA) and high range water reducing admixture (HRWRA) products to enhance controlled low-strength materials (CLSMs) for underwater placement. A simple experimental scale model (based on dynamic and geometric similitude) of typical grout pump emplacement equipment has been developed to determine the percentage of cementing material washed out. The objective of this study was to identify proportions of admixtures and underwater CLSM emplacement procedures which would minimize the cross-contamination of the displaced water while maintaining the advantages of CLSM. Since the displaced water from radioactively contaminated systems must be subsequently treated prior to release to the environment, the amount of cross-contamination is important for cases in which cementing material could form hard sludges in a water treatment facility and contaminate the in-place CLSM stabilization medium.

  1. Influence of nonisothermicity of the medium and polymer admixtures on a turbulent vertical wall jet

    NASA Astrophysics Data System (ADS)

    Pokryvailo, N. A.; Shashmin, V. K.; Shul'Man, Z. P.

    1990-04-01

    The results are given on an experimental investigation of the effect of small polymer admixtures and density inhomogeneity of the ambient medium on the laws of development of plane, vertical, turbulent wall jets.

  2. A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population

    PubMed Central

    Tashi, Tsewang; Lorenzo, Felipe Ramos; Feusier, Julie Ellen; Mir, Hyder

    2016-01-01

    The Kashmiri population is an ethno-linguistic group that resides in the Kashmir Valley in northern India. A longstanding hypothesis is that this population derives ancestry from Jewish and/or Greek sources. There is historical and archaeological evidence of ancient Greek presence in India and Kashmir. Further, some historical accounts suggest ancient Hebrew ancestry as well. To date, it has not been determined whether signatures of Greek or Jewish admixture can be detected in the Kashmiri population. Using genome-wide genotyping and admixture detection methods, we determined there are no significant or substantial signs of Greek or Jewish admixture in modern-day Kashmiris. The ancestry of Kashmiri Tibetans was also determined, which showed signs of admixture with populations from northern India and west Eurasia. These results contribute to our understanding of the existing population structure in northern India and its surrounding geographical areas. PMID:27490348

  3. Development of a large-entrainment-ratio axisymmetric supersonic ejector for micro butane combustor

    NASA Astrophysics Data System (ADS)

    Fan, Yong; Suzuki, Yuji; Kasagi, Nobuhide

    2006-09-01

    A large-entrainment-ratio micro ejector has been developed to supply fuel-air mixture for a micro butane combustor. As a key component of the ejector, an axisymmetric convergent-divergent supersonic nozzle having a throat diameter of 42 µm is fabricated with high-precision electro-discharge machining. Operating conditions and geometric parameters of the ejector are systematically changed, and their effects on volume-flow-rate ratio are investigated in a series of experiments. Experimental data are compared with analytic solutions and CFD results. It is found that the present micro ejector achieves a maximum air-to-butane volume-flow-rate ratio of 43 when the back pressure is 11.6 Pa. It is also found that the present ejector can produce larger volume-flow-rate ratio than the previous MEMS 2D ejector at small back pressure.

  4. Aeolian Induced Erosion and Particle Entrainment

    NASA Technical Reports Server (NTRS)

    Saint, Brandon

    2007-01-01

    The Granular Physics Department at The Kennedy Space Center is addressing the problem of erosion on the lunar surface. The early stages of research required an instrument that would produce erosion at a specific rate with a specific sample variation. This paper focuses on the development and experimental procedures to measure and record erosion rates. This was done with the construction of an open air wind tunnel, and examining the relationship between airflow and particle motion.

  5. Ancestry informative markers clarify the regional admixture variation in the Costa Rican population.

    PubMed

    Cámpos-Sanchez, Rebeca; Raventós, Henriette; Barrantes, Ramiro

    2013-10-01

    The genetic structure of Costa Rica's population is complex, both by region and by individual, due to the admixture process that started during the 15th century and historical events thereafter. Previous studies have been done mostly on Amerindian populations and the Central Valley inhabitants using various microsatellites and mitochondrial DNA markers. Here, we study for the first time a random sample from all regions of the country with ancestry informative markers (AIMs) to address the individual and regional admixture proportions. A sample of 160 male individuals was screened for 78 AIMs customized in a GoldenGate platform from Illumina. We observed that this small set of AIMs has the same power of hundreds of microsatellites and thousands of single-nucleotide polymorphisms to evaluate admixture, with the benefit of reducing genotyping costs. This type of investigation is necessary to explore new genetic markers useful for forensic and genetic investigation. Our data showed a mean admixture proportion of 49.2% European (EUR), 37.8% Native American (NAM), and 12.9% African (AFR), with a disproportionate admixture composition by region. In addition, when Chinese (CHB) was included as a fourth component, the proportions changed to 45.6% EUR, 33.5% NAM, 11.7% AFR, and 9.2% CHB. The admixture trend is consistent among all regions (EUR > NAM > AFR), and individual admixture estimates vary broadly in each region. Though we did not find stratification in Costa Rica's population, gene admixture should be evaluated in future genetic studies of Costa Rica, especially for the Caribbean region, as it contains the largest proportion of African ancestry (30.9%).

  6. Evaluation of Admixtures for Use in Concrete to be Placed Underwater.

    DTIC Science & Technology

    1976-09-01

    tremie method. The tremie used consisted of a pipe topped with a receiving funnel and plugged at the discharge end to keep the pipe sealed until filled ...to determine if these commercially available admixtures when used in concrete to be placed underwater increase the flowability of the concrete. Test...results indicated that the use of either a retarding admixture or a plasticizer did not increase the flowability of equal-slump concrete, regardless of

  7. Potent social synchronization can override photic entrainment of circadian rhythms

    PubMed Central

    Fuchikawa, Taro; Eban-Rothschild, Ada; Nagari, Moshe; Shemesh, Yair; Bloch, Guy

    2016-01-01

    Circadian rhythms in behaviour and physiology are important for animal health and survival. Studies with individually isolated animals in the laboratory have consistently emphasized the dominant role of light for the entrainment of circadian rhythms to relevant environmental cycles. Although in nature interactions with conspecifics are functionally significant, social signals are typically not considered important time-givers for the animal circadian clock. Our results challenge this view. By studying honeybees in an ecologically relevant context and using a massive data set, we demonstrate that social entrainment can be potent, may act without direct contact with other individuals and does not rely on gating the exposure to light. We show for the first time that social time cues stably entrain the clock, even in animals experiencing conflicting photic and social environmental cycles. These findings add to the growing appreciation for the importance of studying circadian rhythms in ecologically relevant contexts. PMID:27210069

  8. Turbulence and entrainment length scales in large wind farms.

    PubMed

    Andersen, Søren J; Sørensen, Jens N; Mikkelsen, Robert F

    2017-04-13

    A number of large wind farms are modelled using large eddy simulations to elucidate the entrainment process. A reference simulation without turbines and three farm simulations with different degrees of imposed atmospheric turbulence are presented. The entrainment process is assessed using proper orthogonal decomposition, which is employed to detect the largest and most energetic coherent turbulent structures. The dominant length scales responsible for the entrainment process are shown to grow further into the wind farm, but to be limited in extent by the streamwise turbine spacing, which could be taken into account when developing farm layouts. The self-organized motion or large coherent structures also yield high correlations between the power productions of consecutive turbines, which can be exploited through dynamic farm control.This article is part of the themed issue 'Wind energy in complex terrains'.

  9. Synchronized Inhibition Boosts Information Transfer in Entrained Neurons

    NASA Astrophysics Data System (ADS)

    Tiesinga, Paul; Fellous, Jean-Marc; Jose, Jorge; Sejnowski, Terrence

    2001-03-01

    We investigated the ability of a single neuron to transduce the information content of a synchronized inhibitory synaptic drive, generated by an interneuron network, into an information-rich output of neuron spike times. The neuron was entrained to the periodic network drive when the jitter in the input spike times is sufficiently small (i.e. high precision), and the number of presynaptic spikes during one drive cycle is sufficiently large. The Shannon entropy of the output of spike times was reduced sharply during entrainment. Surprisingly, however, the amount of transduced information as measured by the mutual information was significantly increased during entrainment. This increase was due to the reduced contribution of the internal correlations to the output variability. These theoretical predictions were confirmed in experimental recordings from the rat neocortex and hippocampus.

  10. Admixture into and within sub-Saharan Africa.

    PubMed

    Busby, George Bj; Band, Gavin; Si Le, Quang; Jallow, Muminatou; Bougama, Edith; Mangano, Valentina D; Amenga-Etego, Lucas N; Enimil, Anthony; Apinjoh, Tobias; Ndila, Carolyne M; Manjurano, Alphaxard; Nyirongo, Vysaul; Doumba, Ogobara; Rockett, Kirk A; Kwiatkowski, Dominic P; Spencer, Chris Ca

    2016-06-21

    Similarity between two individuals in the combination of genetic markers along their chromosomes indicates shared ancestry and can be used to identify historical connections between different population groups due to admixture. We use a genome-wide, haplotype-based, analysis to characterise the structure of genetic diversity and gene-flow in a collection of 48 sub-Saharan African groups. We show that coastal populations experienced an influx of Eurasian haplotypes over the last 7000 years, and that Eastern and Southern Niger-Congo speaking groups share ancestry with Central West Africans as a result of recent population expansions. In fact, most sub-Saharan populations share ancestry with groups from outside of their current geographic region as a result of gene-flow within the last 4000 years. Our in-depth analysis provides insight into haplotype sharing across different ethno-linguistic groups and the recent movement of alleles into new environments, both of which are relevant to studies of genetic epidemiology.

  11. Effects of a midazolam-ketamine admixture in human volunteers.

    PubMed

    Morse, Zac; Sano, Kimito; Kanri, Tomio

    2004-01-01

    As the ideal sedative does not exist for all situations, we examined the effect of a midazolam-ketamine sedoanalgesic admixture in human volunteers. Ten ASA physical status I volunteers were administered loading doses of 0.07 mg/kg of midazolam followed by 0.7 mg/kg of ketamine. The same amount of midazolam and ketamine was then infused constantly over 1 hour via a 60 drops (gtts)/mL i.v. infusion set. Blood samples were analyzed for plasma catecholamine levels. Respiration rate and oxygen saturation did not alter significantly from baseline levels. Heart rate and systolic blood pressure remained stable with an increase of 15% in heart rate and 6% in systolic blood pressure only at 10 minutes following the bolus loading. Diastolic blood pressure did not alter significantly from baseline levels (P < .05). Plasma catecholamines levels remained stable except for an increase in epinephrine (38%) and norepinephrine (19%) 10 minutes following the bolus injections. Plasma dopamine levels remained unchanged. There were no cases of unpleasant dreaming, dysphoria, or emergence-type reactions. This combined nonnarcotic sedoanalgesic technique maintains spontaneous ventilation and stable cardiorespiratory parameters and may be considered as an alternative to traditional conscious sedation or general anesthesia.

  12. Estimating individual admixture proportions from next generation sequencing data.

    PubMed

    Skotte, Line; Korneliussen, Thorfinn Sand; Albrechtsen, Anders

    2013-11-01

    Inference of population structure and individual ancestry is important both for population genetics and for association studies. With next generation sequencing technologies it is possible to obtain genetic data for all accessible genetic variations in the genome. Existing methods for admixture analysis rely on known genotypes. However, individual genotypes cannot be inferred from low-depth sequencing data without introducing errors. This article presents a new method for inferring an individual's ancestry that takes the uncertainty introduced in next generation sequencing data into account. This is achieved by working directly with genotype likelihoods that contain all relevant information of the unobserved genotypes. Using simulations as well as publicly available sequencing data, we demonstrate that the presented method has great accuracy even for very low-depth data. At the same time, we demonstrate that applying existing methods to genotypes called from the same data can introduce severe biases. The presented method is implemented in the NGSadmix software available at http://www.popgen.dk/software.

  13. Admixture into and within sub-Saharan Africa

    PubMed Central

    Busby, George BJ; Band, Gavin; Si Le, Quang; Jallow, Muminatou; Bougama, Edith; Mangano, Valentina D; Amenga-Etego, Lucas N; Enimil, Anthony; Apinjoh, Tobias; Ndila, Carolyne M; Manjurano, Alphaxard; Nyirongo, Vysaul; Doumba, Ogobara; Rockett, Kirk A; Kwiatkowski, Dominic P; Spencer, Chris CA

    2016-01-01

    Similarity between two individuals in the combination of genetic markers along their chromosomes indicates shared ancestry and can be used to identify historical connections between different population groups due to admixture. We use a genome-wide, haplotype-based, analysis to characterise the structure of genetic diversity and gene-flow in a collection of 48 sub-Saharan African groups. We show that coastal populations experienced an influx of Eurasian haplotypes over the last 7000 years, and that Eastern and Southern Niger-Congo speaking groups share ancestry with Central West Africans as a result of recent population expansions. In fact, most sub-Saharan populations share ancestry with groups from outside of their current geographic region as a result of gene-flow within the last 4000 years. Our in-depth analysis provides insight into haplotype sharing across different ethno-linguistic groups and the recent movement of alleles into new environments, both of which are relevant to studies of genetic epidemiology. DOI: http://dx.doi.org/10.7554/eLife.15266.001 PMID:27324836

  14. Strong Selection at MHC in Mexicans since Admixture

    PubMed Central

    Zhou, Quan; Zhao, Liang; Guan, Yongtao

    2016-01-01

    Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the MHC region Mexicans have excessive African ancestral alleles compared to the rest of the genome, which is the hallmark of recent selection for admixed samples. The estimated selection coefficients are 0.05 and 0.07 for two datasets, which put our finding among the strongest known selections observed in humans, namely, lactase selection in northern Europeans and sickle-cell trait in Africans. Using inaccurate Amerindian training samples was a major concern for the credibility of previously reported selection signals in Latinos. Taking advantage of the flexibility of our statistical model, we devised a model fitting technique that can learn Amerindian ancestral haplotype from the admixed samples, which allows us to infer local ancestries for Mexicans using only European and African training samples. The strong selection signal at the MHC remains without Amerindian training samples. Finally, we note that medical history studies suggest such a strong selection at MHC is plausible in Mexicans. PMID:26863142

  15. Effects of a midazolam-ketamine admixture in human volunteers.

    PubMed Central

    Morse, Zac; Sano, Kimito; Kanri, Tomio

    2004-01-01

    As the ideal sedative does not exist for all situations, we examined the effect of a midazolam-ketamine sedoanalgesic admixture in human volunteers. Ten ASA physical status I volunteers were administered loading doses of 0.07 mg/kg of midazolam followed by 0.7 mg/kg of ketamine. The same amount of midazolam and ketamine was then infused constantly over 1 hour via a 60 drops (gtts)/mL i.v. infusion set. Blood samples were analyzed for plasma catecholamine levels. Respiration rate and oxygen saturation did not alter significantly from baseline levels. Heart rate and systolic blood pressure remained stable with an increase of 15% in heart rate and 6% in systolic blood pressure only at 10 minutes following the bolus loading. Diastolic blood pressure did not alter significantly from baseline levels (P < .05). Plasma catecholamines levels remained stable except for an increase in epinephrine (38%) and norepinephrine (19%) 10 minutes following the bolus injections. Plasma dopamine levels remained unchanged. There were no cases of unpleasant dreaming, dysphoria, or emergence-type reactions. This combined nonnarcotic sedoanalgesic technique maintains spontaneous ventilation and stable cardiorespiratory parameters and may be considered as an alternative to traditional conscious sedation or general anesthesia. PMID:15497296

  16. Chemical stability of admixtures combining ziconotide with baclofen during simulated intrathecal administration.

    PubMed

    Shields, David; Montenegro, Rick; Aclan, Jennifer

    2007-10-01

    Objective.  To determine the stability of admixtures combining ziconotide with commercially formulated or powdered baclofen during simulated intrathecal infusion under laboratory conditions at 37°. Materials and Methods.  Admixtures of ziconotide (25 µg/mL) with commercially formulated (1.5 mg/mL) or powdered (2.0 mg/mL) baclofen were stored in implantable intrathecal pumps at 37°. Drug concentrations were determined with high-performance liquid chromatography, and the length of time that the concentrations of both drugs remained ≥90% and ≥80% of initial (ie, the 90% and 80% stability, respectively) was estimated based on lower 95% confidence bounds obtained via linear regression. Results.  Baclofen was stable in both admixtures. In the commercially formulated baclofen admixture, the mean ziconotide concentration declined to 82.2% of initial in 30 days; the estimates for 90% and 80% stability were 12 and 29 days, respectively. In the powdered baclofen admixture, the mean ziconotide concentration declined to 87.4% of initial in 30 days; the estimates for 90% and 80% stability were 20 and 41 days, respectively. Conclusion.  Ziconotide-baclofen admixtures were more stable when prepared using powdered baclofen rather than a commercial baclofen formulation.

  17. Population divergence with or without admixture: selecting models using an ABC approach

    PubMed Central

    Sousa, V C; Beaumont, M A; Fernandes, P; Coelho, M M; Chikhi, L

    2012-01-01

    Genetic data have been widely used to reconstruct the demographic history of populations, including the estimation of migration rates, divergence times and relative admixture contribution from different populations. Recently, increasing interest has been given to the ability of genetic data to distinguish alternative models. One of the issues that has plagued this kind of inference is that ancestral shared polymorphism is often difficult to separate from admixture or gene flow. Here, we applied an approximate Bayesian computation (ABC) approach to select the model that best fits microsatellite data among alternative splitting and admixture models. We performed a simulation study and showed that with reasonably large data sets (20 loci) it is possible to identify with a high level of accuracy the model that generated the data. This suggests that it is possible to distinguish genetic patterns due to past admixture events from those due to shared polymorphism (population split without admixture). We then apply this approach to microsatellite data from an endangered and endemic Iberian freshwater fish species, in which a clustering analysis suggested that one of the populations could be admixed. In contrast, our results suggest that the observed genetic patterns are better explained by a population split model without admixture. PMID:22146980

  18. Effect of Waterproofing Admixtures on the Flexural Strength and Corrosion Resistance of Concrete

    NASA Astrophysics Data System (ADS)

    Geetha, A.; Perumal, P.

    2012-02-01

    This paper deals about the flexural strength and corrosion behaviour of concrete using waterproofing admixtures. The effect of waterproofing admixtures on the corrosion behaviour of RCC specimen has been studied by conducting accelerated corrosion test. To identify the effect of corrosion in pull out strength, corrosion process was induced by means of accelerated corrosion procedure. To accelerate the reinforcement corrosion, direct electric current was impressed on the rebar embedded in the specimen using a DC power supply system that has a facility to adjust voltage. The addition of waterproofing admixtures also shows the improvement in the flexural strength of concrete has been studied by conducting flexural strength tests on the concrete prism specimen of size 100 × 100 × 500 mm with and without admixtures for various dosages and various curing periods of 7 and 28 days. The results showed that the presence of waterproofing admixtures always improves the corrosion resistance and thus increases the strength of concrete due to the hydrophobic action of waterproofing admixtures.

  19. A Novel Admixture-Based Pharmacogenetic Approach to Refine Warfarin Dosing in Caribbean Hispanics

    PubMed Central

    Claudio-Campos, Karla; Rivera-Miranda, Giselle; Bermúdez-Bosch, Luis; Renta, Jessicca Y.; Cadilla, Carmen L.; Cruz, Iadelisse; Feliu, Juan F.; Vergara, Cunegundo; Ruaño, Gualberto

    2016-01-01

    Aim This study is aimed at developing a novel admixture-adjusted pharmacogenomic approach to individually refine warfarin dosing in Caribbean Hispanic patients. Patients & Methods A multiple linear regression analysis of effective warfarin doses versus relevant genotypes, admixture, clinical and demographic factors was performed in 255 patients and further validated externally in another cohort of 55 individuals. Results The admixture-adjusted, genotype-guided warfarin dosing refinement algorithm developed in Caribbean Hispanics showed better predictability (R2 = 0.70, MAE = 0.72mg/day) than a clinical algorithm that excluded genotypes and admixture (R2 = 0.60, MAE = 0.99mg/day), and outperformed two prior pharmacogenetic algorithms in predicting effective dose in this population. For patients at the highest risk of adverse events, 45.5% of the dose predictions using the developed pharmacogenetic model resulted in ideal dose as compared with only 29% when using the clinical non-genetic algorithm (p<0.001). The admixture-driven pharmacogenetic algorithm predicted 58% of warfarin dose variance when externally validated in 55 individuals from an independent validation cohort (MAE = 0.89 mg/day, 24% mean bias). Conclusions Results supported our rationale to incorporate individual’s genotypes and unique admixture metrics into pharmacogenetic refinement models in order to increase predictability when expanding them to admixed populations like Caribbean Hispanics. Trial Registration ClinicalTrials.gov NCT01318057 PMID:26745506

  20. Effect of mineral viscosity-enhancing admixtures on the solidification of evaporator concentrates.

    PubMed

    Lin, Chung-Yung; Huang, Wan-Ting

    2015-11-15

    It is known that partial replacement of cement by viscosity-enhancing admixtures, also known as anti-washout admixtures, affects the quality of the waste form or concrete. To reduce the bleeding rate of the paste, the characteristics of various mineral viscosity-enhancing admixtures dispersed in saline solutions were investigated, including sedimentation and viscosity. The admixture candidates included fly ash, silica fume, bentonite, and palygorskite. The effect of these admixtures blended with a cement-based matrix on the bleeding rate of the solidification of evaporator concentrates was also examined in this paper. The experimental results show the palygorskite Type 400 is the best choice to improve the quality of waste form, due to its excellent suspension property in the saline solution. The bleeding rate of paste decreased as the dispersion volume of the admixture suspension increased. For consideration of the quality of waste forms and the concentrate loading, the optimization of the palygorskite/concentrate ratio of 15-17 wt% and solidification agent/concentrate ratio of 1.0-1.2 were adopted. With this recipe, the quality of waste forms resulting from the solidification of simulated and actual evaporator concentrates mainly containing chloride met the regulations' requirements.

  1. Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation.

    PubMed

    Sanderson, Jean; Sudoyo, Herawati; Karafet, Tatiana M; Hammer, Michael F; Cox, Murray P

    2015-06-01

    Admixture between long-separated populations is a defining feature of the genomes of many species. The mosaic block structure of admixed genomes can provide information about past contact events, including the time and extent of admixture. Here, we describe an improved wavelet-based technique that better characterizes ancestry block structure from observed genomic patterns. principal components analysis is first applied to genomic data to identify the primary population structure, followed by wavelet decomposition to develop a new characterization of local ancestry information along the chromosomes. For testing purposes, this method is applied to human genome-wide genotype data from Indonesia, as well as virtual genetic data generated using genome-scale sequential coalescent simulations under a wide range of admixture scenarios. Time of admixture is inferred using an approximate Bayesian computation framework, providing robust estimates of both admixture times and their associated levels of uncertainty. Crucially, we demonstrate that this revised wavelet approach, which we have released as the R package adwave, provides improved statistical power over existing wavelet-based techniques and can be used to address a broad range of admixture questions.

  2. Fluctuations of a receding contact line near the entrainment transition

    NASA Astrophysics Data System (ADS)

    Bico, Jose; Delon, Giles; Fermigier, Marc

    2004-11-01

    We study experimentally the fluctuations of a contact line receding on a plane solid substrate. The contact line is perturbed by localized defects and we follow the relaxation of perturbations induced by these defects, as a function of the mean contact line speed and wavelengths characteristic of the perturbations. We compare our results with theoretical predictions by Golestanian and Raphael showing a divergence of the relaxation time at the entrainment transition (when the receding velocity exceeds a critical value, the liquid is entrained by the solid).

  3. Entrainment of radio frequency chaff by wind as a function of surface aerodynamic roughness.

    PubMed

    Gillies, John A; Nickling, William G

    2003-02-01

    Radio frequency (RF) chaff (approximately 2-cm x 25-microm diameter aluminum-coated glass silicate cylinders) released by military aircraft during testing and training activities has the potential to become entrained by wind upon settling to the Earth's surface. Once entrained from the surface there is the potential for RF chaff to be abraded and produce PM10 and PM2.5, which are regulated pollutants and pose health concerns. A series of portable wind tunnel tests were carried out to examine the propensity of RF chaff to become entrained by wind by defining the relationship between the threshold friction velocity of RF chaff (u(*t RF chaff)) and aerodynamic roughness (z(o)) of surfaces onto which it may deposit. The test surfaces were of varying roughness including types near the Naval Air Station (NAS), Fallon, NV, where RF chaff is released. The u(*t) of this fibrous material ranged from 0.14 m/sec for a smooth playa to 0.82 m/sec for a rough crusted playa surface with larger cobble-sized (approximately 6-26-cm diameter) rocks rising above the surface. The u(*t RF chaff) is dependent on the z(o) of the surface onto which it falls as well as the physical characteristics of the roughness. The wind regime of Fallon would allow for chaff suspension events to occur should it settle on typical surfaces in the area. However, the wind climatology of this area makes the probability of such events relatively low.

  4. Enhanced water vapor in Asian dust layer: Entrainment processes and implication for aerosol optical properties

    NASA Astrophysics Data System (ADS)

    Yoon, Soon-Chang; Kim, Sang-Woo; Kim, Jiyoung; Sohn, Byung-Ju; Jefferson, Anne; Choi, Suk-Jin; Cha, Dong-Hyun; Lee, Dong-Kyou; Anderson, Theodore L.; Doherty, Sarah J.; Weber, Rodney J.

    The entrainment process of water vapor into the dust layer during Asian dust events and the effect of water vapor associated with the Asian dust layer (ADL) on aerosol hygroscopic properties are investigated. The entrainment processes of water vapor into the ADL is examined by using a PSU/NCAR MM5 together with the backward trajectory model, radiosonde data, and remotely sensed aerosol vertical distribution data. Two dust events in the spring of 1998 and 2001 are examined in detail. The results reveal that the water vapor mixing ratio (WVMR) derived by the MM5 fits in well with the WVMR observed by radiosonde, and is well coincident with the aerosol extinction coefficient ( σep) measured by the micro-pulse lidar. The temporal evolution of the vertical distributions of WVMR and σep exhibited similar features. On the basis of a well simulation of the enhanced water vapor within the dust layer by the MM5, we trace the dust storms to examine the entrainment mechanism. The enhancement of WVMR within the ADL was initiated over the mountainous areas. The relatively moist air mass in the well-developed mixing layer over the mountainous areas is advected upward from the boundary layer by an ascending motion. However, a large portion of the water vapor within the ADL is enhanced over the edge of a highland and the plains in China. This is well supported by the simulated WVMR and the wind vectors. Aircraft-based in situ measurements of the chemical and optical properties of aerosol enable a quantitative estimation of the effect of the enhanced WVMR on the aerosol hygroscopic properties. The submicron aerosol accompanied by the dust storm caused an increase of aerosol scattering through water uptakes during the transport. This increase could be explained by the chemical fact that water-soluble submicron pollution aerosols are enriched in the ADL.

  5. Observing entrainment mixing, photochemical ozone production, and regional methane emissions by aircraft using a simple mixed-layer framework

    NASA Astrophysics Data System (ADS)

    Trousdell, Justin F.; Conley, Stephen A.; Post, Andy; Faloona, Ian C.

    2016-12-01

    In situ flight data from two distinct campaigns during winter and summer seasons in the San Joaquin Valley (SJV) of California are used to calculate boundary-layer entrainment rates, ozone photochemical production rates, and regional methane emissions. Flights near Fresno, California, in January and February 2013 were conducted in concert with the NASA DISCOVER-AQ project. The second campaign (ArvinO3), consisting of 11 days of flights spanning June through September 2013 and 2014, focused on the southern end of the SJV between Bakersfield and the small town of Arvin, California - a region notorious for frequent violations of ozone air quality standards. Entrainment velocities, the parameterized rates at which free tropospheric air is incorporated into the atmospheric boundary layer (ABL), are estimated from a detailed budget of the inversion base height. During the winter campaign near Fresno, we find an average midday entrainment velocity of 1.5 cm s-1, and a maximum of 2.4 cm s-1. The entrainment velocities derived during the summer months near Bakersfield averaged 3 cm s-1 (ranging from 0.9 to 6.5 cm s-1), consistent with stronger surface heating in the summer months. Using published data on boundary-layer heights we find that entrainment rates across the Central Valley of California have a bimodal annual distribution peaking in spring and fall when the lower tropospheric stability (LTS) is changing most rapidly.Applying the entrainment velocities to a simple mixed-layer model of three other scalars (O3, CH4, and H2O), we solve for ozone photochemical production rates and find wintertime ozone production (2.8 ± 0.7 ppb h-1) to be about one-third as large as in the summer months (8.2 ± 3.1 ppb h-1). Moreover, the summertime ozone production rates observed above Bakersfield-Arvin exhibit an inverse relationship to a proxy for the volatile organic compound (VOC) : NOx ratio (aircraft [CH4] divided by surface [NO2]), consistent with a NOx-limited photochemical

  6. The neurochemical basis of photic entrainment of the circadian pacemaker

    NASA Technical Reports Server (NTRS)

    Rea, Michael A.; Buckley, Becky; Lutton, Lewis M.

    1992-01-01

    Circadian rhythmicity in mammals is controlled by the action of a light-entrainable hypothalamus, in association with two cell clusters known as the supra chiasmatic nuclei (SCN). In the absence of temporal environmental clues, this pacemaker continues to measure time by an endogenous mechanism (clock), driving biochemical, physiological, and behavioral rhythms that reflect the natural period of the pacemaker oscillation. This endogenous period usually differs slightly from 24 hours (i.e., circadian). When mammals are maintained under a 24 hour light-dark (LD) cycle, the pacemaker becomes entrained such that the period of the pacemaker oscillation matches that of the LD cycle. Potentially entraining photic information is conveyed to the SCN via a direct retinal projection, the retinohypothalamic tract (RHT). RHT neurotransmission is thought to be mediated by the release of excitatory amino acids (EAA) in the SCN. In support of this hypothesis, recent experiments using nocturnal rodents have shown that EAA antagonists block the effects of light on pacemaker-driven behavioral rhythms, and attenuate light induced gene expression in SCN cells. An understanding of the neurochemical basis of the photic entrainment process would facilitate the development of pharmacological strategies for maintaining synchrony among shift workers in environments, such as the Space Station, which provide unreliable or conflicting temporal photic clues.

  7. Effect of various intake designs on zooplankton entrainment

    SciTech Connect

    Dycus, D.L.

    1983-03-01

    Field studies were conducted at the intakes of three Tennessee Valley Authority electric power plants to determine whether intake design is a feasible means of mitigating effects on zooplankton by minimizing the quantity entrained. Three intake designs were evaluated: one with a shallow skimmer wall, one with a deep skimmer wall, and one with no skimmer wall. Many sample sets from these studies were highly variable because of inadequate sample replication, thus precluding the use of statistical tests on some of the data. Where possible, an analysis of variance and a Student, Newman, Keuls multiple range test were computed and tested at the 0.05 level. Several studies indicated possible differences between day and night in the quantity of zooplankton entrained. The greater quantities entrained at night were related to a greater abundance in the source water body at night rather than to intake design. These results indicate that time-of-day differences might be used to mitigate effects on zooplankton at some intakes if the intake could be operated to require less cooling water when concentrations were greatest. None of these studies indicated that the intake designs studied minimized the quantity of zooplankton entrained because the quantities in the intake canals were similar to the quantities in the source water body.

  8. ENTRAINED-FLOW ADSORPTION OF MERCURY USING ACTIVATED CARBON

    EPA Science Inventory

    Bench-scale experiments were conducted in a flow reactor to simulate entrained-flow capture of elemental mercury (Hg) by activated carbon. Adsorption of Hg by several commercial activated carbons was examined at different carbon-to-mercury (C:Hg) ratios (by weight) (600:1 - 29000...

  9. Articulatory constraints on spontaneous entrainment between speech and manual gesture.

    PubMed

    Zelic, Gregory; Kim, Jeesun; Davis, Chris

    2015-08-01

    The present study examined the extent to which speech and manual gestures spontaneously entrain in a non-communicative task. Participants had to repeatedly utter nonsense /CV/ syllables while continuously moving the right index finger in flexion/extension. No instructions to coordinate were given. We manipulated the type of syllable uttered (/ba/ vs. /sa/), and vocalization (phonated vs. silent speech). Assuming principles of coordination dynamics, a stronger entrainment between the fingers oscillations and the jaw motion was predicted (1) for /ba/, due to expected larger amplitude of jaw motion and (2) in phonated speech, due to the auditory feedback. Fifteen out of twenty participants showed simple ratios of speech to finger cycles (1:1, 1:2 or 2:1). In contrast with our predictions, speech-gesture entrainment was stronger when vocalizing /sa/ than /ba/, also more widely distributed on an in-phase mode. Furthermore, results revealed a spatial anchoring and an increased temporal variability in jaw motion when producing /sa/. We suggested that this indicates a greater control of the speech articulators for /sa/, making the speech performance more receptive to environmental forces, resulting in the greater entrainment observed to gesture oscillations. The speech-gesture coordination was maintained in silent speech, suggesting a somatosensory basis for their endogenous coupling.

  10. Queueing-Based Synchronization and Entrainment for Synthetic Gene Oscillators

    NASA Astrophysics Data System (ADS)

    Mather, William; Butzin, Nicholas; Hochendoner, Philip; Ogle, Curtis

    Synthetic gene oscillators have been a major focus of synthetic biology research since the beginning of the field 15 years ago. They have proven to be useful both for biotechnological applications as well as a testing ground to significantly develop our understanding of the design principles behind synthetic and native gene oscillators. In particular, the principles governing synchronization and entrainment of biological oscillators have been explored using a synthetic biology approach. Our work combines experimental and theoretical approaches to specifically investigate how a bottleneck for protein degradation, which is present in most if not all existing synthetic oscillators, can be leveraged to robustly synchronize and entrain biological oscillators. We use both the terminology and mathematical tools of queueing theory to intuitively explain the role of this bottleneck in both synchronization and entrainment, which extends prior work demonstrating the usefulness of queueing theory in synthetic and native gene circuits. We conclude with an investigation of how synchronization and entrainment may be sensitive to the presence of multiple proteolytic pathways in a cell that couple weakly through crosstalk. This work was supported by NSF Grant #1330180.

  11. Entrainment at a sediment concentration interface in turbulent channel flow

    NASA Astrophysics Data System (ADS)

    Salinas, Jorge; Shringarpure, Mrugesh; Cantero, Mariano; Balachandar, S.

    2016-11-01

    In this work we address the role of turbulence on entrainment at a sediment concentration interface. This process can be conceived as the entrainment of sediment-free fluid into the bottom sediment-laden flow, or alternatively, as the entrainment of sediment into the top sediment-free flow. We have performed direct numerical simulations for fixed Reynolds and Schmidt numbers while varying the values of Richardson number and particle settling velocity. The analysis performed shows that the ability of the flow to pick up a given sediment size decreases with the distance from the bottom, and thus only fine enough sediment particles are entrained across the sediment concentration interface. For these cases, the concentration profiles evolve to a final steady state in good agreement with the well-known Rouse profile. The approach towards the Rouse profile happens through a transient self-similar state. Detailed analysis of the three dimensional structure of the sediment concentration interface shows the mechanisms by which sediment particles are lifted up by tongues of sediment-laden fluid with positive correlation between vertical velocity and sediment concentration. Finally, the mixing ability of the flow is addressed by monitoring the center of mass of the sediment-laden layer. With the support of ExxonMobil, NSF, ANPCyT, CONICET.

  12. Lexical Entrainment and Lexical Differentiation in Reference Phrase Choice

    ERIC Educational Resources Information Center

    Van Der Wege, Mija M.

    2009-01-01

    Speakers reuse prior references to objects when choosing reference phrases, a phenomenon known as lexical entrainment. One explanation is that speakers want to maintain a set of previously established referential precedents. Speakers may also contrast any new referents against this previously established set, thereby avoiding applying the same…

  13. Vasoactive intestinal polypeptide entrains circadian rhythms in astrocytes

    PubMed Central

    Marpegan, Luciano; Krall, Thomas J.; Herzog, Erik D.

    2009-01-01

    Many mammalian cell types show daily rhythms in gene expression driven by a circadian pacemaker. For example, cultured astrocytes display circadian rhythms in Period1 and Period2 expression. It is not known, however, how or which intercellular factors synchronize and sustain rhythmicity in astrocytes. Because astrocytes are highly sensitive to vasoactive intestinal polypeptide (VIP), a neuropeptide released by neurons and important for the coordination of daily cycling, we hypothesized that VIP entrains circadian rhythms in astrocytes. We used astrocyte cultures derived from knock-in mice containing a bioluminescent reporter of PERIOD2 (PER2) protein, to assess the effects of VIP on the rhythmic properties of astrocytes. VIP induced a dose-dependent increase in the peak-to-trough amplitude of the ensemble rhythms of PER2 expression with maximal effects near 100nM VIP and threshold values between 0.1 and 1 nM. VIP also induced dose- and phase-dependent shifts in PER2 rhythms and daily VIP administration entrained bioluminescence rhythms of astrocytes to a predicted phase angle. This is the first demonstration that a neuropeptide can entrain glial cells to a phase predicted by a phase response curve. We conclude that VIP potently entrains astrocytes in vitro and is a candidate for coordinating daily rhythms among glia in the brain. PMID:19346450

  14. Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

    PubMed Central

    Decker, Jared E.; McKay, Stephanie D.; Rolf, Megan M.; Kim, JaeWoo; Molina Alcalá, Antonio; Sonstegard, Tad S.; Hanotte, Olivier; Götherström, Anders; Seabury, Christopher M.; Praharani, Lisa; Babar, Masroor Ellahi; Correia de Almeida Regitano, Luciana; Yildiz, Mehmet Ali; Heaton, Michael P.; Liu, Wan-Sheng; Lei, Chu-Zhao; Reecy, James M.; Saif-Ur-Rehman, Muhammad; Schnabel, Robert D.; Taylor, Jeremy F.

    2014-01-01

    The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers scored in 1,543 animals, we evaluate the population structure of 134 domesticated bovid breeds. Regardless of the analytical method or sample subset, the three major groups of Asian indicine, Eurasian taurine, and African taurine were consistently observed. Patterns of geographic dispersal resulting from co-migration with humans and exportation are recognizable in phylogenetic networks. All analytical methods reveal patterns of hybridization which occurred after divergence. Using 19 breeds, we map the cline of indicine introgression into Africa. We infer that African taurine possess a large portion of wild African auroch ancestry, causing their divergence from Eurasian taurine. We detect exportation patterns in Asia and identify a cline of Eurasian taurine/indicine hybridization in Asia. We also identify the influence of species other than Bos taurus taurus and B. t. indicus in the formation of Asian breeds. We detect the pronounced influence of Shorthorn cattle in the formation of European breeds. Iberian and Italian cattle possess introgression from African taurine. American Criollo cattle originate from Iberia, and not directly from Africa with African ancestry inherited via Iberian ancestors. Indicine introgression into American cattle occurred in the Americas, and not Europe. We argue that cattle migration, movement and trading followed by admixture have been important forces in shaping modern bovine genomic variation. PMID:24675901

  15. Extensive Admixture and Selective Pressure Across the Sahel Belt

    PubMed Central

    Triska, Petr; Soares, Pedro; Patin, Etienne; Fernandes, Veronica; Cerny, Viktor; Pereira, Luisa

    2015-01-01

    Genome-wide studies of African populations have the potential to reveal powerful insights into the evolution of our species, as these diverse populations have been exposed to intense selective pressures imposed by infectious diseases, diet, and environmental factors. Within Africa, the Sahel Belt extensively overlaps the geographical center of several endemic infections such as malaria, trypanosomiasis, meningitis, and hemorrhagic fevers. We screened 2.5 million single nucleotide polymorphisms in 161 individuals from 13 Sahelian populations, which together with published data cover Western, Central, and Eastern Sahel, and include both nomadic and sedentary groups. We confirmed the role of this Belt as a main corridor for human migrations across the continent. Strong admixture was observed in both Central and Eastern Sahelian populations, with North Africans and Near Eastern/Arabians, respectively, but it was inexistent in Western Sahelian populations. Genome-wide local ancestry inference in admixed Sahelian populations revealed several candidate regions that were significantly enriched for non-autochthonous haplotypes, and many showed to be under positive selection. The DARC gene region in Arabs and Nubians was enriched for African ancestry, whereas the RAB3GAP1/LCT/MCM6 region in Oromo, the TAS2R gene family in Fulani, and the ALMS1/NAT8 in Turkana and Samburu were enriched for non-African ancestry. Signals of positive selection varied in terms of geographic amplitude. Some genomic regions were selected across the Belt, the most striking example being the malaria-related DARC gene. Others were Western-specific (oxytocin, calcium, and heart pathways), Eastern-specific (lipid pathways), or even population-restricted (TAS2R genes in Fulani, which may reflect sexual selection). PMID:26614524

  16. Admixture mapping of lung cancer in 1812 African-Americans.

    PubMed

    Schwartz, Ann G; Wenzlaff, Angela S; Bock, Cathryn H; Ruterbusch, Julie J; Chen, Wei; Cote, Michele L; Artis, Amanda S; Van Dyke, Alison L; Land, Susan J; Harris, Curtis C; Pine, Sharon R; Spitz, Margaret R; Amos, Christopher I; Levin, Albert M; McKeigue, Paul M

    2011-03-01

    Lung cancer continues to be the leading cause of cancer death in the USA and the best example of a cancer with undisputed evidence of environmental risk. However, a genetic contribution to lung cancer has also been demonstrated by studies of familial aggregation, family-based linkage, candidate gene studies and most recently genome-wide association studies (GWAS). The African-American population has been underrepresented in these genetic studies and has patterns of cigarette use and linkage disequilibrium that differ from patterns in other populations. Therefore, studies in African-Americans can provide complementary data to localize lung cancer susceptibility genes and explore smoking dependence-related genes. We used admixture mapping to further characterize genetic risk of lung cancer in a series of 837 African-American lung cancer cases and 975 African-American controls genotyped at 1344 ancestry informative single-nucleotide polymorphisms. Both case-only and case-control analyses were conducted using ADMIXMAP adjusted for age, sex, pack-years of smoking, family history of lung cancer, history of emphysema and study site. In case-only analyses, excess European ancestry was observed over a wide region on chromosome 1 with the largest excess seen at rs6587361 for non-small-cell lung cancer (NSCLC) (Z-score = -4.33; P = 1.5 × 10⁻⁵) and for women with NSCLC (Z-score = -4.82; P = 1.4 × 10⁻⁶). Excess African ancestry was also observed on chromosome 3q with a peak Z-score of 3.33 (P = 0.0009) at rs181696 among ever smokers with NSCLC. These results add to the findings from the GWAS in Caucasian populations and suggest novel regions of interest.

  17. Admixture mapping of genetic variants for uterine fibroids

    PubMed Central

    Zhang, Kui; Wiener, Howard; Aissani, Brahim

    2015-01-01

    Uterine leiomyoma (UL) are benign neoplasms arising from the smooth muscle cells of the uterus. One of the established risk factors for UL is African American ethnicity. Studies have consistently shown that African Americans have 2-3 times higher risk compared with that of non-Hispanic Whites. However, there is still no adequate explanation for the higher risk among African Americans. To investigate the genetic contribution to the observed difference between the African American and European American populations, we conducted an admixture scan in 525 eligible African American women participants to the NIEHS uterine fibroid study (NIEHS-UFS). In models with no stratification, we found multiple genomic regions showing significant and suggestive evidence of association, with chromosomal band 2q32.2 at rs256552 showing the highest score (Z-score = 7.86, Bonferroni adjusted p-value = 5.5×10-12) consistent with the suggestive evidence reported for this genomic region in the Black Women's Health Study. However, in models stratified by the body mass index (BMI) covariate, chromosomal 1q42.2 was the sole genomic region that consistently showed suggestive associations across the BMI categories tested (Z-scores ≤ -3.96, Bonferroni adjusted p-values ≤ 0.107). In age-stratified models, a significant association was observed in the older category (age > 40) reaching a Z-score of 6.44 (Bonferroni-adjusted p-value = 1.64 × 10-7) at rs256552. The mean percentage of European ancestry among cases was lower than that among controls in the NIEHS-UFS study. However, our study did not show a significant association between mean percentage of European ancestry and UL. PMID:26040208

  18. Implications of the Admixture Process in Skin Color Molecular Assessment

    PubMed Central

    de Cerqueira, Caio Cesar Silva; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice. PMID:24809478

  19. Implications of the admixture process in skin color molecular assessment.

    PubMed

    Cerqueira, Caio Cesar Silva de; Hünemeier, Tábita; Gomez-Valdés, Jorge; Ramallo, Virgínia; Volasko-Krause, Carla Daiana; Barbosa, Ana Angélica Leal; Vargas-Pinilla, Pedro; Dornelles, Rodrigo Ciconet; Longo, Danaê; Rothhammer, Francisco; Bedoya, Gabriel; Canizales-Quinteros, Samuel; Acuña-Alonzo, Victor; Gallo, Carla; Poletti, Giovanni; González-José, Rolando; Salzano, Francisco Mauro; Callegari-Jacques, Sídia Maria; Schuler-Faccini, Lavínia; Ruiz-Linares, Andrés; Cátira Bortolini, Maria

    2014-01-01

    The understanding of the complex genotype-phenotype architecture of human pigmentation has clear implications for the evolutionary history of humans, as well as for medical and forensic practices. Although dozens of genes have previously been associated with human skin color, knowledge about this trait remains incomplete. In particular, studies focusing on populations outside the European-North American axis are rare, and, until now, admixed populations have seldom been considered. The present study was designed to help fill this gap. Our objective was to evaluate possible associations of 18 single nucleotide polymorphisms (SNPs), located within nine genes, and one pseudogene with the Melanin Index (MI) in two admixed Brazilian populations (Gaucho, N = 352; Baiano, N = 148) with different histories of geographic and ethnic colonization. Of the total sample, four markers were found to be significantly associated with skin color, but only two (SLC24A5 rs1426654, and SLC45A2 rs16891982) were consistently associated with MI in both samples (Gaucho and Baiano). Therefore, only these 2 SNPs should be preliminarily considered to have forensic significance because they consistently showed the association independently of the admixture level of the populations studied. We do not discard that the other two markers (HERC2 rs1129038 and TYR rs1126809) might be also relevant to admixed samples, but additional studies are necessary to confirm the real importance of these markers for skin pigmentation. Finally, our study shows associations of some SNPs with MI in a modern Brazilian admixed sample, with possible applications in forensic genetics. Some classical genetic markers in Euro-North American populations are not associated with MI in our sample. Our results point out the relevance of considering population differences in selecting an appropriate set of SNPs as phenotype predictors in forensic practice.

  20. Inferring separate parental admixture components in unknown DNA samples using autosomal SNPs.

    PubMed

    Crouch, Daniel J M; Weale, Michael E

    2012-12-01

    The identification of ancestral admixture proportions for human DNA samples has recently had success in forensic cases. Current methods infer admixture proportions for the target sample, but not for their parents, which provides an additional layer of information that may aid certain forensic investigations. We describe new maximum likelihood methods (LEAPFrOG and LEAPFrOG Expectation Maximisation), for inferring both an individual's admixture proportions and the admixture proportions possessed by the unobserved parents, with respect to two or more source populations, using single-nucleotide polymorphism data typed only in the target individual. This is achieved by examining the increase in heterozygosity in the offspring of parents who are from different populations or who represent different mixtures from a number of source populations. We validated the methods via simulation; combining chromosomes from different Hapmap Phase III population samples to emulate first-generation admixture. Performance was strong for individuals with mixed African/European (YRI/CEU) ancestry, but poor for mixed Japanese/Chinese (JPT/CHB) ancestry, reflecting the difficulty in distinguishing closely related source populations. A total of 11 African-American trios were used to compare the parental admixture inferred from their own genotypes against that inferred purely from their offspring genotypes. We examined the performance of 34 ancestry informative markers from a multiplex kit for ancestry inference. Simulations showed that estimates were unreliable when parents had similar admixture, suggesting more markers are needed. Our results demonstrate that ancestral backgrounds of case samples and their parents are obtainable to aid in forensic investigations, provided that high-throughput methods are adopted by the forensic community.

  1. Obtaining Potential Virtual Temperature Profiles, Entrainment Fluxes, and Spectra from Mini Unmanned Aerial Vehicle Data

    NASA Astrophysics Data System (ADS)

    Dias, N. L.; Gonçalves, J. E.; Freire, L. S.; Hasegawa, T.; Malheiros, A. L.

    2012-10-01

    We present a simple but effective small unmanned aerial vehicle design that is able to make high-resolution temperature and humidity measurements of the atmospheric boundary layer. The air model used is an adapted commercial design, and is able to carry all the instrumentation (barometer, temperature and humidity sensor, and datalogger) required for such measurements. It is fitted with an autopilot that controls the plane's ascent and descent in a spiral to 1800 m above ground. We describe the results obtained on three different days when the plane, called Aerolemma-3, flew continuously throughout the day. Surface measurements of the sensible virtual heat flux made simultaneously allowed the calculation of all standard convective turbulence scales for the boundary layer, as well as a rigorous test of existing models for the entrainment flux at the top of the boundary layer, and for its growth. A novel approach to calculate the entrainment flux from the top-down, bottom-up model of Wynagaard and Brost is used. We also calculated temperature fluctuations by means of a spectral high-pass filter, and calculated their spectra. Although the time series are small, tapering proved ineffective in this case. The spectra from the untapered series displayed a consistent -5/3 behaviour, and from them it was possible to calculate a dimensionless dissipation function, which exhibited the expected similarity behaviour against boundary-layer bulk stability. The simplicity, ease of use and economy of such small aircraft make us optimistic about their usefulness in boundary-layer research.

  2. Saltation thresholds and entrainment of fine particles at Earth and Martian pressures

    NASA Technical Reports Server (NTRS)

    Leach, Rodman; Greeley, Ronald; Pollack, James

    1989-01-01

    An open circuit wind tunnel designed to operate in a large vacuum chamber was built at NASA-Ames to investigate saltation threshold, flux, deflation rates, and other aeolian phenomena on the planet Mars. The vacuum chamber will operate at pressures as low as 4 mbar, and the tunnel operates at windspeeds as high as 150 m/sec. Either air or CO2 can be used as a working fluid. It was found that, to a first order approximation, the same dynamic pressure was required at Martian pressure to entrain or saltate particles as was required on Earth, although wind and particle speed are considerably higher at Martian pressure. A 2nd wind tunnel, designed to operate aboard the NASA KC-135 0-g aircraft to obtain information on the effect of gravity on saltation threshold and the interparticle force at 0-g, is also described and test data presented. Some of the experiments are summarized and various aspects of low pressure aeolian entrainment for particles 12 to 100 micron in diameter are discussed, some of them unique to low pressure testing and some common in Earth pressure particle transport testing. The facility, the modes of operation, and the materials used are described.

  3. Entrained neural oscillations in multiple frequency bands comodulate behavior.

    PubMed

    Henry, Molly J; Herrmann, Björn; Obleser, Jonas

    2014-10-14

    Our sensory environment is teeming with complex rhythmic structure, to which neural oscillations can become synchronized. Neural synchronization to environmental rhythms (entrainment) is hypothesized to shape human perception, as rhythmic structure acts to temporally organize cortical excitability. In the current human electroencephalography study, we investigated how behavior is influenced by neural oscillatory dynamics when the rhythmic fluctuations in the sensory environment take on a naturalistic degree of complexity. Listeners detected near-threshold gaps in auditory stimuli that were simultaneously modulated in frequency (frequency modulation, 3.1 Hz) and amplitude (amplitude modulation, 5.075 Hz); modulation rates and types were chosen to mimic the complex rhythmic structure of natural speech. Neural oscillations were entrained by both the frequency modulation and amplitude modulation in the stimulation. Critically, listeners' target-detection accuracy depended on the specific phase-phase relationship between entrained neural oscillations in both the 3.1-Hz and 5.075-Hz frequency bands, with the best performance occurring when the respective troughs in both neural oscillations coincided. Neural-phase effects were specific to the frequency bands entrained by the rhythmic stimulation. Moreover, the degree of behavioral comodulation by neural phase in both frequency bands exceeded the degree of behavioral modulation by either frequency band alone. Our results elucidate how fluctuating excitability, within and across multiple entrained frequency bands, shapes the effective neural processing of environmental stimuli. More generally, the frequency-specific nature of behavioral comodulation effects suggests that environmental rhythms act to reduce the complexity of high-dimensional neural states.

  4. Entrainment of spontaneous cerebral hemodynamic oscillations to behavioral responses.

    PubMed

    Pfurtscheller, Gert; Walther, Mario; Bauernfeind, Günther; Barry, Robert J; Witte, Herbert; Müller-Putz, Gernot R

    2014-04-30

    Entrainment in physiological systems can be manifest in cases where phase-coupling (synchronization) between slow intrinsic oscillations and periodic motor responses, or vice versa, takes place. To test whether voluntary movement has something in common with entrainment of slow hemodynamic oscillations to motor responses, we studied blood pressure (BP), heart rate beat-to-beat intervals (RRI) and prefrontal (de)oxyhemoglobin (Hb/HbO2) during 5min of rest, 10min of self-paced, voluntary movements and 10min of stimulus-paced movements at 10s intervals in 9 subjects. Subjects were divided into 2 groups according to the timing of voluntary finger movements. It appeared that these movements occurred at relatively regular intervals of approximately 10s in 5 subjects (group A); while 4 subjects showed random or very short inter-movement intervals (group B). Two remarkable results were obtained: first, the phase coupling (COH(2)) between BP and RRI showed a significant (p=0.0061) interaction between activity (rest vs. movement) and group (A vs. B), with an increased (p=0.0003) coupling in group A. Second, the COH(2) between BP and Hb oscillations showed a significant (p=0.034) interaction between activity and group, with a decreased (p=0.079) coupling in group B. These results suggest that subjects able to initiate self-paced, voluntary movements at relatively regular intervals of ∼10s show an entrainment potential between physiological oscillations and motor responses. This also provides the first evidence that not only physiological oscillations can be entrained to motor responses, but also motor responses (voluntary movements) can be entrained to slow intrinsic oscillations.

  5. Entrained neural oscillations in multiple frequency bands comodulate behavior

    PubMed Central

    Henry, Molly J.; Herrmann, Björn

    2014-01-01

    Our sensory environment is teeming with complex rhythmic structure, to which neural oscillations can become synchronized. Neural synchronization to environmental rhythms (entrainment) is hypothesized to shape human perception, as rhythmic structure acts to temporally organize cortical excitability. In the current human electroencephalography study, we investigated how behavior is influenced by neural oscillatory dynamics when the rhythmic fluctuations in the sensory environment take on a naturalistic degree of complexity. Listeners detected near-threshold gaps in auditory stimuli that were simultaneously modulated in frequency (frequency modulation, 3.1 Hz) and amplitude (amplitude modulation, 5.075 Hz); modulation rates and types were chosen to mimic the complex rhythmic structure of natural speech. Neural oscillations were entrained by both the frequency modulation and amplitude modulation in the stimulation. Critically, listeners’ target-detection accuracy depended on the specific phase–phase relationship between entrained neural oscillations in both the 3.1-Hz and 5.075-Hz frequency bands, with the best performance occurring when the respective troughs in both neural oscillations coincided. Neural-phase effects were specific to the frequency bands entrained by the rhythmic stimulation. Moreover, the degree of behavioral comodulation by neural phase in both frequency bands exceeded the degree of behavioral modulation by either frequency band alone. Our results elucidate how fluctuating excitability, within and across multiple entrained frequency bands, shapes the effective neural processing of environmental stimuli. More generally, the frequency-specific nature of behavioral comodulation effects suggests that environmental rhythms act to reduce the complexity of high-dimensional neural states. PMID:25267634

  6. Method of removing entrained particles from flue gas and composition of matter

    SciTech Connect

    Radway, J.E.; Bennett, R.P.

    1988-04-19

    A composition of matter to treat particles entrained in flue gas, is described comprising: a caustic liquid used to adjust resistivity of the entrained particles; and inert particulate matter supporting the caustic liquid for inhibiting chemical action of the caustic liquid until used to adjust the resistivity of the entrained particles, the inert particulate matter supporting sufficient caustic liquid to adjust the resistivity of the entrained particles.

  7. Estimated Entrainment of Dungeness Crab During Dredging For The Columbia River Channel Improvement Project

    SciTech Connect

    Pearson, Walter H.; Williams, Greg D.; Skalski, John R.

    2002-12-01

    The studies reported here focus on issues regarding the entrainment of Dungeness crab related to the proposed Columbia River Channel Improvement Project and provided direct measurements of crab entrainment rates at three locations (Desdomona Shoals, Upper Sands, and Miller Sands) from RM4 to RM24 during summer 2002. Entrainment rates for all age classes of crabs ranged from zero at Miller Sands to 0.224 crabs per cy at Desdemona Shoals in June 2002. The overall entrainment rate at Desdomona Shoals in September was 0.120 crabs per cy. A modified Dredge Impact Model (DIM) used the summer 2002 entrainment rates to project crab entrainment and adult equivalent loss and loss to the fishery for the Channel Improvement Project. To improve the projections, entrainment data from Flavel Bar is needed. The literature, analyses of salinity intrusion scenarios, and the summer 2002 site-specific data on entrainment and salinity all indicate that bottom salinity influences crab distribution and entrainment, especially at lower salinities. It is now clear from field measurements of entrainment rates and salinity during a period of low river flow (90-150 Kcfs) and high salinity intrusion that entrainment rates are zero where bottom salinity is less than 16 o/oo most of the time. Further, entrainment rates of 2+ and older crab fall with decreasing salinity in a clear and consistent manner. More elaboration of the crab distribution- salinity model, especially concerning salinity and the movements of 1+ crab, is needed.

  8. Mathematical modeling of heat exchange between mine air and rock mass during fire

    SciTech Connect

    A.E. Krasnoshtein; B.P. Kazakov; A.V. Shalimov

    2006-05-15

    Solution of problems on heat exchange between ventilating air and rock mass and on gas admixture propagation in mine workings serve as a base for considering changes in heat-gas-air state at a mine after inflammation. The presented mathematical relations allow calculation of a varied velocity and movement direction of air flows, their temperatures and smoking conditions during fire.

  9. Mechanical Characteristics of Hardened Concrete with Different Mineral Admixtures: A Review

    PubMed Central

    2014-01-01

    The available literature identifies that the addition of mineral admixture as partial replacement of cement improves the microstructure of the concrete (i.e., porosity and pore size distribution) as well as increasing the mechanical characteristics such as drying shrinkage and creep, compressive strength, tensile strength, flexural strength, and modulus of elasticity; however, no single document is available in which review and comparison of the influence of the addition of these mineral admixtures on the mechanical characteristics of the hardened pozzolanic concretes are presented. In this paper, based on the reported results in the literature, mechanical characteristics of hardened concrete partially containing mineral admixtures including fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA) are discussed and it is concluded that the content and particle size of mineral admixture are the parameters which significantly influence the mechanical properties of concrete. All mineral admixtures enhance the mechanical properties of concrete except FA and GGBS which do not show a significant effect on the strength of concrete at 28 days; however, gain in strength at later ages is considerable. Moreover, the comparison of the mechanical characteristics of different pozzolanic concretes suggests that RHA and SF are competitive. PMID:24688443

  10. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs

    PubMed Central

    Monzón, J.; Kays, R.; Dykhuizen, D. E.

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single nucleotide polymorphisms in 427 canids in order to examine the prevalence, spatial distribution, and ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, reveal a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. PMID:24148003

  11. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs.

    PubMed

    Monzón, J; Kays, R; Dykhuizen, D E

    2014-01-01

    The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single-nucleotide polymorphisms in 427 canids to examine the prevalence, spatial distribution and the ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, revealed a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers.

  12. Genetic admixture and lineage separation in a southern Andean plant

    PubMed Central

    Morello, Santiago; Sede, Silvana M.

    2016-01-01

    varieties of E. alpina: var. alpina is more closely related to E. rubra and other species than to its own counterpart E. alpina var. carmelitana. Geometric morphometrics analysis (Elliptic Fourier descriptors) revealed significant differences in leaf shape between varieties. We found that diversity in Escallonia species analyzed here is geographically structured and deep divergence between varieties of E. alpina could be associated to ancient evolutionary events like orogeny. Admixture in southern populations could be the result of hybridization at the margins of the parental species’ distribution range. PMID:27179539

  13. Landslide boost from entrainment of erodible material along the slope

    NASA Astrophysics Data System (ADS)

    Farin, M.; Mangeney, A.; Roche, O.; Ionescu, I.; Hungr, O.

    2011-12-01

    Landslides, debris flows, pyroclastic flows and avalanches are natural hazards that threaten life and property in mountainous, volcanic, coastal and seismically active areas. The granular mass tends to accelerate as gravity pulls it down the slope, and will slow on more gentle slopes, when interaction forces dissipating energy overcome the driving forces. The entrainment of underlying sediments or debris into the gravitational granular flows is suspected to be critical to their dynamics, but direct measurement of material entrainment in natural flows is very difficult. Nevertheless, qualitative and quantitative field observations suggest that material entrainment can either increase or decrease flow velocity and deposit extent, depending on the geological setting and the type of gravitational flow. Based on laboratory experiments on dry granular flows, we show here that erosion of granular material already present on the bed can significantly increase the size and mobility of the flow and possibly generate surges. We present laboratory experiments of granular material flowing over an inclined plane covered by an erodible bed, designed to mimic erosion processes of natural flows traveling over deposits built up by earlier events. The controlling parameters are the inclination of the plane and the thickness of the erodible layer. Different methods are used to prepare the erodible bed, thus leading to various degrees of compaction. We show that erosion processes increases the flow mobility (i. e. runout) by up to 40 % over slopes with inclination close to the repose angle of the grains. The effect is observed even for very thin erodible beds. We demonstrate that the increase of mass of the flowing grains caused by entrainment of the erodible layer is not enough to explain the observed increase in velocity and runout of the granular mass. Erosion efficiency is shown to strongly depend on the slope and on the nature (i. e. degree of compaction) of the erodible bed

  14. Investigation of entrainment and thermal properties of a cryogenic dense-gas cloud using optical measurement techniques.

    PubMed

    Kunsch, J P; Rösgen, T

    2006-09-01

    Cryogenic dense-gas clouds have been investigated in a heavy-gas channel under controlled source and ambient conditions. Advantage is taken from new, non-intrusive optical measurement techniques (e.g. image correlation velocimetry, ICV, and background oriented Schlieren, BOS) providing detailed pictures of the temperature and velocity field in relevant regions of the cloud. The ice particles in the cloud, formed by nucleation, represent a natural seeding to be used as tracers, which have the advantage of behaving passively. Two layers can be identified in a cryogenic gas cloud: a lower cold layer, which is visible due to the presence of ice particles, and an invisible upper layer, where the ice particles have melted, mostly due to heat addition by air entrainment into the upper layer. A two-layer model has been applied to a generic element of the cloud, where detailed experimental data regarding velocity and temperature are available. Thermal- and dilution behaviour can be interpreted by means of the model which is presented in detail. A global entrainment parameter is deduced allowing a simple comparison with existing experimental information obtained by other traditional experimental techniques. The numerical values of the present entrainment parameter agree well with the correlations proposed by other authors. Thermal effects, such as heat transfer from the ground, appear to be very important. In addition, the visible height of the cloud can be predicted in relative good agreement with the experimental observations, by means of a thermal balance including the phase transition of the ice particles.

  15. Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

    NASA Technical Reports Server (NTRS)

    Vu, Bruce; Oliveira, Justin

    2011-01-01

    This paper describes the Computation Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing test of the Taurus II launch vehicle. The finite rate chemistry is used to model the combustion process involving rocket propellant (RP 1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

  16. Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

    NASA Technical Reports Server (NTRS)

    Vu, Bruce T.; Oliveira, Justin

    2011-01-01

    This paper describes the Computational Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing tests of the Taurus-II launch vehicle. The finite-rate chemistry is used to model the combustion process involving rocket propellant (RP-1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region, thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

  17. Population evolution in 20th-century Easter Island: endogamy and admixture.

    PubMed

    Hernández, M; García-Moro, C; Moral, P; González-Martín, A

    2000-04-01

    We studied the 20th-century evolution of the Rapanui population of Easter Island, the most geographically isolated in the world, to analyze the current process of admixture. Using parochial birth records, we determined origin of the birth parents based on their surnames. The origin of parents reveals two stages of population evolution: endogamy, due to the isolation of the island, but with a strong rejection of isonymous marriages; and admixture, beginning in 1965 with the opening of the island to the rest of the world. We used Lasker's coefficient (Lasker's Ri) and the Shannon-Weaver coefficient of diversity (H) to characterize both stages. The gene flow evaluated from admixture has increased significantly since 1965. Births from exogamous unions represented 3.5% of total births from 1937 to 1965. increased to 43.2% between 1966 and 1980, and constituted 50.8% of all births between 1981 and 1996.

  18. PREMIX: PRivacy-preserving EstiMation of Individual admiXture

    PubMed Central

    Chen, Feng; Dow, Michelle; Ding, Sijie; Lu, Yao; Jiang, Xiaoqian; Tang, Hua; Wang, Shuang

    2016-01-01

    In this paper we proposed a framework: PRivacy-preserving EstiMation of Individual admiXture (PREMIX) using Intel software guard extensions (SGX). SGX is a suite of software and hardware architectures to enable efficient and secure computation over confidential data. PREMIX enables multiple sites to securely collaborate on estimating individual admixture within a secure enclave inside Intel SGX. We implemented a feature selection module to identify most discriminative Single Nucleotide Polymorphism (SNP) based on informativeness and an Expectation Maximization (EM)-based Maximum Likelihood estimator to identify the individual admixture. Experimental results based on both simulation and 1000 genome data demonstrated the efficiency and accuracy of the proposed framework. PREMIX ensures a high level of security as all operations on sensitive genomic data are conducted within a secure enclave using SGX. PMID:28269933

  19. Complex Admixture Preceded and Followed the Extinction of Wisent in the Wild

    PubMed Central

    Hartmann, Stefanie; Paijmans, Johanna L. A.; Taron, Ulrike; Xenikoudakis, Georgios; Cahill, James A.; Heintzman, Peter D.; Shapiro, Beth; Baryshnikov, Gennady; Bunevich, Aleksei N.; Crees, Jennifer J.; Dobosz, Roland; Manaserian, Ninna; Okarma, Henryk; Tokarska, Małgorzata; Turvey, Samuel T.; Wójcik, Jan M.; Żyła, Waldemar; Szymura, Jacek M.; Hofreiter, Michael

    2017-01-01

    Retracing complex population processes that precede extreme bottlenecks may be impossible using data from living individuals. The wisent (Bison bonasus), Europe’s largest terrestrial mammal, exemplifies such a population history, having gone extinct in the wild but subsequently restored by captive breeding efforts. Using low coverage genomic data from modern and historical individuals, we investigate population processes occurring before and after this extinction. Analysis of aligned genomes supports the division of wisent into two previously recognized subspecies, but almost half of the genomic alignment contradicts this population history as a result of incomplete lineage sorting and admixture. Admixture between subspecies populations occurred prior to extinction and subsequently during the captive breeding program. Admixture with the Bos cattle lineage is also widespread but results from ancient events rather than recent hybridization with domestics. Our study demonstrates the huge potential of historical genomes for both studying evolutionary histories and for guiding conservation strategies. PMID:28007976

  20. PREMIX: PRivacy-preserving EstiMation of Individual admiXture.

    PubMed

    Chen, Feng; Dow, Michelle; Ding, Sijie; Lu, Yao; Jiang, Xiaoqian; Tang, Hua; Wang, Shuang

    2016-01-01

    In this paper we proposed a framework: PRivacy-preserving EstiMation of Individual admiXture (PREMIX) using Intel software guard extensions (SGX). SGX is a suite of software and hardware architectures to enable efficient and secure computation over confidential data. PREMIX enables multiple sites to securely collaborate on estimating individual admixture within a secure enclave inside Intel SGX. We implemented a feature selection module to identify most discriminative Single Nucleotide Polymorphism (SNP) based on informativeness and an Expectation Maximization (EM)-based Maximum Likelihood estimator to identify the individual admixture. Experimental results based on both simulation and 1000 genome data demonstrated the efficiency and accuracy of the proposed framework. PREMIX ensures a high level of security as all operations on sensitive genomic data are conducted within a secure enclave using SGX.

  1. Gradient layer entrainment in a thermohaline system with mixed layer circulation

    SciTech Connect

    Incropera, F.P.; Lents, C.E.; Viskanta, R.

    1986-11-01

    Entrainment of salt-stratified fluid into a bottom mixed layer is investigated under conditions for which mixing is driven by bottom heating and/or an imposed horizontal flow. Entrainment rate measurements and mixed layer flow visualization suggest that entrainment is strongly influenced by a shear mechanism involving both horizontal and vertical fluid velocity components. Under certain conditions, imposition of the horizontal flow inhibits the buoyancy flow and entrainment rates for combined mixing are less than those for pure buoyant mixing. Attempts to correlate entrainment rates in terms of conventional dimensionless parameters were unsuccessful.

  2. Chemical stability of admixtures combining ziconotide with fentanyl or sufentanil during simulated intrathecal administration.

    PubMed

    Shields, David E; Aclan, Jennifer; Szatkowski, Aaron

    2008-01-01

    Although the U.S. Food and Drug Administration has not approved the combined use of intrathecal medications, practitioners frequently prescribe combination intrathecal therapy for patients who do not experience adequate analgesia with a single intrathecal agent; however, the chemical stability of an analgesic combination may influence the frequency of pump refills necessary to maintain safe and efective pain control. This investigation was performed to evaluate the chemical stability of admixtures containing 25 mcg/mL ziconotide and either 1000 mcg/mL fentanyl citrate or 1000 mcg/mL sufentanil citrate during simulated intrathecal infusion under laboratory conditions at 37 deg C. Admixtures were prepared from commercial ziconotide (25 mcg/mL) and lyophilized powders of the opioid drugs, sparged with nitrogen to remove dissolved oxygen, and stored in implantable intrathecal pumps at 37 deg C. Samples obtained at various intervals over the course of 40 days were assessed for drug concentrations by using high-performance liquid chromatography. The periods of time that the admixtures retained > or = 90% and > or = 80% of the initial concentrations of each drug (i.e., the 90% and 80% stabilities) were determined by using linear regression and 95% confidence intervals. At study end, ziconotide concentrations averaged 87.5% of the initial concentration in the ziconotide/fentanyl admixture and 89.3% of the initial concentration in the ziconotide/sufentanil admixture; opioid concentrations were unchanged. Ziconotide was 90% stable for 26 days and 80% stable for 58 days (extrapolated) when combined with fentanyl; when combined with sufentanil, ziconotide was 90% stable for 33 days and 80% stable for 68 days (extrapolated). The opioids were stable throughout the study. At the concentrations used in this study, ziconotide/fentanyl and ziconotide/sufentanil admixtures were relatively stable.

  3. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture.

    PubMed

    Pool, John E; Corbett-Detig, Russell B; Sugino, Ryuichi P; Stevens, Kristian A; Cardeno, Charis M; Crepeau, Marc W; Duchen, Pablo; Emerson, J J; Saelao, Perot; Begun, David J; Langley, Charles H

    2012-01-01

    Drosophila melanogaster has played a pivotal role in the development of modern population genetics. However, many basic questions regarding the demographic and adaptive history of this species remain unresolved. We report the genome sequencing of 139 wild-derived strains of D. melanogaster, representing 22 population samples from the sub-Saharan ancestral range of this species, along with one European population. Most genomes were sequenced above 25X depth from haploid embryos. Results indicated a pervasive influence of non-African admixture in many African populations, motivating the development and application of a novel admixture detection method. Admixture proportions varied among populations, with greater admixture in urban locations. Admixture levels also varied across the genome, with localized peaks and valleys suggestive of a non-neutral introgression process. Genomes from the same location differed starkly in ancestry, suggesting that isolation mechanisms may exist within African populations. After removing putatively admixed genomic segments, the greatest genetic diversity was observed in southern Africa (e.g. Zambia), while diversity in other populations was largely consistent with a geographic expansion from this potentially ancestral region. The European population showed different levels of diversity reduction on each chromosome arm, and some African populations displayed chromosome arm-specific diversity reductions. Inversions in the European sample were associated with strong elevations in diversity across chromosome arms. Genomic scans were conducted to identify loci that may represent targets of positive selection within an African population, between African populations, and between European and African populations. A disproportionate number of candidate selective sweep regions were located near genes with varied roles in gene regulation. Outliers for Europe-Africa F(ST) were found to be enriched in genomic regions of locally elevated

  4. Magnetized neutron stars with superconducting cores: effect of entrainment

    NASA Astrophysics Data System (ADS)

    Palapanidis, K.; Stergioulas, N.; Lander, S. K.

    2015-09-01

    We construct equilibrium configurations of magnetized, two-fluid neutron stars using an iterative numerical method. Working in Newtonian framework we assume that the neutron star has two regions: the core, which is modelled as a two-component fluid consisting of type-II superconducting protons and superfluid neutrons, and the crust, a region composed of normal matter. Taking a new step towards more complete equilibrium models, we include the effect of entrainment, which implies that a magnetic force acts on neutrons, too. We consider purely poloidal field cases and present improvements to an earlier numerical scheme for solving equilibrium equations, by introducing new convergence criteria. We find that entrainment results in qualitative differences in the structure of field lines along the magnetic axis.

  5. Improvements and applications of entrainment control for nonlinear dynamical systems.

    PubMed

    Liu, Fang; Song, Qiang; Cao, Jinde

    2008-12-01

    This paper improves the existing entrainment control approaches and develops unified schemes to chaos control and generalized (lag, anticipated, and complete) synchronization of nonlinear dynamical systems. By introducing impulsive effects to the open-loop control method, we completely remove its restrictions on goal dynamics and initial conditions, and derive a sufficient condition to estimate the upper bound of impulsive intervals to ensure the global asymptotic stability. We then propose two effective ways to implement the entrainment strategy which combine open-loop and closed-loop control, and we prove that the feedback gains can be chosen according to a lower bound or be tuned with an adaptive control law. Numerical examples are given to verify the theoretical results and to illustrate their applications.

  6. Synchrony and entrainment properties of robust circadian oscillators

    PubMed Central

    Bagheri, Neda; Taylor, Stephanie R.; Meeker, Kirsten; Petzold, Linda R.; Doyle, Francis J.

    2008-01-01

    Systems theoretic tools (i.e. mathematical modelling, control, and feedback design) advance the understanding of robust performance in complex biological networks. We highlight phase entrainment as a key performance measure used to investigate dynamics of a single deterministic circadian oscillator for the purpose of generating insight into the behaviour of a population of (synchronized) oscillators. More specifically, the analysis of phase characteristics may facilitate the identification of appropriate coupling mechanisms for the ensemble of noisy (stochastic) circadian clocks. Phase also serves as a critical control objective to correct mismatch between the biological clock and its environment. Thus, we introduce methods of investigating synchrony and entrainment in both stochastic and deterministic frameworks, and as a property of a single oscillator or population of coupled oscillators. PMID:18426774

  7. An entrainment model for the turbulent jet in a coflow

    NASA Astrophysics Data System (ADS)

    Enjalbert, Nicolas; Galley, David; Pierrot, Laurent

    2009-09-01

    The entrainment hypothesis was introduced by G.I. Taylor to describe one-dimensionally the development of turbulent jets issuing into a stagnant or coflowing environment. It relates the mass flow rate of surrounding fluid entrained into the jet to the characteristic velocity difference between the jet and the coflow. A model based on this hypothesis along with axial velocity assumed to follow a realistic Gaussian distribution is presented. It possesses an implicit analytical solution, and its results are compared and shown to be fully equivalent to previously published models that are rather based on a spreading hypothesis. All of them are found to be in agreement with experimental results, on a wide range of downstream positions and for various coflow intensities. To cite this article: N. Enjalbert et al., C. R. Mecanique 337 (2009).

  8. Entrainment and thrust augmentation in pulsatile ejector flows

    NASA Technical Reports Server (NTRS)

    Sarohia, V.; Bernal, L.; Bui, T.

    1981-01-01

    This study comprised direct thrust measurements, flow visualization by use of a spark shadowgraph technique, and mean and fluctuating velocity measurements with a pitot tube and linearized constant temperature hot-wire anemometry respectively. A gain in thrust of as much as 10 to 15% was observed for the pulsatile ejector flow as compared to the steady flow configuration. From the velocity profile measurements, it is concluded that this enhanced augmentation for pulsatile flow as compared to a nonpulsatile one was accomplished by a corresponding increased entrainment by the primary jet flow. It is also concluded that the augmentation and total entrainment by a constant area ejector critically depends upon the inlet geometry of the ejector. Experiments were performed to evaluate the influence of primary jet to ejector area ratio, ejector length, and presence of a diffuser on pulsatile ejector performance.

  9. Effects of drying conditions, admixtures and specimen size on shrinkage strains

    SciTech Connect

    Al-Saleh, Saleh A. . E-mail: alsaleh@dr.com; Al-Zaid, Rajeh Z.

    2006-10-15

    The paper presents the results of an experimental investigation on the effects of drying conditions, specimen size and presence of plasticizing admixture on the development of shrinkage strains. The measurements are taken in a harsh (50 deg. C and 5% R.H.) and a moderate environment (28 deg. C and 50% R.H.). The results include strain development at various levels of cross sections of concrete prisms. The drying conditions are found to be the dominant parameter affecting the shrinkage strain development particularly in specimens of smaller sizes. The effect of plasticizing admixture on shrinkage strains is negligible.

  10. Modeling of Neutral Entrainment in an FRC Thruster

    DTIC Science & Technology

    2012-07-01

    helium . The reaction rates as function of temperature are shown in Fig. 1 (left). Note that in addition to the electron impact ionization (denoted EII in...SCX N2 EII N2 recombination FIGURE 1. Different reaction rates in helium (left) and molecular nitrogen (right). The electron impact ionization rates...that the entrainment process in a helium -based FRC thruster may be expected to be fairly efficient, especially for lower plasma temperatures. Note

  11. Entrainment of a Spatially Extended Nonlinear Structure under Selective Forcing

    NASA Astrophysics Data System (ADS)

    Henriot, Michel; Burguete, Javier; Ribotta, Roland

    2003-09-01

    The response of a nonlinear state to a variable forcing periodic in space is studied in an extended dynamical system consisting of a liquid crystal layer driven to convection. Both the statics and the dynamics of the entrainment and the locking effects are analyzed. The dynamics of the evolution are controlled by topological singularities that allow a diffusion of the phase. The mechanisms involved are related to the role of the defects in systems undergoing spontaneous symmetry breakings.

  12. Rhythmic TMS Causes Local Entrainment of Natural Oscillatory Signatures

    PubMed Central

    Thut, Gregor; Veniero, Domenica; Romei, Vincenzo; Miniussi, Carlo; Schyns, Philippe; Gross, Joachim

    2011-01-01

    Summary Background Neuronal elements underlying perception, cognition, and action exhibit distinct oscillatory phenomena, measured in humans by electro- or magnetoencephalography (EEG/MEG). So far, the correlative or causal nature of the link between brain oscillations and functions has remained elusive. A compelling demonstration of causality would primarily generate oscillatory signatures that are known to correlate with particular cognitive functions and then assess the behavioral consequences. Here, we provide the first direct evidence for causal entrainment of brain oscillations by transcranial magnetic stimulation (TMS) using concurrent EEG. Results We used rhythmic TMS bursts to directly interact with an MEG-identified parietal α-oscillator, activated by attention and linked to perception. With TMS bursts tuned to its preferred α-frequency (α-TMS), we confirmed the three main predictions of entrainment of a natural oscillator: (1) that α-oscillations are induced during α-TMS (reproducing an oscillatory signature of the stimulated parietal cortex), (2) that there is progressive enhancement of this α-activity (synchronizing the targeted, α-generator to the α-TMS train), and (3) that this depends on the pre-TMS phase of the background α-rhythm (entrainment of natural, ongoing α-oscillations). Control conditions testing different TMS burst profiles and TMS-EEG in a phantom head confirmed specificity of α-boosting to the case of synchronization between TMS train and neural oscillator. Conclusions The periodic electromagnetic force that is generated during rhythmic TMS can cause local entrainment of natural brain oscillations, emulating oscillatory signatures activated by cognitive tasks. This reveals a new mechanism of online TMS action on brain activity and can account for frequency-specific behavioral TMS effects at the level of biologically relevant rhythms. PMID:21723129

  13. Persistence, entrainment, and function of circadian rhythms in polar vertebrates.

    PubMed

    Williams, Cory T; Barnes, Brian M; Buck, C Loren

    2015-03-01

    Polar organisms must cope with an environment that periodically lacks the strongest time-giver, or zeitgeber, of circadian organization-robust, cyclical oscillations between light and darkness. We review the factors influencing the persistence of circadian rhythms in polar vertebrates when the light-dark cycle is absent, the likely mechanisms of entrainment that allow some polar vertebrates to remain synchronized with geophysical time, and the adaptive function of maintaining circadian rhythms in such environments.

  14. Entrainment of cell division in phytoplankton with dynamic energy budgets

    NASA Astrophysics Data System (ADS)

    Muller, Erik B.; Ananthasubramaniam, Bharath; Klanjšček, Tin; Nisbet, Roger M.

    2011-11-01

    We explore the entrainment behavior of cell division in phytoplankton in the context of Dynamic Energy Budget (DEB) theory. In particular, we explore the range of DEB and environmental parameter values within which a cell divides at regular intervals in a periodic light environment with abundant nutrients and investigate the impact of parameter values on the phase of cell division. We consider three types of cells that differ in the evolution of surface area to volume ratio during the cell cycle: cells with a constant shape (isomorphs), cells with a constant surface area (V0-morphs) and cells with a constant surface area to volume ratio (V1-morphs), the latter being the default choice in studies on the population dynamics of unicellular organisms because of its desirable mathematical implications. Only in isomorphs and V0-morphs, however, cell division can be entrained to a periodic light. Regular cell division in V1 is purely coincidental, as it depends on exact choices for parameter values. We attribute this to the fact that V1-morphs lack the negative feedback of size on the dynamics of reserves in V0-morphs and isomorphs. Because entrained isomorphs and V0-morphs divide during the dark hours in our simulations, these two shapes can represent the division behavior of phytoplankton species that complete the cell cycle during the night, such as dinoflagellates and coccolithophores. A description of the division behavior of species completing the cell cycle during the day, such as silicon dependent diatoms and cyanobacteria, requires a more complex model than used in this paper. Furthermore, we explore the robustness of our findings by randomizing model parameters and introducing unevenness in biomass separation between daughter cells during cell division. We conclude that especially the entrainment in V0-morphs is relatively insensitive to perturbations.

  15. Entrainment of coarse grains using a discrete particle model

    SciTech Connect

    Valyrakis, Manousos; Arnold, Roger B. Jr.

    2014-10-06

    Conventional bedload transport models and incipient motion theories relying on a time-averaged boundary shear stress are incapable of accounting for the effects of fluctuating near-bed velocity in turbulent flow and are therefore prone to significant errors. Impulse, the product of an instantaneous force magnitude and its duration, has been recently proposed as an appropriate criterion for quantifying the effects of flow turbulence in removing coarse grains from the bed surface. Here, a discrete particle model (DPM) is used to examine the effects of impulse, representing a single idealized turbulent event, on particle entrainment. The results are classified according to the degree of grain movement into the following categories: motion prior to entrainment, initial dislodgement, and energetic displacement. The results indicate that in all three cases the degree of particle motion depends on both the force magnitude and the duration of its application and suggest that the effects of turbulence must be adequately accounted for in order to develop a more accurate method of determining incipient motion. DPM is capable of simulating the dynamics of grain entrainment and is an appropriate tool for further study of the fundamental mechanisms of sediment transport.

  16. Entrainment and stimulated emission of ultrasonic piezoelectric auto-oscillators.

    PubMed

    Weaver, Richard L; Lobkis, Oleg I; Yamilov, Alexey

    2007-12-01

    Theoretical modeling and laboratory tests are conducted for nonlinear auto-oscillating piezoelectric ultrasonic devices coupled to reverberant elastic bodies. The devices are shown to exhibit behavior familiar from the theory of coupled auto-oscillators. In particular, these spontaneously emitting devices adjust their limit-cycle frequency to the spectrum of the body. It is further shown that the auto-oscillations can be entrained by an applied field; an incident wave at a frequency close to the frequency of the natural limit cycle entrains the oscillator. Special attention is paid to the phase of entrainment. Depending on details, the phase is such that the oscillator can be in a state of stimulated emission: the incident field amplifies the ultrasonic power emitted by the oscillator. These behaviors are essential to eventual design of an ultrasonic system that would consist of a number of such devices all synchronized to their mutual field, a system that would be an analog to a laser. A prototype uaser is constructed.

  17. microRNA modulation of circadian clock period and entrainment

    PubMed Central

    Cheng, Hai-Ying M.; Papp, Joseph W.; Varlamova, Olga; Dziema, Heather; Russell, Brandon; Curfman, John P.; Nakazawa, Takanobu; Shimizu, Kimiko; Okamura, Hitoshi; Impey, Soren; Obrietan, Karl

    2007-01-01

    microRNAs (miRNAs) are a class of small, non-coding, RNAs that regulate the stability or translation of mRNA transcripts. Although recent work has implicated miRNAs in development and in disease, the expression and function of miRNAs in the adult mammalian nervous system has not been extensively characterized. Here, we examine the role of two brain-specific miRNAs, miR-219 and miR-132, in modulating the circadian clock located in the suprachiasmatic nucleus. miR-219 is a target of the CLOCK/BMAL1 complex, exhibits robust circadian rhythms of expression and the in vivo knockdown of miR-219 lengthens the circadian period. miR-132 is induced by photic entrainment cues via a MAPK/CREB-dependent mechanism, modulates clock gene expression, and attenuates the entraining effects of light. Collectively, these data reveal miRNAs as clock- and light-regulated genes and provide a mechanistic examination of their roles as effectors of pacemaker activity and entrainment. PMID:17553428

  18. Robust Entrainment of Circadian Oscillators Requires Specific Phase Response Curves

    PubMed Central

    Pfeuty, Benjamin; Thommen, Quentin; Lefranc, Marc

    2011-01-01

    The circadian clocks keeping time in many living organisms rely on self-sustained biochemical oscillations entrained by external cues, such as light, to the 24-h cycle induced by Earth's rotation. However, environmental cues are unreliable due to the variability of habitats, weather conditions, or cue-sensing mechanisms among individuals. A tempting hypothesis is that circadian clocks have evolved so as to be robust to fluctuations in the signal that entrains them. To support this hypothesis, we analyze the synchronization behavior of weakly and periodically forced oscillators in terms of their phase response curve (PRC), which measures phase changes induced by a perturbation applied at different times of the cycle. We establish a general relationship between the robustness of key entrainment properties, such as stability and oscillator phase, on the one hand, and the shape of the PRC as characterized by a specific curvature or the existence of a dead zone, on the other hand. The criteria obtained are applied to computational models of circadian clocks and account for the disparate robustness properties of various forcing schemes. Finally, the analysis of PRCs measured experimentally in several organisms strongly suggests a case of convergent evolution toward an optimal strategy for maintaining a clock that is accurate and robust to environmental fluctuations. PMID:21641300

  19. CREB influences timing and entrainment of the SCN circadian clock.

    PubMed

    Lee, Boyoung; Li, Aiqing; Hansen, Katelin F; Cao, Ruifeng; Yoon, Jae Hwa; Obrietan, Karl

    2010-12-01

    The transcriptional feedback circuit, which is at the core of the suprachiasmatic nucleus (SCN) circadian (i.e., 24 h) clock, is tightly coupled to both external entrainment cues, such as light, as well as rhythmic cues that arise on a system-wide level within the SCN. One potential signaling pathway by which these cues are conveyed to the molecular clock is the CREB/CRE transcriptional cascade. In this study, we employed a tetracycline-inducible CREB repressor mouse strain, in which approximately 60% of the SCN neurons express the transgene, to test CREB functionality in the clock and its effects on overt rhythmicity. We show that attenuated CREB signaling in the SCN led to a significant reduction in light-evoked clock entrainment. An examination of circadian timing revealed that CREB repressor mice exhibited normal free-running rhythms in the absence of external lighting cues. However, under conditions of constant light, which typically leads to a lengthening of the circadian period, CREB repressor mice exhibited a dramatic arrhythmic phenotype, which could be reversed with doxycycline. At a cellular level, the repression of CREB led to a significant reduction in both the expression of the circadian clock proteins PERIOD1 and PERIOD2 and the clock output hormones AVP and VIP. Together, these data support the idea that the CRE transcriptional pathway orchestrates transcriptional events that are essential for both the maintenance of SCN timing and light entrainment of the circadian clock.

  20. Rhythm as a Coordinating Device: Entrainment With Disordered Speech

    PubMed Central

    Borrie, Stephanie A.; Liss, Julie M.

    2014-01-01

    Purpose The rhythmic entrainment (coordination) of behavior during human interaction is a powerful phenomenon, considered essential for successful communication, supporting social and emotional connection, and facilitating sense-making and information exchange. Disruption in entrainment likely occurs in conversations involving those with speech and language impairment, but its contribution to communication disorders has not been defined. As a first step to exploring this phenomenon in clinical populations, the present investigation examined the influence of disordered speech on the speech production properties of healthy interactants. Method Twenty-nine neurologically healthy interactants participated in a quasi-conversational paradigm, in which they read sentences (response) in response to hearing prerecorded sentences (exposure) from speakers with dysarthria (n = 4) and healthy controls (n = 4). Recordings of read sentences prior to the task were also collected (habitual). Results Findings revealed that interactants modified their speaking rate and pitch variation to align more closely with the disordered speech. Production shifts in these rhythmic properties, however, remained significantly different from corresponding properties in dysarthric speech. Conclusion Entrainment offers a new avenue for exploring speech and language impairment, addressing a communication process not currently explained by existing frameworks. This article offers direction for advancing this line of inquiry. PMID:24686410

  1. Stratocumulus Precipitation and Entrainment Experiment (SPEE) Field Campaign Report

    SciTech Connect

    Albrecht, Bruce; Ghate, Virendra; CADeddu, Maria

    2016-06-01

    The scientific focus of this project was to examine precipitation and entrainment processes in marine stratocumulus clouds. The entrainment studies focused on characterizing cloud turbulence at cloud top using Doppler cloud radar observations. The precipitation studies focused on characterizing the precipitation and the macroscopic properties (cloud thickness, and liquid water path) of the clouds. This project will contribute to the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Climate Research Facility’s overall objective of providing the remote-sensing observations needed to improve the representation of key cloud processes in climate models. It will be of direct relevance to the components of ARM dealing with entrainment and precipitation processes in stratiform clouds. Further, the radar observing techniques that will be used in this study were developed using ARM Southern Great Plains (SGP) facility observations under Atmospheric System Research (ASR) support. The observing systems operating automatously from a site located just north of the Center for Interdisciplinary Remotely-Piloted Aircraft Studies (CIRPAS) aircraft hangar in Marina, California during the period of 1 May to 4 November 2015 included: 1. Microwave radiometer: ARM Microwave Radiometer, 3-Channel (MWR3C) with channels centered at 23.834, 30, and 89 GHz; supported by Dr. Maria Cadeddu. 2. Cloud Radar: CIRPAS 95 GHz Frequency Modulated Continuous Wave (FMCW) Cloud Radar (Centroid Frequency Chirp Rate [CFCR]); operations overseen by Drs. Ghate and Albrecht. 3. Ceilometer: Vaisala CK-14; operations overseen by Drs. Ghate and Albrecht.

  2. Lack of eyeblink entrainments in autism spectrum disorders.

    PubMed

    Nakano, Tamami; Kato, Nobumasa; Kitazawa, Shigeru

    2011-07-01

    Interpersonal synchrony is the temporal coordination of movements between individuals during social interactions. For example, it has been shown that listeners synchronize their eyeblinks to a speaker's eyeblinks, especially at breakpoints of speech, when viewing a close-up video clip of the speaker's face. We hypothesized that this interpersonal synchronous behavior would not be observed in individuals with autism spectrum disorders (ASD), which are characterized by impaired social communication. To test this hypothesis, we examined eyeblink entrainments in adults with ASD. As we reported previously, the eyeblinks of adults without ASD were significantly synchronized with the speaker's eyeblinks at pauses in his speech when they viewed the speaker's entire face. However, the significant eyeblink synchronization disappeared when adults without ASD viewed only the speaker's eyes or mouth, suggesting that information from the whole face, including information from both the eyes and the mouth, was necessary for eyeblink entrainment. By contrast, the ASD participants did not show any eyeblink synchronization with the speaker, even when viewing the speaker's eyes and mouth simultaneously. The lack of eyeblink entrainment to the speaker in individuals with ASD suggests that they are not able to temporally attune themselves to others' behaviors. The deficits in temporal coordination may impair effective social communication with others.

  3. An Experimental Study of Plunging Liquid Jet Induced Air Carryunder and Dispersion

    DTIC Science & Technology

    1992-03-31

    Plunging Liquid Jet - The Air Entrainment Process". It is intended that this paper will be finalized and...the fifth quarterly report for ONR grant N00014-91-J-1271, "An Experimental Study of Plunging Liquid Jet Induced Air Carryunder and Dispersion" (Lahey...Drew - CoPI). rhis report period has been concerned with performing an analysis of the air entrainment process associated with a plunging liquid

  4. Entrainment of granular substrate by pyroclastic flows: an experimental study and its implications for flow dynamics

    NASA Astrophysics Data System (ADS)

    Roche, O.; Niño, Y.; Mangeney, A.; Brand, B. D.; Valentine, G. A.

    2012-12-01

    Pyroclastic flows deposits may contain lithics entrained from an unconsolidated granular substrate on which the flows emplaced. In order to address this issue, analog experiments on dense gas-particle flows propagating on a horizontal granular layer were carried out to elucidate the entrainment mechanisms and to infer the dynamics of pyroclastic flows. The experimental flows were generated from the release of gas-fluidized columns of fine (80 μm) particles in a horizontal channel whose base was made of an unconsolidated granular layer. The flows consisted of a fluidized air-particles mixture, and the small hydraulic permeability of the material allowed for long-lived high interstitial pore fluid pressure during emplacement. Basal pore pressure measurements in preliminary experiments involving a rigid substrate revealed that the sliding head of the flows generated a dynamic underpressure (relative to atmosphere) proportional to the square of the front velocity. As such underpressure at the flow base was likely to promote an upward pressure gradient that could cause uplift of particles of a granular substrate, we did a theoretical analysis in order to determine the critical underpressure and the corresponding flow velocity (Uc) at which uplift could occur. This analysis showed that Uc~(dρpg/Cρ)1/2 for spherical particles, where d and ρp are the particle diameter and density, respectively, C is an empirical constant, and is ρ is the bulk flow density. It was validated with experiments on flows propagating on 3 cm-thick substrates of steel beads of diameter d=1.6 mm. The beads were first dragged horizontally individually due to basal shear, and onset of uplift did occur at Uc~0.9 m/s. The beads uplifted were incorporated within the flow base, to a height that increased up to 6-8 mm at flow velocities up to 2.5-3 m/s, and were entrained over distances of several tens of cm representing a significant part of the flow runout. The flow deposits hence had a well

  5. Landslide boost from entrainment of erodible material along the slope

    NASA Astrophysics Data System (ADS)

    Farin, M.; Mangeney, A.; Roche, O.; Ionescu, I. R.; Hungr, O.

    2012-04-01

    Landslides, debris flows, pyroclastic flows and avalanches are natural hazards that threaten life and property in mountainous, volcanic, coastal and seismically-active areas. The granular mass tends to accelerate as gravity pulls it down the slope and will decelerate on more gentle slopes, where frictional forces that dissipate energy can overcome the driving forces. The entrainment of underlying sediments or debris into the gravitational granular flows is suspected to be critical to their dynamics, but direct measurement of material entrainment in natural flows is very difficult. Nevertheless, qualitative and quantitative field observations suggest that material entrainment can either increase or decrease flow velocity and deposit extent, depending on the geological setting and the type of gravitational flow. We present laboratory experiments of granular column collapse over an inclined plane covered by an erodible bed, designed to mimic erosion processes of natural flows traveling over deposits built up by earlier events. The controlling parameters are the inclination of the plane, the aspect ratio of the granular column released and the thickness of the erodible layer. The avalanche excavates the erodible layer immediately at the flow front, behind which waves traveling downstream help removing grains from the erodible bed are observed. We show that erosion processes increases the flow mobility (i. e. runout) by up to 25% over slopes with inclination close to the repose angle of the grains. Erosion efficiency is shown to strongly depend on the slope and on the nature of the erodible bed (i. e. degree of compaction): erosion effects are smaller as the compaction of the erodible granular bed increases. The excavation depth first increases and stabilizes to a critical value, and finally decreases when increasing the thickness of the erodible bed. We demonstrate that the increase of mass of the flowing grains caused by entrainment of the erodible layer is not enough

  6. Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome.

    PubMed

    Goldberg, Amy; Rosenberg, Noah A

    2015-09-01

    Sex-biased demography, in which parameters governing migration and population size differ between females and males, has been studied through comparisons of X chromosomes, which are inherited sex-specifically, and autosomes, which are not. A common form of sex bias in humans is sex-biased admixture, in which at least one of the source populations differs in its proportions of females and males contributing to an admixed population. Studies of sex-biased admixture often examine the mean ancestry for markers on the X chromosome in relation to the autosomes. A simple framework noting that in a population with equally many females and males, two-thirds of X chromosomes appear in females, suggests that the mean X-chromosomal admixture fraction is a linear combination of female and male admixture parameters, with coefficients 2/3 and 1/3, respectively. Extending a mechanistic admixture model to accommodate the X chromosome, we demonstrate that this prediction is not generally true in admixture models, although it holds in the limit for an admixture process occurring as a single event. For a model with constant ongoing admixture, we determine the mean X-chromosomal admixture, comparing admixture on female and male X chromosomes to corresponding autosomal values. Surprisingly, in reanalyzing African-American genetic data to estimate sex-specific contributions from African and European sources, we find that the range of contributions compatible with the excess African ancestry on the X chromosome compared to autosomes has a wide spread, permitting scenarios either without male-biased contributions from Europe or without female-biased contributions from Africa.

  7. Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome

    PubMed Central

    Goldberg, Amy; Rosenberg, Noah A.

    2015-01-01

    Sex-biased demography, in which parameters governing migration and population size differ between females and males, has been studied through comparisons of X chromosomes, which are inherited sex-specifically, and autosomes, which are not. A common form of sex bias in humans is sex-biased admixture, in which at least one of the source populations differs in its proportions of females and males contributing to an admixed population. Studies of sex-biased admixture often examine the mean ancestry for markers on the X chromosome in relation to the autosomes. A simple framework noting that in a population with equally many females and males, two-thirds of X chromosomes appear in females, suggests that the mean X-chromosomal admixture fraction is a linear combination of female and male admixture parameters, with coefficients 2/3 and 1/3, respectively. Extending a mechanistic admixture model to accommodate the X chromosome, we demonstrate that this prediction is not generally true in admixture models, although it holds in the limit for an admixture process occurring as a single event. For a model with constant ongoing admixture, we determine the mean X-chromosomal admixture, comparing admixture on female and male X chromosomes to corresponding autosomal values. Surprisingly, in reanalyzing African-American genetic data to estimate sex-specific contributions from African and European sources, we find that the range of contributions compatible with the excess African ancestry on the X chromosome compared to autosomes has a wide spread, permitting scenarios either without male-biased contributions from Europe or without female-biased contributions from Africa. PMID:26209245

  8. Chemical Stability of Admixtures Combining Ziconotide with Morphine or Hydromorphone During Simul ated Intrathecal Administration.

    PubMed

    Shields, David; Montenegro, Rick; Ragusa, Matthew

    2005-10-01

    Objective.  To determine the stability of admixtures combining ziconotide with morphine or hydromorphone under simulated intrathecal infusions. Materials and Methods.  Admixtures of ziconotide (25 µg/mL) with morphine or hydromorphone (both at 35 mg/mL) were stored in Medtronic SynchroMed® II pumps at 37°C, and in control vials at 37°C and 5°C. Drug concentrations were determined using high-performance liquid chromatography. Results.  The ziconotide pump concentration with morphine declined to 79% of initial in 17 days, and to 88% of initial after 25 days with hydromorphone. Ziconotide concentrations in control vials stored at 37°C displayed similar rates of decay, but vials stored at 5°C exhibited no ziconotide loss. A statistical evaluation of the two combinations shows ziconotide-hydromorphone retaining 80% stability for 40 days (extrapolated), compared to 15 days for ziconotide-morphine. Morphine and hydromorphone were stable in the presence of ziconotide under all conditions. Conclusions.  Ziconotide-hydromorphone admixtures were more stable than ziconotide-morphine admixtures.

  9. Extension of the operating period of an UV Cu II laser by admixture of argon

    SciTech Connect

    Auschwitz, B.; Eichler, H.J.; Wittwer, W.

    1980-05-15

    The operating period of an UV Cu II laser (discharge current >25 A, duty cycle 6:1) is extended from minutes to over one hour by an admixture of 0.1% argon to the neon pump gas. In addition, a new laser line at 270.1 nm has been observed.

  10. What Causes Birth Order-Intelligence Patterns? The Admixture Hypothesis, Revived.

    ERIC Educational Resources Information Center

    Rodgers, Joseph Lee

    2001-01-01

    Describes why birth order interests both parents and researchers, discussing what really causes apparent birth order effects on intelligence, examining problems with using cross-sectional intelligence data, and noting how to move beyond cross-sectional inferences. Explains the admixture hypothesis, which finds that family size is much more…

  11. Phenomenological model of sintering of oxide nuclear fuel with doping admixtures

    SciTech Connect

    Baranov, V. G.; Devyatko, Yu. N.; Tenishev, A. V.; Khomyakov, O. V.

    2015-12-15

    It is shown that a change in the linear dimension of compacted UO{sub 2} in the sintering process is associated with its plastic yielding under the action of the forces of residual stress and capillary forces. From the curves of sintering of a fuel with doping admixtures in various gaseous media, its rate of creep is reduced.

  12. Admixture Mapping Identifies a Quantitative Trait Locus Associated with FEV1/FVC in the COPDGene Study

    PubMed Central

    Parker, Margaret M.; Foreman, Marilyn G.; Abel, Haley J.; Mathias, Rasika A.; Hetmanksi, Jacqueline B.; Crapo, James D.; Silverman, Edwin K.; Beaty, Terri H.

    2014-01-01

    African Americans are admixed with genetic contributions from European and African ancestral populations. Admixture mapping leverages this information to map genes influencing differential disease risk across populations. We performed admixture and association mapping in 3300 African American current or former smokers from the COPDGene Study. We analyzed estimated local ancestry and SNP genotype information to identify regions associated with FEV1/FVC, the ratio of forced expiratory volume in one second to forced vital capacity, measured by spirometry performed after bronchodilator administration. Global African ancestry inversely associated with FEV1/FVC (p = 0.035). Genome-wide admixture analysis, controlling for age, gender, body mass index, current smoking status, pack-years smoked, and four principal components summarizing the genetic background of African Americans in the COPDGene Study, identified a region on chromosome 12q14.1 associated with FEV1/FVC (p = 2.1 × 10-6) when regressed on local ancestry. Allelic association in this region of chromosome 12 identified an intronic variant in FAM19A2 (rs348644) as associated with FEV1/FVC (p=1.76 × 10-6). By combining admixture and association mapping, a marker on chromosome 12q14.1 was identified as being associated with reduced FEV1/FVC ratio among African-Americans in the COPDGene Study. PMID:25112515

  13. Efficient moment-based inference of admixture parameters and sources of gene flow.

    PubMed

    Lipson, Mark; Loh, Po-Ru; Levin, Alex; Reich, David; Patterson, Nick; Berger, Bonnie

    2013-08-01

    The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still a challenge, however, to infer reliable parameter values for complicated models involving many populations. Here, we present MixMapper, an efficient, interactive method for constructing phylogenetic trees including admixture events using single nucleotide polymorphism (SNP) genotype data. MixMapper implements a novel two-phase approach to admixture inference using moment statistics, first building an unadmixed scaffold tree and then adding admixed populations by solving systems of equations that express allele frequency divergences in terms of mixture parameters. Importantly, all features of the model, including topology, sources of gene flow, branch lengths, and mixture proportions, are optimized automatically from the data and include estimates of statistical uncertainty. MixMapper also uses a new method to express branch lengths in easily interpretable drift units. We apply MixMapper to recently published data for Human Genome Diversity Cell Line Panel individuals genotyped on a SNP array designed especially for use in population genetics studies, obtaining confident results for 30 populations, 20 of them admixed. Notably, we confirm a signal of ancient admixture in European populations-including previously undetected admixture in Sardinians and Basques-involving a proportion of 20-40% ancient northern Eurasian ancestry.

  14. Recycling of tailings from Korea Molybdenum Corporation as admixture for high-fluidity concrete.

    PubMed

    Jung, Moon Young; Choi, Yun Wang; Jeong, Jae Gwon

    2011-01-01

    The main objective of this study is to develop an eco-friendly and a large recycling technique of flotation Tailings from korea (TK) from metal mines as construction materials such as admixtures for high-fluidity concrete (HFC). TK used in this study was obtained from the Korea Molybdenum Corporation in operation. TK was used as the alternative material to adjust flowability and viscosity of HFC in the form of powder agent which enables adjustment of concrete compressive strength. In this study, we have performed concrete rheological tests and concrete flowability tests to obtain the quality characteristics of TK for using as the admixture in producing HFC. The results indicated that the adequate mix ratio of cement to TK should be 8:2 (vol%). It is more effective to use the TK as admixture to control flowability, viscosity and strength of HFC than the normal concrete. It was found that TK could be recycled construction materials in bulk such as admixture for HFC, in terms of the economic and eco-friendly aspects.

  15. Audience entrainment during live contemporary dance performance: physiological and cognitive measures.

    PubMed

    Bachrach, Asaf; Fontbonne, Yann; Joufflineau, Coline; Ulloa, José Luis

    2015-01-01

    Perceiving and synchronizing to a piece of dance is a remarkable skill in humans. Research in this area is very recent and has been focused mainly on entrainment produced by regular rhythms. Here, we investigated entrainment effects on spectators perceiving a non-rhythmic and extremely slow performance issued from contemporary dance. More specifically, we studied the relationship between subjective experience and entrainment produced by perceiving this type of performance. We defined two types of entrainment. Physiological entrainment corresponded to cardiovascular and respiratory coordinated activities. Cognitive entrainment was evaluated through cognitive tasks that quantified time distortion. These effects were thought to reflect attunement of a participant' internal temporal clock to the particularly slow pace of the danced movement. Each participant' subjective experience-in the form of responses to questionnaires-were collected and correlated with cognitive and physiological entrainment. We observe: (a) a positive relationship between psychological entrainment and attention to breathing (their own one or that of dancers); and (b) a positive relationship between cognitive entrainment (reflected as an under-estimation of time following the performance) and attention to their own breathing, and attention to the muscles' dancers. Overall, our results suggest a close relationship between attention to breathing and entrainment. This proof-of-concept pilot study was intended to prove the feasibility of a quantitative situated paradigm. This research is inscribed in a large-scale interdisciplinary project of dance spectating (labodanse.org).

  16. Audience entrainment during live contemporary dance performance: physiological and cognitive measures

    PubMed Central

    Bachrach, Asaf; Fontbonne, Yann; Joufflineau, Coline; Ulloa, José Luis

    2015-01-01

    Perceiving and synchronizing to a piece of dance is a remarkable skill in humans. Research in this area is very recent and has been focused mainly on entrainment produced by regular rhythms. Here, we investigated entrainment effects on spectators perceiving a non-rhythmic and extremely slow performance issued from contemporary dance. More specifically, we studied the relationship between subjective experience and entrainment produced by perceiving this type of performance. We defined two types of entrainment. Physiological entrainment corresponded to cardiovascular and respiratory coordinated activities. Cognitive entrainment was evaluated through cognitive tasks that quantified time distortion. These effects were thought to reflect attunement of a participant’ internal temporal clock to the particularly slow pace of the danced movement. Each participant’ subjective experience—in the form of responses to questionnaires—were collected and correlated with cognitive and physiological entrainment. We observe: (a) a positive relationship between psychological entrainment and attention to breathing (their own one or that of dancers); and (b) a positive relationship between cognitive entrainment (reflected as an under-estimation of time following the performance) and attention to their own breathing, and attention to the muscles’ dancers. Overall, our results suggest a close relationship between attention to breathing and entrainment. This proof-of-concept pilot study was intended to prove the feasibility of a quantitative situated paradigm. This research is inscribed in a large-scale interdisciplinary project of dance spectating (labodanse.org). PMID:25999831

  17. Experimental and theoretical study of entrainment in volcanic line plumes produced by fissure eruptions

    NASA Astrophysics Data System (ADS)

    Paillat, S.; Kaminski, E. C.

    2013-12-01

    Basaltic fissure eruptions can produce turbulent line plumes injecting gas and particles in the atmosphere. The dynamic of these line plumes is controlled by the efficiency of entrainment as quantified by the so-called entrainment coefficient α. There are only scarce experimental constraints on α in planar jets and plumes. Whereas a constant value of the entrainment coefficient is used in models, data from the literature show a variation of α in pure planar jets. Only a few data are available for plumes. In order to better constrain the entrainment coefficient, we propose a theoretical expression of the entrainment coefficient α, as a function of buoyancy and turbulent structure. The model is validated first, using data from the literature and new experiments in pure jets and plumes. We show that the entrainment coefficient reaches a constant value at large distances from the source and high Reynolds number in pure jets. Positive buoyancy enhances the entrainment in pure plumes where α is about two times larger. The theoretical expression of the entrainment coefficient is then used to study the effect of variable entrainment on the dynamics of volcanic line plumes produced above an eruptive fissure at different scales, ranging from small Hawaiian fountains to basaltic Plinian eruptions (e.g. 1783 Laki eruption) and flood basalts. Both the stability of the eruptive column and the maximum height it reaches in the atmosphere are affected by variable entrainment.

  18. Doing Duo - a case study of entrainment in William Forsythe's choreography "Duo".

    PubMed

    Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E

    2014-01-01

    Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe's choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models.

  19. Comprehensive modeling and numerical investigation of entrained-flow coal gasifiers

    NASA Astrophysics Data System (ADS)

    Silaen, Armin Karen

    Numerical simulations of coal gasification process inside a generic 2-stage entrained-flow gasifier are carried out using the commercial CFD solver ANSYS/FLUENT. The 3-D Navier-Stokes equations and eight species transport equations are solved with three heterogeneous global reactions, three homogeneous reactions, and one thermal cracking equation of volatiles. Finite rates are used for the heterogeneous solid-gas reactions. Both finite rate and eddy-breakup combustion models are calculated for each homogeneous gas-gas reaction, and the smaller of the two rates is used. Lagrangian-Eulerian method is employed. The Eulerian method calculates the continuous phase while the Lagrangian method tracks each coal particle. Fundamental study is carried out to investigate effects of five turbulence models (standard k-epsilon, k-o, RSM, k-o SST, and k-epsilon RNG) and four devolatilization models (Kobayashi, single rate, constant rate, and CPD) on gasification simulation. A study is also conducted to investigate the effects of different operation parameters on gasification process including coal mixture (dry vs. slurry), oxidant (oxygen-blown vs. air-blown), and different coal distributions between two stages. Finite-rate model and instantaneous gasification model are compared. It is revealed that the instantaneous gasification approach can provide an overall evaluation of relative changes of gasifier performance in terms of temperature, heating value, and gasification efficiency corresponding to parametric variations, but not adequately capture the local gasification process predicted by the finite rate model in most part of the gasifier. Simulations are performed to help with design modifications of a small industrial demonstration entrained-flow gasifier. It is discovered that the benefit of opening the slag tap on the quench-type gasifier wider by allowing slag to move successfully without clogging is compromised by increased heat losses, reduced gasification performance

  20. Influence of the Entrainment Interface Layer on Cloud Microphysical Properties near Stratocumulus Top

    NASA Astrophysics Data System (ADS)

    Chuang, P. Y.; Carman, J. K.; Rossiter, D. L.

    2010-12-01

    Entrainment across the stratocumulus-topped boundary layer is a key process governing the cloud properties and evolution. This process is not well-represented even in high-resolution large-eddy simulations, in part due to the sharp gradients in temperature, buoyancy and (usually) humidity that occur at the top of the boundary layer. In summer 2008, the Physics of Stratocumulus Top (POST) field campaign conduct extensive measurements in the vicinity of cloud top, including the so-called entrainment interface layer or EIL that separates boundary layer and free tropospheric air. Roughly half of the fifteen flights occurred during the day (near solar noon) while the remaining flights occurred during late evening-to-night when solar input was minimal. A wide diversity of EIL properties has been revealed over the course of the campaign. EIL vertical thickness diagnosed using total water varies from fairly thin (~20 m) to very thick (>100 m). The thickness and intensity of the turbulent layer in this interfacial region also varies substantially, with the top of the significantly turbulent region ranging from 10 m to 50 m above cloud top. Shear in the vicinity of cloud top also varied strongly from day-to-day. While almost all cases exhibited strong jumps in potential temperature, there are a number of cases where the jump in total water was very small-to-none, and one case where total water was higher in the free troposphere by 1.4 g/kg. POST thus demonstrates that the cloud-top interfacial region exhibits a rich and diverse range of properties. This study focuses on how this EIL diversity affects the stratocumulus cloud itself. We build on our study of the EIL dynamic and thermodynamic properties to investigate the influence of the EIL on the microphysical properties of the stratocumulus in the vicinity of cloud top. Entrainment of the overlying warmer and (usually) drier air can strongly impact the amount of liquid water as well as the size and concentration of cloud

  1. The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape.

    PubMed

    Busby, George B J; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J; Wilson, James F; Myers, Simon; Capelli, Cristian

    2015-10-05

    Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1-7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8-11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia.

  2. Admixture estimates for Caracas, Venezuela, based on autosomal, Y-chromosome, and mtDNA markers.

    PubMed

    Martínez, Helios; Rodríguez-Larralde, Alvaro; Izaguirre, Mary Helen; De Guerra, Dinorah Castro

    2007-04-01

    The present Venezuelan population is the product of admixture of Amerindians, Europeans, and Africans, a process that was not homogeneous throughout the country. Blood groups, short tandem repeats (STRs), mtDNA, and Y-chromosome markers have been used successfully in admixture studies, but few such studies have been conducted in Venezuela. In this study we aim to estimate the admixture components of samples from two different socioeconomic levels from Caracas, Venezuela's capital city, compare their differences, and infer sexual asymmetry in the European Amerindian union patterns. Gene frequencies for blood groups ABO and Rh (CDE) and for the STRs VWA, F13A01, and FES/FPS and mtDNA and Y-chromosome haplogroups were studied in a sample of 60 individuals living in Caracas, taken from a private clinic (high socioeconomic level), and 50 individuals, also living in Caracas, drawn from a public maternity clinic (low socioeconomic level). The admixture analysis for the five autosomal markers gives a high European component (0.78) and an almost negligible African sub-Saharan component (0.06) for the high socioeconomic level, whereas for the low socioeconomic level the sub-Saharan, European, and Amerindian components were 0.21, 0.42, and 0.36, respectively. Estimates of admixture based on mtDNA and Y-chromosome markers reveal that the Amerindian contribution to these Caracas samples is almost entirely through females, because the Y-chromosome Amerindian and African sub-Saharan chromosomes found in this study were scarce. Our study reveals that the identification of the grandparents' geographic origin is an important methodological aspect to take into account in genetic studies related to the reconstruction of historical events.

  3. Power comparison of admixture mapping and direct association analysis in genome-wide association studies.

    PubMed

    Qin, Huaizhen; Zhu, Xiaofeng

    2012-04-01

    When dense markers are available, one can interrogate almost every common variant across the genome via imputation and single nucleotide polymorphism (SNP) test, which has become a routine in current genome-wide association studies (GWASs). As a complement, admixture mapping exploits the long-range linkage disequilibrium (LD) generated by admixture between genetically distinct ancestral populations. It is then questionable whether admixture mapping analysis is still necessary in detecting the disease associated variants in admixed populations. We argue that admixture mapping is able to reduce the burden of massive comparisons in GWASs; it therefore can be a powerful tool to locate the disease variants with substantial allele frequency differences between ancestral populations. In this report we studied a two-stage approach, where candidate regions are defined by conducting admixture mapping at stage 1, and single SNP association tests are followed at stage 2 within the candidate regions defined at stage 1. We first established the genome-wide significance levels corresponding to the criteria to define the candidate regions at stage 1 by simulations. We next compared the power of the two-stage approach with direct association analysis. Our simulations suggest that the two-stage approach can be more powerful than the standard genome-wide association analysis when the allele frequency difference of a causal variant in ancestral populations, is larger than 0.4. Our conclusion is consistent with a theoretical prediction by Risch and Tang ([2006] Am J Hum Genet 79:S254). Surprisingly, our study also suggests that power can be improved when we use less strict criteria to define the candidate regions at stage 1.

  4. The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape

    PubMed Central

    Busby, George B.J.; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J.; Wilson, James F.; Myers, Simon; Capelli, Cristian

    2015-01-01

    Summary Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1, 2, 3, 4, 5, 6, 7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8, 9, 10, 11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia. PMID:26387712

  5. The role of organic compounds in cloud formation: Relative importance of entrainment, co-condensation and particle-phase properties

    NASA Astrophysics Data System (ADS)

    Lowe, Samuel; Partridge, Daniel; Topping, David; Riipinen, Ilona

    2016-04-01

    The organic fraction of atmospheric aerosols is widely acknowledged to affect the cloud nucleating potential of aerosols. Cloud droplet formation through activation of non-volatile CCN is considered to be relatively well understood, however, there are fewer systematic studies on the activation of aerosols containing semi-volatile organic compounds that co-condense alongside water vapour, thus enhancing CCN activity. Although the significance of co-condensation of organic vapours for cloud droplet number concentration predictions has recently been identified, it remains uncertain how this process may interact with atmospheric dynamics. In addition to co-condensation of existing in-cloud material, additional semi-volatile mass can be entrained from the surrounding environment. Reduced cloud droplet number concentrations are expected as the parcel is diluted with clean air; however, additional soluble mass in the particle phase promotes droplet activation. The extent of increased droplet activation due to co-condensation relies also on the physiochemical properties of the organic compounds, as seen in several other phase partitioning sensitivity studies. In this work we study the simultaneous impact of entrainment and co-condensation, the relative importance of these two processes at different atmospheric conditions, their interactions with each other, and the particle-phase chemistry in terms of cloud microphysical properties and their parametric sensitivities. To assess the importance of the entrainment of semi-volatile materials as compared with their co-condensation and chemical properties, a pseudo-adiabatic cloud parcel model with a detailed description of bin microphysics is employed. We have added the co-condensation process to the model such that it is coupled with the parametric entrainment representation. The effects of entrainment and co-condensation are benchmarked independently and simultaneously against a control simulation. Furthermore, we probe the

  6. Entrainment of circadian clocks in mammals by arousal and food.

    PubMed

    Mistlberger, Ralph E; Antle, Michael C

    2011-06-30

    Circadian rhythms in mammals are regulated by a system of endogenous circadian oscillators (clock cells) in the brain and in most peripheral organs and tissues. One group of clock cells in the hypothalamic SCN (suprachiasmatic nuclei) functions as a pacemaker for co-ordinating the timing of oscillators elsewhere in the brain and body. This master clock can be reset and entrained by daily LD (light-dark) cycles and thereby also serves to interface internal with external time, ensuring an appropriate alignment of behavioural and physiological rhythms with the solar day. Two features of the mammalian circadian system provide flexibility in circadian programming to exploit temporal regularities of social stimuli or food availability. One feature is the sensitivity of the SCN pacemaker to behavioural arousal stimulated during the usual sleep period, which can reset its phase and modulate its response to LD stimuli. Neural pathways from the brainstem and thalamus mediate these effects by releasing neurochemicals that inhibit retinal inputs to the SCN clock or that alter clock-gene expression in SCN clock cells. A second feature is the sensitivity of circadian oscillators outside of the SCN to stimuli associated with food intake, which enables animals to uncouple rhythms of behaviour and physiology from LD cycles and align these with predictable daily mealtimes. The location of oscillators necessary for food-entrained behavioural rhythms is not yet certain. Persistence of these rhythms in mice with clock-gene mutations that disable the SCN pacemaker suggests diversity in the molecular basis of light- and food-entrainable clocks.

  7. Mixing and entrainment in hydraulically driven stratified sill flows

    NASA Astrophysics Data System (ADS)

    Holtegaard Nielsen, Morten; Pratt, Larry; Helfrich, Karl

    2004-09-01

    The investigation involves the hydraulic behaviour of a dense layer of fluid flowing over an obstacle and subject to entrainment of mass and momentum from a dynamically inactive (but possibly moving) overlying fluid. An approach based on the use of reduced gravity, shallow-water theory with a cross-interface entrainment velocity is compared with numerical simulations based on a model with continuously varying stratification and velocity. The locations of critical flow (hydraulic control) in the continuous model are estimated by observing the direction of propagation of small-amplitude long-wave disturbances introduced into the flow field. Although some of the trends predicted by the shallow-water model are observed in the continuous model, the agreement between the interface profiles and the position of critical flow is quantitatively poor. A reformulation of the equations governing the continuous flow suggests that the reduced gravity model systematically underestimates inertia and overestimates buoyancy. These differences are quantified by shape coefficients that measure the vertical non-uniformities of the density and horizontal velocity that arise, in part, by incomplete mixing of entrained mass and momentum over the lower-layer depth. Under conditions of self-similarity (as in Wood's similarity solution) the shape coefficients are constant and the formulation determines a new criterion for and location of critical flow. This location generally lies upstream of the critical section predicted by the reduced-gravity model. Self-similarity is not observed in the numerically generated flow, but the observed critical section continues to lie upstream of the location predicted by the reduced gravity model. The factors influencing this result are explored.

  8. Differential entrainment of a social rhythm in adolescent mice.

    PubMed

    Panksepp, Jules B; Wong, Jenny C; Kennedy, Bruce C; Lahvis, Garet P

    2008-12-22

    Daily routines in animal activities range from sleep-wake cycles, to foraging bouts, to social interactions. Among animals living within groups, it is unclear whether the motivations that underlie social interactions respond to daily light-dark (LD) cycles or endogenous circadian rhythms. Employing two mouse strains (BALB/cJ [BALB] and C57BL/6J [B6]) with genetically based differences in social affect and circadian rhythms, we examined how social investigation (SI) is modulated by social deprivation and circadian factors. We found a genetic influence on SI that was moderated by the preceding duration of social deprivation, requiring 3-6 h of social isolation prior to testing. Following 6h of social deprivation, the SI responses of adolescent B6 mice were greater than those of BALB mice only when the isolation period was imposed during the dark phase of the LD cycle. When B6 mice were weaned into conditions of constant darkness, a novel, endogenous social rhythm emerged, which was characterized by two pronounced peaks of social responsiveness (relative to one peak under LD entrainment) that were separated by 12-h intervals. Irrespective of the lighting conditions during social isolation, the SI responses of adolescent BALB mice did not oscillate across the day. Similar strain-dependent patterns of sociability were evident within groups of mice that were left undisturbed in their home cage under LD entrainment or constant darkness. Overall, genetic influences on the social phenotypes of adolescent mice are thus moderated by an interaction between social deprivation and oscillations of an endogenous social rhythm that entrains to the LD cycle.

  9. Entrainment characteristics of unsteady subsonic jets. [for V/STOL aircraft

    NASA Technical Reports Server (NTRS)

    Platzer, M. F.; Simmons, J. M.; Bremhorst, K.

    1979-01-01

    The effectiveness of jet unsteadiness in enhancing flow entrainment was assessed. It was conducted that entrainment depends on the type and amount of jet unsteadiness. Apparently, the mere introduction of jet unsteadiness by small sinusoidal flow angle variations is insufficient to enhance entrainment but, it should be noted that the results were obtained at measuring stations which are all many nozzle widths downstream of the jet nozzle. Thus, no fully conclusive statement can be made at this time about the entrainment close to the nozzle. The high entrainment of the fluidically oscillated jet was caused by the high-frequency content of this square wave type of oscillation but more detailed measurements are clearly needed, in particular for the fluidically oscillated and the pulsed jets. Practical ejector application requires the proper trade-off between entrainment and primary nozzle thrust efficiency.

  10. Porous Sphere in Stratified Environments: Entrainment and Diffusion

    NASA Astrophysics Data System (ADS)

    Camassa, Roberto; Falcon, Claudia; Khatri, Shilpa; McLaughlin, Richard; UNC Joint Fluids Lab Team

    2014-11-01

    A theoretical, experimental, and numerical study of porous spheres falling in stratified fluids will be presented. The systematic justification of asymptotic regimes resulting in asymptotic models with ``heat bath'' boundary conditions for salinity are derived in low Reynolds number regimes. Violation of these asymptotic scalings will be discussed in the context of experiments and mathematical modeling. In particular the presence of a salt depletion or enrichment wake left behind by the settling, ab/de-sorbing sphere, and its competition with entrainment, will be presented and highlighted. Experimental results with microporous spheres as well calibrated manufactured drilled spheres will be compared. Supported by: NSF CMG, NSF RTG, ONR.

  11. The effects of chronic marijuana use on circadian entrainment.

    PubMed

    Whitehurst, Lauren N; Fogler, Kethera; Hall, Kate; Hartmann, Matthew; Dyche, Jeff

    2015-05-01

    Animal literature suggests a connection between marijuana use and altered circadian rhythms. However, the effect has not yet been demonstrated in humans. The present study examined the effect of chronic marijuana use on human circadian function. Participants consisted of current users who reported smoking marijuana daily for at least a year and non-marijuana user controls. Participants took a neurocognitive assessment, wore actigraphs and maintained sleep diaries for three weeks. While no significant cognitive changes were found between groups, data revealed that chronic marijuana use may act as an additional zeitgeber and lead to increased entrainment in human users.

  12. Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

    SciTech Connect

    Yum, Seong Soo; Wang, Jian; Liu, Yangang; Senum, Gunnar; Springston, Stephen; McGraw, Robert; Yeom, Jae Min

    2015-05-27

    Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurements were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.

  13. Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

    DOE PAGES

    Yum, Seong Soo; Wang, Jian; Liu, Yangang; ...

    2015-05-27

    Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurementsmore » were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.« less

  14. Assessing population effects from entrainment of fish at a large volume water intake

    SciTech Connect

    Gray, R.H.; Page, T.L.; Neitzel, D.A.; Dauble, D.D.

    1986-01-01

    A method is described for estimating population effects from entrainment of juvenile chinook salmon (Oncorhynchus tshawytscha) at a steam electric generating station on the Columbia River that required cooperation between power plant operators and fishery biologists. The method involved sampling fish in the river and entrained fish (both marked recaptures and naturally occurring downstream migrants) within the intake, and estimating the 1) total number of fish entrained, 2) size of the natural population, and 3) percent of the natural population affected.

  15. Method of making an air electrode material having controlled sinterability

    DOEpatents

    Vasilow, Theodore R.; Kuo, Lewis J. H.; Ruka, Roswell J.

    1994-01-01

    A tubular, porous ceramic electrode structure (3) is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte (4), substantially surrounds the air electrode, and a porous outer fuel electrode (7) substantially surrounds the electrolyte, to form a fuel cell (1).

  16. Method of making an air electrode material having controlled sinterability

    DOEpatents

    Vasilow, T.R.; Kuo, L.J.H.; Ruka, R.J.

    1994-08-30

    A tubular, porous ceramic electrode structure is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte, substantially surrounds the air electrode, and a porous outer fuel electrode substantially surrounds the electrolyte, to form a fuel cell. 2 figs.

  17. Impact of entrainment and impingement on fish populations in the Hudson River estuary. Volume I. Entrainment-impact estimates for six fish populations inhabiting the Hudson River estuary

    SciTech Connect

    Boreman, J.; Barnthouse, L.W.; Vaughn, D.S.; Goodyear, C.P.; Christensen, S.W.; Kumar, K.D.; Kirk, B.L.; Van Winkle, W.

    1982-01-01

    This volume is concerned with the estimation of the direct (or annual) entrainment impact of power plants on populations of striped bass, white perch, Alosa spp. (blueback herring and alewife), American shad, Atlantic tomcod, and bay anchovy in the Hudson River estuary. Entrainment impact results from the killing of fish eggs, larvae, and young juveniles that are contained in the cooling water cycled through a power plant. An Empirical Transport Model (ETM) is presented as the means of estimating a conditional entrainment mortality rate (defined as the fraction of a year class which would be killed due to entrainment in the absence of any other source of mortality). Most of this volume is concerned with the estimation of several parameters required by the ETM: physical input parameters (e.g., power-plant withdrawal flow rates); the longitudinal distribution of ichthyoplankton in time and space; the duration of susceptibility of the vulnerable organisms; the W-factors, which express the ratios of densities of organisms in power plant intakes to densities of organisms in the river; and the entrainment mortality factors (f-factors), which express the probability that an organism will be killed if it is entrained. Once these values are obtained, the ETM is used to estimate entrainment impact for both historical and projected conditions.

  18. Ifluence of crystallization and entrainment of cooler material on the emplacement of basaltic aa lava flows

    NASA Technical Reports Server (NTRS)

    Crisp, Joy; Baloga, Stephen

    1994-01-01

    A theoretical model is used to describe and investigate the effects of simultaneous crystallization, radiation loss, and entrainment of cooler material on the temperature of a well-mixed core of an active aa lava flow. Entrainment of crust, levee debris, and base material into the interior of active flows has been observed, but the degree of assimilation and the thermal consequences are difficult to quantify. The rate of entrainment can be constrained by supplementing the theoretical model with information on the crystallization along the path of the flow and estimation of the radiative loss from the flow interior. Application of the model is demonstrated with the 1984 Mauna Loa flow, which was erupted about 30 C undercooled. Without any entrainment of cooler material, the high crystallization rates would have driven temperatures in the core wall above temperatures measured by thermocouple and estimated from glass geothermometry. One plausible scenario for this flow, which agrees with available temperature and crystallinity measurements, has a high initial rate of entrainment during the first 8 hours of travel (a mass ratio of entrained material to fluid core of about 15% if the average temperature of the entrained material was 600 C), which counterbalances the latent heat from approximately 40% crystallization. In this scenario, the model suggests an additional 5% crystallization and a 5% entrainment mass ratio over the subsequent 16-hour period. Measurements of crystallization, radiative losses, and entrainment factors are necessary for understanding the detailed thermal histories of active lava flows.

  19. Auditory cortical delta-entrainment interacts with oscillatory power in multiple fronto-parietal networks.

    PubMed

    Keitel, Anne; Ince, Robin A A; Gross, Joachim; Kayser, Christoph

    2017-02-15

    The timing of slow auditory cortical activity aligns to the rhythmic fluctuations in speech. This entrainment is considered to be a marker of the prosodic and syllabic encoding of speech, and has been shown to correlate with intelligibility. Yet, whether and how auditory cortical entrainment is influenced by the activity in other speech-relevant areas remains unknown. Using source-localized MEG data, we quantified the dependency of auditory entrainment on the state of oscillatory activity in fronto-parietal regions. We found that delta band entrainment interacted with the oscillatory activity in three distinct networks. First, entrainment in the left anterior superior temporal gyrus (STG) was modulated by beta power in orbitofrontal areas, possibly reflecting predictive top-down modulations of auditory encoding. Second, entrainment in the left Heschl's Gyrus and anterior STG was dependent on alpha power in central areas, in line with the importance of motor structures for phonological analysis. And third, entrainment in the right posterior STG modulated theta power in parietal areas, consistent with the engagement of semantic memory. These results illustrate the topographical network interactions of auditory delta entrainment and reveal distinct cross-frequency mechanisms by which entrainment can interact with different cognitive processes underlying speech perception.

  20. Sensory Entrainment Mechanisms in Auditory Perception: Neural Synchronization Cortico-Striatal Activation

    PubMed Central

    Sameiro-Barbosa, Catia M.; Geiser, Eveline

    2016-01-01

    The auditory system displays modulations in sensitivity that can align with the temporal structure of the acoustic environment. This sensory entrainment can facilitate sensory perception and is particularly relevant for audition. Systems neuroscience is slowly uncovering the neural mechanisms underlying the behaviorally observed sensory entrainment effects in the human sensory system. The present article summarizes the prominent behavioral effects of sensory entrainment and reviews our current understanding of the neural basis of sensory entrainment, such as synchronized neural oscillations, and potentially, neural activation in the cortico-striatal system. PMID:27559306

  1. Refractive index matched suspensions as a tool for investigating entrainment by avalanches and debris flows

    NASA Astrophysics Data System (ADS)

    Bates, Belinda; Ancey, Christophe

    2015-04-01

    Geophysical gravity flows such as avalanches and debris flows are complicated mixtures of fluid and solids, often containing particle sizes of many orders of magnitude. In a debris flow, for example, the composition varies from head to tail, and from bottom to top due to particle size segregation and recirculation. In addition the solid components may have different masses and mechanical properties. For this reason, a complete understanding of substrate entrainment by this type of flow is still out of reach. A common strategy for advancing our understanding of the physics of processes like entrainment is to use a greatly simplified laboratory model of a debris flow, and take internal and bulk measurements. This idealized technique forms the basis of this study, in which a two-phase, monodisperse suspension of PMMA beads in a refractive-index matched suspending fluid flowed down a flume, encountering an entrainable region of the same suspension on the way. This study represents the first attempt of taking continuous internal velocity measurements inside a flowing, entraining model avalanche or debris flow in the laboratory. Interior PIV measurements of flow velocity were taken in the entrainable region, along with surface height measurements, to shed some light on the entrainment mechanisms and to see how the bulk flow responded. Further, some differential pressure measurements were made in the entrainable bed to see if pore-pressure peaks had any correlation with significant events during entrainment. We present our preliminary findings and discuss the suitability of the method to entrainment investigations.

  2. Acute management of vascular air embolism.

    PubMed

    Shaikh, Nissar; Ummunisa, Firdous

    2009-09-01

    Vascular air embolism (VAE) is known since early nineteenth century. It is the entrainment of air or gas from operative field or other communications into the venous or arterial vasculature. Exact incidence of VAE is difficult to estimate. High risk surgeries for VAE are sitting position and posterior fossa neurosurgeries, cesarean section, laparoscopic, orthopedic, surgeries invasive procedures, pulmonary overpressure syndrome, and decompression syndrome. Risk factors for VAE are operative site 5 cm above the heart, creation of pressure gradient which will facilitate entry of air into the circulation, orogenital sex during pregnancy, rapid ascent in scuba (self contained underwater breathing apparatus) divers and barotrauma or chest trauma. Large bolus of air can lead to right ventricular air lock and immediate fatality. In up to 35% patient, the foramen ovale is patent which can cause paradoxical arterial air embolism. VAE affects cardiovascular, pulmonary and central nervous system. High index of clinical suspicion is must to diagnose VAE. The transesophgeal echocardiography is the most sensitive device which will detect smallest amount of air in the circulation. Treatment of VAE is to prevent further entrainment of air, reduce the volume of air entrained and haemodynamic support. Mortality of VAE ranges from 48 to 80%. VAE can be prevented significantly by proper positioning during surgery, optimal hydration, avoiding use of nitrous oxide, meticulous care during insertion, removal of central venous catheter, proper guidance, and training of scuba divers.

  3. Photic entrainment of the mammalian rhythm in melatonin production.

    PubMed

    Illnerová, H; Sumová, A

    1997-12-01

    This review summarizes studies on the photic entrainment of the circadian rhythm in the rat pineal melatonin production, namely of the rhythm in N-acetyltransferase (NAT) activity, and compares the NAT rhythm resetting with preliminary results on the resetting of an intrinsic rhythmicity in the suprachiasmatic nucleus (SCN) of the hypothalamus, namely with the entrainment of the rhythm in the light-induced c-fos gene expression. Phase delaying of the NAT rhythm after various light stimuli proceeds within 1 day with almost no transients, whereas during phase advancing of the rhythm only the morning NAT decline is phase advanced within 1 day and the evening rise phase shifts through transients. A light stimulus encompassing the middle of the night may phase delay the evening NAT rise, phase advance the morning decline, compress the rhythm waveform, and eventually lower its amplitude. Similarly, a long photoperiod compresses the NAT rhythm waveform. The magnitude of phase shifts of the NAT rhythm, as well as their direction, depends on a previous photoperiod. Phase shifts of the evening rise in c-fos gene photoinduction in the SCN and of the morning decline are similar to those of the pineal NAT rhythm after all light stimuli studied so far. The data indicate that the resetting of the rhythm in melatonin production in the rat pineal gland reflects changes in the SCN functional state and suggest that the underlying SCN pacemaking system is complex.

  4. Noise Induces Hopping between NF-κB Entrainment Modes.

    PubMed

    Heltberg, Mathias; Kellogg, Ryan A; Krishna, Sandeep; Tay, Savaş; Jensen, Mogens H

    2016-12-21

    Oscillations and noise drive many processes in biology, but how both affect the activity of the transcription factor nuclear factor κB (NF-κB) is not understood. Here, we observe that when NF-κB oscillations are entrained by periodic tumor necrosis factor (TNF) inputs in experiments, NF-κB exhibits jumps between frequency modes, a phenomenon we call "cellular mode-hopping." By comparing stochastic simulations of NF-κB oscillations to deterministic simulations conducted inside and outside the chaotic regime of parameter space, we show that noise facilitates mode-hopping in all regimes. However, when the deterministic system is driven by chaotic dynamics, hops between modes are erratic and short-lived, whereas in experiments, the system spends several periods in one entrainment mode before hopping and rarely visits more than two modes. The experimental behavior matches our simulations of noise-induced mode-hopping outside the chaotic regime. We suggest that mode-hopping is a mechanism by which different NF-κB-dependent genes under frequency control can be expressed at different times.

  5. Axially symmetric equations for differential pulsar rotation with superfluid entrainment

    NASA Astrophysics Data System (ADS)

    Antonelli, M.; Pizzochero, P. M.

    2017-01-01

    In this article we present an analytical two-component model for pulsar rotational dynamics. Under the assumption of axial symmetry, implemented by a paraxial array of straight vortices that thread the entire neutron superfluid, we are able to project exactly the 3D hydrodynamical problem to a 1D cylindrical one. In the presence of density-dependent entrainment the superfluid rotation is non-columnar: we circumvent this by using an auxiliary dynamical variable directly related to the areal density of vortices. The main result is a system of differential equations that take consistently into account the stratified spherical structure of the star, the dynamical effects of non-uniform entrainment, the differential rotation of the superfluid component and its coupling to the normal crust. These equations represent a mathematical framework in which to test quantitatively the macroscopic consequences of the presence of a stable vortex array, a working hypothesis widely used in glitch models. Even without solving the equations explicitly, we are able to draw some general quantitative conclusions; in particular, we show that the reservoir of angular momentum (corresponding to recent values of the pinning forces) is enough to reproduce the largest glitch observed in the Vela pulsar, provided its mass is not too large.

  6. Entrainment of leech swimming activity by the ventral stretch receptor.

    PubMed

    Yu, Xintian; Friesen, W Otto

    2004-11-01

    Rhythmic animal movements originate in CNS oscillator circuits; however, sensory inputs play an important role in shaping motor output. Our recent studies demonstrated that leeches with severed nerve cords swim with excellent coordination between the two ends, indicating that sensory inputs are sufficient for maintaining intersegmental coordination. In this study, we examined the neuronal substrates that underlie intersegmental coordination via sensory mechanisms. Among the identified sensory neurons in the leech, we found the ventral stretch receptor (VSR) to be the best candidate for our study because of its sensitivity to tension in longitudinal muscle. Our experiments demonstrate that (1) the membrane potential of the VSR is depolarized during swimming and oscillates with an amplitude of 1.5-5.0 mV, (2) rhythmic currents injected into the VSR can entrain ongoing swimming over a large frequency range (0.9-1.8 Hz), and (3) large current pulses injected into the VSR shift the phase of the swimming rhythm. These results suggest that VSRs play an important role in generating and modulating the swim rhythm. We propose that coordinated swimming in leech preparations with severed nerve cords results from mutual entrainment between the two ends of the leech mediated by stretch receptors.

  7. Altered streamflow and sediment entrainment in the Gunnison Gorge

    USGS Publications Warehouse

    Elliott, J.G.; Parker, R.S.

    1997-01-01

    The Gunnison River in the Gunnison Gorge is a canyon river where upstream dams regulate mainstem discharge but do not affect debris-flow sediment supply from tributaries entering below the reservoirs. Regulation since 1966 has altered flood frequency, streambed mobility, and fluvial geomorphology creating potential resource-management issues. The duration of moderate streamflows between 32.3 and 85.0 m3/s has increased threefold since 1966. This, along with flood-peak attenuation, has facilitated fine-sediment deposition and vegetation encroachment on stream banks. The Shields equation and on-site channel geometry and bed-material measurements were used to assess changes in sediment entrainment in four alluvial reaches. Sand and fine gravel are transported through riffle/pool reaches at most discharges, but the cobbles and boulders composing the streambed in many reaches now are infrequently entrained. Periodic debris flows add coarse sediment to rapids and can increase pool elevation and the streambed area affected by backwater and fine-sediment accumulation. Debris-flow supplied boulders accumulate on fans and in rapids and constrict the channel until reworked by larger floods. The response to streamflow-regime changes in the Gunnison Gorge could serve as an analog for alluvial reaches in other regulated canyon rivers.

  8. Newborn primate infants are entrained by low intensity lighting

    PubMed Central

    Rivkees, Scott A.; Hofman, Paul L.; Fortman, Jeffrey

    1997-01-01

    At the present time we do not know when the circadian timing system of human infants becomes responsive to light. Because of human study limitations, it is not currently possible to address this issue in clinical studies. Therefore, to provide insights into when the circadian system of humans becomes responsive to light, baboons were studied. We first assessed if the biological clock located in suprachiasmatic nuclei (SCN) is responsive to light at birth. When term newborn infants were exposed to bright light at night (5000 lux), SCN metabolic activity and c-fos mRNA expression increased, indicating the presence of photic responsiveness. When photic entrainment of developing rhythmicity was examined in infants, low intensity (200 lux) cycled lighting was sufficient to entrain circadian phase. However, low intensity lighting was not sufficient to induce changes in SCN metabolic activity or c-fos mRNA expression. Phase–response studies indicated that light exposure (200 lux) before the onset of activity most effectively shifted circadian phase. These data provide direct evidence that the SCN are responsive to visually mediated light information in a primate at birth. Further consideration of lighting conditions that infants are exposed to is therefore warranted. PMID:8990202

  9. Establishing Communication between Neuronal Populations through Competitive Entrainment

    PubMed Central

    Wildie, Mark; Shanahan, Murray

    2012-01-01

    The role of gamma frequency oscillation in neuronal interaction, and the relationship between oscillation and information transfer between neurons, has been the focus of much recent research. While the biological mechanisms responsible for gamma oscillation and the properties of resulting networks are well studied, the dynamics of changing phase coherence between oscillating neuronal populations are not well understood. To this end we develop a computational model of competitive selection between multiple stimuli, where the selection and transfer of population-encoded information arises from competition between converging stimuli to entrain a target population of neurons. Oscillation is generated by Pyramidal-Interneuronal Network Gamma through the action of recurrent synaptic connections between a locally connected network of excitatory and inhibitory neurons. Competition between stimuli is driven by differences in coherence of oscillation, while transmission of a single selected stimulus is enabled between generating and receiving neurons via Communication-through-Coherence. We explore the effect of varying synaptic parameters on the competitive transmission of stimuli over different neuron models, and identify a continuous region within the parameter space of the recurrent synaptic loop where inhibition-induced oscillation results in entrainment of target neurons. Within this optimal region we find that competition between stimuli of equal coherence results in model output that alternates between representation of the stimuli, in a manner strongly resembling well-known biological phenomena resulting from competitive stimulus selection such as binocular rivalry. PMID:22275892

  10. Properties of Portland cement concretes containing pozzolanic admixtures

    NASA Astrophysics Data System (ADS)

    Simmons, D. D.; Pasko, T. J., Jr.; Jones, W. R.

    1981-04-01

    A laboratory comparison was made of the properties of a concrete containing no pozzolan with several mixtures containing pozzolans. Used were a natural pozzolan (Lassenite), two fly ashes of different fineness and low carbon and an amorphous silica fume dust from a metal-producing plant. One cement, one coarse crushed limestone aggregate, and one fine river aggregate were used. Replacing a faster reacting binder with a slower one, produced lower early strengths and adversely affected the properties which are highly dependent on strength. The measures of durability were greatly affected by the air contents and aging or treatment prior to exposure. The amorphous silica fume dust increased the early strengths of a fly ash mixture.

  11. Consequences of meta-stable (177m)Lu admixture in (177)Lu for patient dosimetry.

    PubMed

    Konijnenberg, Mark W

    2015-01-01

    Lutetium-177 ((177)Lu) is a rare earth metal in the lanthanides series which decays by beta emission with a half life of 6.647 days to three excited states and the ground state of (177)Hf. When (177)Lu is produced by neutron capture in (176)Lu, inevitably an admixture is formed of the long-lived isomer (177)mLu. As its half-life of 160.4 days is so much longer than that of (177)Lu, concerns are raised on its possible enhancement in radiation dose to the patient treated with (177)Lu-DOTA-octreotate. This report evaluates this possible enhancement of the absorbed dose, based on the published pharmacokinetic profile of (177)Lu-DOTA-octreotate and assuming an admixture of 1 kBq (177)mLu /MBq (177)Lu (0.1%).

  12. Direct-to-Consumer Racial Admixture Tests and Beliefs About Essential Racial Differences

    PubMed Central

    Phelan, Jo C.; Link, Bruce G.; Zelner, Sarah; Yang, Lawrence H.

    2015-01-01

    Although at first relatively disinterested in race, modern genomic research has increasingly turned attention to racial variations. We examine a prominent example of this focus—direct-to-consumer racial admixture tests—and ask how information about the methods and results of these tests in news media may affect beliefs in racial differences. The reification hypothesis proposes that by emphasizing a genetic basis for race, thereby reifying race as a biological reality, the tests increase beliefs that whites and blacks are essentially different. The challenge hypothesis suggests that by describing differences between racial groups as continua rather than sharp demarcations, the results produced by admixture tests break down racial categories and reduce beliefs in racial differences. A nationally representative survey experiment (N = 526) provided clear support for the reification hypothesis. The results suggest that an unintended consequence of the genomic revolution may be to reinvigorate age-old beliefs in essential racial differences. PMID:25870464

  13. The origin of early age expansions induced in cementitious materials containing shrinkage reducing admixtures

    SciTech Connect

    Sant, Gaurav; Lothenbach, Barbara; Juilland, Patrick; Le Saout, Gwenn; Weiss, Jason; Scrivener, Karen

    2011-03-15

    Studies on the early-age shrinkage behavior of cement pastes, mortars, and concretes containing shrinkage reducing admixtures (SRAs) have indicated these mixtures frequently exhibit an expansion shortly after setting. While the magnitude of the expansion has been noted to be a function of the chemistry of the cement and the admixture dosage; the cause of the expansion is not clearly understood. This investigation uses measurements of autogenous deformation, X-ray diffraction, pore solution analysis, thermogravimetry, and scanning electron microscopy to study the early-age properties and describe the mechanism of the expansion in OPC pastes made with and without SRA. The composition of the pore solution indicates that the presence of the SRA increases the portlandite oversaturation level in solution which can result in higher crystallization stresses which could lead to an expansion. This observation is supported by deformation calculations for the systems examined.

  14. What causes birth order-intelligence patterns? The admixture hypothesis, revived.

    PubMed

    Rodgers, J L

    2001-01-01

    Recent evidence shows that the relation between birth order and intelligence is not the same in cross-sectional and within-family data. This simple empirical observation invalidates the conclusions from hundreds of previous birth order studies that relied on cross-sectional data. Simultaneously, the empirical foundation disappears from underneath theories like dilution and the confluence model that use explanatory processes occurring within the family. A theory proposed almost 25 years ago--the admixture hypothesis--effectively accounts for these empirical patterns. In this article, the author describes why birth order is of such intense interest to both parents and researchers (the birth order trap), discusses past birth order-intelligence patterns, shows that the admixture hypothesis accounts for those patterns, and reframes the original argument to support future productive research efforts.

  15. An Experimental Study of Plunging Liquid Jet Induced Air Carryunder and Dispersion

    DTIC Science & Technology

    1991-12-24

    jet . This jet impacted at 90* a pool of water and, when a threshold velocity was exceeded, it was observed that the plunging liquid jet caused air ... Entrainment by Plunging Laminar Liquid Jets ," AIChE Journal, Vol. 12, No. 3, 563, 1966. McKeogh, E.J. and Ervine, D.A., " Air Entrainment Rate and Diffusion...transmit the fourth quarterly report for ONR grant N00014-91-J-1271, "An Experimental Study of Plunging Liquid

  16. Tracing the origin of the east-west population admixture in the Altai region (Central Asia).

    PubMed

    González-Ruiz, Mercedes; Santos, Cristina; Jordana, Xavier; Simón, Marc; Lalueza-Fox, Carles; Gigli, Elena; Aluja, Maria Pilar; Malgosa, Assumpció

    2012-01-01

    A recent discovery of Iron Age burials (Pazyryk culture) in the Altai Mountains of Mongolia may shed light on the mode and tempo of the generation of the current genetic east-west population admixture in Central Asia. Studies on ancient mitochondrial DNA of this region suggest that the Altai Mountains played the role of a geographical barrier between West and East Eurasian lineages until the beginning of the Iron Age. After the 7th century BC, coinciding with Scythian expansion across the Eurasian steppes, a gradual influx of East Eurasian sequences in Western steppes is detected. However, the underlying events behind the genetic admixture in Altai during the Iron Age are still unresolved: 1) whether it was a result of migratory events (eastward firstly, westward secondly), or 2) whether it was a result of a local demographic expansion in a 'contact zone' between European and East Asian people. In the present work, we analyzed the mitochondrial DNA lineages in human remains from Bronze and Iron Age burials of Mongolian Altai. Here we present support to the hypothesis that the gene pool of Iron Age inhabitants of Mongolian Altai was similar to that of western Iron Age Altaians (Russia and Kazakhstan). Thus, this people not only shared the same culture (Pazyryk), but also shared the same genetic east-west population admixture. In turn, Pazyryks appear to have a similar gene pool that current Altaians. Our results further show that Iron Age Altaians displayed mitochondrial lineages already present around Altai region before the Iron Age. This would provide support for a demographic expansion of local people of Altai instead of westward or eastward migratory events, as the demographic event behind the high population genetic admixture and diversity in Central Asia.

  17. Intraspecific genetic admixture and the morphological diversification of an estuarine fish population complex.

    PubMed

    Dodson, Julian J; Bourret, Audrey; Barrette, Marie France; Turgeon, Julie; Daigle, Gaétan; Legault, Michel; Lecomte, Frédéric

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources.

  18. Intraspecific Genetic Admixture and the Morphological Diversification of an Estuarine Fish Population Complex

    PubMed Central

    Legault, Michel

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

  19. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence.

    PubMed

    Molofsky, Jane; Keller, Stephen R; Lavergne, Sébastien; Kaproth, Matthew A; Eppinga, Maarten B

    2014-04-01

    Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological organization such as communities and ecosystems. Because biological invasions frequently involve the admixture of previously isolated lineages as a result of human-aided dispersal, studies of invasive populations can reveal how admixture results in novel genotypes and shifts in functional trait variation within populations. Further, because invasive species can be ecosystem engineers within invaded ecosystems, admixture-induced shifts in the functional traits of invaders can affect the composition of native biodiversity and alter the flow of resources through the system. Thus, invasions represent promising yet under-investigated examples of how the effects of short-term evolutionary changes can cascade across biological scales of diversity. Here, we propose a conceptual framework that admixture between divergent source populations during biological invasions can reorganize the genetic variation underlying key functional traits, leading to shifts in the mean and variance of functional traits within invasive populations. Changes in the mean or variance of key traits can initiate new ecological feedback mechanisms that result in a critical transition from a native ecosystem to a novel invasive ecosystem. We illustrate the application of this framework with reference to a well-studied plant model system in invasion biology and show how a combination of quantitative genetic experiments, functional trait studies, whole ecosystem field studies and modeling can be used to explore the dynamics predicted to trigger these critical transitions.

  20. GWAS and admixture mapping identify different asthma-associated loci in Latinos: The GALA II Study

    PubMed Central

    Galanter, Joshua M; Gignoux, Christopher R; Torgerson, Dara G; Roth, Lindsey A; Eng, Celeste; Oh, Sam S; Nguyen, Elizabeth A; Drake, Katherine A; Huntsman, Scott; Hu, Donglei; Sen, Saunak; Davis, Adam; Farber, Harold J.; Avila, Pedro C.; Brigino-Buenaventura, Emerita; LeNoir, Michael A.; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodríguez-Cintrón, William; Estrada, Andres Moreno; Mendoza, Karla Sandoval; Winkler, Cheryl A.; Klitz, William; Romieu, Isabelle; London, Stephanie J.; Gilliland, Frank; Martinez, Fernando; Bustamante, Carlos; Williams, L Keoki; Kumar, Rajesh; Rodríguez-Santana, José R.; Burchard, and Esteban G.

    2013-01-01

    Background Asthma is a complex disease with both genetic and environmental causes. Genome-wide association studies of asthma have mostly involved European populations and replication of positive associations has been inconsistent. Objective To identify asthma-associated genes in a large Latino population with genome-wide association analysis and admixture mapping. Methods Latino children with asthma (n = 1,893) and healthy controls (n = 1,881) were recruited from five sites in the United States: Puerto Rico, New York, Chicago, Houston, and the San Francisco Bay Area. Subjects were genotyped on an Affymetrix World Array IV chip. We performed genome-wide association and admixture mapping to identify asthma-associated loci. Results We identified a significant association between ancestry and asthma at 6p21 (lowest p-value: rs2523924, p < 5 × 10−6). This association replicates in a meta-analysis of the EVE Asthma Consortium (p = 0.01). Fine mapping of the region in this study and the EVE Asthma Consortium suggests an association between PSORS1C1 and asthma. We confirmed the strong allelic association between the 17q21 asthma in Latinos (IKZF3, lowest p-value: rs90792, OR: 0.67, 95% CI 0.61 – 0.75, p = 6 × 10−13) and replicated associations in several genes that had previously been associated with asthma in genome-wide association studies. Conclusions Admixture mapping and genome-wide association are complementary techniques that provide evidence for multiple asthma-associated loci in Latinos. Admixture mapping identifies a novel locus on 6p21 that replicates in a meta-analysis of several Latino populations, while genome-wide association confirms the previously identified locus on 17q21. PMID:24406073

  1. Plant cover and water balance in gravel admixtures at an arid waste-burial site

    SciTech Connect

    Waugh, W.J.; Thiede, M.E.; Bates, D.J.

    1994-07-01

    Isolation of radioactive waste buried in unsaturated zones will require long-term control of recharge and erosion. Soil covers control recharge at and sites by storing rainwater close enough to the surface to be removed by evapotranspiration. Surface layers of rock or gravel control erosion at sites with sparse vegetation, but can also alter plant habitat and cause recharge through interred waste. As an alternative, gravel mixed into the uppermost soil law may control erosion ever the king-term better than surface gravel layers. Gravel admixtures may also not influence plant establishment or sod water balance in waste-site covers. The interactive effects of gravel admixture concentration, vegetation, and precipitation on soil water content and plant cover were measured at the US Department of Energy`s Hanford Site. Results support use of a combination of vegetation and gravel admixtures for erosion control. Vegetation seasonally depleted root zone water storage to about 6.5 volume % regardless of precipitation amount or the presence of gravel admixture amendments. In contrast, yearly increases in soil water storage as deep as 225 cm in plots without vegetation may be a leading indicator of recharge. The composition and abundance of vegetation changed over time and with precipitation amount, but was not influenced by gravel amendments. Seeded wheatgrasses [Agropyron sibericum Wilde and Agropyron dasystachyum (Hook.) Scribn.] established only when irrigated with twice average precipitation, but persisted after the irrigation ceased. Cheatgrass (Bromus tectorum L.) and Russian thistle (Salsola kali L.) colonized areas receiving both irrigation and ambient precipitation. Stands with wheatgrasses extracted water more rapidly and depleted soil water to lower levels than cheatgrass-dominated stands. Increases in gravel cover and near-surface gravel concentrations after 5 yr were evidence of the formation of a protective gravel veneer. 44 refs., 8 figs., 2 tabs.

  2. Primordial helium entrained by the hottest mantle plumes

    NASA Astrophysics Data System (ADS)

    Jackson, M. G.; Konter, J. G.; Becker, T. W.

    2017-02-01

    Helium isotopes provide an important tool for tracing early-Earth, primordial reservoirs that have survived in the planet’s interior. Volcanic hotspot lavas, like those erupted at Hawaii and Iceland, can host rare, high 3He/4He isotopic ratios (up to 50 times the present atmospheric ratio, Ra) compared to the lower 3He/4He ratios identified in mid-ocean-ridge basalts that form by melting the upper mantle (about 8Ra; ref. 5). A long-standing hypothesis maintains that the high-3He/4He domain resides in the deep mantle, beneath the upper mantle sampled by mid-ocean-ridge basalts, and that buoyantly upwelling plumes from the deep mantle transport high-3He/4He material to the shallow mantle beneath plume-fed hotspots. One problem with this hypothesis is that, while some hotspots have 3He/4He values ranging from low to high, other hotspots exhibit only low 3He/4He ratios. Here we show that, among hotspots suggested to overlie mantle plumes, those with the highest maximum 3He/4He ratios have high hotspot buoyancy fluxes and overlie regions with seismic low-velocity anomalies in the upper mantle, unlike plume-fed hotspots with only low maximum 3He/4He ratios. We interpret the relationships between 3He/4He values, hotspot buoyancy flux, and upper-mantle shear wave velocity to mean that hot plumes—which exhibit seismic low-velocity anomalies at depths of 200 kilometres—are more buoyant and entrain both high-3He/4He and low-3He/4He material. In contrast, cooler, less buoyant plumes do not entrain this high-3He/4He material. This can be explained if the high-3He/4He domain is denser than low-3He/4He mantle components hosted in plumes, and if high-3He/4He material is entrained from the deep mantle only by the hottest, most buoyant plumes. Such a dense, deep-mantle high-3He/4He domain could remain isolated from the convecting mantle, which may help to explain the preservation of early Hadean (>4.5 billion years ago) geochemical anomalies in lavas sampling this reservoir.

  3. Photic Resetting and Entrainment in CLOCK-Deficient Mice

    PubMed Central

    Dallmann, Robert; DeBruyne, Jason P.; Weaver, David R.

    2012-01-01

    Mice lacking CLOCK protein have a relatively subtle circadian phenotype, including a slightly shorter period in constant darkness, differences in phase resetting after 4-hr light pulses in the early and late night, and a variably advanced phase angle of entrainment in a light-dark (LD) cycle (DeBruyne et al., Neuron 50:465–477, 2006). The present series of experiments was conducted to more fully characterize the circadian phenotype of Clock−/− mice under various lighting conditions. A phase-response curve (PRC) to 4-hour light pulses in free-running mice was conducted; the results confirm that Clock−/− mice exhibit very large phase advances after 4 hrs light pulses in the late subjective night, but have relatively normal responses to light at other phases. The abnormal shape of the PRC to light may explain the tendency of CLOCK-deficient mice to begin activity before lights-out when housed in a 12 hrs light: 12 hrs dark lighting schedule. To assess this relationship further, Clock−/− and wild-type control mice were entrained to skeleton lighting cycles (1L:23D, and 1L:10D:1L:12D). Comparing entrainment under the two types of skeleton photoperiods revealed that exposure to 1 hr light in the morning leads to a phase advance of activity onset (expressed the following afternoon) in Clock−/− mice, but not in the controls. Constant light typically causes an intensity-dependent increase in circadian period in mice, but this did not occur in CLOCK-deficient mice. The failure of Clock−/− mice to respond to the period-lengthening effect of constant light likely results from the increased functional impact of light falling in the phase advance zone of the PRC. Collectively, these experiments reveal that alterations in the response of CLOCK-deficient mice to light in several paradigms are likely due to an imbalance in the shape of the PRC to light. PMID:21921293

  4. Primordial helium entrained by the hottest mantle plumes.

    PubMed

    Jackson, M G; Konter, J G; Becker, T W

    2017-02-16

    Helium isotopes provide an important tool for tracing early-Earth, primordial reservoirs that have survived in the planet's interior. Volcanic hotspot lavas, like those erupted at Hawaii and Iceland, can host rare, high (3)He/(4)He isotopic ratios (up to 50 times the present atmospheric ratio, Ra) compared to the lower (3)He/(4)He ratios identified in mid-ocean-ridge basalts that form by melting the upper mantle (about 8Ra; ref. 5). A long-standing hypothesis maintains that the high-(3)He/(4)He domain resides in the deep mantle, beneath the upper mantle sampled by mid-ocean-ridge basalts, and that buoyantly upwelling plumes from the deep mantle transport high-(3)He/(4)He material to the shallow mantle beneath plume-fed hotspots. One problem with this hypothesis is that, while some hotspots have (3)He/(4)He values ranging from low to high, other hotspots exhibit only low (3)He/(4)He ratios. Here we show that, among hotspots suggested to overlie mantle plumes, those with the highest maximum (3)He/(4)He ratios have high hotspot buoyancy fluxes and overlie regions with seismic low-velocity anomalies in the upper mantle, unlike plume-fed hotspots with only low maximum (3)He/(4)He ratios. We interpret the relationships between (3)He/(4)He values, hotspot buoyancy flux, and upper-mantle shear wave velocity to mean that hot plumes-which exhibit seismic low-velocity anomalies at depths of 200 kilometres-are more buoyant and entrain both high-(3)He/(4)He and low-(3)He/(4)He material. In contrast, cooler, less buoyant plumes do not entrain this high-(3)He/(4)He material. This can be explained if the high-(3)He/(4)He domain is denser than low-(3)He/(4)He mantle components hosted in plumes, and if high-(3)He/(4)He material is entrained from the deep mantle only by the hottest, most buoyant plumes. Such a dense, deep-mantle high-(3)He/(4)He domain could remain isolated from the convecting mantle, which may help to explain the preservation of early Hadean (>4.5 billion years ago

  5. Basal entrainment by Newtonian gravity-driven flows

    NASA Astrophysics Data System (ADS)

    Bates, Belinda; Andreini, Nicolas; Ancey, Christophe

    2016-04-01

    Gravity-driven flows can erode the bed along which they descend and increase their mass by a factor of 10 or more. This process is called basal entrainment. Although documented by field observations and laboratory experiments, it remains poorly understood. We look into this issue by studying eroding dam-break waves. More specifically we would like to determine what happens when a viscous gravity-driven flow generated by releasing a fixed volume of incompressible Newtonian fluid encounters a stationary erodible layer (composed of fluid with the same density and viscosity). Models based on depth-averaged mass and momentum balance equations deal with bed-flow interfaces as shock waves. In contrast, we use an approach involving the long-wave approximation of the Navier-Stokes equations (lubrication theory), and in this context, bed-flow interfaces are acceleration waves that move quickly across thin stationary layers. The incoming flow digs down into the bed, pushing up downstream material, thus advancing the flow front. Extending the method used by Huppert [J. Fluid Mech. 121, 43--58 (1982)] for modelling viscous dam-break waves, we end up with a nonlinear diffusion equation for the flow depth, which is solved numerically. Theory is compared with experimental results. Excellent agreement is found in the limit of low Reynolds numbers (i.e., for flow Reynolds numbers lower than 20) for the front position over time and flow depth profile. The Newtonian model has sometimes been used to describe the flow behaviour of natural materials such as snow and debris suspensions, but the majority of existing approaches rely on more elaborate constitutive equations. So there is no direct application of the results presented here to real flow conditions. Yet, our study sheds light on the mechanisms involved in basal entrainment. We provide evidence that the whole layer of loose material is entrained quickly once the flow makes contact with the erodible layer. As this process occurs

  6. Evaluation of two sterility testing methods for intravenous admixtures.

    PubMed

    Condella, F; Eichelberger, K; Foote, L C; Griffin, R E

    1980-06-01

    The Addi-Chek Quality Control System (Millipore Corporation) and Ivex-2 Filterset (Abbott Laboratories) were evaluated to determine their effectiveness, applicability, and cost as part of a pharmacy quality-control program. Each method was tested using 50 solutions, 25 of which had been contaminated by inoculation with one of five micro-organisms; the other 25 solutions were used as controls. Aseptic technique was used, and procedures were carried out in a laminar air flow hood. Contaminated solutions were blinded from the person performing the tests. Addi-Chek detected contamination in all the inoculated solutions and in three of the uninoculated solutions. The latter may have been a result of adventitious contamination during the testing procedure. Ivex-2 detected contamination in 24 of the 25 inoculated solutions; no other contamination was found. The effectiveness of the methods in detecting low-level microbial contamination appears comparable. Both methods have been shown to be useful in the pharmacy setting, but Ivex-2 could be used to test for contamination when used as an in-line filter at the patient level. Ivex-2 is less expensive and warrants further evaluation in monitoring for microbial contamination during preparation and administration of intravenous solutions.

  7. Chemical stability of an admixture combining ziconotide and bupivacaine during simulated intrathecal administration.

    PubMed

    Shields, David; Montenegro, Rick; Aclan, Jennifer

    2007-10-01

    Objective.  To determine the stability of an admixture combining ziconotide with bupivacaine hydrochloride during simulated intrathecal infusion under laboratory conditions at 37°. Materials and Methods.  An admixture containing ziconotide (25 µg/mL) and bupivacaine hydrochloride (5 mg/mL) was stored in SynchroMed® II pumps at 37° and in control vials at either 37° or 5°. Using high-performance liquid chromatography, drug concentrations were determined from samples obtained at varying intervals during the 30-day study. Results.  After 30 days, pump ziconotide and bupivacaine hydrochloride concentrations measured an average of 86.9% and 99.4% of their initial concentrations, respectively. Control vials displayed similar degradation rates for both drugs. Statistical evaluation of the ziconotide 95% confidence interval indicated that the ziconotide concentration would meet or exceed 90% and 80% of initial concentration for 22 days and 45 days, respectively. Conclusions.  An admixture containing 25 µg/mL ziconotide and 5 mg/mL bupivacaine hydrochloride was 90% stable for 22 days and 80% stable for 45 days (extrapolated) in SynchroMed® II infusion pumps.

  8. Dissecting the genetic structure and admixture of four geographical Malay populations

    PubMed Central

    Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; Janaka de Silva, H.; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R.; Teo, Yik-Ying; Xu, Shuhua

    2015-01-01

    The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%–62%), Proto-Malay (15%–31%), East Asian (4%–16%) and South Asian (3%–34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations. PMID:26395220

  9. Environment-dependent admixture dynamics in a tiger salamander hybrid zone.

    PubMed

    Fitzpatrick, Benjamin M; Shaffer, H Bradley

    2004-06-01

    After an estimated five million years of independent evolution, the barred tiger salamander (Ambystoma tigrinum mavortium) was introduced by bait dealers into the native range of the California tiger salamander (A. californiense). Hybridization and backcrossing have been occurring in central California for 50-60 years, or an estimated 15-30 generations. We studied genetic and ecological factors influencing admixture of these two divergent gene pools by analyzing frequencies of hybrid genotypes in three kinds of breeding habitats: natural vernal pools, ephemeral man-made cattle ponds, and perennial man-made ponds. Perennial ponds tended to have higher frequencies of nonnative alleles than either type of seasonal pond, even in cases where perennial and seasonal ponds are within a few hundred meters. Thus, the hybrid zone has a mosaic structure that depends on pond hydrology or ecology. The presence of some broadly acting constraints on admixture is suggested by linkage disequilibria between physically unlinked molecular markers within ponds. In addition, we found several marker-specific deviations from Hardy-Weinberg equilibrium. One marker showed a consistent deficit of heterozygotes across pond types. Another showed heterozygote deficits only in vernal pools. A third was more likely to have heterozygote excess in ephemeral cattle ponds. These patterns indicate that admixture is influenced by complex genotype-by-environment interactions.

  10. Stability study of azlocillin sodium in glass bottles and PVC bags containing intravenous admixtures.

    PubMed

    Puiggròs Boldú, S; Pujol Cubells, M; Girona Brumós, V; Prat Aixelà, J; Muñoz Juncosa, M

    1995-09-01

    The kinetics of degradation of azlocillin sodium in four intravenous admixtures was investigated at different temperatures. The effect of temperature has been determined and from this data, by applying of Arrhenius-law, the stability of azlocillin sodium at 25 degrees C has been predicted and the t90 was determined. Admixtures containing azlocillin sodium (0.01 g ml-1) were prepared in 0.9% sodium chloride injection, in 5% dextrose solution, in 5% levulose solution and in Ringer's lactate solution. The admixtures were stored at 30 degrees, 40 degrees and 50 degrees C in either polyvinyl chloride bags and glass bottles. The change in the initial azlocillin sodium concentration was related to the type of intravenous solution. No dependence with material of container was found. After 24 hours, the change in the initial concentration of penicillin was less than 10% of the initial concentration in 0.9% sodium chloride and 5% levulose solution. However in Ringer's lactate and 5% glucose solution the t90 was lower. These results were found in agreement with experimental ones obtained at room temperature.

  11. Effect of chemical admixtures on properties of high-calcium fly ash geopolymer

    NASA Astrophysics Data System (ADS)

    Rattanasak, Ubolluk; Pankhet, Kanokwan; Chindaprasirt, Prinya

    2011-06-01

    Owing to the high viscosity of sodium silicate solution, fly ash geopolymer has the problems of low workability and rapid setting time. Therefore, the effect of chemical admixtures on the properties of fly ash geopolymer was studied to overcome the rapid set of the geopolymer in this paper. High-calcium fly ash and alkaline solution were used as starting materials to synthesize the geopolymer. Calcium chloride, calcium sulfate, sodium sulfate, and sucrose at dosages of 1wt% and 2wt% of fly ash were selected as admixtures based on concrete knowledge to improve the properties of the geopolymer. The setting time, compressive strength, and degree of reaction were recorded, and the microstructure was examined. The results show that calcium chloride significantly shortens both the initial and final setting times of the geopolymer paste. In addition, sucrose also delays the final setting time significantly. The degrees of reaction of fly ash in the geopolymer paste with the admixtures are all higher than those of the control paste. This contributes to the obvious increases in compressive strength.

  12. Uncontrolled admixture and loss of genetic diversity in a local Vietnamese pig breed.

    PubMed

    Berthouly-Salazar, Cécile; Thévenon, Sophie; Van, Thu Nhu; Nguyen, Binh Trong; Pham, Lan Doan; Chi, Cuong Vu; Maillard, Jean-Charles

    2012-05-01

    The expansion of intensive livestock production systems in developing countries has increased the introduction of highly productive exotic breeds facilitating indiscriminate crossbreeding with local breeds. In this study, we set out to investigate the genetic status of the Vietnamese Black H'mong pig breed by evaluating (1) genetic diversity and (2) introgression from exotic breeds. Two exotic breeds, namely Landrace and Yorkshire used for crossbreeding, and the H'mong pig population from Ha Giang (HG) province were investigated using microsatellite markers. Within the province, three phenotypes were observed: a White, a Spotted and a Black phenotype. Genetic differentiation between phenotypes was low (0.5-6.1%). The White phenotypes showed intermediate admixture values between exotic breeds and the Black HG population (0.53), indicating a crossbreed status. Management practices were used to predict the rate of private diversity loss due to exotic gene introgressions. After 60 generations, 100% of Black private alleles will be lost. This loss is accelerated if the admixture rate is increased but can be slowed down if the mortality rate (e.g., recruitment rate) is decreased. Our study showed that a large number of markers are needed for accurately identifying hybrid classes for closely related populations. While our estimate of admixture still seems underestimated, genetic erosion can occur very fast even through indiscriminate crossbreeding.

  13. Uncontrolled admixture and loss of genetic diversity in a local Vietnamese pig breed

    PubMed Central

    Berthouly-Salazar, Cécile; Thévenon, Sophie; Van, Thu Nhu; Nguyen, Binh Trong; Pham, Lan Doan; Chi, Cuong Vu; Maillard, Jean-Charles

    2012-01-01

    The expansion of intensive livestock production systems in developing countries has increased the introduction of highly productive exotic breeds facilitating indiscriminate crossbreeding with local breeds. In this study, we set out to investigate the genetic status of the Vietnamese Black H’mong pig breed by evaluating (1) genetic diversity and (2) introgression from exotic breeds. Two exotic breeds, namely Landrace and Yorkshire used for crossbreeding, and the H’mong pig population from Ha Giang (HG) province were investigated using microsatellite markers. Within the province, three phenotypes were observed: a White, a Spotted and a Black phenotype. Genetic differentiation between phenotypes was low (0.5–6.1%). The White phenotypes showed intermediate admixture values between exotic breeds and the Black HG population (0.53), indicating a crossbreed status. Management practices were used to predict the rate of private diversity loss due to exotic gene introgressions. After 60 generations, 100% of Black private alleles will be lost. This loss is accelerated if the admixture rate is increased but can be slowed down if the mortality rate (e.g., recruitment rate) is decreased. Our study showed that a large number of markers are needed for accurately identifying hybrid classes for closely related populations. While our estimate of admixture still seems underestimated, genetic erosion can occur very fast even through indiscriminate crossbreeding. PMID:22837841

  14. Estimating African American admixture proportions by use of population-specific alleles.

    PubMed Central

    Parra, E J; Marcini, A; Akey, J; Martinson, J; Batzer, M A; Cooper, R; Forrester, T; Allison, D B; Deka, R; Ferrell, R E; Shriver, M D

    1998-01-01

    We analyzed the European genetic contribution to 10 populations of African descent in the United States (Maywood, Illinois; Detroit; New York; Philadelphia; Pittsburgh; Baltimore; Charleston, South Carolina; New Orleans; and Houston) and in Jamaica, using nine autosomal DNA markers. These markers either are population-specific or show frequency differences >45% between the parental populations and are thus especially informative for admixture. European genetic ancestry ranged from 6.8% (Jamaica) to 22.5% (New Orleans). The unique utility of these markers is reflected in the low variance associated with these admixture estimates (SEM 1.3%-2.7%). We also estimated the male and female European contribution to African Americans, on the basis of informative mtDNA (haplogroups H and L) and Y Alu polymorphic markers. Results indicate a sex-biased gene flow from Europeans, the male contribution being substantially greater than the female contribution. mtDNA haplogroups analysis shows no evidence of a significant maternal Amerindian contribution to any of the 10 populations. We detected significant nonrandom association between two markers located 22 cM apart (FY-null and AT3), most likely due to admixture linkage disequilibrium created in the interbreeding of the two parental populations. The strength of this association and the substantial genetic distance between FY and AT3 emphasize the importance of admixed populations as a useful resource for mapping traits with different prevalence in two parental populations. PMID:9837836

  15. A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle

    PubMed Central

    Hillis, David M.

    2014-01-01

    Genomic data facilitate opportunities to track complex population histories of divergence and gene flow. We developed a metric, scaled block size (SBS), which uses the nonrecombined block size of introgressed regions of chromosomes to differentiate between recent and ancient types of admixture, and applied it to the reconstruction of admixture in cattle. Cattle are descendants of 2 independently domesticated lineages, taurine and indicine, which diverged more than 200 000 years ago. Several breeds have hybrid ancestry between these divergent lineages. Using 47 506 single-nucleotide polymorphisms, we analyzed the genomic architecture of the ancestry of 1369 individuals. We focused on 4 groups with admixed ancestry, including 2 anciently admixed African breeds (n = 58; n = 43), New World cattle of Spanish origin (n = 51), and known recent hybrids (n = 46). We estimated the ancestry of chromosomal regions for each individual and used the SBS metric to differentiate the timing of admixture among groups and among individuals within groups. By comparing SBS values of test individuals with standards with known recent hybrid ancestry, we were able to differentiate individuals of recent hybrid origin from other admixed cattle. We also estimated ancestry at the chromosomal scale. The X chromosome exhibits reduced indicine ancestry in recent hybrid, New World, and western African cattle, with virtually no evidence of indicine ancestry in New World cattle. PMID:24510946

  16. Effects of lithium nitrate admixture on early-age cement hydration

    SciTech Connect

    Millard, M.J. Kurtis, K.E.

    2008-04-15

    Although the benefits of lithium admixtures for mitigation of alkali-silica reaction (ASR) have been well documented, the potential ancillary effects of lithium compounds on cement and concrete remain largely uncharacterized. To examine the effects of the most common lithium admixture - lithium nitrate - on early-age behavior, the admixture was introduced at dosages of 0% to 400% of the recommended dosage to six cements of varying composition and to a cement-fly ash blend. Behavior was examined by isothermal calorimetry and measurements of chemical shrinkage, autogenous shrinkage, and setting time. Results indicate that lithium nitrate accelerates the early hydration of most cements but may retard hydration after 24 h. In the lowest alkali cement tested, set times were shortened in the presence of lithium nitrate by 15-22%. Higher dosages appeared to increase autogenous shrinkage after 40 days. The replacement of cement by Class F fly ash at 20% by weight appeared to diminish the early acceleration effects, but later hydration retardation and autogenous shrinkage were still observed.

  17. Dissecting the genetic structure and admixture of four geographical Malay populations.

    PubMed

    Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; de Silva, H Janaka; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R; Teo, Yik-Ying; Xu, Shuhua

    2015-09-23

    The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%-62%), Proto-Malay (15%-31%), East Asian (4%-16%) and South Asian (3%-34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations.

  18. Chemical stability of ziconotide-clonidine hydrochloride admixtures with and without morphine sulfate during simulated intrathecal administration.

    PubMed

    Shields, David; Montenegro, Rick

    2007-10-01

    Objective.  To determine the stability of ziconotide-clonidine hydrochloride admixtures with and without morphine sulfate during simulated intrathecal infusion under laboratory conditions at 37°. Materials and Methods.  Admixtures of ziconotide (25 µg/mL) and clonidine hydrochloride (2 mg/mL) with and without morphine sulfate (35 mg/mL) were stored in Medtronic SynchroMed® II pumps at 37°. Pumps were sampled immediately after filling and at four additional time points over the course of 28 (ziconotide-clonidine hydrochloride admixture) or 20 (ziconotide-clonidine hydrochloride-morphine sulfate admixture) days. Drug concentrations were determined using high-performance liquid chromatography. Results.  Ziconotide concentration exceeded 97% of initial at all time points when combined with clonidine alone; statistical evaluation indicated that both ziconotide and clonidine concentrations would remain above 90% of initial for more than 60 days. When compounded with both clonidine and morphine, ziconotide and clonidine concentrations declined; statistical evaluation indicated that the ziconotide concentration was 70% of initial after 20 days, and that clonidine would remain 90% stable for 42 days. Morphine was stable in the presence of ziconotide and clonidine. Conclusions.  A ziconotide-clonidine admixture was 90% stable for 60 days (extrapolated), and a ziconotide-clonidine-morphine admixture was 70% stable for 20 days.

  19. Entrainment of Solid Particles from a Fluidized-Bed Cyclone Chamber

    NASA Astrophysics Data System (ADS)

    Pitsukha, E. A.; Teplitskii, Yu. S.; Borodulya, V. A.

    2016-09-01

    An experimental study has been made of the entrainment of crushed-corn particles of diameter d = 0.88 mm from a fluidized bed with the vortex organization of an over-bed space. The dependence of the entrainment rate on the characteristics of the fluidized bed and the cyclone chamber has been established.

  20. Spontaneous tempo and rhythmic entrainment in a bonobo (Pan paniscus).

    PubMed

    Large, Edward W; Gray, Patricia M

    2015-11-01

    The emergence of speech and music in the human species represent major evolutionary transitions that enabled the use of complex, temporally structured acoustic signals to coordinate social interaction. While the fundamental capacity for temporal coordination with complex acoustic signals has been shown in a few distantly related species, the extent to which nonhuman primates exhibit sensitivity to auditory rhythms remains controversial. In Experiment 1, we assessed spontaneous motor tempo and tempo matching in a bonobo (Pan paniscus), in the context of a social drumming interaction. In Experiment 2, the bonobo spontaneously entrained and synchronized her drum strikes within a range around her spontaneous motor tempo. Our results are consistent with the hypothesis that the evolution of acoustic communication builds upon fundamental neurodynamic mechanisms that can be found in a wide range of species, and are recruited for social interactions.

  1. Phase-selective entrainment of nonlinear oscillator ensembles

    PubMed Central

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z.; Li, Jr-Shin

    2016-01-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information. PMID:26988313

  2. Phase-selective entrainment of nonlinear oscillator ensembles

    SciTech Connect

    Zlotnik, Anatoly V.; Nagao, Raphael; Kiss, Istvan Z.; Li, Jr -Shin

    2016-03-18

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. As a result, the experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.

  3. Phase-selective entrainment of nonlinear oscillator ensembles

    NASA Astrophysics Data System (ADS)

    Zlotnik, Anatoly; Nagao, Raphael; Kiss, István Z.; Li-Shin, Jr.

    2016-03-01

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups into spatiotemporal patterns with multiple phase clusters. The experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.

  4. Entrainment of heterogeneous glycolytic oscillations in single cells

    NASA Astrophysics Data System (ADS)

    Gustavsson, Anna-Karin; Adiels, Caroline B.; Mehlig, Bernhard; Goksör, Mattias

    2015-03-01

    Cell signaling, gene expression, and metabolism are affected by cell-cell heterogeneity and random changes in the environment. The effects of such fluctuations on cell signaling and gene expression have recently been studied intensively using single-cell experiments. In metabolism heterogeneity may be particularly important because it may affect synchronisation of metabolic oscillations, an important example of cell-cell communication. This synchronisation is notoriously difficult to describe theoretically as the example of glycolytic oscillations shows: neither is the mechanism of glycolytic synchronisation understood nor the role of cell-cell heterogeneity. To pin down the mechanism and to assess its robustness and universality we have experimentally investigated the entrainment of glycolytic oscillations in individual yeast cells by periodic external perturbations. We find that oscillatory cells synchronise through phase shifts and that the mechanism is insensitive to cell heterogeneity (robustness) and similar for different types of external perturbations (universality).

  5. Turbulent mixing and entrainment in a gravity current

    SciTech Connect

    Ecke, Robert E; Odier, Philippe; Chen, Jun

    2010-01-01

    We present an experimental study of the mixing processes in a gravity current. The turbulent transport of momentum and buoyancy can be described in a very direct and compact form by a Prandtl mixing length model: the turbulent vertical fluxes of momentum and buoyancy are found to scale quadratically with the vertical mean gradients of velocity and density. The scaling coefficient is the square of the mixing lenth, approximately constant over the mixing zone of the stratified shear layer. We show how, in different flow configurations, this length can be related to the shear length of the flow ({var_epsilon}/{partial_derivative}{sub z}u{sup 3}){sup 1/2}. We also study the fluctuations of the momentum and density turbulent fluxes, showing how they relate to the mixing phenomena, and to the entrainment/detrainment balance.

  6. Right Heart Vortex Entrainment Volume and Right Ventricular Diastolic Dysfunction

    NASA Astrophysics Data System (ADS)

    Browning, James; Hertzberg, Jean; Fenster, Brett; Schroeder, Joyce

    2014-11-01

    Recent advances in cardiac magnetic resonance imaging (CMR) have allowed for the 3-dimensional characterization of blood flow in the right ventricle (RV) and right atrium (RA). In this study, we investigate and quantify differences in the characteristics of coherent rotating flow structures (vortices) in the RA and RV between subjects with right ventricular diastolic dysfunction (RVDD) and normal controls. Fifteen RVDD subjects and 10 age-matched controls underwent same day 3D time resolved CMR and echocardiography. Echocardiography was used to determine RVDD stage as well as pulmonary artery systolic pressure (PASP). CMR data was used for RA and RV vortex quantification and visualization during early and late ventricular diastole. RA and RV vortex entrainment volume is quantified and visualized using the Lambda-2 criterion, and the results are compared between healthy subjects and those with RVDD. The resulting trends are discussed and hypotheses are presented regarding differences in vortex characteristics between healthy and RVDD subjects cohorts.

  7. Near-field entrainment in black smoker plumes

    NASA Astrophysics Data System (ADS)

    Smith, J. E.; Germanovich, L. N.; Lowell, R. P.

    2013-12-01

    In this work, we study the entrainment rate of the ambient fluid into a plume in the extreme conditions of hydrothermal venting at ocean floor depths that would be difficult to reproduce in the laboratory. Specifically, we investigate the flow regime in the lower parts of three black smoker plumes in the Main Endeavour Field on the Juan de Fuca Ridge discharging at temperatures of 249°C, 333°C, and 336°C and a pressure of 21 MPa. Such flow conditions are typical for ocean floor hydrothermal venting but would be difficult to reproduce in the laboratory. The centerline temperature was measured at several heights in the plume above the orifice. Using a previously developed turbine flow meter, we also measured the mean flow velocity at the orifice. Measurements were conducted during dives 4452 and 4518 on the submersible Alvin. Using these measurements, we obtained a range of 0.064 - 0.068 for values of the entrainment coefficient α, which is assumed constant near the orifice. This is half the value of α ≈ 0.12 - 0.13 that would be expected for plume flow regimes based on the existing laboratory results and field measurements in lower temperature and pressure conditions. In fact, α = 0.064 - 0.068 is even smaller than the value of α ≈ 0.075 characteristic of jet flow regimes and appears to be the lowest reported in the literature. Assuming that the mean value α = 0.066 is typical for hydrothermal venting at ocean floor depths, we then characterized the flow regimes of 63 black smoker plumes located on the Endeavor Segment of the Juan de Fuca Ridge. Work with the obtained data is ongoing, but current results indicate that approximately half of these black smokers are lazy in the sense that their plumes exhibit momentum deficits compared to the pure plume flow that develops as the plume rises. The remaining half produces forced plumes that show the momentum excess compared to the pure plumes. The lower value of the entrainment coefficient has important

  8. Phase-selective entrainment of nonlinear oscillator ensembles

    DOE PAGES

    Zlotnik, Anatoly V.; Nagao, Raphael; Kiss, Istvan Z.; ...

    2016-03-18

    The ability to organize and finely manipulate the hierarchy and timing of dynamic processes is important for understanding and influencing brain functions, sleep and metabolic cycles, and many other natural phenomena. However, establishing spatiotemporal structures in biological oscillator ensembles is a challenging task that requires controlling large collections of complex nonlinear dynamical units. In this report, we present a method to design entrainment signals that create stable phase patterns in ensembles of heterogeneous nonlinear oscillators without using state feedback information. We demonstrate the approach using experiments with electrochemical reactions on multielectrode arrays, in which we selectively assign ensemble subgroups intomore » spatiotemporal patterns with multiple phase clusters. As a result, the experimentally confirmed mechanism elucidates the connection between the phases and natural frequencies of a collection of dynamical elements, the spatial and temporal information that is encoded within this ensemble, and how external signals can be used to retrieve this information.« less

  9. Global Entrainment of Transcriptional Systems to Periodic Inputs

    PubMed Central

    Russo, Giovanni; di Bernardo, Mario; Sontag, Eduardo D.

    2010-01-01

    This paper addresses the problem of providing mathematical conditions that allow one to ensure that biological networks, such as transcriptional systems, can be globally entrained to external periodic inputs. Despite appearing obvious at first, this is by no means a generic property of nonlinear dynamical systems. Through the use of contraction theory, a powerful tool from dynamical systems theory, it is shown that certain systems driven by external periodic signals have the property that all their solutions converge to a fixed limit cycle. General results are proved, and the properties are verified in the specific cases of models of transcriptional systems as well as constructs of interest in synthetic biology. A self-contained exposition of all needed results is given in the paper. PMID:20418962

  10. Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation Channel

    SciTech Connect

    Pearson, Walter H.; Kohn, Nancy P.; Skalski, J. R.

    2006-09-30

    Proposed dredging of the Columbia River has raised concerns about related impacts on Dungeness crab in the Columbia River Estuary (CRE). This study follows two major efforts, sponsored by the Portland District of the U. S. Army Corps of Engineers (USACE) to quantify the number of crabs entrained by a hopper dredge working in the CRE. From June 2002 through September 2002, Pacific Northwest National Laboratory (PNNL) conducted direct measurements of crab entrainment in the CRE from the mouth of the Columbia River (MCR, river mile -3 to +3) upriver as far as Miller Sands (river mile 21 to 24). These studies constituted a major step in quantifying crab entrainment in the CRE, and allowed statistically bounded projections of adult equivalent loss (AEL) for Dungeness crab populations under a range of future construction dredging and maintenance dredging scenarios (Pearson et al. 2002, 2003). In 2004, PNNL performed additional measurements to improve estimates of crab entrainment at Desdemona Shoals and at Flavel Bar, a reach near Astoria that had not been adequately sampled in 2002 (Figure 1). The 2004 data were used to update the crab loss projections for channel construction to 43 ft MLLW. In addition, a correlation between bottom salinity and adult (age 2+ and 3+, >100 mm carapace width) crab entrainment was developed using 2002 data, and elaborated upon with the 2004 data. This crab salinity model was applied to forecasting seasonal (monthly) entrainment rates and AEL using seasonal variations in salinity (Pearson et al. 2005). In the previous studies, entrainment rates in Desdemona Shoals were more variable than in any of the other reaches. Pearson et al. (2005) concluded that ?the dynamics behind the variable entrainment rates at Desdemona Shoals are not fully understood,? as well as finding that juvenile crab entrainment was not significantly correlated with salinity as it was for older crab. The present study was undertaken to address the question of whether the

  11. Gravel Particles Entrainment and Deposition under Unsteady Flow Conditions

    NASA Astrophysics Data System (ADS)

    Franca, M. J.; Altinakar, M. S.; Hassan, M. A.; Qu, Z.

    2014-12-01

    Spatial patterns of particle entrainment and deposition under unsteady flow regime were examined using coloured particles. The impact of three different basic hydrograph shapes (triangular, rising and falling) on the bedload rate of a gravel-bedded channel is experimentally analysed. The experiments were performed in a 16.8 m long glassed-walls tilting flume, with a 60 cm wide and 80 cm deep rectangular section, at the École Polytechnique Fédérale de Lausanne. A mobile 10 cm deep layer reach was made in the bed channel from x = 4.9 m to x = 14.1 m with a relatively uniform gravel of size 3 to 8 mm. A sediment trap is located immediately downstream the movable bed reach and no sediment feeding were imposed upstream. Eight 0.70 m long stripes of coloured sediments were laid over the natural gravel starting immediately upstream of the sediment trap. The thickness of the coloured gravel layer was about 3 to 4 cm (approximately 5 to 7 times D50). The total length of the reach covered with the coloured sediments was 5.6 m. After the experiments, approximately the top 2 cm of the gravel bed was sampled by strips of 0.175 m in the longitudinal direction, over the entire reach covered with sediments. These samples were then separated into gravels of different colours, and the dry weight of the sediments of each sample was measured. In addition, the gravel accumulated in the sediment trap was also separated into different colour groups, weighed separately. From the combined evaluation of the sediments trapped downstream and the sediments sampled throughout the channel, spatial patterns of entrainment and deposition rates are inferred. With this, back calculation of the depth of the active layer is performed and Wilcok's formulations on tracer dispersion and estimation of sediment transport is tested and discussed.

  12. Ethanol consumption in mice: relationships with circadian period and entrainment

    PubMed Central

    Trujillo, Jennifer L.; Do, David T.; Grahame, Nicholas J.; Roberts, Amanda J.; Gorman, Michael R.

    2011-01-01

    A functional connection between the circadian timing system and alcohol consumption is suggested by multiple lines of converging evidence. Ethanol consumption perturbs physiological rhythms in hormone secretion, sleep and body temperature, and conversely, genetic and environmental perturbations of the circadian system can alter alcohol intake. A fundamental property of the circadian pacemaker, the endogenous period of its cycle under free-running conditions, was previously shown to differ between selectively bred High- (HAP) and Low- (LAP) Alcohol Preferring replicate 1 mice. To test whether there is a causal relationship between circadian period and ethanol intake, we induced experimental, rather than genetic, variations in free-running period. Male inbred C57Bl/6J mice and replicate 2 male and female HAP2 and LAP2 mice were entrained to light:dark cycles of 26 h or 22 h or remained in a standard 24 h cycle. Upon discontinuation of the light:dark cycle, experimental animals exhibited longer and shorter free-running periods, respectively. Despite robust effects on circadian period and clear circadian rhythms in drinking, these manipulations failed to alter the daily ethanol intake of the inbred strain or selected lines. Likewise, driving the circadian system at long and short periods produced no change in alcohol intake. In contrast with replicate 1 HAP and LAP lines, there was no difference in free-running period between ethanol naïve HAP2 and LAP2 mice. HAP2 mice, however, were significantly more active than LAP2 mice as measured by general home-cage movement and wheel running, a motivated behavior implicating a selection effect on reward systems. Despite a marked circadian regulation of drinking behavior, the free-running and entrained period of the circadian clock does not determine daily ethanol intake. PMID:20880659

  13. A neuropeptide speeds circadian entrainment by reducing intercellular synchrony

    PubMed Central

    An, Sungwon; Harang, Rich; Meeker, Kirsten; Granados-Fuentes, Daniel; Tsai, Connie A.; Mazuski, Cristina; Kim, Jihee; Doyle, Francis J.; Petzold, Linda R.; Herzog, Erik D.

    2013-01-01

    Shift work or transmeridian travel can desynchronize the body's circadian rhythms from local light–dark cycles. The mammalian suprachiasmatic nucleus (SCN) generates and entrains daily rhythms in physiology and behavior. Paradoxically, we found that vasoactive intestinal polypeptide (VIP), a neuropeptide implicated in synchrony among SCN cells, can also desynchronize them. The degree and duration of desynchronization among SCN neurons depended on both the phase and the dose of VIP. A model of the SCN consisting of coupled stochastic cells predicted both the phase- and the dose-dependent response to VIP and that the transient phase desynchronization, or “phase tumbling”, could arise from intrinsic, stochastic noise in small populations of key molecules (notably, Period mRNA near its daily minimum). The model also predicted that phase tumbling following brief VIP treatment would accelerate entrainment to shifted environmental cycles. We tested this using a prepulse of VIP during the day before a shift in either a light cycle in vivo or a temperature cycle in vitro. Although VIP during the day does not shift circadian rhythms, the VIP pretreatment approximately halved the time required for mice to reentrain to an 8-h shifted light schedule and for SCN cultures to reentrain to a 10-h shifted temperature cycle. We conclude that VIP below 100 nM synchronizes SCN cells and above 100 nM reduces synchrony in the SCN. We show that exploiting these mechanisms that transiently reduce cellular synchrony before a large shift in the schedule of daily environmental cues has the potential to reduce jet lag. PMID:24167276

  14. A neuropeptide speeds circadian entrainment by reducing intercellular synchrony.

    PubMed

    An, Sungwon; Harang, Rich; Meeker, Kirsten; Granados-Fuentes, Daniel; Tsai, Connie A; Mazuski, Cristina; Kim, Jihee; Doyle, Francis J; Petzold, Linda R; Herzog, Erik D

    2013-11-12

    Shift work or transmeridian travel can desynchronize the body's circadian rhythms from local light-dark cycles. The mammalian suprachiasmatic nucleus (SCN) generates and entrains daily rhythms in physiology and behavior. Paradoxically, we found that vasoactive intestinal polypeptide (VIP), a neuropeptide implicated in synchrony among SCN cells, can also desynchronize them. The degree and duration of desynchronization among SCN neurons depended on both the phase and the dose of VIP. A model of the SCN consisting of coupled stochastic cells predicted both the phase- and the dose-dependent response to VIP and that the transient phase desynchronization, or "phase tumbling", could arise from intrinsic, stochastic noise in small populations of key molecules (notably, Period mRNA near its daily minimum). The model also predicted that phase tumbling following brief VIP treatment would accelerate entrainment to shifted environmental cycles. We tested this using a prepulse of VIP during the day before a shift in either a light cycle in vivo or a temperature cycle in vitro. Although VIP during the day does not shift circadian rhythms, the VIP pretreatment approximately halved the time required for mice to reentrain to an 8-h shifted light schedule and for SCN cultures to reentrain to a 10-h shifted temperature cycle. We conclude that VIP below 100 nM synchronizes SCN cells and above 100 nM reduces synchrony in the SCN. We show that exploiting these mechanisms that transiently reduce cellular synchrony before a large shift in the schedule of daily environmental cues has the potential to reduce jet lag.

  15. Out-of-synchrony speech entrainment in developmental dyslexia.

    PubMed

    Molinaro, Nicola; Lizarazu, Mikel; Lallier, Marie; Bourguignon, Mathieu; Carreiras, Manuel

    2016-08-01

    Developmental dyslexia is a reading disorder often characterized by reduced awareness of speech units. Whether the neural source of this phonological disorder in dyslexic readers results from the malfunctioning of the primary auditory system or damaged feedback communication between higher-order phonological regions (i.e., left inferior frontal regions) and the auditory cortex is still under dispute. Here we recorded magnetoencephalographic (MEG) signals from 20 dyslexic readers and 20 age-matched controls while they were listening to ∼10-s-long spoken sentences. Compared to controls, dyslexic readers had (1) an impaired neural entrainment to speech in the delta band (0.5-1 Hz); (2) a reduced delta synchronization in both the right auditory cortex and the left inferior frontal gyrus; and (3) an impaired feedforward functional coupling between neural oscillations in the right auditory cortex and the left inferior frontal regions. This shows that during speech listening, individuals with developmental dyslexia present reduced neural synchrony to low-frequency speech oscillations in primary auditory regions that hinders higher-order speech processing steps. The present findings, thus, strengthen proposals assuming that improper low-frequency acoustic entrainment affects speech sampling. This low speech-brain synchronization has the strong potential to cause severe consequences for both phonological and reading skills. Interestingly, the reduced speech-brain synchronization in dyslexic readers compared to normal readers (and its higher-order consequences across the speech processing network) appears preserved through the development from childhood to adulthood. Thus, the evaluation of speech-brain synchronization could possibly serve as a diagnostic tool for early detection of children at risk of dyslexia. Hum Brain Mapp 37:2767-2783, 2016. © 2016 Wiley Periodicals, Inc.

  16. The effect of entrainment on the timing of periodic eye movements.

    PubMed

    Richardson, Brian A; Balasubramaniam, Ramesh

    2010-01-18

    We performed an experiment in which eight healthy individuals made periodic eye movements at five pacing interval conditions (500 ms, 750 ms, 1000 ms, 1250 ms, and 1500 ms). Three methods of entrainment were used in the synchronization phase: saccade, continuous pursuit and discontinuous pursuit. The stimulus train was extinguished and in the continuation phase, subjects made saccadic eye movements at the entrained movement frequencies between two static targets. Using the Wing-Kristofferson model, clock and motor variance were extracted from the time series of continuation trials for all three entrainment conditions. Our results revealed a main effect of time interval on total variance clock variance (as predicted by Weber's law) and on motor variance. We also report that the pursuit entrainment conditions resulted in and mean duration and variance to the saccade entrainment. These results suggest that the neural networks recruited to support a periodic motor timing task depend on the method used to establish the temporal reference.

  17. Experimental study of near-field entrainment of moderately overpressured jets

    USGS Publications Warehouse

    Solovitz, S.A.; Mastin, L.G.; Saffaraval, F.

    2011-01-01

    Particle image velocimetry (PIV) experiments have been conducted to study the velocity flow fields in the developing flow region of high-speed jets. These velocity distributions were examined to determine the entrained mass flow over a range of geometric and flow conditions, including overpressured cases up to an overpressure ratio of 2.83. In the region near the jet exit, all measured flows exhibited the same entrainment up until the location of the first shock when overpressured. Beyond this location, the entrainment was reduced with increasing overpressure ratio, falling to approximately 60 of the magnitudes seen when subsonic. Since entrainment ratios based on lower speed, subsonic results are typically used in one-dimensional volcanological models of plume development, the current analytical methods will underestimate the likelihood of column collapse. In addition, the concept of the entrainment ratio normalization is examined in detail, as several key assumptions in this methodology do not apply when overpressured.

  18. Entrainment due to turbulent shear flow at the interface of a stably stratified fluid

    NASA Astrophysics Data System (ADS)

    Narimousa, S.; Long, R. R.; Kitaigorodskii, S. A.

    1986-01-01

    The entrainment rates of a two-layer fluid system and a linearly stratified system are investigated. The generation of turbulent shear flow using the disk pump apparatus of Odell and Kovasznay (1971) is described. The salinity distributions, deepening of the mixed layer, and mean velocity of the mixed layer are measured; the equation for calculating friction velocity is provided. The entrainment rates are analyzed in terms of friction velocity and the mean velocity of the mixed layer; it is observed that the entrainment rates of the two-layer system and the stratified system are similar. The power-law dependence of entrainment rates on Richardson number is examined. The entrainment rates for the two systems are compared with previous data and good correlation is attained.

  19. Inhomogeneity of action potential waveshape assists frequency entrainment of cardiac pacemaker cells.

    PubMed

    Cloherty, S L; Lovell, N H; Celler, B G; Dokos, S

    2001-10-01

    In this paper, we have employed ionic models of sinoatrial node cells to investigate the synchronization of a pair of coupled cardiac pacemaker cells from central and peripheral regions of the sinoatrial node. The free-running cycle length of the cell models was perturbed using two independent techniques and the minimum coupling conductance required to achieve frequency entrainment was used to assess the relative ease with which various cell pairs achieve entrainment. The factors effecting entrainment were further investigated using single-cell models paced with an artificial biphasic coupling current. Our simulation results suggest that dissimilar cell types, those with largely different upstroke velocities entrain more easily, that is, they require less coupling conductance to achieve 1:1 frequency entrainment. We, therefore, propose that regional variation in action-potential waveshape within the sinoatrial node assists frequency synchronization in vivo.

  20. On Air Shutter for Cold Storage Room

    NASA Astrophysics Data System (ADS)

    Fukuhara, Isamu; Tsuji, Katsuhiko

    Air curtains are frequently placed at doorway of cold storage room or freezing chamber. As an opening of jet flow in these air curtains is relatively narrow and speed of jet flow is fast, air entrained from surroundings increases in quantity. Therefore, we consider that jet flow with narrow opening can not effectively isolate inside air from the external atmosphere, but the one with relatively wide opening can decrease air entrained from surroundings. Then, when air curtain which has a wide opening (we call it air shutter) is installed at cold storage room, and isolating performances of air shutter are compared with the air curtain. First, as various conditions can be easily changed in numerical calculation, we compare a velocity and temperature field in cold storage room under these conditions when velocity of jet flow is changed by using numerical method. Second, we measure a temperature and velocity distribution in an actual cold storage room under three conditions (air shutter operates, air curtain operates and no operation). From these results, it was found that air shutter is more efficient than air curtain.

  1. The performative pleasure of imprecision: a diachronic study of entrainment in music performance

    PubMed Central

    Geeves, Andrew; McIlwain, Doris J.; Sutton, John

    2014-01-01

    This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance. PMID:25400567

  2. The performative pleasure of imprecision: a diachronic study of entrainment in music performance.

    PubMed

    Geeves, Andrew; McIlwain, Doris J; Sutton, John

    2014-01-01

    This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance.

  3. On the pollutant removal, dispersion, and entrainment over two-dimensional idealized street canyons

    NASA Astrophysics Data System (ADS)

    Liu, Chun-Ho; Wong, Colman C. C.

    2014-01-01

    Pollutant dispersion over urban areas is not that well understood, in particular at the street canyon scale. This study is therefore conceived to examine how urban morphology modifies the pollutant removal, dispersion, and entrainment over urban areas. An idealized computational domain consisting of 12 two-dimensional (2D) identical street canyons of unity aspect ratio is employed. The large-eddy simulation (LES) is used to calculate the turbulent flows and pollutant transport in the urban boundary layer (UBL). An area source of uniform pollutant concentration is applied on the ground of the first street canyon. A close examination on the roof-level turbulence reveals patches of low-speed air masses in the streamwise flows and narrow high-speed downdrafts in the shear layer. Different from the flows over a smooth surface, the turbulence intensities are peaked near the top of the building roughness. The pollutant is rather uniformly distributed inside a street canyon but disperses quickly in the UBL over the buildings. Partitioning the vertical pollutant flux into its mean and turbulent components demystifies that the pollutant removal is mainly governed by turbulence. Whereas, mean wind carries pollutant into and out of a street canyon simultaneously. In addition to wind speed promotion, turbulent mixing is thus required to dilute the ground-level pollutants, which are then removed from the street canyon to the UBL. Atmospheric flows slow down rapidly after the leeward buildings, leading to updrafts carrying pollutants away from the street canyons (the basic pollutant removal mechanism).

  4. Flow Dynamics and Sediment Entrainment in Natural Turbidity Currents Inferred from Numerical Modeling

    NASA Astrophysics Data System (ADS)

    Traer, M. M.; Hilley, G. E.; Fildani, A.

    2009-12-01

    Submarine turbidity currents derive their momentum from gravity acting upon the density contrast between sediment-laden and clear water, and so unlike fluvial systems, the dynamics of such flows are inextricably linked to the rates at which they deposit and entrain sediment. We have analyzed the sensitivity of the growth and maintenance of turbidity currents to sediment entrainment and deposition using the layer-averaged equations of conservation of fluid and sediment mass, and conservation of momentum and turbulent kinetic energy. Our model results show that the dynamics of turbidity currents are extremely sensitive to the functional form and empirical constants of the relationship between sediment entrainment and friction velocity. Data on the relationship between sediment entrainment and friction velocity for submarine density flows are few and as a result, entrainment formulations are populated with data from sub-aerial flows not driven by the density contrast between clear and turbid water. If we entertain the possibility that sediment entrainment in sub-aerial rivers is different than in dense underflows, flow parameters such as velocity, height, and concentration were found nearly impossible to predict beyond a few hundred meters based on the limited laboratory data available that constrain the sediment entrainment process in turbidity currents. The sensitivity of flow dynamics to the functional relationship between friction velocity and sediment entrainment indicates that independent calibration of a sediment entrainment law in the submarine environment is necessary to realistically predict the dynamics of these flows and the resulting patterns of erosion and deposition. To calibrate such a relationship, we have developed an inverse methodology that utilizes existing submarine channel morphology as a means of constraining the sediment entrainment function parameters. We use a Bayesian Metropolis-Hastings sampler to determine the sediment entrainment

  5. Combined air and water pollution control system

    NASA Technical Reports Server (NTRS)

    Wolverton, Billy C. (Inventor); Jarrell, Lamont (Inventor)

    1990-01-01

    A bioaquatic air pollution control system for controlling both water and atmospheric pollution is disclosed. The pollution control system includes an exhaust for directing polluted gases out of a furnace and a fluid circulating system which circulates fluid, such as waste water, from a source, past the furnace where the fluid flow entrains the pollutants from the furnace. The combined fluid and pollutants are then directed through a rock/plant/microbial filtering system. A suction pump pumps the treated waste water from the filter system past the exhaust to again entrain more pollutants from the furnace where they are combined with the fluid (waste water) and directed to the filter system.

  6. Fish entrainment rates through towboat propellers in the Upper Mississippi and Illinois rivers

    USGS Publications Warehouse

    Jack, Killgore K.; Miranda, L.E.; Murphy, C.E.; Wolff, D.M.; Hoover, J.J.; Keevin, T.M.; Maynord, S.T.; Cornish, M.A.

    2011-01-01

    Aspecially designed netwas used to study fish entrainment and injury through towboat propellers in 13 pools of the Upper Mississippi and Illinois rivers. The net was attached to the stern of a 48.8-m-long towboat with twin propellers (in Kort propulsion nozzles), and sampling typically took place while the towboat pushed 15 loaded barges upstream at a time. In total, 254 entrainment samples over 894 km of the 13 study pools were collected. The sampling efforts produced 16,005 fish representing 15 families and at least 44 species; fish ranged in total length from 3 to 123 cm, but only 12.5-cm or longer fish were analyzed because smaller fish could escape through the mesh of the trawl. Clupeidae (68% of total catch) and Sciaenidae (21%) were the dominant families. We detected no effects of towboat operation variables (speed and engine [i.e., propeller] revolutions per minute [RPM]) on entrainment rate (i.e., fish/km), but entrainment rate showed a wedge-shaped distribution relative to hydraulic and geomorphic characteristics of the channel. Entrainment rate was low (30 fish/km). Although total entrainment rate was not related to engine RPM, the probability of being struck by a propeller increased with fish length and engine RPM. Limits on engine RPM in narrow, shallow, and sluggish reaches could reduce entrainment impact, particularly for large-bodied fish. ?? American Fisheries Society 2011.

  7. Unscreened Water-Diversion Pipes Pose an Entrainment Risk to the Threatened Green Sturgeon, Acipenser medirostris

    PubMed Central

    Mussen, Timothy D.; Cocherell, Dennis; Poletto, Jamilynn B.; Reardon, Jon S.; Hockett, Zachary; Ercan, Ali; Bandeh, Hossein; Kavvas, M. Levent; Cech, Joseph J.; Fangue, Nann A.

    2014-01-01

    Over 3,300 unscreened agricultural water diversion pipes line the levees and riverbanks of the Sacramento River (California) watershed, where the threatened Southern Distinct Population Segment of green sturgeon, Acipenser medirostris, spawn. The number of sturgeon drawn into (entrained) and killed by these pipes is greatly unknown. We examined avoidance behaviors and entrainment susceptibility of juvenile green sturgeon (35±0.6 cm mean fork length) to entrainment in a large (>500-kl) outdoor flume with a 0.46-m-diameter water-diversion pipe. Fish entrainment was generally high (range: 26–61%), likely due to a lack of avoidance behavior prior to entering inescapable inflow conditions. We estimated that up to 52% of green sturgeon could be entrained after passing within 1.5 m of an active water-diversion pipe three times. These data suggest that green sturgeon are vulnerable to unscreened water-diversion pipes, and that additional research is needed to determine the potential impacts of entrainment mortality on declining sturgeon populations. Data under various hydraulic conditions also suggest that entrainment-related mortality could be decreased by extracting water at lower diversion rates over longer periods of time, balancing agricultural needs with green sturgeon conservation. PMID:24454967

  8. Neurobiological foundations of neurologic music therapy: rhythmic entrainment and the motor system

    PubMed Central

    Thaut, Michael H.; McIntosh, Gerald C.; Hoemberg, Volker

    2015-01-01

    Entrainment is defined by a temporal locking process in which one system’s motion or signal frequency entrains the frequency of another system. This process is a universal phenomenon that can be observed in physical (e.g., pendulum clocks) and biological systems (e.g., fire flies). However, entrainment can also be observed between human sensory and motor systems. The function of rhythmic entrainment in rehabilitative training and learning was established for the first time by Thaut and colleagues in several research studies in the early 1990s. It was shown that the inherent periodicity of auditory rhythmic patterns could entrain movement patterns in patients with movement disorders (see for a review: Thaut et al., 1999). Physiological, kinematic, and behavioral movement analysis showed very quickly that entrainment cues not only changed the timing of movement but also improved spatial and force parameters. Mathematical models have shown that anticipatory rhythmic templates as critical time constraints can result in the complete specification of the dynamics of a movement over the entire movement cycle, thereby optimizing motor planning and execution. Furthermore, temporal rhythmic entrainment has been successfully extended into applications in cognitive rehabilitation and speech and language rehabilitation, and thus become one of the major neurological mechanisms linking music and rhythm to brain rehabilitation. These findings provided a scientific basis for the development of neurologic music therapy. PMID:25774137

  9. Fish and opossum shrimp entrainment in the Mt. Elbert Pumped-Storage Power Plant

    SciTech Connect

    Maiolie, M.A.

    1987-01-01

    Impacts of operating the Mt. Elbert Pumped-Storage Power Plant on fish and opossum shrimp (mysis relicta) were investigated from 1981 to 1985 at Twin Lakes, Colorado to determine any negative effects on the Twin Lakes fishery. Daytime generation cycles entrained shrimp at densities averaging 0.05 to 0.23 shrimp/m/sup 3/ of discharge. Eight hour daytime generation cycles would entrain 50,000 to 300,000 shrimp at these rates. Generation cycles which occurred after dark entrained many times more shrimp with densities as high as 1.21 shrimp/m/sup 3/ of discharge. Entrainment density during nighttime pump-back cycles was much greater; averaging 2 to 17 shrimp/m/sup 3/ discharged. Six to 44 million shrimp were entrained during typical 8 h pump-back cycles. Differences between daytime and nighttime entrainment rates appeared to be caused by migration of shrimp into the water column at night making them more vulnerable to entrainment. Losses were estimated to have reduced Lower Twin Lake shrimp abundance by 39% in 1985.

  10. Unscreened water-diversion pipes pose an entrainment risk to the threatened green sturgeon, Acipenser medirostris.

    PubMed

    Mussen, Timothy D; Cocherell, Dennis; Poletto, Jamilynn B; Reardon, Jon S; Hockett, Zachary; Ercan, Ali; Bandeh, Hossein; Kavvas, M Levent; Cech, Joseph J; Fangue, Nann A

    2014-01-01

    Over 3,300 unscreened agricultural water diversion pipes line the levees and riverbanks of the Sacramento River (California) watershed, where the threatened Southern Distinct Population Segment of green sturgeon, Acipenser medirostris, spawn. The number of sturgeon drawn into (entrained) and killed by these pipes is greatly unknown. We examined avoidance behaviors and entrainment susceptibility of juvenile green sturgeon (35±0.6 cm mean fork length) to entrainment in a large (>500-kl) outdoor flume with a 0.46-m-diameter water-diversion pipe. Fish entrainment was generally high (range: 26-61%), likely due to a lack of avoidance behavior prior to entering inescapable inflow conditions. We estimated that up to 52% of green sturgeon could be entrained after passing within 1.5 m of an active water-diversion pipe three times. These data suggest that green sturgeon are vulnerable to unscreened water-diversion pipes, and that additional research is needed to determine the potential impacts of entrainment mortality on declining sturgeon populations. Data under various hydraulic conditions also suggest that entrainment-related mortality could be decreased by extracting water at lower diversion rates over longer periods of time, balancing agricultural needs with green sturgeon conservation.

  11. Quadrupedal Locomotion-Respiration Entrainment and Metabolic Economy in Cross-Country Skiers.

    PubMed

    Boldt, Kevin; Killick, Anthony; Herzog, Walter

    2016-02-01

    A 1:1 locomotion-respiration entrainment is observed in galloping quadrupeds, and is thought to improve running economy. However, this has not been tested directly in animals, as animals cannot voluntarily disrupt this entrainment. The purpose of this study was to evaluate metabolic economy in a human gait involving all four limbs, cross-country skiing, in natural entrainment and forced nonentrainment. Nine elite cross-country skiers roller skied at constant speed using the 2-skate technique. In the first and last conditions, athletes used the natural entrained breathing pattern: inhaling with arm recovery and exhaling with arm propulsion, and in the second condition, the athletes disentrained their breathing pattern. The rate of oxygen uptake (VO2) and metabolic rate (MR) were measured via expired gas analysis. Propulsive forces were measured with instrumented skis and poles. VO2 and MR increased by 4% and 5% respectively when skiers used the disentrained compared with the entrained breathing pattern. There were no differences in ski or pole forces or in timing of the gait cycle between conditions. We conclude that breathing entrainment reduces metabolic cost of cross-country skiing by approximately 4%. Further, this reduction is likely a result of the entrainment rather than alterations in gait mechanics.

  12. Entrainment Across a Sheared Density Interface in High Richardson Number Cavity Flow

    NASA Astrophysics Data System (ADS)

    Williamson, Nicholas; Kirkpartick, Michael; Armfield, Steve

    2015-11-01

    The turbulent entrainment of fluid across a sharp density interface has been examined experimentally in a purging cavity flow. In the experiments, a long straight cavity with sloped entry and exit boundaries is located in the base of a straight open channel. Saline fluid is entrained from the cavity into the overflow. The cavity geometry has been designed to ensure there is no separation of the overflow in the cavity region with the goal of obtaining a single mode of entrainment, related only to the interface properties rather than to cavity specific mechanisms. The bulk entrainment rate has been measured and correlated with bulk Richardson number over Ri = 1 . 0 - 20 at Reynolds number Re = 7100 - 15100 . The entrainment rate is shown to scale with the local bulk Richardson number E ~= CRi - 1 . 38 , very close to the established result for entrainment across a sharp two layer density interface in a recirculating water channel (Strang and Fernando, J Fluid Mech., 428, 2001) but with an order of magnitude lower coefficient C. Experiments instrumented with PIV/LIF were used to relate the bulk Ri to the local gradient Richardson number of the interface. In the cavity setting the interface appears to remain sharper, resulting in larger Rig and reduced entrainment.

  13. Simulator Of Rain In Flowing Air

    NASA Technical Reports Server (NTRS)

    Clayton, Richard M.; Cho, Young I.; Shakkottai, Parthasarathy; Back, Lloyd H.

    1989-01-01

    Report describes relatively inexpensive apparatus that creates simulated precipitation from drizzle to heavy rain in flowing air. Small, positive-displacement pump and water-injecting device positioned at low-airspeed end of converging section of wind tunnel 10 in. in diameter. Drops injected by array entrained in flow of air as it accelerates toward narrower outlet, 15 in. downstream. Outlet 5 in. in diameter.

  14. Elementary theory of bed-sediment entrainment by debris flows and avalanches

    USGS Publications Warehouse

    Iverson, Richard M.

    2012-01-01

    Analyses of mass and momentum exchange between a debris flow or avalanche and an underlying sediment layer aid interpretations and predictions of bed-sediment entrainment rates. A preliminary analysis assesses the behavior of a Coulomb slide block that entrains bed material as it descends a uniform slope. The analysis demonstrates that the block's momentum can grow unstably, even in the presence of limited entrainment efficiency. A more-detailed, depth-integrated continuum analysis of interacting, deformable bodies identifies mechanical controls on entrainment efficiency, and shows that entrainment rates satisfy a jump condition that involves shear-traction and velocity discontinuities at the flow-bed boundary. Explicit predictions of the entrainment rateEresult from making reasonable assumptions about flow velocity profiles and boundary shear tractions. For Coulomb-friction tractions, predicted entrainment rates are sensitive to pore fluid pressures that develop in bed sediment as it is overridden. In the simplest scenario the bed sediment liquefies completely, and the entrainment-rate equation reduces toE = 2μ1gh1 cos θ(1 − λ1)/ , where θ is the slope angle, μ1 is the flow's Coulomb friction coefficient, h1 is its thickness, λ1 is its degree of liquefaction, and is its depth-averaged velocity. For values ofλ1ranging from 0.5 to 0.8, this equation predicts entrainment rates consistent with rates of 0.05 to 0.1 m/s measured in large-scale debris-flow experiments in which wet sediment beds liquefied almost completely. The propensity for bed liquefaction depends on several factors, including sediment porosity, permeability, and thickness, and rates of compression and shear deformation that occur when beds are overridden.

  15. EEG oscillations entrain their phase to high-level features of speech sound.

    PubMed

    Zoefel, Benedikt; VanRullen, Rufin

    2016-01-01

    Phase entrainment of neural oscillations, the brain's adjustment to rhythmic stimulation, is a central component in recent theories of speech comprehension: the alignment between brain oscillations and speech sound improves speech intelligibility. However, phase entrainment to everyday speech sound could also be explained by oscillations passively following the low-level periodicities (e.g., in sound amplitude and spectral content) of auditory stimulation-and not by an adjustment to the speech rhythm per se. Recently, using novel speech/noise mixture stimuli, we have shown that behavioral performance can entrain to speech sound even when high-level features (including phonetic information) are not accompanied by fluctuations in sound amplitude and spectral content. In the present study, we report that neural phase entrainment might underlie our behavioral findings. We observed phase-locking between electroencephalogram (EEG) and speech sound in response not only to original (unprocessed) speech but also to our constructed "high-level" speech/noise mixture stimuli. Phase entrainment to original speech and speech/noise sound did not differ in the degree of entrainment, but rather in the actual phase difference between EEG signal and sound. Phase entrainment was not abolished when speech/noise stimuli were presented in reverse (which disrupts semantic processing), indicating that acoustic (rather than linguistic) high-level features play a major role in the observed neural entrainment. Our results provide further evidence for phase entrainment as a potential mechanism underlying speech processing and segmentation, and for the involvement of high-level processes in the adjustment to the rhythm of speech.

  16. Photic entrainment of Period mutant mice is predicted from their phase response curves

    PubMed Central

    Pendergast, Julie S.; Friday, Rio C.; Yamazaki, Shin

    2010-01-01

    A fundamental property of circadian clocks is that they entrain to environmental cues. The circadian genes, Period1 and Period2, are involved in entrainment of the mammalian circadian system. To investigate the roles of the Period genes in photic entrainment, we constructed phase response curves (PRC) to light pulses for C57BL/6J wild-type, Per1−/−, Per2−/−, and Per3−/− mice and tested whether the PRCs accurately predict entrainment to non-24 light-dark cycles (T-cycles) and constant light (LL). The PRCs of wild-type and Per3−/− mice are similar in shape and amplitude and have relatively large delay zones and small advance zones, resulting in successful entrainment to T26, but not T21, with similar phase angles. Per1−/− mice have a high-amplitude PRC, resulting in entrainment to a broad range of T-cycles. Per2−/− mice also entrain to a wide range of T-cycles because the advance portion of their PRC is larger than wild-types. Period aftereffects following entrainment to T-cycles were similar among all genotypes. We found that the ratio of the advance portion to the delay portion of the PRC accurately predicts the lengthening of the period of the activity rhythm in LL. Wild-type, Per1−/−, and Per3−/− mice had larger delay zones than advance zones and lengthened (>24hrs) periods in LL, while Per2−/− mice had delay and advance zones that were equal in size and no period lengthening in LL. Together, these results demonstrate that PRCs are powerful tools for predicting and understanding photic entrainment of circadian mutant mice. PMID:20826680

  17. Investigation of Pressurized Entrained-Flow Kraft Black Liquor Gasification in an Industrially Relevant Environment

    SciTech Connect

    Kevin Whitty

    2008-06-30

    The University of Utah's project 'Investigation of Pressurized Entrained-Flow Kraft Black Liquor Gasification in an Industrially Relevant Environment' (U.S. DOE Cooperative Agreement DE-FC26-04NT42261) was a response to U.S. DOE/NETL solicitation DE-PS36-04GO94002, 'Biomass Research and Development Initiative' Topical Area 4-Kraft Black Liquor Gasification. The project began September 30, 2004. The objective of the project was to improve the understanding of black liquor conversion in high pressure, high temperature reactors that gasify liquor through partial oxidation with either air or oxygen. The physical and chemical characteristics of both the gas and condensed phase were to be studied over the entire range of liquor conversion, and the rates and mechanisms of processes responsible for converting the liquor to its final smelt and syngas products were to be investigated. This would be accomplished by combining fundamental, lab-scale experiments with measurements taken using a new semi-pilot scale pressurized entrained-flow gasifier. As a result of insufficient availability of funds and changes in priority within the Office of Biomass Programs of the U.S. Department of Energy, the research program was terminated in its second year. In total, only half of the budgeted funding was made available for the program, and most of this was used during the first year for construction of the experimental systems to be used in the program. This had a severe impact on the program. As a consequence, most of the planned research was unable to be performed. Only studies that relied on computational modeling or existing experimental facilities started early enough to deliver useful results by the time to program was terminated Over the course of the program, small scale (approx. 1 ton/day) entrained-flow gasifier was designed and installed at the University of Utah's off-campus Industrial Combustion and Gasification Research Facility. The system is designed to operate at

  18. Effects of intracerebroventricular histamine injection on circadian activity phase entrainment during rapid illumination changes.

    PubMed

    Itowi, N; Yamatodani, A; Mochizuki, T; Wada, H

    1991-02-11

    Histamine is reported to have different effects on shifting the circadian activity phase depending on its circadian administration time (CT). The delay-sensitive period is CT 12-15, and the advance-sensitive period is CT 0-3. The activity phase of rats was entrained by a new light-dark cycle within a week in groups treated with either saline or i.c.v. histamine at CT 12-15. However, on treatment at CT 0-3 the activity phase of the group treated with histamine was entrained by the new light-dark cycle in half the period required for entrainment in the control group.

  19. Entrainment of sediment particles by retrograde vortices: Test of hypothesis using near-particle observations

    NASA Astrophysics Data System (ADS)

    Wu, Fu-Chun; Shih, Wu-Rong

    2012-09-01

    We conduct an experimental study to test the hypothesis that particle entrainment is associated with a passing retrograde vortex (spanwise vortex rotating counter to the mean shear). The pre- and post-entrainment quadrant structures are probed with the laser Doppler velocimetry (LDV) at a near-particle measurement spot, using the shifted-time cumulative quadrant fraction approach. The results are characterized by a pre-entrainment spiky rise of the Q1 fraction (outward interactions) and a mild increase of the Q4 fraction (sweeps), followed by the post-entrainment dominance of the Q4 fraction and a drastic drop of the Q1 fraction. Such results suggest that it is highly probable that particle entrainment is a result of the interactions with a passing retrograde-vortex-type coherent structure. The time series of 2-D velocities at the near-particle spot consistently exhibit the short-term peaks present at the time of entrainment. The quadrant signature at an alternative spot one grain diameter upstream of the target particle exhibits a sequence in which the pre-entrainment dominant Q1 fraction is replaced by the Q4 fraction, followed by a post-entrainment peak of the Q4 fraction. The results obtained from these two locations confirm the theoretical predictions, showing that different quadrant signatures would be detected at different spots during the passage of a retrograde vortex. We also perform an extra set of experiments, in which the target particle is set in an alternative pocket geometry with diagonal downstream valleys. The similar pre-entrainment quadrant signatures detected in all the experiments performed with different types of pocket geometry and the unique post-entrainment quadrant signature detected in those performed with the alternative pocket geometry imply that an obliquely oriented retrograde vortex may have passed, entraining the particle in diagonal directions. The results point to the potential discrepancy in the observed signatures that arises

  20. Estimates of entrainment in the Denmark Strait overflow plume from CTD/LADCP data

    NASA Astrophysics Data System (ADS)

    Zhurbas, V. M.; Paka, V. T.; Rudels, B.; Quadfasel, D.

    2016-03-01

    The data of the CTD survey conducted in the Denmark Strait and Irminger Sea in May-June 2009 are used to calculate the vertical profiles of the turbulent overturning scale, which are then used to estimate the dissipation and entrainment rates in the overflow plume. The resulting estimates of the entrainment rate varied widely from 2 × 10-7 to 7 × 10-3 m/s. It is shown that such a wide range of entrainment rates is caused by the intermittency of turbulence. Large turbulent overturning at the interface of the Denmark Strait overflow plume is detected on the vertical temperature, salinity, and potential density profiles.

  1. Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

    PubMed Central

    Brandenburg, Jean-Tristan; Mary-Huard, Tristan; Rigaill, Guillem; Corti, Hélène; Vitte, Clémentine; Charcosset, Alain; Tenaillon, Maud I.

    2017-01-01

    Through the local selection of landraces, humans have guided the adaptation of crops to a vast range of climatic and ecological conditions. This is particularly true of maize, which was domesticated in a restricted area of Mexico but now displays one of the broadest cultivated ranges worldwide. Here, we sequenced 67 genomes with an average sequencing depth of 18x to document routes of introduction, admixture and selective history of European maize and its American counterparts. To avoid the confounding effects of recent breeding, we targeted germplasm (lines) directly derived from landraces. Among our lines, we discovered 22,294,769 SNPs and between 0.9% to 4.1% residual heterozygosity. Using a segmentation method, we identified 6,978 segments of unexpectedly high rate of heterozygosity. These segments point to genes potentially involved in inbreeding depression, and to a lesser extent to the presence of structural variants. Genetic structuring and inferences of historical splits revealed 5 genetic groups and two independent European introductions, with modest bottleneck signatures. Our results further revealed admixtures between distinct sources that have contributed to the establishment of 3 groups at intermediate latitudes in North America and Europe. We combined differentiation- and diversity-based statistics to identify both genes and gene networks displaying strong signals of selection. These include genes/gene networks involved in flowering time, drought and cold tolerance, plant defense and starch properties. Overall, our results provide novel insights into the evolutionary history of European maize and highlight a major role of admixture in environmental adaptation, paralleling recent findings in humans. PMID:28301472

  2. Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.

    PubMed

    Brandenburg, Jean-Tristan; Mary-Huard, Tristan; Rigaill, Guillem; Hearne, Sarah J; Corti, Hélène; Joets, Johann; Vitte, Clémentine; Charcosset, Alain; Nicolas, Stéphane D; Tenaillon, Maud I

    2017-03-01

    Through the local selection of landraces, humans have guided the adaptation of crops to a vast range of climatic and ecological conditions. This is particularly true of maize, which was domesticated in a restricted area of Mexico but now displays one of the broadest cultivated ranges worldwide. Here, we sequenced 67 genomes with an average sequencing depth of 18x to document routes of introduction, admixture and selective history of European maize and its American counterparts. To avoid the confounding effects of recent breeding, we targeted germplasm (lines) directly derived from landraces. Among our lines, we discovered 22,294,769 SNPs and between 0.9% to 4.1% residual heterozygosity. Using a segmentation method, we identified 6,978 segments of unexpectedly high rate of heterozygosity. These segments point to genes potentially involved in inbreeding depression, and to a lesser extent to the presence of structural variants. Genetic structuring and inferences of historical splits revealed 5 genetic groups and two independent European introductions, with modest bottleneck signatures. Our results further revealed admixtures between distinct sources that have contributed to the establishment of 3 groups at intermediate latitudes in North America and Europe. We combined differentiation- and diversity-based statistics to identify both genes and gene networks displaying strong signals of selection. These include genes/gene networks involved in flowering time, drought and cold tolerance, plant defense and starch properties. Overall, our results provide novel insights into the evolutionary history of European maize and highlight a major role of admixture in environmental adaptation, paralleling recent findings in humans.

  3. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

    PubMed

    Miller, Webb; Schuster, Stephan C; Welch, Andreanna J; Ratan, Aakrosh; Bedoya-Reina, Oscar C; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C; Drautz, Daniela I; Wittekindt, Nicola E; Tomsho, Lynn P; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K; Rode, Karyn; Obbard, Martyn; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Olafur; Aars, Jon; Mailund, Thomas; Wiig, Oystein; Talbot, Sandra L; Lindqvist, Charlotte

    2012-09-04

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5-10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture. We also provide paleodemographic estimates that suggest bear evolution has tracked key climate events, and that PB in particular experienced a prolonged and dramatic decline in its effective population size during the last ca. 500,000 years. We demonstrate that brown bears and PBs have had sufficiently independent evolutionary histories over the last 4-5 million years to leave imprints in the PB nuclear genome that likely are associated with ecological adaptation to the Arctic environment.

  4. Genome-wide detection of natural selection in African Americans pre- and post-admixture.

    PubMed

    Jin, Wenfei; Xu, Shuhua; Wang, Haifeng; Yu, Yongguo; Shen, Yiping; Wu, Bailin; Jin, Li

    2012-03-01

    It is particularly meaningful to investigate natural selection in African Americans (AfA) due to the high mortality their African ancestry has experienced in history. In this study, we examined 491,526 autosomal single nucleotide polymorphisms (SNPs) genotyped in 5210 individuals and conducted a genome-wide search for selection signals in 1890 AfA. Several genomic regions showing an excess of African or European ancestry, which were considered the footprints of selection since population admixture, were detected based on a commonly used approach. However, we also developed a new strategy to detect natural selection both pre- and post-admixture by reconstructing an ancestral African population (AAF) from inferred African components of ancestry in AfA and comparing it with indigenous African populations (IAF). Interestingly, many selection-candidate genes identified by the new approach were associated with AfA-specific high-risk diseases such as prostate cancer and hypertension, suggesting an important role these disease-related genes might have played in adapting to a new environment. CD36 and HBB, whose mutations confer a degree of protection against malaria, were also located in the highly differentiated regions between AAF and IAF. Further analysis showed that the frequencies of alleles protecting against malaria in AAF were lower than those in IAF, which is consistent with the relaxed selection pressure of malaria in the New World. There is no overlap between the top candidate genes detected by the two approaches, indicating the different environmental pressures AfA experienced pre- and post-population admixture. We suggest that the new approach is reasonably powerful and can also be applied to other admixed populations such as Latinos and Uyghurs.

  5. The Effects of Migration and Assortative Mating on Admixture Linkage Disequilibrium.

    PubMed

    Zaitlen, Noah; Huntsman, Scott; Hu, Donglei; Spear, Melissa; Eng, Celeste; Oh, Sam S; White, Marquitta J; Mak, Angel; Davis, Adam; Meade, Kelly; Brigino-Buenaventura, Emerita; LeNoir, Michael A; Bibbins-Domingo, Kirsten; Burchard, Esteban G; Halperin, Eran

    2017-01-01

    Statistical models in medical and population genetics typically assume that individuals assort randomly in a population. While this simplifies model complexity, it contradicts an increasing body of evidence of nonrandom mating in human populations. Specifically, it has been shown that assortative mating is significantly affected by genomic ancestry. In this work, we examine the effects of ancestry-assortative mating on the linkage disequilibrium between local ancestry tracks of individuals in an admixed population. To accomplish this, we develop an extension to the Wright-Fisher model that allows for ancestry-based assortative mating. We show that ancestry-assortment perturbs the distribution of local ancestry linkage disequilibrium (LAD) and the variance of ancestry in a population as a function of the number of generations since admixture. This assortment effect can induce errors in demographic inference of admixed populations when methods assume random mating. We derive closed form formulae for LAD under an assortative-mating model with and without migration. We observe that LAD depends on the correlation of global ancestry of couples in each generation, the migration rate of each of the ancestral populations, the initial proportions of ancestral populations, and the number of generations since admixture. We also present the first direct evidence of ancestry-assortment in African Americans and examine LAD in simulated and real admixed population data of African Americans. We find that demographic inference under the assumption of random mating significantly underestimates the number of generations since admixture, and that accounting for assortative mating using the patterns of LAD results in estimates that more closely agrees with the historical narrative.

  6. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

    USGS Publications Warehouse

    Miller, Webb; Schuster, Stephan C.; Welch, Andreanna J.; Ratan, Aakrosh; Bedoya-Reina, Oscar C.; Zhao, Fangqing; Kim, Hie Lim; Burhans, Richard C.; Drautz, Daniela I.; Wittekindt, Nicola E.; Tomsho, Lynn P.; Ibarra-Laclette, Enrique; Herrera-Estrella, Luis; Peacock, Elizabeth; Farley, Sean; Sage, George K.; Rode, Karyn; Obbard, Martyn E.; Montiel, Rafael; Bachmann, Lutz; Ingólfsson, Ólafur; Aars, Jon; Mailund, Thomas; Wiig, Øystein; Talbot, Sandra L.; Lindqvist, Charlotte

    2012-01-01

    Polar bears (PBs) are superbly adapted to the extreme Arctic environment and have become emblematic of the threat to biodiversity from global climate change. Their divergence from the lower-latitude brown bear provides a textbook example of rapid evolution of distinct phenotypes. However, limited mitochondrial and nuclear DNA evidence conflicts in the timing of PB origin as well as placement of the species within versus sister to the brown bear lineage. We gathered extensive genomic sequence data from contemporary polar, brown, and American black bear samples, in addition to a 130,000- to 110,000-y old PB, to examine this problem from a genome-wide perspective. Nuclear DNA markers reflect a species tree consistent with expectation, showing polar and brown bears to be sister species. However, for the enigmatic brown bears native to Alaska's Alexander Archipelago, we estimate that not only their mitochondrial genome, but also 5–10% of their nuclear genome, is most closely related to PBs, indicating ancient admixture between the two species. Explicit admixture analyses are consistent with ancient splits among PBs, brown bears and black bears that were later followed by occasional admixture. We also provide paleodemographic estimates that suggest bear evolution has tracked key climate events, and that PB in particular experienced a prolonged and dramatic decline in its effective population size during the last ca. 500,000 years. We demonstrate that brown bears and PBs have had sufficiently independent evolutionary histories over the last 4–5 million years to leave imprints in the PB nuclear genome that likely are associated with ecological adaptation to the Arctic environment.

  7. Genome-wide Scan of 29,141 African Americans Finds No Evidence of Directional Selection since Admixture

    PubMed Central

    Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C.; Ambrosone, Christine B.; Amos, Christopher; Bandera, Elisa V.; Berndt, Sonja I.; Bernstein, Leslie; Blot, William J.; Bock, Cathryn H.; Caporaso, Neil; Casey, Graham; Deming, Sandra L.; Diver, W. Ryan; Gapstur, Susan M.; Gillanders, Elizabeth M.; Harris, Curtis C.; Henderson, Brian E.; Ingles, Sue A.; Isaacs, William; De Jager, Phillip L.; John, Esther M.; Kittles, Rick A.; Larkin, Emma; McNeill, Lorna H.; Millikan, Robert C.; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F.; Rodriguez-Gil, Jorge L.; Rybicki, Benjamin A.; Schwartz, Ann G.; Signorello, Lisa B.; Spitz, Margaret; Strom, Sara S.; Tucker, Margaret A.; Wiencke, John K.; Witte, John S.; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A.; Zheng, Wei; Ziegler, Regina G.; Chanock, Stephen J.; Haiman, Christopher A.; Reich, David; Price, Alkes L.

    2014-01-01

    The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study’s conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas. PMID:25242497

  8. A Simple Analytical Approximation to an Inhomogeneously-Broadened Dispersion Spectrum. Application to Absorption-Dispersion Admixtures.

    PubMed

    Bales, Barney L

    2016-09-19

    A simple analytical approximation to an inhomogeneously-broadened dispersion signal is proposed and tested with resonance lines broadened by unresolved hyperfine structure. Spectral parameters may be rapidly and accurately extracted using a nonlinear least-squares fitting algorithm. Combining the new approximation to a dispersion signal with a well-known approximation to the absorption signal allows dispersion-absorption admixtures, a problem of growing importance, to be analyzed quickly and accurately. For pure dispersion signals, the maximum difference between the fit and the signal for unresolved lines is 1.1 % of the maximum intensity. For pure absorption, the difference is 0.33 % of the peak-to-peak intensity, and for admixtures up to 40 % dispersion (maximum intensity/peak-to-peak intensity), the difference is 0.7 %. The accuracy of the recovered spectral parameters depends on the degree of inhomogeneously-broadened and the percentage admixture, but they are generally about 1 % at most. A significant finding of the work is that the parameters pertinent to the dispersion or the absorption are insignificantly different when fitting isolated lines vs. fitting admixtures. Admixtures with added noise or an unsuspected extraneous line are investigated.

  9. Admixture patterns and genetic differentiation in negrito groups from West Malaysia estimated from genome-wide SNP data.

    PubMed

    Jinam, Timothy A; Phipps, Maude E; Saitou, Naruya

    2013-01-01

    Southeast Asia houses various culturally and linguistically diverse ethnic groups. In Malaysia, where the Malay, Chinese, and Indian ethnic groups form the majority, there exist minority groups such as the "negritos" who are believed to be descendants of the earliest settlers of Southeast Asia. Here we report patterns of genetic substructure and admixture in two Malaysian negrito populations (Jehai and Kensiu), using ~50,000 genome-wide single-nucleotide polymorphism (SNP) data. We found traces of recent admixture in both the negrito populations, particularly in the Jehai, with the Malay through principal component analysis and STRUCTURE analysis software, which suggested that the admixture was as recent as one generation ago. We also identified significantly differentiated nonsynonymous SNPs and haplotype blocks related to intracellular transport, metabolic processes, and detection of stimulus. These results highlight the different levels of admixture experienced by the two Malaysian negritos. Delineating admixture and differentiated genomic regions should be of importance in designing and interpretation of molecular anthropology and disease association studies.

  10. Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture.

    PubMed

    Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C; Ambrosone, Christine B; Amos, Christopher; Bandera, Elisa V; Berndt, Sonja I; Bernstein, Leslie; Blot, William J; Bock, Cathryn H; Caporaso, Neil; Casey, Graham; Deming, Sandra L; Diver, W Ryan; Gapstur, Susan M; Gillanders, Elizabeth M; Harris, Curtis C; Henderson, Brian E; Ingles, Sue A; Isaacs, William; De Jager, Phillip L; John, Esther M; Kittles, Rick A; Larkin, Emma; McNeill, Lorna H; Millikan, Robert C; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F; Rodriguez-Gil, Jorge L; Rybicki, Benjamin A; Schwartz, Ann G; Signorello, Lisa B; Spitz, Margaret; Strom, Sara S; Tucker, Margaret A; Wiencke, John K; Witte, John S; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A; Zheng, Wei; Ziegler, Regina G; Chanock, Stephen J; Haiman, Christopher A; Reich, David; Price, Alkes L

    2014-10-02

    The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study's conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas.

  11. Genetic admixture of eight Mexican indigenous populations: based on five polymarker, HLA-DQA1, ABO, and RH loci.

    PubMed

    Buentello-Malo, Leonora; Peñaloza-Espinosa, Rosenda I; Salamanca-Gómez, Fabio; Cerda-Flores, Ricardo M

    2008-01-01

    This study explores the genetic admixture of eight Mexican indigenous populations (Otomi-Ixmiquilpan, Otomi-Actopan, Tzeltales, Nahua-Milpa-Alta, Nahua-Xochimilco, Nahua-Zitlala, Nahua-Ixhuatlancillo, and Nahua-Coyolillo) on the basis of five PCR-based polymorphic DNA loci (LDLR, GYPA, HBGG, D7S8, GC), HLA_DQA1, and the blood groups ABO and Rh (CcDEe). Among the indigenous populations, the highest gene frequencies for O and D were 0.9703 and 1.000 for Zitlala (State of Guerrero) and 0.9955 and 0.9414 for Tzeltales (State of Chiapas), respectively. Maximum likelihood estimates of admixture components yield a trihybrid model with Amerindian (assuming that Nahua-Zitlala is the most representative indigenous population), Spanish, and African ancestry with the admixture proportions: 93.03, 6.03, and 0.94 for Tzeltales, and 28.99, 44.03, and 26.98 for Coyolillo. A contribution of the ancestral populations of Ixhuatlancillo, Actopan, Ixmiquilpan, Milpa-Alta, and Xochimilco were found with the following average of admixture proportions: 75.84, 22.50, and 1.66. The findings herein demonstrate that the genetic admixture of the Mexican indigenous populations who at present speak the same Amer-Indian language can be differentiated and that the majority of them have less ancestral indigenous contribution than those considered as Mestizo populations.

  12. Laboratory Evaluation of Expedient Low-Temperature Concrete Admixtures for Repairing Blast Holes in Cold Weather

    DTIC Science & Technology

    2013-01-08

    ERDC/CRREL TR-13-1 7 entire solution was cooled to testing temperature (0, −5, or −10°C). The cement was placed into a dry mixing bowl . The mixer...was turned on at low speed and water solution was added. Mixing duration was for 30 seconds. The mixer was stopped, the sides of the bowl were scraped...control dust at construction sites and on some unpaved roads. As an accelerating admixture in concrete, you can use between 1 and 2% of calcium chloride

  13. Isolation with differentiation followed by expansion with admixture in the tunicate Pyura chilensis

    PubMed Central

    2013-01-01

    Background Pyura chilensis, a tunicate commercially exploited as food resource in Chile, is subject to management strategies, including restocking. The goal of this study was to examine the genetic structure of P. chilensis using information from a mitochondrial gene (Cytochrome Oxidase I, COI) and a nuclear gene (Elongation 1 alpha, EF1a), to characterize the geographic distribution of genetic diversity and differentiation, and to identify the main processes that have shaped it. We analyzed 268 and 208 sequences of COI and EF1a, respectively, from samples of eight local populations covering ca. 1800 km. Results For Pyura chilensis, partial sequences of the gene COI revealed three highly supported haplogroups that diverged 260000 to 470000 years ago. Two haplogroups currently are widely distributed and sympatric, while one is dominant only in Los Molinos (LM, 39°50′S). The two widespread COI haplogroups underwent a geographic expansion during an interglacial period of the Late Pleistocene ca. 100000 years ago. The nuclear gene was less divergent and did not resolve the COI haplogroups. Bayesian clustering of the nuclear gene’s SNPs revealed that individuals from the two widespread COI haplogroups were mostly assigned to two of the three detected clusters and had a marked degree of admixture. The third cluster predominated in LM and showed low admixture. Haplotypic diversity of both genes was very high, there was no isolation by distance, and most localities were genetically undifferentiated; only LM was consistently differentiated with both genes analyzed. Conclusions Pyura chilensis has less genetic structure than expected given its life history, which could be a consequence of dispersal on ship hulls. The only differentiated local population analyzed was LM. Coincidentally, it is the one furthest away from main maritime routes along the coast of Chile. The use of mitochondrial and nuclear markers allowed detection of divergent mitochondrial haplogroups in

  14. Ethnic Admixture Affects Diabetes Risk in Native Hawaiians: The Multiethnic Cohort

    PubMed Central

    Maskarinec, Gertraud; Morimoto, Yukiko; Jacobs, Simone; Grandinetti, Andrew; Mau, Marjorie K.; Kolonel, Laurence N.

    2016-01-01

    Background/Objectives Obesity and diabetes rates are high in Native Hawaiians (NH) who commonly have mixed ancestries. Persons of Asian ancestry experience a high risk of type 2 diabetes despite the relatively low body weight. We evaluated the impact of ethnic admixture on diabetes risk among NH in the Multiethnic Cohort (MEC). Methods/Subjects Based on self-reports, 11,521 eligible men and women were categorized into NH/white, NH/other, NH alone, NH/Asian, and the most common three ancestry admixture, NH/Chinese/white. Cox proportional hazard ratios (HRs) and 95% confidence intervals (CIs) were calculated with the NH/white category as the reference group; covariates included known confounders, i.e., body mass index (BMI), dietary and other life-style factors. Results The NH alone category had the highest proportion of overweight and obese individuals and the NH/Asian category the lowest proportion. During 12 years of follow-up after cohort entry at 56 years, 2,072 incident cases were ascertained through questionnaires and health plan linkages. All NH categories had higher HRs than the NH/white category before and after adjustment for BMI. In fully-adjusted models, the NH/Asian category showed the highest risk (HR=1.45; 95%CI: 1.27–1.65), followed by NH/other (HR=1.20; 95%CI: 1.03–1.39), NH/Chinese/white (HR=1.19; 95%CI: 1.04–1.37), and NH alone (HR=1.19; 95%CI: 1.03–1.37). The elevated risk by Asian admixture was more pronounced in normal weight than overweight/obese individuals. Conclusions These findings indicate that Asian admixture in NHs is associated with higher risk for type 2 diabetes independent of known risk factors and suggest a role for ethnicity-related genetic factors in the development of this disease. PMID:27026423

  15. Kinetics of ion admixture in a native gas in an external harmonic electric field

    NASA Astrophysics Data System (ADS)

    Ender, A. Ya.; Ender, I. A.; Gerasimenko, A. B.

    2016-11-01

    We have considered the spatially homogeneous problem of the behavior of an ion admixture in a background gas after applying a harmonic electric field with arbitrary parameters for various laws of interaction of particles. The Boltzmann equation has been solved using the modified method of moments. The ion distribution function and its first moments have been analyzed. It has been shown that the universal analytic expressions for the current density and the ion energy that we derived earlier for a small field amplitude-tofrequency ratio have a considerably wider range of applications.

  16. Weather entrainment and multispectral diel activity rhythm of desert hamsters.

    PubMed

    Wan, Xinrong; Zhang, Xinjie; Huo, Yingjun; Wang, Guiming

    2013-10-01

    The circadian rhythm of animals is an adaptation to predictable variation in environmental conditions. Multiple internal oscillators may allow animals to cope with environmental oscillations in different frequencies. Heat stress and dramatic differences between night and day temperatures are the main selective pressures of the diel activity of desert mammals, particularly small-sized rodents. We tested the hypotheses that the diel activities of desert hamsters (Phodopus roborovskii) would be entrained by ambient humidity and temperature. We predicted that increases in night temperature and humidity would improve the propensity to perform activities of the hamster. We observed hourly activities of desert hamsters under semi natural conditions for 24 consecutive hours, with seven replicates in 7 different days. We fit generalized linear mixed models to observed proportions of active hamsters, temperatures, and relative humidity. Observed diel activities of desert hamsters consisted of three harmonic oscillations in the periodicities of 24 h, 12 h, and 6 h, respectively. Furthermore, probabilities to perform activities were positively related to night temperature and humidity. Therefore, the diel activities of desert hamsters are synchronized by atmospheric humidity, temperatures, and environmental cues of ultradian fluctuations.

  17. Transcranial electric stimulation entrains cortical neuronal populations in rats

    PubMed Central

    Ozen, Simal; Sirota, Anton; Belluscio, Mariano A.; Anastassiou, Costas A.; Stark, Eran; Koch, Christof; Buzsáki, György

    2010-01-01

    Low intensity electric fields have been suggested to affect the ongoing neuronal activity in vitro and in human studies. However, the physiological mechanism of how weak electrical fields affect and interact with intact brain activity is not well understood. We performed in vivo extracellular and intracellular recordings from the neocortex and hippocampus of anaesthetized rats and extracellular recordings in behaving rats. Electric fields were generated by sinusoid patterns at slow frequency (0.8, 1.25 or 1.7 Hz) via electrodes placed on the surface of the skull or the dura. Transcranial electric stimulation (TES) reliably entrained neurons in widespread cortical areas, including the hippocampus. The percentage of TES phase-locked neurons increased with stimulus intensity and depended on the behavioral state of the animal. TES-induced voltage gradient, as low as 1 mV/mm at the recording sites, was sufficient to phase-bias neuronal spiking. Intracellular recordings showed that both spiking and subthreshold activity were under the combined influence of TES forced fields and network activity. We suggest that TES in chronic preparations may be used for experimental and therapeutic control of brain activity. PMID:20739569

  18. Colour as a signal for entraining the mammalian circadian clock.

    PubMed

    Walmsley, Lauren; Hanna, Lydia; Mouland, Josh; Martial, Franck; West, Alexander; Smedley, Andrew R; Bechtold, David A; Webb, Ann R; Lucas, Robert J; Brown, Timothy M

    2015-04-01

    Twilight is characterised by changes in both quantity ("irradiance") and quality ("colour") of light. Animals use the variation in irradiance to adjust their internal circadian clocks, aligning their behaviour and physiology with the solar cycle. However, it is currently unknown whether changes in colour also contribute to this entrainment process. Using environmental measurements, we show here that mammalian blue-yellow colour discrimination provides a more reliable method of tracking twilight progression than simply measuring irradiance. We next use electrophysiological recordings to demonstrate that neurons in the mouse suprachiasmatic circadian clock display the cone-dependent spectral opponency required to make use of this information. Thus, our data show that some clock neurons are highly sensitive to changes in spectral composition occurring over twilight and that this input dictates their response to changes in irradiance. Finally, using mice housed under photoperiods with simulated dawn/dusk transitions, we confirm that spectral changes occurring during twilight are required for appropriate circadian alignment under natural conditions. Together, these data reveal a new sensory mechanism for telling time of day that would be available to any mammalian species capable of chromatic vision.

  19. Evidence of micro-continent entrainment during crustal accretion

    PubMed Central

    Pilia, S.; Rawlinson, N.; Cayley, R. A.; Bodin, T.; Musgrave, R.; Reading, A. M.; Direen, N. G.; Young, M. K.

    2015-01-01

    Simple models involving the gradual outboard accretion of material along curvilinear subduction zones are often inconsistent with field-based evidence. A recent study using 3-D geodynamic modelling has shown that the entrainment of an exotic continental fragment within a simple subduction system can result in a complex phase of growth. Although kinematic models based on structural mapping and high-resolution gravity and magnetic maps indicate that the pre-Carboniferous Tasmanides in southeastern Australia may have been subjected to this process, to date there has been little corroboration from crustal scale geophysical imaging. Here, we apply Bayesian transdimensional tomography to ambient noise data recorded by the WOMBAT transportable seismic array to constrain a detailed (20 km resolution in some areas) 3-D shear velocity model of the crust beneath southeast Australia. We find that many of the velocity variations that emerge from our inversion support the recently developed geodynamic and kinematic models. In particular, the full thickness of the exotic continental block, responsible for orocline formation and the tectonic escape of the back arc region, is imaged here for the first time. Our seismic results provide the first direct evidence that exotic continental fragments may profoundly affect the development of an accretionary orogen. PMID:25645934

  20. Changes in music tempo entrain movement related brain activity.

    PubMed

    Daly, Ian; Hallowell, James; Hwang, Faustina; Kirke, Alexis; Malik, Asad; Roesch, Etienne; Weaver, James; Williams, Duncan; Miranda, Eduardo; Nasuto, Slawomir J

    2014-01-01

    The neural mechanisms of music listening and appreciation are not yet completely understood. Based on the apparent relationship between the beats per minute (tempo) of music and the desire to move (for example feet tapping) induced while listening to that music it is hypothesised that musical tempo may evoke movement related activity in the brain. Participants are instructed to listen, without moving, to a large range of musical pieces spanning a range of styles and tempos during an electroencephalogram (EEG) experiment. Event-related desynchronisation (ERD) in the EEG is observed to correlate significantly with the variance of the tempo of the musical stimuli. This suggests that the dynamics of the beat of the music may induce movement related brain activity in the motor cortex. Furthermore, significant correlations are observed between EEG activity in the alpha band over the motor cortex and the bandpower of the music in the same frequency band over time. This relationship is observed to correlate with the strength of the ERD, suggesting entrainment of motor cortical activity relates to increased ERD strength.

  1. Kinematics of flow and sediment particles at entrainment and deposition

    NASA Astrophysics Data System (ADS)

    Antico, Federica; Sanches, Pedro; Aleixo, Rui; Ferreira, Rui M. L.

    2015-04-01

    A cohesionless granular bed subjected to a turbulent open-channel flow is analysed. The key objective is to clarify the kinematics of entrainment and deposition of individual sediment particles. In particular, we quantify a) the turbulent flow field in the vicinity of particles at the instants of their entrainment and of their deposition; b) the initial particle velocity and the particle velocity immediately before returning to rest. The experimental work was performed at the Hydraulics Laboratory of IST-UL in a 12.5 m long, 0.405 m wide glass-walled flume recirculating water and sediment through independent circuits. The granular bed was a 4.0 m long and 2.5 cm deep reach filled with 5 mm diameter glass beads packed (with some vibration) to a void fraction of 0.356, typical of random packing. Upstream the mobile bed reach the bed was composed of glued particles to ensure the development of a boundary layer with the same roughness. Laboratory tests were run under conditions of weak beadload transport with Shields parameters in the range 0.007 to 0.03. Froude numbers ranged from 0.63 to 0.95 while boundary Reynolds numbers were in the range 130 to 300. It was observed that the bed featured patches of regular arrangements: face centered cubic (fcc) or hexagonal close packing (hcp) blocks alternate with and body centered cubic (bcc) blocks. The resulting bed surface exhibits cleavage lines between blocks and there are spatial variations of bed elevation. The option for artificial sediment allowed for a simplified description of particle positioning at the instant of entrainment. In particular support and pivoting angles are found analytically. Skin friction angles were determind experimentally. The only relevant variables are exposure (defined as the ratio of the actual frontal projection of the exposed area to the area of a circle with 5 mm diameter) and protrusion (defined as the vertical distance between the apex of the particle and the mean local bed elevation

  2. Colour As a Signal for Entraining the Mammalian Circadian Clock

    PubMed Central

    Walmsley, Lauren; Hanna, Lydia; Mouland, Josh; Martial, Franck; West, Alexander; Smedley, Andrew R.; Bechtold, David A.; Webb, Ann R.; Lucas, Robert J.; Brown, Timothy M.

    2015-01-01

    Twilight is characterised by changes in both quantity (“irradiance”) and quality (“colour”) of light. Animals use the variation in irradiance to adjust their internal circadian clocks, aligning their behaviour and physiology with the solar cycle. However, it is currently unknown whether changes in colour also contribute to this entrainment process. Using environmental measurements, we show here that mammalian blue–yellow colour discrimination provides a more reliable method of tracking twilight progression than simply measuring irradiance. We next use electrophysiological recordings to demonstrate that neurons in the mouse suprachiasmatic circadian clock display the cone-dependent spectral opponency required to make use of this information. Thus, our data show that some clock neurons are highly sensitive to changes in spectral composition occurring over twilight and that this input dictates their response to changes in irradiance. Finally, using mice housed under photoperiods with simulated dawn/dusk transitions, we confirm that spectral changes occurring during twilight are required for appropriate circadian alignment under natural conditions. Together, these data reveal a new sensory mechanism for telling time of day that would be available to any mammalian species capable of chromatic vision. PMID:25884537

  3. Understanding Mixing and Entrainment of Oceanic Overflows Using Laboratory Experiments

    NASA Astrophysics Data System (ADS)

    Ecke, R. E.; Odier, P.; Chen, J.; Rivera, M. K.

    2007-12-01

    Oceanic overflows are important elements of the Earth's global thermohaline circulation but the mixing and entrainment that occur for such overflows is poorly understood. In particular, as overflow water moves down an inclined slope its stability is governed by the competition between stratification, which stabilizes the flow, and vertical shear, which tends to destabilize the flow. The properties of our laboratory experiment are designed to mimic oceanic overflows to the extent achievable on laboratory-accessible length scales. The flow exits a nozzle and flows along an inclined plane such that there is gravitational forcing of the flowing gravity current. We inject turbulent velocity fluctuations into the fluid using an active rotating grid prior to its exit from the nozzle, thereby generating a turbulent boundary layer condition at the plane boundary. The Taylor Reynolds number of the flow coming out of the nozzle is about 150. Velocity and density fields are measured simultaneous using particle image velocimetry and planar laser induced fluorescence. The flow structure and dynamics of mixing at different downstream locations are investigated for a standard stratified case and a non-stratified case where there is no density difference between the injected current and the ambient fluid. The role of turbulence is examined by comparing cases of turbulent and the laminar gravity currents. The implication of these results for ocean simulations will be presented.

  4. Evidence of micro-continent entrainment during crustal accretion.

    PubMed

    Pilia, S; Rawlinson, N; Cayley, R A; Bodin, T; Musgrave, R; Reading, A M; Direen, N G; Young, M K

    2015-02-03

    Simple models involving the grad