Dynamic Analysis of a Rotor System Supported on Squeeze Film Damper with Air Entrainment

NASA Astrophysics Data System (ADS)

Zhang, Wei; Han, Bingbing; Zhang, Kunpeng; Ding, Qian

2017-12-01

Squeeze film dampers (SFDs) are widely used in compressors and turbines to suppress the vibration while traversing critical speeds. In practical applications, air ingestion from the outside environment and cavitation may lead to a foamy lubricant that weakens oil film damping and dynamic performance of rotor system. In this paper, a rigid rotor model is established considering both lateral and pitching vibration under different imbalance excitations to evaluate the effect of air entrainment on rotor system. Tests with three different imbalances are carried out on a rotor-SFD apparatus. Volume controlled air in mixture ranging from pure oil to all air are supplied to the SFD. The transient response of rotor is measured in the experiments. The results show that two-phase flow produces significant influence on the system stability and dynamical response. The damping properties are weakened by entrained air, such as the damping on high frequency components of rolling ball bearing. Super-harmonic resonance and bifurcation are observed, as well as the low frequency components due to air entrainment.

Concrete pavement mixture design and analysis (MDA) : assessment of air void system requirements for durable concrete.

DOT National Transportation Integrated Search

2012-06-01

Concrete will suffer frost damage when saturated and subjected to freezing temperatures. Frost-durable concrete can be produced if a : specialized surfactant, also known as an air-entraining admixture (AEA), is added during mixing to stabilize micros...

Experimental study of near-field air entrainment by subsonic volcanic jets

USGS Publications Warehouse

Solovitz, Stephen A.; Mastin, Larry G.

2009-01-01

The flow structure in the developing region of a turbulent jet has been examined using particle image velocimetry methods, considering the flow at steady state conditions. The velocity fields were integrated to determine the ratio of the entrained air speed to the jet speed, which was approximately 0.03 for a range of Mach numbers up to 0.89 and Reynolds numbers up to 217,000. This range of experimental Mach and Reynolds numbers is higher than previously considered for high-accuracy entrainment measures, particularly in the near-vent region. The entrainment values are below those commonly used for geophysical analyses of volcanic plumes, suggesting that existing 1-D models are likely to understate the tendency for column collapse.

Material Properties Governing Co-Current Flame Spread: The Effect of Air Entrainment

NASA Technical Reports Server (NTRS)

Coutin, Mickael; Rangwala, Ali S.; Torero, Jose L.; Buckley, Steven G.

2003-01-01

A study on the effects of lateral air entrainment on an upward spreading flame has been conducted. The fuel is a flat PMMA plate of constant length and thickness but variable width. Video images and surface temperatures have allowed establishing the progression of the pyrolyis front and on the flame stand-off distance. These measurements have been incorporated into a theoretical formulation to establish characteristic mass transfer numbers ("B" numbers). The mass transfer number is deemed as a material related parameter that could be used to assess the potential of a material to sustain co-current flame spread. The experimental results show that the theoretical formulation fails to describe heat exchange between the flame and the surface. The discrepancies seem to be associated to lateral air entrainment that lifts the flame off the surface and leads to an over estimation of the local mass transfer number. Particle Image Velocimetry (PIV) measurements are in the process of being acquired. These measurements are intended to provide insight on the effect of air entrainment on the flame stand-off distance. A brief description of the methodology to be followed is presented here.

Influence of surfactant upon air entrainment hysteresis in curtain coating

NASA Astrophysics Data System (ADS)

Marston, J. O.; Hawkins, V.; Decent, S. P.; Simmons, M. J. H.

2009-03-01

The onset of air entrainment for curtain coating onto a pre-wetted substrate was studied experimentally in similar parameter regimes to commercial coating ( Re = ρ Q/μ = O(1), We = ρ Q u c /σ = O(10), Ca = μ U/σ = O(1)). Impingement speed and viscosity were previously shown to be critical parameters in correlating air entrainment data with three qualitatively different regimes of hydrodynamic assist identified (Marston et al. in Exp Fluids 42(3):483-488, 2007a). The interaction of the impinging curtain with the pre-existing film also led to a significant hysteretic effect throughout the flow rate-substrate speed parameter space. For the first time, results considering the influence of surfactants are presented in attempt to elucidate the relative importance of surface tension in this inertia-dominated system. The results show quantitative and qualitative differences to previous results with much more complex hysteretic behaviour which has only been reported previously for rough surfaces.

Noninvasive CPAP with face mask: comparison among new air-entrainment masks and the Boussignac valve.

PubMed

Mistraletti, Giovanni; Giacomini, Matteo; Sabbatini, Giovanni; Pinciroli, Riccardo; Mantovani, Elena S; Umbrello, Michele; Palmisano, Debora; Formenti, Paolo; Destrebecq, Anne L L; Iapichino, Gaetano

2013-02-01

The performances of 2 noninvasive CPAP systems (high flow and low flow air-entrainment masks) were compared to the Boussignac valve in 3 different scenarios. Scenario 1: pneumatic lung simulator with a tachypnea pattern (tidal volume 800 mL at 40 breaths/min). Scenario 2: Ten healthy subjects studied during tidal breaths and tachypnea. Scenario 3: Twenty ICU subjects enrolled for a noninvasive CPAP session. Differences between set and effective CPAP level and F(IO(2)), as well as the lowest airway pressure and the pressure swing around the imposed CPAP level, were analyzed. The lowest airway pressure and swing were correlated to the pressure-time product (area of the airway pressure curve below the CPAP level) measured with the simulator. P(aO(2)) was a subject's further performance index. Lung simulator: Boussignac F(IO(2)) was 0.54, even if supplied with pure oxygen. The air-entrainment masks had higher swing than the Boussignac (P = .007). Pressure-time product correlated better with pressure swing (Spearman correlation coefficient [ρ] = 0.97) than with lowest airway pressure (ρ = 0.92). In healthy subjects, the high-flow air-entrainment mask showed lower difference between set and effective F(IO(2)) (P < .001), and lowest airway pressure (P < .001), compared to the Boussignac valve. In all measurements the Boussignac valve showed higher than imposed CPAP level (P < .001). In ICU subjects the high-flow mask had lower swing than the Boussignac valve (P = .03) with similar P(aO(2)) increase. High-flow air-entrainment mask showed the best performance in human subjects. During high flow demand, the Boussignac valve delivered lower than expected F(IO(2)) and showed higher dynamic hyper-pressurization than the air-entrainment masks. © 2013 Daedalus Enterprises.

Using Neutron Radiography to Quantify Water Transport and the Degree of Saturation in Entrained Air Cement Based Mortar

NASA Astrophysics Data System (ADS)

Lucero, Catherine L.; Bentz, Dale P.; Hussey, Daniel S.; Jacobson, David L.; Weiss, W. Jason

Air entrainment is commonly added to concrete to help in reducing the potential for freeze thaw damage. It is hypothesized that the entrained air voids remain unsaturated or partially saturated long after the smaller pores fill with water. Small gel and capillary pores in the cement matrix fill quickly on exposure to water, but larger pores (entrapped and entrained air voids) require longer times or other methods to achieve saturation. As such, it is important to quantitatively determine the water content and degree of saturation in air entrained cementitious materials. In order to further investigate properties of cement-based mortar, a model based on Beer's Law has been developed to interpret neutron radiographs. This model is a powerful tool for analyzing images acquired from neutron radiography. A mortar with a known volume of aggregate, water to cement ratio and degree of hydration can be imaged and the degree of saturation can be estimated.

Entrainment Zone Characteristics and Entrainment Rates in Cloud-Topped Boundary Layers from DYCOMS-II

DTIC Science & Technology

2012-03-01

water and ozone across the EIL. The scalar variables from this flight (not shown) suggest significant horizontal variation in the free- troposphere ...near the cloud top where mixing occurs between dry free- troposphere air and moist turbulent air. Although the concept of the entrainment zone is...mixing occurs between dry free- troposphere air and moist turbulent air. Although the concept of the entrainment zone is clear, defining the top and

Resistance to Internal Damage and Scaling of Concrete Air Entrained By Microspheres

NASA Astrophysics Data System (ADS)

Molendowska, Agnieszka; Wawrzenczyk, Jerzy

2017-10-01

This paper report the test results of high strength concrete produced with slag cement and air entrained with polymer microspheres in three diameters. The study focused on determining the effects of the microsphere size and quantity on the air void structure and resistance to internal cracking and scaling of the concrete. The resistance to internal cracking was determined in compliance with the requirements of the modified ASTM C666 A method on beam specimens. The scaling resistance in a 3% NaCl solution was determined using the slab test in accordance with PKN-CEN/TS 12390-9:2007. The air void structure parameters were determined to PN-EN 480-11:1998. The study results indicate that the use of microspheres is an effective air entrainment method providing very good air void structure parameters. The results show high freeze-thaw durability of polymer microsphere-based concrete in exposure class XF3. The scaling resistance test confirms that it is substantially more difficult to protect concrete against scaling in the presence of the 3% NaCl solution (exposure class XF4). Concrete scaling is a complex phenomenon controlled by a number of independent factors.

In-Roll Stress Analysis Considering Air-Entrainment at the Roll-Inlet with the Effect of Grooves on Nip Roll Surface

NASA Astrophysics Data System (ADS)

Sasaki, Masashi; Tanimoto, Koshi; Kohno, Kazukiyo; Takahashi, Sadamu; Kometani, Hideo; Hashimoto, Hiromu

High-speed winding of paper web sometimes leads the winding system into unstable states, interlayer slippage of wound roll, paper breakage and so on, due to the excessive air-entrainment at the roll-inlet of nip contact region. These phenomena are more frequently observed on coated paper or plastic film comparing with newspaper, because the former allows little permeation of air and their surface roughness is small. Therefore, it is of vital importance to clarify the in-roll stress of wound roll considering the effect of air-entrainment. Generally, it is known that the amount of air-entrainment is affected by grooving shape of nip roll surface. In this paper, we focused on the grooving shape and investigated the relationship with the air-entrainment into two rolls being pressed each other and the grooving shape in order to achieve stable winding at high speed. We conducted experiments using small sized test machine. Entrained air-film thickness was evaluated applying the solution of the elasto-hydrodynamic lubrication for foil bearing with the consideration of nip profile at the grooved area. Air film thickness was measured to ensure the applicability of the above theory. Consequently, we found that the air film thickness can be estimated considering the effect of grooves on the nip roll surface, and that the validity of the above estimations was ensured from experimental investigations. Furthermore, it became to be able to propose the optimal shape of grooves on nip roll surface to maintain the stable winding at high speed and at large-diameter in reel.

Numerical simulation for the air entrainment of aerated flow with an improved multiphase SPH model

NASA Astrophysics Data System (ADS)

Wan, Hang; Li, Ran; Pu, Xunchi; Zhang, Hongwei; Feng, Jingjie

2017-11-01

Aerated flow is a complex hydraulic phenomenon that exists widely in the field of environmental hydraulics. It is generally characterised by large deformation and violent fragmentation of the free surface. Compared to Euler methods (volume of fluid (VOF) method or rigid-lid hypothesis method), the existing single-phase Smooth Particle Hydrodynamics (SPH) method has performed well for solving particle motion. A lack of research on interphase interaction and air concentration, however, has affected the application of SPH model. In our study, an improved multiphase SPH model is presented to simulate aeration flows. A drag force was included in the momentum equation to ensure accuracy of the air particle slip velocity. Furthermore, a calculation method for air concentration is developed to analyse the air entrainment characteristics. Two studies were used to simulate the hydraulic and air entrainment characteristics. And, compared with the experimental results, the simulation results agree with the experimental results well.

Impact of hydrated cement paste quality and entrained air-void system on the durability of concrete.

DOT National Transportation Integrated Search

2011-06-30

This study is designed to examine whether traditional limits used to describe the air-void system still : apply to concrete prepared with new admixtures and materials. For this research, the concrete mixtures : prepared were characterized with tradit...

Liquid-surface entrainment induced by shocked air stream

NASA Astrophysics Data System (ADS)

Rodriguez, V.; Jourdan, G.; Marty, A.; Allou, A.; Parisse, J.-D.

2018-02-01

Recently, we experimentally studied, in a shock tube environment, shock waves propagating over horizontal free water layers having depths of 10, 20, and 30 mm for shock wave Mach numbers M_is equal to 1.1 and 1.4. The qualitative interaction process was observed by means of high-speed visualizations, and the pressures arising in the air and in the water layer were measured and interpreted in terms of the various incident and refracted shock waves in air and water; in particular, it was concluded that the compression wave in the water is driven by the planar shock wave in the air. Additional experiments have been conducted and the novel contributions of the present technical note are quantitative results regarding the liquid-surface entrainment. At low Mach number (M_is=1.1 ), we show that the velocity of the droplets ejected into the air is independent of the water depth, unlike the wavelength of initial ripples and the angle of ejection. When the shock wave strength increases (M_is=1.4 ), the dispersion of a very thin droplet mist and a single large wave take place. We show that the thickening of the water mist and the velocity of the subsequent large wave decreases with the water-layer depth.

Investigation of Proprietary Air-Entraining Admixtures to Produce Frost- Resistant Concrete with Low Air Content

DTIC Science & Technology

1992-03-01

LABORATORY rci-dr Civil Works Investigation Studies Work Unit 31138 92 4 22096 Best Avai~lable Copy ’ p ~ o) n< w : -c rnsu on’ ratur.- 𔃼t crrJ’ria’ cr...Low Air Investigation Content Studies 6. AUTHOR(S) Work Unit 31138 Billy D. Neeley, W. E. McDonald, Michael K. Lloyd 7. PERFORMING ORGANIZATION NAME(S...as a part of Civil Works Investigation Studies Work Unit 31138 , "New Technologies for Testing and Evaluating Concrete." The study was conducted under

Performance of rice husk ash produced using a new technology as a mineral admixture in concrete

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nehdi, M.; Duquette, J.; El Damatty, A

2003-08-01

This article investigates the use of a new technique for the controlled combustion of Egyptian rice husk to mitigate the environmental concerns associated with its uncontrolled burning and provide a supplementary cementing material for the local construction industry. The reactor used provides efficient combustion of rice husk in a short residency time via the suspension of processed particles by jets of a process air stream that is forced though stationary angled blades at high velocity. Investigations on the rice husk ash (RHA) thus produced included oxide analysis, X-ray diffraction, carbon content, grindability, water demand, pozzolanic activity index, surface area, andmore » particle size distribution measurements. In addition, concrete mixtures incorporating various proportions of silica fume (SF) and Egyptian RHA (EG-RHA) produced at different combustion temperatures were made and compared. The workability, superplasticizer and air-entraining admixture requirements, and compressive strength at various ages of these concrete mixtures were evaluated, and their resistance to rapid chloride penetrability and deicing salt surface scaling were examined. Test results indicate that contrary to RHA produced using existing technology, the superplasticizer and air-entraining agent requirements did not increase drastically when the RHA developed in this study was used. Compressive strengths achieved by concrete mixtures incorporating the new RHA exceeded those of concretes containing similar proportions of SF. The resistance to surface scaling of RHA concrete was better than that of concrete containing similar proportions of SF. While the chloride penetrability was substantially decreased by RHA, it remained slightly higher than that achieved by SF concrete.« less

-> Air entrainment and bubble statistics in three-dimensional breaking waves

NASA Astrophysics Data System (ADS)

Deike, L.; Popinet, S.; Melville, W. K.

2016-02-01

Wave breaking in the ocean is of fundamental importance for quantifying wave dissipation and air-sea interaction, including gas and momentum exchange, and for improving air-sea flux parametrizations for weather and climate models. Here we investigate air entrainment and bubble statistics in three-dimensional breaking waves through direct numerical simulations of the two-phase air-water flow using the Open Source solver Gerris. As in previous 2D simulations, the dissipation due to breaking is found to be in good agreement with previous experimental observations and inertial-scaling arguments. For radii larger than the Hinze scale, the bubble size distribution is found to follow a power law of the radius, r-10/3 and to scale linearly with the time dependent turbulent dissipation rate during the active breaking stage. The time-averaged bubble size distribution is found to follow the same power law of the radius and to scale linearly with the wave dissipation rate per unit length of breaking crest. We propose a phenomenological turbulent bubble break-up model that describes the numerical results and existing experimental results.

ENTRAINMENT BY LIGAMENT-CONTROLLED EFFERVESCENT ATOMIZER-PRODUCED SPRAYS

EPA Science Inventory

Entrainment of ambient air into sprays produced by a new type of effervescent atomizer is reported. Entrainment data were obtained using a device similar to that described by Ricou & Spalding (1961). Entrainment data were analyzed using the model of Bush & Sojka (1994), in concer...

Air Entrainment and Surface Ripples in a Turbulent Ship Hull Boundary Layer

NASA Astrophysics Data System (ADS)

Masnadi, Naeem; Erinin, Martin; Duncan, James H.

2017-11-01

The air entrainment and free-surface fluctuations caused by the interaction of a free surface and the turbulent boundary layer of a vertical surface-piercing plate is studied experimentally. In this experiment, a meter-wide stainless steel belt travels horizontally in a loop around two rollers with vertically oriented axes. This belt device is mounted inside a large water tank with the water level set just below the top edge of the belt. The belt, rollers, and supporting frame are contained within a sheet metal box to keep the device dry except for one 6-meter-long straight test section. The belt is accelerated suddenly from rest until reaching constant speed in order to create a temporally evolving boundary layer analogous to the spatially evolving boundary layer that would exist along a surface-piercing towed flat plate. Surface ripples are measured using a cinematic laser-induced fluorescence technique with the laser sheet oriented parallel or normal to the belt surface. Air entrainment events and bubble motions are recorded from underneath the water surface using a stereo imaging system. Measurements of small bubbles, that tend to stay submerged for a longer time, are planned via a high-speed digital in-line holographic system. The support of the Office of Naval Research is gratefully acknowledged.

Broadening of cloud droplet spectra through turbulent entrainment and eddy hopping

NASA Astrophysics Data System (ADS)

Abade, Gustavo; Grabowski, Wojciech; Pawlowska, Hanna

2017-11-01

This work discusses the effect of cloud turbulence and turbulent entrainment on the evolution of the cloud droplet-size spectrum. We simulate an ensemble of idealized turbulent cloud parcels that are subject to entrainment events, modeled as a random Poisson process. Entrainment events, subsequent turbulent mixing inside the parcel, supersaturation fluctuations, and the resulting stochastic droplet growth by condensation are simulated using a Monte Carlo scheme. Quantities characterizing the turbulence intensity, entrainment rate and the mean fraction of environmental air entrained in an event are specified as external parameters. Cloud microphysics is described by applying Lagrangian particles, the so-called superdroplets. They are either unactivated cloud condensation nuclei (CCN) or cloud droplets that form from activated CCN. The model accounts for the transport of environmental CCN into the cloud by the entraining eddies at the cloud edge. Turbulent mixing of the entrained dry air with cloudy air is described using a linear model. We show that turbulence plays an important role in aiding entrained CCN to activate, providing a source of small cloud droplets and thus broadening the droplet size distribution. Further simulation results will be reported at the meeting.

Experimental and computational study and development of the bituminous coal entrained-flow air-blown gasifier for IGCC

NASA Astrophysics Data System (ADS)

Abaimov, N. A.; Osipov, P. V.; Ryzhkov, A. F.

2016-10-01

In the paper the development of the advanced bituminous coal entrained-flow air- blown gasifier for the high power integrated gasification combined cycle is considered. The computational fluid dynamics technique is used as the basic development tool. The experiment on the pressurized entrained-flow gasifier was performed by “NPO CKTI” JSC for the thermochemical processes submodel verification. The kinetic constants for Kuznetsk bituminous coal (flame coal), obtained by thermal gravimetric analysis method, are used in the model. The calculation results obtained by the CFD model are in satisfactory agreements with experimental data. On the basis of the verified model the advanced gasifier structure was suggested which permits to increase the hydrogen content in the synthesis gas and consequently to improve the gas turbine efficiency. In order to meet the specified requirements vapor is added on the second stage of MHI type gasifier and heat necessary for air gasification is compensated by supplemental heating of the blasting air.

An observational study of entrainment rate in deep convection

DOE PAGES

Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; ...

2015-09-22

This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal,more » gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.« less

An observational study of entrainment rate in deep convection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang

This study estimates entrainment rate and investigates its relationships with cloud properties in 156 deep convective clouds based on in-situ aircraft observations during the TOGA-COARE (Tropical Ocean Global Atmosphere Coupled Ocean Atmosphere Response Experiment) field campaign over the western Pacific. To the authors’ knowledge, this is the first study on the probability density function of entrainment rate, the relationships between entrainment rate and cloud microphysics, and the effects of dry air sources on the calculated entrainment rate in deep convection from an observational perspective. Results show that the probability density function of entrainment rate can be well fitted by lognormal,more » gamma or Weibull distribution, with coefficients of determination being 0.82, 0.85 and 0.80, respectively. Entrainment tends to reduce temperature, water vapor content and moist static energy in cloud due to evaporative cooling and dilution. Inspection of the relationships between entrainment rate and microphysical properties reveals a negative correlation between volume-mean radius and entrainment rate, suggesting the potential dominance of homogeneous mechanism in the clouds examined. The entrainment rate and environmental water vapor content show similar tendencies of variation with the distance of the assumed environmental air to the cloud edges. Their variation tendencies are non-monotonic due to the relatively short distance between adjacent clouds.« less

Large Field of View PIV Measurements of Air Entrainment by SLS SMAT Water Sound Suppression System

NASA Astrophysics Data System (ADS)

Stegmeir, Matthew; Pothos, Stamatios; Bissell, Dan

2015-11-01

Water-based sound suppressions systems have been used to reduce the acoustic impact of space vehicle launches. Water flows at a high rate during launch in order to suppress Engine Generated Acoustics and other potentially damaging sources of noise. For the Space Shuttle, peak flow rates exceeded 900,000 gallons per minute. Such large water flow rates have the potential to induce substantial entrainment of the surrounding air, affecting the launch conditions and generating airflow around the launch vehicle. Validation testing is necessary to quantify this impact for future space launch systems. In this study, PIV measurements were performed to map the flow field above the SMAT sub-scale launch vehicle scaled launch stand. Air entrainment effects generated by a water-based sound suppression system were studied. Mean and fluctuating fluid velocities were mapped up to 1m above the test stand deck and compared to simulation results. Measurements performed with NASA MSFC.

Entrainment vs. Dilution in Tropical Deep Convection

NASA Astrophysics Data System (ADS)

Hannah, W.

2017-12-01

The distinction between entrainment and dilution is investigated with cloud resolving simulations of deep convection in a tropical environment. A method for estimating the rate of dilution by entrainment and detrainment is calculated for a series of bubble simulations with a range of initial radii. Entrainment generally corresponds to dilution of convection, but the two quantities are not well correlated. Core dilution by entrainment is significantly reduced by the presence of a shell of moist air around the core. Entrainment contributes significantly to the total net dilution, but detrainment and the various source/sink terms play large roles depending on the variable in question. Detrainment has a concentrating effect on average that balances out the dilution by entrainment. The experiments are also used to examine whether entrainment or dilution scale with cloud radius. The results support a weak negative relationship for dilution, but not for entrainment. The sensitivity to resolution is briefly discussed. A toy Lagrangian thermal model is used to demonstrate the importance of the cloud shell as a thermodynamic buffer to reduce the dilution of the core by entrainment. The results suggest that explicit cloud heterogeneity may be a useful consideration for future convective parameterization development.

Cloud-Top Entrainment in Stratocumulus Clouds

NASA Astrophysics Data System (ADS)

Mellado, Juan Pedro

2017-01-01

Cloud entrainment, the mixing between cloudy and clear air at the boundary of clouds, constitutes one paradigm for the relevance of small scales in the Earth system: By regulating cloud lifetimes, meter- and submeter-scale processes at cloud boundaries can influence planetary-scale properties. Understanding cloud entrainment is difficult given the complexity and diversity of the associated phenomena, which include turbulence entrainment within a stratified medium, convective instabilities driven by radiative and evaporative cooling, shear instabilities, and cloud microphysics. Obtaining accurate data at the required small scales is also challenging, for both simulations and measurements. During the past few decades, however, high-resolution simulations and measurements have greatly advanced our understanding of the main mechanisms controlling cloud entrainment. This article reviews some of these advances, focusing on stratocumulus clouds, and indicates remaining challenges.

Measurement of admixture proportions and description of admixture structure in different US populations

PubMed Central

Halder, Indrani; Yang, Bao-Zhu; Kranzler, Henry R.; Stein, Murray B.; Shriver, Mark D.; Gelernter, Joel

2010-01-01

Variation in individual admixture proportions leads to heterogeneity within populations. Though novel methods and marker panels have been developed to quantify individual admixture, empirical data describing individual admixture distributions are limited. We investigated variation in individual admixture in four US populations [European American (EA), African American (AA) and Hispanics from Connecticut (EC) and California (WC)] assuming three-way intermixture among Europeans, Africans and Indigenous Americans. Admixture estimates were inferred using a panel of 36 microsatellites and 1 SNP, which have significant allele frequency differences between ancestral populations, and by using both a maximum likelihood (ML) based method and a Bayesian method implemented in the program STRUCTURE. Simulation studies showed that estimates obtained with this marker panel are within 96% of expected values. EAs had the lowest non-European admixture with both methods, but showed greater homogeneity with STRUCTURE than with ML. All other samples showed a high degree of variation in admixture estimates with both methods, were highly concordant and showed evidence of admixture stratification. With both methods, AA subjects had 16% European and <10% Indigenous American admixture on average. EC Hispanics had higher mean African admixture and the WC Hispanics higher mean Indigenous American admixture, possibly reflecting their different continental origins. PMID:19572378

Entrainment versus Dilution in Tropical Deep Convection

DOE PAGES

Hannah, Walter M.

2017-11-01

In this paper, the distinction between entrainment and dilution is investigated with cloud-resolving simulations of deep convection in a tropical environment. A method for estimating the rate of dilution by entrainment and detrainment is presented and calculated for a series of bubble simulations with a range of initial radii. Entrainment generally corresponds to dilution of convection, but the two quantities are not well correlated. Core dilution by entrainment is significantly reduced by the presence of a shell of moist air around the core. Dilution by entrainment also increases with increasing updraft velocity but only for sufficiently strong updrafts. Entrainment contributesmore » significantly to the total net dilution, but detrainment and the various source/sink terms play large roles depending on the variable in question. Detrainment has a concentrating effect on average that balances out the dilution by entrainment. The experiments are also used to examine whether entrainment or dilution scale with cloud radius. The results support a weak negative relationship for dilution but not for entrainment. The sensitivity to resolution is briefly discussed. A toy Lagrangian thermal model is used to demonstrate the importance of the cloud shell as a thermodynamic buffer to reduce the dilution of the core by entrainment. Finally, the results suggest that explicit cloud heterogeneity may be a useful consideration for future convective parameterization development.« less

A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 2; Simulations of Cumulonimbus Clouds

NASA Technical Reports Server (NTRS)

Cohen, Charles

1998-01-01

Deep cumulonimbus clouds are simulated using a model that makes accurate diagnoses of entrainment and detrainment rates and of the properties of entrained and detrained air. Clouds generated by a variety of initial thermodynamic soundings are compared. In the simulations, updraft entrainment rates are large near and above cloud base, through the entire depth of the conditionally unstable layer. Stronger updrafts in a more unstable environment are better able to entrain relatively undisturbed environmental air, while weaker updrafts can entrain only air that has been modified by the clouds. When the maximum buoyancy is large, the updraft includes parcels with a wide range of buoyancies, while weaker clouds are more horizontally uniform. Strong downdrafts originate from levels at which updrafts detrain, and their mass flux depends on the mass flux of the updraft. The magnitude of mixing between cloud and environment, not the entrainment rate, varies inversely with the cloud radius. How much of the mixed air is entrained depends on the buoyancy.

Entrainment of stratospheric air and Asian pollution by the convective boundary layer in the southwestern U.S.

NASA Astrophysics Data System (ADS)

Langford, A. O.; Alvarez, R. J.; Brioude, J.; Fine, R.; Gustin, M. S.; Lin, M. Y.; Marchbanks, R. D.; Pierce, R. B.; Sandberg, S. P.; Senff, C. J.; Weickmann, A. M.; Williams, E. J.

2017-01-01

A series of deep stratospheric intrusions in late May 2013 increased the daily maximum 8 h surface ozone (O3) concentrations to more than 70 parts per billion by volume (ppbv) at rural and urban surface monitors in California and Nevada. This influx of ozone-rich lower stratospheric air and entrained Asian pollution persisted for more than 5 days and contributed to exceedances of the 2008 8 h national ambient air quality standard of 75 ppbv on 21 and 25 May in Clark County, NV. Exceedances would also have occurred on 22 and 23 May had the new standard of 70 ppbv been in effect. In this paper, we examine this episode using lidar measurements from a high-elevation site on Angel Peak, NV, and surface measurements from NOAA, the Clark County, Nevada Department of Air Quality, the Environmental Protection Agency Air Quality System, and the Nevada Rural Ozone Initiative. These measurements, together with analyses from the National Centers for Environmental Prediction/North American Regional Reanalysis; NOAA Geophysical Fluid Dynamics Laboratory AM3 model; NOAA National Environmental Satellite, Data, and Information Service Real-time Air Quality Modeling System; and FLEXPART models, show that the exceedances followed entrainment of 20 to 40 ppbv of lower stratospheric ozone mingled with another 0 to 10 ppbv of ozone transported from Asia by the unusually deep convective boundary layers above the Mojave desert. Our analysis suggests that this vigorous mixing can affect both high and low elevations and help explain the springtime ozone maximum in the southwestern U.S.

Keeping warm with fur in cold water: entrainment of air in hairy surfaces

NASA Astrophysics Data System (ADS)

Nasto, Alice; Regli, Marianne; Brun, Pierre-Thomas; Clanet, Christophe; Hosoi, Anette

2015-11-01

Instead of relying on a thick layer of body fat for insulation as many aquatic mammals do, fur seals and otters trap air in their dense fur for insulation in cold water. Using a combination of model experiments and theory, we rationalize this mechanism of air trapping underwater for thermoregulation. For the model experiments, hairy surfaces are fabricated using laser cut molds and casting samples with PDMS. Modeling the hairy texture as a network of capillary tubes, the imbibition speed of water into the hairs is obtained through a balance of hydrostatic pressure and viscous stress. In this scenario, the bending of the hairs and capillary forces are negligible. The maximum diving depth that can be achieved before the hairs are wetted to the roots is predicted from a comparison of the diving speed and imbibition speed. The amount of air that is entrained in hairy surfaces is greater than what is expected for classic Landau-Levich-Derjaguin plate plunging. A phase diagram with the parameters from experiments and biological data allows a comparison of the model system and animals.

Increasing jet entrainment, mixing and spreading

DOEpatents

Farrington, Robert B.

1994-01-01

A free jet of air is disturbed at a frequency that substantially matches natural turbulences in the free jet to increase the entrainment, mixing, and spreading of air by the free jet, for example in a room or other enclosure. The disturbances are created by pulsing the flow of air that creates the free jet at the desired frequency. Such pulsing of the flow of air can be accomplished by sequentially occluding and opening a duct that confines and directs the flow of air, such as by rotating a disk on an axis transverse to the flow of air in the duct.

Re-entrained road dust PM10 emission from selected streets of Krakow and its impact on air quality

NASA Astrophysics Data System (ADS)

Bogacki, Marek; Mazur, Marian; Oleniacz, Robert; Rzeszutek, Mateusz; Szulecka, Adriana

2018-01-01

Scientific research studies conducted in various parts of the world confirm that PM10 concentrations in urban air depend to a great extent on the resuspension processes of the dust deposited on the road surface. The paper presents the results of the study related to the determination of the re-entrained PM10 emissions from four selected streets of Krakow (Southern Poland) together with the assessment of its impact on air quality. Examined streets are characterised by different traffic intensity (from 500 to over 20 000 vehicles per day) and individual vehicle structure. Dust material sampling and estimation of the PM10 emission were conducted according to the U.S. EPA methodology (AP 42 Fifth Edition). Two variants of sample collection were applied: from the road surface including the area at the curb (4 streets) and from the road surface alone (1 street). The estimates of resuspended road dust emission as well as the reference values derived from the U.S. EPA guidelines were used to assess the impact of this emission on the PM10 levels in the air at the location of one of the analysed streets. This assessment was conducted using the CALINE4 mathematical model. The study showed that the PM10 emissions from the re-entrained road dust can be responsible for up to 25 % in the winter and 50 % in the summer of the total PM10 concentrations in the air near the roads.

Increasing jet entrainment, mixing and spreading

DOEpatents

Farrington, R.B.

1994-08-16

A free jet of air is disturbed at a frequency that substantially matches natural turbulences in the free jet to increase the entrainment, mixing, and spreading of air by the free jet, for example in a room or other enclosure. The disturbances are created by pulsing the flow of air that creates the free jet at the desired frequency. Such pulsing of the flow of air can be accomplished by sequentially occluding and opening a duct that confines and directs the flow of air, such as by rotating a disk on an axis transverse to the flow of air in the duct. 11 figs.

Stability of nitroglycerin in intravenous admixtures.

PubMed

Klamerus, K J; Ueda, C T; Newton, D W

1984-02-01

The stability of nitroglycerin in intravenous admixtures was studied. Admixtures containing nitroglycerin 400 micrograms/ml and each of seven injectable drugs in concentrations used clinically were prepared in triplicate in 5% dextrose and 0.9% sodium chloride injections. Admixtures were stored in glass bottles at room temperature for 24 hours in the upright position and then for 24 hours in the inverted position to ensure contact of the solution with the rubber stopper of the container. At 0, 24, and 48 hours, samples of each admixture were assayed by high-performance liquid chromatography for nitroglycerin concentration. The pH of one randomly chosen bottle of each admixture was measured at 0, 24, and 48 hours. A significant loss of nitroglycerin potency at 48 hours was observed only in admixtures containing phenytoin; in these solutions, a 9% decrease in initial nitroglycerin concentration was noted. Phenytoin crystallization was present in all phenytoin admixtures by 24 hours. Compared with initial values, no significant differences in the pH values of any admixture samples assayed at 24 and 48 hours were noted; however, admixtures containing phenytoin had the most alkaline pH values. Under the conditions studied, nitroglycerin concentrations remained above 90% of their initial values for 48 hours in all tested admixtures; however, phenytoin crystallization limits the stability of phenytoin admixtures.

ENTRAINMENT MODELS

EPA Science Inventory

This presentation presented information on entrainment models. Entrainment models use entrainment hypotheses to express the continuity equation. The advantage is that plume boundaries are known. A major disadvantage is that the problems that can be solved are rather simple. The ...

Autogenous accelerated curing of concrete cylinders. Part IV, Moisture relationships.

DOT National Transportation Integrated Search

1971-01-01

Eighteen different concrete mixtures were proportioned to investigate the influence of cement types (II and III), water cement ratios (0.4, 0.5, and 0.6), and admixtures (accelerator, retarder, and air entraining agent) on the moisture changes during...

The Stochastic Parcel Model: A deterministic parameterization of stochastically entraining convection

DOE PAGES

Romps, David M.

2016-03-01

Convective entrainment is a process that is poorly represented in existing convective parameterizations. By many estimates, convective entrainment is the leading source of error in global climate models. As a potential remedy, an Eulerian implementation of the Stochastic Parcel Model (SPM) is presented here as a convective parameterization that treats entrainment in a physically realistic and computationally efficient way. Drawing on evidence that convecting clouds comprise air parcels subject to Poisson-process entrainment events, the SPM calculates the deterministic limit of an infinite number of such parcels. For computational efficiency, the SPM groups parcels at each height by their purity, whichmore » is a measure of their total entrainment up to that height. This reduces the calculation of convective fluxes to a sequence of matrix multiplications. The SPM is implemented in a single-column model and compared with a large-eddy simulation of deep convection.« less

Admixture in Hispanic-Americans: Its impact on ITGAM association and implications for admixture mapping in SLE

PubMed Central

Molineros, Julio E.; Kim-Howard, Xana; Deshmukh, Harshal; Jacob, Chaim O.; Harley, John B.; Nath, Swapan K.

2009-01-01

Systemic Lupus Erythematosus (SLE) disproportionately affects minorities, such as Hispanic-Americans. Prevalence of SLE is 3–5 times higher in Hispanic Americans (HA) than European derived populations, and have more active disease at the time of diagnosis, with more serious organ system involvement. HA is an admixed population, it is possible that there is an effect of admixture on the relative risk of disease. This admixture can create substantial increase of linkage disequilibrium (LD) in both magnitude and range, which can provide a unique opportunity for admixture mapping. Main objectives of this study are to (a) estimate hidden population structure in HA individuals; (b) estimate individual ancestry proportions and its impact on SLE risk; (c) assess impact of admixture on ITGAM association, a recently identified SLE susceptibility gene; and (d) estimate power of admixture mapping in HA. Our dataset contained 1,125 individuals, of whom 884 (657 SLE cases and 227 controls) were self classified as HA. Using 107 unlinked ancestry informative markers (AIMs) we estimated hidden population structure and individual ancestry in HA. Out of 5,671 possible pair-wise LD, 54% were statistically significant, indicating recent population admixture. The best fitted model for HA was a four population model with average ancestry of European (48%), American-Indian (40%), African (8%) and a fourth population (4%) with unknown ancestry. We also identified significant higher risk associated with American-Indian ancestry (OR=4.84, P=0.0001, 95%CI=2.14—10.95) on overall SLE. We showed that ITGAM is associated as a risk factor for SLE (OR= 2.06, P=8.74×10−5, 95%CI=1.44–2.97). This association is not affected by population substructure or admixture. We have demonstrated that HA have great potential and are an 3 appropriate population for admixture mapping. As expected, the case-only design is more powerful than case-control design, for any given admixture proportion or ancestry

Admixture in Hispanic Americans: its impact on ITGAM association and implications for admixture mapping in SLE.

PubMed

Molineros, J E; Kim-Howard, X; Deshmukh, H; Jacob, C O; Harley, J B; Nath, S K

2009-07-01

Systemic Lupus Erythematosus (SLE) disproportionately affects minorities, such as Hispanic Americans (HA). Prevalence of SLE is 3-5 times higher in HA than in European-derived populations and have more active disease at the time of diagnosis, with more serious organ system involvement. HA is an admixed population, it is possible that there is an effect of admixture on the relative risk of the disease. This admixture can create substantial increase of linkage disequilibrium (LD) in both magnitude and range, which can provide a unique opportunity for admixture mapping. The main objectives of this study are to (a) estimate hidden population structure in HA individuals; (b) estimate individual ancestry proportions and its impact on SLE risk; (c) assess impact of admixture on ITGAM association, a recently identified SLE susceptibility gene; and (d) estimate power of admixture mapping in HA. Our dataset contained 1125 individuals, of whom 884 (657 SLE cases and 227 controls) were self-classified as HA. Using 107 unlinked ancestry informative markers (AIMs), we estimated hidden population structure and individual ancestry in HA. Out of 5671 possible pairwise LD, 54% were statistically significant, indicating recent population admixture. The best-fitted model for HA was a four-population model with average ancestry of European (48%), American-Indian (AI) (40%), African (8%) and a fourth population (4%) with unknown ancestry. We also identified significant higher risk associated with AI ancestry (odds ratio (OR)=4.84, P=0.0001, 95% CI (confidence interval)=2.14-10.95) on overall SLE. We showed that ITGAM is associated as a risk factor for SLE (OR=2.06, P=8.74 x 10(-5), 95% CI=1.44-2.97). This association is not affected by population substructure or admixture. We have shown that HA have great potential and are an appropriate population for admixture mapping. As expected, the case-only design is more powerful than case-control design, for any given admixture proportion or

Effect of particle entrainment on the runout of pyroclastic density currents

NASA Astrophysics Data System (ADS)

Fauria, Kristen E.; Manga, Michael; Chamberlain, Michael

2016-09-01

Pyroclastic density currents (PDCs) can erode soil and bedrock, yet we currently lack a mechanistic understanding of particle entrainment that can be incorporated into models and used to understand how PDC bulking affects runout. Here we quantify how particle splash, the ejection of particles due to impact by a projectile, entrains particles into dilute PDCs. We use scaled laboratory experiments to measure the mass of sand ejected by impacts of pumice, wood, and nylon spheres. We then derive an expression for particle splash that we validate with our experimental results as well as results from seven other studies. We find that the number of ejected particles scales with the kinetic energy of the impactor and the depth of the crater generated by the impactor. Last, we use a one-dimensional model of a dilute, compressible density current—where runout distance is controlled by air entrainment and particle exchange with the substrate—to examine how particle entrainment by splash affects PDC density and runout. Splash-driven particle entrainment can increase the runout distance of dilute PDCs by an order of magnitude. Furthermore, the temperature of entrained particles greatly affects runout and PDCs that entrain ambient temperature particles runout farther than those that entrain hot particles. Particle entrainment by splash therefore not only increases the runout of dilute PDCs but demonstrates that the temperature and composition of the lower boundary have consequences for PDC density, temperature, runout, hazards and depositional record.

Quantifying entrainment in pyroclastic density currents from the Tungurahua eruption, Ecuador: Integrating field proxies with numerical simulations

NASA Astrophysics Data System (ADS)

Benage, M. C.; Dufek, J.; Mothes, P. A.

2016-07-01

The entrainment of air into pyroclastic density currents (PDCs) impacts the dynamics and thermal history of these highly mobile currents. However, direct measurement of entrainment in PDCs is hampered due to hazardous conditions and opaqueness of these flows. We combine three-dimensional multiphase Eulerian-Eulerian-Lagrangian calculations with proxies of thermal conditions preserved in deposits to quantify air entrainment in PDCs at Tungurahua volcano, Ecuador. We conclude that small-volume PDCs develop a particle concentration gradient that results in disparate thermal characteristics for the concentrated bed load (>600 to ~800 K) and the overlying dilute suspended load (~300-600 K). The dilute suspended load has effective entrainment coefficients 2-3 times larger than the bed load. This investigation reveals a dichotomy in entrainment and thermal history between two regions in the current and provides a mechanism to interpret the depositional thermal characteristics of small-volume but frequently occurring PDCs.

Investigating the Sensitivity of Model Intraseasonal Variability to Minimum Entrainment

NASA Astrophysics Data System (ADS)

Hannah, W. M.; Maloney, E. D.

2008-12-01

Previous studies have shown that using a Relaxed Arakawa-Schubert (RAS) convective parameterization with appropriate convective triggers and assumptions about rain re-evaporation produces realistic intraseasonal variability. RAS represents convection with an ensemble of clouds detraining at different heights, each with different entrainment rate, the highest clouds having the lowest entrainment rates. If tropospheric temperature gradients are weak and boundary layer moist static energy is relatively constant, then by limiting the minimum entrainment rate deep convection is suppressed in the presence of dry tropospheric air. This allows moist static energy to accumulate and be discharged during strong intraseasonal convective events, which is consistent with the discharge/recharge paradigm. This study will examine the sensitivity of intra-seasonal variability to changes in minimum entrainment rate in the NCAR-CAM3 with the RAS scheme. Simulations using several minimum entrainment rate thresholds will be investigated. A frequency-wavenumber analysis will show the improvement of the MJO signal as minimum entrainment rate is increased. The spatial and vertical structure of MJO-like disturbances will be examined, including an analysis of the time evolution of vertical humidity distribution for each simulation. Simulated results will be compared to observed MJO events in NCEP-1 reanalysis and CMAP precipitation.

A Genome-wide Analysis of Admixture in Uyghurs and a High-Density Admixture Map for Disease-Gene Discovery

PubMed Central

Xu, Shuhua; Jin, Li

2008-01-01

Following up on our previous study, we conducted a genome-wide analysis of admixture for two Uyghur population samples (HGDP-UG and PanAsia-UG), collected from the northern and southern regions of Xinjiang in China, respectively. Both HGDP-UG and PanAsia-UG showed a substantial admixture of East-Asian (EAS) and European (EUR) ancestries, with an empirical estimation of ancestry contribution of 53:47 (EAS:EUR) and 48:52 for HGDP-UG and PanAsia-UG, respectively. The effective admixture time under a model with a single pulse of admixture was estimated as 110 generations and 129 generations, or admixture events occurred about 2200 and 2580 years ago for HGDP-UG and PanAsia-UG, respectively, assuming an average of 20 yr per generation. Despite Uyghurs' earlier history compared to other admixture populations, admixture mapping, holds promise for this population, because of its large size and its mixture of ancestry from different continents. We screened multiple databases and identified a genome-wide single-nucleotide polymorphism panel that can distinguish EAS and EUR ancestry of chromosomal segments in Uyghurs. The panel contains 8150 ancestry-informative markers (AIMs) showing large frequency differences between EAS and EUR populations (FST > 0.25, mean FST = 0.43) but small frequency differences (7999 AIMs validated) within both populations (FST < 0.05, mean FST < 0.01). We evaluated the effectiveness of this admixture map for localizing disease genes in two Uyghur populations. To our knowledge, our map constitutes the first practical resource for admixture mapping in Uyghurs, and it will enable studies of diseases showing differences in genetic risk between EUR and EAS populations. PMID:18760393

A Quantitative Investigation of Entrainment and Detrainment in Numerically Simulated Convective Clouds. Pt. 1; Model Development

NASA Technical Reports Server (NTRS)

Cohen, Charles

1998-01-01

A method is developed which uses numerical tracers to make accurate diagnoses of entraimnent and detrainment rates and of the properties of the entrained and detrained air in numerically simulated clouds. The numerical advection scheme is modified to make it nondispersive, as required by the use of the tracers. Tests of the new method are made, and an appropriate definition of clouds is selected. Distributions of mixing fractions in the model consistently show maximums at the end points, for nearly undilute environmental air or nearly undilute cloud air, with a uniform distribution between. The cumulonimbus clouds simulated here entrain air that had been substantially changed by the clouds, and detrained air that is not necessarily representative of the cloud air at the same level.

Lidar measurements of the atmospheric entrainment zone and the potential temperature jump across the top of the mixed layer

NASA Technical Reports Server (NTRS)

Boers, R.; Eloranta, E. W.

1986-01-01

Lidar data of the atmospheric entrainment zone from six days of clear air convection obtained in central Illinois during July 1979 are presented. A new method to measure the potential temperature jump across the entrainment zone based on only one temperature sounding and continuous lidar measurements of the mixed layer height is developed. An almost linear dependence is found between the normalized entrainment rate and the normalized thickness of the entrainment zone.

Effect of Various Parameters on Evolution of 2D Free Jets and their Associated Entrainment Rates

NASA Astrophysics Data System (ADS)

Amin, Mazyar; Dabiri, Dana; Navaz, Homayun

2006-11-01

Refrigerated vertical display cases are extensively used in supermarkets and grocery stores. Cold air is supplied vertically across the open face of the display case from the top, creating a cold air curtain acting as a barrier to separate the cold air within the case from the warm ambient air. Typically, 70-80% of the load on these vertical display cases is due to cooling of infiltrated warm ambient air. Our goal is to understand parameters affecting warm air infiltration into the case so as to minimize the cooling load. Towards this end, steady state behavior of 2D vertical air jets at Reynolds numbers 2,000 to 10,000 with low and high turbulence intensities (0% &10%) at the nozzle exit are experimentally and computationally investigated both within a quiescent ambient and next to an open cavity. Four different velocity profile shapes (top-hat, parabola, skewed parabola and linear) at the jet exit are also studied to determine profile effects on the evolution of and entrainment into the jet. Results will be presented to show the effect of these parameters on the total entrainment into the jet, as well as the variation of entrainment across the jet at different downstream locations. The results of this work can help better understand how to design air curtains as a buffer to minimize infiltration into open refrigerated vertical display cases.

The entrainment rate for a row of turbulent jets. M.S. Thesis Final Report

NASA Technical Reports Server (NTRS)

Gordon, Eliott B.; Greber, Isaac

1990-01-01

Entrainment rates for a row of isothermal circular air jets issuing into a quiescent environment are found by integrating velocity distributions measured by a linearized hot-wire anemometer. Jet spacing to jet diameter ratios of 2.5, 5, 10, and 20 are studied at jet Reynold's numbers ranging from 5110 to 12070. Velocity distributions are determined at regular downstream intervals at axial distances equal to 16.4 to 164 jet diameters from the jet source. The entrainment rates for the four spacing configurations vary monotonically with increasing spacing/diameter between the limiting case of the slot jet entrainment rate (where the jet spacing to diameter ratio is zero) and the circular jet entrainment rate (in which the spacing to diameter ratio is infinity).

Portland cement concrete air content study.

DOT National Transportation Integrated Search

1987-04-20

This study took the analysis of Portland cement concrete air content. Based on the information gathered, this study hold the results were : 1) air-entrained concrete was more durable than non-air entrained concrete all other factors being equal; 2) A...

The admixture structure and genetic variation of the archipelago of Cape Verde and its implications for admixture mapping studies.

PubMed

Beleza, Sandra; Campos, Joana; Lopes, Jailson; Araújo, Isabel Inês; Hoppfer Almada, Ana; Correia e Silva, António; Parra, Esteban J; Rocha, Jorge

2012-01-01

Recently admixed populations offer unique opportunities for studying human history and for elucidating the genetic basis of complex traits that differ in prevalence between human populations. Historical records, classical protein markers, and preliminary genetic data indicate that the Cape Verde islands in West Africa are highly admixed and primarily descended from European males and African females. However, little is known about the variation in admixture levels, admixture dynamics and genetic diversity across the islands, or about the potential of Cape Verde for admixture mapping studies. We have performed a detailed analysis of phenotypic and genetic variation in Cape Verde based on objective skin color measurements, socio-economic status (SES) evaluations and data for 50 autosomal, 34 X-chromosome, and 21 non-recombinant Y-chromosome (NRY) markers in 845 individuals from six islands of the archipelago. We find extensive genetic admixture between European and African ancestral populations (mean West African ancestry = 0.57, sd = 0.08), with individual African ancestry proportions varying considerably among the islands. African ancestry proportions calculated with X and Y-chromosome markers confirm that the pattern of admixture has been sex-biased. The high-resolution NRY-STRs reveal additional patterns of variation among the islands that are most consistent with differentiation after admixture. The differences in the autosomal admixture proportions are clearly evident in the skin color distribution across the islands (Pearson r = 0.54, P-value<2e-16). Despite this strong correlation, there are significant interactions between SES and skin color that are independent of the relationship between skin color and genetic ancestry. The observed distributions of admixture, genetic variation and skin color and the relationship of skin color with SES relate to historical and social events taking place during the settlement history of Cape Verde, and have implications for

The Admixture Structure and Genetic Variation of the Archipelago of Cape Verde and Its Implications for Admixture Mapping Studies

PubMed Central

Beleza, Sandra; Campos, Joana; Lopes, Jailson; Araújo, Isabel Inês; Hoppfer Almada, Ana; e Silva, António Correia; Parra, Esteban J.; Rocha, Jorge

2012-01-01

Recently admixed populations offer unique opportunities for studying human history and for elucidating the genetic basis of complex traits that differ in prevalence between human populations. Historical records, classical protein markers, and preliminary genetic data indicate that the Cape Verde islands in West Africa are highly admixed and primarily descended from European males and African females. However, little is known about the variation in admixture levels, admixture dynamics and genetic diversity across the islands, or about the potential of Cape Verde for admixture mapping studies. We have performed a detailed analysis of phenotypic and genetic variation in Cape Verde based on objective skin color measurements, socio-economic status (SES) evaluations and data for 50 autosomal, 34 X-chromosome, and 21 non-recombinant Y-chromosome (NRY) markers in 845 individuals from six islands of the archipelago. We find extensive genetic admixture between European and African ancestral populations (mean West African ancestry = 0.57, sd = 0.08), with individual African ancestry proportions varying considerably among the islands. African ancestry proportions calculated with X and Y-chromosome markers confirm that the pattern of admixture has been sex-biased. The high-resolution NRY-STRs reveal additional patterns of variation among the islands that are most consistent with differentiation after admixture. The differences in the autosomal admixture proportions are clearly evident in the skin color distribution across the islands (Pearson r = 0.54, P-value<2e–16). Despite this strong correlation, there are significant interactions between SES and skin color that are independent of the relationship between skin color and genetic ancestry. The observed distributions of admixture, genetic variation and skin color and the relationship of skin color with SES relate to historical and social events taking place during the settlement history of Cape Verde, and have

Scale-dependent entrainment velocity and scale-independent net entrainment in a turbulent axisymmetric jet

NASA Astrophysics Data System (ADS)

Philip, Jimmy; Mistry, Dhiren; Dawson, James; Marusic, Ivan

2016-11-01

The net entrainment in a jet is the product of the mean surface area (S ̲) and the mean entrainment velocity, V ̲ S ̲ , where, V ̲ = αUc with α the entrainment coefficient and Uc the mean centreline velocity. Instantaneously, however, entrainment velocity (v) at a point on the interface is the difference between the interface and the fluid velocities, and the total entrainment ∫ vds = VS , where S is the corrugated interface surface area and V the area averaged entrainment velocity. Using time-resolved multi-scale PIV/PLIF measurements of velocity and scalar in an axisymmetric jet at Re = 25000 , we evaluate V and S directly at the smallest resolved scales, and by filtering the data at different scales (Δ) we find their multi-scales counterparts, VΔ and SΔ. We show that V ̲ S ̲ =VΔ SΔ = V S , independent of the scale. Furthermore, S is found to have a fractal dimension D3 2 . 32 +/- 0 . 1 . Independently, we find that VΔ Δ 0 . 31 , indicating increasing entrainment velocity with increasing length scale. This is consistent with a constant net entrainment across scales, and suggests α as a scale-dependent quantity. Engineering and Physical Sciences Research Council (research Grant No. EP/I005879/1), David Crighton Fellowship from the DAMTP, Univ of Cambridge, and the Australian Research Council.

A Coalescent-Based Estimator of Admixture From DNA Sequences

PubMed Central

Wang, Jinliang

2006-01-01

A variety of estimators have been developed to use genetic marker information in inferring the admixture proportions (parental contributions) of a hybrid population. The majority of these estimators used allele frequency data, ignored molecular information that is available in markers such as microsatellites and DNA sequences, and assumed that mutations are absent since the admixture event. As a result, these estimators may fail to deliver an estimate or give rather poor estimates when admixture is ancient and thus mutations are not negligible. A previous molecular estimator based its inference of admixture proportions on the average coalescent times between pairs of genes taken from within and between populations. In this article I propose an estimator that considers the entire genealogy of all of the sampled genes and infers admixture proportions from the numbers of segregating sites in DNA sequence samples. By considering the genealogy of all sequences rather than pairs of sequences, this new estimator also allows the joint estimation of other interesting parameters in the admixture model, such as admixture time, divergence time, population size, and mutation rate. Comparative analyses of simulated data indicate that the new coalescent estimator generally yields better estimates of admixture proportions than the previous molecular estimator, especially when the parental populations are not highly differentiated. It also gives reasonably accurate estimates of other admixture parameters. A human mtDNA sequence data set was analyzed to demonstrate the method, and the analysis results are discussed and compared with those from previous studies. PMID:16624918

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

PubMed Central

Loh, Po-Ru; Lipson, Mark; Patterson, Nick; Moorjani, Priya; Pickrell, Joseph K.; Reich, David; Berger, Bonnie

2013-01-01

Long-range migrations and the resulting admixtures between populations have been important forces shaping human genetic diversity. Most existing methods for detecting and reconstructing historical admixture events are based on allele frequency divergences or patterns of ancestry segments in chromosomes of admixed individuals. An emerging new approach harnesses the exponential decay of admixture-induced linkage disequilibrium (LD) as a function of genetic distance. Here, we comprehensively develop LD-based inference into a versatile tool for investigating admixture. We present a new weighted LD statistic that can be used to infer mixture proportions as well as dates with fewer constraints on reference populations than previous methods. We define an LD-based three-population test for admixture and identify scenarios in which it can detect admixture events that previous formal tests cannot. We further show that we can uncover phylogenetic relationships among populations by comparing weighted LD curves obtained using a suite of references. Finally, we describe several improvements to the computation and fitting of weighted LD curves that greatly increase the robustness and speed of the calculations. We implement all of these advances in a software package, ALDER, which we validate in simulations and apply to test for admixture among all populations from the Human Genome Diversity Project (HGDP), highlighting insights into the admixture history of Central African Pygmies, Sardinians, and Japanese. PMID:23410830

Impact of reduced near-field entrainment of overpressured volcanic jets on plume development

USGS Publications Warehouse

Saffaraval, Farhad; Solovitz, Stephen A.; Ogden, Darcy E.; Mastin, Larry G.

2012-01-01

Volcanic plumes are often studied using one-dimensional analytical models, which use an empirical entrainment ratio to close the equations. Although this ratio is typically treated as constant, its value near the vent is significantly reduced due to flow development and overpressured conditions. To improve the accuracy of these models, a series of experiments was performed using particle image velocimetry, a high-accuracy, full-field velocity measurement technique. Experiments considered a high-speed jet with Reynolds numbers up to 467,000 and exit pressures up to 2.93 times atmospheric. Exit gas densities were also varied from 0.18 to 1.4 times that of air. The measured velocity was integrated to determine entrainment directly. For jets with exit pressures near atmospheric, entrainment was approximately 30% less than the fully developed level at 20 diameters from the exit. At pressures nearly three times that of the atmosphere, entrainment was 60% less. These results were introduced into Plumeria, a one-dimensional plume model, to examine the impact of reduced entrainment. The maximum column height was only slightly modified, but the critical radius for collapse was significantly reduced, decreasing by nearly a factor of two at moderate eruptive pressures.

Effects of Different Mineral Admixtures on the Properties of Fresh Concrete

PubMed Central

Nuruddin, Muhammad Fadhil; Shafiq, Nasir

2014-01-01

This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer. PMID:24701196

Effects of different mineral admixtures on the properties of fresh concrete.

PubMed

Khan, Sadaqat Ullah; Nuruddin, Muhammad Fadhil; Ayub, Tehmina; Shafiq, Nasir

2014-01-01

This paper presents a review of the properties of fresh concrete including workability, heat of hydration, setting time, bleeding, and reactivity by using mineral admixtures fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA). Comparison of normal and high-strength concrete in which cement has been partially supplemented by mineral admixture has been considered. It has been concluded that mineral admixtures may be categorized into two groups: chemically active mineral admixtures and microfiller mineral admixtures. Chemically active mineral admixtures decrease workability and setting time of concrete but increase the heat of hydration and reactivity. On the other hand, microfiller mineral admixtures increase workability and setting time of concrete but decrease the heat of hydration and reactivity. In general, small particle size and higher specific surface area of mineral admixture are favourable to produce highly dense and impermeable concrete; however, they cause low workability and demand more water which may be offset by adding effective superplasticizer.

Relationship between Hysterectomy and Admixture in African American Women

PubMed Central

Qi, Lihong; Nassir, Rami; Kosoy, Roman; Garcia, Lorena; Waetjen, L. Elaine; Ochs-Balcom, Heather M.; Gass, Margery; Robbins, John; Seldin, Michael F

2013-01-01

Objective Most studies suggest that hysterectomies are more common in African Americans than in other ethnic groups. To assess this ethnic surgical disparity in a novel way, our main goal was to determine whether admixture (the proportion of sub-Saharan African or European origin in individuals) is associated with hysterectomy frequency in African American women in the Women’s Health Initiative (WHI). Study Design In this retrospective study, we used ancestry informative single nucleotide polymorphisms (SNPs) to estimate admixture proportions in >10,000 African American women from the WHI. Logistic regression models were used to assess the association between admixture and self-reported history of hysterectomy with and without controlling for relevant covariates. Multinomial logistic regression models were used to assess the association between admixture and self-reported age of hysterectomy. We also considered other potential risk factors (adiposity, hypertension, and education) for hysterectomy accounting for admixture. Results African admixture was a strong risk factor after adjusting for multiple covariates (OR 1.85, P<.0001). The admixture risk for hysterectomy was highest for those performed in the 35–39 age range (OR 3.08, P<.0001) and least evident in oldest ages (45 or older). Our analyses also suggest that adiposity, hypertension and education were independently associated with hysterectomy in this population group. Conclusion These results suggest that higher African admixture is associated with higher frequencies of hysterectomy and that genetic studies specifically targeting African American women and diseases associated with hysterectomy may be especially useful in understanding the pathogenesis and underlying cause of this disparity in health outcome. PMID:23333549

Better estimates of Entrainment Mixing, Subsidence, and Photochemical Ozone Production using Aircraft and WRF data during the California Baseline Ozone Transport Study (CABOTS)

NASA Astrophysics Data System (ADS)

Trousdell, J.; Faloona, I. C.

2017-12-01

In situ flight data collected in the San Joaquin Valley of California during the summer of 2016 is used to measure boundary layer entrainment rates, ozone photochemical production, regional methane and NOx emissions. The San Joaquin Valley is plagued with air quality issues including a high frequency of ozone exceedances in the summer and an aerosol issue in the winter exacerbated by a complex mesoscale environment with a different mountain range on three sides creating an effective cul-de-sac which limits outflow and ventilation. In addition, higher elevation air brought over top of the valley can influence the valley air by entrainment at the top of the turbulent daytime atmospheric boundary layer. The flights were conducted during the California Baseline Ozone Transport Study (CABOTS). Flights are valley wide between the cities of Fresno and Visalia with a thorough probing of the atmospheric boundary layer (ABL) including vertical profiling to diagnose the ABL height and its growth rate. Entrainment velocities, which are the parameterized mixing of free tropospheric air into the boundary layer, are determined by a detailed budget equation of the inversion height. A novel scalar budgeting technique is then applied to expose residual terms of individual equations that amount to ozone photochemical production and emission rates, including; NOx and methane. The budget equations are closed out by our predicted entrainment velocities, time rate of change and horizontal advection all determined via flight data. The results of our NOx budget suggests that the California Air Resources Board emission estimates for soil NOx is grossly underestimated. A strong relationship between entrainment rates and vertical wind shear has been observed, suggesting a significant contribution to entrainment driven by vertical shear compared to the surface buoyancy flux which drives the turbulent vertical motions in the boundary layer.

Free-surface entrainment into a rimming flow containing surfactants

NASA Astrophysics Data System (ADS)

Thoroddsen, S. T.; Tan, Y.-K.

2004-02-01

We study experimentally the free-surface entrainment of tubes into a steady rimming flow formed inside a partially filled horizontally rotating cylinder. The liquid consists of a glycerin-water mixture containing surfactants (fatty acids). The phenomenon does not occur without the surfactants and the details are sensitive to their concentration. The entrainment of numerous closely spaced air tubes and/or surfactant columns can start intermittently along a two-dimensional stagnation line, but is usually associated with the appearance of an axially periodic vortex structure, the so-called shark teeth, which fixes the spanwise location of these tubes. The number of tubes is governed by the three-dimensional shape of the free surface, reducing from more than 10 to only two in each trough, as the rotation rate is increased. The tubes vary in diameter from 10-30 μm and can extend hundreds of diameters into the liquid layer before breaking up into a continuous stream of bubbles and/or drops. The tubes are driven through the stagnation line by the strong viscous shear and are stretched in the downstream direction. The entrainment starts when the Capillary number Ca=μωR/σ≃0.4.

Scale dependence of entrainment-mixing mechanisms in cumulus clouds

DOE PAGES

Lu, Chunsong; Liu, Yangang; Niu, Shengjie; ...

2014-12-17

This work empirically examines the dependence of entrainment-mixing mechanisms on the averaging scale in cumulus clouds using in situ aircraft observations during the Routine Atmospheric Radiation Measurement Aerial Facility Clouds with Low Optical Water Depths Optical Radiative Observations (RACORO) field campaign. A new measure of homogeneous mixing degree is defined that can encompass all types of mixing mechanisms. Analysis of the dependence of the homogenous mixing degree on the averaging scale shows that, on average, the homogenous mixing degree decreases with increasing averaging scales, suggesting that apparent mixing mechanisms gradually approach from homogeneous mixing to extreme inhomogeneous mixing with increasingmore » scales. The scale dependence can be well quantified by an exponential function, providing first attempt at developing a scale-dependent parameterization for the entrainment-mixing mechanism. The influences of three factors on the scale dependence are further examined: droplet-free filament properties (size and fraction), microphysical properties (mean volume radius and liquid water content of cloud droplet size distributions adjacent to droplet-free filaments), and relative humidity of entrained dry air. It is found that the decreasing rate of homogeneous mixing degree with increasing averaging scales becomes larger with larger droplet-free filament size and fraction, larger mean volume radius and liquid water content, or higher relative humidity. The results underscore the necessity and possibility of considering averaging scale in representation of entrainment-mixing processes in atmospheric models.« less

Habitat Predicts Levels of Genetic Admixture in Saccharomyces cerevisiae.

PubMed

Tilakaratna, Viranga; Bensasson, Douda

2017-09-07

Genetic admixture can provide material for populations to adapt to local environments, and this process has played a crucial role in the domestication of plants and animals. The model yeast, Saccharomyces cerevisiae , has been domesticated multiple times for the production of wine, sake, beer, and bread, but the high rate of admixture between yeast lineages has so far been treated as a complication for population genomic analysis. Here, we make use of the low recombination rate at centromeres to investigate admixture in yeast using a classic Bayesian approach and a locus-by-locus phylogenetic approach. Using both approaches, we find that S. cerevisiae from stable oak woodland habitats are less likely to show recent genetic admixture compared with those isolated from transient habitats such as fruits, wine, or human infections. When woodland yeast strains do show recent genetic admixture, the degree of admixture is lower than in strains from other habitats. Furthermore, S. cerevisiae populations from oak woodlands are genetically isolated from each other, with only occasional migration between woodlands and local fruit habitats. Application of the phylogenetic approach suggests that there is a previously undetected population in North Africa that is the closest outgroup to the European S. cerevisiae , including the domesticated Wine population. Careful testing for admixture in S. cerevisiae leads to a better understanding of the underlying population structure of the species and will be important for understanding the selective processes underlying domestication in this economically important species. Copyright © 2017 Tilakaratna and Bensasson.

Freezing temperature protection admixture for Portland cement concrete

DOT National Transportation Integrated Search

1996-10-01

A number of experimental admixtures were compared to Pozzutec 20 admixture for their ability to protect fresh concrete from freezing and for increasing the rate of cement hydration at below-freezing temperatures. The commercial accelerator and low-te...

PDF as a coupling mediator between the light-entrainable and temperature-entrainable clocks in Drosophila melanogaster.

PubMed

Tomioka, K; Miyasako, Y; Umezaki, Y

2008-01-01

Drosophila shows bimodal circadian locomotor rhythms with peaks around light-on (morning peak) and before light-off (evening peak). The rhythm synchronizes to light and temperature cycles and the synchronization is achieved by two sets of clocks: one entrains to light cycles and the other to temperature cycles. The light-entrainable clock consists of the clock neurons located in the lateral protocerebrum (LNs) and the temperature-entrainable clock involves those located in the dorsal protocerebrum (DNs) and the cells located in the posterior lateral protocerebrum (LPNs). To understand the interaction between the light-entrainable and the temperature-entrainable clock neurons, locomotor rhythms of the mutant flies lacking PDF or PDF-positive clock neurons were examined. Under the light cycles, they showed altered phase of the evening peak. When exposed to temperature cycles of lower temperature levels, the onset of evening peak showed larger advance in contrast to those of wild-type flies. The termination of the peak also advanced while that of wild-type flies remained almost at the same phase as in the constant temperature. These results support our hypothesis that the PDF-positive light entrainable cells regulate the phase of the temperature entrainable cells to be synchronized to their own phase using PDF as a coupling mediator.

Investigation of Turbulent Entrainment-Mixing Processes With a New Particle-Resolved Direct Numerical Simulation Model

DOE PAGES

Gao, Zheng; Liu, Yangang; Li, Xiaolin; ...

2018-02-19

Here, a new particle-resolved three dimensional direct numerical simulation (DNS) model is developed that combines Lagrangian droplet tracking with the Eulerian field representation of turbulence near the Kolmogorov microscale. Six numerical experiments are performed to investigate the processes of entrainment of clear air and subsequent mixing with cloudy air and their interactions with cloud microphysics. The experiments are designed to represent different combinations of three configurations of initial cloudy area and two turbulence modes (decaying and forced turbulence). Five existing measures of microphysical homogeneous mixing degree are examined, modified, and compared in terms of their ability as a unifying measuremore » to represent the effect of various entrainment-mixing mechanisms on cloud microphysics. Also examined and compared are the conventional Damköhler number and transition scale number as a dynamical measure of different mixing mechanisms. Relationships between the various microphysical measures and dynamical measures are investigated in search for a unified parameterization of entrainment-mixing processes. The results show that even with the same cloud water fraction, the thermodynamic and microphysical properties are different, especially for the decaying cases. Further analysis confirms that despite the detailed differences in cloud properties among the six simulation scenarios, the variety of turbulent entrainment-mixing mechanisms can be reasonably represented with power-law relationships between the microphysical homogeneous mixing degrees and the dynamical measures.« less

Investigation of Turbulent Entrainment-Mixing Processes With a New Particle-Resolved Direct Numerical Simulation Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, Zheng; Liu, Yangang; Li, Xiaolin

Here, a new particle-resolved three dimensional direct numerical simulation (DNS) model is developed that combines Lagrangian droplet tracking with the Eulerian field representation of turbulence near the Kolmogorov microscale. Six numerical experiments are performed to investigate the processes of entrainment of clear air and subsequent mixing with cloudy air and their interactions with cloud microphysics. The experiments are designed to represent different combinations of three configurations of initial cloudy area and two turbulence modes (decaying and forced turbulence). Five existing measures of microphysical homogeneous mixing degree are examined, modified, and compared in terms of their ability as a unifying measuremore » to represent the effect of various entrainment-mixing mechanisms on cloud microphysics. Also examined and compared are the conventional Damköhler number and transition scale number as a dynamical measure of different mixing mechanisms. Relationships between the various microphysical measures and dynamical measures are investigated in search for a unified parameterization of entrainment-mixing processes. The results show that even with the same cloud water fraction, the thermodynamic and microphysical properties are different, especially for the decaying cases. Further analysis confirms that despite the detailed differences in cloud properties among the six simulation scenarios, the variety of turbulent entrainment-mixing mechanisms can be reasonably represented with power-law relationships between the microphysical homogeneous mixing degrees and the dynamical measures.« less

Relationship between Adiposity and Admixture in African American and Hispanic American Women

PubMed Central

Nassir, Rami; Qi, Lihong; Kosoy, Roman; Garcia, Lorena; Allison, Matthew; Ochs– Balcom, Heather M.; Tylavsky, Fran; Manson, JoAnn E.; Shigeta, Russell; Robbins, John; Seldin, Michael F.

2011-01-01

Objective To investigate whether differences in admixture in African American (AFA) and Hispanic American (HA) adult women are associated with adiposity and adipose distribution. Design The proportion of European, sub– Saharan African and Amerindian admixture was estimated for AFA and HA women in the Women's Heath Initiative using 92 ancestry informative markers. Analyses assessed the relationship between admixture and adiposity indices. Subjects 11712 AFA and 5088 HA self– identified post– menopausal women. Results There was a significant positive association between body mass index (BMI) and African admixture when BMI was considered as a continuous variable, and age, education, physical activity, parity, family income and smoking were included covariates (p < 10− 4). A dichotomous model (upper and lower BMI quartiles) showed that African admixture was associated with a high odds ratio [OR = 3.27 (for 100% admixture compared to 0% admixture), 95% confidence interval (CI) 2.08 – 5.15]. For HA there was no association between BMI and admixture. In contrast, when waist to hip ratio (WHR) was used as a measure of adipose distribution, there was no significant association between WHR and admixture in AFA but there was a strong association in HA (p<10− 4; OR Amerindian admixture = 5.93, CI = 3.52 – 9.97). Conclusion These studies show that 1) African admixture is associated with BMI in AFA women; 2) Amerindian admixture is associated with WHR but not BMI in HA women; and 3) it may be important to consider different measurements of adiposity and adipose distribution in different ethnic population groups. PMID:21487399

Relationship between adiposity and admixture in African-American and Hispanic-American women.

PubMed

Nassir, R; Qi, L; Kosoy, R; Garcia, L; Allison, M; Ochs-Balcom, H M; Tylavsky, F; Manson, J E; Shigeta, R; Robbins, J; Seldin, M F

2012-02-01

The objective of this study was to investigate whether differences in admixture in African-American (AFA) and Hispanic-American (HA) adult women are associated with adiposity and adipose distribution. The proportion of European, sub-Saharan African and Amerindian admixture was estimated for AFA and HA women in the Women's Heath Initiative using 92 ancestry informative markers. Analyses assessed the relationship between admixture and adiposity indices. The subjects included 11 712 AFA and 5088 HA self-identified post-menopausal women. There was a significant positive association between body mass index (BMI) and African admixture when BMI was considered as a continuous variable, and age, education, physical activity, parity, family income and smoking were included covariates (P<10(-4)). A dichotomous model (upper and lower BMI quartiles) showed that African admixture was associated with a high odds ratio (OR=3.27 (for 100% admixture compared with 0% admixture), 95% confidence interval 2.08-5.15). For HA, there was no association between BMI and admixture. In contrast, when waist-to-hip ratio (WHR) was used as a measure of adipose distribution, there was no significant association between WHR and admixture in AFA but there was a strong association in HA (P<10(-4); OR Amerindian admixture=5.93, confidence interval=3.52-9.97). These studies show that: (1) African admixture is associated with BMI in AFA women; (2) Amerindian admixture is associated with WHR but not BMI in HA women; and (3) it may be important to consider different measurements of adiposity and adipose distribution in different ethnic population groups.

Ozone Laminae and Their Entrainment Into a Valley Boundary Layer, as Observed From a Mountaintop Monitoring Station, Ozonesondes, and Aircraft Over California's San Joaquin Valley

NASA Astrophysics Data System (ADS)

Faloona, I. C.; Conley, S. A.; Caputi, D.; Trousdell, J.; Chiao, S.; Eiserloh, A. J., Jr.; Clark, J.; Iraci, L. T.; Yates, E. L.; Marrero, J. E.; Ryoo, J. M.; McNamara, M. E.

2016-12-01

The San Joaquin Valley of California is wide ( 75 km) and long ( 400 km), and is situated under strong atmospheric subsidence due, in part, to the proximity of the midlatitude anticyclone of the Pacific High. The capping effect of this subsidence is especially prominent during the warm season when ground level ozone is a serious air quality concern across the region. While relatively clean marine boundary layer air is primarily funneled into the valley below the strong subsidence inversion at significant gaps in the upwind Coast Range mountains, airflow aloft also spills over these barriers and mixes into the valley from above. Because this transmountain flow occurs under the influence of synoptic subsidence it tends to present discrete, laminar sheets of differing air composition above the valley boundary layer. Meanwhile, although the boundary layers tend to remain shallow due to the prevailing subsidence, orographic and anabatic venting of valley boundary layer air around the basin whips up a complex admixture of regional air masses into a "buffer layer" just above the boundary layer (zi) and below the lower free troposphere. We present scalar data of widely varying lifetimes including ozone, methane, NOx, and thermodynamic observations from upwind and within the San Joaquin Valley to better explain this layering and its subsequent erosion into the valley boundary layer via entrainment. Data collected at a mountaintop monitoring station on Chews Ridge in the Coast Range, by coastal ozonesondes, and aircraft are analyzed to document the dynamic layering processes around the complex terrain surrounding the valley. Particular emphasis will be made on observational methods whereby distal ozone can be distinguished from the regional ozone to better understand the influence of exogenous sources on air quality in the valley.

Cold Weather Admixture Systems Demonstration at Fort Wainwright, Alaska

DTIC Science & Technology

2010-08-01

3, and 5, the remaining two test sec- tions (Test Sections 2 and 4) were readied for concrete . The interior formwork was removed, and the rebar was...Washington, DC 20314-1000 ERDC/CRREL TR-10-6 ii Abstract: Cold Weather Admixture Systems (CWAS) is a new approach to cold weather concreting that...incorporates suites of commercially avail- able chemical admixtures in concrete mixes. When used in combination, these admixtures depress the freezing

Admixture in Latin America.

PubMed

Adhikari, Kaustubh; Mendoza-Revilla, Javier; Chacón-Duque, Juan Camilo; Fuentes-Guajardo, Macarena; Ruiz-Linares, Andrés

2016-12-01

Latin Americans arguably represent the largest recently admixed populations in the world. This reflects a history of massive settlement by immigrants (mostly Europeans and Africans) and their variable admixture with Natives, starting in 1492. This process resulted in the population of Latin America showing an extensive genetic and phenotypic diversity. Here we review how genetic analyses are being applied to examine the demographic history of this population, including patterns of mating, population structure and ancestry. The admixture history of Latin America, and the resulting extensive diversity of the region, represents a natural experiment offering an advantageous setting for genetic association studies. We review how recent analyses in Latin Americans are contributing to elucidating the genetic architecture of human complex traits. Copyright © 2016 Elsevier Ltd. All rights reserved.

Viscous-inviscid calculations of jet entrainment effects on the subsonic flow over nozzle afterbodies

NASA Technical Reports Server (NTRS)

Wilmoth, R. G.

1980-01-01

A viscous-inviscid interaction model was developed to account for jet entrainment effects in the prediction of the subsonic flow over nozzle afterbodies. The model is based on the concept of a weakly interacting shear layer in which the local streamline deflections due to entrainment are accounted for by a displacement-thickness type of correction to the inviscid plume boundary. The entire flow field is solved in an iterative manner to account for the effects on the inviscid external flow of the turbulent boundary layer, turbulent mixing and chemical reactions in the shear layer, and the inviscid jet exhaust flow. The components of the computational model are described, and numerical results are presented to illustrate the interactive effects of entrainment on the overall flow structure. The validity of the model is assessed by comparisons with data obtained form flow-field measurements on cold-air jet exhausts. Numerical results and experimental data are also given to show the entrainment effects on nozzle boattail drag under various jet exhaust and free-stream flow conditions.

Physical, thermal and mechanical study of MPC formulated with LG-MgO incorporating Phase Change Materials as admixture

NASA Astrophysics Data System (ADS)

Maldonado-Alameda, A.; Lacasta, A. M.; Giro-Paloma, J.; Chimenos, J. M.; Formosa, J.

2017-10-01

The high environmental impact generated by using of Ordinary Portland Cement (OPC) has lead to the search for alternative materials in the field of civil and building engineering. In addition, there is a tendency to develop cements from industrial by-products, thus reducing pollution and emissions generated by their production. One of the best positioned cements to compete with OPC is Magnesium Phosphate Cement (MPC). The present work studies different dosages of MPC mortars formulated with low-grade MgO by-product (sustainable MPC) incorporating Microencapsulated Phase Change Materials (MPCM) and air entraining additive (AEA) as admixtures (Thermal Sustainable MPC) to improve the thermal behaviour of the material. The aim is developed a new eco-friendly material that leads to reducing energy consumption in buildings. The study is focused on the physical, thermal, and mechanical characterization of TS-MPC mortars to assess their potential use as a thermal prefabricated panel. The results allow to relate the amount of the MPCM and the additive percentage with the thermal and mechanical properties of the TS- MPC. Furthermore, is important to highlight the influence of MPCM not only in the thermal behaviour but also on the increase of the porosity. The experimental results show that the addition of both additives contributes substantially to the improvement of the thermal behaviour of the mortars and converts them on a suitable material to reduce thermal oscillations in buildings.

Tamping Mortars with Stabilizing and Plasticizing Admixtures

NASA Astrophysics Data System (ADS)

Terlyha, Volodymir; Sobol, Khrystyna

2012-06-01

Boreholes cementing operations at the depth of several kilometers requires the best technology as well as the best materials. To produce the materials satisfying all the requirements concerning the tamping works is possible using the technology of dry building mixes (DBM) prepared at the factories by thorough mixing of accurately dosed components. Using of chemical admixtures allows improving some properties of these mixes. In this work the influence of mineral fillers and chemical admixtures on the properties of the fresh mixture and hardened tamping mortar was investigated. It is established that introduction of the admixture with complex action on the basis of stabilizer Walocel 15-01 and plasticizer Melflux 2651 allows obtaining the fresh mixture with high spreadability. At the same time the value of dehydration approaches to zero which favorably effects on stabilization of fresh mixture and not allows the sedimentation processes to take place. By the X-ray analysis, the positive influence of modification admixtures on the hydration processes in the tamping mortars by activating them was identified. In the result of this, the formation of hydrate phases is accelerated; these phases tightly mud the pore area of tamping stone increasing by this its strength.

Partial entrainment of gravel bars during floods

USGS Publications Warehouse

Konrad, Christopher P.; Booth, Derek B.; Burges, Stephen J.; Montgomery, David R.

2002-01-01

Spatial patterns of bed material entrainment by floods were documented at seven gravel bars using arrays of metal washers (bed tags) placed in the streambed. The observed patterns were used to test a general stochastic model that bed material entrainment is a spatially independent, random process where the probability of entrainment is uniform over a gravel bar and a function of the peak dimensionless shear stress τ0* of the flood. The fraction of tags missing from a gravel bar during a flood, or partial entrainment, had an approximately normal distribution with respect to τ0* with a mean value (50% of the tags entrained) of 0.085 and standard deviation of 0.022 (root‐mean‐square error of 0.09). Variation in partial entrainment for a given τ0* demonstrated the effects of flow conditioning on bed strength, with lower values of partial entrainment after intermediate magnitude floods (0.065 < τ0*< 0.08) than after higher magnitude floods. Although the probability of bed material entrainment was approximately uniform over a gravel bar during individual floods and independent from flood to flood, regions of preferential stability and instability emerged at some bars over the course of a wet season. Deviations from spatially uniform and independent bed material entrainment were most pronounced for reaches with varied flow and in consecutive floods with small to intermediate magnitudes.

Visual cortex entrains to sign language.

PubMed

Brookshire, Geoffrey; Lu, Jenny; Nusbaum, Howard C; Goldin-Meadow, Susan; Casasanto, Daniel

2017-06-13

Despite immense variability across languages, people can learn to understand any human language, spoken or signed. What neural mechanisms allow people to comprehend language across sensory modalities? When people listen to speech, electrophysiological oscillations in auditory cortex entrain to slow ([Formula: see text]8 Hz) fluctuations in the acoustic envelope. Entrainment to the speech envelope may reflect mechanisms specialized for auditory perception. Alternatively, flexible entrainment may be a general-purpose cortical mechanism that optimizes sensitivity to rhythmic information regardless of modality. Here, we test these proposals by examining cortical coherence to visual information in sign language. First, we develop a metric to quantify visual change over time. We find quasiperiodic fluctuations in sign language, characterized by lower frequencies than fluctuations in speech. Next, we test for entrainment of neural oscillations to visual change in sign language, using electroencephalography (EEG) in fluent speakers of American Sign Language (ASL) as they watch videos in ASL. We find significant cortical entrainment to visual oscillations in sign language <5 Hz, peaking at [Formula: see text]1 Hz. Coherence to sign is strongest over occipital and parietal cortex, in contrast to speech, where coherence is strongest over the auditory cortex. Nonsigners also show coherence to sign language, but entrainment at frontal sites is reduced relative to fluent signers. These results demonstrate that flexible cortical entrainment to language does not depend on neural processes that are specific to auditory speech perception. Low-frequency oscillatory entrainment may reflect a general cortical mechanism that maximizes sensitivity to informational peaks in time-varying signals.

Modeling variable density turbulence in the wake of an air-entraining transom stern

NASA Astrophysics Data System (ADS)

Hendrickson, Kelli; Yue, Dick

2015-11-01

This work presents a priori testing of closure models for the incompressible highly-variable density turbulent (IHVDT) flows in the near wake region of a transom stern. This three-dimensional flow is comprised of convergent corner waves that originate from the body and collide on the ship center plane forming the ``rooster tail'' that then widens to form the divergent wave train. These violent free-surface flows and breaking waves are characterized by significant turbulent mass flux (TMF) at Atwood number At = (ρ2 -ρ1) / (ρ2 +ρ1) ~ 1 for which there is little guidance in turbulence closure modeling for the momentum and scalar transport along the wake. To whit, this work utilizes high-resolution simulations of the near wake of a canonical three-dimensional transom stern using conservative Volume-of-Fluid (cVOF), implicit Large Eddy Simulation (iLES), and Boundary Data Immersion Method (BDIM) to capture the turbulence and large scale air entrainment. Analysis of the simulation results across and along the wake for the TMF budget and turbulent anisotropy provide the physical basis of the development of multiphase turbulence closure models. Performance of isotropic and anisotropic turbulent mass flux closure models will be presented. Sponsored by the Office of Naval Research.

Supercavitating flow around high-speed underwater projectile near free surface induced by air entrainment

NASA Astrophysics Data System (ADS)

Xu, Chang; Huang, Jian; Wang, Yiwei; Wu, Xiaocui; Huang, Chenguang; Wu, Xianqian

2018-03-01

Cavitating flow near free surface is a complicated issue and may provide new inspiration on high-speed surface cruising. This study observes stable supercavitating flow as a new phenomenon in a launch experiment of axisymmetric projectile when the upper side of the projectile coincides with the free surface. A numerical approach is established using large eddy-simulation and volume-of-fluid methods, and good agreements are achieved between numerical and experimental results. Supercavity formation mechanism is revealed by analyzing the experiment photographs and the iso-surface of 90% water volume fraction in numerical results. The entrainment of a large amount of air into the cavity can cause the pressure inside the cavity to similarly increase with the pressure outside the cavity, which makes the actual cavitation number close to zero and is similar to supercavitation. Cases with various headforms of the projectile and cavitation numbers on the cavitating flow, as well as the drag reduction effects are further examined. Results indicate that the present strategy near the free surface could possibly be a new effective approach for high-speed cruising after vigorous design optimization in the future.

Archaic admixture in human history.

PubMed

Wall, Jeffrey D; Yoshihara Caldeira Brandt, Debora

2016-12-01

Modern humans evolved in Southern or Eastern Africa, and spread from there across the rest of the world. As they expanded across Africa and Eurasia, they encountered other hominin groups. The extent to which modern and 'archaic' human groups interbred is an area of active research, and while we know that modern humans interbred with Neanderthals and Denisovans, there is not yet agreement on how many admixture events there were or on how much Neanderthal or Denisovan DNA can be found in contemporary genomes. Here we review what is known about archaic admixture in human history, with a focus on what has been discovered in the past 2 years. Copyright © 2016 Elsevier Ltd. All rights reserved.

Antifreeze Admixtures for Concrete

DOT National Transportation Integrated Search

1997-10-01

The goal of this project was to develop a chemical admixture that would reduce the need for wintertime thermal protection of freshly placed concrete. Chemicals were investigated for their ability to promote strength gain in concrete cured below 0 deg...

Admixture, evolution, and variation in reproductive isolation in the Boechera puberula clade.

PubMed

Schilling, Martin P; Gompert, Zachariah; Li, Fay-Wei; Windham, Michael D; Wolf, Paul G

2018-04-25

Hybridization is very common in plants, and the incorporation of new alleles into existing lineages (i.e. admixture) can blur species boundaries. However, admixture also has the potential to increase standing genetic variation. With new sequencing methods, we can now study admixture and reproductive isolation at a much finer scale than in the past. The genus Boechera is an extraordinary example of admixture, with over 400 hybrid derivates of varying ploidy levels. Yet, few studies have assessed admixture in this genus on a genomic scale. In this study, we used Genotyping-by-Sequencing (GBS) to clarify the evolution of the Boechera puberula clade, whose six members are scattered across the western United States. We further assessed patterns of admixture and reproductive isolation within the group, including two additional species (B. stricta and B. retrofracta) that are widespread across North America. Based on 14,815 common genetic variants, we found evidence for some cases of hybridization. We find evidence of both recent and more ancient admixture, and that levels of admixture vary across species. We present evidence for a monophyletic origin of the B. puberula group, and a split of B. puberula into two subspecies. Further, when inferring reproductive isolation on the basis of presence and absence of admixture, we found that the accumulation of reproductive isolation between species does not seem to occur linearly with time since divergence in this system. We discuss our results in the context of sexuality and asexuality in Boechera.

A comparative efficacy study of photic driving brainwave entrainment technology with a novel form of more direct entrainment

NASA Astrophysics Data System (ADS)

Knowles, Richard Thomas

This exploratory study compared the efficacy of a novel brainwave electromagnetic (EM) entrainment technology against a more conventional technology utilizing the photic-driving technique. Both experimental conditions were also compared with a 7-minute control session that took place immediately before each stimulation session. The Schumann Resonance (SR) frequency was selected as the delivery signal and was chosen because of previous findings suggesting that entrainment to this frequency can often produce transpersonal if not paranormal, experiences in the entrainee, which sometimes resemble remote viewing or out-of-body experiences. A pilot study determined which of two novel entrainment modalities (a copper coil or a 16-solenoid headset) worked most effectively for use with the rest of the study. In the main study, an artificial SR signal at 7.8Hz was delivered during the photic-driving sessions, but a recording of the real-time SR was used to deliver the entrainment signal during sessions devoted to the electromagnetic entrainment modality. Sixteen participants were recruited from the local area, and EEG recordings were acquired via a 32-channel Deymed electroencephalography system. Comparative analyses were performed between the control and experimental portions of each session to assess for efficacy of the novel entrainment modality used, and, in the main study, between the electromagnetic and photic-driving sessions, to assess for differential entrainment efficacy between these groups. A follow-up study was additionally performed primarily to determine whether responders could replicate their entrainment effect from the main study. Results showed that EM entrainment appeared to be possible but is not nearly as robust or reliable as photic driving. Additionally, no profound transpersonal or paranormal experiences were elicited during the course of the study, and, when asked, participants were not able to determine with any degree of success, when the

Heterogeneity in Genetic Admixture across Different Regions of Argentina

PubMed Central

Avena, Sergio; Via, Marc; Ziv, Elad; Pérez-Stable, Eliseo J.; Gignoux, Christopher R.; Dejean, Cristina; Huntsman, Scott; Torres-Mejía, Gabriela; Dutil, Julie; Matta, Jaime L.; Beckman, Kenneth; Burchard, Esteban González; Parolin, María Laura; Goicoechea, Alicia; Acreche, Noemí; Boquet, Mariel; Ríos Part, María Del Carmen; Fernández, Vanesa; Rey, Jorge; Stern, Mariana C.; Carnese, Raúl F.; Fejerman, Laura

2012-01-01

The population of Argentina is the result of the intermixing between several groups, including Indigenous American, European and African populations. Despite the commonly held idea that the population of Argentina is of mostly European origin, multiple studies have shown that this process of admixture had an impact in the entire Argentine population. In the present study we characterized the distribution of Indigenous American, European and African ancestry among individuals from different regions of Argentina and evaluated the level of discrepancy between self-reported grandparental origin and genetic ancestry estimates. A set of 99 autosomal ancestry informative markers (AIMs) was genotyped in a sample of 441 Argentine individuals to estimate genetic ancestry. We used non-parametric tests to evaluate statistical significance. The average ancestry for the Argentine sample overall was 65% European (95%CI: 63–68%), 31% Indigenous American (28–33%) and 4% African (3–4%). We observed statistically significant differences in European ancestry across Argentine regions [Buenos Aires province (BA) 76%, 95%CI: 73–79%; Northeast (NEA) 54%, 95%CI: 49–58%; Northwest (NWA) 33%, 95%CI: 21–41%; South 54%, 95%CI: 49–59%; p<0.0001] as well as between the capital and immediate suburbs of Buenos Aires city compared to more distant suburbs [80% (95%CI: 75–86%) versus 68% (95%CI: 58–77%), p = 0.01]. European ancestry among individuals that declared all grandparents born in Europe was 91% (95%CI: 88–94%) compared to 54% (95%CI: 51–57%) among those with no European grandparents (p<0.001). Our results demonstrate the range of variation in genetic ancestry among Argentine individuals from different regions in the country, highlighting the importance of taking this variation into account in genetic association and admixture mapping studies in this population. PMID:22506044

Accuracy of entrainment coefficients in one-dimensional volcanic plume models

NASA Astrophysics Data System (ADS)

McNeal, J. S.; Freedland, G.; Cal, R. B.; Mastin, L. G.; Solovitz, S.

2017-12-01

During and after volcanic eruptions, ash clouds can present a danger to human activities, notably to air travel. Ash dispersal models can forecast the location and downwind path of the ash cloud, which are critical for mitigating potential threats. The accuracy of the ash dispersal model depends on the reliability of input parameters, one of which is the mass eruption rate (MER). Uncertainties in MER translate to uncertainties in forecasts of ash-cloud concentration. One-dimensional plume models can quickly estimate the MER from plume height, relying on empirical entrainment coefficients, α and β, which describe air inflow perpendicular and parallel to the centerline of the plume, respectively. While much work has been done to quantify α for strong plumes (0.06-0.09 in most cases), consensus has not been reached for α and β in moderate to weak plumes (i.e. plumes bent over by the wind). We conducted high precision jet entrainment measurements in a wind tunnel using particle image velocimetry (PIV). Observed centerline trajectories were compared to modeled ones using the one-dimensional plume model Plumeria. Test conditions produced Reynolds numbers (Re) on the order of 103 to 105 and jet-to-cross flow velocity ratios (Vr) from 6 to 34. Over this range, α and β were adjusted to match the modeled trajectories with measured ones. Additionally, we compared historical observations of plume height and MER during volcanic eruptions against Plumeria predictions. Uncertainties in MER were considered with additional model simulations to quantify their impact on the optimal entrainment coefficients. Our comparisons reveal a clear linear α-β relationship, where multiple α and β values could be found that produced accurate plume height predictions. For example, similar accuracy was found using both (α,β) = (0.07,0.35) and (α,β) = (0.04,0.95) for the test case based on the 2002 eruption of Reventador volcano in Ecuador. However, in some cases that we studied, the

Optimizing the Entrainment Geometry of a Dry Powder Inhaler: Methodology and Preliminary Results.

PubMed

Kopsch, Thomas; Murnane, Darragh; Symons, Digby

2016-11-01

For passive dry powder inhalers (DPIs) entrainment and emission of the aerosolized drug dose depends strongly on device geometry and the patient's inhalation manoeuvre. We propose a computational method for optimizing the entrainment part of a DPI. The approach assumes that the pulmonary delivery location of aerosol can be determined by the timing of dose emission into the tidal airstream. An optimization algorithm was used to iteratively perform computational fluid dynamic (CFD) simulations of the drug emission of a DPI. The algorithm seeks to improve performance by changing the device geometry. Objectives were to achieve drug emission that was: A) independent of inhalation manoeuvre; B) similar to a target profile. The simulations used complete inhalation flow-rate profiles generated dependent on the device resistance. The CFD solver was OpenFOAM with drug/air flow simulated by the Eulerian-Eulerian method. To demonstrate the method, a 2D geometry was optimized for inhalation independence (comparing two breath profiles) and an early-bolus delivery. Entrainment was both shear-driven and gas-assisted. Optimization for a delay in the bolus delivery was not possible with the chosen geometry. Computational optimization of a DPI geometry for most similar drug delivery has been accomplished for an example entrainment geometry.

Exploring Entrainment Patterns of Human Emotion in Social Media.

PubMed

He, Saike; Zheng, Xiaolong; Zeng, Daniel; Luo, Chuan; Zhang, Zhu

2016-01-01

Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace.

Entrainment and capture by swimming cells

NASA Astrophysics Data System (ADS)

Mathijssen, Arnold; Jeanneret, Raphael; Polin, Marco

Floating particles that collide with a micro-swimmer can be entrained for long distances, which provides an opportunity for numerous biological processes to occur with prolonged contact times, including the capture of nutrients and virus infection. Here, we show that the entrainment mechanism is universal for different organisms, C. reinhardtii, T. subcordiforms and O. marina, regardless of diversity in propulsion mechanism and hydrodynamic signature. The flows generated near these microbes are simulated throughout the swimming stroke, and the resulting entrainment lengths compared with our experiments. We find a series of compromises: Flagella can reduce contact times with less tidy interactions, but the entrainment frequency increases as flagella pull particles towards the body. The contact time grows quadratically with swimmer size, but decreases with swimming speed or encounter rate. With the inclusion of Brownian noise, there is an optimal particle size for each swimmer and, conversely, there is an optimal organism for each floating object. We analyse the features of the entrainment mechanism with a Taylor-dispersion theory, and demonstrate how the presented trade-offs may be tuned quantitatively in various biological situations.

Ground-Based Remote Retrievals of Cumulus Entrainment Rates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wagner, Timothy J.; Turner, David D.; Berg, Larry K.

2013-07-26

While fractional entrainment rates for cumulus clouds have typically been derived from airborne observations, this limits the size and scope of available data sets. To increase the number of continental cumulus entrainment rate observations available for study, an algorithm for retrieving them from ground-based remote sensing observations has been developed. This algorithm, called the Entrainment Rate In Cumulus Algorithm (ERICA), uses the suite of instruments at the Southern Great Plains (SGP) site of the United States Department of Energy's Atmospheric Radiation Measurement (ARM) Climate Research Facility as inputs into a Gauss-Newton optimal estimation scheme, in which an assumed guess ofmore » the entrainment rate is iteratively adjusted through intercomparison of modeled liquid water path and cloud droplet effective radius to their observed counterparts. The forward model in this algorithm is the Explicit Mixing Parcel Model (EMPM), a cloud parcel model that treats entrainment as a series of discrete entrainment events. A quantified value for measurement uncertainty is also returned as part of the retrieval. Sensitivity testing and information content analysis demonstrate the robust nature of this method for retrieving accurate observations of the entrainment rate without the drawbacks of airborne sampling. Results from a test of ERICA on three months of shallow cumulus cloud events show significant variability of the entrainment rate of clouds in a single day and from one day to the next. The mean value of 1.06 km-¹ for the entrainment rate in this dataset corresponds well with prior observations and simulations of the entrainment rate in cumulus clouds.« less

Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation

PubMed Central

Sanderson, Jean; Sudoyo, Herawati; Karafet, Tatiana M.; Hammer, Michael F.; Cox, Murray P.

2015-01-01

Admixture between long-separated populations is a defining feature of the genomes of many species. The mosaic block structure of admixed genomes can provide information about past contact events, including the time and extent of admixture. Here, we describe an improved wavelet-based technique that better characterizes ancestry block structure from observed genomic patterns. principal components analysis is first applied to genomic data to identify the primary population structure, followed by wavelet decomposition to develop a new characterization of local ancestry information along the chromosomes. For testing purposes, this method is applied to human genome-wide genotype data from Indonesia, as well as virtual genetic data generated using genome-scale sequential coalescent simulations under a wide range of admixture scenarios. Time of admixture is inferred using an approximate Bayesian computation framework, providing robust estimates of both admixture times and their associated levels of uncertainty. Crucially, we demonstrate that this revised wavelet approach, which we have released as the R package adwave, provides improved statistical power over existing wavelet-based techniques and can be used to address a broad range of admixture questions. PMID:25852078

Native American Admixture in the Quebec Founder Population

PubMed Central

Moreau, Claudia; Lefebvre, Jean-François; Jomphe, Michèle; Bhérer, Claude; Ruiz-Linares, Andres; Vézina, Hélène; Roy-Gagnon, Marie-Hélène; Labuda, Damian

2013-01-01

For years, studies of founder populations and genetic isolates represented the mainstream of genetic mapping in the effort to target genetic defects causing Mendelian disorders. The genetic homogeneity of such populations as well as relatively homogeneous environmental exposures were also seen as primary advantages in studies of genetic susceptibility loci that underlie complex diseases. European colonization of the St-Lawrence Valley by a small number of settlers, mainly from France, resulted in a founder effect reflected by the appearance of a number of population-specific disease-causing mutations in Quebec. The purported genetic homogeneity of this population was recently challenged by genealogical and genetic analyses. We studied one of the contributing factors to genetic heterogeneity, early Native American admixture that was never investigated in this population before. Consistent admixture estimates, in the order of one per cent, were obtained from genome-wide autosomal data using the ADMIXTURE and HAPMIX software, as well as with the fastIBD software evaluating the degree of the identity-by-descent between Quebec individuals and Native American populations. These genomic results correlated well with the genealogical estimates. Correlations are imperfect most likely because of incomplete records of Native founders’ origin in genealogical data. Although the overall degree of admixture is modest, it contributed to the enrichment of the population diversity and to its demographic stratification. Because admixture greatly varies among regions of Quebec and among individuals, it could have significantly affected the homogeneity of the population, which is of importance in mapping studies, especially when rare genetic susceptibility variants are in play. PMID:23776491

Exploring Entrainment Patterns of Human Emotion in Social Media

PubMed Central

Luo, Chuan; Zhang, Zhu

2016-01-01

Emotion entrainment, which is generally defined as the synchronous convergence of human emotions, performs many important social functions. However, what the specific mechanisms of emotion entrainment are beyond in-person interactions, and how human emotions evolve under different entrainment patterns in large-scale social communities, are still unknown. In this paper, we aim to examine the massive emotion entrainment patterns and understand the underlying mechanisms in the context of social media. As modeling emotion dynamics on a large scale is often challenging, we elaborate a pragmatic framework to characterize and quantify the entrainment phenomenon. By applying this framework on the datasets from two large-scale social media platforms, we find that the emotions of online users entrain through social networks. We further uncover that online users often form their relations via dual entrainment, while maintain it through single entrainment. Remarkably, the emotions of online users are more convergent in nonreciprocal entrainment. Building on these findings, we develop an entrainment augmented model for emotion prediction. Experimental results suggest that entrainment patterns inform emotion proximity in dyads, and encoding their associations promotes emotion prediction. This work can further help us to understand the underlying dynamic process of large-scale online interactions and make more reasonable decisions regarding emergency situations, epidemic diseases, and political campaigns in cyberspace. PMID:26953692

Prediction of nearfield jet entrainment by an interactive mixing/afterburning model

NASA Technical Reports Server (NTRS)

Dash, S. M.; Pergament, H. S.; Wilmoth, R. G.

1978-01-01

The development of a computational model (BOAT) for calculating nearfield jet entrainment, and its application to the prediction of nozzle boattail pressures, is discussed. BOAT accounts for the detailed turbulence and thermochemical processes occurring in the nearfield shear layers of jet engine (and rocket) exhaust plumes while interfacing with the inviscid exhaust and external flowfield regions in an overlaid, interactive manner. The ability of the model to analyze simple free shear flows is assessed by detailed comparisons with fundamental laboratory data. The overlaid methodology and the entrainment correction employed to yield the effective plume boundary conditions are assessed via application of BOAT in conjunction with the codes comprising the NASA/LRC patched viscous/inviscid model for determining nozzle boattail drag for subsonic/transonic external flows. Comparisons between the predictions and data on underexpanded laboratory cold air jets are presented.

Disordered speech disrupts conversational entrainment: a study of acoustic-prosodic entrainment and communicative success in populations with communication challenges

PubMed Central

Borrie, Stephanie A.; Lubold, Nichola; Pon-Barry, Heather

2015-01-01

Conversational entrainment, a pervasive communication phenomenon in which dialogue partners adapt their behaviors to align more closely with one another, is considered essential for successful spoken interaction. While well-established in other disciplines, this phenomenon has received limited attention in the field of speech pathology and the study of communication breakdowns in clinical populations. The current study examined acoustic-prosodic entrainment, as well as a measure of communicative success, in three distinctly different dialogue groups: (i) healthy native vs. healthy native speakers (Control), (ii) healthy native vs. foreign-accented speakers (Accented), and (iii) healthy native vs. dysarthric speakers (Disordered). Dialogue group comparisons revealed significant differences in how the groups entrain on particular acoustic–prosodic features, including pitch, intensity, and jitter. Most notably, the Disordered dialogues were characterized by significantly less acoustic-prosodic entrainment than the Control dialogues. Further, a positive relationship between entrainment indices and communicative success was identified. These results suggest that the study of conversational entrainment in speech pathology will have essential implications for both scientific theory and clinical application in this domain. PMID:26321996

Field Performance Of Concrete Admixtures

DOT National Transportation Integrated Search

1998-06-30

This project investigated compatibility problems involving two concrete admixtures from W.R. Grace Products and Dacotah portland cement. The problems experienced by the South Dakota Department of Transportation (SDDOT) were described as rapid slump l...

Inclined gravity currents filling basins: The influence of Reynolds number on entrainment into gravity currents

NASA Astrophysics Data System (ADS)

Hogg, Charlie A. R.; Dalziel, Stuart B.; Huppert, Herbert E.; Imberger, Jörg

2015-09-01

In many important natural and industrial systems, gravity currents of dense fluid feed basins. Examples include lakes fed by dense rivers and auditoria supplied with cooled air by ventilation systems. As we will show, the entrainment into such buoyancy driven currents can be influenced by viscous forces. Little work, however, has examined this viscous influence and how entrainment varies with the Reynolds number, Re. Using the idea of an entrainment coefficient, E, we derive a mathematical expression for the rise of the front at the top of the dense fluid ponding in a basin, where the horizontal cross-sectional area of the basin varies linearly with depth. We compare this expression to experiments on gravity currents with source Reynolds numbers, Res, covering the broad range 100 < Res < 1500. The form of the observed frontal rises was well approximated by our theory. By fitting the observed frontal rises to the theoretical form with E as the free parameter, we find a linear trend for E(Res) over the range 350 < Res < 1100, which is in the transition to turbulent flow. In the experiments, the entrainment coefficient, E, varied from 4 × 10-5 to 7 × 10-2. These observations show that viscous damping can be a dominant influence on gravity current entrainment in the laboratory and in geophysical flows in this transitional regime.

Developing new low-temperature admixtures for concrete : a field evaluation

DOT National Transportation Integrated Search

1997-04-01

Two new admixtures, capable of preventing water from freezing, as well as increasing the hydration rate of cement at below-freezing temperatures, were field tested at Sault Ste. Marie, Michigan. Concrete made with the admixtures was placed on a froze...

The Complex Admixture History and Recent Southern Origins of Siberian Populations

PubMed Central

Pugach, Irina; Matveev, Rostislav; Spitsyn, Viktor; Makarov, Sergey; Novgorodov, Innokentiy; Osakovsky, Vladimir; Stoneking, Mark; Pakendorf, Brigitte

2016-01-01

Although Siberia was inhabited by modern humans at an early stage, there is still debate over whether it remained habitable during the extreme cold of the Last Glacial Maximum or whether it was subsequently repopulated by peoples with recent shared ancestry. Previous studies of the genetic history of Siberian populations were hampered by the extensive admixture that appears to have taken place among these populations, because commonly used methods assume a tree-like population history and at most single admixture events. Here we analyze geogenetic maps and use other approaches to distinguish the effects of shared ancestry from prehistoric migrations and contact, and develop a new method based on the covariance of ancestry components, to investigate the potentially complex admixture history. We furthermore adapt a previously devised method of admixture dating for use with multiple events of gene flow, and apply these methods to whole-genome genotype data from over 500 individuals belonging to 20 different Siberian ethnolinguistic groups. The results of these analyses indicate that there have been multiple layers of admixture detectable in most of the Siberian populations, with considerable differences in the admixture histories of individual populations. Furthermore, most of the populations of Siberia included here, even those settled far to the north, appear to have a southern origin, with the northward expansions of different populations possibly being driven partly by the advent of pastoralism, especially reindeer domestication. These newly developed methods to analyze multiple admixture events should aid in the investigation of similarly complex population histories elsewhere. PMID:26993256

Rhythmic entrainment as a musical affect induction mechanism.

PubMed

J Trost, W; Labbé, C; Grandjean, D

2017-02-01

One especially important feature of metrical music is that it contains periodicities that listeners' bodily rhythms can adapt to. Recent psychological frameworks have introduced the notion of rhythmic entrainment, among other mechanisms, as an emotion induction principle. In this review paper, we discuss rhythmic entrainment as an affect induction mechanism by differentiating four levels of entrainment in humans-perceptual, autonomic physiological, motor, and social-all of which could contribute to a subjective feeling component. We review the theoretical and empirical literature on rhythmic entrainment to music that supports the existence of these different levels of entrainment by describing the phenomena and characterizing the associated underlying brain processes. The goal of this review is to present the theoretical implications and empirical findings about rhythmic entrainment as an important principle at the basis of affect induction via music, since it rests upon the temporal dimension of music, which is a specificity of music as an affective stimulus. Copyright © 2017 Elsevier Ltd. All rights reserved.

Patterns of admixture and population structure in native populations of Northwest North America.

PubMed

Verdu, Paul; Pemberton, Trevor J; Laurent, Romain; Kemp, Brian M; Gonzalez-Oliver, Angelica; Gorodezky, Clara; Hughes, Cris E; Shattuck, Milena R; Petzelt, Barbara; Mitchell, Joycelynn; Harry, Harold; William, Theresa; Worl, Rosita; Cybulski, Jerome S; Rosenberg, Noah A; Malhi, Ripan S

2014-08-01

The initial contact of European populations with indigenous populations of the Americas produced diverse admixture processes across North, Central, and South America. Recent studies have examined the genetic structure of indigenous populations of Latin America and the Caribbean and their admixed descendants, reporting on the genomic impact of the history of admixture with colonizing populations of European and African ancestry. However, relatively little genomic research has been conducted on admixture in indigenous North American populations. In this study, we analyze genomic data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples of the Pacific Northwest in British Columbia and Southeast Alaska, populations with a well-documented history of contact with European and Asian traders, fishermen, and contract laborers. We find that the indigenous populations of the Pacific Northwest have higher gene diversity than Latin American indigenous populations. Among the Pacific Northwest populations, interior groups provide more evidence for East Asian admixture, whereas coastal groups have higher levels of European admixture. In contrast with many Latin American indigenous populations, the variance of admixture is high in each of the Pacific Northwest indigenous populations, as expected for recent and ongoing admixture processes. The results reveal some similarities but notable differences between admixture patterns in the Pacific Northwest and those in Latin America, contributing to a more detailed understanding of the genomic consequences of European colonization events throughout the Americas.

Patterns of Admixture and Population Structure in Native Populations of Northwest North America

PubMed Central

Verdu, Paul; Pemberton, Trevor J.; Laurent, Romain; Kemp, Brian M.; Gonzalez-Oliver, Angelica; Gorodezky, Clara; Hughes, Cris E.; Shattuck, Milena R.; Petzelt, Barbara; Mitchell, Joycelynn; Harry, Harold; William, Theresa; Worl, Rosita; Cybulski, Jerome S.; Rosenberg, Noah A.; Malhi, Ripan S.

2014-01-01

The initial contact of European populations with indigenous populations of the Americas produced diverse admixture processes across North, Central, and South America. Recent studies have examined the genetic structure of indigenous populations of Latin America and the Caribbean and their admixed descendants, reporting on the genomic impact of the history of admixture with colonizing populations of European and African ancestry. However, relatively little genomic research has been conducted on admixture in indigenous North American populations. In this study, we analyze genomic data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples of the Pacific Northwest in British Columbia and Southeast Alaska, populations with a well-documented history of contact with European and Asian traders, fishermen, and contract laborers. We find that the indigenous populations of the Pacific Northwest have higher gene diversity than Latin American indigenous populations. Among the Pacific Northwest populations, interior groups provide more evidence for East Asian admixture, whereas coastal groups have higher levels of European admixture. In contrast with many Latin American indigenous populations, the variance of admixture is high in each of the Pacific Northwest indigenous populations, as expected for recent and ongoing admixture processes. The results reveal some similarities but notable differences between admixture patterns in the Pacific Northwest and those in Latin America, contributing to a more detailed understanding of the genomic consequences of European colonization events throughout the Americas. PMID:25122539

Alignment strategies for the entrainment of music and movement rhythms.

PubMed

Moens, Bart; Leman, Marc

2015-03-01

Theories of entrainment assume that spontaneous entrainment emerges from dynamic laws that operate via mediators on interactions, whereby entrainment is facilitated if certain conditions are fulfilled. In this study, we show that mediators can be built that affect the entrainment of human locomotion to music. More specifically, we built D-Jogger, a music player that functions as a mediator between music and locomotion rhythms. The D-Jogger makes it possible to manipulate the timing differences between salient moments of the rhythms (beats and footfalls) through the manipulation of the musical period and phase, which affect the condition in which entrainment functions. We conducted several experiments to explore different strategies for manipulating the entrainment of locomotion and music. The results of these experiments showed that spontaneous entrainment can be manipulated, thereby suggesting different strategies on how to embark. The findings furthermore suggest a distinction among different modalities of entrainment: finding the beat (the most difficult part of entrainment), keeping the beat (easier, as a temporal scheme has been established), and being in phase (no entrainment is needed because the music is always adapted to the human rhythm). This study points to a new avenue of research on entrainment and opens new perspectives for the neuroscience of music. © 2014 New York Academy of Sciences.

Effect of Waterproofing Admixtures on the Flexural Strength and Corrosion Resistance of Concrete

NASA Astrophysics Data System (ADS)

Geetha, A.; Perumal, P.

2012-02-01

This paper deals about the flexural strength and corrosion behaviour of concrete using waterproofing admixtures. The effect of waterproofing admixtures on the corrosion behaviour of RCC specimen has been studied by conducting accelerated corrosion test. To identify the effect of corrosion in pull out strength, corrosion process was induced by means of accelerated corrosion procedure. To accelerate the reinforcement corrosion, direct electric current was impressed on the rebar embedded in the specimen using a DC power supply system that has a facility to adjust voltage. The addition of waterproofing admixtures also shows the improvement in the flexural strength of concrete has been studied by conducting flexural strength tests on the concrete prism specimen of size 100 × 100 × 500 mm with and without admixtures for various dosages and various curing periods of 7 and 28 days. The results showed that the presence of waterproofing admixtures always improves the corrosion resistance and thus increases the strength of concrete due to the hydrophobic action of waterproofing admixtures.

Stability of total nutrient admixtures in reference to ambient temperatures.

PubMed

Lee, Myung Duk; Yoon, Jeung-Ei; Kim, Sang-In; Kim, In-Chul

2003-10-01

To evaluate the stability of emulsions under different temperatures simulating clinical conditions of storage and exposure during infusion, five total nutrient admixture formulas in this institution were analyzed: adult, patients with hepatic failure, infants, stressed patients, and patients with renal failure. Each mixture was allocated in a sterile 100-mL glass bottle, which was prefilled and refilled with nitrogen gas. Bottles were stored at 4 degrees C for 0 d, 3 d, and 7 d and then exposed to three different temperatures: usual room temperature (18 degrees C to 25 degrees C), high (>28 degrees C) in a water bath, or storage (4 degrees C) for 24 and 48 h. The gross inspection of the emulsions and parallel measurements of pH, particle sizes, divalent ions, peroxide levels, and microbial cultures were performed. Every lot was stable near 18 degrees C, but 8 of 10 lots stored for 7 d (25 degrees C and >28 degrees C) and 15 of 20 lots stored for 3 and 7 d (25 degrees C and >28 degrees C) showed coalescence. The overall coalescence incidences by storage, exposure, and heat were statistically significant (P < 0.005). For the safety of total nutrient admixtures, special attention is required to keep the ambient temperature below 28 degrees C and completely exclude air from the container.

Estimating Bulk Entrainment With Unaggregated and Aggregated Convection

NASA Astrophysics Data System (ADS)

Becker, Tobias; Bretherton, Christopher S.; Hohenegger, Cathy; Stevens, Bjorn

2018-01-01

To investigate how entrainment is influenced by convective organization, we use the ICON (ICOsahedral Nonhydrostatic) model in a radiative-convective equilibrium framework, with a 1 km spatial grid mesh covering a 600 by 520 km2 domain. We analyze two simulations, with unaggregated and aggregated convection, and find that, in the lower free troposphere, the bulk entrainment rate increases when convection aggregates. The increase of entrainment rate with aggregation is caused by a strong increase of turbulence in the close environment of updrafts, masking other effects like the increase of updraft size and of static stability with aggregation. Even though entrainment rate increases with aggregation, updraft buoyancy reduction through entrainment decreases because aggregated updrafts are protected by a moist shell. Parameterizations that wish to represent mesoscale convective organization would need to model this moist shell.

Entrainment to an auditory signal: Is attention involved?

PubMed

Kunert, Richard; Jongman, Suzanne R

2017-01-01

Many natural auditory signals, including music and language, change periodically. The effect of such auditory rhythms on the brain is unclear however. One widely held view, dynamic attending theory, proposes that the attentional system entrains to the rhythm and increases attention at moments of rhythmic salience. In support, 2 experiments reported here show reduced response times to visual letter strings shown at auditory rhythm peaks, compared with rhythm troughs. However, we argue that an account invoking the entrainment of general attention should further predict rhythm entrainment to also influence memory for visual stimuli. In 2 pseudoword memory experiments we find evidence against this prediction. Whether a pseudoword is shown during an auditory rhythm peak or not is irrelevant for its later recognition memory in silence. Other attention manipulations, dividing attention and focusing attention, did result in a memory effect. This raises doubts about the suggested attentional nature of rhythm entrainment. We interpret our findings as support for auditory rhythm perception being based on auditory-motor entrainment, not general attention entrainment. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Topological Signatures for Population Admixture

USDA-ARS?s Scientific Manuscript database

Topological Signatures for Population AdmixtureDeniz Yorukoglu1, Filippo Utro1, David Kuhn2, Saugata Basu3 and Laxmi Parida1* Abstract Background: As populations with multi-linear transmission (i.e., mixing of genetic material from two parents, say) evolve over generations, the genetic transmission...

Dryout-type critical heat flux in vertical upward annular flow: effects of entrainment rate, initial entrained fraction and diameter

NASA Astrophysics Data System (ADS)

Wu, Zan; Wadekar, Vishwas; Wang, Chenglong; Sunden, Bengt

2018-01-01

This study aims to reveal the effects of liquid entrainment, initial entrained fraction and tube diameter on liquid film dryout in vertical upward annular flow for flow boiling. Entrainment and deposition rates of droplets were included in mass conservation equations to estimate the local liquid film mass flux in annular flow, and the critical vapor quality at dryout conditions. Different entrainment rate correlations were evaluated using flow boiling data of water and organic liquids including n-pentane, iso-octane and R134a. Effect of the initial entrained fraction (IEF) at the churn-to-annular flow transition was also investigated. A transitional Boiling number was proposed to separate the IEF-sensitive region at high Boiling numbers and the IEF-insensitive region at low Boiling numbers. Besides, the diameter effect on dryout vapor quality was studied. The dryout vapor quality increases with decreasing tube diameter. It needs to be pointed out that the dryout characteristics of submillimeter channels might be different because of different mechanisms of dryout, i.e., drying of liquid film underneath long vapor slugs and flow boiling instabilities.

PREMIX: PRivacy-preserving EstiMation of Individual admiXture.

PubMed

Chen, Feng; Dow, Michelle; Ding, Sijie; Lu, Yao; Jiang, Xiaoqian; Tang, Hua; Wang, Shuang

2016-01-01

In this paper we proposed a framework: PRivacy-preserving EstiMation of Individual admiXture (PREMIX) using Intel software guard extensions (SGX). SGX is a suite of software and hardware architectures to enable efficient and secure computation over confidential data. PREMIX enables multiple sites to securely collaborate on estimating individual admixture within a secure enclave inside Intel SGX. We implemented a feature selection module to identify most discriminative Single Nucleotide Polymorphism (SNP) based on informativeness and an Expectation Maximization (EM)-based Maximum Likelihood estimator to identify the individual admixture. Experimental results based on both simulation and 1000 genome data demonstrated the efficiency and accuracy of the proposed framework. PREMIX ensures a high level of security as all operations on sensitive genomic data are conducted within a secure enclave using SGX.

Effect of mineral viscosity-enhancing admixtures on the solidification of evaporator concentrates.

PubMed

Lin, Chung-Yung; Huang, Wan-Ting

2015-11-15

It is known that partial replacement of cement by viscosity-enhancing admixtures, also known as anti-washout admixtures, affects the quality of the waste form or concrete. To reduce the bleeding rate of the paste, the characteristics of various mineral viscosity-enhancing admixtures dispersed in saline solutions were investigated, including sedimentation and viscosity. The admixture candidates included fly ash, silica fume, bentonite, and palygorskite. The effect of these admixtures blended with a cement-based matrix on the bleeding rate of the solidification of evaporator concentrates was also examined in this paper. The experimental results show the palygorskite Type 400 is the best choice to improve the quality of waste form, due to its excellent suspension property in the saline solution. The bleeding rate of paste decreased as the dispersion volume of the admixture suspension increased. For consideration of the quality of waste forms and the concentrate loading, the optimization of the palygorskite/concentrate ratio of 15-17 wt% and solidification agent/concentrate ratio of 1.0-1.2 were adopted. With this recipe, the quality of waste forms resulting from the solidification of simulated and actual evaporator concentrates mainly containing chloride met the regulations' requirements. Copyright © 2015 Elsevier B.V. All rights reserved.

Spontaneous motor entrainment to music in multiple vocal mimicking species.

PubMed

Schachner, Adena; Brady, Timothy F; Pepperberg, Irene M; Hauser, Marc D

2009-05-26

The human capacity for music consists of certain core phenomena, including the tendency to entrain, or align movement, to an external auditory pulse [1-3]. This ability, fundamental both for music production and for coordinated dance, has been repeatedly highlighted as uniquely human [4-11]. However, it has recently been hypothesized that entrainment evolved as a by-product of vocal mimicry, generating the strong prediction that only vocal mimicking animals may be able to entrain [12, 13]. Here we provide comparative data demonstrating the existence of two proficient vocal mimicking nonhuman animals (parrots) that entrain to music, spontaneously producing synchronized movements resembling human dance. We also provide an extensive comparative data set from a global video database systematically analyzed for evidence of entrainment in hundreds of species both capable and incapable of vocal mimicry. Despite the higher representation of vocal nonmimics in the database and comparable exposure of mimics and nonmimics to humans and music, only vocal mimics showed evidence of entrainment. We conclude that entrainment is not unique to humans and that the distribution of entrainment across species supports the hypothesis that entrainment evolved as a by-product of selection for vocal mimicry.

Fluvial entrainment of low density peat blocks (block carbon)

NASA Astrophysics Data System (ADS)

Warburton, Jeff

2014-05-01

In many fluvial environments low density materials are transported in significant quantities and these form an important part of the stream load and /or have a distinct impact on sedimentation in these environments. However, there are significant gaps in understanding of how these materials are entrained and transported by streams and rivers. Eroding upland peatland environments in particular, frequently have fluvial systems in which large eroded peat blocks, often exceeding 1 m in length; form an important component of the stream material flux. Transport of this material is significant in determining rates of erosion but also has important impacts in terms of damage to infrastructure and carbon loss. This paper describes a field experiment designed to establish for the first time the conditions under which large peat blocks (c. > 0.1 m b axis) are initially entrained from a rough gravel bed. The field site is Trout Beck, in the North Pennines, Northern England which is an upland wandering river channel with occasional lateral and mid channel bars. Mean low flow stage is typically 0.2 m but during flood can rapidly rise, in one to two hours, to over 1.5 m. To study peat block entrainment a bespoke data acquisition system consisting of two pressure transducers, four release triggers and time lapse camera was set up. The pressure transducers provided a record of local depth and the release triggers were embedded in peat blocks to record initial motion and arranged on the rough stream bed. The time lapse camera provided verification of timing of block entrainment (during daylight hours) and also provided information on the mechanism of initial movement. Peat blocks were cut from a local source and were equidimensional, ranging in size from 0.1 to 0.7 m. The derived entrainment function is related to a critical depth of entrainment. Results demonstrate that peat blocks are entrained when the local depth approximates the height of the peat block. Blocks frequently shift

Nonphotic entrainment of the human circadian pacemaker

NASA Technical Reports Server (NTRS)

Klerman, E. B.; Rimmer, D. W.; Dijk, D. J.; Kronauer, R. E.; Rizzo, J. F. 3rd; Czeisler, C. A.

1998-01-01

In organisms as diverse as single-celled algae and humans, light is the primary stimulus mediating entrainment of the circadian biological clock. Reports that some totally blind individuals appear entrained to the 24-h day have suggested that nonphotic stimuli may also be effective circadian synchronizers in humans, although the nonphotic stimuli are probably comparatively weak synchronizers, because the circadian rhythms of many totally blind individuals "free run" even when they maintain a 24-h activity-rest schedule. To investigate entrainment by nonphotic synchronizers, we studied the endogenous circadian melatonin and core body temperature rhythms of 15 totally blind subjects who lacked conscious light perception and exhibited no suppression of plasma melatonin in response to ocular bright-light exposure. Nine of these fifteen blind individuals were able to maintain synchronization to the 24-h day, albeit often at an atypical phase angle of entrainment. Nonphotic stimuli also synchronized the endogenous circadian rhythms of a totally blind individual to a non-24-h schedule while living in constant near darkness. We conclude that nonphotic stimuli can entrain the human circadian pacemaker in some individuals lacking ocular circadian photoreception.

Numerical investigation of the entrainment and mixing processes in neutral and stably-stratified mixing layers

NASA Astrophysics Data System (ADS)

Cortesi, A. B.; Smith, B. L.; Yadigaroglu, G.; Banerjee, S.

1999-01-01

The direct numerical simulation (DNS) of a temporally-growing mixing layer has been carried out, for a variety of initial conditions at various Richardson and Prandtl numbers, by means of a pseudo-spectral technique; the main objective being to elucidate how the entrainment and mixing processes in mixing-layer turbulence are altered under the combined influence of stable stratification and thermal conductivity. Stratification is seen to significantly modify the way by which entrainment and mixing occur by introducing highly-localized, convective instabilities, which in turn cause a substantially different three-dimensionalization of the flow compared to the unstratified situation. Fluid which was able to cross the braid region mainly undisturbed (unmixed) in the unstratified case, pumped by the action of rib pairs and giving rise to well-formed mushroom structures, is not available with stratified flow. This is because of the large number of ribs which efficiently mix the fluid crossing the braid region. More efficient entrainment and mixing has been noticed for high Prandtl number computations, where vorticity is significantly reinforced by the baroclinic torque. In liquid sodium, however, for which the Prandtl number is very low, the generation of vorticity is very effectively suppressed by the large thermal conduction, since only small temperature gradients, and thus negligible baroclinic vorticity reinforcement, are then available to counterbalance the effects of buoyancy. This is then reflected in less efficient entrainment and mixing. The influence of the stratification and the thermal conductivity can also be clearly identified from the calculated entrainment coefficients and turbulent Prandtl numbers, which were seen to accurately match experimental data. The turbulent Prandtl number increases rapidly with increasing stratification in liquid sodium, whereas for air and water the stratification effect is less significant. A general law for the entrainment

Analysis of admixture and genetic structure of two Native American groups of Southern Argentinean Patagonia.

PubMed

Sala, Andrea; Corach, Daniel

2014-03-01

Argentinean Patagonia is inhabited by people that live principally in urban areas and by small isolated groups of individuals that belong to indigenous aboriginal groups; this territory exhibits the lowest population density of the country. Mapuche and Tehuelche (Mapudungun linguistic branch), are the only extant Native American groups that inhabit the Argentinean Patagonian provinces of Río Negro and Chubut. Fifteen autosomal STRs, 17 Y-STRs, mtDNA full length control region sequence and two sets of Y and mtDNA-coding region SNPs were analyzed in a set of 434 unrelated individuals. The sample set included two aboriginal groups, a group of individuals whose family name included Native American linguistic root and urban samples from Chubut, Río Negro and Buenos Aires provinces of Argentina. Specific Y Amerindian haplogroup Q1 was found in 87.5% in Mapuche and 58.82% in Tehuelche, while the Amerindian mtDNA haplogroups were present in all the aboriginal sample contributors investigated. Admixture analysis performed by means of autosomal and Y-STRs showed the highest degree of admixture in individuals carrying Mapuche surnames, followed by urban populations, and finally by isolated Native American populations as less degree of admixture. The study provided novel genetic information about the Mapuche and Tehuelche people and allowed us to establish a genetic correlation among individuals with Mapudungun surnames that demonstrates not only a linguistic but also a genetic relationship to the isolated aboriginal communities, representing a suitable proxy indicator for assessing genealogical background.

The ecology of entrainment: Foundations of coordinated rhythmic movement.

PubMed

Phillips-Silver, Jessica; Aktipis, C Athena; Bryant, Gregory A

2010-09-01

Entrainment has been studied in a variety of contexts including music perception, dance, verbal communication and motor coordination more generally. Here we seek to provide a unifying framework that incorporates the key aspects of entrainment as it has been studied in these varying domains. We propose that there are a number of types of entrainment that build upon pre-existing adaptations that allow organisms to perceive stimuli as rhythmic, to produce periodic stimuli, and to integrate the two using sensory feedback. We suggest that social entrainment is a special case of spatiotemporal coordination where the rhythmic signal originates from another individual. We use this framework to understand the function and evolutionary basis for coordinated rhythmic movement and to explore questions about the nature of entrainment in music and dance. The framework of entrainment presented here has a number of implications for the vocal learning hypothesis and other proposals for the evolution of coordinated rhythmic behavior across an array of species.

How to Achieve Fast Entrainment? The Timescale to Synchronization

PubMed Central

Granada, Adrián E.; Herzel, Hanspeter

2009-01-01

Entrainment, where oscillators synchronize to an external signal, is ubiquitous in nature. The transient time leading to entrainment plays a major role in many biological processes. Our goal is to unveil the specific dynamics that leads to fast entrainment. By studying a generic model, we characterize the transient time to entrainment and show how it is governed by two basic properties of an oscillator: the radial relaxation time and the phase velocity distribution around the limit cycle. Those two basic properties are inherent in every oscillator. This concept can be applied to many biological systems to predict the average transient time to entrainment or to infer properties of the underlying oscillator from the observed transients. We found that both a sinusoidal oscillator with fast radial relaxation and a spike-like oscillator with slow radial relaxation give rise to fast entrainment. As an example, we discuss the jet-lag experiments in the mammalian circadian pacemaker. PMID:19774087

The ecology of entrainment: Foundations of coordinated rhythmic movement

PubMed Central

Phillips-Silver, Jessica; Aktipis, C. Athena; Bryant, Gregory A.

2011-01-01

Entrainment has been studied in a variety of contexts including music perception, dance, verbal communication and motor coordination more generally. Here we seek to provide a unifying framework that incorporates the key aspects of entrainment as it has been studied in these varying domains. We propose that there are a number of types of entrainment that build upon pre-existing adaptations that allow organisms to perceive stimuli as rhythmic, to produce periodic stimuli, and to integrate the two using sensory feedback. We suggest that social entrainment is a special case of spatiotemporal coordination where the rhythmic signal originates from another individual. We use this framework to understand the function and evolutionary basis for coordinated rhythmic movement and to explore questions about the nature of entrainment in music and dance. The framework of entrainment presented here has a number of implications for the vocal learning hypothesis and other proposals for the evolution of coordinated rhythmic behavior across an array of species. PMID:21776183

Mechanical Characteristics of Hardened Concrete with Different Mineral Admixtures: A Review

PubMed Central

2014-01-01

The available literature identifies that the addition of mineral admixture as partial replacement of cement improves the microstructure of the concrete (i.e., porosity and pore size distribution) as well as increasing the mechanical characteristics such as drying shrinkage and creep, compressive strength, tensile strength, flexural strength, and modulus of elasticity; however, no single document is available in which review and comparison of the influence of the addition of these mineral admixtures on the mechanical characteristics of the hardened pozzolanic concretes are presented. In this paper, based on the reported results in the literature, mechanical characteristics of hardened concrete partially containing mineral admixtures including fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA) are discussed and it is concluded that the content and particle size of mineral admixture are the parameters which significantly influence the mechanical properties of concrete. All mineral admixtures enhance the mechanical properties of concrete except FA and GGBS which do not show a significant effect on the strength of concrete at 28 days; however, gain in strength at later ages is considerable. Moreover, the comparison of the mechanical characteristics of different pozzolanic concretes suggests that RHA and SF are competitive. PMID:24688443

Mechanical characteristics of hardened concrete with different mineral admixtures: a review.

PubMed

Ayub, Tehmina; Khan, Sadaqat Ullah; Memon, Fareed Ahmed

2014-01-01

The available literature identifies that the addition of mineral admixture as partial replacement of cement improves the microstructure of the concrete (i.e., porosity and pore size distribution) as well as increasing the mechanical characteristics such as drying shrinkage and creep, compressive strength, tensile strength, flexural strength, and modulus of elasticity; however, no single document is available in which review and comparison of the influence of the addition of these mineral admixtures on the mechanical characteristics of the hardened pozzolanic concretes are presented. In this paper, based on the reported results in the literature, mechanical characteristics of hardened concrete partially containing mineral admixtures including fly ash (FA), silica fume (SF), ground granulated blast furnace slag (GGBS), metakaolin (MK), and rice husk ash (RHA) are discussed and it is concluded that the content and particle size of mineral admixture are the parameters which significantly influence the mechanical properties of concrete. All mineral admixtures enhance the mechanical properties of concrete except FA and GGBS which do not show a significant effect on the strength of concrete at 28 days; however, gain in strength at later ages is considerable. Moreover, the comparison of the mechanical characteristics of different pozzolanic concretes suggests that RHA and SF are competitive.

Effect of Mixing Time and Storage Condition on Characterization of Heparinoid Admixtures with Corticosteroids.

PubMed

Sugiyama, Ikumi; Takahashi, Namiki; Sadzuka, Yasuyuki

2016-01-01

In dermatologic therapy, several external preparations formulated as ointments or creams are prescribed. And they are often admixture to improve patient compliance. In this study, we prepared admixtures of moisturizer with steroids and examined their usability and the amount of principal agent in formulations, particularly focusing on the moisturizer content. Four heparinoid semisolid formulations were selected: Hirudoid ® soft ointment 0.3% (Formulation A) and 3 generic agents [(Besoften ® oil-based cream 0.3% (Formulation B), Kuradoido ® ointment 0.3% (Formulation C), and Hepadaerm ointment 0.3% (Formulation D)], and Antebate ® ointment 0.05% (Formulation E) were used as steroids. Formulation A and B are water-in-oil emulsions, and Formulation C and D are oil-in-water emulsions. Admixtures looked like to be mixed uniformly by visual observation. In the examination of heparinoid amount, admixture A+E and B+E were mixed uniformly. On the other hand, admixture C+E was remarkable un-uniformly. It was speculated that the emulsification of formulation C was broken. The phenomenon was supported by the result of malleability. After 8 weeks storage, the heparinoid ratio in each formulation could be expressed as follows: Admixture B≥Admixture A>Admixture C=Admixture D. A suitable storage temperature was 4°C. The results of physicochemical data analysis reveal the formulations composed of water-in-oil cream, i.e., Formulation A and Formulation B, to be the optimal choices for mixing with steroid ointments. Mixing time and storage conditions may be optimized to solve pharmaceutical problems. Moreover, understanding the emulsion type and character of semisolid formulations can expand the range of formulation options.

Projected entrainment of fish resulting from aggregate dredging.

PubMed

Drabble, Ray

2012-02-01

Previous research to assess impacts from aggregate dredging has focussed on infaunal species with few studies made of fish entrainment. Entrainment evidence from hydraulic dredging studies is reviewed to develop a sensitivity index for benthic fish. Environmental monitoring attendant with the granting of new licences in the Eastern Channel Region (ECR) in 2006 offers a unique opportunity to assess the effects of dredging upon fish. Projected theoretical fish entrainment rates are calculated based upon: abundance data from 4m beam trawl sampling of fish species over the period 2005-2008; sensitivity data; and dredging activity and footprint derived from Electronic monitoring System (EMS) data. Results have been compared with actual entrainment rates and also against summary results from independent analysis of the changes in fish population over the period 2005-2008 (Drabble, 2012). The case is made for entrainment surveys to form part of impact monitoring for marine aggregate dredging. Copyright © 2011 Elsevier Ltd. All rights reserved.

A genetic atlas of human admixture history.

PubMed

Hellenthal, Garrett; Busby, George B J; Band, Gavin; Wilson, James F; Capelli, Cristian; Falush, Daniel; Myers, Simon

2014-02-14

Modern genetic data combined with appropriate statistical methods have the potential to contribute substantially to our understanding of human history. We have developed an approach that exploits the genomic structure of admixed populations to date and characterize historical mixture events at fine scales. We used this to produce an atlas of worldwide human admixture history, constructed by using genetic data alone and encompassing over 100 events occurring over the past 4000 years. We identified events whose dates and participants suggest they describe genetic impacts of the Mongol empire, Arab slave trade, Bantu expansion, first millennium CE migrations in Eastern Europe, and European colonialism, as well as unrecorded events, revealing admixture to be an almost universal force shaping human populations.

Percentage entrainment of constituent loads in urban runoff, south Florida

USGS Publications Warehouse

Miller, R.A.

1985-01-01

Runoff quantity and quality data from four urban basins in south Florida were analyzed to determine the entrainment of total nitrogen, total phosphorus, total carbon, chemical oxygen demand, suspended solids, and total lead within the stormwater runoff. Land use of the homogeneously developed basins are residential (single family), highway, commercial, and apartment (multifamily). A computational procedure was used to calculate, for all storms that had water-quality data, the percentage of constituent load entrainment in specified depths of runoff. The plot of percentage of constituent load entrained as a function of runoff is termed the percentage-entrainment curve. Percentage-entrainment curves were developed for three different source areas of basin runoff: (1) the hydraulically effective impervious area, (2) the contributing area, and (3) the drainage area. With basin runoff expressed in inches over the contributing area, the depth of runoff required to remove 90 percent of the constituent load ranged from about 0.4 inch to about 1.4 inches; and to remove 80 percent, from about 0.3 to 0.9 inch. Analysis of variance, using depth of runoff from the contributing area as the response variable, showed that the factor 'basin' is statistically significant, but that the factor 'constituent' is not statistically significant in the forming of the percentage-entrainment curve. Evidently the sewerage design, whether elongated or concise in plan dictates the shape of the percentage-entrainment curve. The percentage-entrainment curves for all constituents were averaged for each basin and plotted against basin runoff for three source areas of runoff-the hydraulically effective impervious area, the contributing area, and the drainage area. The relative positions of the three curves are directly related to the relative sizes of the three source areas considered. One general percentage-entrainment curve based on runoff from the contributing area was formed by averaging across

A Balanced Diet Is Necessary for Proper Entrainment Signals of the Mouse Liver Clock

PubMed Central

Hirao, Akiko; Tahara, Yu; Kimura, Ichiro; Shibata, Shigenobu

2009-01-01

Background The peripheral circadian clock in mice is entrained not only by light-dark cycles but also by daily restricted feeding schedules. Behavioral and cell culture experiments suggest an increase in glucose level as a factor in such feeding-induced entrainment. For application of feeding-induced entrainment in humans, nutrient content and dietary variations should be considered. Principal Finding To elucidate the food composition necessary for dietary entrainment, we examined whether complete or partial substitution of dietary nutrients affected phase shifts in liver clocks of mice. Compared with fasting mice or ad libitum fed mice, the liver bioluminescence rhythm advanced by 3–4 h on the middle day in Per2::luciferase knock-in mice that were administered a standard mouse diet, i.e. AIN-93M formula [0.6–0.85 g/10 g mouse BW] (composition: 14% casein, 47% cornstarch, 15% gelatinized cornstarch, 10% sugar, 4% soybean oil, and 10% other [fiber, vitamins, minerals, etc.]), for 2 days. When each nutrient was tested alone (100% nutrient), an insignificant weak phase advance was found to be induced by cornstarch and soybean oil, but almost no phase advance was induced by gelatinized cornstarch, high-amylose cornstarch, glucose, sucrose, or casein. A combination of glucose and casein without oil, vitamin, or fiber caused a significant phase advance. When cornstarch in AIN-93M was substituted with glucose, sucrose, fructose, polydextrose, high-amylose cornstarch, or gelatinized cornstarch, the amplitude of phase advance paralleled the increase in blood glucose concentration. Conclusions Our results strongly suggest the following: (1) balanced diets containing carbohydrates/sugars and proteins are good for restricted feeding-induced entrainment of the peripheral circadian clock and (2) a balanced diet that increases blood glucose, but not by sugar alone, is suitable for entrainment. These findings may assist in the development of dietary recommendations for on

Contact Line Instability Caused by Air Rim Formation under Nonsplashing Droplets.

PubMed

Pack, Min; Kaneelil, Paul; Kim, Hyoungsoo; Sun, Ying

2018-05-01

Drop impact is fundamental to various natural and industrial processes such as rain-induced soil erosion and spray-coating technologies. The recent discovery of the role of air entrainment between the droplet and the impacting surface has produced numerous works, uncovering the unique physics that correlates the air film dynamics with the drop impact outcomes. In this study, we focus on the post-failure air entrainment dynamics for We numbers well below the splash threshold under different ambient pressures and elucidate the interfacial instabilities formed by air entrainment at the wetting front of impacting droplets on perfectly smooth, viscous films of constant thickness. A high-speed total internal reflection microscopy technique accounting for the Fresnel reflection at the drop-air interface allows for in situ measurements of an entrained air rim at the wetting front. The presence of an air rim is found to be a prerequisite to the interfacial instability which is formed when the capillary pressure in the vicinity of the contact line can no longer balance the increasing gas pressure near the wetting front. A critical capillary number for the air rim formation is experimentally identified above which the wetting front becomes unstable where this critical capillary number inversely scales with the ambient pressure. The contact line instabilities at relatively low We numbers ( We ∼ O(10)) observed in this study provide insight into the conventional understanding of hydrodynamic instabilities under drop impact which usually require We ≫ 10.

The Genetic Legacy of the Indian Ocean Slave Trade: Recent Admixture and Post-admixture Selection in the Makranis of Pakistan.

PubMed

Laso-Jadart, Romuald; Harmant, Christine; Quach, Hélène; Zidane, Nora; Tyler-Smith, Chris; Mehdi, Qasim; Ayub, Qasim; Quintana-Murci, Lluis; Patin, Etienne

2017-12-07

From the eighth century onward, the Indian Ocean was the scene of extensive trade of sub-Saharan African slaves via sea routes controlled by Muslim Arab and Swahili traders. Several populations in present-day Pakistan and India are thought to be the descendants of such slaves, yet their history of admixture and natural selection remains largely undefined. Here, we studied the genome-wide diversity of the African-descent Makranis, who reside on the Arabian Sea coast of Pakistan, as well that of four neighboring Pakistani populations, to investigate the genetic legacy, population dynamics, and tempo of the Indian Ocean slave trade. We show that the Makranis are the result of an admixture event between local Baluch tribes and Bantu-speaking populations from eastern or southeastern Africa; we dated this event to ∼300 years ago during the Omani Empire domination. Levels of parental relatedness, measured through runs of homozygosity, were found to be similar across Pakistani populations, suggesting that the Makranis rapidly adopted the traditional practice of endogamous marriages. Finally, we searched for signatures of post-admixture selection at traits evolving under positive selection, including skin color, lactase persistence, and resistance to malaria. We demonstrate that the African-specific Duffy-null blood group-believed to confer resistance against Plasmodium vivax infection-was recently introduced to Pakistan through the slave trade and evolved adaptively in this P. vivax malaria-endemic region. Our study reconstructs the genetic and adaptive history of a neglected episode of the African Diaspora and illustrates the impact of recent admixture on the diffusion of adaptive traits across human populations. Copyright © 2017 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

A Spatial Framework for Understanding Population Structure and Admixture.

PubMed

Bradburd, Gideon S; Ralph, Peter L; Coop, Graham M

2016-01-01

Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build "geogenetic maps," which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix.

A Novel Admixture-Based Pharmacogenetic Approach to Refine Warfarin Dosing in Caribbean Hispanics.

PubMed

Duconge, Jorge; Ramos, Alga S; Claudio-Campos, Karla; Rivera-Miranda, Giselle; Bermúdez-Bosch, Luis; Renta, Jessicca Y; Cadilla, Carmen L; Cruz, Iadelisse; Feliu, Juan F; Vergara, Cunegundo; Ruaño, Gualberto

2016-01-01

This study is aimed at developing a novel admixture-adjusted pharmacogenomic approach to individually refine warfarin dosing in Caribbean Hispanic patients. A multiple linear regression analysis of effective warfarin doses versus relevant genotypes, admixture, clinical and demographic factors was performed in 255 patients and further validated externally in another cohort of 55 individuals. The admixture-adjusted, genotype-guided warfarin dosing refinement algorithm developed in Caribbean Hispanics showed better predictability (R2 = 0.70, MAE = 0.72mg/day) than a clinical algorithm that excluded genotypes and admixture (R2 = 0.60, MAE = 0.99mg/day), and outperformed two prior pharmacogenetic algorithms in predicting effective dose in this population. For patients at the highest risk of adverse events, 45.5% of the dose predictions using the developed pharmacogenetic model resulted in ideal dose as compared with only 29% when using the clinical non-genetic algorithm (p<0.001). The admixture-driven pharmacogenetic algorithm predicted 58% of warfarin dose variance when externally validated in 55 individuals from an independent validation cohort (MAE = 0.89 mg/day, 24% mean bias). Results supported our rationale to incorporate individual's genotypes and unique admixture metrics into pharmacogenetic refinement models in order to increase predictability when expanding them to admixed populations like Caribbean Hispanics. ClinicalTrials.gov NCT01318057.

Neandertal admixture in Eurasia confirmed by maximum-likelihood analysis of three genomes.

PubMed

Lohse, Konrad; Frantz, Laurent A F

2014-04-01

Although there has been much interest in estimating histories of divergence and admixture from genomic data, it has proved difficult to distinguish recent admixture from long-term structure in the ancestral population. Thus, recent genome-wide analyses based on summary statistics have sparked controversy about the possibility of interbreeding between Neandertals and modern humans in Eurasia. Here we derive the probability of full mutational configurations in nonrecombining sequence blocks under both admixture and ancestral structure scenarios. Dividing the genome into short blocks gives an efficient way to compute maximum-likelihood estimates of parameters. We apply this likelihood scheme to triplets of human and Neandertal genomes and compare the relative support for a model of admixture from Neandertals into Eurasian populations after their expansion out of Africa against a history of persistent structure in their common ancestral population in Africa. Our analysis allows us to conclusively reject a model of ancestral structure in Africa and instead reveals strong support for Neandertal admixture in Eurasia at a higher rate (3.4-7.3%) than suggested previously. Using analysis and simulations we show that our inference is more powerful than previous summary statistics and robust to realistic levels of recombination.

Effect of Gum Arabic karroo as a Water-Reducing Admixture in Concrete

PubMed Central

Mbugua, Rose; Salim, Ramadhan; Ndambuki, Julius

2016-01-01

Concrete is one of the most popular construction materials in the world. Chemical admixtures are ingredients added to concrete to enhance its properties. However, most chemical admixtures on the market today are expensive, thereby making them out of reach for small consumers of concrete. In Africa, use of chemical admixtures is rare despite the harsh weather conditions. In the current study, Gum from Acacia karroo (GAK) was used as a water-reducing admixture in concrete. A slump test, density and compressive strength were studied using different dosages of GAK while neat concrete was the control. Results showed that slump increased by 200% at a 2% dosage of GAK. This enabled reduction of water-to-binder (w/b) ratio from 0.61 to 0.48 for samples with a 3% dosage. Reduction in w/b resulted in increased compressive strength of 37.03% above the control after 180 days of curing for a 3% dosage. XRD studies also showed a decreased rate of hydration in the presence of GAK in concrete. It was concluded that GAK can be used in concrete as a water-reducing admixture, which is environmentally-friendly, thus producing sustainable and greener concrete. PMID:28787879

Effect of Gum Arabic karroo as a Water-Reducing Admixture in Concrete.

PubMed

Mbugua, Rose; Salim, Ramadhan; Ndambuki, Julius

2016-01-28

Concrete is one of the most popular construction materials in the world. Chemical admixtures are ingredients added to concrete to enhance its properties. However, most chemical admixtures on the market today are expensive, thereby making them out of reach for small consumers of concrete. In Africa, use of chemical admixtures is rare despite the harsh weather conditions. In the current study, Gum from Acacia karroo (GAK) was used as a water-reducing admixture in concrete. A slump test, density and compressive strength were studied using different dosages of GAK while neat concrete was the control. Results showed that slump increased by 200% at a 2% dosage of GAK. This enabled reduction of water-to-binder (w/b) ratio from 0.61 to 0.48 for samples with a 3% dosage. Reduction in w/b resulted in increased compressive strength of 37.03% above the control after 180 days of curing for a 3% dosage. XRD studies also showed a decreased rate of hydration in the presence of GAK in concrete. It was concluded that GAK can be used in concrete as a water-reducing admixture, which is environmentally-friendly, thus producing sustainable and greener concrete.

Examination of turbulent entrainment-mixing mechanisms using a combined approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, C.; Liu, Y.; Niu, S.

2011-10-01

Turbulent entrainment-mixing mechanisms are investigated by applying a combined approach to the aircraft measurements of three drizzling and two nondrizzling stratocumulus clouds collected over the U.S. Department of Energy's Atmospheric Radiation Measurement Southern Great Plains site during the March 2000 cloud Intensive Observation Period. Microphysical analysis shows that the inhomogeneous entrainment-mixing process occurs much more frequently than the homogeneous counterpart, and most cases of the inhomogeneous entrainment-mixing process are close to the extreme scenario, having drastically varying cloud droplet concentration but roughly constant volume-mean radius. It is also found that the inhomogeneous entrainment-mixing process can occur both near the cloudmore » top and in the middle level of a cloud, and in both the nondrizzling clouds and nondrizzling legs in the drizzling clouds. A new dimensionless number, the scale number, is introduced as a dynamical measure for different entrainment-mixing processes, with a larger scale number corresponding to a higher degree of homogeneous entrainment mixing. Further empirical analysis shows that the scale number that separates the homogeneous from the inhomogeneous entrainment-mixing process is around 50, and most legs have smaller scale numbers. Thermodynamic analysis shows that sampling average of filament structures finer than the instrumental spatial resolution also contributes to the dominance of inhomogeneous entrainment-mixing mechanism. The combined microphysical-dynamical-thermodynamic analysis sheds new light on developing parameterization of entrainment-mixing processes and their microphysical and radiative effects in large-scale models.« less

How important is intraspecific genetic admixture to the success of colonising populations?

EPA Science Inventory

Genetic admixture of divergent lineages is increasingly suspected to play an important role in the success of colonizing populations. This has become a particularly prominent theme in the literature on biological invasions, where admixture is now commonly proposed as an important...

A genetic atlas of human admixture history

PubMed Central

Hellenthal, Garrett; Busby, George B.J.; Band, Gavin; Wilson, James F.; Capelli, Cristian

2014-01-01

Modern genetic data combined with appropriate statistical methods have the potential to contribute substantially to our understanding of human history. We have developed an approach that exploits the genomic structure of admixed populations to date and characterize historical mixture events at fine scales. We used this to produce an atlas of worldwide human admixture history, constructed using genetic data alone and encompassing over 100 events occurring over the past 4,000 years. We identify events whose dates and participants suggest they describe genetic impacts of the Mongol Empire, Arab slave trade, Bantu expansion, first millennium CE migrations in eastern Europe, and European colonialism, as well as unrecorded events, revealing admixture to be an almost universal force shaping human populations. PMID:24531965

Entrainment and high-density three-dimensional mapping in right atrial macroreentry provide critical complementary information: Entrainment may unmask "visual reentry" as passive.

PubMed

Pathik, Bhupesh; Lee, Geoffrey; Nalliah, Chrishan; Joseph, Stephen; Morton, Joseph B; Sparks, Paul B; Sanders, Prashanthan; Kistler, Peter M; Kalman, Jonathan M

2017-10-01

With the recent advent of high-density (HD) 3-dimensional (3D) mapping, the utility of entrainment is uncertain. However, the limitations of visual representation and interpretation of these high-resolution 3D maps are unclear. The purpose of this study was to determine the strengths and limitations of both HD 3D mapping and entrainment mapping during mapping of right atrial macroreentry. Fifteen patients were studied. The number and type of circuits accounting for ≥90% of the tachycardia cycle length using HD 3D mapping were verified using systematic entrainment mapping. Entrainment sites with an unexpectedly long postpacing interval despite proximity to the active circuit were evaluated. Based on HD 3D mapping, 27 circuits were observed: 12 peritricuspid, 2 upper loop reentry, 10 lower loop reentry, and 3 lateral wall circuits. With entrainment, 17 of the 27 circuits were active: all 12 peritricuspid and 2 upper loop reentry. However, lower loop reentry was confirmed in only 3 of 10, and none of the 3 lateral wall circuits were present. Mean percentage of tachycardia cycle length covered by active circuits was 98% ± 1% vs 97% ± 2% for passive circuits (P = .09). None of the 345 entrainment runs terminated tachycardia or changed tachycardia mechanism. In 8 of 15 patients, 13 examples of unexpectedly long postpacing interval were observed at entrainment sites located distal to localized zones of slow conduction seen on HD 3D mapping. Using HD 3D mapping, "visual reentry" may be due to passive circuitous propagation rather than a critical reentrant circuit. HD 3D mapping provides new insights into regional conduction and helps explain unusual entrainment phenomena. Copyright © 2017 Heart Rhythm Society. Published by Elsevier Inc. All rights reserved.

Flowmeter for gas-entrained solids flow

DOEpatents

Porges, Karl G.

1990-01-01

An apparatus and method for the measurement of solids feedrate in a gas-entrained solids flow conveyance system. The apparatus and method of the present invention include a vertical duct connecting a source of solids to the gas-entrained flow conveyance system, a control valve positioned in the vertical duct, and a capacitive densitometer positioned along the duct at a location a known distance below the control valved so that the solid feedrate, Q, of the gas entrained flow can be determined by Q=S.rho..phi.V.sub.S where S is the cross sectional area of the duct, .rho. is the density of the solid, .phi. is the solid volume fraction determined by the capacitive densitometer, and v.sub.S is the local solid velocity which can be inferred from the konown distance of the capacitive densitometer below the control valve.

The dependence of entrainment and drizzle in marine stratiform clouds on biomass burning aerosols derived from stable isotope and thermodynamic profiles

NASA Astrophysics Data System (ADS)

Henze, D.; Noone, D.

2017-12-01

A third of the world's biomass burning aerosol (BBA) particles are generated in southern Africa, and these particles are swept into the midlevel troposphere over the southeast Atlantic Ocean. The presence of these aerosols over the marine environment of the south east Atlantic offers a unique natural laboratory for studying aerosol effects on climate, and specifically a modification to the hydrologic cycle and microphysical characteristics of clouds. Different rates of condensation with high aerosol numbers change the precipitation rates in drizzling stratiform clouds, while the mixing of aerosols into the cloud layer is synonymous with entrainment from above cloud top near the top of the subtropical inversion. To better understanding the magnitude of the aerosol influence on southeast Atlantic boundary layer clouds we analyze the cloud-top entrainment and drizzle as a function of aerosol loading to determine the impact of BBA. Entrainment was determined from mixing line analysis based on profile measurements of moist static energy, total water, and the two most common heavy isotopes of water - HDO and H218O. Data was collected on the P-3 Orion aircraft during the NASA 2017 ORACLES campaign. Using these measurements, a box model was constructed using the combined conservation laws associated with all four of these quantities to estimate the entrainment and rainout of cloud liquid. The population of profiles sampled by the aircraft over the course of the 30 day mission spans varying concentrations of BBA. Initial plots of the water isotope mixing lines show where and to what degree the BBA air mass has mixed into the boundary layer air mass from above. This is demonstrated by the fact that the mixing end-members are the same for the different areas sampled, but the rate at which the various mixing lines are traversed as a function of altitude varies. Further, the mixing lines as a function of height traverse back and forth between end members multiple times over one

A Novel Admixture-Based Pharmacogenetic Approach to Refine Warfarin Dosing in Caribbean Hispanics

PubMed Central

Claudio-Campos, Karla; Rivera-Miranda, Giselle; Bermúdez-Bosch, Luis; Renta, Jessicca Y.; Cadilla, Carmen L.; Cruz, Iadelisse; Feliu, Juan F.; Vergara, Cunegundo; Ruaño, Gualberto

2016-01-01

Aim This study is aimed at developing a novel admixture-adjusted pharmacogenomic approach to individually refine warfarin dosing in Caribbean Hispanic patients. Patients & Methods A multiple linear regression analysis of effective warfarin doses versus relevant genotypes, admixture, clinical and demographic factors was performed in 255 patients and further validated externally in another cohort of 55 individuals. Results The admixture-adjusted, genotype-guided warfarin dosing refinement algorithm developed in Caribbean Hispanics showed better predictability (R2 = 0.70, MAE = 0.72mg/day) than a clinical algorithm that excluded genotypes and admixture (R2 = 0.60, MAE = 0.99mg/day), and outperformed two prior pharmacogenetic algorithms in predicting effective dose in this population. For patients at the highest risk of adverse events, 45.5% of the dose predictions using the developed pharmacogenetic model resulted in ideal dose as compared with only 29% when using the clinical non-genetic algorithm (p<0.001). The admixture-driven pharmacogenetic algorithm predicted 58% of warfarin dose variance when externally validated in 55 individuals from an independent validation cohort (MAE = 0.89 mg/day, 24% mean bias). Conclusions Results supported our rationale to incorporate individual’s genotypes and unique admixture metrics into pharmacogenetic refinement models in order to increase predictability when expanding them to admixed populations like Caribbean Hispanics. Trial Registration ClinicalTrials.gov NCT01318057 PMID:26745506

Timescales of Massive Human Entrainment

PubMed Central

Fusaroli, Riccardo; Perlman, Marcus; Mislove, Alan; Paxton, Alexandra; Matlock, Teenie; Dale, Rick

2015-01-01

The past two decades have seen an upsurge of interest in the collective behaviors of complex systems composed of many agents entrained to each other and to external events. In this paper, we extend the concept of entrainment to the dynamics of human collective attention. We conducted a detailed investigation of the unfolding of human entrainment—as expressed by the content and patterns of hundreds of thousands of messages on Twitter—during the 2012 US presidential debates. By time-locking these data sources, we quantify the impact of the unfolding debate on human attention at three time scales. We show that collective social behavior covaries second-by-second to the interactional dynamics of the debates: A candidate speaking induces rapid increases in mentions of his name on social media and decreases in mentions of the other candidate. Moreover, interruptions by an interlocutor increase the attention received. We also highlight a distinct time scale for the impact of salient content during the debates: Across well-known remarks in each debate, mentions in social media start within 5–10 seconds after it occurs; peak at approximately one minute; and slowly decay in a consistent fashion across well-known events during the debates. Finally, we show that public attention after an initial burst slowly decays through the course of the debates. Thus we demonstrate that large-scale human entrainment may hold across a number of distinct scales, in an exquisitely time-locked fashion. The methods and results pave the way for careful study of the dynamics and mechanisms of large-scale human entrainment. PMID:25880357

A Spatial Framework for Understanding Population Structure and Admixture

PubMed Central

Bradburd, Gideon S.; Ralph, Peter L.; Coop, Graham M.

2016-01-01

Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build “geogenetic maps,” which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix. PMID:26771578

Neandertal Admixture in Eurasia Confirmed by Maximum-Likelihood Analysis of Three Genomes

PubMed Central

Lohse, Konrad; Frantz, Laurent A. F.

2014-01-01

Although there has been much interest in estimating histories of divergence and admixture from genomic data, it has proved difficult to distinguish recent admixture from long-term structure in the ancestral population. Thus, recent genome-wide analyses based on summary statistics have sparked controversy about the possibility of interbreeding between Neandertals and modern humans in Eurasia. Here we derive the probability of full mutational configurations in nonrecombining sequence blocks under both admixture and ancestral structure scenarios. Dividing the genome into short blocks gives an efficient way to compute maximum-likelihood estimates of parameters. We apply this likelihood scheme to triplets of human and Neandertal genomes and compare the relative support for a model of admixture from Neandertals into Eurasian populations after their expansion out of Africa against a history of persistent structure in their common ancestral population in Africa. Our analysis allows us to conclusively reject a model of ancestral structure in Africa and instead reveals strong support for Neandertal admixture in Eurasia at a higher rate (3.4−7.3%) than suggested previously. Using analysis and simulations we show that our inference is more powerful than previous summary statistics and robust to realistic levels of recombination. PMID:24532731

Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs

PubMed Central

Monzón, J.; Kays, R.; Dykhuizen, D. E.

2014-01-01

The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single nucleotide polymorphisms in 427 canids in order to examine the prevalence, spatial distribution, and ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, reveal a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. PMID:24148003

Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs.

PubMed

Monzón, J; Kays, R; Dykhuizen, D E

2014-01-01

The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic range and dietary niche. Furthermore, hybridization between coyotes and domestic dogs may facilitate adaptation to human-dominated environments. We genotyped 63 ancestry-informative single-nucleotide polymorphisms in 427 canids to examine the prevalence, spatial distribution and the ecology of admixture in eastern coyotes. Using multivariate methods and Bayesian clustering analyses, we estimated the relative contributions of western coyotes, western and eastern wolves, and domestic dogs to the admixed ancestry of Ohio and eastern coyotes. We found that eastern coyotes form an extensive hybrid swarm, with all our samples having varying levels of admixture. Ohio coyotes, previously thought to be free of admixture, are also highly admixed with wolves and dogs. Coyotes in areas of high deer density are genetically more wolf-like, suggesting that natural selection for wolf-like traits may result in local adaptation at a fine geographic scale. Our results, in light of other previously published studies of admixture in Canis, revealed a pattern of sex-biased hybridization, presumably generated by male wolves and dogs mating with female coyotes. This study is the most comprehensive genetic survey of admixture in eastern coyotes and demonstrates that the frequency and scope of hybridization can be quantified with relatively few ancestry-informative markers. © 2013 John Wiley & Sons Ltd.

The time and place of European admixture in Ashkenazi Jewish history.

PubMed

Xue, James; Lencz, Todd; Darvasi, Ariel; Pe'er, Itsik; Carmi, Shai

2017-04-01

The Ashkenazi Jewish (AJ) population is important in genetics due to its high rate of Mendelian disorders. AJ appeared in Europe in the 10th century, and their ancestry is thought to comprise European (EU) and Middle-Eastern (ME) components. However, both the time and place of admixture are subject to debate. Here, we attempt to characterize the AJ admixture history using a careful application of new and existing methods on a large AJ sample. Our main approach was based on local ancestry inference, in which we first classified each AJ genomic segment as EU or ME, and then compared allele frequencies along the EU segments to those of different EU populations. The contribution of each EU source was also estimated using GLOBETROTTER and haplotype sharing. The time of admixture was inferred based on multiple statistics, including ME segment lengths, the total EU ancestry per chromosome, and the correlation of ancestries along the chromosome. The major source of EU ancestry in AJ was found to be Southern Europe (≈60-80% of EU ancestry), with the rest being likely Eastern European. The inferred admixture time was ≈30 generations ago, but multiple lines of evidence suggest that it represents an average over two or more events, pre- and post-dating the founder event experienced by AJ in late medieval times. The time of the pre-bottleneck admixture event, which was likely Southern European, was estimated to ≈25-50 generations ago.

The time and place of European admixture in Ashkenazi Jewish history

PubMed Central

Xue, James; Lencz, Todd; Darvasi, Ariel; Pe’er, Itsik

2017-01-01

The Ashkenazi Jewish (AJ) population is important in genetics due to its high rate of Mendelian disorders. AJ appeared in Europe in the 10th century, and their ancestry is thought to comprise European (EU) and Middle-Eastern (ME) components. However, both the time and place of admixture are subject to debate. Here, we attempt to characterize the AJ admixture history using a careful application of new and existing methods on a large AJ sample. Our main approach was based on local ancestry inference, in which we first classified each AJ genomic segment as EU or ME, and then compared allele frequencies along the EU segments to those of different EU populations. The contribution of each EU source was also estimated using GLOBETROTTER and haplotype sharing. The time of admixture was inferred based on multiple statistics, including ME segment lengths, the total EU ancestry per chromosome, and the correlation of ancestries along the chromosome. The major source of EU ancestry in AJ was found to be Southern Europe (≈60–80% of EU ancestry), with the rest being likely Eastern European. The inferred admixture time was ≈30 generations ago, but multiple lines of evidence suggest that it represents an average over two or more events, pre- and post-dating the founder event experienced by AJ in late medieval times. The time of the pre-bottleneck admixture event, which was likely Southern European, was estimated to ≈25–50 generations ago. PMID:28376121

Cortical entrainment to music and its modulation by expertise

PubMed Central

Doelling, Keith B.; Poeppel, David

2015-01-01

Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta–theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15–30 Hz)—often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition. PMID:26504238

Cortical entrainment to music and its modulation by expertise.

PubMed

Doelling, Keith B; Poeppel, David

2015-11-10

Recent studies establish that cortical oscillations track naturalistic speech in a remarkably faithful way. Here, we test whether such neural activity, particularly low-frequency (<8 Hz; delta-theta) oscillations, similarly entrain to music and whether experience modifies such a cortical phenomenon. Music of varying tempi was used to test entrainment at different rates. In three magnetoencephalography experiments, we recorded from nonmusicians, as well as musicians with varying years of experience. Recordings from nonmusicians demonstrate cortical entrainment that tracks musical stimuli over a typical range of tempi, but not at tempi below 1 note per second. Importantly, the observed entrainment correlates with performance on a concurrent pitch-related behavioral task. In contrast, the data from musicians show that entrainment is enhanced by years of musical training, at all presented tempi. This suggests a bidirectional relationship between behavior and cortical entrainment, a phenomenon that has not previously been reported. Additional analyses focus on responses in the beta range (∼15-30 Hz)-often linked to delta activity in the context of temporal predictions. Our findings provide evidence that the role of beta in temporal predictions scales to the complex hierarchical rhythms in natural music and enhances processing of musical content. This study builds on important findings on brainstem plasticity and represents a compelling demonstration that cortical neural entrainment is tightly coupled to both musical training and task performance, further supporting a role for cortical oscillatory activity in music perception and cognition.

Doing Duo - a case study of entrainment in William Forsythe's choreography "Duo".

PubMed

Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E

2014-01-01

Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe's choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models.

The effect of entrainment through atmospheric boundary layer growth on observed and modeled surface ozone in the Colorado Front Range

NASA Astrophysics Data System (ADS)

Kaser, L.; Patton, E. G.; Pfister, G. G.; Weinheimer, A. J.; Montzka, D. D.; Flocke, F.; Thompson, A. M.; Stauffer, R. M.; Halliday, H. S.

2017-06-01

Ozone concentrations at the Earth's surface are controlled by meteorological and chemical processes and are a function of advection, entrainment, deposition, and net chemical production/loss. The relative contributions of these processes vary in time and space. Understanding the relative importance of these processes controlling surface ozone concentrations is an essential component for designing effective regulatory strategies. Here we focus on the diurnal cycle of entrainment through atmospheric boundary layer (ABL) growth in the Colorado Front Range. Aircraft soundings and surface observations collected in July/August 2014 during the DISCOVER-AQ/FRAPPÉ (Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality/Front Range Air Pollution and Photochemistry Éxperiment) campaigns and equivalent data simulated by a regional chemical transport model are analyzed. Entrainment through ABL growth is most important in the early morning, fumigating the surface at a rate of 5 ppbv/h. The fumigation effect weakens near noon and changes sign to become a small dilution effect in the afternoon on the order of -1 ppbv/h. The chemical transport model WRF-Chem (Weather Research and Forecasting Model with chemistry) underestimates ozone at all altitudes during this study on the order of 10-15 ppbv. The entrainment through ABL growth is overestimated by the model in the order of 0.6-0.8 ppbv/h. This results from differences in boundary layer growth in the morning and ozone concentration jump across the ABL top in the afternoon. This implicates stronger modeled fumigation in the morning and weaker modeled dilution after 11:00 LT.

A New Approach for Estimating Entrainment Rate in Cumulus Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu C.; Liu, Y.; Yum, S. S.

2012-02-16

A new approach is presented to estimate entrainment rate in cumulus clouds. The new approach is directly derived from the definition of fractional entrainment rate and relates it to mixing fraction and the height above cloud base. The results derived from the new approach compare favorably with those obtained with a commonly used approach, and have smaller uncertainty. This new approach has several advantages: it eliminates the need for in-cloud measurements of temperature and water vapor content, which are often problematic in current aircraft observations; it has the potential for straightforwardly connecting the estimation of entrainment rate and the microphysicalmore » effects of entrainment-mixing processes; it also has the potential for developing a remote sensing technique to infer entrainment rate.« less

Modeling quiescent phase transport of air bubbles induced by breaking waves

NASA Astrophysics Data System (ADS)

Shi, Fengyan; Kirby, James T.; Ma, Gangfeng

Simultaneous modeling of both the acoustic phase and quiescent phase of breaking wave-induced air bubbles involves a large range of length scales from microns to meters and time scales from milliseconds to seconds, and thus is computational unaffordable in a surfzone-scale computational domain. In this study, we use an air bubble entrainment formula in a two-fluid model to predict air bubble evolution in the quiescent phase in a breaking wave event. The breaking wave-induced air bubble entrainment is formulated by connecting the shear production at the air-water interface and the bubble number intensity with a certain bubble size spectra observed in laboratory experiments. A two-fluid model is developed based on the partial differential equations of the gas-liquid mixture phase and the continuum bubble phase, which has multiple size bubble groups representing a polydisperse bubble population. An enhanced 2-DV VOF (Volume of Fluid) model with a k - ɛ turbulence closure is used to model the mixture phase. The bubble phase is governed by the advection-diffusion equations of the gas molar concentration and bubble intensity for groups of bubbles with different sizes. The model is used to simulate air bubble plumes measured in laboratory experiments. Numerical results indicate that, with an appropriate parameter in the air entrainment formula, the model is able to predict the main features of bubbly flows as evidenced by reasonable agreement with measured void fraction. Bubbles larger than an intermediate radius of O(1 mm) make a major contribution to void fraction in the near-crest region. Smaller bubbles tend to penetrate deeper and stay longer in the water column, resulting in significant contribution to the cross-sectional area of the bubble cloud. An underprediction of void fraction is found at the beginning of wave breaking when large air pockets take place. The core region of high void fraction predicted by the model is dislocated due to use of the shear

Turbulent entrainment across turbulent-nonturbulent interfaces in stably stratified mixing layers

NASA Astrophysics Data System (ADS)

Watanabe, T.; Riley, J. J.; Nagata, K.

2017-10-01

The entrainment process in stably stratified mixing layers is studied in relation to the turbulent-nonturbulent interface (TNTI) using direct numerical simulations. The statistics are calculated with the interface coordinate in an Eulerian frame as well as with the Lagrangian fluid particles entrained from the nonturbulent to the turbulent regions. The characteristics of entrainment change as the buoyancy Reynolds number Reb decreases and the flow begins to layer. The baroclinic torque delays the enstrophy growth of the entrained fluids at small Reb, while this effect is less efficient for large Reb. The entrained particle movement within the TNTI layer is dominated by the small dissipative scales, and the rapid decay of the kinetic energy dissipation rate due to buoyancy causes the entrained particle movement relative to the interface location to become slower. Although the Eulerian statistics confirm that there exists turbulent fluid with strong vorticity or with large buoyancy frequency near the TNTI, the entrained fluid particles circumvent these regions by passing through the TNTI in strain-dominant regions or in regions with small buoyancy frequency. The multiparticle statistics show that once the nonturbulent fluid volumes are entrained, they are deformed into flattened shapes in the vertical direction and diffuse in the horizontal direction. When Reb is large enough for small-scale turbulence to exist, the entrained fluid is able to penetrate into the turbulent core region. Once the flow begins to layer with decreasing Reb, however, the entrained fluid volume remains near the outer edge of the turbulent region and forms a stably stratified layer without vertical overturning.

Evaluate the Use of Mineral Admixtures in Concrete to Mitigate Alkali-Silica Reactivity.

DOT National Transportation Integrated Search

1996-12-01

The increased use of mineral admixtures in portland cement concrete demands a better understanding of their properties and effects on hardened concrete. One of several beneficial advantages of mineral admixtures like flyash and silica fume is their p...

Worldwide patterns of genomic variation and admixture in gray wolves.

PubMed

Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K

2016-02-01

The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter-gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. © 2016 Fan et al.; Published by Cold Spring Harbor Laboratory Press.

Worldwide patterns of genomic variation and admixture in gray wolves

PubMed Central

Fan, Zhenxin; Silva, Pedro; Gronau, Ilan; Wang, Shuoguo; Armero, Aitor Serres; Schweizer, Rena M.; Ramirez, Oscar; Pollinger, John; Galaverni, Marco; Ortega Del-Vecchyo, Diego; Du, Lianming; Zhang, Wenping; Zhang, Zhihe; Xing, Jinchuan; Vilà, Carles; Marques-Bonet, Tomas; Godinho, Raquel; Yue, Bisong; Wayne, Robert K.

2016-01-01

The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a data set of 34 canine genomes. The divergence between New and Old World wolves is the earliest branching event and is followed by the divergence of Old World wolves and dogs, confirming that the dog was domesticated in the Old World. However, no single wolf population is more closely related to dogs, supporting the hypothesis that dogs were derived from an extinct wolf population. All extant wolves have a surprisingly recent common ancestry and experienced a dramatic population decline beginning at least ∼30 thousand years ago (kya). We suggest this crisis was related to the colonization of Eurasia by modern human hunter–gatherers, who competed with wolves for limited prey but also domesticated them, leading to a compensatory population expansion of dogs. We found extensive admixture between dogs and wolves, with up to 25% of Eurasian wolf genomes showing signs of dog ancestry. Dogs have influenced the recent history of wolves through admixture and vice versa, potentially enhancing adaptation. Simple scenarios of dog domestication are confounded by admixture, and studies that do not take admixture into account with specific demographic models are problematic. PMID:26680994

On Which Microphysical Time Scales to Use in Studies of Entrainment-Mixing Mechanisms in Clouds

DOE PAGES

Lu, Chunsong; Liu, Yangang; Zhu, Bin; ...

2018-03-23

The commonly used time scales in entrainment-mixing studies are examined in this paper to seek the most appropriate one, based on aircraft observations of cumulus clouds from the RACORO campaign and numerical simulations with the Explicit Mixing Parcel Model. The time scales include: τ evap, the time for droplet complete evaporation; τ phase, the time for saturation ratio deficit (S) to reach 1/e of its initial value; τ satu, the time for S to reach -0.5%; τ react, the time for complete droplet evaporation or S to reach -0.5%. It is found that the proper time scale to use dependsmore » on the specific objectives of entrainment-mixing studies. First, if the focus is on the variations of liquid water content (LWC) and S, then τ react for saturation, τ satu and τ phase are almost equivalently appropriate, because they all represent the rate of dry air reaching saturation or of LWC decrease. Second, if one focuses on the variations of droplet size and number concentration, τ react for complete evaporation and τ evap are proper because they characterize how fast droplets evaporate and whether number concentration decreases. Moreover, τ react for complete evaporation and τ evap are always positively correlated with homogeneous mixing degree (ψ), thus the two time scales, especially τ evap, are recommended for developing parameterizations. However, ψ and the other time scales can be negatively, positively, or not correlated, depending on the dominant factors of the entrained air (i.e., relative humidity or aerosols). Third and finally, all time scales are proportional to each other under certain microphysical and thermodynamic conditions.« less

On Which Microphysical Time Scales to Use in Studies of Entrainment-Mixing Mechanisms in Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, Chunsong; Liu, Yangang; Zhu, Bin

The commonly used time scales in entrainment-mixing studies are examined in this paper to seek the most appropriate one, based on aircraft observations of cumulus clouds from the RACORO campaign and numerical simulations with the Explicit Mixing Parcel Model. The time scales include: τ evap, the time for droplet complete evaporation; τ phase, the time for saturation ratio deficit (S) to reach 1/e of its initial value; τ satu, the time for S to reach -0.5%; τ react, the time for complete droplet evaporation or S to reach -0.5%. It is found that the proper time scale to use dependsmore » on the specific objectives of entrainment-mixing studies. First, if the focus is on the variations of liquid water content (LWC) and S, then τ react for saturation, τ satu and τ phase are almost equivalently appropriate, because they all represent the rate of dry air reaching saturation or of LWC decrease. Second, if one focuses on the variations of droplet size and number concentration, τ react for complete evaporation and τ evap are proper because they characterize how fast droplets evaporate and whether number concentration decreases. Moreover, τ react for complete evaporation and τ evap are always positively correlated with homogeneous mixing degree (ψ), thus the two time scales, especially τ evap, are recommended for developing parameterizations. However, ψ and the other time scales can be negatively, positively, or not correlated, depending on the dominant factors of the entrained air (i.e., relative humidity or aerosols). Third and finally, all time scales are proportional to each other under certain microphysical and thermodynamic conditions.« less

Entrainment and cloud evaporation deduced from the stable isotope chemistry of clouds during ORACLES

NASA Astrophysics Data System (ADS)

Noone, D.; Henze, D.; Rainwater, B.; Toohey, D. W.

2017-12-01

The magnitude of the influence of biomass burning aerosols on cloud and rain processes is controlled by a series of processes which are difficult to measure directly. A consequence of this limitation is the emergence of significant uncertainty in the representation of cloud-aerosol interactions in models and the resulting cloud radiative forcing. Interaction between cloud and the regional atmosphere causes evaporation, and the rate of evaporation at cloud top is controlled in part by entrainment of air from above which exposes saturated cloud air to drier conditions. Similarly, the size of cloud droplets also controls evaporation rates, which in turn is linked to the abundance of condensation nuclei. To quantify the dependence of cloud properties on biomass burning aerosols the dynamic relationship between evaporation, drop size and entrainment on aerosol state, is evaluated for stratiform clouds in the southeast Atlantic Ocean. These clouds are seasonally exposed to biomass burning plumes from agricultural fires in southern Africa. Measurements of the stable isotope ratios of cloud water and total water are used to deduce the disequilibrium responsible for evaporation within clouds. Disequilibrium is identified by the relationship between hydrogen and oxygen isotope ratios of water vapor and cloud water in and near clouds. To obtain the needed information, a custom-built, dual inlet system was deployed alongside isotopic gas analyzers on the NASA Orion aircraft as part of the Observations of Aerosols above Clouds and their Interactions (ORACLES) campaign. The sampling system obtains both total water and cloud liquid content for the population of droplets above 7 micrometer diameter. The thermodynamic modeling required to convert the observed equilibrium and kinetic isotopic is linked to evaporation and entrainment is described, and the performance of the measurement system is discussed.

Air void analyzer for plastic concrete.

DOT National Transportation Integrated Search

2008-10-01

The two main test methods that measure the air content in plastic concrete are the pressure method and the volumetric : or roll-a-meter method. Although these methods report the total air in the concrete, they do not distinguish between : entrained a...

Speech Entrainment Compensates for Broca's Area Damage

PubMed Central

Fridriksson, Julius; Basilakos, Alexandra; Hickok, Gregory; Bonilha, Leonardo; Rorden, Chris

2015-01-01

Speech entrainment (SE), the online mimicking of an audiovisual speech model, has been shown to increase speech fluency in patients with Broca's aphasia. However, not all individuals with aphasia benefit from SE. The purpose of this study was to identify patterns of cortical damage that predict a positive response SE's fluency-inducing effects. Forty-four chronic patients with left hemisphere stroke (15 female) were included in this study. Participants completed two tasks: 1) spontaneous speech production, and 2) audiovisual SE. Number of different words per minute was calculated as a speech output measure for each task, with the difference between SE and spontaneous speech conditions yielding a measure of fluency improvement. Voxel-wise lesion-symptom mapping (VLSM) was used to relate the number of different words per minute for spontaneous speech, SE, and SE-related improvement to patterns of brain damage in order to predict lesion locations associated with the fluency-inducing response to speech entrainment. Individuals with Broca's aphasia demonstrated a significant increase in different words per minute during speech entrainment versus spontaneous speech. A similar pattern of improvement was not seen in patients with other types of aphasia. VLSM analysis revealed damage to the inferior frontal gyrus predicted this response. Results suggest that SE exerts its fluency-inducing effects by providing a surrogate target for speech production via internal monitoring processes. Clinically, these results add further support for the use of speech entrainment to improve speech production and may help select patients for speech entrainment treatment. PMID:25989443

A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population

PubMed Central

Tashi, Tsewang; Lorenzo, Felipe Ramos; Feusier, Julie Ellen; Mir, Hyder

2016-01-01

The Kashmiri population is an ethno-linguistic group that resides in the Kashmir Valley in northern India. A longstanding hypothesis is that this population derives ancestry from Jewish and/or Greek sources. There is historical and archaeological evidence of ancient Greek presence in India and Kashmir. Further, some historical accounts suggest ancient Hebrew ancestry as well. To date, it has not been determined whether signatures of Greek or Jewish admixture can be detected in the Kashmiri population. Using genome-wide genotyping and admixture detection methods, we determined there are no significant or substantial signs of Greek or Jewish admixture in modern-day Kashmiris. The ancestry of Kashmiri Tibetans was also determined, which showed signs of admixture with populations from northern India and west Eurasia. These results contribute to our understanding of the existing population structure in northern India and its surrounding geographical areas. PMID:27490348

Retardation effect of different alcohols on the cement coagulation in polycarboxylate- and naphthalene-based cement admixtures

NASA Astrophysics Data System (ADS)

Huang, S. M.; Zhou, F. L.

2017-12-01

Alcohol has great potential to delay the coagulation of cement. The effects of alcohol on paste fluidity and normal consistency coagulation time have been studied for polycarboxylate superplasticizer and naphthene cement admixture. Seven alcohols were combined with polycarboxylate superplasticizer and naphthene at a concentration of 0.01-0.09%, respectively, including n-propanol, methanol, sorbitol, ethylene glycol, glycerol, ethanol, and mannitol. The fluidity and normal consistency coagulation time of each cement admixture were measured. The performance of both polycarboxylate superplasticizer and naphthene cement admixtures were compared to develop cement admixture with delayed coagulation.

Impact of entrainment on cloud droplet spectra: theory, observations, and modeling

NASA Astrophysics Data System (ADS)

Grabowski, W.

2016-12-01

Understanding the impact of entrainment and mixing on microphysical properties of warm boundary layer clouds is an important aspect of the representation of such clouds in large-scale models of weather and climate. Entrainment leads to a reduction of the liquid water content in agreement with the fundamental thermodynamics, but its impact on the droplet spectrum is difficult to quantify in observations and modeling. For in-situ (e.g., aircraft) observations, it is impossible to follow air parcels and observe processes that lead to changes of the droplet spectrum in different regions of a cloud. For similar reasons traditional modeling methodologies (e.g., the Eulerian large eddy simulation) are not useful either. Moreover, both observations and modeling can resolve only relatively narrow range of spatial scales. Theory, typically focusing on differences between idealized concepts of homogeneous and inhomogeneous mixing, is also of a limited use for the multiscale turbulent mixing between a cloud and its environment. This presentation will illustrate the above points and argue that the Lagrangian large-eddy simulation with appropriate subgrid-scale scheme may provide key insights and eventually lead to novel parameterizations for large-scale models.

Airborne observation of mixing across the entrainment zone during PARADE 2011

NASA Astrophysics Data System (ADS)

Berkes, Florian; Hoor, Peter; Bozem, Heiko; Kunkel, Daniel; Sprenger, Michael; Henne, Stephan

2016-05-01

This study presents the analysis of the structure and air mass characteristics of the lower atmosphere during the field campaign PARADE (PArticles and RAdicals: Diel observations of the impact of urban and biogenic Emissions) on Mount Kleiner Feldberg in southwestern Germany during late summer 2011. We analysed measurements of meteorological variables (temperature, moisture, pressure, wind speed and direction) from radio soundings and of chemical tracers (carbon dioxide, ozone) from aircraft measurements. We focus on the thermodynamic and dynamic properties that control the chemical distribution of atmospheric constituents in the boundary layer. We show that the evolution of tracer profiles of CO2 and O3 indicate mixing across the inversion layer (or entrainment zone). This finding is supported by the analysis of tracer-tracer correlations which are indicative for mixing and the relation of tracer profiles in relation to the evolution of the boundary layer height deduced from radio soundings. The study shows the relevance of entrainment processes for the lower troposphere in general and specifically that the tracer-tracer correlation method can be used to identify mixing and irreversible exchange processes across the inversion layer.

Viscous entrainment on hairy surfaces

NASA Astrophysics Data System (ADS)

Nasto, Alice; Brun, P.-T.; Hosoi, A. E.

2018-02-01

Nectar-drinking bats and honeybees have tongues covered with hairlike structures, enhancing their ability to take up viscous nectar by dipping. Using a combination of model experiments and theory, we explore the physical mechanisms that govern viscous entrainment in a hairy texture. Hairy surfaces are fabricated using laser cut molds and casting samples with polydimethylsiloxane (PDMS) elastomer. We model the liquid trapped within the texture using a Darcy-Brinkmann-like approach and derive the drainage flow solution. The amount of fluid that is entrained is dependent on the viscosity of the fluid, the density of the hairs, and the withdrawal speed. Both experiments and theory reveal an optimal hair density to maximize fluid uptake.

Admixture, Population Structure, and F-Statistics.

PubMed

Peter, Benjamin M

2016-04-01

Many questions about human genetic history can be addressed by examining the patterns of shared genetic variation between sets of populations. A useful methodological framework for this purpose isF-statistics that measure shared genetic drift between sets of two, three, and four populations and can be used to test simple and complex hypotheses about admixture between populations. This article provides context from phylogenetic and population genetic theory. I review how F-statistics can be interpreted as branch lengths or paths and derive new interpretations, using coalescent theory. I further show that the admixture tests can be interpreted as testing general properties of phylogenies, allowing extension of some ideas applications to arbitrary phylogenetic trees. The new results are used to investigate the behavior of the statistics under different models of population structure and show how population substructure complicates inference. The results lead to simplified estimators in many cases, and I recommend to replace F3 with the average number of pairwise differences for estimating population divergence. Copyright © 2016 by the Genetics Society of America.

Adsorption of superplasticizer admixtures on alkali-activated slag pastes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Palacios, M.; Houst, Y.F.; Bowen, P.

2009-08-15

Alkali-activated slag (AAS) binders are obtained by a manufacturing process less energy-intensive than ordinary Portland cement (OPC) and involves lower greenhouse gasses emission. These alkaline cements allow the production of high mechanical strength and durable concretes. In the present work, the adsorption of different superplasticizer admixtures (naphthalene-based, melamine-based and a vinyl copolymer) on the slag particles in AAS pastes using alkaline solutions with different pH values have been studied in detail. The effect of the superplasticizers on the yield stress and plastic viscosity of the AAS and OPC pastes have been also evaluated. The results obtained allowed us to concludemore » that the adsorption of the superplasticizers on AAS pastes is independent of the pH of the alkaline solutions used and lower than on OPC pastes. However, the effect of the admixtures on the rheological parameters depends directly on the type and dosage of the superplasticizer as well as of the binder used and, in the case of the AAS, on the pH of the alkaline activator solution. In 11.7-pH NaOH-AAS pastes the dosages of the superplasticizers required to attain similar reduction in the yield stress are ten-fold lower than for Portland cement. In this case the superplasticizers studied show a fluidizing effect considerably higher in 11.7-pH NaOH-AAS pastes than in OPC pastes. In 13.6-pH NaOH-AAS pastes, the only admixture observed to affect the rheological parameters is the naphthalene-based admixture due to its higher chemical stability in such extremely alkaline media.« less

Optical Properties of TGS Crystal with L-Valine Admixture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stadnyk, V. Yo., E-mail: vasylstadnyk@ukr.net; Romanyuk, N. A.; Kiryk, Yu. I.

2010-11-15

The thermal expansion and temperature and the spectral dependences of the refractive indices and birefringence of triglycine sulphate (TGS) crystals with a 5% L-valine admixture have been investigated. It is established that the introduction of L-valine weakens the temperature dependence of the refractive indices and the birefringence and thermal expansion of TGS crystals. The parameters of the Sellmeier formula, refractions, and electronic polarizabilities are calculated. The changes observed may be related to the increase in hardness of admixture-containing crystals, the decrease in the spontaneous polarization, the replacement of the refraction components of the valine bond, or the spontaneous electro-optic effect.

Experimental study of near-field entrainment of moderately overpressured jets

USGS Publications Warehouse

Solovitz, S.A.; Mastin, L.G.; Saffaraval, F.

2011-01-01

Particle image velocimetry (PIV) experiments have been conducted to study the velocity flow fields in the developing flow region of high-speed jets. These velocity distributions were examined to determine the entrained mass flow over a range of geometric and flow conditions, including overpressured cases up to an overpressure ratio of 2.83. In the region near the jet exit, all measured flows exhibited the same entrainment up until the location of the first shock when overpressured. Beyond this location, the entrainment was reduced with increasing overpressure ratio, falling to approximately 60 of the magnitudes seen when subsonic. Since entrainment ratios based on lower speed, subsonic results are typically used in one-dimensional volcanological models of plume development, the current analytical methods will underestimate the likelihood of column collapse. In addition, the concept of the entrainment ratio normalization is examined in detail, as several key assumptions in this methodology do not apply when overpressured.

Irregular Speech Rate Dissociates Auditory Cortical Entrainment, Evoked Responses, and Frontal Alpha

PubMed Central

Kayser, Stephanie J.; Ince, Robin A.A.; Gross, Joachim

2015-01-01

The entrainment of slow rhythmic auditory cortical activity to the temporal regularities in speech is considered to be a central mechanism underlying auditory perception. Previous work has shown that entrainment is reduced when the quality of the acoustic input is degraded, but has also linked rhythmic activity at similar time scales to the encoding of temporal expectations. To understand these bottom-up and top-down contributions to rhythmic entrainment, we manipulated the temporal predictive structure of speech by parametrically altering the distribution of pauses between syllables or words, thereby rendering the local speech rate irregular while preserving intelligibility and the envelope fluctuations of the acoustic signal. Recording EEG activity in human participants, we found that this manipulation did not alter neural processes reflecting the encoding of individual sound transients, such as evoked potentials. However, the manipulation significantly reduced the fidelity of auditory delta (but not theta) band entrainment to the speech envelope. It also reduced left frontal alpha power and this alpha reduction was predictive of the reduced delta entrainment across participants. Our results show that rhythmic auditory entrainment in delta and theta bands reflect functionally distinct processes. Furthermore, they reveal that delta entrainment is under top-down control and likely reflects prefrontal processes that are sensitive to acoustical regularities rather than the bottom-up encoding of acoustic features. SIGNIFICANCE STATEMENT The entrainment of rhythmic auditory cortical activity to the speech envelope is considered to be critical for hearing. Previous work has proposed divergent views in which entrainment reflects either early evoked responses related to sound encoding or high-level processes related to expectation or cognitive selection. Using a manipulation of speech rate, we dissociated auditory entrainment at different time scales. Specifically, our

Complex Patterns of Admixture across the Indonesian Archipelago

PubMed Central

Hudjashov, Georgi; Karafet, Tatiana M.; Lawson, Daniel J.; Downey, Sean; Savina, Olga; Sudoyo, Herawati; Lansing, J. Stephen; Hammer, Michael F.; Cox, Murray P.

2017-01-01

Abstract Indonesia, an island nation as large as continental Europe, hosts a sizeable proportion of global human diversity, yet remains surprisingly undercharacterized genetically. Here, we substantially expand on existing studies by reporting genome-scale data for nearly 500 individuals from 25 populations in Island Southeast Asia, New Guinea, and Oceania, notably including previously unsampled islands across the Indonesian archipelago. We use high-resolution analyses of haplotype diversity to reveal fine detail of regional admixture patterns, with a particular focus on the Holocene. We find that recent population history within Indonesia is complex, and that populations from the Philippines made important genetic contributions in the early phases of the Austronesian expansion. Different, but interrelated processes, acted in the east and west. The Austronesian migration took several centuries to spread across the eastern part of the archipelago, where genetic admixture postdates the archeological signal. As with the Neolithic expansion further east in Oceania and in Europe, genetic mixing with local inhabitants in eastern Indonesia lagged behind the arrival of farming populations. In contrast, western Indonesia has a more complicated admixture history shaped by interactions with mainland Asian and Austronesian newcomers, which for some populations occurred more than once. Another layer of complexity in the west was introduced by genetic contact with South Asia and strong demographic events in isolated local groups. PMID:28957506

Tuning Neural Phase Entrainment to Speech.

PubMed

Falk, Simone; Lanzilotti, Cosima; Schön, Daniele

2017-08-01

Musical rhythm positively impacts on subsequent speech processing. However, the neural mechanisms underlying this phenomenon are so far unclear. We investigated whether carryover effects from a preceding musical cue to a speech stimulus result from a continuation of neural phase entrainment to periodicities that are present in both music and speech. Participants listened and memorized French metrical sentences that contained (quasi-)periodic recurrences of accents and syllables. Speech stimuli were preceded by a rhythmically regular or irregular musical cue. Our results show that the presence of a regular cue modulates neural response as estimated by EEG power spectral density, intertrial coherence, and source analyses at critical frequencies during speech processing compared with the irregular condition. Importantly, intertrial coherences for regular cues were indicative of the participants' success in memorizing the subsequent speech stimuli. These findings underscore the highly adaptive nature of neural phase entrainment across fundamentally different auditory stimuli. They also support current models of neural phase entrainment as a tool of predictive timing and attentional selection across cognitive domains.

Sensory Entrainment Mechanisms in Auditory Perception: Neural Synchronization Cortico-Striatal Activation.

PubMed

Sameiro-Barbosa, Catia M; Geiser, Eveline

2016-01-01

The auditory system displays modulations in sensitivity that can align with the temporal structure of the acoustic environment. This sensory entrainment can facilitate sensory perception and is particularly relevant for audition. Systems neuroscience is slowly uncovering the neural mechanisms underlying the behaviorally observed sensory entrainment effects in the human sensory system. The present article summarizes the prominent behavioral effects of sensory entrainment and reviews our current understanding of the neural basis of sensory entrainment, such as synchronized neural oscillations, and potentially, neural activation in the cortico-striatal system.

Drop impact on a solid surface at reduced air pressure

NASA Astrophysics Data System (ADS)

Langley, Kenneth; Li, E. Q.; Tian, Y. S.; Hicks, P. D.; Thoroddsen, S. T.

2017-11-01

When a drop approaches a solid surface at atmospheric pressure, the lubrication pressure within the air forms a dimple in the bottom of the drop resulting in the entrainment of an air disc upon impact. Reducing the ambient air pressure below atmospheric has been shown to suppress splashing and the compression of the intervening air could be significant on the air disc formation; however, to date there have been no experimental studies showing how the entrainment of the air disc is affected by reducing the ambient pressure. Using ultra-high-speed interferometry, at up to 5 Mfps, we investigate droplet impacts onto dry solid surfaces in reduced ambient air pressures with particular interest in what happens as rarified gas effects become important, i.e. when the thickness of the air layer is of the same magnitude as the mean free path of the air molecules. Experimental data will be presented showing novel phenomena and comparisons will be drawn with theoretical models from the literature.

Evaluation of physical stability of all in one parenteral admixtures for pediatric home care with high electrolytes concentrations.

PubMed

Watrobska-Swietlikowska, Dorota; Szlagatys-Sidorkiewicz, Agnieszka; Łuszkiewicz, Katarzyna

2014-01-01

The aim of the study was to evaluate stability of 48 total parenteral admixtures for pediatric patients who require home parenteral nutrition. Admixtures contain high amounts of electrolytes. In a clinical practice electrolytes-enrichment of the parenteral nutrition admixtures is a usual demand, especially on the neonatal/pediatric wards. The supplementation of parenteral nutrition with high concentration of electrolytes is a living problem due to decreased stability of lipid emulsions in nutrition admixtures caused by bivalent cations. Preliminary admixtures were prepared in two-chamber ethylene vinyl acetate bags: amino acids, glucose and electrolytes were combined in one chamber and 20% (w/w) lipid emulsions (SMOFlipid®, Intralipid ® or ClinOleic®) were placed separately in the second chamber. Organic salts of calcium and phosphates were used. Pre-admixtures were stored at +4ºC for up to 21 days after preparation. Each composition of admixtures was prepared twice, because contents of the two chambers were combined at t=0 or after 21 days of storage at +4ºC. Visual observations, globule size distribution (using optical microscopy, laser diffraction and photon correlation spectroscopy methods), pH analyses, zeta potential and surface tension were performed after combining all components together with vitamins. Among 48 of investigated admixtures only two were problematic and other may be stored for at least 21 days at 4°C and completed admixtures demonstrated stability for at least 24 h at room temperature. It was possible to obtain stable admixtures despite of the high concentration of electrolytes. Copyright AULA MEDICA EDICIONES 2014. Published by AULA MEDICA. All rights reserved.

Modeling of neutral entrainment in an FRC thruster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brackbill, Jeremiah; Gimelshein, Natalia; Gimelshein, Sergey

2012-11-27

Neutral entrainment in a field reversed configuration thruster is modeled numerically with an implicit PIC code extended to include thermal and chemical interactions between plasma and neutral particles. The contribution of charge exchange and electron impact ionization reactions is analyzed, and the sensitivity of the entrainment efficiency to the plasmoid translation velocity and neutral density is evaluated.

Numerical investigation of slag formation in an entrained-flow gasifier

NASA Astrophysics Data System (ADS)

Zageris, G.; Geza, V.; Jakovics, A.

2018-05-01

A CFD mathematical model for an entrained-flow gasifier is constructed – the model of an actual gasifier is rendered in 3D and appropriately meshed. Then, the turbulent gas flow in the gasifier is modeled with the realizable k-ε approach, taking devolatilization, combustion and coal gasification in account. Various such simulations are conducted, obtaining results for different air inlet positions and by tracking particles of varying sizes undergoing devolatilization and gasification. The model identifies potential problematic zones where most particles collide with the gasifier walls, indicating risk regions where ash deposits could most likely form. In conclusion, effects on the formation of an ash layer of air inlet positioning and particle size allowed in the main gasifier tank are discussed, and viable solutions such as radial inlet positioning for decreasing the amount of undesirable deposits are proposed. We also conclude that the particular chemical reactions that take place inside the gasifier play a significant role in determining how slagging occurs inside a gasifier.

The contributions of admixture and genetic drift to diversity among post-contact populations in the Americas.

PubMed

Koehl, Anthony J; Long, Jeffrey C

2018-02-01

We present a model that partitions Nei's minimum genetic distance between admixed populations into components of admixture and genetic drift. We applied this model to 17 admixed populations in the Americas to examine how admixture and drift have contributed to the patterns of genetic diversity. We analyzed 618 short tandem repeat loci in 949 individuals from 49 population samples. Thirty-two samples serve as proxies for continental ancestors. Seventeen samples represent admixed populations: (4) African-American and (13) Latin American. We partition genetic distance, and then calculate fixation indices and principal coordinates to interpret our results. A computer simulation confirms that our method correctly estimates drift and admixture components of genetic distance when the assumptions of the model are met. The partition of genetic distance shows that both admixture and genetic drift contribute to patterns of genetic diversity. The admixture component of genetic distance provides evidence for two distinct axes of continental ancestry. However, the genetic distances show that ancestry contributes to only one axis of genetic differentiation. The genetic distances among the 13 Latin American populations in this analysis show contributions from both differences in ancestry and differences in genetic drift. By contrast, the genetic distances among the four African American populations in this analysis owe mostly to genetic drift because these groups have similar fractions of European and African ancestry. The genetic structure of admixed populations in the Americas reflects more than admixture. We show that the history of serial founder effects constrains the impact of admixture on allele frequencies to a single dimension. Genetic drift in the admixed populations imposed a new level of genetic structure onto that created by admixture. © 2017 Wiley Periodicals, Inc.

Elementary theory of bed-sediment entrainment by debris flows and avalanches

USGS Publications Warehouse

Iverson, Richard M.

2012-01-01

Analyses of mass and momentum exchange between a debris flow or avalanche and an underlying sediment layer aid interpretations and predictions of bed-sediment entrainment rates. A preliminary analysis assesses the behavior of a Coulomb slide block that entrains bed material as it descends a uniform slope. The analysis demonstrates that the block's momentum can grow unstably, even in the presence of limited entrainment efficiency. A more-detailed, depth-integrated continuum analysis of interacting, deformable bodies identifies mechanical controls on entrainment efficiency, and shows that entrainment rates satisfy a jump condition that involves shear-traction and velocity discontinuities at the flow-bed boundary. Explicit predictions of the entrainment rateEresult from making reasonable assumptions about flow velocity profiles and boundary shear tractions. For Coulomb-friction tractions, predicted entrainment rates are sensitive to pore fluid pressures that develop in bed sediment as it is overridden. In the simplest scenario the bed sediment liquefies completely, and the entrainment-rate equation reduces toE = 2μ1gh1 cos θ(1 − λ1)/ , where θ is the slope angle, μ1 is the flow's Coulomb friction coefficient, h1 is its thickness, λ1 is its degree of liquefaction, and is its depth-averaged velocity. For values ofλ1ranging from 0.5 to 0.8, this equation predicts entrainment rates consistent with rates of 0.05 to 0.1 m/s measured in large-scale debris-flow experiments in which wet sediment beds liquefied almost completely. The propensity for bed liquefaction depends on several factors, including sediment porosity, permeability, and thickness, and rates of compression and shear deformation that occur when beds are overridden.

Analysis of Genomic Admixture in Uyghur and Its Implication in Mapping Strategy

PubMed Central

Xu, Shuhua; Huang, Wei; Qian, Ji; Jin, Li

2008-01-01

The Uyghur (UIG) population, settled in Xinjiang, China, is a population presenting a typical admixture of Eastern and Western anthropometric traits. We dissected its genomic structure at population level, individual level, and chromosome level by using 20,177 SNPs spanning nearly the entire chromosome 21. Our results showed that UIG was formed by two-way admixture, with 60% European ancestry and 40% East Asian ancestry. Overall linkage disequilibrium (LD) in UIG was similar to that in its parental populations represented in East Asia and Europe with regard to common alleles, and UIG manifested elevation of LD only within 500 kb and at a level of 0.1 < r2 < 0.8 when ancestry-informative markers (AIMs) were used. The size of chromosomal segments that were derived from East Asian and European ancestries averaged 2.4 cM and 4.1 cM, respectively. Both the magnitude of LD and fragmentary ancestral chromosome segments indicated a long history of Uyghur. Under the assumption of a hybrid isolation (HI) model, we estimated that the admixture event of UIG occurred about 126 [107∼146] generations ago, or 2520 [2140∼2920] years ago assuming 20 years per generation. In spite of the long history and short LD of Uyghur compared with recent admixture populations such as the African-American population, we suggest that mapping by admixture LD (MALD) is still applicable in the Uyghur population but ∼10-fold AIMs are necessary for a whole-genome scan. PMID:18355773

Effects of open-air temperature on air temperature inside biological safety cabinet.

PubMed

Umemura, Masayuki; Shigeno, Katsuro; Yamamura, Keiko; Osada, Takashi; Soda, Midori; Yamada, Kiyofumi; Ando, Yuichi; Wakiya, Yoshifumi

2011-02-14

In Japan, biological safety cabinets (BSCs) are normally used by medical staff while handling antineoplastic agents. We have also set up a class II B2 BSC at the Division of Chemotherapy for Outpatients. The air temperature inside this BSC, however, decreases in winter. We assumed that this decrease is caused by the intake of open-air. Therefore, we investigated the effects of low open-air temperature on the BSC temperature and the time of admixtures of antineoplastic agents. The studies were conducted from January 1 to March 31, 2008. The outdoor air temperature was measured in the shade near the intake nozzle of the BSC and was compared with the BSC temperature. The correlation between the outdoor air temperature and the BSC temperature, the dissolution time of cyclophosphamide (CPA) and gemcitabine (GEM), and accurate weight measurement of epirubicin (EPI) solution were investigated for low and normal BSC temperatures. The BSC temperature was correlated with the open-air temperature for open-air temperatures of 5-20°C (p < 0.0001). The dissolution of CPA and GEM at these temperatures was significantly delayed as compared to that at 25°C (p < 0.01 and p < 0.0001, respectively). The weight measurement of EPI solution using a syringe method lacks accuracy because of its high coefficient of viscosity at low temperatures (p < 0.01). These results suggest that the BSC temperature decreases below room temperature in winter when air is drawn from outdoors. We showed that the BSC temperature affects the dissolution rate of antineoplastic agents. Further, we suggested that the BSC temperature drop might delay the affair of the admixtures of antineoplastic agents and increase the waiting time of outpatients for chemotherapy.

Exploring Population Admixture Dynamics via Empirical and Simulated Genome-wide Distribution of Ancestral Chromosomal Segments

PubMed Central

Jin, Wenfei; Wang, Sijia; Wang, Haifeng; Jin, Li; Xu, Shuhua

2012-01-01

The processes of genetic admixture determine the haplotype structure and linkage disequilibrium patterns of the admixed population, which is important for medical and evolutionary studies. However, most previous studies do not consider the inherent complexity of admixture processes. Here we proposed two approaches to explore population admixture dynamics, and we demonstrated, by analyzing genome-wide empirical and simulated data, that the approach based on the distribution of chromosomal segments of distinct ancestry (CSDAs) was more powerful than that based on the distribution of individual ancestry proportions. Analysis of 1,890 African Americans showed that a continuous gene flow model, in which the African American population continuously received gene flow from European populations over about 14 generations, best explained the admixture dynamics of African Americans among several putative models. Interestingly, we observed that some African Americans had much more European ancestry than the simulated samples, indicating substructures of local ancestries in African Americans that could have been caused by individuals from some particular lineages having repeatedly admixed with people of European ancestry. In contrast, the admixture dynamics of Mexicans could be explained by a gradual admixture model in which the Mexican population continuously received gene flow from both European and Amerindian populations over about 24 generations. Our results also indicated that recent gene flows from Sub-Saharan Africans have contributed to the gene pool of Middle Eastern populations such as Mozabite, Bedouin, and Palestinian. In summary, this study not only provides approaches to explore population admixture dynamics, but also advances our understanding on population history of African Americans, Mexicans, and Middle Eastern populations. PMID:23103229

Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture

PubMed Central

Pool, John E.; Corbett-Detig, Russell B.; Sugino, Ryuichi P.; Stevens, Kristian A.; Cardeno, Charis M.; Crepeau, Marc W.; Duchen, Pablo; Emerson, J. J.; Saelao, Perot; Begun, David J.; Langley, Charles H.

2012-01-01

Drosophila melanogaster has played a pivotal role in the development of modern population genetics. However, many basic questions regarding the demographic and adaptive history of this species remain unresolved. We report the genome sequencing of 139 wild-derived strains of D. melanogaster, representing 22 population samples from the sub-Saharan ancestral range of this species, along with one European population. Most genomes were sequenced above 25X depth from haploid embryos. Results indicated a pervasive influence of non-African admixture in many African populations, motivating the development and application of a novel admixture detection method. Admixture proportions varied among populations, with greater admixture in urban locations. Admixture levels also varied across the genome, with localized peaks and valleys suggestive of a non-neutral introgression process. Genomes from the same location differed starkly in ancestry, suggesting that isolation mechanisms may exist within African populations. After removing putatively admixed genomic segments, the greatest genetic diversity was observed in southern Africa (e.g. Zambia), while diversity in other populations was largely consistent with a geographic expansion from this potentially ancestral region. The European population showed different levels of diversity reduction on each chromosome arm, and some African populations displayed chromosome arm-specific diversity reductions. Inversions in the European sample were associated with strong elevations in diversity across chromosome arms. Genomic scans were conducted to identify loci that may represent targets of positive selection within an African population, between African populations, and between European and African populations. A disproportionate number of candidate selective sweep regions were located near genes with varied roles in gene regulation. Outliers for Europe-Africa FST were found to be enriched in genomic regions of locally elevated cosmopolitan

Entrainment of spontaneously hypertensive rat fibroblasts by temperature cycles.

PubMed

Sládek, Martin; Sumová, Alena

2013-01-01

The functional state of the circadian system of spontaneously hypertensive rats (SHR) differs in several characteristics from the functional state of normotensive Wistar rats. Some of these changes might be due to the compromised ability of the central pacemaker to entrain the peripheral clocks. Daily body temperature cycles represent one of the important cues responsible for the integrity of the circadian system, because these cycles are driven by the central pacemaker and are able to entrain the peripheral clocks. This study tested the hypothesis that the aberrant peripheral clock entrainment of SHR results from a compromised peripheral clock sensitivity to the daily temperature cycle resetting. Using cultured Wistar rat and SHR fibroblasts transfected with the circadian luminescence reporter Bmal1-dLuc, we demonstrated that two consecutive square-wave temperature cycles with amplitudes of 2.5 °C are necessary and sufficient to restart the dampened oscillations and entrain the circadian clocks in both Wistar rat and SHR fibroblasts. We also generated a phase response curve to temperature cycles for fibroblasts of both rat strains. Although some of the data suggested a slight resistance of SHR fibroblasts to temperature entrainment, we concluded that the overall effect it too weak to be responsible for the differences between the SHR and Wistar in vivo circadian phenotype.

African and Non-African Admixture Components in African Americans and An African Caribbean Population

PubMed Central

Murray, Tanda; Beaty, Terri H.; Mathias, Rasika A.; Rafaels, Nicholas; Grant, Audrey Virginia; Faruque, Mezbah U.; Watson, Harold R.; Ruczinski, Ingo; Dunston, Georgia M.; Barnes, Kathleen C.

2013-01-01

Admixture is a potential source of confounding in genetic association studies, so it becomes important to detect and estimate admixture in a sample of unrelated individuals. Populations of African descent in the US and the Caribbean share similar historical backgrounds but the distributions of African admixture may differ. We selected 416 ancestry informative markers (AIMs) to estimate and compare admixture proportions using STRUCTURE in 906 unrelated African Americans (AAs) and 294 Barbadians (ACs) from a study of asthma. This analysis showed AAs on average were 72.5% African, 19.6% European and 8% Asian, while ACs were 77.4% African, 15.9% European, and 6.7% Asian which were significantly different. A principal components analysis based on these AIMs yielded one primary eigenvector that explained 54.04% of the variation and captured a gradient from West African to European admixture. This principal component was highly correlated with African vs. European ancestry as estimated by STRUCTURE (r2 = 0.992, r2 = 0.912, respectively). To investigate other African contributions to African American and Barbadian admixture, we performed PCA on ~14,000 (14k) genome-wide SNPs in AAs, ACs, Yorubans, Luhya and Maasai African groups, and estimated genetic distances (FST). We found AAs and ACs were closest genetically (FST = 0.008), and both were closer to the Yorubans than the other East African populations. In our sample of individuals of African descent, ~400 well-defined AIMs were just as good for detecting substructure as ~14,000 random SNPs drawn from a genome-wide panel of markers. PMID:20717976

Effect of a viscoelastic admixture on transient vibration in a concrete and steel floor

NASA Astrophysics Data System (ADS)

Moiseev, Neil

1992-02-01

The typical concrete and steel building structure has very little inherent damping, resulting in a very large Q, a measure of the sharpness of the amplitude response at resonance. Some damping effects are provided through the inertia and friction provided by a building''s full height partitions, hung ceilings, furniture, and suspended ducts and piping. These items have an effect on the very low amplitude vibration that affects sensitive laboratory equipment and the processes used in the microelectronic industry. This paper presents studies of transient vibration of floors in two existing buildings. The floors have been treated by adding a two inch thick concrete topping to the structural floor. This additional layer of concrete was treated by using a viscoelastic damping admixture in place of some of the water used to form the concrete. The admixture can dramatically reduce the Q of concrete from the normal 200 to between 20 and 50, depending on the amount of admixture used per yard of concrete. The measured velocity and frequency of the transient vibration excited by footfalls is compared to the predicted velocity and frequency of the same floor structure without the damping admixture. A formula to predict the peak transient vibration velocity due to footfalls for a concrete floor with a viscoelastic admixture is proposed.

Review Article: Advances in modeling of bed particle entrainment sheared by turbulent flow

NASA Astrophysics Data System (ADS)

Dey, Subhasish; Ali, Sk Zeeshan

2018-06-01

Bed particle entrainment by turbulent wall-shear flow is a key topic of interest in hydrodynamics because it plays a major role to govern the planetary morphodynamics. In this paper, the state-of-the-art review of the essential mechanisms governing the bed particle entrainment by turbulent wall-shear flow and their mathematical modeling is presented. The paper starts with the appraisal of the earlier multifaceted ideas in modeling the particle entrainment highlighting the rolling, sliding, and lifting modes of entrainment. Then, various modeling approaches of bed particle entrainment, such as deterministic, stochastic, and spatiotemporal approaches, are critically analyzed. The modeling criteria of particle entrainment are distinguished for hydraulically smooth, transitional, and rough flow regimes. In this context, the responses of particle size, particle exposure, and packing condition to the near-bed turbulent flow that shears the particles to entrain are discussed. From the modern experimental outcomes, the conceptual mechanism of particle entrainment from the viewpoint of near-bed turbulent coherent structures is delineated. As the latest advancement of the subject, the paper sheds light on the origin of the primitive empirical formulations of bed particle entrainment deriving the scaling laws of threshold flow velocity of bed particle motion from the perspective of the phenomenological theory of turbulence. Besides, a model framework that provides a new look on the bed particle entrainment phenomenon stemming from the stochastic-cum-spatiotemporal approach is introduced. Finally, the future scope of research is articulated with open questions.

EEG oscillations entrain their phase to high-level features of speech sound.

PubMed

Zoefel, Benedikt; VanRullen, Rufin

2016-01-01

Phase entrainment of neural oscillations, the brain's adjustment to rhythmic stimulation, is a central component in recent theories of speech comprehension: the alignment between brain oscillations and speech sound improves speech intelligibility. However, phase entrainment to everyday speech sound could also be explained by oscillations passively following the low-level periodicities (e.g., in sound amplitude and spectral content) of auditory stimulation-and not by an adjustment to the speech rhythm per se. Recently, using novel speech/noise mixture stimuli, we have shown that behavioral performance can entrain to speech sound even when high-level features (including phonetic information) are not accompanied by fluctuations in sound amplitude and spectral content. In the present study, we report that neural phase entrainment might underlie our behavioral findings. We observed phase-locking between electroencephalogram (EEG) and speech sound in response not only to original (unprocessed) speech but also to our constructed "high-level" speech/noise mixture stimuli. Phase entrainment to original speech and speech/noise sound did not differ in the degree of entrainment, but rather in the actual phase difference between EEG signal and sound. Phase entrainment was not abolished when speech/noise stimuli were presented in reverse (which disrupts semantic processing), indicating that acoustic (rather than linguistic) high-level features play a major role in the observed neural entrainment. Our results provide further evidence for phase entrainment as a potential mechanism underlying speech processing and segmentation, and for the involvement of high-level processes in the adjustment to the rhythm of speech. Copyright © 2015 Elsevier Inc. All rights reserved.

Complex Patterns of Admixture across the Indonesian Archipelago.

PubMed

Hudjashov, Georgi; Karafet, Tatiana M; Lawson, Daniel J; Downey, Sean; Savina, Olga; Sudoyo, Herawati; Lansing, J Stephen; Hammer, Michael F; Cox, Murray P

2017-10-01

Indonesia, an island nation as large as continental Europe, hosts a sizeable proportion of global human diversity, yet remains surprisingly undercharacterized genetically. Here, we substantially expand on existing studies by reporting genome-scale data for nearly 500 individuals from 25 populations in Island Southeast Asia, New Guinea, and Oceania, notably including previously unsampled islands across the Indonesian archipelago. We use high-resolution analyses of haplotype diversity to reveal fine detail of regional admixture patterns, with a particular focus on the Holocene. We find that recent population history within Indonesia is complex, and that populations from the Philippines made important genetic contributions in the early phases of the Austronesian expansion. Different, but interrelated processes, acted in the east and west. The Austronesian migration took several centuries to spread across the eastern part of the archipelago, where genetic admixture postdates the archeological signal. As with the Neolithic expansion further east in Oceania and in Europe, genetic mixing with local inhabitants in eastern Indonesia lagged behind the arrival of farming populations. In contrast, western Indonesia has a more complicated admixture history shaped by interactions with mainland Asian and Austronesian newcomers, which for some populations occurred more than once. Another layer of complexity in the west was introduced by genetic contact with South Asia and strong demographic events in isolated local groups. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

No Time To Kill: Entrainment and Accelerating Courseware Development.

ERIC Educational Resources Information Center

Millington, Paula Crnkovich

This paper examines the concept of time in multimedia, World Wide Web-based courseware development. The biological concept of entrainment (the alignment of rhythms within and between systems) to accelerate courseware development is explored. The discussion begins with the foundational concepts of entrainment from biological systems and social…

Admixture enhanced controlled low-strength material for direct underwater injection with minimal cross-contamination

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hepworth, H.K.; Davidson, J.S.; Hooyman, J.L.

1997-03-01

Commercially available admixtures have been developed for placing traditional concrete products under water. This paper evaluates adapting anti-washout admixture (AWA) and high range water reducing admixture (HRWRA) products to enhance controlled low-strength materials (CLSMs) for underwater placement. A simple experimental scale model (based on dynamic and geometric similitude) of typical grout pump emplacement equipment has been developed to determine the percentage of cementing material washed out. The objective of this study was to identify proportions of admixtures and underwater CLSM emplacement procedures which would minimize the cross-contamination of the displaced water while maintaining the advantages of CLSM. Since the displacedmore » water from radioactively contaminated systems must be subsequently treated prior to release to the environment, the amount of cross-contamination is important for cases in which cementing material could form hard sludges in a water treatment facility and contaminate the in-place CLSM stabilization medium.« less

Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA

NASA Astrophysics Data System (ADS)

Bercovici, Sivan; Geiger, Dan

Admixture mapping is a gene mapping approach used for the identification of genomic regions harboring disease susceptibility genes in the case of recently admixed populations such as African Americans. We present a novel method for admixture mapping, called admixture aberration analysis (AAA), that uses a DNA pool of affected admixed individuals. We demonstrate through simulations that AAA is a powerful and economical mapping method under a range of scenarios, capturing complex human diseases such as hypertension and end stage kidney disease. The method has a low false-positive rate and is robust to deviation from model assumptions. Finally, we apply AAA on 600 prostate cancer-affected African Americans, replicating a known risk locus. Simulation results indicate that the method can yield over 96% reduction in genotyping. Our method is implemented as a Java program called AAAmap and is freely available.

Early age strength increase of fly ash blended cement by a ternary hardening accelerating admixture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoang, Kien; Justnes, Harald; SINTEF Building and Infrastructure

The applicability of a combination of sodium thiocyanate (NaSCN), diethanolamine (DEA) and glycerol (Gly) with small dosages as a ternary hardening accelerating admixture for fly ash blended cement (OPC-FA) was studied. The ternary admixture induced higher early and later age mortar strength at both low (5 °C) and normal (20 °C) temperature. Despite used in lower dosage the ternary admixture led to higher strength of the investigated OPC-FA system than other chemicals (e.g. sodium sulfate). Results obtained from isothermal calorimetry, thermogravimetric analysis (TGA) and X-ray diffraction (XRD) showed that the ternary admixture accelerated the cement hydration and increased the amountmore » of AFm (notably calcium hemicarboaluminate hydrate) in the hydration products. A synergistic effect between the three components of the accelerator on the hydration of OPC-FA system was observed.« less

Entrainment of Spontaneously Hypertensive Rat Fibroblasts by Temperature Cycles

PubMed Central

Sládek, Martin; Sumová, Alena

2013-01-01

The functional state of the circadian system of spontaneously hypertensive rats (SHR) differs in several characteristics from the functional state of normotensive Wistar rats. Some of these changes might be due to the compromised ability of the central pacemaker to entrain the peripheral clocks. Daily body temperature cycles represent one of the important cues responsible for the integrity of the circadian system, because these cycles are driven by the central pacemaker and are able to entrain the peripheral clocks. This study tested the hypothesis that the aberrant peripheral clock entrainment of SHR results from a compromised peripheral clock sensitivity to the daily temperature cycle resetting. Using cultured Wistar rat and SHR fibroblasts transfected with the circadian luminescence reporter Bmal1-dLuc, we demonstrated that two consecutive square-wave temperature cycles with amplitudes of 2.5°C are necessary and sufficient to restart the dampened oscillations and entrain the circadian clocks in both Wistar rat and SHR fibroblasts. We also generated a phase response curve to temperature cycles for fibroblasts of both rat strains. Although some of the data suggested a slight resistance of SHR fibroblasts to temperature entrainment, we concluded that the overall effect it too weak to be responsible for the differences between the SHR and Wistar in vivo circadian phenotype. PMID:24116198

Reduced bleed air extraction for DC-10 cabin air conditioning

NASA Technical Reports Server (NTRS)

Newman, W. H.; Viele, M. R.; Hrach, F. J.

1980-01-01

It is noted that a significant fuel savings can be achieved by reducing bleed air used for cabin air conditioning. Air in the cabin can be recirculated to maintain comfortable ventilation rates but the quality of the air tends to decrease due to entrainment of smoke and odors. Attention is given to a development system designed and fabricated under the NASA Engine Component Improvement Program to define the recirculation limit for the DC-10. It is shown that with the system, a wide range of bleed air reductions and recirculation rates is possible. A goal of 0.8% fuel savings has been achieved which results from a 50% reduction in bleed extraction from the engine.

Entrainment of a Bacterial Synthetic Gene Oscillator through Proteolytic Queueing.

PubMed

Butzin, Nicholas C; Hochendoner, Philip; Ogle, Curtis T; Mather, William H

2017-03-17

Internal chemical oscillators (chemical clocks) direct the behavior of numerous biological systems, and maintenance of a given period and phase among many such oscillators may be important for their proper function. However, both environmental variability and fundamental molecular noise can cause biochemical oscillators to lose coherence. One solution to maintaining coherence is entrainment, where an external signal provides a cue that resets the phase of the oscillators. In this work, we study the entrainment of gene networks by a queueing interaction established by competition between proteins for a common proteolytic pathway. Principles of queueing entrainment are investigated for an established synthetic oscillator in Escherichia coli. We first explore this theoretically using a standard chemical reaction network model and a map-based model, both of which suggest that queueing entrainment can be achieved through pulsatile production of an additional protein competing for a common degradation pathway with the oscillator proteins. We then use a combination of microfluidics and fluorescence microscopy to verify that pulse trains modulating the production rate of a fluorescent protein targeted to the same protease (ClpXP) as the synthetic oscillator can entrain the oscillator.

The neural basis of audiomotor entrainment: an ALE meta-analysis

PubMed Central

Chauvigné, Léa A. S.; Gitau, Kevin M.; Brown, Steven

2014-01-01

Synchronization of body movement to an acoustic rhythm is a major form of entrainment, such as occurs in dance. This is exemplified in experimental studies of finger tapping. Entrainment to a beat is contrasted with movement that is internally driven and is therefore self-paced. In order to examine brain areas important for entrainment to an acoustic beat, we meta-analyzed the functional neuroimaging literature on finger tapping (43 studies) using activation likelihood estimation (ALE) meta-analysis with a focus on the contrast between externally-paced and self-paced tapping. The results demonstrated a dissociation between two subcortical systems involved in timing, namely the cerebellum and the basal ganglia. Externally-paced tapping highlighted the importance of the spinocerebellum, most especially the vermis, which was not activated at all by self-paced tapping. In contrast, the basal ganglia, including the putamen and globus pallidus, were active during both types of tapping, but preferentially during self-paced tapping. These results suggest a central role for the spinocerebellum in audiomotor entrainment. We conclude with a theoretical discussion about the various forms of entrainment in humans and other animals. PMID:25324765

A study on the entrainment and mixing process in the continental stratocumulus clouds measured during the RACORO campaign

DOE PAGES

Yeom, Jae Min; Yum, Seong Soo; Liu, Yangang; ...

2017-04-20

Entrainment and mixing processes and their effects on cloud microphysics in the continental stratocumulus clouds observed in Oklahoma during the RACORO campaign are analyzed in the frame of homogeneous and inhomogeneous mixing concepts by combining the approaches of microphysical correlation, mixing diagram, and transition scale (number). A total of 110 horizontally penetrated cloud segments is analyzed in this paper. Mixing diagram and cloud microphysical relationship analyses show homogeneous mixing trait of positive relationship between liquid water content (L) and mean volume of droplets (V) (i.e., smaller droplets in more diluted parcel) in most cloud segments. Relatively small temperature and humiditymore » differences between the entraining air from above the cloud top and cloudy air and relatively large turbulent dissipation rate are found to be responsible for this finding. The related scale parameters (i.e., transition length and transition scale number) are relatively large, which also indicates high likelihood of homogeneous mixing. Finally, clear positive relationship between L and vertical velocity (W) for some cloud segments is suggested to be evidence of vertical circulation mixing, which may further enhance the positive relationship between L and V created by homogeneous mixing.« less

A study on the entrainment and mixing process in the continental stratocumulus clouds measured during the RACORO campaign

NASA Astrophysics Data System (ADS)

Yeom, Jae Min; Yum, Seong Soo; Liu, Yangang; Lu, Chunsong

2017-09-01

Entrainment and mixing processes and their effects on cloud microphysics in the continental stratocumulus clouds observed in Oklahoma during the RACORO campaign are analyzed in the frame of homogeneous and inhomogeneous mixing concepts by combining the approaches of microphysical correlation, mixing diagram, and transition scale (number). A total of 110 horizontally penetrated cloud segments is analyzed. Mixing diagram and cloud microphysical relationship analyses show homogeneous mixing trait of positive relationship between liquid water content (L) and mean volume of droplets (V) (i.e., smaller droplets in more diluted parcel) in most cloud segments. Relatively small temperature and humidity differences between the entraining air from above the cloud top and cloudy air and relatively large turbulent dissipation rate are found to be responsible for this finding. The related scale parameters (i.e., transition length and transition scale number) are relatively large, which also indicates high likelihood of homogeneous mixing. Clear positive relationship between L and vertical velocity (W) for some cloud segments is suggested to be evidence of vertical circulation mixing, which may further enhance the positive relationship between L and V created by homogeneous mixing.

A study on the entrainment and mixing process in the continental stratocumulus clouds measured during the RACORO campaign

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yeom, Jae Min; Yum, Seong Soo; Liu, Yangang

Entrainment and mixing processes and their effects on cloud microphysics in the continental stratocumulus clouds observed in Oklahoma during the RACORO campaign are analyzed in the frame of homogeneous and inhomogeneous mixing concepts by combining the approaches of microphysical correlation, mixing diagram, and transition scale (number). A total of 110 horizontally penetrated cloud segments is analyzed in this paper. Mixing diagram and cloud microphysical relationship analyses show homogeneous mixing trait of positive relationship between liquid water content (L) and mean volume of droplets (V) (i.e., smaller droplets in more diluted parcel) in most cloud segments. Relatively small temperature and humiditymore » differences between the entraining air from above the cloud top and cloudy air and relatively large turbulent dissipation rate are found to be responsible for this finding. The related scale parameters (i.e., transition length and transition scale number) are relatively large, which also indicates high likelihood of homogeneous mixing. Finally, clear positive relationship between L and vertical velocity (W) for some cloud segments is suggested to be evidence of vertical circulation mixing, which may further enhance the positive relationship between L and V created by homogeneous mixing.« less

Final Report - "Foaming and Antifoaming and Gas Entrainment in Radioactive Waste Pretreatment and Immobilization Processes"

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wasan, Darsh T.

2007-10-09

The Savannah River Site (SRS) and Hanford site are in the process of stabilizing millions of gallons of radioactive waste slurries remaining from production of nuclear materials for the Department of Energy (DOE). The Defense Waste Processing Facility (DWPF) at SRS is currently vitrifying the waste in borosilicate glass, while the facilities at the Hanford site are in the construction phase. Both processes utilize slurry-fed joule-heated melters to vitrify the waste slurries. The DWPF has experienced difficulty during operations. The cause of the operational problems has been attributed to foaming, gas entrainment and the rheological properties of the process slurries.more » The rheological properties of the waste slurries limit the total solids content that can be processed by the remote equipment during the pretreatment and meter feed processes. Highly viscous material can lead to air entrainment during agitation and difficulties with pump operations. Excessive foaming in waste evaporators can cause carryover of radionuclides and non-radioactive waste to the condensate system. Experimental and theoretical investigations of the surface phenomena, suspension rheology and bubble generation of interactions that lead to foaming and air entrainment problems in the DOE High Level and Low Activity Radioactive Waste separation and immobilization processes were pursued under this project. The first major task accomplished in the grant proposal involved development of a theoretical model of the phenomenon of foaming in a three-phase gas-liquid-solid slurry system. This work was presented in a recently completed Ph.D. thesis (9). The second major task involved the investigation of the inter-particle interaction and microstructure formation in a model slurry by the batch sedimentation method. Both experiments and modeling studies were carried out. The results were presented in a recently completed Ph.D. thesis. The third task involved the use of laser confocal microscopy to

The performative pleasure of imprecision: a diachronic study of entrainment in music performance.

PubMed

Geeves, Andrew; McIlwain, Doris J; Sutton, John

2014-01-01

This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance.

The performative pleasure of imprecision: a diachronic study of entrainment in music performance

PubMed Central

Geeves, Andrew; McIlwain, Doris J.; Sutton, John

2014-01-01

This study focuses in on a moment of live performance in which the entrainment amongst a musical quartet is threatened. Entrainment is asymmetric in so far as there is an ensemble leader who improvises and expands the structure of a last chorus of a piece of music beyond the limits tacitly negotiated during prior rehearsals and performances. Despite the risk of entrainment being disturbed and performance interrupted, the other three musicians in the quartet follow the leading performer and smoothly transition into unprecedented performance territory. We use this moment of live performance to work back through the fieldwork data, building a diachronic study of the development and bases of entrainment in live music performance. We introduce the concept of entrainment and profile previous theory and research relevant to entrainment in music performance. After outlining our methodology, we trace the evolution of the structure of the piece of music from first rehearsal to final performance. Using video clip analysis, interviews and field notes we consider how entrainment shaped and was shaped by the moment of performance in focus. The sense of trust between quartet musicians is established through entrainment processes, is consolidated via smooth adaptation to the threats of disruption. Non-verbal communicative exchanges, via eye contact, gesture, and spatial proximity, sustain entrainment through phase shifts occurring swiftly and on the fly in performance contexts. These exchanges permit smooth adaptation promoting trust. This frees the quartet members to play with the potential disturbance of equilibrium inherent in entrained relationships and to play with this tension in an improvisatory way that enhances audience engagement and the live quality of performance. PMID:25400567

Self-similar dynamics of air film entrained by a solid disk in confined space: A simple prototype of topological transitions

NASA Astrophysics Data System (ADS)

Nakazato, Hana; Yamagishi, Yuki; Okumura, Ko

2018-05-01

In hydrodynamic topological transitions, one mass of fluid breaks into two or two merge into one. For example, in honey-drop formation when honey is dripping from a spoon, honey is extended to separate into two masses as the liquid neck bridging them thins down to the micron scale. At the moment when the topology changes due to the breakup, physical observables such as surface curvature locally diverge. Such singular dynamics has widely attracted physicists, revealing universality in self-similar dynamics, which shares much in common with critical phenomena in thermodynamics. Many experimental examples have been found, including an electric spout and vibration-induced jet eruption. However, only a few cases have been physically understood on the basis of equations that govern the singular dynamics and even in such a case the physical understanding is mathematically complicated, inevitably involving delicate numerical calculations. Here we study the breakup of air film entrained by a solid disk into viscous liquid in a confined space, which leads to formation, thinning, and breakup of the neck of air. As a result, we unexpectedly find that equations governing the neck dynamics can be solved analytically by virtue of two remarkable experimental features: Only a single length scale linearly dependent on time remains near the singularity and two universal scaling functions describing the singular neck shape and velocity field are both analytic. The present solvable case would be essential for a better understanding of the singular dynamics and will help reveal the physics of unresolved examples intimately related to daily-life phenomena and diverse practical applications.

Rhythm as an affordance for the entrainment of movement.

PubMed

Cummins, Fred

2009-01-01

A general account of rhythm in human behaviour is provided, according to which rhythm inheres in the affordance that a signal provides for the entrainment of movement on the part of a perceiver. This generic account is supported by an explication of the central concepts of affordance and entrainment. When viewed in this light, rhythm appears as the correct explanandum to account for coordinated behaviour in a wide variety of situations, including such core senses as dance and the production of music. Speech may appear to be only marginally rhythmical under such an account, but several experimental studies reveal that speech, too, has the potential to entrain movement. (c) 2009 S. Karger AG, Basel.

Recent Admixture in an Indian Population of African Ancestry

PubMed Central

Narang, Ankita; Jha, Pankaj; Rawat, Vimal; Mukhopadhayay, Arijit; Dash, Debasis; Basu, Analabha; Mukerji, Mitali

2011-01-01

Identification and study of genetic variation in recently admixed populations not only provides insight into historical population events but also is a powerful approach for mapping disease loci. We studied a population (OG-W-IP) that is of African-Indian origin and has resided in the western part of India for 500 years; members of this population are believed to be descendants of the Bantu-speaking population of Africa. We have carried out this study by using a set of 18,534 autosomal markers common between Indian, CEPH-HGDP, and HapMap populations. Principal-components analysis clearly revealed that the African-Indian population derives its ancestry from Bantu-speaking west-African as well as Indo-European-speaking north and northwest Indian population(s). STRUCTURE and ADMIXTURE analyses show that, overall, the OG-W-IPs derive 58.7% of their genomic ancestry from their African past and have very little inter-individual ancestry variation (8.4%). The extent of linkage disequilibrium also reveals that the admixture event has been recent. Functional annotation of genes encompassing the ancestry-informative markers that are closer in allele frequency to the Indian ancestral population revealed significant enrichment of biological processes, such as ion-channel activity, and cadherins. We briefly examine the implications of determining the genetic diversity of this population, which could provide opportunities for studies involving admixture mapping. PMID:21737057

Life-threatening methemoglobinemia after unintentional ingestion of antifreeze admixtures containing sodium nitrite in the construction sites.

PubMed

Sohn, C H; Seo, D W; Ryoo, S M; Lee, J H; Kim, W Y; Lim, K S; Oh, B J

2014-01-01

Construction workers are exposed to a wide variety of health hazards such as poisoning at the construction sites. Various forms of poisoning incidents in construction workers have been reported. However, studies on methemoglobinemia caused by unintentional ingestion of antifreeze admixtures containing sodium nitrite at the construction sites have not been reported yet. The aim of this study was to evaluate life-threatening methemoglobinemia after unintentional ingestion of antifreeze admixtures containing sodium nitrite at the construction sites and describe similar incidents involving ingestion of antifreeze admixtures in Korea. Retrospective observational case series study on patients with methemoglobinemia after unintentional ingestion of antifreeze admixtures containing sodium nitrite admitted to the emergency department (ED) from January 1, 2010 to December 31, 2012 and cases reported to the Korea Occupational Safety and Health Agency (KOSHA) was performed. Results. Six victims were admitted to our ED. They had methemoglobin levels ranging from 32.4% to 71.5% and all of them recovered after receiving one (2 mg/kg) or two doses infusion of methylene blue. From the data of the KOSHA, six incidents that caused 27 victims were identified. Of 27 victims, five were included in the ED cases. For all incidents, antifreeze admixtures were not contained in their original containers and all new containers did not have a new label. All workers mistook antifreeze admixtures for water. Among the 28 victims included in this study, four died. Unintentional ingestion of antifreeze admixtures containing sodium nitrite at the construction sites can cause life-threatening methemoglobinemia. There is a need to store and label potentially hazardous materials properly to avoid unintentional ingestion at the construction sites.

Genome-wide population structure and admixture analysis reveals weak differentiation among Ugandan goat breeds.

PubMed

Onzima, R B; Upadhyay, M R; Mukiibi, R; Kanis, E; Groenen, M A M; Crooijmans, R P M A

2018-02-01

Uganda has a large population of goats, predominantly from indigenous breeds reared in diverse production systems, whose existence is threatened by crossbreeding with exotic Boer goats. Knowledge about the genetic characteristics and relationships among these Ugandan goat breeds and the potential admixture with Boer goats is still limited. Using a medium-density single nucleotide polymorphism (SNP) panel, we assessed the genetic diversity, population structure and admixture in six goat breeds in Uganda: Boer, Karamojong, Kigezi, Mubende, Small East African and Sebei. All the animals had genotypes for about 46 105 SNPs after quality control. We found high proportions of polymorphic SNPs ranging from 0.885 (Kigezi) to 0.928 (Sebei). The overall mean observed (H O ) and expected (H E ) heterozygosity across breeds was 0.355 ± 0.147 and 0.384 ± 0.143 respectively. Principal components, genetic distances and admixture analyses revealed weak population sub-structuring among the breeds. Principal components separated Kigezi and weakly Small East African from other indigenous goats. Sebei and Karamojong were tightly entangled together, whereas Mubende occupied a more central position with high admixture from all other local breeds. The Boer breed showed a unique cluster from the Ugandan indigenous goat breeds. The results reflect common ancestry but also some level of geographical differentiation. admixture and f 4 statistics revealed gene flow from Boer and varying levels of genetic admixture among the breeds. Generally, moderate to high levels of genetic variability were observed. Our findings provide useful insights into maintaining genetic diversity and designing appropriate breeding programs to exploit within-breed diversity and heterozygote advantage in crossbreeding schemes. © 2018 The Authors. Animal Genetics published by John Wiley & Sons Ltd on behalf of Stichting International Foundation for Animal Genetics.

Efficient Moment-Based Inference of Admixture Parameters and Sources of Gene Flow

PubMed Central

Levin, Alex; Reich, David; Patterson, Nick; Berger, Bonnie

2013-01-01

The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still a challenge, however, to infer reliable parameter values for complicated models involving many populations. Here, we present MixMapper, an efficient, interactive method for constructing phylogenetic trees including admixture events using single nucleotide polymorphism (SNP) genotype data. MixMapper implements a novel two-phase approach to admixture inference using moment statistics, first building an unadmixed scaffold tree and then adding admixed populations by solving systems of equations that express allele frequency divergences in terms of mixture parameters. Importantly, all features of the model, including topology, sources of gene flow, branch lengths, and mixture proportions, are optimized automatically from the data and include estimates of statistical uncertainty. MixMapper also uses a new method to express branch lengths in easily interpretable drift units. We apply MixMapper to recently published data for Human Genome Diversity Cell Line Panel individuals genotyped on a SNP array designed especially for use in population genetics studies, obtaining confident results for 30 populations, 20 of them admixed. Notably, we confirm a signal of ancient admixture in European populations—including previously undetected admixture in Sardinians and Basques—involving a proportion of 20–40% ancient northern Eurasian ancestry. PMID:23709261

Strong selection at MHC in Mexicans since admixture

USDA-ARS?s Scientific Manuscript database

Mexicans are a recent admixture of Amerindians, Europeans, and Africans. We performed local ancestry analysis of Mexican samples from two genome-wide association studies obtained from dbGaP, and discovered that at the major histocompatibility complex (MHC) region Mexicans have excessive African ance...

Doing Duo – a case study of entrainment in William Forsythe’s choreography “Duo”

PubMed Central

Waterhouse, Elizabeth; Watts, Riley; Bläsing, Bettina E.

2014-01-01

Entrainment theory focuses on processes in which interacting (i.e., coupled) rhythmic systems stabilize, producing synchronization in the ideal sense, and forms of phase related rhythmic coordination in complex cases. In human action, entrainment involves spatiotemporal and social aspects, characterizing the meaningful activities of music, dance, and communication. How can the phenomenon of human entrainment be meaningfully studied in complex situations such as dance? We present an in-progress case study of entrainment in William Forsythe’s choreography Duo, a duet in which coordinated rhythmic activity is achieved without an external musical beat and without touch-based interaction. Using concepts of entrainment from different disciplines as well as insight from Duo performer Riley Watts, we question definitions of entrainment in the context of dance. The functions of chorusing, turn-taking, complementary action, cues, and alignments are discussed and linked to supporting annotated video material. While Duo challenges the definition of entrainment in dance as coordinated response to an external musical or rhythmic signal, it supports the definition of entrainment as coordinated interplay of motion and sound production by active agents (i.e., dancers) in the field. Agreeing that human entrainment should be studied on multiple levels, we suggest that entrainment between the dancers in Duo is elastic in time and propose how to test this hypothesis empirically. We do not claim that our proposed model of elasticity is applicable to all forms of human entrainment nor to all examples of entrainment in dance. Rather, we suggest studying higher order phase correction (the stabilizing tendency of entrainment) as a potential aspect to be incorporated into other models. PMID:25374522

Neurobiological foundations of neurologic music therapy: rhythmic entrainment and the motor system

PubMed Central

Thaut, Michael H.; McIntosh, Gerald C.; Hoemberg, Volker

2015-01-01

Entrainment is defined by a temporal locking process in which one system’s motion or signal frequency entrains the frequency of another system. This process is a universal phenomenon that can be observed in physical (e.g., pendulum clocks) and biological systems (e.g., fire flies). However, entrainment can also be observed between human sensory and motor systems. The function of rhythmic entrainment in rehabilitative training and learning was established for the first time by Thaut and colleagues in several research studies in the early 1990s. It was shown that the inherent periodicity of auditory rhythmic patterns could entrain movement patterns in patients with movement disorders (see for a review: Thaut et al., 1999). Physiological, kinematic, and behavioral movement analysis showed very quickly that entrainment cues not only changed the timing of movement but also improved spatial and force parameters. Mathematical models have shown that anticipatory rhythmic templates as critical time constraints can result in the complete specification of the dynamics of a movement over the entire movement cycle, thereby optimizing motor planning and execution. Furthermore, temporal rhythmic entrainment has been successfully extended into applications in cognitive rehabilitation and speech and language rehabilitation, and thus become one of the major neurological mechanisms linking music and rhythm to brain rehabilitation. These findings provided a scientific basis for the development of neurologic music therapy. PMID:25774137

Neurobiological foundations of neurologic music therapy: rhythmic entrainment and the motor system.

PubMed

Thaut, Michael H; McIntosh, Gerald C; Hoemberg, Volker

2014-01-01

Entrainment is defined by a temporal locking process in which one system's motion or signal frequency entrains the frequency of another system. This process is a universal phenomenon that can be observed in physical (e.g., pendulum clocks) and biological systems (e.g., fire flies). However, entrainment can also be observed between human sensory and motor systems. The function of rhythmic entrainment in rehabilitative training and learning was established for the first time by Thaut and colleagues in several research studies in the early 1990s. It was shown that the inherent periodicity of auditory rhythmic patterns could entrain movement patterns in patients with movement disorders (see for a review: Thaut et al., 1999). Physiological, kinematic, and behavioral movement analysis showed very quickly that entrainment cues not only changed the timing of movement but also improved spatial and force parameters. Mathematical models have shown that anticipatory rhythmic templates as critical time constraints can result in the complete specification of the dynamics of a movement over the entire movement cycle, thereby optimizing motor planning and execution. Furthermore, temporal rhythmic entrainment has been successfully extended into applications in cognitive rehabilitation and speech and language rehabilitation, and thus become one of the major neurological mechanisms linking music and rhythm to brain rehabilitation. These findings provided a scientific basis for the development of neurologic music therapy.

Oscillation of a polymer gel entrained with a periodic force.

PubMed

Shiota, Takaya; Ikura, Yumihiko S; Nakata, Satoshi

2013-02-21

The oscillation of a polymer gel induced by the Belousov-Zhabotinsky (BZ) reaction was investigated under an external force composed of a square wave. The oscillation of the BZ reaction entrained to the periodic force and the features of this entrainment changed depending on the period and duty cycle of the square wave. The experimental results suggest that the change in the volume of the gel also gave feedback to the BZ reaction. The mechanism of entrainment is discussed in relation to the compression of the gel and the reaction-diffusion system in the BZ reaction.

Generation of low-temperature air plasma for food processing

NASA Astrophysics Data System (ADS)

Stepanova, Olga; Demidova, Maria; Astafiev, Alexander; Pinchuk, Mikhail; Balkir, Pinar; Turantas, Fulya

2015-11-01

The project is aimed at developing a physical and technical foundation of generating plasma with low gas temperature at atmospheric pressure for food industry needs. As known, plasma has an antimicrobial effect on the numerous types of microorganisms, including those that cause food spoilage. In this work an original experimental setup has been developed for the treatment of different foods. It is based on initiating corona or dielectric-barrier discharge in a chamber filled with ambient air in combination with a certain helium admixture. The experimental setup provides various conditions of discharge generation (including discharge gap geometry, supply voltage, velocity of gas flow, content of helium admixture in air and working pressure) and allows for the measurement of the electrical discharge parameters. Some recommendations on choosing optimal conditions of discharge generation for experiments on plasma food processing are developed.

Tagging the neuronal entrainment to beat and meter.

PubMed

Nozaradan, Sylvie; Peretz, Isabelle; Missal, Marcus; Mouraux, André

2011-07-13

Feeling the beat and meter is fundamental to the experience of music. However, how these periodicities are represented in the brain remains largely unknown. Here, we test whether this function emerges from the entrainment of neurons resonating to the beat and meter. We recorded the electroencephalogram while participants listened to a musical beat and imagined a binary or a ternary meter on this beat (i.e., a march or a waltz). We found that the beat elicits a sustained periodic EEG response tuned to the beat frequency. Most importantly, we found that meter imagery elicits an additional frequency tuned to the corresponding metric interpretation of this beat. These results provide compelling evidence that neural entrainment to beat and meter can be captured directly in the electroencephalogram. More generally, our results suggest that music constitutes a unique context to explore entrainment phenomena in dynamic cognitive processing at the level of neural networks.

Speech Rate Entrainment in Children and Adults With and Without Autism Spectrum Disorder.

PubMed

Wynn, Camille J; Borrie, Stephanie A; Sellers, Tyra P

2018-05-03

Conversational entrainment, a phenomenon whereby people modify their behaviors to match their communication partner, has been evidenced as critical to successful conversation. It is plausible that deficits in entrainment contribute to the conversational breakdowns and social difficulties exhibited by people with autism spectrum disorder (ASD). This study examined speech rate entrainment in children and adult populations with and without ASD. Sixty participants including typically developing children, children with ASD, typically developed adults, and adults with ASD participated in a quasi-conversational paradigm with a pseudoconfederate. The confederate's speech rate was digitally manipulated to create slow and fast speech rate conditions. Typically developed adults entrained their speech rate in the quasi-conversational paradigm, using a faster rate during the fast speech rate conditions and a slower rate during the slow speech rate conditions. This entrainment pattern was not evident in adults with ASD or in children populations. Findings suggest that speech rate entrainment is a developmentally acquired skill and offers preliminary evidence of speech rate entrainment deficits in adults with ASD. Impairments in this area may contribute to the conversational breakdowns and social difficulties experienced by this population. Future work is needed to advance this area of inquiry.

Complex Admixture Preceded and Followed the Extinction of Wisent in the Wild

PubMed Central

Hartmann, Stefanie; Paijmans, Johanna L. A.; Taron, Ulrike; Xenikoudakis, Georgios; Cahill, James A.; Heintzman, Peter D.; Shapiro, Beth; Baryshnikov, Gennady; Bunevich, Aleksei N.; Crees, Jennifer J.; Dobosz, Roland; Manaserian, Ninna; Okarma, Henryk; Tokarska, Małgorzata; Turvey, Samuel T.; Wójcik, Jan M.; Żyła, Waldemar; Szymura, Jacek M.; Hofreiter, Michael

2017-01-01

Retracing complex population processes that precede extreme bottlenecks may be impossible using data from living individuals. The wisent (Bison bonasus), Europe’s largest terrestrial mammal, exemplifies such a population history, having gone extinct in the wild but subsequently restored by captive breeding efforts. Using low coverage genomic data from modern and historical individuals, we investigate population processes occurring before and after this extinction. Analysis of aligned genomes supports the division of wisent into two previously recognized subspecies, but almost half of the genomic alignment contradicts this population history as a result of incomplete lineage sorting and admixture. Admixture between subspecies populations occurred prior to extinction and subsequently during the captive breeding program. Admixture with the Bos cattle lineage is also widespread but results from ancient events rather than recent hybridization with domestics. Our study demonstrates the huge potential of historical genomes for both studying evolutionary histories and for guiding conservation strategies. PMID:28007976

The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape

PubMed Central

Busby, George B.J.; Hellenthal, Garrett; Montinaro, Francesco; Tofanelli, Sergio; Bulayeva, Kazima; Rudan, Igor; Zemunik, Tatijana; Hayward, Caroline; Toncheva, Draga; Karachanak-Yankova, Sena; Nesheva, Desislava; Anagnostou, Paolo; Cali, Francesco; Brisighelli, Francesca; Romano, Valentino; Lefranc, Gerard; Buresi, Catherine; Ben Chibani, Jemni; Haj-Khelil, Amel; Denden, Sabri; Ploski, Rafal; Krajewski, Pawel; Hervig, Tor; Moen, Torolf; Herrera, Rene J.; Wilson, James F.; Myers, Simon; Capelli, Cristian

2015-01-01

Summary Over the past few years, studies of DNA isolated from human fossils and archaeological remains have generated considerable novel insight into the history of our species. Several landmark papers have described the genomes of ancient humans across West Eurasia, demonstrating the presence of large-scale, dynamic population movements over the last 10,000 years, such that ancestry across present-day populations is likely to be a mixture of several ancient groups [1, 2, 3, 4, 5, 6, 7]. While these efforts are bringing the details of West Eurasian prehistory into increasing focus, studies aimed at understanding the processes behind the generation of the current West Eurasian genetic landscape have been limited by the number of populations sampled or have been either too regional or global in their outlook [8, 9, 10, 11]. Here, using recently described haplotype-based techniques [11], we present the results of a systematic survey of recent admixture history across Western Eurasia and show that admixture is a universal property across almost all groups. Admixture in all regions except North Western Europe involved the influx of genetic material from outside of West Eurasia, which we date to specific time periods. Within Northern, Western, and Central Europe, admixture tended to occur between local groups during the period 300 to 1200 CE. Comparisons of the genetic profiles of West Eurasians before and after admixture show that population movements within the last 1,500 years are likely to have maintained differentiation among groups. Our analysis provides a timeline of the gene flow events that have generated the contemporary genetic landscape of West Eurasia. PMID:26387712

Queueing-Based Synchronization and Entrainment for Synthetic Gene Oscillators

NASA Astrophysics Data System (ADS)

Mather, William; Butzin, Nicholas; Hochendoner, Philip; Ogle, Curtis

Synthetic gene oscillators have been a major focus of synthetic biology research since the beginning of the field 15 years ago. They have proven to be useful both for biotechnological applications as well as a testing ground to significantly develop our understanding of the design principles behind synthetic and native gene oscillators. In particular, the principles governing synchronization and entrainment of biological oscillators have been explored using a synthetic biology approach. Our work combines experimental and theoretical approaches to specifically investigate how a bottleneck for protein degradation, which is present in most if not all existing synthetic oscillators, can be leveraged to robustly synchronize and entrain biological oscillators. We use both the terminology and mathematical tools of queueing theory to intuitively explain the role of this bottleneck in both synchronization and entrainment, which extends prior work demonstrating the usefulness of queueing theory in synthetic and native gene circuits. We conclude with an investigation of how synchronization and entrainment may be sensitive to the presence of multiple proteolytic pathways in a cell that couple weakly through crosstalk. This work was supported by NSF Grant #1330180.

Procedures for evaluating corrosion-inhibiting admixtures for structural concrete

DOT National Transportation Integrated Search

2000-06-01

The objectives of this research were to (1) develop procedures for evaluating and qualifying corrosion-inhibiting admixtures (CIAs) and (2) recommend performance criteria for their acceptance. Phase I work included a literature review of CIAs, the re...

Saltation thresholds and entrainment of fine particles at Earth and Martian pressures

NASA Technical Reports Server (NTRS)

Leach, Rodman; Greeley, Ronald; Pollack, James

1989-01-01

An open circuit wind tunnel designed to operate in a large vacuum chamber was built at NASA-Ames to investigate saltation threshold, flux, deflation rates, and other aeolian phenomena on the planet Mars. The vacuum chamber will operate at pressures as low as 4 mbar, and the tunnel operates at windspeeds as high as 150 m/sec. Either air or CO2 can be used as a working fluid. It was found that, to a first order approximation, the same dynamic pressure was required at Martian pressure to entrain or saltate particles as was required on Earth, although wind and particle speed are considerably higher at Martian pressure. A 2nd wind tunnel, designed to operate aboard the NASA KC-135 0-g aircraft to obtain information on the effect of gravity on saltation threshold and the interparticle force at 0-g, is also described and test data presented. Some of the experiments are summarized and various aspects of low pressure aeolian entrainment for particles 12 to 100 micron in diameter are discussed, some of them unique to low pressure testing and some common in Earth pressure particle transport testing. The facility, the modes of operation, and the materials used are described.

Is the food-entrainable circadian oscillator in the digestive system?

NASA Technical Reports Server (NTRS)

Davidson, A. J.; Poole, A. S.; Yamazaki, S.; Menaker, M.

2003-01-01

Food-anticipatory activity (FAA) is the increase in locomotion and core body temperature that precedes a daily scheduled meal. It is driven by a circadian oscillator but is independent of the suprachiasmatic nuclei. Recent results that reveal meal-entrained clock gene expression in rat and mouse peripheral organs raise the intriguing possibility that the digestive system is the site of the feeding-entrained oscillator (FEO) that underlies FAA. We tested this possibility by comparing FAA and Per1 rhythmicity in the digestive system of the Per1-luciferase transgenic rat. First, rats were entrained to daytime restricted feeding (RF, 10 days), then fed ad libitum (AL, 10 days), then food deprived (FD, 2 days). As expected FAA was evident during RF and disappeared during subsequent AL feeding, but returned at the correct phase during deprivation. The phase of Per1 in liver, stomach and colon shifted from a nocturnal to a diurnal peak during RF, but shifted back to nocturnal phase during the subsequent AL and remained nocturnal during food deprivation periods. Second, rats were entrained to two daily meals at zeitgeber time (ZT) 0400 and ZT 1600. FAA to both meals emerged after about 10days of dual RF. However, all tissues studied (all five liver lobes, esophagus, antral stomach, body of stomach, colon) showed entrainment consistent with only the night-time meal. These two results are inconsistent with the hypothesis that FAA arises as an output of rhythms in the gastrointestinal (GI) system. The results also highlight an interesting diversity among peripheral oscillators in their ability to entrain to meals and the direction of the phase shift after RF ends.

The optimization of concrete mixtures for use in highway applications

NASA Astrophysics Data System (ADS)

Moini, Mohamadreza

Portland cement concrete is most used commodity in the world after water. Major part of civil and transportation infrastructure including bridges, roadway pavements, dams, and buildings is made of concrete. In addition to this, concrete durability is often of major concerns. In 2013 American Society of Civil Engineers (ASCE) estimated that an annual investment of 170 billion on roads and 20.5 billion for bridges is needed on an annual basis to substantially improve the condition of infrastructure. Same article reports that one-third of America's major roads are in poor or mediocre condition [1]. However, portland cement production is recognized with approximately one cubic meter of carbon dioxide emission. Indeed, the proper and systematic design of concrete mixtures for highway applications is essential as concrete pavements represent up to 60% of interstate highway systems with heavier traffic loads. Combined principles of material science and engineering can provide adequate methods and tools to facilitate the concrete design and improve the existing specifications. In the same manner, the durability must be addressed in the design and enhancement of long-term performance. Concrete used for highway pavement applications has low cement content and can be placed at low slump. However, further reduction of cement content (e.g., versus current specifications of Wisconsin Department of Transportation to 315-338 kg/m 3 (530-570 lb/yd3) for mainstream concrete pavements and 335 kg/m3 (565 lb/yd3) for bridge substructure and superstructures) requires delicate design of the mixture to maintain the expected workability, overall performance, and long-term durability in the field. The design includes, but not limited to optimization of aggregates, supplementary cementitious materials (SCMs), chemical and air-entraining admixtures. This research investigated various theoretical and experimental methods of aggregate optimization applicable for the reduction of cement content

Complete or partial circadian re-entrainment improves performance, alertness, and mood during night-shift work.

PubMed

Crowley, Stephanie J; Lee, Clara; Tseng, Christine Y; Fogg, Louis F; Eastman, Charmane I

2004-09-15

To assess performance, alertness, and mood during the night shift and subsequent daytime sleep in relation to the degree of re-alignment (re-entrainment) of circadian rhythms with a night-work, day-sleep schedule. Subjects spent 5 consecutive night shifts (11:00 pm-7:00 am) in the lab and slept at home in darkened bedrooms (8:30 am-3:30 pm). Subjects were categorized by the degree of re-entrainment attained after the 5 night shifts. Completely re-entrained: temperature minimum in the second half of daytime sleep; partially re-entrained: temperature minimum in the first half of daytime sleep; not re-entrained: temperature minimum did not delay enough to reach daytime sleep. See above. Young healthy adults (n = 67) who were not shift workers. Included bright light during the night shifts, sunglasses worn outside, a fixed dark daytime sleep episode, and melatonin. The effects of various combinations of these interventions on circadian re-entrainment were previously reported. Here we report how the degree of re-entrainment affected daytime sleep and measures collected during the night shift. Salivary melatonin was collected every 30 minutes in dim light (<20 lux) before and after the night shifts to determine the dim light melatonin onset, and the temperature minimum was estimated by adding a constant (7 hours) to the dim light melatonin onset. Subjects kept sleep logs, which were verified by actigraphy. The Neurobehavioral Assessment Battery was completed several times during each night shift. Baseline sleep schedules and circadian phase differed among the 3 re-entrainment groups, with later times resulting in more re-entrainment. The Neurobehavioral Assessment Battery showed that performance, sleepiness, and mood were better in the groups that re-entrained compared to the group that did not re-entrain, but there were no significant differences between the partial and complete re-entrainment groups. Subjects slept almost all of the allotted 7 hours during the day, and

Admixture patterns and genetic differentiation in negrito groups from West Malaysia estimated from genome-wide SNP data.

PubMed

Jinam, Timothy A; Phipps, Maude E; Saitou, Naruya

2013-01-01

Southeast Asia houses various culturally and linguistically diverse ethnic groups. In Malaysia, where the Malay, Chinese, and Indian ethnic groups form the majority, there exist minority groups such as the "negritos" who are believed to be descendants of the earliest settlers of Southeast Asia. Here we report patterns of genetic substructure and admixture in two Malaysian negrito populations (Jehai and Kensiu), using ~50,000 genome-wide single-nucleotide polymorphism (SNP) data. We found traces of recent admixture in both the negrito populations, particularly in the Jehai, with the Malay through principal component analysis and STRUCTURE analysis software, which suggested that the admixture was as recent as one generation ago. We also identified significantly differentiated nonsynonymous SNPs and haplotype blocks related to intracellular transport, metabolic processes, and detection of stimulus. These results highlight the different levels of admixture experienced by the two Malaysian negritos. Delineating admixture and differentiated genomic regions should be of importance in designing and interpretation of molecular anthropology and disease association studies. Copyright © 2013 Wayne State University Press, Detroit, Michigan 48201-1309.

Thermal properties of alkali-activated aluminosilicates with CNT admixture

NASA Astrophysics Data System (ADS)

Zmeskal, Oldrich; Trhlikova, Lucie; Fiala, Lukas; Florian, Pavel; Cerny, Robert

2017-07-01

Material properties of electrically conductive cement-based materials with increased attention paid on electric and thermal properties were often studied in the last years. Both electric and thermal properties play an important role thanks to their possible utilization in various practical applications (e.g. snow-melting systems or building structures monitoring systems without the need of an external monitoring system). The DC/AC characteristics depend significantly on the electrical resistivity and the electrical capacity of bulk materials. With respect to the DC/AC characteristics of cement-based materials, such materials can be basically classified as electric insulators. In order to enhance them, various conductive admixtures such as those based on different forms of carbon, can be used. Typical representatives of carbon-based admixtures are carbon nanotubes (CNT), carbon fibers (CF), graphite powder (GP) and carbon black (CB). With an adequate amount of such admixtures, electric properties significantly change and new materials with higher added value can be prepared. However, other types of materials can be enhanced in the same way. Alkali-activated aluminosilicates (AAA) based on blast furnace slag are materials with high compressive strength comparable with cement-based materials. Moreover, the price of slag is lower than of Portland cement. Therefore, this paper deals with the study of thermal properties of this promising material with different concentrations of CNT. Within the paper a simple method of basic thermal parameters determination based on the thermal transient response to a heat power step is presented.

Complex Patterns of Genomic Admixture within Southern Africa

PubMed Central

Petersen, Desiree C.; Libiger, Ondrej; Tindall, Elizabeth A.; Hardie, Rae-Anne; Hannick, Linda I.; Glashoff, Richard H.; Mukerji, Mitali; Fernandez, Pedro; Haacke, Wilfrid; Schork, Nicholas J.; Hayes, Vanessa M.

2013-01-01

Within-population genetic diversity is greatest within Africa, while between-population genetic diversity is directly proportional to geographic distance. The most divergent contemporary human populations include the click-speaking forager peoples of southern Africa, broadly defined as Khoesan. Both intra- (Bantu expansion) and inter-continental migration (European-driven colonization) have resulted in complex patterns of admixture between ancient geographically isolated Khoesan and more recently diverged populations. Using gender-specific analysis and almost 1 million autosomal markers, we determine the significance of estimated ancestral contributions that have shaped five contemporary southern African populations in a cohort of 103 individuals. Limited by lack of available data for homogenous Khoesan representation, we identify the Ju/'hoan (n = 19) as a distinct early diverging human lineage with little to no significant non-Khoesan contribution. In contrast to the Ju/'hoan, we identify ancient signatures of Khoesan and Bantu unions resulting in significant Khoesan- and Bantu-derived contributions to the Southern Bantu amaXhosa (n = 15) and Khoesan !Xun (n = 14), respectively. Our data further suggests that contemporary !Xun represent distinct Khoesan prehistories. Khoesan assimilation with European settlement at the most southern tip of Africa resulted in significant ancestral Khoesan contributions to the Coloured (n = 25) and Baster (n = 30) populations. The latter populations were further impacted by 170 years of East Indian slave trade and intra-continental migrations resulting in a complex pattern of genetic variation (admixture). The populations of southern Africa provide a unique opportunity to investigate the genomic variability from some of the oldest human lineages to the implications of complex admixture patterns including ancient and recently diverged human lineages. PMID:23516368

The Impact of Rhythmic Entrainment on a Person with Autism.

ERIC Educational Resources Information Center

Orr, Tracy Jo; Myles, Brenda Smith; Carlson, Judith K.

1998-01-01

A study investigated the impact of rhythmic entrainment on an 11-year-old girl with autism who engaged in head jerking and screaming. Rhythmic entrainment intervention was more effective when she exhibited behavior that resulted from a moderate level of stress and less effective when stressors were more severe. (CR)

Searching for roots of entrainment and joint action in early musical interactions.

PubMed

Phillips-Silver, Jessica; Keller, Peter E

2012-01-01

When people play music and dance together, they engage in forms of musical joint action that are often characterized by a shared sense of rhythmic timing and affective state (i.e., temporal and affective entrainment). In order to understand the origins of musical joint action, we propose a model in which entrainment is linked to dual mechanisms (motor resonance and action simulation), which in turn support musical behavior (imitation and complementary joint action). To illustrate this model, we consider two generic forms of joint musical behavior: chorusing and turn-taking. We explore how these common behaviors can be founded on entrainment capacities established early in human development, specifically during musical interactions between infants and their caregivers. If the roots of entrainment are found in early musical interactions which are practiced from childhood into adulthood, then we propose that the rehearsal of advanced musical ensemble skills can be considered to be a refined, mimetic form of temporal and affective entrainment whose evolution begins in infancy.

Searching for Roots of Entrainment and Joint Action in Early Musical Interactions

PubMed Central

Phillips-Silver, Jessica; Keller, Peter E.

2012-01-01

When people play music and dance together, they engage in forms of musical joint action that are often characterized by a shared sense of rhythmic timing and affective state (i.e., temporal and affective entrainment). In order to understand the origins of musical joint action, we propose a model in which entrainment is linked to dual mechanisms (motor resonance and action simulation), which in turn support musical behavior (imitation and complementary joint action). To illustrate this model, we consider two generic forms of joint musical behavior: chorusing and turn-taking. We explore how these common behaviors can be founded on entrainment capacities established early in human development, specifically during musical interactions between infants and their caregivers. If the roots of entrainment are found in early musical interactions which are practiced from childhood into adulthood, then we propose that the rehearsal of advanced musical ensemble skills can be considered to be a refined, mimetic form of temporal and affective entrainment whose evolution begins in infancy. PMID:22375113

Bed-material entrainment potential, Roaring Fork River at Basalt, Colorado

USGS Publications Warehouse

Elliott, John G.

2002-01-01

The Roaring Fork River at Basalt, Colorado, has a frequently mobile streambed composed of gravel, cobbles, and boulders. Recent urban and highway development on the flood plain, earlier attempts to realign and confine the channel, and flow obstructions such as bridge openings and piers have altered the hydrology, hydraulics, sediment transport, and sediment deposition areas of the Roaring Fork. Entrainment and deposition of coarse sediment on the streambed and in large alluvial bars have reduced the flood-conveying capacity of the river. Previous engineering studies have identified flood-prone areas and hazards related to inundation and high streamflow velocity, but those studies have not evaluated the potential response of the channel to discharges that entrain the coarse streambed. This study builds upon the results of earlier flood studies and identifies some potential areas of concern associated with bed-material entrainment. Cross-section surveys and simulated water-surface elevations from a previously run HEC?RAS model were used to calculate the boundary shear stress on the mean streambed, in the thalweg, and on the tops of adjacent alluvial bars for four reference streamflows. Sediment-size characteristics were determined for surficial material on the streambed, on large alluvial bars, and on a streambank. The median particle size (d50) for the streambed samples was 165 millimeters and for the alluvial bars and bank samples was 107 millimeters. Shear stresses generated by the 10-, 50-, and 100-year floods, and by a more common flow that just inundated most of the alluvial bars in the study reach were calculated at 14 of the cross sections used in the Roaring Fork River HEC?RAS model. The Shields equation was used with a Shields parameter of 0.030 to estimate the critical shear stress for entrainment of the median sediment particle size on the mean streambed, in the thalweg, and on adjacent alluvial bar surfaces at the 14 cross sections. Sediment-entrainment

Decision analysis applied to the purchase of frozen premixed intravenous admixtures.

PubMed

Witte, K W; Eck, T A; Vogel, D P

1985-04-01

A structured decision-analysis model was used to evaluate frozen premixed cefazolin admixtures. Decision analysis is a process of stating the desired outcome, establishing and weighting evaluation criteria, identifying options for reaching the outcome, evaluating and numerically ranking each option for each criterion, multiplying the ranking by the weight for each criterion, and calculating total points for each option. It was used to compare objectively frozen premixed cefazolin admixtures with batch reconstitution from vials and reconstitution of lyophilized, ready-to-mix containers. In this institution the model numerically demonstrated a distinct preference for the premixed frozen admixture over these other alternatives. A comparison of these results with the total cost impact of each option resulted in a decision to purchase the frozen premixed solution. The advantages of the frozen premixed solution that contributed most to this decision were decreased waste and personnel time. The latter was especially important since it allowed for the reallocation of personnel resources to other potentially cost-reducing clinical functions. Decision analysis proved to be an effective tool for formalizing the process of selecting among various alternatives to reach a desired outcome in this hospital pharmacy.

Non-parametric entrainment by natural twilight in the microchiropteran bat, Hipposideros speoris inside a cave.

PubMed

Joshi, D S; Vanlalnghaka, C

2005-01-01

The study aimed to determine the influence of repeated natural dawn and dusk twilight pulses in entraining the circadian flight activity rhythm of the microchiropteran bat, Hipposideros speoris, free-running in constant darkness in a natural cave. The bats were exposed to repeated dawn or dusk twilight pulses at eight circadian phases. All bats exposed to dawn twilight pulses were entrained by advancing transients, and the stable entrainment was reached when the onset of activity occurred about 12 h before the lights-on of the pulses, irrespective of the initial phase at which the bats were exposed to twilight. All bats exposed to dusk twilight pulses, however, were entrained by delaying transients, and the stable entrainment was reached when the onset of activity occurred about 1.6 h after the lights-on of the pulses. The entrainment caused by dawn and dusk twilight pulses is discussed in the context of the postulated two photoreceptors: the short wavelength sensitive (S) photoreceptors mediating entrainment via dusk twilight, and the medium wavelength sensitive (M) photoreceptors mediating entrainment via dawn twilight.

Infrared scan of concrete admixtures and structural steel paints.

DOT National Transportation Integrated Search

2011-06-01

This study evaluates correlation coefficients for concrete admixtures and structural steel paints by : performing IR scans using ASTM C494-05a specifications. The intent of this study is to perform a : sufficient number of IR scans from different bat...

The role of the endocrine system in feeding-induced tissue-specific circadian entrainment.

PubMed

Sato, Miho; Murakami, Mariko; Node, Koichi; Matsumura, Ritsuko; Akashi, Makoto

2014-07-24

The circadian clock is entrained to environmental cycles by external cue-mediated phase adjustment. Although the light input pathway has been well defined, the mechanism of feeding-induced phase resetting remains unclear. The tissue-specific sensitivity of peripheral entrainment to feeding suggests the involvement of multiple pathways, including humoral and neuronal signals. Previous in vitro studies with cultured cells indicate that endocrine factors may function as entrainment cues for peripheral clocks. However, blood-borne factors that are well characterized in actual feeding-induced resetting have yet to be identified. Here, we report that insulin may be involved in feeding-induced tissue-type-dependent entrainment in vivo. In ex vivo culture experiments, insulin-induced phase shift in peripheral clocks was dependent on tissue type, which was consistent with tissue-specific insulin sensitivity, and peripheral entrainment in insulin-sensitive tissues involved PI3K- and MAPK-mediated signaling pathways. These results suggest that insulin may be an immediate early factor in feeding-mediated tissue-specific entrainment. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

Research on curing behavior of concrete with anti-frost admixtures at subzero temperature

NASA Astrophysics Data System (ADS)

Ionov, Yulian; Kramar, Ludmila; Kirsanova, Alena; Kolegova, Irina

2017-01-01

The purpose of this paper is research on curing behavior of cold-weather concrete with anti-frost admixtures. During the study derivative thermal and X-ray phase analyses were performed and tests were carried out according to the standard GOST technique. The research results obtained reveal the peculiarities of cement hydration and concrete curing at subzero temperatures. The influence of subzero temperatures and anti-frost admixtures on hydrated phases of hardened cement paste and concrete strength formation was studied. It is found that cold-weather concrete does not cure at subzero temperatures, but when defrosting it attains 80 to 85% of its grade strength by the 28th day. Concrete achieves its grade strength when curing in normal conditions in 60 days only. Freezing concrete with anti-frost admixtures results in increase of calcium hydroxide content in hardened cement paste immediately when produced and has increased tendency of concrete to carbonation.

Genome-wide Scan of 29,141 African Americans Finds No Evidence of Directional Selection since Admixture

PubMed Central

Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C.; Ambrosone, Christine B.; Amos, Christopher; Bandera, Elisa V.; Berndt, Sonja I.; Bernstein, Leslie; Blot, William J.; Bock, Cathryn H.; Caporaso, Neil; Casey, Graham; Deming, Sandra L.; Diver, W. Ryan; Gapstur, Susan M.; Gillanders, Elizabeth M.; Harris, Curtis C.; Henderson, Brian E.; Ingles, Sue A.; Isaacs, William; De Jager, Phillip L.; John, Esther M.; Kittles, Rick A.; Larkin, Emma; McNeill, Lorna H.; Millikan, Robert C.; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F.; Rodriguez-Gil, Jorge L.; Rybicki, Benjamin A.; Schwartz, Ann G.; Signorello, Lisa B.; Spitz, Margaret; Strom, Sara S.; Tucker, Margaret A.; Wiencke, John K.; Witte, John S.; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A.; Zheng, Wei; Ziegler, Regina G.; Chanock, Stephen J.; Haiman, Christopher A.; Reich, David; Price, Alkes L.

2014-01-01

The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study’s conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas. PMID:25242497

Suppression of competing speech through entrainment of cortical oscillations

PubMed Central

D'Zmura, Michael; Srinivasan, Ramesh

2013-01-01

People are highly skilled at attending to one speaker in the presence of competitors, but the neural mechanisms supporting this remain unclear. Recent studies have argued that the auditory system enhances the gain of a speech stream relative to competitors by entraining (or “phase-locking”) to the rhythmic structure in its acoustic envelope, thus ensuring that syllables arrive during periods of high neuronal excitability. We hypothesized that such a mechanism could also suppress a competing speech stream by ensuring that syllables arrive during periods of low neuronal excitability. To test this, we analyzed high-density EEG recorded from human adults while they attended to one of two competing, naturalistic speech streams. By calculating the cross-correlation between the EEG channels and the speech envelopes, we found evidence of entrainment to the attended speech's acoustic envelope as well as weaker yet significant entrainment to the unattended speech's envelope. An independent component analysis (ICA) decomposition of the data revealed sources in the posterior temporal cortices that displayed robust correlations to both the attended and unattended envelopes. Critically, in these components the signs of the correlations when attended were opposite those when unattended, consistent with the hypothesized entrainment-based suppressive mechanism. PMID:23515789

Cloud microphysical relationships and their implication on entrainment and mixing mechanism for the stratocumulus clouds measured during the VOCALS project

DOE PAGES

Yum, Seong Soo; Wang, Jian; Liu, Yangang; ...

2015-05-27

Cloud microphysical data obtained from G-1 aircraft flights over the southeastern pacific during the VOCALS-Rex field campaign were analyzed for evidence of entrainment mixing of dry air from above cloud top. Mixing diagram analysis was made for the horizontal flight data recorded at 1 Hz and 40 Hz. The dominant observed feature, a positive relationship between cloud droplet mean volume (V) and liquid water content (L), suggested occurrence of homogeneous mixing. On the other hand, estimation of the relevant scale parameters (i.e., transition length scale and transition scale number) consistently indicated inhomogeneous mixing. Importantly, the flight altitudes of the measurementsmore » were significantly below cloud top. We speculate that mixing of the entrained air near the cloud top may have indeed been inhomogeneous; but due to vertical circulation mixing, the correlation between V and L became positive at the measurement altitudes in mid-level of clouds, because during their descent, cloud droplets evaporate, faster in more diluted cloud parcels, leading to a positive correlation between V and L regardless of the mixing mechanism near the cloud top.« less

Effect of chemical admixtures on properties of high-calcium fly ash geopolymer

NASA Astrophysics Data System (ADS)

Rattanasak, Ubolluk; Pankhet, Kanokwan; Chindaprasirt, Prinya

2011-06-01

Owing to the high viscosity of sodium silicate solution, fly ash geopolymer has the problems of low workability and rapid setting time. Therefore, the effect of chemical admixtures on the properties of fly ash geopolymer was studied to overcome the rapid set of the geopolymer in this paper. High-calcium fly ash and alkaline solution were used as starting materials to synthesize the geopolymer. Calcium chloride, calcium sulfate, sodium sulfate, and sucrose at dosages of 1wt% and 2wt% of fly ash were selected as admixtures based on concrete knowledge to improve the properties of the geopolymer. The setting time, compressive strength, and degree of reaction were recorded, and the microstructure was examined. The results show that calcium chloride significantly shortens both the initial and final setting times of the geopolymer paste. In addition, sucrose also delays the final setting time significantly. The degrees of reaction of fly ash in the geopolymer paste with the admixtures are all higher than those of the control paste. This contributes to the obvious increases in compressive strength.

Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

NASA Technical Reports Server (NTRS)

Vu, Bruce; Oliveira, Justin

2011-01-01

This paper describes the Computation Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing test of the Taurus II launch vehicle. The finite rate chemistry is used to model the combustion process involving rocket propellant (RP 1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

Combustion Model of Supersonic Rocket Exhausts in an Entrained Flow Enclosure

NASA Technical Reports Server (NTRS)

Vu, Bruce T.; Oliveira, Justin

2011-01-01

This paper describes the Computational Fluid Dynamics (CFD) model developed to simulate the supersonic rocket exhaust in an entrained flow cylinder. The model can be used to study the plume-induced environment due to static firing tests of the Taurus-II launch vehicle. The finite-rate chemistry is used to model the combustion process involving rocket propellant (RP-1) and liquid oxidizer (LOX). A similar chemical reacting model is also used to simulate the mixing of rocket plume and ambient air. The model provides detailed information on the gas concentration and other flow parameters within the enclosed region, thus allowing different operating scenarios to be examined in an efficient manner. It is shown that the real gas influence is significant and yields better agreement with the theory.

Turbulence and entrainment length scales in large wind farms.

PubMed

Andersen, Søren J; Sørensen, Jens N; Mikkelsen, Robert F

2017-04-13

A number of large wind farms are modelled using large eddy simulations to elucidate the entrainment process. A reference simulation without turbines and three farm simulations with different degrees of imposed atmospheric turbulence are presented. The entrainment process is assessed using proper orthogonal decomposition, which is employed to detect the largest and most energetic coherent turbulent structures. The dominant length scales responsible for the entrainment process are shown to grow further into the wind farm, but to be limited in extent by the streamwise turbine spacing, which could be taken into account when developing farm layouts. The self-organized motion or large coherent structures also yield high correlations between the power productions of consecutive turbines, which can be exploited through dynamic farm control.This article is part of the themed issue 'Wind energy in complex terrains'. © 2017 The Author(s).

Turbulence and entrainment length scales in large wind farms

PubMed Central

2017-01-01

A number of large wind farms are modelled using large eddy simulations to elucidate the entrainment process. A reference simulation without turbines and three farm simulations with different degrees of imposed atmospheric turbulence are presented. The entrainment process is assessed using proper orthogonal decomposition, which is employed to detect the largest and most energetic coherent turbulent structures. The dominant length scales responsible for the entrainment process are shown to grow further into the wind farm, but to be limited in extent by the streamwise turbine spacing, which could be taken into account when developing farm layouts. The self-organized motion or large coherent structures also yield high correlations between the power productions of consecutive turbines, which can be exploited through dynamic farm control. This article is part of the themed issue ‘Wind energy in complex terrains’. PMID:28265028

Fish entrainment rates through towboat propellers in the Upper Mississippi and Illinois rivers

USGS Publications Warehouse

Jack, Killgore K.; Miranda, L.E.; Murphy, C.E.; Wolff, D.M.; Hoover, J.J.; Keevin, T.M.; Maynord, S.T.; Cornish, M.A.

2011-01-01

Aspecially designed netwas used to study fish entrainment and injury through towboat propellers in 13 pools of the Upper Mississippi and Illinois rivers. The net was attached to the stern of a 48.8-m-long towboat with twin propellers (in Kort propulsion nozzles), and sampling typically took place while the towboat pushed 15 loaded barges upstream at a time. In total, 254 entrainment samples over 894 km of the 13 study pools were collected. The sampling efforts produced 16,005 fish representing 15 families and at least 44 species; fish ranged in total length from 3 to 123 cm, but only 12.5-cm or longer fish were analyzed because smaller fish could escape through the mesh of the trawl. Clupeidae (68% of total catch) and Sciaenidae (21%) were the dominant families. We detected no effects of towboat operation variables (speed and engine [i.e., propeller] revolutions per minute [RPM]) on entrainment rate (i.e., fish/km), but entrainment rate showed a wedge-shaped distribution relative to hydraulic and geomorphic characteristics of the channel. Entrainment rate was low (30 fish/km). Although total entrainment rate was not related to engine RPM, the probability of being struck by a propeller increased with fish length and engine RPM. Limits on engine RPM in narrow, shallow, and sluggish reaches could reduce entrainment impact, particularly for large-bodied fish. ?? American Fisheries Society 2011.

Measurements of near-bed intra-wave sediment entrainment above vortex ripples

NASA Astrophysics Data System (ADS)

Thorne, Peter D.; Davies, Alan G.; Williams, Jon J.

2003-10-01

In general, descriptions of suspended sediment transport beneath surface waves are based on the turbulent diffusion concept. However, it is recognised that this approach is questionable for the suspension of sediment when the seabed is rippled. In this case, at least if the ripples are sufficiently steep, the entrainment process is likely to be well organised, and associated with vortex formation and shedding from the ripples. To investigate the entrainment process above ripples, a study was carried out in a large-scale wave flume facility. Utilising acoustic techniques, visualisations of the intra-wave sediment entrainment above vortex ripples have been generated. The observations provide a detailed description of entrainment, which is interpreted here in relation to the process of vortex formation and shedding. It is anticipated that such measurements will contribute to the development of improved physical process models of sediment transport in the rippled bed regime.

Entrainment of Juvenile and Adult American Shad at a Pumped Storage Facility

DOE PAGES

Mathur, Dilip; Heisey, Paul G.; Royer, Doug D.; ...

2017-12-13

The American Shad Alosa sapidissima has been targeted for restoration to the upper Susquehanna River, and entrainment losses at hydroelectric facilities on the river, including the Muddy Run Pumped Storage Facility, are of concern for the potential growth of the American Shad population. Based on the integration of pumping volume, time of entrainment, and literature–reported diel emigration of juvenile American Shad, the entrainment rate (N = 145; 53 exposed to pumping) was estimated at 3.5%. The entrainment rate for adults (N = 507) was estimated at 0.3–3.9%. Using multistate mark–recapture models, the estimated entrainment probabilities (Ψ) of radio–tagged juveniles weremore » higher during periods of extended pumping (>1 h; Ψ = 0.093; 95% confidence interval [CI] = 0.054–0.156) than at periods of no pumping or short–duration pumping (<1 h; Ψ < 0.0001; 95% CI = 0.0–0.001); the high extended pumping occurred between 2300 and 0600 hours. Entrainment probabilities for adults were low (Ψ < 0.02); the highest probability occurred for fish detected downstream of the intake during the peak portion of the run (Ψ = 0.015; 95% CI = 0.004–0.047). Entrainment probability for most adult fish did not differ from zero. The low values of Ψ for both life stages were attributed to (1) the deep location of the intake (intake ceiling >11.7 m below the water surface), (2) the surface orientation of American Shad (upper 3.1 m), (3) the low overlap between high–volume pumping and peak emigration/migration times, (4) the pumping volume relative to prevailing river flows, and (5) the prolonged, robust swimming speed of American Shad, particularly that of adults (>2.2 m/s), which exceeded the intake velocity (0.2–0.9 m/s). Entrainment of juveniles increased with co–occurrence of low incoming river flows, high pumping volume, and peak emigration times. Furthermore, quantification of migratory species’ entrainment at pumped storage facilities requires

Entrainment of Juvenile and Adult American Shad at a Pumped Storage Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathur, Dilip; Heisey, Paul G.; Royer, Doug D.

The American Shad Alosa sapidissima has been targeted for restoration to the upper Susquehanna River, and entrainment losses at hydroelectric facilities on the river, including the Muddy Run Pumped Storage Facility, are of concern for the potential growth of the American Shad population. Based on the integration of pumping volume, time of entrainment, and literature–reported diel emigration of juvenile American Shad, the entrainment rate (N = 145; 53 exposed to pumping) was estimated at 3.5%. The entrainment rate for adults (N = 507) was estimated at 0.3–3.9%. Using multistate mark–recapture models, the estimated entrainment probabilities (Ψ) of radio–tagged juveniles weremore » higher during periods of extended pumping (>1 h; Ψ = 0.093; 95% confidence interval [CI] = 0.054–0.156) than at periods of no pumping or short–duration pumping (<1 h; Ψ < 0.0001; 95% CI = 0.0–0.001); the high extended pumping occurred between 2300 and 0600 hours. Entrainment probabilities for adults were low (Ψ < 0.02); the highest probability occurred for fish detected downstream of the intake during the peak portion of the run (Ψ = 0.015; 95% CI = 0.004–0.047). Entrainment probability for most adult fish did not differ from zero. The low values of Ψ for both life stages were attributed to (1) the deep location of the intake (intake ceiling >11.7 m below the water surface), (2) the surface orientation of American Shad (upper 3.1 m), (3) the low overlap between high–volume pumping and peak emigration/migration times, (4) the pumping volume relative to prevailing river flows, and (5) the prolonged, robust swimming speed of American Shad, particularly that of adults (>2.2 m/s), which exceeded the intake velocity (0.2–0.9 m/s). Entrainment of juveniles increased with co–occurrence of low incoming river flows, high pumping volume, and peak emigration times. Furthermore, quantification of migratory species’ entrainment at pumped storage facilities requires

Cyclonic entrainment of preconditioned shelf waters into a frontal eddy

NASA Astrophysics Data System (ADS)

Everett, J. D.; Macdonald, H.; Baird, M. E.; Humphries, J.; Roughan, M.; Suthers, I. M.

2015-02-01

The volume transport of nutrient-rich continental shelf water into a cyclonic frontal eddy (entrainment) was examined from satellite observations, a Slocum glider and numerical simulation outputs. Within the frontal eddy, parcels of water with temperature/salinity signatures of the continental shelf (18-19°C and >35.5, respectively) were recorded. The distribution of patches of shelf water observed within the eddy was consistent with the spiral pattern shown within the numerical simulations. A numerical dye tracer experiment showed that the surface waters (≤50 m depth) of the frontal eddy are almost entirely (≥95%) shelf waters. Particle tracking experiments showed that water was drawn into the eddy from over 4° of latitude (30-34.5°S). Consistent with the glider observations, the modeled particles entrained into the eddy sunk relative to their initial position. Particles released south of 33°S, where the waters are cooler and denser, sunk 34 m deeper than their release position. Distance to the shelf was a critical factor in determining the volume of shelf water entrained into the eddy. Entrainment reduced to 0.23 Sv when the eddy was furthest from the shelf, compared to 0.61 Sv when the eddy was within 10 km of the shelf. From a biological perspective, quantifying the entrainment of shelf water into frontal eddies is important, as it is thought to play a significant role in providing an offshore nursery habitat for coastally spawned larval fish.

A Genomewide Admixture Mapping Panel for Hispanic/Latino Populations

PubMed Central

Mao, Xianyun ; Bigham, Abigail W. ; Mei, Rui ; Gutierrez, Gerardo ; Weiss, Ken M. ; Brutsaert, Tom D. ; Leon-Velarde, Fabiola ; Moore, Lorna G. ; Vargas, Enrique ; McKeigue, Paul M. ; Shriver, Mark D. ; Parra, Esteban J. 

2007-01-01

Admixture mapping (AM) is a promising method for the identification of genetic risk factors for complex traits and diseases showing prevalence differences among populations. Efficient application of this method requires the use of a genomewide panel of ancestry-informative markers (AIMs) to infer the population of origin of chromosomal regions in admixed individuals. Genomewide AM panels with markers showing high frequency differences between West African and European populations are already available for disease-gene discovery in African Americans. However, no such a map is yet available for Hispanic/Latino populations, which are the result of two-way admixture between Native American and European populations or of three-way admixture of Native American, European, and West African populations. Here, we report a genomewide AM panel with 2,120 AIMs showing high frequency differences between Native American and European populations. The average intermarker genetic distance is ∼1.7 cM. The panel was identified by genotyping, with the Affymetrix GeneChip Human Mapping 500K array, a population sample with European ancestry, a Mesoamerican sample comprising Maya and Nahua from Mexico, and a South American sample comprising Aymara/Quechua from Bolivia and Quechua from Peru. The main criteria for marker selection were both high information content for Native American/European ancestry (measured as the standardized variance of the allele frequencies, also known as “f value”) and small frequency differences between the Mesoamerican and South American samples. This genomewide AM panel will make it possible to apply AM approaches in many admixed populations throughout the Americas. PMID:17503334

Dependence of stratocumulus-topped boundary-layer entrainment on cloud-water sedimentation: Impact on global aerosol indirect effect in GISS ModelE3 single column model and global simulations

NASA Astrophysics Data System (ADS)

Ackerman, A. S.; Kelley, M.; Cheng, Y.; Fridlind, A. M.; Del Genio, A. D.; Bauer, S.

2017-12-01

Reduction in cloud-water sedimentation induced by increasing droplet concentrations has been shown in large-eddy simulations (LES) and direct numerical simulation (DNS) to enhance boundary-layer entrainment, thereby reducing cloud liquid water path and offsetting the Twomey effect when the overlying air is sufficiently dry, which is typical. Among recent upgrades to ModelE3, the latest version of the NASA Goddard Institute for Space Studies (GISS) general circulation model (GCM), are a two-moment stratiform cloud microphysics treatment with prognostic precipitation and a moist turbulence scheme that includes an option in its entrainment closure of a simple parameterization for the effect of cloud-water sedimentation. Single column model (SCM) simulations are compared to LES results for a stratocumulus case study and show that invoking the sedimentation-entrainment parameterization option indeed reduces the dependence of cloud liquid water path on increasing aerosol concentrations. Impacts of variations of the SCM configuration and the sedimentation-entrainment parameterization will be explored. Its impact on global aerosol indirect forcing in the framework of idealized atmospheric GCM simulations will also be assessed.

Ethnic Admixture Affects Diabetes Risk in Native Hawaiians: The Multiethnic Cohort

PubMed Central

Maskarinec, Gertraud; Morimoto, Yukiko; Jacobs, Simone; Grandinetti, Andrew; Mau, Marjorie K.; Kolonel, Laurence N.

2016-01-01

Background/Objectives Obesity and diabetes rates are high in Native Hawaiians (NH) who commonly have mixed ancestries. Persons of Asian ancestry experience a high risk of type 2 diabetes despite the relatively low body weight. We evaluated the impact of ethnic admixture on diabetes risk among NH in the Multiethnic Cohort (MEC). Methods/Subjects Based on self-reports, 11,521 eligible men and women were categorized into NH/white, NH/other, NH alone, NH/Asian, and the most common three ancestry admixture, NH/Chinese/white. Cox proportional hazard ratios (HRs) and 95% confidence intervals (CIs) were calculated with the NH/white category as the reference group; covariates included known confounders, i.e., body mass index (BMI), dietary and other life-style factors. Results The NH alone category had the highest proportion of overweight and obese individuals and the NH/Asian category the lowest proportion. During 12 years of follow-up after cohort entry at 56 years, 2,072 incident cases were ascertained through questionnaires and health plan linkages. All NH categories had higher HRs than the NH/white category before and after adjustment for BMI. In fully-adjusted models, the NH/Asian category showed the highest risk (HR=1.45; 95%CI: 1.27–1.65), followed by NH/other (HR=1.20; 95%CI: 1.03–1.39), NH/Chinese/white (HR=1.19; 95%CI: 1.04–1.37), and NH alone (HR=1.19; 95%CI: 1.03–1.37). The elevated risk by Asian admixture was more pronounced in normal weight than overweight/obese individuals. Conclusions These findings indicate that Asian admixture in NHs is associated with higher risk for type 2 diabetes independent of known risk factors and suggest a role for ethnicity-related genetic factors in the development of this disease. PMID:27026423

African Ancestry Analysis and Admixture Genetic Mapping for Proliferative Diabetic Retinopathy in African Americans.

PubMed

Tandon, Arti; Chen, Ching J; Penman, Alan; Hancock, Heather; James, Maurice; Husain, Deeba; Andreoli, Christopher; Li, Xiaohui; Kuo, Jane Z; Idowu, Omolola; Riche, Daniel; Papavasilieou, Evangelia; Brauner, Stacey; Smith, Sataria O; Hoadley, Suzanne; Richardson, Cole; Kieser, Troy; Vazquez, Vanessa; Chi, Cheryl; Fernandez, Marlene; Harden, Maegan; Cotch, Mary Frances; Siscovick, David; Taylor, Herman A; Wilson, James G; Reich, David; Wong, Tien Y; Klein, Ronald; Klein, Barbara E K; Rotter, Jerome I; Patterson, Nick; Sobrin, Lucia

2015-06-01

To examine the relationship between proportion of African ancestry (PAA) and proliferative diabetic retinopathy (PDR) and to identify genetic loci associated with PDR using admixture mapping in African Americans with type 2 diabetes (T2D). Between 1993 and 2013, 1440 participants enrolled in four different studies had fundus photographs graded using the Early Treatment Diabetic Retinopathy Study scale. Cases (n = 305) had PDR while controls (n = 1135) had nonproliferative diabetic retinopathy (DR) or no DR. Covariates included diabetes duration, hemoglobin A1C, systolic blood pressure, income, and education. Genotyping was performed on the Affymetrix platform. The association between PAA and PDR was evaluated using logistic regression. Genome-wide admixture scanning was performed using ANCESTRYMAP software. In the univariate analysis, PDR was associated with increased PAA (odds ratio [OR] = 1.36, 95% confidence interval [CI] = 1.16-1.59, P = 0.0002). In multivariate regression adjusting for traditional DR risk factors, income and education, the association between PAA and PDR was attenuated and no longer significant (OR = 1.21, 95% CI = 0.59-2.47, P = 0.61). For the admixture analyses, the maximum genome-wide score was 1.44 on chromosome 1. In this largest study of PDR in African Americans with T2D to date, an association between PAA and PDR is not present after adjustment for clinical, demographic, and socioeconomic factors. No genome-wide significant locus (defined as having a locus-genome statistic > 5) was identified with admixture analysis. Further analyses with even larger sample sizes are needed to definitively assess if any admixture signal for DR is present.

African Ancestry Analysis and Admixture Genetic Mapping for Proliferative Diabetic Retinopathy in African Americans

PubMed Central

Tandon, Arti; Chen, Ching J.; Penman, Alan; Hancock, Heather; James, Maurice; Husain, Deeba; Andreoli, Christopher; Li, Xiaohui; Kuo, Jane Z.; Idowu, Omolola; Riche, Daniel; Papavasilieou, Evangelia; Brauner, Stacey; Smith, Sataria O.; Hoadley, Suzanne; Richardson, Cole; Kieser, Troy; Vazquez, Vanessa; Chi, Cheryl; Fernandez, Marlene; Harden, Maegan; Cotch, Mary Frances; Siscovick, David; Taylor, Herman A.; Wilson, James G.; Reich, David; Wong, Tien Y.; Klein, Ronald; Klein, Barbara E. K.; Rotter, Jerome I.; Patterson, Nick; Sobrin, Lucia

2015-01-01

Purpose. To examine the relationship between proportion of African ancestry (PAA) and proliferative diabetic retinopathy (PDR) and to identify genetic loci associated with PDR using admixture mapping in African Americans with type 2 diabetes (T2D). Methods. Between 1993 and 2013, 1440 participants enrolled in four different studies had fundus photographs graded using the Early Treatment Diabetic Retinopathy Study scale. Cases (n = 305) had PDR while controls (n = 1135) had nonproliferative diabetic retinopathy (DR) or no DR. Covariates included diabetes duration, hemoglobin A1C, systolic blood pressure, income, and education. Genotyping was performed on the Affymetrix platform. The association between PAA and PDR was evaluated using logistic regression. Genome-wide admixture scanning was performed using ANCESTRYMAP software. Results. In the univariate analysis, PDR was associated with increased PAA (odds ratio [OR] = 1.36, 95% confidence interval [CI] = 1.16–1.59, P = 0.0002). In multivariate regression adjusting for traditional DR risk factors, income and education, the association between PAA and PDR was attenuated and no longer significant (OR = 1.21, 95% CI = 0.59–2.47, P = 0.61). For the admixture analyses, the maximum genome-wide score was 1.44 on chromosome 1. Conclusions. In this largest study of PDR in African Americans with T2D to date, an association between PAA and PDR is not present after adjustment for clinical, demographic, and socioeconomic factors. No genome-wide significant locus (defined as having a locus-genome statistic > 5) was identified with admixture analysis. Further analyses with even larger sample sizes are needed to definitively assess if any admixture signal for DR is present. PMID:26098467

Neural entrainment to the rhythmic structure of music.

PubMed

Tierney, Adam; Kraus, Nina

2015-02-01

The neural resonance theory of musical meter explains musical beat tracking as the result of entrainment of neural oscillations to the beat frequency and its higher harmonics. This theory has gained empirical support from experiments using simple, abstract stimuli. However, to date there has been no empirical evidence for a role of neural entrainment in the perception of the beat of ecologically valid music. Here we presented participants with a single pop song with a superimposed bassoon sound. This stimulus was either lined up with the beat of the music or shifted away from the beat by 25% of the average interbeat interval. Both conditions elicited a neural response at the beat frequency. However, although the on-the-beat condition elicited a clear response at the first harmonic of the beat, this frequency was absent in the neural response to the off-the-beat condition. These results support a role for neural entrainment in tracking the metrical structure of real music and show that neural meter tracking can be disrupted by the presentation of contradictory rhythmic cues.

Entrainment, Drizzle, and the Indirect Effect in Stratiform Clouds

NASA Technical Reports Server (NTRS)

Ackerman, Andrew

2005-01-01

Activation of some fraction of increased concentrations of sub-micron soluble aerosol particles lead to enhanced cloud droplet concentrations and hence smaller droplets, increasing their total cross sectional area and thus reflecting solar radiation more efficiently (the Twomey, or first indirect, effect). However, because of competition during condensational growth, droplet distributions tend to broaden as numbers increase, reducing the sensitivity of cloud albedo to droplet concentration on the order of 10%. Also, smaller droplets less effectively produce drizzle through collisions and coalescence, and it is widely expected (and found in large-scale models) that decreased precipitation leads to clouds with more cloud water on average (the so-called cloud lifetime, or second indirect, effect). Much of the uncertainty regarding the overall indirect aerosol effect stems from inadequate understanding of such changes in cloud water. Detailed simulations based on FIRE-I, ASTEX, and DYCOMS-II conditions show that suppression of precipitation from increased droplet concentrations leads to increased cloud water only when sufficient precipitation reaches the surface, a condition favored when the overlying air is-humid or droplet concentrations are very low. Otherwise, aerosol induced suppression of precipitation enhances entrainment of overlying dry air, thereby reducing cloud water and diminishing the indirect climate forcing.

Genomic Evidence of Widespread Admixture from Polar Bears into Brown Bears during the Last Ice Age.

PubMed

Cahill, James A; Heintzman, Peter D; Harris, Kelley; Teasdale, Matthew D; Kapp, Joshua; Soares, Andre E R; Stirling, Ian; Bradley, Daniel; Edwards, Ceiridwen J; Graim, Kiley; Kisleika, Aliaksandr A; Malev, Alexander V; Monaghan, Nigel; Green, Richard E; Shapiro, Beth

2018-05-01

Recent genomic analyses have provided substantial evidence for past periods of gene flow from polar bears (Ursus maritimus) into Alaskan brown bears (Ursus arctos), with some analyses suggesting a link between climate change and genomic introgression. However, because it has mainly been possible to sample bears from the present day, the timing, frequency, and evolutionary significance of this admixture remains unknown. Here, we analyze genomic DNA from three additional and geographically distinct brown bear populations, including two that lived temporally close to the peak of the last ice age. We find evidence of admixture in all three populations, suggesting that admixture between these species has been common in their recent evolutionary history. In addition, analyses of ten fossil bears from the now-extinct Irish population indicate that admixture peaked during the last ice age, whereas brown bear and polar bear ranges overlapped. Following this peak, the proportion of polar bear ancestry in Irish brown bears declined rapidly until their extinction. Our results support a model in which ice age climate change created geographically widespread conditions conducive to admixture between polar bears and brown bears, as is again occurring today. We postulate that this model will be informative for many admixing species pairs impacted by climate change. Our results highlight the power of paleogenomics to reveal patterns of evolutionary change that are otherwise masked in contemporary data.

Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture.

PubMed

Bhatia, Gaurav; Tandon, Arti; Patterson, Nick; Aldrich, Melinda C; Ambrosone, Christine B; Amos, Christopher; Bandera, Elisa V; Berndt, Sonja I; Bernstein, Leslie; Blot, William J; Bock, Cathryn H; Caporaso, Neil; Casey, Graham; Deming, Sandra L; Diver, W Ryan; Gapstur, Susan M; Gillanders, Elizabeth M; Harris, Curtis C; Henderson, Brian E; Ingles, Sue A; Isaacs, William; De Jager, Phillip L; John, Esther M; Kittles, Rick A; Larkin, Emma; McNeill, Lorna H; Millikan, Robert C; Murphy, Adam; Neslund-Dudas, Christine; Nyante, Sarah; Press, Michael F; Rodriguez-Gil, Jorge L; Rybicki, Benjamin A; Schwartz, Ann G; Signorello, Lisa B; Spitz, Margaret; Strom, Sara S; Tucker, Margaret A; Wiencke, John K; Witte, John S; Wu, Xifeng; Yamamura, Yuko; Zanetti, Krista A; Zheng, Wei; Ziegler, Regina G; Chanock, Stephen J; Haiman, Christopher A; Reich, David; Price, Alkes L

2014-10-02

The extent of recent selection in admixed populations is currently an unresolved question. We scanned the genomes of 29,141 African Americans and failed to find any genome-wide-significant deviations in local ancestry, indicating no evidence of selection influencing ancestry after admixture. A recent analysis of data from 1,890 African Americans reported that there was evidence of selection in African Americans after their ancestors left Africa, both before and after admixture. Selection after admixture was reported on the basis of deviations in local ancestry, and selection before admixture was reported on the basis of allele-frequency differences between African Americans and African populations. The local-ancestry deviations reported by the previous study did not replicate in our very large sample, and we show that such deviations were expected purely by chance, given the number of hypotheses tested. We further show that the previous study's conclusion of selection in African Americans before admixture is also subject to doubt. This is because the FST statistics they used were inflated and because true signals of unusual allele-frequency differences between African Americans and African populations would be best explained by selection that occurred in Africa prior to migration to the Americas. Copyright © 2014 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Dissecting the genetic structure and admixture of four geographical Malay populations

PubMed Central

Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; Janaka de Silva, H.; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R.; Teo, Yik-Ying; Xu, Shuhua

2015-01-01

The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%–62%), Proto-Malay (15%–31%), East Asian (4%–16%) and South Asian (3%–34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations. PMID:26395220

Dissecting the genetic structure and admixture of four geographical Malay populations.

PubMed

Deng, Lian; Hoh, Boon-Peng; Lu, Dongsheng; Saw, Woei-Yuh; Twee-Hee Ong, Rick; Kasturiratne, Anuradhani; de Silva, H Janaka; Zilfalil, Bin Alwi; Kato, Norihiro; Wickremasinghe, Ananda R; Teo, Yik-Ying; Xu, Shuhua

2015-09-23

The Malay people are an important ethnic composition in Southeast Asia, but their genetic make-up and population structure remain poorly studied. Here we conducted a genome-wide study of four geographical Malay populations: Peninsular Malaysian Malay (PMM), Singaporean Malay (SGM), Indonesian Malay (IDM) and Sri Lankan Malay (SLM). All the four Malay populations showed substantial admixture with multiple ancestries. We identified four major ancestral components in Malay populations: Austronesian (17%-62%), Proto-Malay (15%-31%), East Asian (4%-16%) and South Asian (3%-34%). Approximately 34% of the genetic makeup of SLM is of South Asian ancestry, resulting in its distinct genetic pattern compared with the other three Malay populations. Besides, substantial differentiation was observed between the Malay populations from the north and the south, and between those from the west and the east. In summary, this study revealed that the genetic identity of the Malays comprises a mixed entity of multiple ancestries represented by Austronesian, Proto-Malay, East Asian and South Asian, with most of the admixture events estimated to have occurred 175 to 1,500 years ago, which in turn suggests that geographical isolation and independent admixture have significantly shaped the genetic architectures and the diversity of the Malay populations.

Analysis and numerical simulation of a laboratory analog of radiatively induced cloud-top entrainment.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerstein, Alan R.; Sayler, Bentley J.; Wunsch, Scott Edward

2010-11-01

Numerical simulations using the One-Dimensional-Turbulence model are compared to water-tank measurements [B. J. Sayler and R. E. Breidenthal, J. Geophys. Res. 103 (D8), 8827 (1998)] emulating convection and entrainment in stratiform clouds driven by cloud-top cooling. Measured dependences of the entrainment rate on Richardson number, molecular transport coefficients, and other experimental parameters are reproduced. Additional parameter variations suggest more complicated dependences of the entrainment rate than previously anticipated. A simple algebraic model indicates the ways in which laboratory and cloud entrainment behaviors might be similar and different.

Chemical, Mechanical, and Durability Properties of Concrete with Local Mineral Admixtures under Sulfate Environment in Northwest China.

PubMed

Nie, Qingke; Zhou, Changjun; Shu, Xiang; He, Qiang; Huang, Baoshan

2014-05-13

Over the vast Northwest China, arid desert contains high concentrations of sulfate, chloride, and other chemicals in the ground water, which poses serious challenges to infrastructure construction that routinely utilizes portland cement concrete. Rapid industrialization in the region has been generating huge amounts of mineral admixtures, such as fly ash and slags from energy and metallurgical industries. These industrial by-products would turn into waste materials if not utilized in time. The present study evaluated the suitability of utilizing local mineral admixtures in significant quantities for producing quality concrete mixtures that can withstand the harsh chemical environment without compromising the essential mechanical properties. Comprehensive chemical, mechanical, and durability tests were conducted in the laboratory to characterize the properties of the local cementitious mineral admixtures, cement mortar and portland cement concrete mixtures containing these admixtures. The results from this study indicated that the sulfate resistance of concrete was effectively improved by adding local class F fly ash and slag, or by applying sulfate resistance cement to the mixtures. It is noteworthy that concrete containing local mineral admixtures exhibited much lower permeability (in terms of chloride ion penetration) than ordinary portland cement concrete while retaining the same mechanical properties; whereas concrete mixtures made with sulfate resistance cement had significantly reduced strength and much increased chloride penetration comparing to the other mixtures. Hence, the use of local mineral admixtures in Northwest China in concrete mixtures would be beneficial to the performance of concrete, as well as to the protection of environment.

Chemical, Mechanical, and Durability Properties of Concrete with Local Mineral Admixtures under Sulfate Environment in Northwest China

PubMed Central

Nie, Qingke; Zhou, Changjun; Shu, Xiang; He, Qiang; Huang, Baoshan

2014-01-01

Over the vast Northwest China, arid desert contains high concentrations of sulfate, chloride, and other chemicals in the ground water, which poses serious challenges to infrastructure construction that routinely utilizes portland cement concrete. Rapid industrialization in the region has been generating huge amounts of mineral admixtures, such as fly ash and slags from energy and metallurgical industries. These industrial by-products would turn into waste materials if not utilized in time. The present study evaluated the suitability of utilizing local mineral admixtures in significant quantities for producing quality concrete mixtures that can withstand the harsh chemical environment without compromising the essential mechanical properties. Comprehensive chemical, mechanical, and durability tests were conducted in the laboratory to characterize the properties of the local cementitious mineral admixtures, cement mortar and portland cement concrete mixtures containing these admixtures. The results from this study indicated that the sulfate resistance of concrete was effectively improved by adding local class F fly ash and slag, or by applying sulfate resistance cement to the mixtures. It is noteworthy that concrete containing local mineral admixtures exhibited much lower permeability (in terms of chloride ion penetration) than ordinary portland cement concrete while retaining the same mechanical properties; whereas concrete mixtures made with sulfate resistance cement had significantly reduced strength and much increased chloride penetration comparing to the other mixtures. Hence, the use of local mineral admixtures in Northwest China in concrete mixtures would be beneficial to the performance of concrete, as well as to the protection of environment. PMID:28788648

Improved particle impactor assembly for size selective high volume air sampler

DOEpatents

Langer, G.

1987-03-23

Air containing entrained particulate matter is directed through a plurality of parallel, narrow, vertically oriented apertures of an inlet element toward an adjacently located, relatively large, dust impaction surface preferably covered with an adhesive material. The air flow turns over the impaction surface, leaving behind, the relatively larger particles and passes through two elongate apertures defining the outer bounds of the impaction collection surface to pass through divergent passages which slow down and distribute the air flow, with entrained smaller particles, over a fine filter element that separates the fine particles from the air. By appropriate selection of dimensions and the number of inlet apertures air flow through the inlet element is provided a nonuniform velocity distribution with the lower velocities being obtained near the center of the inlet apertures, to separate out particles larger than a certain predetermined size on the impaction collection surface. The impaction collection surface, even in a moderately sized apparatus, is thus relatively large and permits the prolonged sampling of air for periods extending to four weeks. 6 figs.

Admixture facilitates genetic adaptations to high altitude in Tibet

PubMed Central

Jeong, Choongwon; Alkorta-Aranburu, Gorka; Basnyat, Buddha; Neupane, Maniraj; Witonsky, David B.; Pritchard, Jonathan K.; Beall, Cynthia M.; Di Rienzo, Anna

2015-01-01

Admixture is recognized as a widespread feature of human populations, renewing interest in the possibility that genetic exchange can facilitate adaptations to new environments. Studies of Tibetans revealed candidates for high-altitude adaptations in the EGLN1 and EPAS1 genes, associated with lower hemoglobin concentration. However, the history of these variants or that of Tibetans remains poorly understood. Here, we analyze genotype data for the Nepalese Sherpa, and find that Tibetans are a mixture of ancestral populations related to the Sherpa and Han Chinese. EGLN1 and EPAS1 genes show a striking enrichment of high-altitude ancestry in the Tibetan genome, indicating that migrants from low altitude acquired adaptive alleles from the highlanders. Accordingly, the Sherpa and Tibetans share adaptive hemoglobin traits. This admixture-mediated adaptation shares important features with adaptive introgression. Therefore, we identify a novel mechanism, beyond selection on new mutations or on standing variation, through which populations can adapt to local environments. PMID:24513612

Neural Entrainment to Rhythmically Presented Auditory, Visual, and Audio-Visual Speech in Children

PubMed Central

Power, Alan James; Mead, Natasha; Barnes, Lisa; Goswami, Usha

2012-01-01

Auditory cortical oscillations have been proposed to play an important role in speech perception. It is suggested that the brain may take temporal “samples” of information from the speech stream at different rates, phase resetting ongoing oscillations so that they are aligned with similar frequency bands in the input (“phase locking”). Information from these frequency bands is then bound together for speech perception. To date, there are no explorations of neural phase locking and entrainment to speech input in children. However, it is clear from studies of language acquisition that infants use both visual speech information and auditory speech information in learning. In order to study neural entrainment to speech in typically developing children, we use a rhythmic entrainment paradigm (underlying 2 Hz or delta rate) based on repetition of the syllable “ba,” presented in either the auditory modality alone, the visual modality alone, or as auditory-visual speech (via a “talking head”). To ensure attention to the task, children aged 13 years were asked to press a button as fast as possible when the “ba” stimulus violated the rhythm for each stream type. Rhythmic violation depended on delaying the occurrence of a “ba” in the isochronous stream. Neural entrainment was demonstrated for all stream types, and individual differences in standardized measures of language processing were related to auditory entrainment at the theta rate. Further, there was significant modulation of the preferred phase of auditory entrainment in the theta band when visual speech cues were present, indicating cross-modal phase resetting. The rhythmic entrainment paradigm developed here offers a method for exploring individual differences in oscillatory phase locking during development. In particular, a method for assessing neural entrainment and cross-modal phase resetting would be useful for exploring developmental learning difficulties thought to involve temporal

Three-dimensional modeling of air flow and pollutant dispersion in an urban street canyon with thermal effects.

PubMed

Tsai, Mong-Yu; Chen, Kang-Shin; Wu, Chung-Hsing

2005-08-01

Effects of excess ground and building temperatures on airflow and dispersion of pollutants in an urban street canyon with an aspect ratio of 0.8 and a length-to-width ratio of 3 were investigated numerically. Three-dimensional governing equations of mass, momentum, energy, and species were modeled using the RNG k-epsilon turbulence model and Boussinesq approximation, which were solved using the finite volume method. Vehicle emissions were estimated from the measured traffic flow rates and modeled as banded line sources, with a street length and bandwidths equal to typical vehicle widths. Both measurements and simulations reveal that pollutant concentrations typically follow the traffic flow rate; they decline as the height increases and are higher on the leeward side than on the windward side. Three-dimensional simulations reveal that the vortex line, joining the centers of cross-sectional vortexes of the street canyon, meanders between street buildings and shifts toward the windward side when heating strength is increased. Thermal boundary layers are very thin. Entrainment of outside air increases, and pollutant concentration decreases with increasing heating condition. Also, traffic-produced turbulence enhances the turbulent kinetic energy and the mixing of temperature and admixtures in the canyon. Factors affecting the inaccuracy of the simulations are addressed.

Role of entrainment in convectively-coupled equatorial waves in an aquaplanet model

NASA Astrophysics Data System (ADS)

Peatman, Simon; Methven, John; Woolnough, Steve

2016-04-01

Equatorially-trapped waves are known to be one of the key phenomena in determining the distribution of convective precipitation in the tropics as well as being crucial to the dynamics of the Madden-Julian Oscillation. However, numerical weather prediction models struggle to sustain such waves for a realistic length of time, which has a significant impact on forecasting precipitation for regions such as equatorial Africa. It has been found in the past that enhancing the rate of moisture entrainment can improve certain aspects of parametrized tropical convection in climate models. A parameter F controls the rate of entrainment into the convective plume for deep- and mid-level convection, with F = 1 denoting the control case. Here it is found in an aquaplanet simulation that F > 1 produces more convective precipitation at all zonal wavenumbers. Furthermore, Kelvin wave activity increases for waves with low frequency and zonal wavenumber but is slightly suppressed for shorter, higher-frequency waves, and vice versa for westward-propagating waves. A change in entrainment rate also brings about a change in the basic state wind and humidity fields. Therefore, the question arises as to whether changes in wave activity are due directly to changes in the coupling to the humidity in the waves by entrainment or due to changes in the basic state. An experiment was devised in which the convective parametrization scheme is allowed to entrain a weighted sum of the environmental humidity and a prescribed zonally-symmetric climatology, with a parameter α controlling the extent of the decoupling from the environment. Experiments with this new mechanism in the parametrization scheme reveal a complex relationship. For long waves at low frequency (period > ˜13 days), removing zonal asymmetry in the humidity seen by the entrainment scheme has very little influence on the ratio of eastward- to westward-propagating power. At higher frequencies and zonal wavenumbers, removing this zonal

Passive scalar entrainment and mixing in a forced, spatially-developing mixing layer

NASA Technical Reports Server (NTRS)

Lowery, P. S.; Reynolds, W. C.; Mansour, N. N.

1987-01-01

Numerical simulations are performed for the forced, spatially-developing plane mixing layer in two and three dimensions. Transport of a passive scalar field is included in the computation. This, together with the allowance for spatial development in the simulations, affords the opportunity for study of the asymmetric entrainment of irrotational fluid into the layer. The inclusion of a passive scalar field provides a means for simulating the effect of this entrainment asymmetry on the generation of 'products' from a 'fast' chemical reaction. Further, the three-dimensional simulations provide useful insight into the effect of streamwise structures on these entrainment and 'fast' reaction processes. Results from a two-dimensional simulation indicate 1.22 parts high-speed fluid are entrained for every one part low-speed fluid. Inclusion of streamwise vortices at the inlet plane of a three-dimensional simulation indicate a further increase in asymmetric entrainment - 1.44:1. Results from a final three-dimensional simulation are presented. In this case, a random velocity perturbation is imposed at the inlet plane. The results indicate the 'natural' development of the large spanwise structures characteristic of the mixing layer.

Getting the beat: entrainment of brain activity by musical rhythm and pleasantness.

PubMed

Trost, Wiebke; Frühholz, Sascha; Schön, Daniele; Labbé, Carolina; Pichon, Swann; Grandjean, Didier; Vuilleumier, Patrik

2014-12-01

Rhythmic entrainment is an important component of emotion induction by music, but brain circuits recruited during spontaneous entrainment of attention by music and the influence of the subjective emotional feelings evoked by music remain still largely unresolved. In this study we used fMRI to test whether the metric structure of music entrains brain activity and how music pleasantness influences such entrainment. Participants listened to piano music while performing a speeded visuomotor detection task in which targets appeared time-locked to either strong or weak beats. Each musical piece was presented in both a consonant/pleasant and dissonant/unpleasant version. Consonant music facilitated target detection and targets presented synchronously with strong beats were detected faster. FMRI showed increased activation of bilateral caudate nucleus when responding on strong beats, whereas consonance enhanced activity in attentional networks. Meter and consonance selectively interacted in the caudate nucleus, with greater meter effects during dissonant than consonant music. These results reveal that the basal ganglia, involved both in emotion and rhythm processing, critically contribute to rhythmic entrainment of subcortical brain circuits by music. Copyright © 2014 Elsevier Inc. All rights reserved.

microRNA modulation of circadian clock period and entrainment

PubMed Central

Cheng, Hai-Ying M.; Papp, Joseph W.; Varlamova, Olga; Dziema, Heather; Russell, Brandon; Curfman, John P.; Nakazawa, Takanobu; Shimizu, Kimiko; Okamura, Hitoshi; Impey, Soren; Obrietan, Karl

2007-01-01

microRNAs (miRNAs) are a class of small, non-coding, RNAs that regulate the stability or translation of mRNA transcripts. Although recent work has implicated miRNAs in development and in disease, the expression and function of miRNAs in the adult mammalian nervous system has not been extensively characterized. Here, we examine the role of two brain-specific miRNAs, miR-219 and miR-132, in modulating the circadian clock located in the suprachiasmatic nucleus. miR-219 is a target of the CLOCK/BMAL1 complex, exhibits robust circadian rhythms of expression and the in vivo knockdown of miR-219 lengthens the circadian period. miR-132 is induced by photic entrainment cues via a MAPK/CREB-dependent mechanism, modulates clock gene expression, and attenuates the entraining effects of light. Collectively, these data reveal miRNAs as clock- and light-regulated genes and provide a mechanistic examination of their roles as effectors of pacemaker activity and entrainment. PMID:17553428

Repair of Corrosion in Air Supply Piping at the NASA Glenn Research Center's 1 by 1 Foot Supersonic Wind Tunnel

NASA Technical Reports Server (NTRS)

Henry, Michael

2000-01-01

During a test at the NASA Glenn Research Center's 1 x 1 Supersonic Wing Tunnel, it was discovered that particles entrained in the air flow were damaging the pressure sensitive paint on a test article. An investigation found the source of the entrained particles to be rust on the internal surfaces of the air supply piping. To remedy the situation, the air supply line components made from carbon steel were either refurbished or replaced with new stainless steel components. The refurbishment process included various combinations of chemical cleaning, bead blasting, painting and plating.

The scale and nature of Viking settlement in Ireland from Y-chromosome admixture analysis.

PubMed

McEvoy, Brian; Brady, Claire; Moore, Laoise T; Bradley, Daniel G

2006-12-01

The Vikings (or Norse) played a prominent role in Irish history but, despite this, their genetic legacy in Ireland, which may provide insights into the nature and scale of their immigration, is largely unexplored. Irish surnames, some of which are thought to have Norse roots, are paternally inherited in a similar manner to Y-chromosomes. The correspondence of Scandinavian patrilineal ancestry in a cohort of Irish men bearing surnames of putative Norse origin was examined using both slow mutating unique event polymorphisms and relatively rapidly changing short tandem repeat Y-chromosome markers. Irish and Scandinavian admixture proportions were explored for both systems using six different admixture estimators, allowing a parallel investigation of the impact of method and marker type in Y-chromosome admixture analysis. Admixture proportion estimates in the putative Norse surname group were highly consistent and detected little trace of Scandinavian ancestry. In addition, there is scant evidence of Scandinavian Y-chromosome introgression in a general Irish population sample. Although conclusions are largely dependent on the accurate identification of Norse surnames, the findings are consistent with a relatively small number of Norse settlers (and descendents) migrating to Ireland during the Viking period (ca. AD 800-1200) suggesting that Norse colonial settlements might have been largely composed of indigenous Irish. This observation adds to previous genetic studies that point to a flexible Viking settlement approach across North Atlantic Europe.

Speech entrainment enables patients with Broca’s aphasia to produce fluent speech

PubMed Central

Hubbard, H. Isabel; Hudspeth, Sarah Grace; Holland, Audrey L.; Bonilha, Leonardo; Fromm, Davida; Rorden, Chris

2012-01-01

A distinguishing feature of Broca’s aphasia is non-fluent halting speech typically involving one to three words per utterance. Yet, despite such profound impairments, some patients can mimic audio-visual speech stimuli enabling them to produce fluent speech in real time. We call this effect ‘speech entrainment’ and reveal its neural mechanism as well as explore its usefulness as a treatment for speech production in Broca’s aphasia. In Experiment 1, 13 patients with Broca’s aphasia were tested in three conditions: (i) speech entrainment with audio-visual feedback where they attempted to mimic a speaker whose mouth was seen on an iPod screen; (ii) speech entrainment with audio-only feedback where patients mimicked heard speech; and (iii) spontaneous speech where patients spoke freely about assigned topics. The patients produced a greater variety of words using audio-visual feedback compared with audio-only feedback and spontaneous speech. No difference was found between audio-only feedback and spontaneous speech. In Experiment 2, 10 of the 13 patients included in Experiment 1 and 20 control subjects underwent functional magnetic resonance imaging to determine the neural mechanism that supports speech entrainment. Group results with patients and controls revealed greater bilateral cortical activation for speech produced during speech entrainment compared with spontaneous speech at the junction of the anterior insula and Brodmann area 47, in Brodmann area 37, and unilaterally in the left middle temporal gyrus and the dorsal portion of Broca’s area. Probabilistic white matter tracts constructed for these regions in the normal subjects revealed a structural network connected via the corpus callosum and ventral fibres through the extreme capsule. Unilateral areas were connected via the arcuate fasciculus. In Experiment 3, all patients included in Experiment 1 participated in a 6-week treatment phase using speech entrainment to improve speech production

Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World.

PubMed

Watkins, W Scott; Xing, Jinchuan; Huff, Chad; Witherspoon, David J; Zhang, Yuhua; Perego, Ugo A; Woodward, Scott R; Jorde, Lynn B

2012-05-20

Populations of the Americas were founded by early migrants from Asia, and some have experienced recent genetic admixture. To better characterize the native and non-native ancestry components in populations from the Americas, we analyzed 815,377 autosomal SNPs, mitochondrial hypervariable segments I and II, and 36 Y-chromosome STRs from 24 Mesoamerican Totonacs and 23 South American Bolivians. We analyzed common genomic regions from native Bolivian and Totonac populations to identify 324 highly predictive Native American ancestry informative markers (AIMs). As few as 40-50 of these AIMs perform nearly as well as large panels of random genome-wide SNPs for predicting and estimating Native American ancestry and admixture levels. These AIMs have greater New World vs. Old World specificity than previous AIMs sets. We identify highly-divergent New World SNPs that coincide with high-frequency haplotypes found at similar frequencies in all populations examined, including the HGDP Pima, Maya, Colombian, Karitiana, and Surui American populations. Some of these regions are potential candidates for positive selection. European admixture in the Bolivian sample is approximately 12%, though individual estimates range from 0-48%. We estimate that the admixture occurred ~360-384 years ago. Little evidence of European or African admixture was found in Totonac individuals. Bolivians with pre-Columbian mtDNA and Y-chromosome haplogroups had 5-30% autosomal European ancestry, demonstrating the limitations of Y-chromosome and mtDNA haplogroups and the need for autosomal ancestry informative markers for assessing ancestry in admixed populations.

Positive feedback and momentum growth during debris-flow entrainment of wet bed sediment

USGS Publications Warehouse

Iverson, R.M.; Reid, M.E.; Logan, M.; LaHusen, R.G.; Godt, J.W.; Griswold, J.P.

2011-01-01

Debris flows typically occur when intense rainfall or snowmelt triggers landslides or extensive erosion on steep, debris-mantled slopes. The flows can then grow dramatically in size and speed as they entrain material from their beds and banks, but the mechanism of this growth is unclear. Indeed, momentum conservation implies that entrainment of static material should retard the motion of the flows if friction remains unchanged. Here we use data from large-scale experiments to assess the entrainment of bed material by debris flows. We find that entrainment is accompanied by increased flow momentum and speed only if large positive pore pressures develop in wet bed sediments as the sediments are overridden by debris flows. The increased pore pressure facilitates progressive scour of the bed, reduces basal friction and instigates positive feedback that causes flow speed, mass and momentum to increase. If dryer bed sediment is entrained, however, the feedback becomes negative and flow momentum declines. We infer that analogous feedbacks could operate in other types of gravity-driven mass flow that interact with erodible beds. ?? 2011 Macmillan Publishers Limited. All rights reserved.

Neural entrainment to rhythmic speech in children with developmental dyslexia

PubMed Central

Power, Alan J.; Mead, Natasha; Barnes, Lisa; Goswami, Usha

2013-01-01

A rhythmic paradigm based on repetition of the syllable “ba” was used to study auditory, visual, and audio-visual oscillatory entrainment to speech in children with and without dyslexia using EEG. Children pressed a button whenever they identified a delay in the isochronous stimulus delivery (500 ms; 2 Hz delta band rate). Response power, strength of entrainment and preferred phase of entrainment in the delta and theta frequency bands were compared between groups. The quality of stimulus representation was also measured using cross-correlation of the stimulus envelope with the neural response. The data showed a significant group difference in the preferred phase of entrainment in the delta band in response to the auditory and audio-visual stimulus streams. A different preferred phase has significant implications for the quality of speech information that is encoded neurally, as it implies enhanced neuronal processing (phase alignment) at less informative temporal points in the incoming signal. Consistent with this possibility, the cross-correlogram analysis revealed superior stimulus representation by the control children, who showed a trend for larger peak r-values and significantly later lags in peak r-values compared to participants with dyslexia. Significant relationships between both peak r-values and peak lags were found with behavioral measures of reading. The data indicate that the auditory temporal reference frame for speech processing is atypical in developmental dyslexia, with low frequency (delta) oscillations entraining to a different phase of the rhythmic syllabic input. This would affect the quality of encoding of speech, and could underlie the cognitive impairments in phonological representation that are the behavioral hallmark of this developmental disorder across languages. PMID:24376407

Laboratory simulations of cumulus cloud flows explain the entrainment anomaly

NASA Astrophysics Data System (ADS)

Narasimha, Roddam; Diwan, Sourabh S.; Subrahmanyam, Duvvuri; Sreenivas, K. R.; Bhat, G. S.

2010-11-01

In the present laboratory experiments, cumulus cloud flows are simulated by starting plumes and jets subjected to off-source heat addition in amounts that are dynamically similar to latent heat release due to condensation in real clouds. The setup permits incorporation of features like atmospheric inversion layers and the active control of off-source heat addition. Herein we report, for the first time, simulation of five different cumulus cloud types (and many shapes), including three genera and three species (WMO Atlas 1987), which show striking resemblance to real clouds. It is known that the rate of entrainment in cumulus cloud flows is much less than that in classical plumes - the main reason for the failure of early entrainment models. Some of the previous studies on steady-state jets and plumes (done in a similar setup) have attributed this anomaly to the disruption of the large-scale turbulent structures upon the addition of off-source heat. We present estimates of entrainment coefficients from these measurements which show a qualitatively consistent variation with height. We propose that this explains the observed entrainment anomaly in cumulus clouds; further experiments are planned to address this question in the context of starting jets and plumes.

Entrainment at a sediment concentration interface in turbulent channel flow

NASA Astrophysics Data System (ADS)

Salinas, Jorge; Shringarpure, Mrugesh; Cantero, Mariano; Balachandar, S.

2016-11-01

In this work we address the role of turbulence on entrainment at a sediment concentration interface. This process can be conceived as the entrainment of sediment-free fluid into the bottom sediment-laden flow, or alternatively, as the entrainment of sediment into the top sediment-free flow. We have performed direct numerical simulations for fixed Reynolds and Schmidt numbers while varying the values of Richardson number and particle settling velocity. The analysis performed shows that the ability of the flow to pick up a given sediment size decreases with the distance from the bottom, and thus only fine enough sediment particles are entrained across the sediment concentration interface. For these cases, the concentration profiles evolve to a final steady state in good agreement with the well-known Rouse profile. The approach towards the Rouse profile happens through a transient self-similar state. Detailed analysis of the three dimensional structure of the sediment concentration interface shows the mechanisms by which sediment particles are lifted up by tongues of sediment-laden fluid with positive correlation between vertical velocity and sediment concentration. Finally, the mixing ability of the flow is addressed by monitoring the center of mass of the sediment-laden layer. With the support of ExxonMobil, NSF, ANPCyT, CONICET.

The neurochemical basis of photic entrainment of the circadian pacemaker

NASA Technical Reports Server (NTRS)

Rea, Michael A.; Buckley, Becky; Lutton, Lewis M.

1992-01-01

Circadian rhythmicity in mammals is controlled by the action of a light-entrainable hypothalamus, in association with two cell clusters known as the supra chiasmatic nuclei (SCN). In the absence of temporal environmental clues, this pacemaker continues to measure time by an endogenous mechanism (clock), driving biochemical, physiological, and behavioral rhythms that reflect the natural period of the pacemaker oscillation. This endogenous period usually differs slightly from 24 hours (i.e., circadian). When mammals are maintained under a 24 hour light-dark (LD) cycle, the pacemaker becomes entrained such that the period of the pacemaker oscillation matches that of the LD cycle. Potentially entraining photic information is conveyed to the SCN via a direct retinal projection, the retinohypothalamic tract (RHT). RHT neurotransmission is thought to be mediated by the release of excitatory amino acids (EAA) in the SCN. In support of this hypothesis, recent experiments using nocturnal rodents have shown that EAA antagonists block the effects of light on pacemaker-driven behavioral rhythms, and attenuate light induced gene expression in SCN cells. An understanding of the neurochemical basis of the photic entrainment process would facilitate the development of pharmacological strategies for maintaining synchrony among shift workers in environments, such as the Space Station, which provide unreliable or conflicting temporal photic clues.

Method of making an air electrode material having controlled sinterability

DOEpatents

Vasilow, T.R.; Kuo, L.J.H.; Ruka, R.J.

1994-08-30

A tubular, porous ceramic electrode structure is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte, substantially surrounds the air electrode, and a porous outer fuel electrode substantially surrounds the electrolyte, to form a fuel cell. 2 figs.

Uncertainty associated with convective wet removal of entrained aerosols in a global climate model

NASA Astrophysics Data System (ADS)

Croft, B.; Pierce, J. R.; Martin, R. V.; Hoose, C.; Lohmann, U.

2012-11-01

The uncertainties associated with the wet removal of aerosols entrained above convective cloud bases are investigated in a global aerosol-climate model (ECHAM5-HAM) under a set of limiting assumptions for the wet removal of the entrained aerosols. The limiting assumptions for the wet removal of entrained aerosols are negligible scavenging and vigorous scavenging (either through activation, with size-dependent impaction scavenging, or with the prescribed fractions of the standard model). To facilitate this process-based study, an explicit representation of cloud-droplet-borne and ice-crystal-borne aerosol mass and number, for the purpose of wet removal, is introduced into the ECHAM5-HAM model. This replaces and is compared with the prescribed cloud-droplet-borne and ice-crystal-borne aerosol fraction scavenging scheme of the standard model. A 20% to 35% uncertainty in simulated global, annual mean aerosol mass burdens and optical depth (AOD) is attributed to different assumptions for the wet removal of aerosols entrained above convective cloud bases. Assumptions about the removal of aerosols entrained above convective cloud bases control modeled upper tropospheric aerosol concentrations by as much as one order of magnitude. Simulated aerosols entrained above convective cloud bases contribute 20% to 50% of modeled global, annual mean aerosol mass convective wet deposition (about 5% to 10% of the total dry and wet deposition), depending on the aerosol species, when including wet scavenging of those entrained aerosols (either by activation, size-dependent impaction, or with the prescribed fraction scheme). Among the simulations, the prescribed fraction and size-dependent impaction schemes yield the largest global, annual mean aerosol mass convective wet deposition (by about two-fold). However, the prescribed fraction scheme has more vigorous convective mixed-phase wet removal (by two to five-fold relative to the size-dependent impaction scheme) since nearly all

AW-101 entrained solids - Solubility versus temperature

DOE Office of Scientific and Technical Information (OSTI.GOV)

GJ Lumetta; RC Lettau; GF Piepel

This report describes the results of a test conducted by Battelle to assess the solubility of the solids entrained in the diluted AW-101 low-activity waste (LAW) sample. BNFL requested Battelle to dilute the AW-1-1 sample using de-ionized water to mimic expected plant operating conditions. BNFL further requested Battelle to assess the solubility of the solids present in the diluted AW-101 sample versus temperature conditions of 30, 40, and 50 C. BNFL requested these tests to assess the composition of the LAW supernatant and solids versus expected plant-operating conditions. The work was conducted according to test plan BNFL-TP-29953-7, Rev. 0, Determinationmore » of the Solubility of LAW Entrained Solids. The test went according to plan, with no deviations from the test plan.« less

The influence of Kr, CO2, and iso-C4H8 admixtures on the time of the formation of a stable flame front in mixtures of natural gas and isobutylene with oxygen and hydrogen with air under initiation with a spark discharge

NASA Astrophysics Data System (ADS)

Rubtsov, N. M.; Seplyarskii, B. S.; Chernysh, V. I.; Tsvetkov, G. I.

2010-05-01

High-speed color filming was used to study laminar spherical flame propagation at the initial stage in preliminarily mixed stoichiometric mixtures of natural gas and isobutylene with oxygen containing krypton and carbon dioxide and in hydrogen-air mixtures at atmospheric pressure in a bomb with a constant volume. Under experimental conditions ( T 0 = 298 K, p 0 = 100 torr, spark discharge energy E 0 = 0.91 J), the dilution of mixtures with Kr and CO2 increased the time of formation of a stable flame front by more than 10 times. The introduction of a small chemically active admixture (1.2% isobutylene) into a stoichiometric mixture of hydrogen and air sharply increased the time of formation of a stable flame front, which was evidence of an important role played by the chemical mechanism of the reaction in the formation of the combustion field.

Genetic admixture of eight Mexican indigenous populations: based on five polymarker, HLA-DQA1, ABO, and RH loci.

PubMed

Buentello-Malo, Leonora; Peñaloza-Espinosa, Rosenda I; Salamanca-Gómez, Fabio; Cerda-Flores, Ricardo M

2008-01-01

This study explores the genetic admixture of eight Mexican indigenous populations (Otomi-Ixmiquilpan, Otomi-Actopan, Tzeltales, Nahua-Milpa-Alta, Nahua-Xochimilco, Nahua-Zitlala, Nahua-Ixhuatlancillo, and Nahua-Coyolillo) on the basis of five PCR-based polymorphic DNA loci (LDLR, GYPA, HBGG, D7S8, GC), HLA_DQA1, and the blood groups ABO and Rh (CcDEe). Among the indigenous populations, the highest gene frequencies for O and D were 0.9703 and 1.000 for Zitlala (State of Guerrero) and 0.9955 and 0.9414 for Tzeltales (State of Chiapas), respectively. Maximum likelihood estimates of admixture components yield a trihybrid model with Amerindian (assuming that Nahua-Zitlala is the most representative indigenous population), Spanish, and African ancestry with the admixture proportions: 93.03, 6.03, and 0.94 for Tzeltales, and 28.99, 44.03, and 26.98 for Coyolillo. A contribution of the ancestral populations of Ixhuatlancillo, Actopan, Ixmiquilpan, Milpa-Alta, and Xochimilco were found with the following average of admixture proportions: 75.84, 22.50, and 1.66. The findings herein demonstrate that the genetic admixture of the Mexican indigenous populations who at present speak the same Amer-Indian language can be differentiated and that the majority of them have less ancestral indigenous contribution than those considered as Mestizo populations.

Impact of Typhoons on the Western Pacific Ocean (ITOP) DRI: Numerical Modeling of Ocean Mixed Layer Turbulence and Entrainment at High Winds

DTIC Science & Technology

2013-09-30

1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Impact of Typhoons on the Western Pacific Ocean (ITOP...The measurement and modeling activities include a focus on the impact of surface waves, air-sea fluxes and the temperature, salinity and velocity...SUBTITLE Impact of Typhoons on the Western Pacific Ocean (ITOP) DRI: Numerical Modeling of Ocean Mixed Layer Turbulence and Entrainment at High Winds

Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World

PubMed Central

2012-01-01

Background Populations of the Americas were founded by early migrants from Asia, and some have experienced recent genetic admixture. To better characterize the native and non-native ancestry components in populations from the Americas, we analyzed 815,377 autosomal SNPs, mitochondrial hypervariable segments I and II, and 36 Y-chromosome STRs from 24 Mesoamerican Totonacs and 23 South American Bolivians. Results and Conclusions We analyzed common genomic regions from native Bolivian and Totonac populations to identify 324 highly predictive Native American ancestry informative markers (AIMs). As few as 40–50 of these AIMs perform nearly as well as large panels of random genome-wide SNPs for predicting and estimating Native American ancestry and admixture levels. These AIMs have greater New World vs. Old World specificity than previous AIMs sets. We identify highly-divergent New World SNPs that coincide with high-frequency haplotypes found at similar frequencies in all populations examined, including the HGDP Pima, Maya, Colombian, Karitiana, and Surui American populations. Some of these regions are potential candidates for positive selection. European admixture in the Bolivian sample is approximately 12%, though individual estimates range from 0–48%. We estimate that the admixture occurred ~360–384 years ago. Little evidence of European or African admixture was found in Totonac individuals. Bolivians with pre-Columbian mtDNA and Y-chromosome haplogroups had 5–30% autosomal European ancestry, demonstrating the limitations of Y-chromosome and mtDNA haplogroups and the need for autosomal ancestry informative markers for assessing ancestry in admixed populations. PMID:22606979

Validating Variance Similarity Functions in the Entrainment Zone

NASA Astrophysics Data System (ADS)

Osman, M.; Turner, D. D.; Heus, T.; Newsom, R. K.

2017-12-01

In previous work, the water vapor variance in the entrainment zone was proposed to be proportional to the convective velocity scale, gradient water vapor mixing ratio and the Brunt-Vaisala frequency in the interfacial layer, while the variance of the vertical wind at in the entrainment zone was defined in terms of the convective velocity scale. The variances in the entrainment zone have been hypothesized to depend on two distinct functions, which also depend on the Richardson number. To the best of our knowledge, these hypotheses have never been tested observationally. Simultaneous measurements of the Eddy correlation surface flux, wind shear profiles from wind profilers, and variance profile measurements of vertical motions and water vapor by Doppler and Raman lidars, respectively, provide a unique opportunity to thoroughly examine the functions used in defining the variances and validate them. These observations were made over the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) site. We have identified about 30 cases from 2016 during which the convective boundary layer (CBL) is quasi-stationary and well mixed for at least 2 hours. The vertical profiles of turbulent fluctuations of the vertical wind and water vapor have been derived using an auto covariance technique to separate out the instrument random error to a set of 2-h period time series. The error analysis of the lidars observations demonstrates that the lidars are capable of resolving the vertical structure of turbulence around the entrainment zone. Therefore, utilizing this unique combination of observations, this study focuses on extensively testing the hypotheses that the second-order moments are indeed proportional to the functions which also depend on Richardson number. The coefficients that are used in defining the functions will also be determined observationally and compared against with the values suggested by Large eddy simulation (LES) studies.

Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation Channel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pearson, Walter H.; Kohn, Nancy P.; Skalski, J. R.

2006-09-30

Proposed dredging of the Columbia River has raised concerns about related impacts on Dungeness crab in the Columbia River Estuary (CRE). This study follows two major efforts, sponsored by the Portland District of the U. S. Army Corps of Engineers (USACE) to quantify the number of crabs entrained by a hopper dredge working in the CRE. From June 2002 through September 2002, Pacific Northwest National Laboratory (PNNL) conducted direct measurements of crab entrainment in the CRE from the mouth of the Columbia River (MCR, river mile -3 to +3) upriver as far as Miller Sands (river mile 21 to 24).more » These studies constituted a major step in quantifying crab entrainment in the CRE, and allowed statistically bounded projections of adult equivalent loss (AEL) for Dungeness crab populations under a range of future construction dredging and maintenance dredging scenarios (Pearson et al. 2002, 2003). In 2004, PNNL performed additional measurements to improve estimates of crab entrainment at Desdemona Shoals and at Flavel Bar, a reach near Astoria that had not been adequately sampled in 2002 (Figure 1). The 2004 data were used to update the crab loss projections for channel construction to 43 ft MLLW. In addition, a correlation between bottom salinity and adult (age 2+ and 3+, >100 mm carapace width) crab entrainment was developed using 2002 data, and elaborated upon with the 2004 data. This crab salinity model was applied to forecasting seasonal (monthly) entrainment rates and AEL using seasonal variations in salinity (Pearson et al. 2005). In the previous studies, entrainment rates in Desdemona Shoals were more variable than in any of the other reaches. Pearson et al. (2005) concluded that ?the dynamics behind the variable entrainment rates at Desdemona Shoals are not fully understood,? as well as finding that juvenile crab entrainment was not significantly correlated with salinity as it was for older crab. The present study was undertaken to address the question of

Method of making an air electrode material having controlled sinterability

DOEpatents

Vasilow, Theodore R.; Kuo, Lewis J. H.; Ruka, Roswell J.

1994-01-01

A tubular, porous ceramic electrode structure (3) is made from the sintered admixture of doped lanthanum manganite and an additive containing cerium where a solid electrolyte (4), substantially surrounds the air electrode, and a porous outer fuel electrode (7) substantially surrounds the electrolyte, to form a fuel cell (1).

A High-Density Admixture Map for Disease Gene Discovery in African Americans

PubMed Central

Smith, Michael W. ; Patterson, Nick ; Lautenberger, James A. ; Truelove, Ann L. ; McDonald, Gavin J. ; Waliszewska, Alicja ; Kessing, Bailey D. ; Malasky, Michael J. ; Scafe, Charles ; Le, Ernest ; De Jager, Philip L. ; Mignault, Andre A. ; Yi, Zeng ; de Thé, Guy ; Essex, Myron ; Sankalé, Jean-Louis ; Moore, Jason H. ; Poku, Kwabena ; Phair, John P. ; Goedert, James J. ; Vlahov, David ; Williams, Scott M. ; Tishkoff, Sarah A. ; Winkler, Cheryl A. ; De La Vega, Francisco M. ; Woodage, Trevor ; Sninsky, John J. ; Hafler, David A. ; Altshuler, David ; Gilbert, Dennis A. ; O’Brien, Stephen J. ; Reich, David 

2004-01-01

Admixture mapping (also known as “mapping by admixture linkage disequilibrium,” or MALD) provides a way of localizing genes that cause disease, in admixed ethnic groups such as African Americans, with ∼100 times fewer markers than are required for whole-genome haplotype scans. However, it has not been possible to perform powerful scans with admixture mapping because the method requires a dense map of validated markers known to have large frequency differences between Europeans and Africans. To create such a map, we screened through databases containing ∼450,000 single-nucleotide polymorphisms (SNPs) for which frequencies had been estimated in African and European population samples. We experimentally confirmed the frequencies of the most promising SNPs in a multiethnic panel of unrelated samples and identified 3,011 as a MALD map (1.2 cM average spacing). We estimate that this map is ∼70% informative in differentiating African versus European origins of chromosomal segments. This map provides a practical and powerful tool, which is freely available without restriction, for screening for disease genes in African American patient cohorts. The map is especially appropriate for those diseases that differ in incidence between the parental African and European populations. PMID:15088270

Exploring how musical rhythm entrains brain activity with electroencephalogram frequency-tagging.

PubMed

Nozaradan, Sylvie

2014-12-19

The ability to perceive a regular beat in music and synchronize to this beat is a widespread human skill. Fundamental to musical behaviour, beat and meter refer to the perception of periodicities while listening to musical rhythms and often involve spontaneous entrainment to move on these periodicities. Here, we present a novel experimental approach inspired by the frequency-tagging approach to understand the perception and production of rhythmic inputs. This approach is illustrated here by recording the human electroencephalogram responses at beat and meter frequencies elicited in various contexts: mental imagery of meter, spontaneous induction of a beat from rhythmic patterns, multisensory integration and sensorimotor synchronization. Collectively, our observations support the view that entrainment and resonance phenomena subtend the processing of musical rhythms in the human brain. More generally, they highlight the potential of this approach to help us understand the link between the phenomenology of musical beat and meter and the bias towards periodicities arising under certain circumstances in the nervous system. Entrainment to music provides a highly valuable framework to explore general entrainment mechanisms as embodied in the human brain. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Exploring how musical rhythm entrains brain activity with electroencephalogram frequency-tagging

PubMed Central

Nozaradan, Sylvie

2014-01-01

The ability to perceive a regular beat in music and synchronize to this beat is a widespread human skill. Fundamental to musical behaviour, beat and meter refer to the perception of periodicities while listening to musical rhythms and often involve spontaneous entrainment to move on these periodicities. Here, we present a novel experimental approach inspired by the frequency-tagging approach to understand the perception and production of rhythmic inputs. This approach is illustrated here by recording the human electroencephalogram responses at beat and meter frequencies elicited in various contexts: mental imagery of meter, spontaneous induction of a beat from rhythmic patterns, multisensory integration and sensorimotor synchronization. Collectively, our observations support the view that entrainment and resonance phenomena subtend the processing of musical rhythms in the human brain. More generally, they highlight the potential of this approach to help us understand the link between the phenomenology of musical beat and meter and the bias towards periodicities arising under certain circumstances in the nervous system. Entrainment to music provides a highly valuable framework to explore general entrainment mechanisms as embodied in the human brain. PMID:25385771

Entrainment range of nonidentical circadian oscillators by a light-dark cycle

NASA Astrophysics Data System (ADS)

Gu, Changgui; Xu, Jinshan; Liu, Zonghua; Rohling, Jos H. T.

2013-08-01

The suprachiasmatic nucleus (SCN) is a principal circadian clock in mammals, which controls physiological and behavioral daily rhythms. The SCN has two main features: Maintaining a rhythmic cycle of approximately 24 h in the absence of a light-dark cycle (free-running period) and the ability to entrain to external light-dark cycles. Both free-running period and range of entrainment vary from one species to another. To understand this phenomenon, we investigated the diversity of a free-running period by the distribution of coupling strengths in our previous work [Phys. Rev. EPLEEE81539-375510.1103/PhysRevE.80.030904 80, 030904(R) (2009)]. In this paper we numerically found that the dispersion of intrinsic periods among SCN neurons influence the entrainment range of the SCN, but has little influence on the free-running periods under constant darkness. This indicates that the dispersion of coupling strengths determines the diversity in free-running periods, while the dispersion of intrinsic periods determines the diversity in the entrainment range. A theoretical analysis based on two coupled neurons is presented to explain the results of numerical simulations.

HYDRODYNAMIC SIMULATIONS OF H ENTRAINMENT AT THE TOP OF He-SHELL FLASH CONVECTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Woodward, Paul R.; Lin, Pei-Hung; Herwig, Falk, E-mail: paul@lcse.umn.edu, E-mail: fherwig@uvic.ca

2015-01-01

We present the first three-dimensional, fully compressible gas-dynamics simulations in 4π geometry of He-shell flash convection with proton-rich fuel entrainment at the upper boundary. This work is motivated by the insufficiently understood observed consequences of the H-ingestion flash in post-asymptotic giant branch (post-AGB) stars (Sakurai's object) and metal-poor AGB stars. Our investigation is focused on the entrainment process at the top convection boundary and on the subsequent advection of H-rich material into deeper layers, and we therefore ignore the burning of the proton-rich fuel in this study. We find that for our deep convection zone, coherent convective motions of nearmore » global scale appear to dominate the flow. At the top boundary convective shear flows are stable against Kelvin-Helmholtz instabilities. However, such shear instabilities are induced by the boundary-layer separation in large-scale, opposing flows. This links the global nature of thick shell convection with the entrainment process. We establish the quantitative dependence of the entrainment rate on grid resolution. With our numerical technique, simulations with 1024{sup 3} cells or more are required to reach a numerical fidelity appropriate for this problem. However, only the result from the 1536{sup 3} simulation provides a clear indication that we approach convergence with regard to the entrainment rate. Our results demonstrate that our method, which is described in detail, can provide quantitative results related to entrainment and convective boundary mixing in deep stellar interior environments with very stiff convective boundaries. For the representative case we study in detail, we find an entrainment rate of 4.38 ± 1.48 × 10{sup –13} M {sub ☉} s{sup –1}.« less

Exploring Stratocumulus Cloud-Top Entrainment Processes and Parameterizations by Using Doppler Cloud Radar Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Albrecht, Bruce; Fang, Ming; Ghate, Virendra

2016-02-01

Observations from an upward-pointing Doppler cloud radar are used to examine cloud-top entrainment processes and parameterizations in a non-precipitating continental stratocumulus cloud deck maintained by time varying surface buoyancy fluxes and cloud-top radiative cooling. Radar and ancillary observations were made at the Atmospheric Radiation Measurement (ARM)’s Southern Great Plains (SGP) site located near Lamont, Oklahoma of unbroken, non-precipitating stratocumulus clouds observed for a 14-hour period starting 0900 Central Standard Time on 25 March 2005. The vertical velocity variance and energy dissipation rate (EDR) terms in a parameterized turbulence kinetic energy (TKE) budget of the entrainment zone are estimated using themore » radar vertical velocity and the radar spectrum width observations from the upward-pointing millimeter cloud radar (MMCR) operating at the SGP site. Hourly averages of the vertical velocity variance term in the TKE entrainment formulation correlates strongly (r=0.72) to the dissipation rate term in the entrainment zone. However, the ratio of the variance term to the dissipation decreases at night due to decoupling of the boundary layer. When the night -time decoupling is accounted for, the correlation between the variance and the EDR term increases (r=0.92). To obtain bulk coefficients for the entrainment parameterizations derived from the TKE budget, independent estimate of entrainment were obtained from an inversion height budget using ARM SGP observations of the local time derivative and the horizontal advection of the cloud-top height. The large-scale vertical velocity at the inversion needed for this budget from EMWF reanalysis. This budget gives a mean entrainment rate for the observing period of 0.76±0.15 cm/s. This mean value is applied to the TKE budget parameterizations to obtain the bulk coefficients needed in these parameterizations. These bulk coefficients are compared with those from previous and are used to in

Tracing the neural basis of auditory entrainment.

PubMed

Lehmann, Alexandre; Arias, Diana Jimena; Schönwiesner, Marc

2016-11-19

Neurons in the auditory cortex synchronize their responses to temporal regularities in sound input. This coupling or "entrainment" is thought to facilitate beat extraction and rhythm perception in temporally structured sounds, such as music. As a consequence of such entrainment, the auditory cortex responds to an omitted (silent) sound in a regular sequence. Although previous studies suggest that the auditory brainstem frequency-following response (FFR) exhibits some of the beat-related effects found in the cortex, it is unknown whether omissions of sounds evoke a brainstem response. We simultaneously recorded cortical and brainstem responses to isochronous and irregular sequences of consonant-vowel syllable /da/ that contained sporadic omissions. The auditory cortex responded strongly to omissions, but we found no evidence of evoked responses to omitted stimuli from the auditory brainstem. However, auditory brainstem responses in the isochronous sound sequence were more consistent across trials than in the irregular sequence. These results indicate that the auditory brainstem faithfully encodes short-term acoustic properties of a stimulus and is sensitive to sequence regularity, but does not entrain to isochronous sequences sufficiently to generate overt omission responses, even for sequences that evoke such responses in the cortex. These findings add to our understanding of the processing of sound regularities, which is an important aspect of human cognitive abilities like rhythm, music and speech perception. Copyright © 2016 IBRO. Published by Elsevier Ltd. All rights reserved.

Spanish genetic admixture is associated with larger V(O2) max decrement from sea level to 4338 m in Peruvian Quechua.

PubMed

Brutsaert, Tom D; Parra, Esteban J; Shriver, Mark D; Gamboa, Alfredo; Palacios, Jose-Antonio; Rivera, Maria; Rodriguez, Ivette; León-Velarde, Fabiola

2003-08-01

Quechua in the Andes may be genetically adapted to altitude and able to resist decrements in maximal O2 consumption in hypoxia (DeltaVo2 max). This hypothesis was tested via repeated measures of Vo2 max (sea level vs. 4338 m) in 30 men of mixed Spanish and Quechua origins. Individual genetic admixture level (%Spanish ancestry) was estimated by using ancestry-informative DNA markers. Genetic admixture explained a significant proportion of the variability in DeltaVo2 max after control for covariate effects, including sea level Vo2 max and the decrement in arterial O2 saturation measured at Vo2 max (DeltaSpO2 max) (R2 for admixture and covariate effects approximately 0.80). The genetic effect reflected a main effect of admixture on DeltaVo2 max (P = 0.041) and an interaction between admixture and DeltaSpO2 max (P = 0.018). Admixture predicted DeltaVo2 max only in subjects with a large DeltaSpO2 max (P = 0.031). In such subjects, DeltaVo2 max was 12-18% larger in a subgroup of subjects with high vs. low Spanish ancestry, with least squares mean values (+/-SE) of 739 +/- 71 vs. 606 +/- 68 ml/min, respectively. A trend for interaction (P = 0.095) was also noted between admixture and the decrease in ventilatory threshold at 4338 m. As previously, admixture predicted DeltaVo2 max only in subjects with a large decrease in ventilatory threshold. These findings suggest that the genetic effect on DeltaVo2 max depends on a subject's aerobic fitness. Genetic effects may be more important (or easier to detect) in athletic subjects who are more likely to show gas-exchange impairment during exercise. The results of this study are consistent with the evolutionary hypothesis and point to a better gas-exchange system in Quechua.

The magnitude and origin of European-American admixture in the Gila River Indian Community of Arizona: a union of genetics and demography.

PubMed Central

Williams, R C; Knowler, W C; Pettitt, D J; Long, J C; Rokala, D A; Polesky, H F; Hackenberg, R A; Steinberg, A G; Bennett, P H

1992-01-01

Complementary genetic and demographic analyses estimate the total proportion of European-American admixture in the Gila River Indian Community and trace its mode of entry. Among the 9,616 residents in the sample, 2,015 persons claim only partial Native American heritage. A procedure employing 23 alleles or haplotypes at eight loci was used to estimate the proportion of European-American admixture, m(a), for the entire sample and within six categories of Caucasian admixture calculated from demographic data, md. The genetic analysis gave an estimate of total European-American admixture in the community of 0.054 (95% confidence interval [CI] .044-.063), while an estimate from demographic records was similar, .059. Regression of m(a) on md yielded a fitted line m(a) = .922md, r = .959 (P = .0001). When total European-American admixture is partitioned between the contributing populations, Mexican-Americans have provided .671, European-Americans .305, and African-Americans .023. These results are discussed within the context of the ethnic composition of the Gila River Indian Community, the assumptions underlying the methods, and the potential that demographic data have for enriching genetic measurements of human admixture. It is concluded that, despite the severe assumptions of the mathematical methods, accurate, reliable estimates of genetic admixture are possible from allele and haplotype frequencies, even when there is little demographic information for the population. PMID:1609790

Intraspecific Genetic Admixture and the Morphological Diversification of an Estuarine Fish Population Complex

PubMed Central

Legault, Michel

2015-01-01

The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

Excess air during aquifer storage and recovery in an arid basin (Las Vegas Valley, USA)

NASA Astrophysics Data System (ADS)

Solomon, D. Kip; Cole, Erin; Leising, Joseph F.

2011-02-01

The Las Vegas Valley Water District in Nevada, USA, has operated an artificial recharge (AR) program since 1989. In summer 2001, observations of gas exsolving from tap water prompted a study that revealed total dissolved gas (TDG) pressures approaching 2 atm with a gas composition that it is predominantly air. Measurements of TDG pressure at well heads and in the distribution system indicated two potential mechanisms for elevated TDG pressures: (1) air entrainment during AR operations, and (2) temperature changes between the winter recharge season and the summer withdrawal season. Air entrainment during pumping was investigated by intentionally allowing the forebay (upstream reservoir) of a large pumping station to drawdown to the point of vortex formation. This resulted in up to a 0.7 atm increase in TDG pressure. In general, the solubility of gases in water decreases as the temperature increases. In the Las Vegas Valley, water that acquired a modest amount of dissolved gas during winter artificial recharge operations experienced an increase in dissolved gas pressure (0.04 atm/°C) as the water warmed in the subsurface. A combination of air entrainment during AR operations and its amplification by temperature increase after recharge can account for most of the observed amounts of excess gas at this site.

Aging affects the balance of neural entrainment and top-down neural modulation in the listening brain

PubMed Central

Henry, Molly J.; Herrmann, Björn; Kunke, Dunja; Obleser, Jonas

2017-01-01

Healthy aging is accompanied by listening difficulties, including decreased speech comprehension, that stem from an ill-understood combination of sensory and cognitive changes. Here, we use electroencephalography to demonstrate that auditory neural oscillations of older adults entrain less firmly and less flexibly to speech-paced (∼3 Hz) rhythms than younger adults’ during attentive listening. These neural entrainment effects are distinct in magnitude and origin from the neural response to sound per se. Non-entrained parieto-occipital alpha (8–12 Hz) oscillations are enhanced in young adults, but suppressed in older participants, during attentive listening. Entrained neural phase and task-induced alpha amplitude exert opposite, complementary effects on listening performance: higher alpha amplitude is associated with reduced entrainment-driven behavioural performance modulation. Thus, alpha amplitude as a task-driven, neuro-modulatory signal can counteract the behavioural corollaries of neural entrainment. Balancing these two neural strategies may present new paths for intervention in age-related listening difficulties. PMID:28654081

The effect of air entrapment on the performance of squeeze film dampers: Experiments and analysis

NASA Astrophysics Data System (ADS)

Diaz Briceno, Sergio Enrique

Squeeze film dampers (SFDs) are an effective means to introduce the required damping in rotor-bearing systems. They are a standard application in jet engines and are commonly used in industrial compressors. Yet, lack of understanding of their operation has confined the design of SFDs to a costly trial and error process based on prior experience. The main factor deterring the success of analytical models for the prediction of SFDs' performance lays on the modeling of the dynamic film rupture. Usually, the cavitation models developed for journal bearings are applied to SFDs. Yet, the characteristic motion of the SFD results in the entrapment of air into the oil film, thus producing a bubbly mixture that can not be represented by these models. In this work, an extensive experimental study establishes qualitatively and---for the first time---quantitatively the differences between operation with vapor cavitation and with air entrainment. The experiments show that most operating conditions lead to air entrainment and demonstrate the paramount effect it has on the performance of SFDs, evidencing the limitation of currently available models. Further experiments address the operation of SFDs with controlled bubbly mixtures. These experiments bolster the possibility of modeling air entrapment by representing the lubricant as a homogeneous mixture of air and oil and provide a reliable data base for benchmarking such a model. An analytical model is developed based on a homogeneous mixture assumption and where the bubbles are described by the Rayleigh-Plesset equation. Good agreement is obtained between this model and the measurements performed in the SFD operating with controlled mixtures. A complementary analytical model is devised to estimate the amount of air entrained from the balance of axial flows in the film. A combination of the analytical models for prediction of the air volume fraction and of the hydrodynamic pressures renders promising results for prediction of the

Combined air and water pollution control system

NASA Technical Reports Server (NTRS)

Wolverton, Billy C. (Inventor); Jarrell, Lamont (Inventor)

1990-01-01

A bioaquatic air pollution control system for controlling both water and atmospheric pollution is disclosed. The pollution control system includes an exhaust for directing polluted gases out of a furnace and a fluid circulating system which circulates fluid, such as waste water, from a source, past the furnace where the fluid flow entrains the pollutants from the furnace. The combined fluid and pollutants are then directed through a rock/plant/microbial filtering system. A suction pump pumps the treated waste water from the filter system past the exhaust to again entrain more pollutants from the furnace where they are combined with the fluid (waste water) and directed to the filter system.

Presence of strong harmonics during visual entrainment: a magnetoencephalography study.

PubMed

Heinrichs-Graham, Elizabeth; Wilson, Tony W

2012-09-01

Visual neurons are known to synchronize their firing with stimuli that flicker at a constant rate (e.g. 12Hz). These so-called visual steady-state responses (VSSR) are a well-studied phenomenon, yet the underlying mechanisms are widely disagreed upon. Furthermore, there is limited evidence that visual neurons may simultaneously synchronize at harmonics of the stimulation frequency. We utilized magnetoencephalography (MEG) to examine synchronization at harmonics of the visual stimulation frequency (18Hz). MEG data were analyzed for event-related-synchronization (ERS) at the fundamental frequency, 36, 54, and 72Hz. We found strong ERS in all bands. Only 31% of participants showed maximum entrainment at the fundamental; others showed stronger entrainment at either 36 or 54Hz. The cortical foci of these responses indicated that the harmonics involved cortices that were partially distinct from the fundamental. These findings suggest that spatially-overlapping subpopulations of neurons are simultaneously entrained at different harmonics of the stimulus frequency. Copyright © 2012 Elsevier B.V. All rights reserved.

Numerical Modeling of Deep Mantle Flow: Thermochemical Convection and Entrainment

NASA Astrophysics Data System (ADS)

Mulyukova, Elvira; Steinberger, Bernhard; Dabrowski, Marcin; Sobolev, Stephan

2013-04-01

One of the most robust results from tomographic studies is the existence of two antipodally located Large Low Shear Velocity Provinces (LLSVPs) at the base of the mantle, which appear to be chemically denser than the ambient mantle. Results from reconstruction studies (Torsvik et al., 2006) infer that the LLSVPs are stable, long-lived, and are sampled by deep mantle plumes that rise predominantly from their margins. The origin of the dense material is debated, but generally falls within three categories: (i) a primitive layer that formed during magma ocean crystallization, (ii) accumulation of a dense eclogitic component from the recycled oceanic crust, and (iii) outer core material leaking into the lower mantle. A dense layer underlying a less dense ambient mantle is gravitationally stable. However, the flow due to thermal density variations, i.e. hot rising plumes and cold downwelling slabs, may deform the layer into piles with higher topography. Further deformation may lead to entrainment of the dense layer, its mixing with the ambient material, and even complete homogenisation with the rest of the mantle. The amount of the anomalous LLSVP-material that gets entrained into the rising plumes poses a constraint on the survival time of the LLSVPs, as well as on the plume buoyancy, on the lithospheric uplift associated with plume interaction and geochemical signature of the erupted lavas observed at the Earth's surface. Recent estimates for the plume responsible for the formation of the Siberian Flood Basalts give about 15% of entrained dense recycled oceanic crust, which made the hot mantle plume almost neutrally buoyant (Sobolev et al., 2011). In this numerical study we investigate the mechanics of entrainment of a dense basal layer by convective mantle flow. We observe that the types of flow that promote entrainment of the dense layer are (i) upwelling of the dense layer when it gets heated enough to overcome its stabilizing chemical density anomaly, (ii

What Causes Birth Order-Intelligence Patterns? The Admixture Hypothesis, Revived.

ERIC Educational Resources Information Center

Rodgers, Joseph Lee

2001-01-01

Describes why birth order interests both parents and researchers, discussing what really causes apparent birth order effects on intelligence, examining problems with using cross-sectional intelligence data, and noting how to move beyond cross-sectional inferences. Explains the admixture hypothesis, which finds that family size is much more…

First UAV Measurements of Entrainment Layer Fluxes with Coupled Cloud Property Measurements

NASA Astrophysics Data System (ADS)

Thomas, R. M.; Praveen, P. S.; Wilcox, E. M.; Pistone, K.; Bender, F.; Ramanathan, V.

2012-12-01

This study details entrainment flux measurements made from a lightweight unmanned aerial vehicle (UAV) containing turbulent water vapor flux instrumentation (Thomas et al., 2012). The system was flown for 26 flights during the Cloud, Aerosol, Radiative forcing, Dynamics EXperiment (CARDEX) in the Maldives in March 2012 to study interrelationships between entrainment, aerosols, water budget, cloud microphysics and radiative fluxes in a trade wind cumulus cloud regime. A major advantage of using this lightweight, precision autopiloted UAV system with scientific telemetry is the ability to target small-scale features in the boundary layer, such as an entrainment layer, with minimal aircraft induced disruption. Results are presented from two UAVs flown in stacked formation: one UAV situated in-cloud measuring cloud-droplet size distribution spectra and liquid water content, and another co-located 100m above measuring turbulent properties and entrainment latent heat flux (λEE). We also show latent heat flux and turbulence measurements routinely made at the entrainment layer base and altitudes from the surface up to 4kft. Ratios of λEE to corresponding surface tower values (λES) display a bimodal frequency distribution with ranges 0.22-0.53 and 0.79-1.5, with occasional events >7. Reasons for this distribution are discussed drawing upon boundary layer and free tropospheric dynamics and meteorology, turbulence length scales, surface conditions, and cloud interactions. Latent heat flux profiles are combined with in-cloud UAV Liquid Water Content (LWC) data and surface based Liquid Water Path (LWP) and Precipitable Water Vapor (PWV) measurements to produce observationally constrained vertical water budgets, providing insights into diurnal coupling of λEE and λES. Observed λEE, λES, water budgets, and cloud microphysical responses to entrainment are then contextualized with respect to measured aerosol loading profiles and airmass history.

Individual Differences in Rhythmic Cortical Entrainment Correlate with Predictive Behavior in Sensorimotor Synchronization

PubMed Central

Nozaradan, Sylvie; Peretz, Isabelle; Keller, Peter E.

2016-01-01

The current study aims at characterizing the mechanisms that allow humans to entrain the mind and body to incoming rhythmic sensory inputs in real time. We addressed this unresolved issue by examining the relationship between covert neural processes and overt behavior in the context of musical rhythm. We measured temporal prediction abilities, sensorimotor synchronization accuracy and neural entrainment to auditory rhythms as captured using an EEG frequency-tagging approach. Importantly, movement synchronization accuracy with a rhythmic beat could be explained by the amplitude of neural activity selectively locked with the beat period when listening to the rhythmic inputs. Furthermore, stronger endogenous neural entrainment at the beat frequency was associated with superior temporal prediction abilities. Together, these results reveal a direct link between cortical and behavioral measures of rhythmic entrainment, thus providing evidence that frequency-tagged brain activity has functional relevance for beat perception and synchronization. PMID:26847160

Individual Differences in Rhythmic Cortical Entrainment Correlate with Predictive Behavior in Sensorimotor Synchronization.

PubMed

Nozaradan, Sylvie; Peretz, Isabelle; Keller, Peter E

2016-02-05

The current study aims at characterizing the mechanisms that allow humans to entrain the mind and body to incoming rhythmic sensory inputs in real time. We addressed this unresolved issue by examining the relationship between covert neural processes and overt behavior in the context of musical rhythm. We measured temporal prediction abilities, sensorimotor synchronization accuracy and neural entrainment to auditory rhythms as captured using an EEG frequency-tagging approach. Importantly, movement synchronization accuracy with a rhythmic beat could be explained by the amplitude of neural activity selectively locked with the beat period when listening to the rhythmic inputs. Furthermore, stronger endogenous neural entrainment at the beat frequency was associated with superior temporal prediction abilities. Together, these results reveal a direct link between cortical and behavioral measures of rhythmic entrainment, thus providing evidence that frequency-tagged brain activity has functional relevance for beat perception and synchronization.

Laboratory experiments on stability and entrainment of oceanic stratocumulus. Part 1: Instability experiment

NASA Technical Reports Server (NTRS)

Shy, Shenqyang S.

1990-01-01

The existence and persistence of marine stratocumulus play a significant role in the overall energy budget of the earth. Their stability and entrainment process are important in global climate studies, as well as for local weather forecasting. The purposes of the experimental simulations are to study this process and to address this paradox. The effects of buoyancy reversal is investigated, followed by two types of experiments. An instability experiment involves the behavior of a fully turbulent wake near the inversion generated by a sliding plate. Due to buoyancy reversal, the heavy, mixed fluid starts to sink, turning the potential energy created by the mixing process into kinetic energy, thereby increasing the entrainment rate. An entrainment experiment, using a vertically oscillating grid driven by a controllable speed motor, produces many eddy-induced entrainments at a surface region on scales much less than the depth of the layer.

The CRTC1-SIK1 Pathway Regulates Entrainment of the Circadian Clock

PubMed Central

Jagannath, Aarti; Butler, Rachel; Godinho, Sofia I.H.; Couch, Yvonne; Brown, Laurence A.; Vasudevan, Sridhar R.; Flanagan, Kevin C.; Anthony, Daniel; Churchill, Grant C.; Wood, Matthew J.A.; Steiner, Guido; Ebeling, Martin; Hossbach, Markus; Wettstein, Joseph G.; Duffield, Giles E.; Gatti, Silvia; Hankins, Mark W.; Foster, Russell G.; Peirson, Stuart N.

2013-01-01

Summary Retinal photoreceptors entrain the circadian system to the solar day. This photic resetting involves cAMP response element binding protein (CREB)-mediated upregulation of Per genes within individual cells of the suprachiasmatic nuclei (SCN). Our detailed understanding of this pathway is poor, and it remains unclear why entrainment to a new time zone takes several days. By analyzing the light-regulated transcriptome of the SCN, we have identified a key role for salt inducible kinase 1 (SIK1) and CREB-regulated transcription coactivator 1 (CRTC1) in clock re-setting. An entrainment stimulus causes CRTC1 to coactivate CREB, inducing the expression of Per1 and Sik1. SIK1 then inhibits further shifts of the clock by phosphorylation and deactivation of CRTC1. Knockdown of Sik1 within the SCN results in increased behavioral phase shifts and rapid re-entrainment following experimental jet lag. Thus SIK1 provides negative feedback, acting to suppress the effects of light on the clock. This pathway provides a potential target for the regulation of circadian rhythms. PMID:23993098

Stochastic entrainment of a stochastic oscillator.

PubMed

Wang, Guanyu; Peskin, Charles S

2015-01-01

In this work, we consider a stochastic oscillator described by a discrete-state continuous-time Markov chain, in which the states are arranged in a circle, and there is a constant probability per unit time of jumping from one state to the next in a specified direction around the circle. At each of a sequence of equally spaced times, the oscillator has a specified probability of being reset to a particular state. The focus of this work is the entrainment of the oscillator by this periodic but stochastic stimulus. We consider a distinguished limit, in which (i) the number of states of the oscillator approaches infinity, as does the probability per unit time of jumping from one state to the next, so that the natural mean period of the oscillator remains constant, (ii) the resetting probability approaches zero, and (iii) the period of the resetting signal approaches a multiple, by a ratio of small integers, of the natural mean period of the oscillator. In this distinguished limit, we use analytic and numerical methods to study the extent to which entrainment occurs.

Synchrony and entrainment properties of robust circadian oscillators

PubMed Central

Bagheri, Neda; Taylor, Stephanie R.; Meeker, Kirsten; Petzold, Linda R.; Doyle, Francis J.

2008-01-01

Systems theoretic tools (i.e. mathematical modelling, control, and feedback design) advance the understanding of robust performance in complex biological networks. We highlight phase entrainment as a key performance measure used to investigate dynamics of a single deterministic circadian oscillator for the purpose of generating insight into the behaviour of a population of (synchronized) oscillators. More specifically, the analysis of phase characteristics may facilitate the identification of appropriate coupling mechanisms for the ensemble of noisy (stochastic) circadian clocks. Phase also serves as a critical control objective to correct mismatch between the biological clock and its environment. Thus, we introduce methods of investigating synchrony and entrainment in both stochastic and deterministic frameworks, and as a property of a single oscillator or population of coupled oscillators. PMID:18426774

Ancestry, admixture and fitness in Colombian genomes

PubMed Central

Rishishwar, Lavanya; Conley, Andrew B.; Wigington, Charles H.; Wang, Lu; Valderrama-Aguirre, Augusto; King Jordan, I.

2015-01-01

The human dimension of the Columbian Exchange entailed substantial genetic admixture between ancestral source populations from Africa, the Americas and Europe, which had evolved separately for many thousands of years. We sought to address the implications of the creation of admixed American genomes, containing novel allelic combinations, for human health and fitness via analysis of an admixed Colombian population from Medellin. Colombian genomes from Medellin show a wide range of three-way admixture contributions from ancestral source populations. The primary ancestry component for the population is European (average = 74.6%, range = 45.0%–96.7%), followed by Native American (average = 18.1%, range = 2.1%–33.3%) and African (average = 7.3%, range = 0.2%–38.6%). Locus-specific patterns of ancestry were evaluated to search for genomic regions that are enriched across the population for particular ancestry contributions. Adaptive and innate immune system related genes and pathways are particularly over-represented among ancestry-enriched segments, including genes (HLA-B and MAPK10) that are involved in defense against endemic pathogens such as malaria. Genes that encode functions related to skin pigmentation (SCL4A5) and cutaneous glands (EDAR) are also found in regions with anomalous ancestry patterns. These results suggest the possibility that ancestry-specific loci were differentially retained in the modern admixed Colombian population based on their utility in the New World environment. PMID:26197429

Comparison of spacing factors as measured by the air-void analyzer and ASTM C457.

DOT National Transportation Integrated Search

2015-12-01

Freezing and thawing cycles will result in damage to concrete that is saturated : unless the concrete is properly entrained with small and well-dispersed air : voids. Durable concrete subject to cycles of freezing and thawing must : have an air-void ...

Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence.

PubMed

Molofsky, Jane; Keller, Stephen R; Lavergne, Sébastien; Kaproth, Matthew A; Eppinga, Maarten B

2014-04-01

Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological organization such as communities and ecosystems. Because biological invasions frequently involve the admixture of previously isolated lineages as a result of human-aided dispersal, studies of invasive populations can reveal how admixture results in novel genotypes and shifts in functional trait variation within populations. Further, because invasive species can be ecosystem engineers within invaded ecosystems, admixture-induced shifts in the functional traits of invaders can affect the composition of native biodiversity and alter the flow of resources through the system. Thus, invasions represent promising yet under-investigated examples of how the effects of short-term evolutionary changes can cascade across biological scales of diversity. Here, we propose a conceptual framework that admixture between divergent source populations during biological invasions can reorganize the genetic variation underlying key functional traits, leading to shifts in the mean and variance of functional traits within invasive populations. Changes in the mean or variance of key traits can initiate new ecological feedback mechanisms that result in a critical transition from a native ecosystem to a novel invasive ecosystem. We illustrate the application of this framework with reference to a well-studied plant model system in invasion biology and show how a combination of quantitative genetic experiments, functional trait studies, whole ecosystem field studies and modeling can be used to explore the dynamics predicted to trigger these critical transitions.

Interpretations of Frequency Domain Analyses of Neural Entrainment: Periodicity, Fundamental Frequency, and Harmonics.

PubMed

Zhou, Hong; Melloni, Lucia; Poeppel, David; Ding, Nai

2016-01-01

Brain activity can follow the rhythms of dynamic sensory stimuli, such as speech and music, a phenomenon called neural entrainment. It has been hypothesized that low-frequency neural entrainment in the neural delta and theta bands provides a potential mechanism to represent and integrate temporal information. Low-frequency neural entrainment is often studied using periodically changing stimuli and is analyzed in the frequency domain using the Fourier analysis. The Fourier analysis decomposes a periodic signal into harmonically related sinusoids. However, it is not intuitive how these harmonically related components are related to the response waveform. Here, we explain the interpretation of response harmonics, with a special focus on very low-frequency neural entrainment near 1 Hz. It is illustrated why neural responses repeating at f Hz do not necessarily generate any neural response at f Hz in the Fourier spectrum. A strong neural response at f Hz indicates that the time scales of the neural response waveform within each cycle match the time scales of the stimulus rhythm. Therefore, neural entrainment at very low frequency implies not only that the neural response repeats at f Hz but also that each period of the neural response is a slow wave matching the time scale of a f Hz sinusoid.

Emissions from vehicles, tailpipe and vehicle re-entrained road dust

NASA Astrophysics Data System (ADS)

Zhu, Dongzi

Emissions from transportation are some of the largest sources of urban air pollution. Transportation emissions originate from both the engine-through combustion processes and non-tailpipe re-suspended road dust emissions induced by vehicle travel on unpaved and paved roads. Gaseous and particulate emissions from transportation sources have negative impacts on human health, visibility and may influence the global radiation balance. Fugitive dust emissions originating from vehicle travel on paved and unpaved roads constitute a significant fraction of the PM10 in many areas of the western US impacting their attainment status of National Ambient Air Quality Standards. The research used three novel instrument platforms developed at the Desert Research Institute. The In-Plume Emissions Test Stand (IPETS) was designed to provide characterization of exhaust emissions from in-use individual vehicles or engines by analyzing air as close as 1 m from the exhaust port. Real-world emission factors can be quantified by in-plume measurements and provide more realistic measures for emission inventories, source modeling, and receptor modeling than certification measurements. The Testing Re-entrained Aerosol Kinetic Emissions from Roads (TRAKER) provides an effective alternate approach to the EPA AP-42 road dust emissions estimation techniques by sampling 1000s of km of roads versus isolated 3 m sections. The Portable Deposition Monitoring Platform (PDMP incorporates PM and meteorological instruments to characterize the downwind change in particle concentrations to define depositional losses in different environments. The research outcome provides important knowledge for understanding diesel engine emissions, road dust emissions and aerosol deposition process near road sources.

Entrainment of coarse grains using a discrete particle model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valyrakis, Manousos, E-mail: Manousos.Valyrakis@glasgow.ac.uk; Arnold, Roger B. Jr.

2014-10-06

Conventional bedload transport models and incipient motion theories relying on a time-averaged boundary shear stress are incapable of accounting for the effects of fluctuating near-bed velocity in turbulent flow and are therefore prone to significant errors. Impulse, the product of an instantaneous force magnitude and its duration, has been recently proposed as an appropriate criterion for quantifying the effects of flow turbulence in removing coarse grains from the bed surface. Here, a discrete particle model (DPM) is used to examine the effects of impulse, representing a single idealized turbulent event, on particle entrainment. The results are classified according to themore » degree of grain movement into the following categories: motion prior to entrainment, initial dislodgement, and energetic displacement. The results indicate that in all three cases the degree of particle motion depends on both the force magnitude and the duration of its application and suggest that the effects of turbulence must be adequately accounted for in order to develop a more accurate method of determining incipient motion. DPM is capable of simulating the dynamics of grain entrainment and is an appropriate tool for further study of the fundamental mechanisms of sediment transport.« less

Entrainment of oviposition in the fowl using bright and dim light cycles.

PubMed

Morris, T R; Bhatti, B M

1978-05-01

1. Nine short trial, involving 96 different treatments, were used to investigate the critical intensities and duration of bright and dim periods of lighting needed to entrain oviposition in cycles ranging from 21 to 30 h. 2. Entrainment was shown to depend upon the contrast between bright and dim lighting, and to be independent of the absolute light intensity. 3. A bright: dim ratio of 13:1 fully entrained oviposition in cycles of 25 h and 27 h. For 23-h and 28-h cycles a 30:1 ratio was required. Twenty-one-hour cycles required a ratio of 300:1 and with 30-h cycles a ratio of 1000:1 was needed to achieve full entrainment of oviposition. 4. In 24-h cycles, 1 h of bright lighting at 02.00 h was sufficient to override other environmental signals and cause eggs to be laid in the late evening, but a minimum bright period of 6 h was needed to cause full phase setting with 21-h cycles. 5. Circadian periodicity can easily be imposed on hens by providing a short exposure to bright light with a background of continuous dim light; but the signal must be increased (by providing a greater contrast between bright and dim lights and/or a longer period of bright lighting) to entrain oviposition when the cycle deviates markedly from the natural period of 24 h.

Experimental Study of Load Carrying Capacity of Point Contacts at Zero Entrainment Velocity

NASA Technical Reports Server (NTRS)

Shogin, B. A.; Jones, W. R., Jr.; Kingsbury, E. P.; Jansen, M. J.; Prahl, J. M.

1998-01-01

A capacitance technique was used to monitor the film thickness separating two steel balls while subjecting the ball-ball contact to highly stressed, zero entrainment velocity conditions. Tests were performed in a nitrogen atmosphere and utilized 52100 steel balls and a polyalphaolefin lubricant. Capacitance to film thickness accuracy was verified under pure rolling conditions using established EHL theory. Zero entrainment velocity tests were performed at sliding speeds from 6.0 to 10.0 m/s and for sustained amounts of time to 28.8 min. The protective lubricant film separating the specimens at zero entrainment velocity had a film thickness between 0.10 to 0.14 microns (4 to 6 micro in.), which corresponded to a k value of 4. The formation of an immobile surface film formed by lubricant entrapment is discussed as an explanation of the load carrying capacity at zero entrainment velocity conditions, relevant to the ball-ball contacts occurring in retainerless ball bearings.

Forced rather than voluntary exercise entrains peripheral clocks via a corticosterone/noradrenaline increase in PER2::LUC mice

PubMed Central

Sasaki, Hiroyuki; Hattori, Yuta; Ikeda, Yuko; Kamagata, Mayo; Iwami, Shiho; Yasuda, Shinnosuke; Tahara, Yu; Shibata, Shigenobu

2016-01-01

Exercise during the inactive period can entrain locomotor activity and peripheral circadian clock rhythm in mice; however, mechanisms underlying this entrainment are yet to be elucidated. Here, we showed that the bioluminescence rhythm of peripheral clocks in PER2::LUC mice was strongly entrained by forced treadmill and forced wheel-running exercise rather than by voluntary wheel-running exercise at middle time during the inactivity period. Exercise-induced entrainment was accompanied by increased levels of serum corticosterone and norepinephrine in peripheral tissues, similar to the physical stress-induced response. Adrenalectomy with norepinephrine receptor blockers completely blocked the treadmill exercise-induced entrainment. The entrainment of the peripheral clock by exercise is independent of the suprachiasmatic nucleus clock, the main oscillator in mammals. The present results suggest that the response of forced exercise, but not voluntary exercise, may be similar to that of stress, and possesses the entrainment ability of peripheral clocks through the activation of the adrenal gland and the sympathetic nervous system. PMID:27271267

Are non-human primates capable of rhythmic entrainment? Evidence for the gradual audiomotor evolution hypothesis.

PubMed

Merchant, Hugo; Honing, Henkjan

2013-01-01

We propose a decomposition of the neurocognitive mechanisms that might underlie interval-based timing and rhythmic entrainment. Next to reviewing the concepts central to the definition of rhythmic entrainment, we discuss recent studies that suggest rhythmic entrainment to be specific to humans and a selected group of bird species, but, surprisingly, is not obvious in non-human primates. On the basis of these studies we propose the gradual audiomotor evolution hypothesis that suggests that humans fully share interval-based timing with other primates, but only partially share the ability of rhythmic entrainment (or beat-based timing). This hypothesis accommodates the fact that non-human primates (i.e., macaques) performance is comparable to humans in single interval tasks (such as interval reproduction, categorization, and interception), but show differences in multiple interval tasks (such as rhythmic entrainment, synchronization, and continuation). Furthermore, it is in line with the observation that macaques can, apparently, synchronize in the visual domain, but show less sensitivity in the auditory domain. And finally, while macaques are sensitive to interval-based timing and rhythmic grouping, the absence of a strong coupling between the auditory and motor system of non-human primates might be the reason why macaques cannot rhythmically entrain in the way humans do.

Light-driven changes in energy metabolism directly entrain the cyanobacterial circadian oscillator

PubMed Central

Rust, Michael J.; Golden, Susan S.; O'Shea, Erin K.

2012-01-01

Circadian clocks are self-sustained biological oscillators that can be entrained by environmental cues. Though this phenomenon has been studied in many organisms, the molecular mechanisms of entrainment remain unclear. Three cyanobacterial proteins and ATP are sufficient to generate oscillations in phosphorylation in vitro. We show that changes in illumination that induce a phase shift in cultured cyanobacteria also cause changes in the ATP/ADP ratio. When these nucleotide changes are simulated in the in vitro oscillator, they cause phase shifts similar to those observed in vivo. Physiological concentrations of ADP inhibit kinase activity in the oscillator and a mathematical model constrained by data shows that this effect is sufficient to quantitatively explain entrainment of the cyanobacterial circadian clock. PMID:21233390

Historical introgression drives pervasive mitochondrial admixture between two species of pelagic sharks.

PubMed

Corrigan, Shannon; Maisano Delser, Pierpaolo; Eddy, Corey; Duffy, Clinton; Yang, Lei; Li, Chenhong; Bazinet, Adam L; Mona, Stefano; Naylor, Gavin J P

2017-05-01

We use a genomic sampling of both nuclear and mitochondrial DNA markers to examine a pattern of genetic admixture between Carcharhinus galapagensis (Galapagos sharks) and Carcharhinus obscurus (dusky sharks), two well-known and closely related sharks that have been recognized as valid species for more than 100years. We describe widespread mitochondrial-nuclear discordance in which these species are readily distinguishable based on 2152 nuclear single nucleotide polymorphisms from 910 independent autosomal regions, but show pervasive mitochondrial admixture. The species are superficially morphologically cryptic as adults but show marked differences in internal anatomy, as well as niche separation. There was no indication of ongoing hybridization between the species. We conclude that the observed mitochondrial-nuclear discordance is likely due to historical mitochondrial introgression following a range expansion. Copyright © 2017 Elsevier Inc. All rights reserved.

Investigation of Proprietary Admixtures. Report 2. 1977-1978 Tests.

DTIC Science & Technology

1980-01-01

Laboratory CWR Work Unit 31138 P. 0. Box 631, Vicksburg, Miss. 39180 1,. CONTROLLING OFFICE NAME AND ADDRESS T Office, Chief of Engineers, U. S. Army Jam n...Tests of Proprietary Admixtures (CWR Work Unit 31138 ). The Technical Monitor for this investigation was Mr. J. A. Rhodes, DAEN-CWE-C. The...4 Scope ............. ........................... 4 Revisions and Corrections to Report I ..... ........... 5 PART II: MATERIALS, MIXTURES

Comparison of entrainment in constant volume and constant flux dense currents over sloping bottoms

NASA Astrophysics Data System (ADS)

Bhaganagar, K.; Nayamatullah, M.; Cenedese, C.

2014-12-01

Three dimensional high resolution large eddy simulations (LES) are employed to simulate lock-exchange and constant flux dense flows over inclined surface with the aim of investigating, visualizing and describing the turbulent structure and the evolution of bottom-propagating compositional density current at the channel bottom. The understanding of dynamics of density current is largely determined by the amount of interfacial mixing or entrainment between the ambient and dense fluids. No previous experimental or numerical studies have been done to estimate entrainment in classical lock-exchange system. The differences in entrainment between the lock-exchange and constant flux are explored. Comparing the results of flat bed with inclined surface results, flow exhibits significant differences near the leading edge or nose of the front of the density currents due to inclination of surface. Further, the instabilities are remarkably enhanced resulting Kelvin-Helmholtz and lobe-cleft type of instabilities arises much earlier in time. In this study, a brief analysis of entrainment on lock-exchange density current is presented using different bed slopes and a set of reduced gravity values (g'). We relate the entrainment value with different flow parameters such as Froude number (Fr) and Reynolds number (Re).

Conditions for super-adiabatic droplet growth after entrainment mixing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Fan; Shaw, Raymond; Xue, Huiwen

Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixedmore » parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the “super-adiabatic” growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. Lastly, these findings have implications for the origin of large cloud droplets that may contribute to onset of collision–coalescence in warm clouds.« less

Conditions for super-adiabatic droplet growth after entrainment mixing

DOE PAGES

Yang, Fan; Shaw, Raymond; Xue, Huiwen

2016-07-29

Cloud droplet response to entrainment and mixing between a cloud and its environment is considered, accounting for subsequent droplet growth during adiabatic ascent following a mixing event. The vertical profile for liquid water mixing ratio after a mixing event is derived analytically, allowing the reduction to be predicted from the mixing fraction and from the temperature and humidity for both the cloud and environment. It is derived for the limit of homogeneous mixing. The expression leads to a critical height above the mixing level: at the critical height the cloud droplet radius is the same for both mixed and unmixedmore » parcels, and the critical height is independent of the updraft velocity and mixing fraction. Cloud droplets in a mixed parcel are larger than in an unmixed parcel above the critical height, which we refer to as the “super-adiabatic” growth region. Analytical results are confirmed with a bin microphysics cloud model. Using the model, we explore the effects of updraft velocity, aerosol source in the environmental air, and polydisperse cloud droplets. Results show that the mixed parcel is more likely to reach the super-adiabatic growth region when the environmental air is humid and clean. It is also confirmed that the analytical predictions are matched by the volume-mean cloud droplet radius for polydisperse size distributions. Lastly, these findings have implications for the origin of large cloud droplets that may contribute to onset of collision–coalescence in warm clouds.« less

Cortical oscillations and entrainment in speech processing during working memory load.

PubMed

Hjortkjaer, Jens; Märcher-Rørsted, Jonatan; Fuglsang, Søren A; Dau, Torsten

2018-02-02

Neuronal oscillations are thought to play an important role in working memory (WM) and speech processing. Listening to speech in real-life situations is often cognitively demanding but it is unknown whether WM load influences how auditory cortical activity synchronizes to speech features. Here, we developed an auditory n-back paradigm to investigate cortical entrainment to speech envelope fluctuations under different degrees of WM load. We measured the electroencephalogram, pupil dilations and behavioural performance from 22 subjects listening to continuous speech with an embedded n-back task. The speech stimuli consisted of long spoken number sequences created to match natural speech in terms of sentence intonation, syllabic rate and phonetic content. To burden different WM functions during speech processing, listeners performed an n-back task on the speech sequences in different levels of background noise. Increasing WM load at higher n-back levels was associated with a decrease in posterior alpha power as well as increased pupil dilations. Frontal theta power increased at the start of the trial and increased additionally with higher n-back level. The observed alpha-theta power changes are consistent with visual n-back paradigms suggesting general oscillatory correlates of WM processing load. Speech entrainment was measured as a linear mapping between the envelope of the speech signal and low-frequency cortical activity (< 13 Hz). We found that increases in both types of WM load (background noise and n-back level) decreased cortical speech envelope entrainment. Although entrainment persisted under high load, our results suggest a top-down influence of WM processing on cortical speech entrainment. © 2018 The Authors. European Journal of Neuroscience published by Federation of European Neuroscience Societies and John Wiley & Sons Ltd.

Admixture compatibility of alternative supplementary cementitious materials for pavement and structural concrete.

DOT National Transportation Integrated Search

2014-08-01

The objectives of this research project were: (1) to gain a better understanding about the interaction among alternative SCMS and : chemical admixtures in Portland cement mixtures; and (2) to facilitate implementation of alternative SCMs in transport...

Auditory priming improves neural synchronization in auditory-motor entrainment.

PubMed

Crasta, Jewel E; Thaut, Michael H; Anderson, Charles W; Davies, Patricia L; Gavin, William J

2018-05-22

Neurophysiological research has shown that auditory and motor systems interact during movement to rhythmic auditory stimuli through a process called entrainment. This study explores the neural oscillations underlying auditory-motor entrainment using electroencephalography. Forty young adults were randomly assigned to one of two control conditions, an auditory-only condition or a motor-only condition, prior to a rhythmic auditory-motor synchronization condition (referred to as combined condition). Participants assigned to the auditory-only condition auditory-first group) listened to 400 trials of auditory stimuli presented every 800 ms, while those in the motor-only condition (motor-first group) were asked to tap rhythmically every 800 ms without any external stimuli. Following their control condition, all participants completed an auditory-motor combined condition that required tapping along with auditory stimuli every 800 ms. As expected, the neural processes for the combined condition for each group were different compared to their respective control condition. Time-frequency analysis of total power at an electrode site on the left central scalp (C3) indicated that the neural oscillations elicited by auditory stimuli, especially in the beta and gamma range, drove the auditory-motor entrainment. For the combined condition, the auditory-first group had significantly lower evoked power for a region of interest representing sensorimotor processing (4-20 Hz) and less total power in a region associated with anticipation and predictive timing (13-16 Hz) than the motor-first group. Thus, the auditory-only condition served as a priming facilitator of the neural processes in the combined condition, more so than the motor-only condition. Results suggest that even brief periods of rhythmic training of the auditory system leads to neural efficiency facilitating the motor system during the process of entrainment. These findings have implications for interventions

Effect of an entrained air bubble on the acoustics of an ink channel.

PubMed

Jeurissen, Roger; de Jong, Jos; Reinten, Hans; van den Berg, Marc; Wijshoff, Herman; Versluis, Michel; Lohse, Detlef

2008-05-01

Piezo-driven inkjet systems are very sensitive to air entrapment. The entrapped air bubbles grow by rectified diffusion in the ink channel and finally result in nozzle failure. Experimental results on the dynamics of fully grown air bubbles are presented. It is found that the bubble counteracts the pressure buildup necessary for the droplet formation. The channel acoustics and the air bubble dynamics are modeled. For good agreement with the experimental data it is crucial to include the confined geometry into the model: The air bubble acts back on the acoustic field in the channel and thus on its own dynamics. This two-way coupling limits further bubble growth and thus determines the saturation size of the bubble.

Experimental Exploration of Scale Effects and Factors Controlling Bed Load Sediment Entrainment

NASA Astrophysics Data System (ADS)

Fathel, S. L.; Furbish, D. J.; Schmeeckle, M. W.

2015-12-01

Detailed measurements of individual sand grains moving on a streambed allow us to obtain a deeper understanding of the characteristics of incipient motion and evaluate spatial and temporal trends in particle entrainment. We use bed load particle motions measured from high-speed imaging (250 Hz) of uniform, coarse grained sand from two flume experiments, which have different mean fluid velocities near the bed. Particle tracking reveals more than 6,000 entrainment events in 5 seconds (Run 1) and over 5,000 events in 2 seconds (Run 2). We manually track particles, at sub-pixel resolution, from entrainment to either disentrainment or until the particle leaves the frame. Within these experiments we find that over 90% of all initial motions contain a cross-stream component of motion where approximately a third of the motions may be cross-stream dominated, and furthermore, up to 7% of the motions may be negative (i.e. move backwards). We propose that the variability in the direction of initial motion is, in part, a product of the bed topography, where we find that with increasing mean fluid velocity, the initial motion of the sand particles are less sensitive to bed topography, and are more likely to be dominated by the fluid. The high resolution of this data set, containing positions of particles measured start-to-stop, allows us to calculate the characteristic timescale required for a particle to become streamwise, or fluid, dominated in these systems. We also evaluate these data to further show whether the nature of entrainment is a memoryless, uncorrelated process, a correlated process related to the number of particles already in motion (i.e., possibly reflecting collective entrainment), or some combination of the two. This work suggests that the probability of entrainment depends on physical factors such as bed microtopography and the magnitude of the fluid velocity, in addition to varying with space and time scales.

Frequency modulation entrains slow neural oscillations and optimizes human listening behavior

PubMed Central

Henry, Molly J.; Obleser, Jonas

2012-01-01

The human ability to continuously track dynamic environmental stimuli, in particular speech, is proposed to profit from “entrainment” of endogenous neural oscillations, which involves phase reorganization such that “optimal” phase comes into line with temporally expected critical events, resulting in improved processing. The current experiment goes beyond previous work in this domain by addressing two thus far unanswered questions. First, how general is neural entrainment to environmental rhythms: Can neural oscillations be entrained by temporal dynamics of ongoing rhythmic stimuli without abrupt onsets? Second, does neural entrainment optimize performance of the perceptual system: Does human auditory perception benefit from neural phase reorganization? In a human electroencephalography study, listeners detected short gaps distributed uniformly with respect to the phase angle of a 3-Hz frequency-modulated stimulus. Listeners’ ability to detect gaps in the frequency-modulated sound was not uniformly distributed in time, but clustered in certain preferred phases of the modulation. Moreover, the optimal stimulus phase was individually determined by the neural delta oscillation entrained by the stimulus. Finally, delta phase predicted behavior better than stimulus phase or the event-related potential after the gap. This study demonstrates behavioral benefits of phase realignment in response to frequency-modulated auditory stimuli, overall suggesting that frequency fluctuations in natural environmental input provide a pacing signal for endogenous neural oscillations, thereby influencing perceptual processing. PMID:23151506

Large Eddy Simulation of Heat Entrainment Under Arctic Sea Ice

NASA Astrophysics Data System (ADS)

Ramudu, Eshwan; Gelderloos, Renske; Yang, Di; Meneveau, Charles; Gnanadesikan, Anand

2018-01-01

Arctic sea ice has declined rapidly in recent decades. The faster than projected retreat suggests that free-running large-scale climate models may not be accurately representing some key processes. The small-scale turbulent entrainment of heat from the mixed layer could be one such process. To better understand this mechanism, we model the Arctic Ocean's Canada Basin, which is characterized by a perennial anomalously warm Pacific Summer Water (PSW) layer residing at the base of the mixed layer and a summertime Near-Surface Temperature Maximum (NSTM) within the mixed layer trapping heat from solar radiation. We use large eddy simulation (LES) to investigate heat entrainment for different ice-drift velocities and different initial temperature profiles. The value of LES is that the resolved turbulent fluxes are greater than the subgrid-scale fluxes for most of our parameter space. The results show that the presence of the NSTM enhances heat entrainment from the mixed layer. Additionally there is no PSW heat entrained under the parameter space considered. We propose a scaling law for the ocean-to-ice heat flux which depends on the initial temperature anomaly in the NSTM layer and the ice-drift velocity. A case study of "The Great Arctic Cyclone of 2012" gives a turbulent heat flux from the mixed layer that is approximately 70% of the total ocean-to-ice heat flux estimated from the PIOMAS model often used for short-term predictions. Present results highlight the need for large-scale climate models to account for the NSTM layer.

Activation analysis of admixtures in certain semiconductive materials

NASA Technical Reports Server (NTRS)

Artyukhin, P. I.; Gilbert, E. P.; Pronin, V. A.

1978-01-01

The use of extractions and chromatographic operations to separate macrobases, and to divide elements into groups convenient for gamma-spectrometric analysis is discussed. Methods are described for the activation detection of some impurities in silicon, arsenic, thallium, and trichloromethylsilane, on the basis of the extraction properties of bis(2-chlorethyl ether) and dimethylbenzylalkylammonium chloride. A schematic diagram of the extraction separation of elements-admixture is presented showing the aqueous and organic phases. The content percentage of the various elements are given in tables.

Rhythm as a Coordinating Device: Entrainment With Disordered Speech

PubMed Central

Borrie, Stephanie A.; Liss, Julie M.

2014-01-01

Purpose The rhythmic entrainment (coordination) of behavior during human interaction is a powerful phenomenon, considered essential for successful communication, supporting social and emotional connection, and facilitating sense-making and information exchange. Disruption in entrainment likely occurs in conversations involving those with speech and language impairment, but its contribution to communication disorders has not been defined. As a first step to exploring this phenomenon in clinical populations, the present investigation examined the influence of disordered speech on the speech production properties of healthy interactants. Method Twenty-nine neurologically healthy interactants participated in a quasi-conversational paradigm, in which they read sentences (response) in response to hearing prerecorded sentences (exposure) from speakers with dysarthria (n = 4) and healthy controls (n = 4). Recordings of read sentences prior to the task were also collected (habitual). Results Findings revealed that interactants modified their speaking rate and pitch variation to align more closely with the disordered speech. Production shifts in these rhythmic properties, however, remained significantly different from corresponding properties in dysarthric speech. Conclusion Entrainment offers a new avenue for exploring speech and language impairment, addressing a communication process not currently explained by existing frameworks. This article offers direction for advancing this line of inquiry. PMID:24686410

Wide disparity in genetic admixture among Mexican Americans from San Antonio, TX

PubMed Central

Beuten, Joke; Halder, Indrani; Fowler, Sharon P.; Gőring, Harald H.H.; Duggirala, Ravindranath; Arya, Rector; Thompson, Ian M.; Leach, Robin J.; Lehman, Donna M.

2011-01-01

SUMMARY We studied 706 participants of the San Antonio Family Diabetes Study (SAFDS) and 586 male samples from the San Antonio Center for Biomarkers of Risk of Prostate Cancer (SABOR) and used 64 ancestry informative markers to compare admixture proportions in the two groups. Existence of population substructure was demonstrated by the excess association of unlinked markers. Further, the ancestral proportions differed significantly between the two study groups. In the SAFDS sample, the proportions were estimated at 50.2± 0.6% European, 46.4 ± 0.6% Native American, and 3.1 ± 0.2% West African. For the SABOR study sample, the proportions were 58.9 ± 0.7%, 38.2 ± 0.7% and 2.9 ± 0.2%, respectively. Additionally, in the SAFDS subjects a highly significant negative correlation was found between individual Native American ancestry and skin reflectance (R2=0.07, p=0.00006). The correlation was stronger in males than in females but clearly show that ancestry only accounts for a small percentage of the variation in skin color and, conversely, that skin reflectance is not a robust surrogate for genetic admixture. Furthermore, a substantial difference in substructure is present in the two cohorts of Mexican American subjects from the San Antonio area in Texas, which emphasizes that genetic admixture estimates should be accounted for in association studies, even for geographically related subjects. PMID:21592109

Entrainment and phase-shifting by centrifugation abolished in mice lacking functional vestibular input

NASA Astrophysics Data System (ADS)

Fuller, Charles; Ringgold, Kristyn

The circadian pacemaker can be phase shifted and entrained by appropriately timed locomotor activity, however the mechanism(s) involved remain poorly understood. Recent work in our lab has suggested the involvement of the vestibular otolith organs in activity-induced changes within the circadian timing system (CTS). For example, we have shown that changes in circa-dian period and phase in response to locomotion (wheel running) require functional macular gravity receptors. We believe the neurovestibular system is responsible for the transduction of gravitoinertial input associated with the types of locomotor activity that are known to af-fect the pacemaker. This study investigated the hypothesis that daily, timed gravitoinertial stimuli, as applied by centrifugation. would induce entrainment of circadian rhythms in only those animals with functional afferent vestibular input. To test this hypothesis, , chemically labyrinthectomized (Labx) mice, mice lacking macular vestibular input (head tilt or hets) and wildtype (WT) littermates were implanted i.p. with biotelemetry and individually housed in a 4-meter diameter centrifuge in constant darkness (DD). After 2 weeks in DD, the mice were exposed daily to 2G via centrifugation from 1000-1200 for 9 weeks. Only WT mice showed entrainment to the daily 2G pulse. The 2G pulse was then re-set to occur at 1200-1400 for 4 weeks. Only WT mice demonstrated a phase shift in response to the re-setting of the 2G pulse and subsequent re-entrainment to the new centrifugation schedule. These results provide further evidence that gravitoinertial stimuli require a functional vestibular system to both en-train and phase shift the CTS. Entrainment among only WT mice supports the role of macular gravity receptive cells in modulation of the CTS while also providing a functional mechanism by which gravitoinertial stimuli, including locomotor activity, may affect the pacemaker.

Temporal Organization of the Sleep-Wake Cycle under Food Entrainment in the Rat

PubMed Central

Castro-Faúndez, Javiera; Díaz, Javier; Ocampo-Garcés, Adrián

2016-01-01

Study Objectives: To analyze the temporal organization of the sleep-wake cycle under food entrainment in the rat. Methods: Eighteen male Sprague-Dawley rats were chronically implanted for polysomnographic recording. During the baseline (BL) protocol, rats were recorded under a 12:12 light-dark (LD) schedule in individual isolation chambers with food and water ad libitum. Food entrainment was performed by means of a 4-h food restriction (FR) protocol starting at photic zeitgeber time 5. Eight animals underwent a 3-h phase advance of the FR protocol (A-FR). We compared the mean curves and acrophases of wakefulness, NREM sleep, and REM sleep under photic and food entrainment and after a phase advance in scheduled food delivery. We further evaluated the dynamics of REM sleep homeostasis and the NREM sleep EEG delta wave profile. Results: A prominent food-anticipatory arousal interval was observed after nine or more days of FR, characterized by increased wakefulness and suppression of REM sleep propensity and dampening of NREM sleep EEG delta activity. REM sleep exhibited a robust nocturnal phase preference under FR that was not explained by a nocturnal REM sleep rebound. The mean curve of sleep-wake states and NREM sleep EEG delta activity remained phase-locked to the timing of meals during the A-FR protocol. Conclusions: Our results support the hypothesis that under food entrainment, the sleep-wake cycle is coupled to a food-entrainable oscillator (FEO). Our findings suggest an unexpected interaction between FEO output and NREM sleep EEG delta activity generators. Citation: Castro-Faúndez J, Díaz J, Ocampo-Garcés A. Temporal organization of the sleep-wake cycle under food entrainment in the rat. SLEEP 2016;39(7):1451–1465. PMID:27091526

Endogenous Delta/Theta Sound-Brain Phase Entrainment Accelerates the Buildup of Auditory Streaming.

PubMed

Riecke, Lars; Sack, Alexander T; Schroeder, Charles E

2015-12-21

In many natural listening situations, meaningful sounds (e.g., speech) fluctuate in slow rhythms among other sounds. When a slow rhythmic auditory stream is selectively attended, endogenous delta (1‒4 Hz) oscillations in auditory cortex may shift their timing so that higher-excitability neuronal phases become aligned with salient events in that stream [1, 2]. As a consequence of this stream-brain phase entrainment [3], these events are processed and perceived more readily than temporally non-overlapping events [4-11], essentially enhancing the neural segregation between the attended stream and temporally noncoherent streams [12]. Stream-brain phase entrainment is robust to acoustic interference [13-20] provided that target stream-evoked rhythmic activity can be segregated from noncoherent activity evoked by other sounds [21], a process that usually builds up over time [22-27]. However, it has remained unclear whether stream-brain phase entrainment functionally contributes to this buildup of rhythmic streams or whether it is merely an epiphenomenon of it. Here, we addressed this issue directly by experimentally manipulating endogenous stream-brain phase entrainment in human auditory cortex with non-invasive transcranial alternating current stimulation (TACS) [28-30]. We assessed the consequences of these manipulations on the perceptual buildup of the target stream (the time required to recognize its presence in a noisy background), using behavioral measures in 20 healthy listeners performing a naturalistic listening task. Experimentally induced cyclic 4-Hz variations in stream-brain phase entrainment reliably caused a cyclic 4-Hz pattern in perceptual buildup time. Our findings demonstrate that strong endogenous delta/theta stream-brain phase entrainment accelerates the perceptual emergence of task-relevant rhythmic streams in noisy environments. Copyright © 2015 Elsevier Ltd. All rights reserved.

Effects of chemical and mineral admixtures on performance of Florida structural concrete.

DOT National Transportation Integrated Search

2016-06-21

Several mineral and chemical admixtures, commonly used in Florida structural concrete, were studied here to assess their effect on the fresh and hardened properties of cementitious systems. Pozzolans examined here were Class F fly ash, silica fume, b...

The radiative versus entraining effects of overlying humidity on the Lagrangian evolution of subtropical stratocumulus

NASA Astrophysics Data System (ADS)

Eastman, R. M.; Wood, R.

2017-12-01

This study observes the 24-hour Lagrangian evolution of stratocumulus cloud amount and PBL depth in four eastern subtropical ocean basins: the NE Pacific, SE Pacific, SE Atlantic, and E Indian. Nearly 170,000 trajectories are computed using the 2-D wind field at 925mb and cloud properties are sampled along these trajectories twice daily as the A-Train satellite constellation passes overhead. Concurrent measurements of the overlying humidity and temperature profiles are interpolated from the ERA-Interim reanalysis grids. Cloud properties are sampled by MODIS and a measure of planetary boundary layer (PBL) depth is calculated using MODIS cloud top temperatures, CALIPSO lidar observations of cloud top heights, and ERA-Interim sea surface temperatures. High humidity overlying the PBL can reduce cloud top cooling by counteracting radiative cooling and by reducing evaporation within the entrainment zone. Both of these effects can slow the entrainment rate and change cloud evolution. To discern which effect is more important the humidity profile is broken into two distinct components: the specific humidity directly above the inversion, which is entraining into the boundary layer, and the column of specific humidity above that layer, which is radiatively interacting with the PBL, but not directly entraining. These two measures of humidity are compared in the Lagrangian framework. Results suggest that humidity above the PBL has a stronger effect on the Lagrangian PBL deepening rate compared to lower tropospheric stability. A comparison of PBL deepening rates driven by the entraining humidity versus the radiating humidity shows that the radiative effects of overlying humidity are dominant with respect to entrainment. However, the entraining effects of humidity are more important in prolonging cloud lifetime.

Particle impactor assembly for size selective high volume air sampler

DOEpatents

Langer, Gerhard

1988-08-16

Air containing entrained particulate matter is directed through a plurality of parallel, narrow, vertically oriented impactor slots of an inlet element toward an adjacently located, relatively large, dust impaction surface preferably covered with an adhesive material. The air flow turns over the impaction surface, leaving behind the relatively larger particles according to the human thoracic separation system and passes through two elongate exhaust apertures defining the outer bounds of the impaction collection surface to pass through divergent passages which slow down and distribute the air flow, with entrained smaller particles, over a fine filter element that separates the fine particles from the air. The elongate exhaust apertures defining the impaction collection surface are spaced apart by a distance greater than the lengths of elongate impactor slots in the inlet element and are oriented to be normal thereto. By appropriate selection of dimensions and the number of impactor slots air flow through the inlet element is provided a nonuniform velocity distribution with the lower velocities being obtained near the center of the impactor slots, in order to separate out particles larger than a certain predetermined size on the impaction collection surface. The impaction collection surface, even in a moderately sized apparatus, is thus relatively large and permits the prolonged sampling of air for periods extending to four weeks.

Auditory-motor entrainment and phonological skills: precise auditory timing hypothesis (PATH).

PubMed

Tierney, Adam; Kraus, Nina

2014-01-01

Phonological skills are enhanced by music training, but the mechanisms enabling this cross-domain enhancement remain unknown. To explain this cross-domain transfer, we propose a precise auditory timing hypothesis (PATH) whereby entrainment practice is the core mechanism underlying enhanced phonological abilities in musicians. Both rhythmic synchronization and language skills such as consonant discrimination, detection of word and phrase boundaries, and conversational turn-taking rely on the perception of extremely fine-grained timing details in sound. Auditory-motor timing is an acoustic feature which meets all five of the pre-conditions necessary for cross-domain enhancement to occur (Patel, 2011, 2012, 2014). There is overlap between the neural networks that process timing in the context of both music and language. Entrainment to music demands more precise timing sensitivity than does language processing. Moreover, auditory-motor timing integration captures the emotion of the trainee, is repeatedly practiced, and demands focused attention. The PATH predicts that musical training emphasizing entrainment will be particularly effective in enhancing phonological skills.

On the role and origin of isochrony in human rhythmic entrainment.

PubMed

Merker, Bjorn H; Madison, Guy S; Eckerdal, Patricia

2009-01-01

Wherever human beings live, and however they may organise their affairs, they gather from time to time to sing and dance together, often in a ritual setting. In doing so they synchronise their voices and bodily movements to a shared, repeating interval of time, the musical pulse, beat or tactus. We take this capacity to "entrain" to an evenly paced stimulus (isochrony) so much for granted that it may come as a surprise to learn that from a biological point of view such behaviour is exceptional. But it is not altogether unique. There are a number of other species, none of them closely related to humans, that also engage in group synchrony of behaviour through entrainment to an isochronous pulse. Despite their evolutionary distance from us their life circumstances throw an interesting light on the possible origin and nature of our own entrainment capacity. Here we consider this capacity in terms of its possible origin, functional mechanisms, and ontogenetic development.

Entrainment and thrust augmentation in pulsatile ejector flows

NASA Technical Reports Server (NTRS)

Sarohia, V.; Bernal, L.; Bui, T.

1981-01-01

This study comprised direct thrust measurements, flow visualization by use of a spark shadowgraph technique, and mean and fluctuating velocity measurements with a pitot tube and linearized constant temperature hot-wire anemometry respectively. A gain in thrust of as much as 10 to 15% was observed for the pulsatile ejector flow as compared to the steady flow configuration. From the velocity profile measurements, it is concluded that this enhanced augmentation for pulsatile flow as compared to a nonpulsatile one was accomplished by a corresponding increased entrainment by the primary jet flow. It is also concluded that the augmentation and total entrainment by a constant area ejector critically depends upon the inlet geometry of the ejector. Experiments were performed to evaluate the influence of primary jet to ejector area ratio, ejector length, and presence of a diffuser on pulsatile ejector performance.

The controls and consequences of substrate entrainment by pyroclastic density currents at Mount St Helens, Washington (USA)

NASA Astrophysics Data System (ADS)

Pollock, N. M.; Brand, B. D.; Roche, O.

2016-10-01

Evidence in the deposits from the May 18, 1980 eruption at Mount St Helens demonstrates that pyroclastic density currents (PDCs) produced during the afternoon of the eruption became intermittently erosive. Using detailed componentry and granulometry we constrain the sources for lithic blocks in the deposits and identify deposits from PDCs that became locally erosive. The componentry of the lithics in the fall deposits is used as a proxy for vent erosion and assumed to represent the starting componentry for PDCs prior to entrainment from any other source. We find little evidence in the PDC deposits nearest to the base of the volcano for entrainment from the steep flanks; however, significant evidence indicates that PDCs eroded into the debris avalanche hummocks, suggesting that entrainment is favored as PDCs interact with highly irregular topography. Evidence for locally entrained material downstream from debris avalanche hummocks decreases with height in the outcrop, suggesting that less entrainment occurs as local relief decreases and upstream topography is buried. The prevalence of lithofacies containing locally entrained material at the base of unit contacts and only 10s of meters downstream from debris avalanche hummocks suggests that the majority of entrainment occurs at or near the head of the current. Occasionally, entrained material is located high above unit contacts and deposited well after the initial head of the current is inferred to have passed, indicating that entrainment can occur during periods of non-deposition either from the semi-sustained body of the current or from a pulsating current. Additionally, self-channelization of PDCs, either by levee deposition or scouring into earlier PDC deposits, occurs independently of interaction with topographic obstacles and can affect carrying capacity and runout distance. While we begin to explore the mechanisms and effects of erosion on current dynamics, additional laboratory and numerical studies are

Assessment of the Effects of Entrainment and Wind Shear on Nuclear Cloud Rise Modeling

NASA Astrophysics Data System (ADS)

Zalewski, Daniel; Jodoin, Vincent

2001-04-01

Accurate modeling of nuclear cloud rise is critical in hazard prediction following a nuclear detonation. This thesis recommends improvements to the model currently used by DOD. It considers a single-term versus a three-term entrainment equation, the value of the entrainment and eddy viscous drag parameters, as well as the effect of wind shear in the cloud rise following a nuclear detonation. It examines departures from the 1979 version of the Department of Defense Land Fallout Interpretive Code (DELFIC) with the current code used in the Hazard Prediction and Assessment Capability (HPAC) code version 3.2. The recommendation for a single-term entrainment equation, with constant value parameters, without wind shear corrections, and without cloud oscillations is based on both a statistical analysis using 67 U.S. nuclear atmospheric test shots and the physical representation of the modeling. The statistical analysis optimized the parameter values of interest for four cases: the three-term entrainment equation with wind shear and without wind shear as well as the single-term entrainment equation with and without wind shear. The thesis then examines the effect of cloud oscillations as a significant departure in the code. Modifications to user input atmospheric tables are identified as a potential problem in the calculation of stabilized cloud dimensions in HPAC.

Entrainment to the CIECAM02 and CIELAB colour appearance models in the human cortex.

PubMed

Thwaites, Andrew; Wingfield, Cai; Wieser, Eric; Soltan, Andrew; Marslen-Wilson, William D; Nimmo-Smith, Ian

2018-04-01

In human visual processing, information from the visual field passes through numerous transformations before perceptual attributes such as colour are derived. The sequence of transforms involved in constructing perceptions of colour can be approximated by colour appearance models such as the CIE (2002) colour appearance model, abbreviated as CIECAM02. In this study, we test the plausibility of CIECAM02 as a model of colour processing by looking for evidence of its cortical entrainment. The CIECAM02 model predicts that colour is split in to two opposing chromatic components, red-green and cyan-yellow (termed CIECAM02-a and CIECAM02-b respectively), and an achromatic component (termed CIECAM02-A). Entrainment of cortical activity to the outputs of these components was estimated using measurements of electro- and magnetoencephalographic (EMEG) activity, recorded while healthy subjects watched videos of dots changing colour. We find entrainment to chromatic component CIECAM02-a at approximately 35 ms latency bilaterally in occipital lobe regions, and entrainment to achromatic component CIECAM02-A at approximately 75 ms latency, also bilaterally in occipital regions. For comparison, transforms from a less physiologically plausible model (CIELAB) were also tested, with no significant entrainment found. Copyright © 2018 Elsevier Ltd. All rights reserved.

Comparison of entrainment rates from a tank experiment with results using the one-dimensional turbulence model.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerstein, Alan R.; Sayler, B. J.; Wunsch, S.

2010-05-01

Recent work suggests that cloud effects remain one of the largest sources of uncertainty in model-based estimates of climate sensitivity. In particular, the entrainment rate in stratocumulus-topped mixed layers needs better models. More than thirty years ago a clever laboratory experiment was conducted by McEwan and Paltridge to examine an analog of the entrainment process at the top of stratiform clouds. Sayler and Breidenthal extended this pioneering work and determined the effect of the Richardson number on the dimensionless entrainment rate. The experiments gave hints that the interaction between molecular effects and the one-sided turbulence seems to be crucial formore » understanding entrainment. From the numerical point of view large-eddy simulation (LES) does not allow explicitly resolving all the fine scale processes at the entrainment interface. Direct numerical simulation (DNS) is limited due to the Reynolds number and is not the tool of choice for parameter studies. Therefore it is useful to investigate new modeling strategies, such as stochastic turbulence models which allow sufficient resolution at least in one dimension while having acceptable run times. We will present results of the One-Dimensional Turbulence stochastic simulation model applied to the experimental setup of Sayler and Breidenthal. The results on radiatively induced entrainment follow quite well the scaling of the entrainment rate with the Richardson number that was experimentally found for a set of trials. Moreover, we investigate the influence of molecular effects, the fluids optical properties, and the artifact of parasitic turbulence experimentally observed in the laminar layer. In the simulations the parameters are varied systematically for even larger ranges than in the experiment. Based on the obtained results a more complex parameterization of the entrainment rate than currently discussed in the literature seems to be necessary.« less

Entrainment and motor emulation approaches to joint action: Alternatives or complementary approaches?

PubMed

Colling, Lincoln J; Williamson, Kellie

2014-01-01

Joint actions, such as music and dance, rely crucially on the ability of two, or more, agents to align their actions with great temporal precision. Within the literature that seeks to explain how this action alignment is possible, two broad approaches have appeared. The first, what we term the entrainment approach, has sought to explain these alignment phenomena in terms of the behavioral dynamics of the system of two agents. The second, what we term the emulator approach, has sought to explain these alignment phenomena in terms of mechanisms, such as forward and inverse models, that are implemented in the brain. They have often been pitched as alternative explanations of the same phenomena; however, we argue that this view is mistaken, because, as we show, these two approaches are engaged in distinct, and not mutually exclusive, explanatory tasks. While the entrainment approach seeks to uncover the general laws that govern behavior the emulator approach seeks to uncover mechanisms. We argue that is possible to do both and that the entrainment approach must pay greater attention to the mechanisms that support the behavioral dynamics of interest. In short, the entrainment approach must be transformed into a neuroentrainment approach by adopting a mechanistic view of explanation and by seeking mechanisms that are implemented in the brain.

Entrainment of bed sediment by debris flows: results from large-scale experiments

USGS Publications Warehouse

Reid, Mark E.; Iverson, Richard M.; Logan, Matthew; LaHusen, Richard G.; Godt, Jonathan W.; Griswold, Julie P.

2011-01-01

When debris flows grow by entraining sediment, they can become especially hazardous owing to increased volume, speed, and runout. To investigate the entrainment process, we conducted eight largescale experiments in the USGS debris-flow flume. In each experiment, we released a 6 m3 water-saturated debris flow across a 47-m long, ~12-cm thick bed of partially saturated sediment lining the 31º flume. Prior to release, we used low-intensity overhead sprinkling and real-time monitoring to control the bed-sediment wetness. As each debris flow descended the flume, we measured the evolution of flow thickness, basal total normal stress, basal pore-fluid pressure, and sediment scour depth. When debris flows traveled over relatively dry sediment, net scour was minimal, but when debris flows traveled over wetter sediment (volumetric water content > 0.22), debris-flow volume grew rapidly and flow speed and runout were enhanced. Data from scour sensors showed that entrainment occurred by rapid (5-10 cm/s), progressive scour rather than by mass failure at depth. Overriding debris flows rapidly generated high basal pore-fluid pressures when they loaded and deformed bed sediment, and in wetter beds these pressures approached lithostatic levels. Reduction of intergranular friction within the bed sediment thereby enhanced scour efficiency, entrainment, and runout.

Influence of aggregate type and chemical admixtures on frost resistance of lightweight mortars

NASA Astrophysics Data System (ADS)

Klimek, Beata; Widomski, Marcin K.; Barnat-Hunek, Danuta

2017-07-01

The aim of studies presented in this paper covered analyses of type of lightweight aggregate as well as aeration and hydrophobic admixtures influence on absorbability and frost resistance of heat-insulating mortars applied in the energy-efficient construction. In the presented research, expanded perlite (EP) and expanded clay aggregate (ceramsite) were used as lightweight aggregates. The measurements of the basic mechanical and physical characteristics of tested mortars were performed, including, inter alia, compressive and flexural tensile strength, density, effective (open) and total porosity, absorbability, thermal conductivity as well as frost resistance after 25 cycles of freezing and thawing. Substitution of some part of sand fraction by the lightweight aggregates, expanded clay aggregate or perlite, resulted in changes in physical properties of the tested mortars. The observed decrease in density (specific weight), coefficient of heat transport and strength parameters were simultaneously accompanied by the increase in absorbability. Researches concerning frost resistance of mortars containing ceramsite and perlite showed the improved frost resistance of mortar utilizing perlite. Most of the tested mortars shoved satisfactory frost resistance, only samples of mortar containing ceramsite and aeration admixture were destroyed. The significant influence of aerating admixture on frost resistance of mortars was determined. Hydrophobic siloxanes addition failed to adequately protect the mortars against frost erosion, regardless the type of applied aggregate.

Multilocus Bayesian Estimates of Intra-Oceanic Genetic Differentiation, Connectivity, and Admixture in Atlantic Swordfish (Xiphias gladius L.)

PubMed Central

Smith, Brad L.; Lu, Ching-Ping; García-Cortés, Blanca; Viñas, Jordi; Yeh, Shean-Ya; Alvarado Bremer, Jaime R.

2015-01-01

Previous genetic studies of Atlantic swordfish (Xiphias gladius L.) revealed significant differentiation among Mediterranean, North Atlantic and South Atlantic populations using both mitochondrial and nuclear DNA data. However, limitations in geographic sampling coverage, and the use of single loci, precluded an accurate placement of boundaries and of estimates of admixture. In this study, we present multilocus analyses of 26 single nucleotide polymorphisms (SNPs) within 10 nuclear genes to estimate population differentiation and admixture based on the characterization of 774 individuals representing North Atlantic, South Atlantic, and Mediterranean swordfish populations. Pairwise F ST values, AMOVA, PCoA, and Bayesian individual assignments support the differentiation of swordfish inhabiting these three basins, but not the current placement of the boundaries that separate them. Specifically, the range of the South Atlantic population extends beyond 5°N management boundary to 20°N-25°N from 45°W. Likewise the Mediterranean population extends beyond the current management boundary at the Strait of Gibraltar to approximately 10°W. Further, admixture zones, characterized by asymmetric contributions of adjacent populations within samples, are confined to the Northeast Atlantic. While South Atlantic and Mediterranean migrants were identified within these Northeast Atlantic admixture zones no North Atlantic migrants were identified respectively in these two neighboring basins. Owing to both, the characterization of larger number of loci and a more ample spatial sampling coverage, it was possible to provide a finer resolution of the boundaries separating Atlantic swordfish populations than previous studies. Finally, the patterns of population structure and admixture are discussed in the light of the reproductive biology, the known patterns of dispersal, and oceanographic features that may act as barriers to gene flow to Atlantic swordfish. PMID:26057382

Crustal entrainment and pulsar glitches.

PubMed

Chamel, N

2013-01-04

Large pulsar frequency glitches are generally interpreted as sudden transfers of angular momentum between the neutron superfluid permeating the inner crust and the rest of the star. Despite the absence of viscous drag, the neutron superfluid is strongly coupled to the crust due to nondissipative entrainment effects. These effects are shown to severely limit the maximum amount of angular momentum that can possibly be transferred during glitches. In particular, it is found that the glitches observed in the Vela pulsar require an additional reservoir of angular momentum.

Discussion: Numerical study on the entrainment of bed material into rapid landslides

USGS Publications Warehouse

Iverson, Richard M.

2013-01-01

A paper recently published in this journal (Pirulli & Pastor, 2012) uses numerical modelling to study the important problem of entrainment of bed material by landslides. Unfortunately, some of the basic equations employed in the study are flawed, because they violate the principle of linear momentum conservation. Similar errors exist in some other studies of entrainment, and the errors appear to stem from confusion about the role of bed-sediment inertia in differing frames of reference.

Fish-protection devices at unscreened water diversions can reduce entrainment: evidence from behavioural laboratory investigations

PubMed Central

Poletto, Jamilynn B.; Cocherell, Dennis E.; Mussen, Timothy D.; Ercan, Ali; Bandeh, Hossein; Kavvas, M. Levent; Cech, Joseph J.; Fangue, Nann A.

2015-01-01

Diversion (i.e. extraction) of water from rivers and estuaries can potentially affect native wildlife populations if operation is not carefully managed. For example, open, unmodified water diversions can act as a source of injury or mortality to resident or migratory fishes from entrainment and impingement, and can cause habitat degradation and fragmentation. Fish-protection devices, such as exclusion screens, louvres or sensory deterrents, can physically or behaviourally deter fish from approaching or being entrained into water diversions. However, empirical assessment of their efficacy is often lacking or is investigated only for particular economically or culturally important fishes, such as salmonids. The Southern population of anadromous green sturgeon (Acipenser medirostris) is listed as threatened in California, and there is a high density of water diversions located within their native range (the Sacramento–San Joaquin watershed). Coupled with their unique physiology and behaviour compared with many other fishes native to California, the green sturgeon is susceptible to entrainment into diversions and is an ideal species with which to study the efficacy of mitigation techniques. Therefore, we investigated juvenile green sturgeon (188–202 days post-hatch) in the presence of several fish-protection devices to assess behaviour and entrainment risk. Using a large experimental flume (∼500 kl), we found that compared with an open diversion pipe (control), the addition of a trash-rack box, louvre box, or perforated cylinder on the pipe inlet all significantly reduced the proportion of fish that were entrained through the pipe (P = 0.03, P = 0.028, and P = 0.028, respectively). Likewise, these devices decreased entrainment risk during a single movement past the pipe by between 60 and 96%. These fish-protection devices should decrease the risk of fish entrainment during water-diversion activities. PMID:27293725

SEQUENTIAL RADIOCHEMICAL ANALYSIS FOR RUTHENIUM, STRONTIUM AND CESIUM IN ENVIRONMENTAL AIR

EPA Science Inventory

In routine surveillance operations, the radionuclide measurement of air discharged from an operating nuclear facility involves the entrainment of radionuclides on selective filter or absorptive media, and the determination of their gross beta activity. However, a more sensitive t...

Observational study of the relationship between entrainment rate and relative dispersion in deep convective clouds

NASA Astrophysics Data System (ADS)

Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; Liu, Yangang; Zhang, Guang Jun; Luo, Shi

2018-01-01

This study investigates the influence of entrainment rate (λ) on relative dispersion (ε) of cloud droplet size distributions (CDSD) in the 99 growing precipitating deep convective clouds during TOGA-COARE. The results show that entrainment suppresses ε, which is opposite to the traditional understanding that entrainment-mixing broadens CDSD. To examine how the relationship between ε and λ is affected by droplets with different sizes, CDSDs are divided into three portions with droplet radius < 3.75 μm (N1), radius in the range of 3.75-12.75 μm (N2) and 12.75-23.25 μm (N3), respectively. The results indicate that although the droplet concentration at different sizes generally decrease simultaneously as λ increases, the variation of standard deviation (σ) depends mainly on N3, while the mean radius (rm) decreases with decreasing N3, but increases with decreasing N1. So the influence of entrainment on CDSD causes a more dramatical decrease in σ than that in rm, and further leads to the decrease of ε as entrainment enhances. In addition, a conceptual model of CDSD evolution during entrainment-mixing processes is developed to illustrate the possible scenarios entailing different relationships between ε and λ. The number concentration of small droplets and the degree of evaporation of small droplets are found to be key factors that shift the sign (i.e., positive or negative) of the ε-λ relationship.

Observational study of the relationship between entrainment rate and relative dispersion in deep convective clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang

We investigate the influence of entrainment rate (λ) on relative dispersion (ε) of cloud droplet size distributions (CDSD) in the 99 growing precipitating deep convective clouds during TOGA-COARE. The results show that entrainment suppresses ε, which is opposite to the traditional understanding that entrainment-mixing broadens CDSD. To examine how the relationship between ε and λ is affected by droplets with different sizes, CDSDs are divided into three portions with droplet radius < 3.75 μm (N 1), radius in the range of 3.75–12.75 μm (N 2) and 12.75–23.25 μm (N 3), respectively. Our results indicate that although the droplet concentration atmore » different sizes generally decrease simultaneously as λ increases, the variation of standard deviation (σ) depends mainly on N 3, while the mean radius (r m) decreases with decreasing N 3, but increases with decreasing N 1. So the influence of entrainment on CDSD causes a more dramatical decrease in σ than that in r m, and further leads to the decrease of ε as entrainment enhances. In addition, a conceptual model of CDSD evolution during entrainment-mixing processes is developed to illustrate the possible scenarios entailing different relationships between ε and λ. The number concentration of small droplets and the degree of evaporation of small droplets are found to be key factors that shift the sign (i.e., positive or negative) of the ε-λ relationship.« less

Observational study of the relationship between entrainment rate and relative dispersion in deep convective clouds

DOE PAGES

Guo, Xiaohao; Lu, Chunsong; Zhao, Tianliang; ...

2017-09-23

We investigate the influence of entrainment rate (λ) on relative dispersion (ε) of cloud droplet size distributions (CDSD) in the 99 growing precipitating deep convective clouds during TOGA-COARE. The results show that entrainment suppresses ε, which is opposite to the traditional understanding that entrainment-mixing broadens CDSD. To examine how the relationship between ε and λ is affected by droplets with different sizes, CDSDs are divided into three portions with droplet radius < 3.75 μm (N 1), radius in the range of 3.75–12.75 μm (N 2) and 12.75–23.25 μm (N 3), respectively. Our results indicate that although the droplet concentration atmore » different sizes generally decrease simultaneously as λ increases, the variation of standard deviation (σ) depends mainly on N 3, while the mean radius (r m) decreases with decreasing N 3, but increases with decreasing N 1. So the influence of entrainment on CDSD causes a more dramatical decrease in σ than that in r m, and further leads to the decrease of ε as entrainment enhances. In addition, a conceptual model of CDSD evolution during entrainment-mixing processes is developed to illustrate the possible scenarios entailing different relationships between ε and λ. The number concentration of small droplets and the degree of evaporation of small droplets are found to be key factors that shift the sign (i.e., positive or negative) of the ε-λ relationship.« less

Entrainment and mixing in lock-exchange gravity currents using simultaneous velocity-density measurements

NASA Astrophysics Data System (ADS)

Balasubramanian, Sridhar; Zhong, Qiang

2018-05-01

Gravity currents modify their flow characteristics by entraining ambient fluid, which depends on a variety of governing parameters such as the initial density, Δρ, the total initial height of the fluid, H, and the slope of the terrain, α, from where it is released. It is imperative to study the entrainment dynamics of a gravity current in order to have a clear understanding of mixing transitions that govern the flow physics, the velocity mixing layer thickness, δu, and the density mixing layer thickness, δρ. Experiments were conducted in a lock-exchange facility in which the dense fluid was separated from the ambient lighter fluid using a gate. As the gate is released instantaneously, an energy conserving gravity current is formed, for which the only governing parameter is the Reynolds number defined as R e =U/h ν , where U is the front velocity of the gravity current and h is the height of the current. In our study, the bulk Richardson number (inverse of Froude number, Fr), Rib = g/'H Ub2 = 1, takes a constant value for all the experiments, with Ub being the bulk velocity of the current defined as Ub = √{g'H }. Simultaneous particle image velocimetry and planar laser induced fluorescence measurement techniques are employed to get the velocity and density statistics. Using the buoyancy conservation equation, a new flux-based method was formulated for calculating the entrainment coefficient, EF, near the front and head of the propagating gravity current for a Reynolds number range of Re ≈ 485-12 270 used in our experiments. At the head of the current, the results show a mixing transition at Re ≈ 2700 that is attributed to the flow transitioning from weak Holmboe waves to Kelvin-Helmholtz instabilities, in the form of Kelvin-Helmholtz vortex rolls. Following this mixing transition, the entrainment coefficient continued to increase with increasing Reynolds number owing to the occurrence of three-dimensional Kelvin-Helmholtz billows that promote further

Long-term performance of concrete containing hydrated hydraulic lime as an admixture.

DOT National Transportation Integrated Search

1976-01-01

In 1941 two bridges were constructed with decks using concrete incorporating as an experimental feature the use of hydrated lime as an admixture in amounts varying from zero to 12%. After 35 years of service the decks were scheduled for repairs to co...

Secondary Contact and Admixture between Independently Invading Populations of the Western Corn Rootworm, Diabrotica virgifera virgifera in Europe

PubMed Central

Bermond, Gérald; Ciosi, Marc; Lombaert, Eric; Blin, Aurélie; Boriani, Marco; Furlan, Lorenzo; Toepfer, Stefan; Guillemaud, Thomas

2012-01-01

The western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae), is one of the most destructive pests of corn in North America and is currently invading Europe. The two major invasive outbreaks of rootworm in Europe have occurred, in North-West Italy and in Central and South-Eastern Europe. These two outbreaks originated from independent introductions from North America. Secondary contact probably occurred in North Italy between these two outbreaks, in 2008. We used 13 microsatellite markers to conduct a population genetics study, to demonstrate that this geographic contact resulted in a zone of admixture in the Italian region of Veneto. We show that i) genetic variation is greater in the contact zone than in the parental outbreaks; ii) several signs of admixture were detected in some Venetian samples, in a Bayesian analysis of the population structure and in an approximate Bayesian computation analysis of historical scenarios and, finally, iii) allelic frequency clines were observed at microsatellite loci. The contact between the invasive outbreaks in North-West Italy and Central and South-Eastern Europe resulted in a zone of admixture, with particular characteristics. The evolutionary implications of the existence of a zone of admixture in Northern Italy and their possible impact on the invasion success of the western corn rootworm are discussed. PMID:23189184

Estimating mortality rates of adult fish from entrainment through the propellers of river towboats

USGS Publications Warehouse

Gutreuter, S.; Dettmers, J.M.; Wahl, David H.

2003-01-01

We developed a method to estimate mortality rates of adult fish caused by entrainment through the propellers of commercial towboats operating in river channels. The method combines trawling while following towboats (to recover a fraction of the kills) and application of a hydrodynamic model of diffusion (to estimate the fraction of the total kills collected in the trawls). The sampling problem is unusual and required quantifying relatively rare events. We first examined key statistical properties of the entrainment mortality rate estimators using Monte Carlo simulation, which demonstrated that a design-based estimator and a new ad hoc estimator are both unbiased and converge to the true value as the sample size becomes large. Next, we estimated the entrainment mortality rates of adult fishes in Pool 26 of the Mississippi River and the Alton Pool of the Illinois River, where we observed kills that we attributed to entrainment. Our estimates of entrainment mortality rates were 2.52 fish/km of towboat travel (80% confidence interval, 1.00-6.09 fish/km) for gizzard shad Dorosoma cepedianum, 0.13 fish/km (0.00-0.41) for skipjack herring Alosa chrysochloris, and 0.53 fish/km (0.00-1.33) for both shovelnose sturgeon Scaphirhynchus platorynchus and smallmouth buffalo Ictiobus bubalus. Our approach applies more broadly to commercial vessels operating in confined channels, including other large rivers and intracoastal waterways.

Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations

PubMed Central

Frantz, Laurent A F; Madsen, Ole; Megens, Hendrik-Jan; Groenen, Martien A M; Lohse, Konrad

2014-01-01

In many temperate regions, ice ages promoted range contractions into refugia resulting in divergence (and potentially speciation), while warmer periods led to range expansions and hybridization. However, the impact these climatic oscillations had in many parts of the tropics remains elusive. Here, we investigate this issue using genome sequences of three pig (Sus) species, two of which are found on islands of the Sunda-shelf shallow seas in Island South-East Asia (ISEA). A previous study revealed signatures of interspecific admixture between these Sus species (Genome biology,14, 2013, R107). However, the timing, directionality and extent of this admixture remain unknown. Here, we use a likelihood-based model comparison to more finely resolve this admixture history and test whether it was mediated by humans or occurred naturally. Our analyses suggest that interspecific admixture between Sunda-shelf species was most likely asymmetric and occurred long before the arrival of humans in the region. More precisely, we show that these species diverged during the late Pliocene but around 23% of their genomes have been affected by admixture during the later Pleistocene climatic transition. In addition, we show that our method provides a significant improvement over D-statistics which are uninformative about the direction of admixture. PMID:25294645

ENTRAINED-FLOW ADSORPTION OF MERCURY USING ACTIVATED CARBON

EPA Science Inventory

Bench-scale experiments were conducted in a flow reactor to simulate entrained-flow capture of elemental mercury (Hg) by activated carbon. Adsorption of Hg by several commercial activated carbons was examined at different carbon-to-mercury (C:Hg) ratios (by weight) (600:1 - 29000...

Investigation of Mechanism of Action of Modifying Admixtures Based on Products of Petrochemical Synthesis on Concrete Structure

NASA Astrophysics Data System (ADS)

Tukhareli, V. D.; Tukhareli, A. V.; Cherednichenko, T. F.

2017-11-01

The creation of composite materials for generating structural elements with the desired properties has always been and still remains relevant. The basis of a modern concrete technology is the creation of a high-quality artificial stone characterized by low defectiveness and structure stability. Improving the quality of concrete compositions can be achieved by using chemical admixtures from local raw materials which is a very promising task of modern materials’ science for creation of a new generation of concretes. The new generation concretes are high-tech, high-quality, multicomponent concrete mixes and compositions with admixtures that preserve the required properties in service under all operating conditions. The growing complexity of concrete caused by systemic effects that allow you to control the structure formation at all stages of the technology ensures the obtaining of composites with "directional" quality, compositions, structure and properties. The possibility to use the organic fraction of oil refining as a multifunctional hydrophobic-plasticizing admixture in the effective cement concrete is examined.

The Importance of Stochastic Effects for Explaining Entrainment in the Zebrafish Circadian Clock.

PubMed

Heussen, Raphaela; Whitmore, David

2015-01-01

The circadian clock plays a pivotal role in modulating physiological processes and has been implicated, either directly or indirectly, in a range of pathological states including cancer. Here we investigate how the circadian clock is entrained by external cues such as light. Working with zebrafish cell lines and combining light pulse experiments with simulation efforts focused on the role of synchronization effects, we find that even very modest doses of light exposure are sufficient to trigger some entrainment, whereby a higher light intensity or duration correlates with strength of the circadian signal. Moreover, we observe in the simulations that stochastic effects may be considered an essential feature of the circadian clock in order to explain the circadian signal decay in prolonged darkness, as well as light initiated resynchronization as a strong component of entrainment.

Low-Frequency Cortical Oscillations Entrain to Subthreshold Rhythmic Auditory Stimuli

PubMed Central

Schroeder, Charles E.; Poeppel, David; van Atteveldt, Nienke

2017-01-01

Many environmental stimuli contain temporal regularities, a feature that can help predict forthcoming input. Phase locking (entrainment) of ongoing low-frequency neuronal oscillations to rhythmic stimuli is proposed as a potential mechanism for enhancing neuronal responses and perceptual sensitivity, by aligning high-excitability phases to events within a stimulus stream. Previous experiments show that rhythmic structure has a behavioral benefit even when the rhythm itself is below perceptual detection thresholds (ten Oever et al., 2014). It is not known whether this “inaudible” rhythmic sound stream also induces entrainment. Here we tested this hypothesis using magnetoencephalography and electrocorticography in humans to record changes in neuronal activity as subthreshold rhythmic stimuli gradually became audible. We found that significant phase locking to the rhythmic sounds preceded participants' detection of them. Moreover, no significant auditory-evoked responses accompanied this prethreshold entrainment. These auditory-evoked responses, distinguished by robust, broad-band increases in intertrial coherence, only appeared after sounds were reported as audible. Taken together with the reduced perceptual thresholds observed for rhythmic sequences, these findings support the proposition that entrainment of low-frequency oscillations serves a mechanistic role in enhancing perceptual sensitivity for temporally predictive sounds. This framework has broad implications for understanding the neural mechanisms involved in generating temporal predictions and their relevance for perception, attention, and awareness. SIGNIFICANCE STATEMENT The environment is full of rhythmically structured signals that the nervous system can exploit for information processing. Thus, it is important to understand how the brain processes such temporally structured, regular features of external stimuli. Here we report the alignment of slowly fluctuating oscillatory brain activity to

Fish Oil Accelerates Diet-Induced Entrainment of the Mouse Peripheral Clock via GPR120

PubMed Central

Itokawa, Misa; Nagahama, Hiroki; Ohtsu, Teiji; Furutani, Naoki; Kamagata, Mayo; Yang, Zhi-Hong; Hirasawa, Akira; Tahara, Yu; Shibata, Shigenobu

2015-01-01

The circadian peripheral clock is entrained by restricted feeding (RF) at a fixed time of day, and　insulin secretion regulates RF-induced entrainment of the peripheral clock in mice. Thus, carbohydrate-rich food may be ideal for facilitating RF-induced entrainment, although the role of dietary oils in insulin secretion and RF-induced entrainment has not been described. The soybean oil component of standard mouse chow was substituted with fish or soybean oil containing docosahexaenoic acid (DHA) and/or eicosapentaenoic acid (EPA). Tuna oil (high DHA/EPA), menhaden oil (standard), and DHA/EPA dissolved in soybean oil increased insulin secretion and facilitated RF-induced phase shifts of the liver clock as represented by the bioluminescence rhythms of PER2::LUCIFERASE knock-in mice. In this model, insulin depletion blocked the effect of tuna oil and fish oil had no effect on mice deficient for GPR120, a polyunsaturated fatty acid receptor. These results suggest food containing fish oil or DHA/EPA is ideal for adjusting the peripheral clock. PMID:26161796

Thermally conductive cementitious grout for geothermal heat pump systems

DOEpatents

Allan, Marita

2001-01-01

A thermally conductive cement-sand grout for use with a geothermal heat pump system. The cement sand grout contains cement, silica sand, a superplasticizer, water and optionally bentonite. The present invention also includes a method of filling boreholes used for geothermal heat pump systems with the thermally conductive cement-sand grout. The cement-sand grout has improved thermal conductivity over neat cement and bentonite grouts, which allows shallower bore holes to be used to provide an equivalent heat transfer capacity. In addition, the cement-sand grouts of the present invention also provide improved bond strengths and decreased permeabilities. The cement-sand grouts can also contain blast furnace slag, fly ash, a thermoplastic air entraining agent, latex, a shrinkage reducing admixture, calcium oxide and combinations thereof.

Effects of English admixture and geographic distance on anthropometric variation and genetic structure in 19th-century Ireland.

PubMed

Relethford, J H

1988-05-01

The analysis of anthropometric data often allows investigation of patterns of genetic structure in historical populations. This paper focuses on interpopulational anthropometric variation in seven populations in Ireland using data collected in the 1890s. The seven populations were located within a 120-km range along the west coast of Ireland and include islands and mainland isolates. Two of the populations (the Aran Islands and Inishbofin) have a known history of English admixture in earlier centuries. Ten anthropometric measures (head length, breadth, and height; nose length and breadth; bizygomatic and bigonial breadth; stature; hand length; and forearm length) on 259 adult Irish males were analyzed following age adjustment. Discriminant and canonical variates analysis were used to determine the degree and pattern of among-group variation. Mahalanobis' distance measure, D2, was computed between each pair of populations and compared to distance measures based on geographic distance and English admixture (a binary measure indicating whether either of a pair of populations had historical indications of admixture). In addition, surname frequencies were used to construct distance measures based on random isonymy. Correlations were computed between distance measures, and their probabilities were derived using the Mantel matrix permutation method. English admixture has the greatest effect on anthropometric variation among these populations, followed by geographic distance. The correlation between anthropometric distance and geographic distance is not significant (r = -0.081, P = .590), but the correlation of admixture and anthropometric distance is significant (r = 0.829, P = .047). When the two admixed populations are removed from the analysis the correlation between geographic and anthropometric distance becomes significant (r = 0.718, P = .025). Isonymy distance shows a significant correlation with geographic distance (r = 0.425, P = .046) but not with admixture

Direct-to-Consumer Racial Admixture Tests and Beliefs About Essential Racial Differences

PubMed Central

Phelan, Jo C.; Link, Bruce G.; Zelner, Sarah; Yang, Lawrence H.

2015-01-01

Although at first relatively disinterested in race, modern genomic research has increasingly turned attention to racial variations. We examine a prominent example of this focus—direct-to-consumer racial admixture tests—and ask how information about the methods and results of these tests in news media may affect beliefs in racial differences. The reification hypothesis proposes that by emphasizing a genetic basis for race, thereby reifying race as a biological reality, the tests increase beliefs that whites and blacks are essentially different. The challenge hypothesis suggests that by describing differences between racial groups as continua rather than sharp demarcations, the results produced by admixture tests break down racial categories and reduce beliefs in racial differences. A nationally representative survey experiment (N = 526) provided clear support for the reification hypothesis. The results suggest that an unintended consequence of the genomic revolution may be to reinvigorate age-old beliefs in essential racial differences. PMID:25870464

An admixture analysis of age of onset in agoraphobia.

PubMed

Tibi, Lee; van Oppen, Patricia; Aderka, Idan M; van Balkom, Anton J L M; Batelaan, Neeltje M; Spinhoven, Philip; Penninx, Brenda W; Anholt, Gideon E

2015-07-15

Age of onset is an important epidemiological indicator in characterizing disorders׳ subtypes according to demographic, clinical and psychosocial determinants. While investigated in various psychiatric conditions, age of onset and related characteristics in agoraphobia have yet to be examined. In light of the new diagnostic status in the DSM-5 edition of agoraphobia as independent from panic disorder, research on agoraphobia as a stand-alone disorder is needed. Admixture analysis was used to determine the best-fitting model for the observed ages at onset of 507 agoraphobia patients participating in the Netherlands Study of Depression and Anxiety (age range 18-65). Associations between agoraphobia age of onset and different demographic, clinical and psychosocial determinants were examined using multivariate logistic regression analysis. Admixture analyses identified two distributions of age of onset, with 27 as the cutoff age (≤27; early onset, >27; late onset). Early onset agoraphobia was only independently associated with family history of anxiety disorders (p<0.01) LIMITATIONS: Age of onset was assessed retrospectively, and analyses were based on cross-sectional data. The best distinguishing age of onset cutoff of agoraphobia was found to be 27. Early onset agoraphobia might constitute of a familial subtype. As opposed to other psychiatric disorders, early onset in agoraphobia does not indicate for increased clinical severity and/or disability. Copyright © 2015 Elsevier B.V. All rights reserved.

Listeners feel the beat: entrainment to English and French speech rhythms.

PubMed

Lidji, Pascale; Palmer, Caroline; Peretz, Isabelle; Morningstar, Michele

2011-12-01

Can listeners entrain to speech rhythms? Monolingual speakers of English and French and balanced English-French bilinguals tapped along with the beat they perceived in sentences spoken in a stress-timed language, English, and a syllable-timed language, French. All groups of participants tapped more regularly to English than to French utterances. Tapping performance was also influenced by the participants' native language: English-speaking participants and bilinguals tapped more regularly and at higher metrical levels than did French-speaking participants, suggesting that long-term linguistic experience with a stress-timed language can differentiate speakers' entrainment to speech rhythm.

Phenomenological model of sintering of oxide nuclear fuel with doping admixtures

NASA Astrophysics Data System (ADS)

Baranov, V. G.; Devyatko, Yu. N.; Tenishev, A. V.; Khomyakov, O. V.

2015-12-01

It is shown that a change in the linear dimension of compacted UO2 in the sintering process is associated with its plastic yielding under the action of the forces of residual stress and capillary forces. From the curves of sintering of a fuel with doping admixtures in various gaseous media, its rate of creep is reduced.

Entraining the topology and the dynamics of a network of phase oscillators

NASA Astrophysics Data System (ADS)

Sendiña-Nadal, I.; Leyva, I.; Buldú, J. M.; Almendral, J. A.; Boccaletti, S.

2009-04-01

We show that the topology and dynamics of a network of unsynchronized Kuramoto oscillators can be simultaneously controlled by means of a forcing mechanism which yields a phase locking of the oscillators to that of an external pacemaker in connection with the reshaping of the network’s degree distribution. The entrainment mechanism is based on the addition, at regular time intervals, of unidirectional links from oscillators that follow the dynamics of a pacemaker to oscillators in the pristine graph whose phases hold a prescribed phase relationship. Such a dynamically based rule in the attachment process leads to the emergence of a power-law shape in the final degree distribution of the graph whenever the network is entrained to the dynamics of the pacemaker. We show that the arousal of a scale-free distribution in connection with the success of the entrainment process is a robust feature, characterizing different networks’ initial configurations and parameters.

Robust Entrainment of Circadian Oscillators Requires Specific Phase Response Curves

PubMed Central

Pfeuty, Benjamin; Thommen, Quentin; Lefranc, Marc

2011-01-01

The circadian clocks keeping time in many living organisms rely on self-sustained biochemical oscillations entrained by external cues, such as light, to the 24-h cycle induced by Earth's rotation. However, environmental cues are unreliable due to the variability of habitats, weather conditions, or cue-sensing mechanisms among individuals. A tempting hypothesis is that circadian clocks have evolved so as to be robust to fluctuations in the signal that entrains them. To support this hypothesis, we analyze the synchronization behavior of weakly and periodically forced oscillators in terms of their phase response curve (PRC), which measures phase changes induced by a perturbation applied at different times of the cycle. We establish a general relationship between the robustness of key entrainment properties, such as stability and oscillator phase, on the one hand, and the shape of the PRC as characterized by a specific curvature or the existence of a dead zone, on the other hand. The criteria obtained are applied to computational models of circadian clocks and account for the disparate robustness properties of various forcing schemes. Finally, the analysis of PRCs measured experimentally in several organisms strongly suggests a case of convergent evolution toward an optimal strategy for maintaining a clock that is accurate and robust to environmental fluctuations. PMID:21641300

Influences of the chemical structure of entrainers on the activity coefficients in presence of biodiesel

NASA Astrophysics Data System (ADS)

Mäder, A.; Fleischmann, A.; Fang, Ye; Ruck, W.; Krahl, J.

2012-05-01

In this work we analyzed the strength of the intermolecular forces between biodiesel and the entrainer and their influence on the entrainer's ability to interact with biodiesel. Furthermore we investigated the influence of the chemical structure of an entrainer to the interaction with biodiesel. For this purpose the activity coefficients γ∞ at infinite dilution of acids, aldehydes, ketones and alcohols in biodiesel were measured with the method of headspace gas chromatography (HSGC). Short-chained acids showed the highest interaction of the analyzed entrainers caused by their ability to build hydrogen bonds with biodiesel. Increased chain length of the acids cause reduced interaction with biodiesel, which is mainly due to the higher obstruction of the acid molecule and therefore the reduced ability to build hydrogen bonds with biodiesel. Aldehydes, ketones and alcohols showed lower interaction with biodiesel compared to the acids. Longer-chained alcohols showed increased interaction with biodiesel due to the raised London Forces and an inductive +I effect of the molecule chain.

Sediment entrainment by debris flows: In situ measurements from the headwaters of a steep catchment

USGS Publications Warehouse

McCoy, S.W.; Kean, Jason W.; Coe, Jeffrey A.; Tucker, G.E.; Staley, Dennis M.; Wasklewicz, T.A.

2012-01-01

Debris flows can dramatically increase their volume, and hence their destructive potential, by entraining sediment. Yet quantitative constraints on rates and mechanics of sediment entrainment by debris flows are limited. Using an in situ sensor network in the headwaters of a natural catchment we measured flow and bed properties during six erosive debris-flow events. Despite similar flow properties and thicknesses of bed sediment entrained across all events, time-averaged entrainment rates were significantly faster for bed sediment that was saturated prior to flow arrival compared with rates for sediment that was dry. Bed sediment was entrained from the sediment-surface downward in a progressive fashion and occurred during passage of dense granular fronts as well as water-rich, inter-surge flow.En massefailure of bed sediment along the sediment-bedrock interface was never observed. Large-magnitude, high-frequency fluctuations in total normal basal stress were dissipated within the upper 5 cm of bed sediment. Within this near surface layer, concomitant fluctuations in Coulomb frictional resistance are expected, irrespective of the influence of pore fluid pressure or fluctuations in shear stress. If the near-surface sediment was wet as it was overridden by a flow, additional large-magnitude, high-frequency pore pressure fluctuations were measured in the near-surface bed sediment. These pore pressure fluctuations propagated to depth at subsonic rates and in a diffusive manner. The depth to which large excess pore pressures propagated was typically less than 10 cm, but scaled as (D/fi)0.5, in which D is the hydraulic diffusivity and fi is the frequency of a particular pore pressure fluctuation. Shallow penetration depths of granular-normal-stress fluctuations and excess pore pressures demonstrate that only near-surface bed sediment experiences the full dynamic range of effective-stress fluctuations, and as a result, can be more easily entrained than deeper sediment

The in vitro real-time oscillation monitoring system identifies potential entrainment factors for circadian clocks

PubMed Central

Nakahata, Yasukazu; Akashi, Makoto; Trcka, Daniel; Yasuda, Akio; Takumi, Toru

2006-01-01

Background Circadian rhythms are endogenous, self-sustained oscillations with approximately 24-hr rhythmicity that are manifested in various physiological and metabolic processes. The circadian organization of these processes in mammals is governed by the master oscillator within the suprachiasmatic nuclei (SCN) of the hypothalamus. Recent findings revealed that circadian oscillators exist in most organs, tissues, and even in immortalized cells, and that the oscillators in peripheral tissues are likely to be coordinated by SCN, the master oscillator. Some candidates for endogenous entrainment factors have sporadically been reported, however, their details remain mainly obscure. Results We developed the in vitro real-time oscillation monitoring system (IV-ROMS) by measuring the activity of luciferase coupled to the oscillatory gene promoter using photomultiplier tubes and applied this system to screen and identify factors able to influence circadian rhythmicity. Using this IV-ROMS as the primary screening of entrainment factors for circadian clocks, we identified 12 candidates as the potential entrainment factor in a total of 299 peptides and bioactive lipids. Among them, four candidates (endothelin-1, all-trans retinoic acid, 9-cis retinoic acid, and 13-cis retinoic acid) have already been reported as the entrainment factors in vivo and in vitro. We demonstrated that one of the novel candidates, 15-deoxy-Δ12,14-prostaglandin J2 (15d-PGJ2), a natural ligand of the peroxisome proliferator-activated receptor-γ (PPAR-γ), triggers the rhythmic expression of endogenous clock genes in NIH3T3 cells. Furthermore, we showed that 15d-PGJ2 transiently induces Cry1, Cry2, and Rorα mRNA expressions and that 15d-PGJ2-induced entrainment signaling pathway is PPAR-γ – and MAPKs (ERK, JNK, p38MAPK)-independent. Conclusion Here, we identified 15d-PGJ2 as an entrainment factor in vitro. Using our developed IV-ROMS to screen 299 compounds, we found eight novel and four known

Tracing the origin of the east-west population admixture in the Altai region (Central Asia).

PubMed

González-Ruiz, Mercedes; Santos, Cristina; Jordana, Xavier; Simón, Marc; Lalueza-Fox, Carles; Gigli, Elena; Aluja, Maria Pilar; Malgosa, Assumpció

2012-01-01

A recent discovery of Iron Age burials (Pazyryk culture) in the Altai Mountains of Mongolia may shed light on the mode and tempo of the generation of the current genetic east-west population admixture in Central Asia. Studies on ancient mitochondrial DNA of this region suggest that the Altai Mountains played the role of a geographical barrier between West and East Eurasian lineages until the beginning of the Iron Age. After the 7th century BC, coinciding with Scythian expansion across the Eurasian steppes, a gradual influx of East Eurasian sequences in Western steppes is detected. However, the underlying events behind the genetic admixture in Altai during the Iron Age are still unresolved: 1) whether it was a result of migratory events (eastward firstly, westward secondly), or 2) whether it was a result of a local demographic expansion in a 'contact zone' between European and East Asian people. In the present work, we analyzed the mitochondrial DNA lineages in human remains from Bronze and Iron Age burials of Mongolian Altai. Here we present support to the hypothesis that the gene pool of Iron Age inhabitants of Mongolian Altai was similar to that of western Iron Age Altaians (Russia and Kazakhstan). Thus, this people not only shared the same culture (Pazyryk), but also shared the same genetic east-west population admixture. In turn, Pazyryks appear to have a similar gene pool that current Altaians. Our results further show that Iron Age Altaians displayed mitochondrial lineages already present around Altai region before the Iron Age. This would provide support for a demographic expansion of local people of Altai instead of westward or eastward migratory events, as the demographic event behind the high population genetic admixture and diversity in Central Asia.

Tracing the Origin of the East-West Population Admixture in the Altai Region (Central Asia)

PubMed Central

González-Ruiz, Mercedes; Santos, Cristina; Jordana, Xavier; Simón, Marc; Lalueza-Fox, Carles; Gigli, Elena; Aluja, Maria Pilar; Malgosa, Assumpció

2012-01-01

A recent discovery of Iron Age burials (Pazyryk culture) in the Altai Mountains of Mongolia may shed light on the mode and tempo of the generation of the current genetic east-west population admixture in Central Asia. Studies on ancient mitochondrial DNA of this region suggest that the Altai Mountains played the role of a geographical barrier between West and East Eurasian lineages until the beginning of the Iron Age. After the 7th century BC, coinciding with Scythian expansion across the Eurasian steppes, a gradual influx of East Eurasian sequences in Western steppes is detected. However, the underlying events behind the genetic admixture in Altai during the Iron Age are still unresolved: 1) whether it was a result of migratory events (eastward firstly, westward secondly), or 2) whether it was a result of a local demographic expansion in a ‘contact zone’ between European and East Asian people. In the present work, we analyzed the mitochondrial DNA lineages in human remains from Bronze and Iron Age burials of Mongolian Altai. Here we present support to the hypothesis that the gene pool of Iron Age inhabitants of Mongolian Altai was similar to that of western Iron Age Altaians (Russia and Kazakhstan). Thus, this people not only shared the same culture (Pazyryk), but also shared the same genetic east-west population admixture. In turn, Pazyryks appear to have a similar gene pool that current Altaians. Our results further show that Iron Age Altaians displayed mitochondrial lineages already present around Altai region before the Iron Age. This would provide support for a demographic expansion of local people of Altai instead of westward or eastward migratory events, as the demographic event behind the high population genetic admixture and diversity in Central Asia. PMID:23152818

GWAS and admixture mapping identify different asthma-associated loci in Latinos: The GALA II Study

PubMed Central

Galanter, Joshua M; Gignoux, Christopher R; Torgerson, Dara G; Roth, Lindsey A; Eng, Celeste; Oh, Sam S; Nguyen, Elizabeth A; Drake, Katherine A; Huntsman, Scott; Hu, Donglei; Sen, Saunak; Davis, Adam; Farber, Harold J.; Avila, Pedro C.; Brigino-Buenaventura, Emerita; LeNoir, Michael A.; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodríguez-Cintrón, William; Estrada, Andres Moreno; Mendoza, Karla Sandoval; Winkler, Cheryl A.; Klitz, William; Romieu, Isabelle; London, Stephanie J.; Gilliland, Frank; Martinez, Fernando; Bustamante, Carlos; Williams, L Keoki; Kumar, Rajesh; Rodríguez-Santana, José R.; Burchard, and Esteban G.

2013-01-01

Background Asthma is a complex disease with both genetic and environmental causes. Genome-wide association studies of asthma have mostly involved European populations and replication of positive associations has been inconsistent. Objective To identify asthma-associated genes in a large Latino population with genome-wide association analysis and admixture mapping. Methods Latino children with asthma (n = 1,893) and healthy controls (n = 1,881) were recruited from five sites in the United States: Puerto Rico, New York, Chicago, Houston, and the San Francisco Bay Area. Subjects were genotyped on an Affymetrix World Array IV chip. We performed genome-wide association and admixture mapping to identify asthma-associated loci. Results We identified a significant association between ancestry and asthma at 6p21 (lowest p-value: rs2523924, p < 5 × 10−6). This association replicates in a meta-analysis of the EVE Asthma Consortium (p = 0.01). Fine mapping of the region in this study and the EVE Asthma Consortium suggests an association between PSORS1C1 and asthma. We confirmed the strong allelic association between the 17q21 asthma in Latinos (IKZF3, lowest p-value: rs90792, OR: 0.67, 95% CI 0.61 – 0.75, p = 6 × 10−13) and replicated associations in several genes that had previously been associated with asthma in genome-wide association studies. Conclusions Admixture mapping and genome-wide association are complementary techniques that provide evidence for multiple asthma-associated loci in Latinos. Admixture mapping identifies a novel locus on 6p21 that replicates in a meta-analysis of several Latino populations, while genome-wide association confirms the previously identified locus on 17q21. PMID:24406073

Entrainment, transport and deposition of sediment by saline gravity currents

NASA Astrophysics Data System (ADS)

Zordan, Jessica; Juez, Carmelo; Schleiss, Anton J.; Franca, Mário J.

2018-05-01

Few studies have addressed simultaneously the feedback between the hydrodynamics of a gravity current and the geomorphological changes of a mobile bed. Hydrodynamic quantities such as turbulent and mean velocities, bed shear stress and turbulent stresses undoubtedly govern the processes of entrainment, transport and deposition. On the other hand, the incorporation of entrained sediment in the current may change its momentum by introducing extra internal stresses, introducing thus a feedback process. These two main questions are here investigated. Laboratory experiments of saline gravity currents, produced by lock-exchange, flowing over a mobile bed channel reach, are here reported. Different initial buoyancies of the current in the lock are tested together with three different grain sizes of the non-coherent sediment that form the erodible bed. Results from velocity measurements are combined with the visualization of the sediment movement in the mobile reach and with post-test topographic and photo surveys of the geomorphology modifications of the channel bed. Mean and turbulent velocities are measured and bed shear stress and Reynolds stresses are estimated. We show that the mean vertical component of the velocity and bed shear stress are highly correlated with the first instants of sediment entrainment. Vertical turbulent velocity is similarly related to entrainment, although with lower correlation values, contributing as well to the sediment movement. Bed shear stress and Reynolds shear stress measured near the bed are correlated with sediment entrainment for longer periods, indicating that these quantities are associated to distal transport as well. Geomorphological changes in the mobile bed are strongly related to the impulse caused by the bed shear stress on the sediment. On the other hand, we show that the nature of the grain of the mobile bed reach influences the hydrodynamics of the current which means that a feedback mechanisms between both occurs during

Time-dependent effects of dim light at night on re-entrainment and masking of hamster activity rhythms.

PubMed

Frank, David W; Evans, Jennifer A; Gorman, Michael R

2010-04-01

Bright light has been established as the most ubiquitous environmental cue that entrains circadian timing systems under natural conditions. Light equivalent in intensity to moonlight (<1 lux), however, also strongly modulates circadian function in a number of entrainment paradigms. For example, compared to completely dark nights, dim nighttime illumination accelerated re-entrainment of hamster activity rhythms to 4-hour phase advances and delays of an otherwise standard laboratory photocycle. The purpose of this study was to determine if a sensitive period existed in the night during which dim illumination had a robust influence on speed of re-entrainment. Male Siberian hamsters were either exposed to dim light throughout the night, for half of the night, or not at all. Compared to dark nights, dim illumination throughout the entire night decreased by 29% the time for the midpoint of the active phase to re-entrain to a 4-hour phase advance and by 26% for a 4-hour delay. Acceleration of advances and delays were also achieved with 5 hours of dim light per night, but effects depended on whether dim light was present in the first half, second half, or first and last quarters of the night. Both during phase shifting and steady-state entrainment, partially lit nights also produced strong positive and negative masking effects, as well as entrainment aftereffects in constant darkness. Thus, even in the presence of a strong zeitgeber, light that might be encountered under a natural nighttime sky potently modulates the circadian timing system of hamsters.

Turbulent entrainment in a strongly stratified barrier layer

NASA Astrophysics Data System (ADS)

Pham, H. T.; Sarkar, S.

2017-06-01

Large-eddy simulation (LES) is used to investigate how turbulence in the wind-driven ocean mixed layer erodes the stratification of barrier layers. The model consists of a stratified Ekman layer that is driven by a surface wind. Simulations at a wide range of N0/f are performed to quantify the effect of turbulence and stratification on the entrainment rate. Here, N0 is the buoyancy frequency in the barrier layer and f is the Coriolis parameter. The evolution of the mixed layer follows two stages: a rapid initial deepening and a late-time growth at a considerably slower rate. During the first stage, the mixed layer thickens to the depth that is proportional to u∗/fN0 where u∗ is the frictional velocity. During the second stage, the turbulence in the mixed layer continues to deepen further into the barrier layer, and the turbulent length scale is shown to scale with u∗/N0, independent of f. The late-time entrainment rate E follows the law of E=0.035Ri∗-1/2 where Ri∗ is the Richardson number. The exponent of -1/2 is identical but the coefficient of 0.035 is much smaller relative to the value of 2-3/2 for the nonrotating boundary layer. Simulations using the KPP model (version applicable to this simple case without additional effects of Langmuir turbulence or surface buoyancy flux) also yield the entrainment scaling of E∝Ri∗-1/2; however, the proportionality coefficient varies with the stratification. The structure of the Ekman current is examined to illustrate the strong effect of stratification in the limit of large N0/f.

A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle

PubMed Central

Hillis, David M.

2014-01-01

Genomic data facilitate opportunities to track complex population histories of divergence and gene flow. We developed a metric, scaled block size (SBS), which uses the nonrecombined block size of introgressed regions of chromosomes to differentiate between recent and ancient types of admixture, and applied it to the reconstruction of admixture in cattle. Cattle are descendants of 2 independently domesticated lineages, taurine and indicine, which diverged more than 200 000 years ago. Several breeds have hybrid ancestry between these divergent lineages. Using 47 506 single-nucleotide polymorphisms, we analyzed the genomic architecture of the ancestry of 1369 individuals. We focused on 4 groups with admixed ancestry, including 2 anciently admixed African breeds (n = 58; n = 43), New World cattle of Spanish origin (n = 51), and known recent hybrids (n = 46). We estimated the ancestry of chromosomal regions for each individual and used the SBS metric to differentiate the timing of admixture among groups and among individuals within groups. By comparing SBS values of test individuals with standards with known recent hybrid ancestry, we were able to differentiate individuals of recent hybrid origin from other admixed cattle. We also estimated ancestry at the chromosomal scale. The X chromosome exhibits reduced indicine ancestry in recent hybrid, New World, and western African cattle, with virtually no evidence of indicine ancestry in New World cattle. PMID:24510946

The roles of convective entrainment in spatial distributions and temporal variations of precipitation over tropical oceans

NASA Astrophysics Data System (ADS)

Hirota, N.; Takayabu, Y. N.; Watanabe, M.; Kimoto, M.; Chikira, M.

2013-12-01

This study shows that a proper treatment of convective entrainment is essential in determining spatial distributions and temporal variations of precipitation by numerical experiments. They have performed and compared four experiments with different entrainment characteristics: a control (Ctl), no entrainment (NoEnt), original Arakawa Schubert (AS), and AS with simple empirical suppression of convection (ASRH). The fractional entrainment rate of AS and ASRH are constant for each cloud type and are very small near cloud base compared to Ctl, in which half of buoyancy-generated energy is consumed by the entrainment. Ctl well reproduces the spatial and temporal variations, whereas NoEnt and AS, which are very similar to each other, significantly underestimated the variations with the so-called the double ITCZ problem. The enhanced variations in Ctl are due to the larger entrainment that strengthens the coupling of convection and free tropospheric humidity. Time variations are also more realistic in Ctl; mid-height convection moistens mid-troposphere and large precipitation events occur after sufficient moisture is available. In contrast, deep convection is more frequent but with smaller precipitation amount in NoEnt and AS. ASRH shows smaller spatial but excessive temporal variations suggesting that its empirical suppression condition is too simple and a more sophisticated formulation is required for more realistic precipitation variations. This study was supported by the Ministry of Education, Culture, Sports, Science and Technology (GRENE), and by the Ministry of the Environment (2A-1201), Japan.

Stratocumulus Precipitation and Entrainment Experiment (SPEE) Field Campaign Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Albrecht, Bruce; Ghate, Virendra; CADeddu, Maria

2016-06-01

The scientific focus of this project was to examine precipitation and entrainment processes in marine stratocumulus clouds. The entrainment studies focused on characterizing cloud turbulence at cloud top using Doppler cloud radar observations. The precipitation studies focused on characterizing the precipitation and the macroscopic properties (cloud thickness, and liquid water path) of the clouds. This project will contribute to the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Climate Research Facility’s overall objective of providing the remote-sensing observations needed to improve the representation of key cloud processes in climate models. It will be of direct relevance to the componentsmore » of ARM dealing with entrainment and precipitation processes in stratiform clouds. Further, the radar observing techniques that will be used in this study were developed using ARM Southern Great Plains (SGP) facility observations under Atmospheric System Research (ASR) support. The observing systems operating automatously from a site located just north of the Center for Interdisciplinary Remotely-Piloted Aircraft Studies (CIRPAS) aircraft hangar in Marina, California during the period of 1 May to 4 November 2015 included: 1. Microwave radiometer: ARM Microwave Radiometer, 3-Channel (MWR3C) with channels centered at 23.834, 30, and 89 GHz; supported by Dr. Maria Cadeddu. 2. Cloud Radar: CIRPAS 95 GHz Frequency Modulated Continuous Wave (FMCW) Cloud Radar (Centroid Frequency Chirp Rate [CFCR]); operations overseen by Drs. Ghate and Albrecht. 3. Ceilometer: Vaisala CK-14; operations overseen by Drs. Ghate and Albrecht.« less

Evaluation of Group Genetic Ancestry of Populations from Philadelphia and Dakar in the Context of Sex-Biased Admixture in the Americas

PubMed Central

Stefflova, Klara; Dulik, Matthew C.; Pai, Athma A.; Walker, Amy H.; Zeigler-Johnson, Charnita M.; Gueye, Serigne M.; Schurr, Theodore G.; Rebbeck, Timothy R.

2009-01-01

Background Population history can be reflected in group genetic ancestry, where genomic variation captured by the mitochondrial DNA (mtDNA) and non-recombining portion of the Y chromosome (NRY) can separate female- and male-specific admixture processes. Genetic ancestry may influence genetic association studies due to differences in individual admixture within recently admixed populations like African Americans. Principal Findings We evaluated the genetic ancestry of Senegalese as well as European Americans and African Americans from Philadelphia. Senegalese mtDNA consisted of ∼12% U haplotypes (U6 and U5b1b haplotypes, common in North Africa) while the NRY haplotypes belonged solely to haplogroup E. In Philadelphia, we observed varying degrees of admixture. While African Americans have 9–10% mtDNAs and ∼31% NRYs of European origin, these results are not mirrored in the mtDNA/NRY pools of European Americans: they have less than 7% mtDNAs and less than 2% NRYs from non-European sources. Additionally, there is <2% Native American contribution to Philadelphian African American ancestry and the admixture from combined mtDNA/NRY estimates is consistent with the admixture derived from autosomal genetic data. To further dissect these estimates, we have analyzed our samples in the context of different demographic groups in the Americas. Conclusions We found that sex-biased admixture in African-derived populations is present throughout the Americas, with continual influence of European males, while Native American females contribute mainly to populations of the Caribbean and South America. The high non-European female contribution to the pool of European-derived populations is consistently characteristic of Iberian colonization. These data suggest that genomic data correlate well with historical records of colonization in the Americas. PMID:19946364

Spontaneous Entrainment of Running Cadence to Music Tempo.

PubMed

Van Dyck, Edith; Moens, Bart; Buhmann, Jeska; Demey, Michiel; Coorevits, Esther; Dalla Bella, Simone; Leman, Marc

Since accumulating evidence suggests that step rate is strongly associated with running-related injuries, it is important for runners to exercise at an appropriate running cadence. As music tempo has been shown to be capable of impacting exercise performance of repetitive endurance activities, it might also serve as a means to (re)shape running cadence. The aim of this study was to validate the impact of music tempo on running cadence. Sixteen recreational runners ran four laps of 200 m (i.e. 800 m in total); this task was repeated 11 times with a short break in between each four-lap sequence. During the first lap of a sequence, participants ran at a self-paced tempo without musical accompaniment. Running cadence of the first lap was registered, and during the second lap, music with a tempo matching the assessed cadence was played. In the final two laps, the music tempo was either increased/decreased by 3.00, 2.50, 2.00, 1.50, or 1.00 % or was kept stable. This range was chosen since the aim of this study was to test spontaneous entrainment (an average person can distinguish tempo variations of about 4 %). Each participant performed all conditions. Imperceptible shifts in musical tempi in proportion to the runner's self-paced running tempo significantly influenced running cadence ( p  < .001). Contrasts revealed a linear relation between the tempo conditions and adaptation in running cadence ( p  < .001). In addition, a significant effect of condition on the level of entrainment was revealed ( p  < .05), which suggests that maximal effects of music tempo on running cadence can only be obtained up to a certain level of tempo modification. Finally, significantly higher levels of tempo entrainment were found for female participants compared to their male counterparts ( p  < .05). The applicable contribution of these novel findings is that music tempo could serve as an unprompted means to impact running cadence. As increases in step rate may prove

Dispersion of the intrinsic neuronal periods affects the relationship of the entrainment range to the coupling strength in the suprachiasmatic nucleus

NASA Astrophysics Data System (ADS)

Gu, Changgui; Yang, Huijie; Wang, Man

2017-11-01

Living beings on the Earth are subjected to and entrained (synchronized) to the natural 24-h light-dark cycle. Interestingly, they can also be entrained to an external artificial cycle of non-24-h periods. The range of these periods is called the entrainment range and it differs among species. In mammals, the entrainment range is regulated by a main clock located in the suprachiasmatic nucleus (SCN) which is composed of 10 000 neurons in the brain. Previous works have found that the entrainment range depends on the cellular coupling strength in the SCN. In particular, the entrainment range decreases with the increase of the cellular coupling strength, provided that all the neuronal oscillators are identical. However, the SCN neurons differ in the intrinsic periods that follow a normal distribution in a range from 22 to 28 h. In the present study, taking the dispersion of the intrinsic neuronal periods into account, we examined the relationship between the entrainment range and the coupling strength. Results from numerical simulations and theoretical analyses both show that the relationship is altered to be paraboliclike if the intrinsic neuronal periods are nonidentical, and the maximal entrainment range is obtained with a suitable coupling strength. Our results shed light on the role of the cellular coupling in the entrainment ability of the SCN network.

Isolation with differentiation followed by expansion with admixture in the tunicate Pyura chilensis

PubMed Central

2013-01-01

Background Pyura chilensis, a tunicate commercially exploited as food resource in Chile, is subject to management strategies, including restocking. The goal of this study was to examine the genetic structure of P. chilensis using information from a mitochondrial gene (Cytochrome Oxidase I, COI) and a nuclear gene (Elongation 1 alpha, EF1a), to characterize the geographic distribution of genetic diversity and differentiation, and to identify the main processes that have shaped it. We analyzed 268 and 208 sequences of COI and EF1a, respectively, from samples of eight local populations covering ca. 1800 km. Results For Pyura chilensis, partial sequences of the gene COI revealed three highly supported haplogroups that diverged 260000 to 470000 years ago. Two haplogroups currently are widely distributed and sympatric, while one is dominant only in Los Molinos (LM, 39°50′S). The two widespread COI haplogroups underwent a geographic expansion during an interglacial period of the Late Pleistocene ca. 100000 years ago. The nuclear gene was less divergent and did not resolve the COI haplogroups. Bayesian clustering of the nuclear gene’s SNPs revealed that individuals from the two widespread COI haplogroups were mostly assigned to two of the three detected clusters and had a marked degree of admixture. The third cluster predominated in LM and showed low admixture. Haplotypic diversity of both genes was very high, there was no isolation by distance, and most localities were genetically undifferentiated; only LM was consistently differentiated with both genes analyzed. Conclusions Pyura chilensis has less genetic structure than expected given its life history, which could be a consequence of dispersal on ship hulls. The only differentiated local population analyzed was LM. Coincidentally, it is the one furthest away from main maritime routes along the coast of Chile. The use of mitochondrial and nuclear markers allowed detection of divergent mitochondrial haplogroups in

Pollutant Removal, Dispersion and Entrainment over Two-Dimensional Idealized Street Canyons: an LES Approach

NASA Astrophysics Data System (ADS)

Wong, C.; Liu, C.

2010-12-01

Unlike pollutant transport over flat terrain, the mechanism and plume dispersion over urban areas is not well known. This study is therefore conceived to examine how urban morphology modifies the pollutant transport over urban areas. The computational domain and boundary condition used in this study is shown in Figure 1. The LES shows that inside the street canyon, the ground-level pollutants are carried to roof-level by the re-circulating flow, which are then removed from the street canyon to the UBL. Right above the roof level, narrow high-speed air masses in the streamwise flows and intensive downdrafts have been found in the shear layer. Different from the flows over a smooth surface, the maximum turbulence intensities descend that are peaked near the top of the building roughness. The pollutant is rather uniformly distributed inside a street canyon but disperses rapidly over the buildings exhibiting a Gaussian-plume form in the UBL. The mean component of vertical pollutant flux shows that the mean wind contributes to pollutant removal and entrainment simultaneously. Whereas, the fluctuating component demystifies that pollutant removal is mainly governed by atmospheric turbulence. Over the roof level, atmospheric flows slow down rapidly in the wake behind leeward building, suggesting the momentum entrainment into the street canyons. The decelerating streamwise flows in turn lead to upward flows carrying pollutants away from the street canyons, illustrating the basic pollutant removal mechanism in the skimming flow regime. Figure 1: Computational domain and boundary conditions Figure 2: Ensemble average vertical pollutant flux along the roof level. (a). Mean component; (b). turbulent component.

Seizure entrainment with polarizing low-frequency electric fields in a chronic animal epilepsy model

NASA Astrophysics Data System (ADS)

Sunderam, Sridhar; Chernyy, Nick; Peixoto, Nathalia; Mason, Jonathan P.; Weinstein, Steven L.; Schiff, Steven J.; Gluckman, Bruce J.

2009-08-01

Neural activity can be modulated by applying a polarizing low-frequency (Lt100 Hz) electric field (PLEF). Unlike conventional pulsed stimulation, PLEF stimulation has a graded, modulatory effect on neuronal excitability, and permits the simultaneous recording of neuronal activity during stimulation suitable for continuous feedback control. We tested a prototype system that allows for simultaneous PLEF stimulation with minimal recording artifact in a chronic tetanus toxin animal model (rat) of hippocampal epilepsy with spontaneous seizures. Depth electrode local field potentials recorded during seizures revealed a characteristic pattern of field postsynaptic potentials (fPSPs). Sinusoidal voltage-controlled PLEF stimulation (0.5-25 Hz) was applied in open-loop cycles radially across the CA3 of ventral hippocampus. For stimulated seizures, fPSPs were transiently entrained with the PLEF waveform. Statistical significance of entrainment was assessed with Thomson's harmonic F-test, with 45/132 stimulated seizures in four animals individually demonstrating significant entrainment (p < 0.04). Significant entrainment for multiple presentations at the same frequency (p < 0.01) was observed in three of four animals in 42/64 stimulated seizures. This is the first demonstration in chronically implanted freely behaving animals of PLEF modulation of neural activity with simultaneous recording.

Analysis of an entrainment model of the jet in a crossflow

NASA Technical Reports Server (NTRS)

Chang, H. S.; Werner, J. E.

1972-01-01

A theoretical model has been proposed for the problem of a round jet in an incompressible cross-flow. The method of matched asymptotic expansions has been applied to this problem. For the solution to the flow problem in the inner region, the re-entrant wake flow model was used with the re-entrant flow representing the fluid entrained by the jet. Higher order corrections are obtained in terms of this basic solution. The perturbation terms in the outer region was found to be a line distribution of doublets and sources. The line distribution of sources represents the combined effect of the entrainment and the displacement.

Near-field entrainment in black smoker plumes

NASA Astrophysics Data System (ADS)

Smith, J. E.; Germanovich, L. N.; Lowell, R. P.

2013-12-01

In this work, we study the entrainment rate of the ambient fluid into a plume in the extreme conditions of hydrothermal venting at ocean floor depths that would be difficult to reproduce in the laboratory. Specifically, we investigate the flow regime in the lower parts of three black smoker plumes in the Main Endeavour Field on the Juan de Fuca Ridge discharging at temperatures of 249°C, 333°C, and 336°C and a pressure of 21 MPa. Such flow conditions are typical for ocean floor hydrothermal venting but would be difficult to reproduce in the laboratory. The centerline temperature was measured at several heights in the plume above the orifice. Using a previously developed turbine flow meter, we also measured the mean flow velocity at the orifice. Measurements were conducted during dives 4452 and 4518 on the submersible Alvin. Using these measurements, we obtained a range of 0.064 - 0.068 for values of the entrainment coefficient α, which is assumed constant near the orifice. This is half the value of α ≈ 0.12 - 0.13 that would be expected for plume flow regimes based on the existing laboratory results and field measurements in lower temperature and pressure conditions. In fact, α = 0.064 - 0.068 is even smaller than the value of α ≈ 0.075 characteristic of jet flow regimes and appears to be the lowest reported in the literature. Assuming that the mean value α = 0.066 is typical for hydrothermal venting at ocean floor depths, we then characterized the flow regimes of 63 black smoker plumes located on the Endeavor Segment of the Juan de Fuca Ridge. Work with the obtained data is ongoing, but current results indicate that approximately half of these black smokers are lazy in the sense that their plumes exhibit momentum deficits compared to the pure plume flow that develops as the plume rises. The remaining half produces forced plumes that show the momentum excess compared to the pure plumes. The lower value of the entrainment coefficient has important

Bed particle entrainment and motion in turbulent open-channel flows: a high-resolution experimental study

NASA Astrophysics Data System (ADS)

Nikora, Vladimir; Cameron, Stuart; Amir, Mohammad; Stewart, Mark; Witz, Matthew

2015-04-01

In spite of significant efforts of geoscientists and engineers, the exact mechanics of sediment entrainment and transport by turbulent flows remains unclear and continues to be the focus of many research groups worldwide. The talk outlines current developments in this direction at the University of Aberdeen, where an extensive experimental programme has recently been completed. The experiments were conducted in the Aberdeen Open Channel Facility (AOCF, 20 m long, 1.18 m wide) over wide ranges of flow submergence (1.9-8.0), bulk Reynolds number (4400-83000), and channel aspect ratio (9-39). The flume bed was covered by hexagonally-packed glass beads 16 mm in diameter. For entrainment experiments, selected glass particles were replaced with lighter particles (nylon and delrin). Instantaneous velocity fields before, during, and after entrainment were measured with an advanced multi-mode Particle Image Velocimetry (PIV) system developed by S. Cameron. This system was also used for 3D particle tracking in the entrainment experiments. The main types of experiments included: (1) multi-mode turbulence measurements with fixed-bed conditions to assess the background flow structure (10 min to 120 min duration of velocity records); (2) simultaneous measurements of fluctuating differential pressure acting on 23 fixed particles with in-built pressure sensors, synchronously with PIV; (3) measurements of waiting times for particle entrainment, employing a specially designed system (SMC-1) for automatic placement of the particles on the bed and subsequent measurement of the time before entrainment; (4) long-term direct measurements of the instantaneous drag force acting on a single particle (attached to the bed) at different protrusions, synchronously with PIV; and (5) synchronous measurements of the flow field around a particle before, at, and during entrainment, supplemented with 3D particle tracking. The key results include: (1) the refined turbulence structure of a rough

Entrainment to periodic initiation and transition rates in a computational model for gene translation.

PubMed

Margaliot, Michael; Sontag, Eduardo D; Tuller, Tamir

2014-01-01

Periodic oscillations play an important role in many biomedical systems. Proper functioning of biological systems that respond to periodic signals requires the ability to synchronize with the periodic excitation. For example, the sleep/wake cycle is a manifestation of an internal timing system that synchronizes to the solar day. In the terminology of systems theory, the biological system must entrain or phase-lock to the periodic excitation. Entrainment is also important in synthetic biology. For example, connecting several artificial biological systems that entrain to a common clock may lead to a well-functioning modular system. The cell-cycle is a periodic program that regulates DNA synthesis and cell division. Recent biological studies suggest that cell-cycle related genes entrain to this periodic program at the gene translation level, leading to periodically-varying protein levels of these genes. The ribosome flow model (RFM) is a deterministic model obtained via a mean-field approximation of a stochastic model from statistical physics that has been used to model numerous processes including ribosome flow along the mRNA. Here we analyze the RFM under the assumption that the initiation and/or transition rates vary periodically with a common period T. We show that the ribosome distribution profile in the RFM entrains to this periodic excitation. In particular, the protein synthesis pattern converges to a unique periodic solution with period T. To the best of our knowledge, this is the first proof of entrainment in a mathematical model for translation that encapsulates aspects such as initiation and termination rates, ribosomal movement and interactions, and non-homogeneous elongation speeds along the mRNA. Our results support the conjecture that periodic oscillations in tRNA levels and other factors related to the translation process can induce periodic oscillations in protein levels, and may suggest a new approach for re-engineering genetic systems to obtain a

RE-ENTRAINMENT AND DISPERSION OF EXHAUSTS FROM INDOOR RADON REDUCTION SYSTEMS: ANALYSIS OF TRACER GAS DATA

EPA Science Inventory

Tracer gas studies were conducted around four model houses in a wind tunnel, and around one house in the field, to quantify re-entrainment and dispersion of exhaust gases released from residential indoor radon reduction systems. Re-entrainment tests in the field suggest that acti...

An experimental study of a plunging liquid jet induced air carryunder and dispersion

NASA Astrophysics Data System (ADS)

Bonetto, F.; Drew, D. A.; Lahey, R. T., Jr.

1993-03-01

A good understanding of the air carryunder and bubble dispersion process associated with a plunging liquid jet is vital if one is to be able to quantify such diverse phenomena as sea surface chemistry, the meteorological significance of breaking ocean waves (e.g., mitigation of the greenhouse effect due to the absorption of CO2 by the oceans), the performance of certain type of chemical reactors, and a number of other important maritime-related applications. The absorption of greenhouse gases into the ocean has been hypothesized to be highly dependent upon the air carryunder that occurs due to breaking waves. This process can be approximated with a plunging liquid jet. Moreover, the air entrainment process due to the breaking bow waves of surface ships may cause long (i.e., up to 5 km in length) wakes. Naturally, easily detectable wakes are undesirable for naval warships. In addition, the air carryunder that occurs at most hydraulic structures in rivers is primarily responsible for the large air/water mass transfer that is associated with these structures. Also, air entrainment plays an important role in the slug flow regime. In particular, the liquid film surrounding a Taylor bubble has a flow in the opposite direction from the Taylor bubble. This liquid film can be thought of as a plunging liquid jet that produces a surface depression in the rear part of the Taylor bubble.

Improving Parameterization of Entrainment Rate for Shallow Convection with Aircraft Measurements and Large-Eddy Simulation

DOE PAGES

Lu, Chunsong; Liu, Yangang; Zhang, Guang J.; ...

2016-02-01

This work examines the relationships of entrainment rate to vertical velocity, buoyancy, and turbulent dissipation rate by applying stepwise principal component regression to observational data from shallow cumulus clouds collected during the Routine AAF [Atmospheric Radiation Measurement (ARM) Aerial Facility] Clouds with Low Optical Water Depths (CLOWD) Optical Radiative Observations (RACORO) field campaign over the ARM Southern Great Plains (SGP) site near Lamont, Oklahoma. The cumulus clouds during the RACORO campaign simulated using a large eddy simulation (LES) model are also examined with the same approach. The analysis shows that a combination of multiple variables can better represent entrainment ratemore » in both the observations and LES than any single-variable fitting. Three commonly used parameterizations are also tested on the individual cloud scale. A new parameterization is therefore presented that relates entrainment rate to vertical velocity, buoyancy and dissipation rate; the effects of treating clouds as ensembles and humid shells surrounding cumulus clouds on the new parameterization are discussed. Physical mechanisms underlying the relationships of entrainment rate to vertical velocity, buoyancy and dissipation rate are also explored.« less

Laboratory Studies of Anomalous Entrainment in Cumulus Cloud Flows

NASA Astrophysics Data System (ADS)

Diwan, Sourabh S.; Narasimha, Roddam; Bhat, G. S.; Sreenivas, K. R.

2011-12-01

Entrainment in cumulus clouds has been a subject of investigation for the last sixty years, and continues to be a central issue in current research. The development of a laboratory facility that can simulate cumulus cloud evolution enables us to shed light on the problem. The apparatus for the purpose is based on a physical model of cloud flow as a plume with off-source diabatic heating that is dynamically similar to the effect of latent-heat release in natural clouds. We present a critical review of the experimental data so far obtained in such facilities on the variation of the entrainment coefficient in steady diabatic jets and plumes. Although there are some unexplained differences among different data sets, the dominant trend of the results compares favourably with recent numerical simulations on steady-state deep convection, and helps explain certain puzzles in the fluid dynamics of clouds.

The effects of non-self-sustained oscillators on the en-trainment ability of the suprachiasmatic nucleus

NASA Astrophysics Data System (ADS)

Gu, Changgui; Tang, Ming; Rohling, Jos H. T.; Yang, Huijie

2016-11-01

In mammals, the circadian rhythms of behavioral and physiological activities are regulated by an endogenous clock located in the suprachiasmatic nucleus (SCN). The SCN is composed of ~20,000 neurons, of which some are capable of self-sustained oscillations, while the others do not oscillate in a self-sustainable manner, but show arrhythmic patterns or damped oscillations. Thus far, the effects of these non-self-sustained oscillatory neurons are not fully explored. Here, we examined how the proportion of the non-self-sustained oscillators affects the free running period under constant darkness and the ability to entrain to the light-dark cycle. We find that the proportion does not affect the free running period, but plays a significant role in the range of entrainment. We also find that its effect on the entrainment range depends on the region where the non-self-sustained oscillators are located. If the non-self-sustained oscillatory neurons are situated in the light-sensitive subregion, the entrainment range narrows when the proportion increases. If they are situated in the light-insensitive subregion, however, the entrainment range broadens with the increase of the proportion. We suggest that the heterogeneity within the light-sensitive and light-insensitive subregions of the SCN has important consequences for how the clock works.

Overview of physical models of liquid entrainment in annular gas-liquid flow

NASA Astrophysics Data System (ADS)

Cherdantsev, Andrey V.

2018-03-01

A number of recent papers devoted to development of physically-based models for prediction of liquid entrainment in annular regime of two-phase flow are analyzed. In these models shearing-off the crests of disturbance waves by the gas drag force is supposed to be the physical mechanism of entrainment phenomenon. The models are based on a number of assumptions on wavy structure, including inception of disturbance waves due to Kelvin-Helmholtz instability, linear velocity profile inside liquid film and high degree of three-dimensionality of disturbance waves. Validity of the assumptions is analyzed by comparison to modern experimental observations. It was shown that nearly every assumption is in strong qualitative and quantitative disagreement with experiments, which leads to massive discrepancies between the modeled and real properties of the disturbance waves. As a result, such models over-predict the entrained fraction by several orders of magnitude. The discrepancy is usually reduced using various kinds of empirical corrections. This, combined with empiricism already included in the models, turns the models into another kind of empirical correlations rather than physically-based models.

Statistical and Detailed Analysis on Fiber Reinforced Self-Compacting Concrete Containing Admixtures- A State of Art of Review

NASA Astrophysics Data System (ADS)

Athiyamaan, V.; Mohan Ganesh, G.

2017-11-01

Self-Compacting Concrete is one of the special concretes that have ability to flow and consolidate on its own weight, completely fill the formwork even in the presence of dense reinforcement; whilst maintaining its homogeneity throughout the formwork without any requirement for vibration. Researchers all over the world are developing high performance concrete by adding various Fibers, admixtures in different proportions. Various different kinds Fibers like glass, steel, carbon, Poly propylene and aramid Fibers provide improvement in concrete properties like tensile strength, fatigue characteristic, durability, shrinkage, impact, erosion resistance and serviceability of concrete[6]. It includes fundamental study on fiber reinforced self-compacting concrete with admixtures; its rheological properties, mechanical properties and overview study on design methodology statistical approaches regarding optimizing the concrete performances. The study has been classified into seven basic chapters: introduction, phenomenal study on material properties review on self-compacting concrete, overview on fiber reinforced self-compacting concrete containing admixtures, review on design and analysis of experiment; a statistical approach, summary of existing works on FRSCC and statistical modeling, literature review and, conclusion. It is so eminent to know the resent studies that had been done on polymer based binder materials (fly ash, metakaolin, GGBS, etc.), fiber reinforced concrete and SCC; to do an effective research on fiber reinforced self-compacting concrete containing admixtures. The key aim of the study is to sort-out the research gap and to gain a complete knowledge on polymer based Self compacting fiber reinforced concrete.

Methane and hydrogen ignition with ethanol and butanol admixtures

NASA Astrophysics Data System (ADS)

Eremin, A. V.; Matveeva, N. A.; Mikheyeva, E. Yu

2018-01-01

This work is devoted to the investigation of combustion of simple and complex gaseous fuels: methane and hydrogen with admixtures of the most promising alcohols: ethanol and butanol. The process of ignition of investigated blends behind reflected shock waves in the temperature range of 1000-1600 K and pressure range of 4.5-6 bar was studied. The temperature dependences of ignition delay times for stoichiometric methane-oxygen-ethanol (or butanol) and hydrogen-oxygen-ethanol (or butanol) mixtures diluted in argon were obtained. The possible kinetic description is discussed.

Interethnic admixture and the evolution of Latin American populations

PubMed Central

Salzano, Francisco Mauro; Sans, Mónica

2014-01-01

A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues. PMID:24764751

An Investigation into the Mechanics of Windblown Dust Entrainment from Nickel Slag Surfaces Resembling Armoured Desert Pavements

NASA Astrophysics Data System (ADS)

Sanderson, Robert Steven

The purpose of this thesis is to investigate the dynamics of PM 10 emission from a nickel slag stockpile that closely resembles a desert pavement in physical characteristics. In the field, it was observed that slag surfaces develop by natural processes into a well-armoured surface over some period of time. The surface then consists of two distinct layers; a surficial armour layer containing only non-erodible gravel and cobble-sized clasts, and an underlying dust-laden layer, which contains a wide size range of slag particles, from clay-sized to cobble-sized. This surficial armour layer protects the underlying fines from wind entrainment, at least under typical wind conditions; however, particle emissions still do occur under high wind speeds. The dynamics of particle entrainment from within these surfaces are investigated herein. It is shown that the dynamics of the boundary layer flow over these lag surfaces are influenced by the inherent roughness and permeability of the surficial armour layer, such that the flow resembles those observed over and within vegetation canopies, and those associated with permeable gravel-bed river channels. Restriction of air flow within the permeable surface produces a high-pressure zone within the pore spaces, resulting in a Kelvin-Helmholtz shear instability, which triggers coherent motions in the form of repeating burst-sweep cycles. Using Laser Doppler Anemometry (LDA), it is demonstrated that the lower boundary layer is characterized by both Q4 sweeping motions and Q2 bursting motions, while the upper boundary layer is dominated by Q2 bursts. Pore air motions within the slag material were measured using buried pressure ports. It is shown that the mean pressure gradient which forms within the slag material results in net upward displacement of air, or wind pumping. However, this net upward motion is a result of rapid oscillatory motions which are directly driven by coherent boundary layer motions. It is also demonstrated that

Experimental Investigation of Droplet Evaporation of Water with Ground Admixtures while Motion in a Flame of Liquid Fuel

NASA Astrophysics Data System (ADS)

Dmitriyenko, Margarita A.; Nyashina, Galina S.; Zhdanova, Alena O.; Vysokomornaya, Olga V.

2016-02-01

The evaporation features for the atomized flow of suspension on the base of water with ground admixtures in an area of high-temperature combustion products of liquid flammable substance (acetone) were investigated experimentally by the optical methods of gas flow diagnostic and the high-speed video recording. The scales of influence of clay and silt concentration in droplets of atomized flow on the intensity of its evaporation were determined. The approximation dependences describing a decrease in typical size of suspension droplets at various values of ground admixtures were obtained.

Admixture Mapping of African-American Women in the AMBER Consortium Identifies New Loci for Breast Cancer and Estrogen-Receptor Subtypes.

PubMed

Ruiz-Narváez, Edward A; Sucheston-Campbell, Lara; Bensen, Jeannette T; Yao, Song; Haddad, Stephen; Haiman, Christopher A; Bandera, Elisa V; John, Esther M; Bernstein, Leslie; Hu, Jennifer J; Ziegler, Regina G; Deming, Sandra L; Olshan, Andrew F; Ambrosone, Christine B; Palmer, Julie R; Lunetta, Kathryn L

2016-01-01

Recent genetic admixture coupled with striking differences in incidence of estrogen receptor (ER) breast cancer subtypes, as well as severity, between women of African and European ancestry, provides an excellent rationale for performing admixture mapping in African American women with breast cancer risk. We performed the largest breast cancer admixture mapping study with in African American women to identify novel genomic regions associated with the disease. We conducted a genome-wide admixture scan using 2,624 autosomal ancestry informative markers (AIMs) in 3,629 breast cancer cases (including 1,968 ER-positive, 1093 ER-negative, and 601 triple-negative) and 4,658 controls from the African American Breast Cancer Epidemiology and Risk (AMBER) Consortium, a collaborative study of four large geographically different epidemiological studies of breast cancer in African American women. We used an independent case-control study to test for SNP association in regions with genome-wide significant admixture signals. We found two novel genome-wide significant regions of excess African ancestry, 4p16.1 and 17q25.1, associated with ER-positive breast cancer. Two regions known to harbor breast cancer variants, 10q26 and 11q13, were also identified with excess of African ancestry. Fine-mapping of the identified genome-wide significant regions suggests the presence of significant genetic associations with ER-positive breast cancer in 4p16.1 and 11q13. In summary, we identified three novel genomic regions associated with breast cancer risk by ER status, suggesting that additional previously unidentified variants may contribute to the racial differences in breast cancer risk in the African American population.

Activating and relaxing music entrains the speed of beat synchronized walking.

PubMed

Leman, Marc; Moelants, Dirk; Varewyck, Matthias; Styns, Frederik; van Noorden, Leon; Martens, Jean-Pierre

2013-01-01

Inspired by a theory of embodied music cognition, we investigate whether music can entrain the speed of beat synchronized walking. If human walking is in synchrony with the beat and all musical stimuli have the same duration and the same tempo, then differences in walking speed can only be the result of music-induced differences in stride length, thus reflecting the vigor or physical strength of the movement. Participants walked in an open field in synchrony with the beat of 52 different musical stimuli all having a tempo of 130 beats per minute and a meter of 4 beats. The walking speed was measured as the walked distance during a time interval of 30 seconds. The results reveal that some music is 'activating' in the sense that it increases the speed, and some music is 'relaxing' in the sense that it decreases the speed, compared to the spontaneous walked speed in response to metronome stimuli. Participants are consistent in their observation of qualitative differences between the relaxing and activating musical stimuli. Using regression analysis, it was possible to set up a predictive model using only four sonic features that explain 60% of the variance. The sonic features capture variation in loudness and pitch patterns at periods of three, four and six beats, suggesting that expressive patterns in music are responsible for the effect. The mechanism may be attributed to an attentional shift, a subliminal audio-motor entrainment mechanism, or an arousal effect, but further study is needed to figure this out. Overall, the study supports the hypothesis that recurrent patterns of fluctuation affecting the binary meter strength of the music may entrain the vigor of the movement. The study opens up new perspectives for understanding the relationship between entrainment and expressiveness, with the possibility to develop applications that can be used in domains such as sports and physical rehabilitation.

The effect of structured triglycerides on the kinetic stability of total nutrient admixtures.

PubMed

Balogh, Judit; Bubenik, Júlia; Dredán, Judit; Csempesz, Ferenc; Kiss, Dorottya; Zelkó, Romána

2005-10-05

The physical stability of two types of total parenteral nutrient (TPN) admixtures was studied as a function of storage time and temperature. One of them contained only structured triglycerides and the other exclusively long-chain triglycerides as lipid components. Droplet size of the mixtures was followed by photon correlation spectroscopy for 10 days. Zeta potential and dynamic surface tension measurements were carried out to evaluate the possible changes in the charge and interfacial surface tension of the emulsion droplets during the storage. pH values were monitored in order to follow the possible decomposition processes in the course of storage. Droplet size of emulsions prepared with lipids containing exclusively long-chain triglycerides showed remarkable increase after 4 days of storage in contrast with that of the mixtures containing structured lipids. The obtained results indicate that besides the advantageous metabolic effects of structured triglycerides, their application is recommended to improve the physical stability of TPN admixtures.

Transition from Selective Withdrawal to Light Layer Entrainment in an Oil-Water System

NASA Astrophysics Data System (ADS)

Hartenberger, Joel; O'Hern, Timothy; Webb, Stephen; James, Darryl

2010-11-01

Selective withdrawal refers to the selective removal of fluid of one density without entraining an adjacent fluid layer of a different density. Most prior literature has examined removal of the lower density fluid and the transition to entraining the higher density fluid. In the present experiments, a higher density liquid is removed through a tube that extends just below its interface with a lower density fluid. The critical depth for a given flow rate at which the liquid-liquid interface transitions to entrain the lighter fluid was measured. Experiments were performed for a range of different light layer silicone oils and heavy layer water or brine, covering a range of density and viscosity ratios. Applications include density-stratified reservoirs and brine removal from oil storage caverns. Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

Statistical analysis of kinetic energy entrainment in a model wind turbine array boundary layer

NASA Astrophysics Data System (ADS)

Cal, Raul Bayoan; Hamilton, Nicholas; Kang, Hyung-Suk; Meneveau, Charles

2012-11-01

For large wind farms, kinetic energy must be entrained from the flow above the wind turbines to replenish wakes and enable power extraction in the array. Various statistical features of turbulence causing vertical entrainment of mean-flow kinetic energy are studied using hot-wire velocimetry data taken in a model wind farm in a scaled wind tunnel experiment. Conditional statistics and spectral decompositions are employed to characterize the most relevant turbulent flow structures and determine their length-scales. Sweep and ejection events are shown to be the largest contributors to the vertical kinetic energy flux, although their relative contribution depends upon the location in the wake. Sweeps are shown to be dominant in the region above the wind turbine array. A spectral analysis of the data shows that large scales of the flow, about the size of the rotor diameter in length or larger, dominate the vertical entrainment. The flow is more incoherent below the array, causing decreased vertical fluxes there. The results show that improving the rate of vertical kinetic energy entrainment into wind turbine arrays is a standing challenge and would require modifying the large-scale structures of the flow. This work was funded in part by the National Science Foundation (CBET-0730922, CBET-1133800 and CBET-0953053).

Seizure entrainment with polarizing low frequency electric fields in a chronic animal epilepsy model

PubMed Central

Sunderam, Sridhar; Chernyy, Nick; Peixoto, Nathalia; Mason, Jonathan P.; Weinstein, Steven L.; Schiff, Steven J.; Gluckman, Bruce J.

2009-01-01

Neural activity can be modulated by applying a polarizing low frequency (≪ 100 Hz) electric field (PLEF). Unlike conventional pulsed stimulation, PLEF stimulation has a graded, modulatory effect on neuronal excitability, and permits the simultaneous recording of neuronal activity during stimulation suitable for continuous feedback control. We tested a prototype system that allows for simultaneous PLEF stimulation with minimal recording artifact in a chronic tetanus toxin animal model (rat) of hippocampal epilepsy with spontaneous seizures. Depth electrode local field potentials recorded during seizures revealed a characteristic pattern of field postsynaptic potentials (fPSPs). Sinusoidal voltage-controlled PLEF stimulation (0.5–25 Hz) was applied in open-loop cycles radially across the CA3 of ventral hippocampus. For stimulated seizures, fPSPs were transiently entrained with the PLEF waveform. Statistical significance of entrainment was assessed with Thomson’s harmonic F-test, with 45/132 stimulated seizures in 4 animals individually demonstrating significant entrainment (p < 0.04). Significant entrainment for multiple presentations at the same frequency (p < 0.01) was observed in 3 of 4 animals in 42/64 stimulated seizures. This is the first demonstration in chronically implanted freely behaving animals of PLEF modulation of neural activity with simultaneous recording. PMID:19602730

Optical Air Flow Measurements for Flight Tests and Flight Testing Optical Air Flow Meters

NASA Technical Reports Server (NTRS)

Jentink, Henk W.; Bogue, Rodney K.

2005-01-01

Optical air flow measurements can support the testing of aircraft and can be instrumental to in-flight investigations of the atmosphere or atmospheric phenomena. Furthermore, optical air flow meters potentially contribute as avionics systems to flight safety and as air data systems. The qualification of these instruments for the flight environment is where we encounter the systems in flight testing. An overview is presented of different optical air flow measurement techniques applied in flight and what can be achieved with the techniques for flight test purposes is reviewed. All in-flight optical airflow velocity measurements use light scattering. Light is scattered on both air molecules and aerosols entrained in the air. Basic principles of making optical measurements in flight, some basic optical concepts, electronic concepts, optoelectronic interfaces, and some atmospheric processes associated with natural aerosols are reviewed. Safety aspects in applying the technique are shortly addressed. The different applications of the technique are listed and some typical examples are presented. Recently NASA acquired new data on mountain rotors, mountain induced turbulence, with the ACLAIM system. Rotor position was identified using the lidar system and the potentially hazardous air flow profile was monitored by the ACLAIM system.

The Role of Oscillatory Phase in Determining the Temporal Organization of Perception: Evidence from Sensory Entrainment.

PubMed

Ronconi, Luca; Melcher, David

2017-11-01

Recent behavioral, neuroimaging, and neurophysiological studies have renewed the idea that the information processing within different temporal windows is linked to the phase and/or frequency of the ongoing oscillations, predominantly in the theta/alpha band (∼4-7 and 8-12 Hz, respectively). However, being correlational in nature, this evidence might reflect a nonfunctional byproduct rather than having a causal role. A more direct link can be shown with methods that manipulate oscillatory activity. Here, we used audiovisual entrainment at different frequencies in the prestimulus period of a temporal integration/segregation task. We hypothesized that entrainment would align ongoing oscillations and drive them toward the stimulation frequency. To reveal behavioral oscillations in temporal perception after the entrainment, we sampled the segregation/integration performance densely in time. In Experiment 1, two groups of human participants (both males and females) received stimulation either at the lower or the upper boundary of the alpha band (∼8.5 vs 11.5 Hz). For both entrainment frequencies, we found a phase alignment of the perceptual oscillation across subjects, but with two different power spectra that peaked near the entrainment frequency. These results were confirmed when perceptual oscillations were characterized in the time domain with sinusoidal fittings. In Experiment 2, we replicated the findings in a within-subject design, extending the results for frequencies in the theta (∼6.5 Hz), but not in the beta (∼15 Hz), range. Overall, these findings show that temporal segregation can be modified by sensory entrainment, providing evidence for a critical role of ongoing oscillations in the temporal organization of perception. SIGNIFICANCE STATEMENT The continuous flow of sensory input is not processed in an analog fashion, but rather is grouped by the perceptual system over time. Recent studies pinpointed the phase and/or frequency of the neural

Universal entrainment mechanism controls contact times with motile cells

NASA Astrophysics Data System (ADS)

Mathijssen, Arnold J. T. M.; Jeanneret, Raphaël; Polin, Marco

2018-03-01

Contact between particles and motile cells underpins a wide variety of biological processes, from nutrient capture and ligand binding to grazing, viral infection, and cell-cell communication. The window of opportunity for these interactions depends on the basic mechanism determining contact time, which is currently unknown. By combining experiments on three different species—Chlamydomonas reinhardtii, Tetraselmis subcordiforms, and Oxyrrhis marina—with simulations and analytical modeling, we show that the fundamental physical process regulating proximity to a swimming microorganism is hydrodynamic particle entrainment. The resulting distribution of contact times is derived within the framework of Taylor dispersion as a competition between advection by the cell surface and microparticle diffusion, and predicts the existence of an optimal tracer size that is also observed experimentally. Spatial organization of flagella, swimming speed, and swimmer and tracer size influence entrainment features and provide tradeoffs that may be tuned to optimize the estimated probabilities for microbial interactions like predation and infection.

Stability of admixtures of pethidine and metoclopramide in aqueous solution, 5% dextrose and 09% sodium chloride.

PubMed

Hor, M M; Chan, S Y; Yow, K L; Lim, L Y; Chan, E

1997-01-01

To study the stability of admixtures of pethidine and metoclopramide in aqueous solution, 0.9% sodium chloride and 5% dextrose preparations. Aqueous mixtures of 1 ml of 50 mg/ml pethidine with 2ml of 5 mg/ml metoclopramide were prepared in plastic syringes, while the 0.9% sodium chloride and 5% dextrose admixtures, each containing 7.35 mg/ml of pethidine and 0.15 mg/ml of metoclopramide, were prepared in infusion bags. The preparations were stored under light and dark conditions at 32 degrees C for 48 h. Samples were collected at 0, 0.5, 1, 2, 4, 6, 8, 24, 32 and 48 h. A high-performance liquid chromatographic method was developed to separate and quantify both drugs. All preparations were found to be physically and chemically stable for at least 48h, as concentration changes were within 10% of their initial level, with no development of haze, precipitate or colour. Light appeared to have a negligible effect. Although pH changes were observed, they were inconsistent and were within the ranges in which the drugs are expected to remain stable. Pethidine and metoclopramide admixtures can, therefore, on stability grounds be used for the concomitant management of pain, nausea and vomiting.

Performance Using Bamboo Fiber Ash Concrete as Admixture Adding Superplasticizer

NASA Astrophysics Data System (ADS)

Vasudevan, Gunalaan

2017-06-01

The increasing demand on natural resources for housing provisions in developing countries have called for sourcing and use of sustainable local materials for building and housing delivery. Natural materials to be considered sustainable for building construction should be ‘green’ and obtained from local sources, including rapidly renewable plant materials like palm fronds and bamboo, recycled materials and other products that are reusable and renewable. Each year, tens of millions of tons of bamboo are utilized commercially, generating a vast amount of waste. Besides that, bamboo fiber is easy availability, low density, low production cost and satisfactory mechanical properties. One solution is to activate this waste by using it as an additive admixture in concrete to keep it out of landfills and save money on waste disposal. The research investigates the mechanical and physical properties of bamboo fiber powder in a blended Portland cement. The structural value of the bamboo fiber powder in a blended Portland cement was evaluated with consideration for its suitability in concrete. Varied percentage of bamboo fiber powder (BFP) at 0%, 5%, 10%, 15%, and 20% as an admixture in 1:2:4 concrete mixes. The workability of the mix was determined through slump; standard consistency test was carried on the cement. Compressive strength of hardened cured (150 x 150 x 150) mm concrete cubes at 7days, 14days and 28days were tested.

Genome-wide detection of natural selection in African Americans pre- and post-admixture

PubMed Central

Jin, Wenfei; Xu, Shuhua; Wang, Haifeng; Yu, Yongguo; Shen, Yiping; Wu, Bailin; Jin, Li

2012-01-01

It is particularly meaningful to investigate natural selection in African Americans (AfA) due to the high mortality their African ancestry has experienced in history. In this study, we examined 491,526 autosomal single nucleotide polymorphisms (SNPs) genotyped in 5210 individuals and conducted a genome-wide search for selection signals in 1890 AfA. Several genomic regions showing an excess of African or European ancestry, which were considered the footprints of selection since population admixture, were detected based on a commonly used approach. However, we also developed a new strategy to detect natural selection both pre- and post-admixture by reconstructing an ancestral African population (AAF) from inferred African components of ancestry in AfA and comparing it with indigenous African populations (IAF). Interestingly, many selection-candidate genes identified by the new approach were associated with AfA-specific high-risk diseases such as prostate cancer and hypertension, suggesting an important role these disease-related genes might have played in adapting to a new environment. CD36 and HBB, whose mutations confer a degree of protection against malaria, were also located in the highly differentiated regions between AAF and IAF. Further analysis showed that the frequencies of alleles protecting against malaria in AAF were lower than those in IAF, which is consistent with the relaxed selection pressure of malaria in the New World. There is no overlap between the top candidate genes detected by the two approaches, indicating the different environmental pressures AfA experienced pre- and post-population admixture. We suggest that the new approach is reasonably powerful and can also be applied to other admixed populations such as Latinos and Uyghurs. PMID:22128132

Admixture analysis in relation to pedigree studies of introgression in a minority British cattle breed: the Lincoln Red.

PubMed

Bray, T C; Hall, S J G; Bruford, M W

2014-02-01

Investigation of historic population processes using molecular data has been facilitated by the use of approximate Bayesian computation (ABC), which enables the consideration of multiple alternative demographic scenarios. The Lincoln Red cattle breed provides a relatively simple example of two well-documented admixture events. Using molecular data for this breed, we found that structure did not resolve very low (<5% levels) of introgression, possibly due to sampling limitations. We evaluated the performance of two ABC approaches (2BAD and DIYABC) against those of two earlier methodologies, ADMIX and LEADMIX, by comparing their interpretations with the conclusions drawn from herdbook analysis. The ABC methods gave credible values for the proportions of the Lincoln Red genotype that are attributable to Aberdeen Angus and Limousin, although estimates of effective population size and event timing were not realistic. We suggest ABC methods are a valuable supplement to pedigree-based studies but that the accuracy of admixture determination is likely to diminish with increasing complexity of the admixture scenario. © 2013 Blackwell Verlag GmbH.

[Identification of Panax ginseng, P. notoginseng and P. quinquefolius admixture by multiplex allele-specific polymerase chain reaction].

PubMed

Jiang, Chao; Luo, Yu-Qing; Yuan, Yuan; Huang, Lu-Qi; Jin, Yan; Zhao, Yu-Yang

2017-04-01

To achieve a molecular method to identify Panax ginseng, P. notoginseng,P. quinquefolius and their admixture. The ITS,18S and matK sequences of Panax genus were analyzed to develop species-specific SNP marker. Three pairs of species-specific primers were designed to establish a multiplex allele-specific polymerase chain reaction (MAS-PCR) and the samples from different region were tested. The results showed that when the annealing temperature was 60 ℃ and the cycle number was 35, approximately 250, 500,1 000 bp specific band were obtained from P. ginseng, P. notoginseng and P. quinquefolius obtain, respectively. This method could also be used to authentificate admixture samples and could detect 0.5% percent of P. notoginseng or P. quinquefolius adulterated in P. ginseng, or 0.5% percent of P. ginseng or P. quinquefolius adulterated in P. notoginseng. The detect limit of P. ginseng in P. quinquefolius was 0.5% and P. notoginseng in P. quinquefolius was 1%. This results showed that the present method could be used as a promise method to identify Panax ginseng, P. notoginseng, P. quinquefolius and their admixture. Copyright© by the Chinese Pharmaceutical Association.

Obtaining Potential Virtual Temperature Profiles, Entrainment Fluxes, and Spectra from Mini Unmanned Aerial Vehicle Data

NASA Astrophysics Data System (ADS)

Dias, N. L.; Gonçalves, J. E.; Freire, L. S.; Hasegawa, T.; Malheiros, A. L.

2012-10-01

We present a simple but effective small unmanned aerial vehicle design that is able to make high-resolution temperature and humidity measurements of the atmospheric boundary layer. The air model used is an adapted commercial design, and is able to carry all the instrumentation (barometer, temperature and humidity sensor, and datalogger) required for such measurements. It is fitted with an autopilot that controls the plane's ascent and descent in a spiral to 1800 m above ground. We describe the results obtained on three different days when the plane, called Aerolemma-3, flew continuously throughout the day. Surface measurements of the sensible virtual heat flux made simultaneously allowed the calculation of all standard convective turbulence scales for the boundary layer, as well as a rigorous test of existing models for the entrainment flux at the top of the boundary layer, and for its growth. A novel approach to calculate the entrainment flux from the top-down, bottom-up model of Wynagaard and Brost is used. We also calculated temperature fluctuations by means of a spectral high-pass filter, and calculated their spectra. Although the time series are small, tapering proved ineffective in this case. The spectra from the untapered series displayed a consistent -5/3 behaviour, and from them it was possible to calculate a dimensionless dissipation function, which exhibited the expected similarity behaviour against boundary-layer bulk stability. The simplicity, ease of use and economy of such small aircraft make us optimistic about their usefulness in boundary-layer research.

Simple estimate of entrainment rate of pollutants from a coastal discharge into the surf zone.

PubMed

Wong, Simon H C; Monismith, Stephen G; Boehm, Alexandria B

2013-10-15

Microbial pollutants from coastal discharges can increase illness risks for swimmers and cause beach advisories. There is presently no predictive model for estimating the entrainment of pollution from coastal discharges into the surf zone. We present a novel, quantitative framework for estimating surf zone entrainment of pollution at a wave-dominant open beach. Using physical arguments, we identify a dimensionless parameter equal to the quotient of the surf zone width l(sz) and the cross-flow length scale of the discharge la = M(j) (1/2)/U(sz), where M(j) is the discharge's momentum flux and U(sz) is a representative alongshore velocity in the surf zone. We conducted numerical modeling of a nonbuoyant discharge at an alongshore uniform beach with constant slope using a wave-resolving hydrodynamic model. Using results from 144 numerical experiments we develop an empirical relationship between the surf zone entrainment rate α and l(sz)/(la). The empirical relationship can reasonably explain seven measurements of surf zone entrainment at three diverse coastal discharges. This predictive relationship can be a useful tool in coastal water quality management and can be used to develop predictive beach water quality models.

Can the circadian system of a diurnal and a nocturnal rodent entrain to ultraviolet light?

PubMed

Hut, R A; Scheper, A; Daan, S

2000-01-01

Spectral measurements of sunlight throughout the day show close correspondence between the timing of above ground activity of the European ground squirrel and the presence of ultraviolet light in the solar spectrum. However, in a standard entrainment experiment ground squirrels show no entrainment to ultraviolet light, while Syrian hamsters do entrain under the same protocol. Presented transmittance spectra for lenses, corneas, and vitreous bodies may explain the different results of the entrainment experiment. We found ultraviolet light transmittance in the colourless hamster lens (50% cut-off at 341 nm), but not in the yellow ground squirrel lens (50% cut-off around 493 nm). Ultraviolet sensitivity in the ground squirrels based upon possible fluorescence mechanisms was not evident. Possible functions of ultraviolet lens filters in diurnal mammals are discussed, and compared with nocturnal mammals and diurnal birds. Species of the latter two groups lack ultraviolet filtering properties of their lenses and their circadian system is known to respond to ultraviolet light, a feature that does not necessarily has to depend on ultraviolet photoreceptors. Although the circadian system of several species responds to ultraviolet light, we argue that the role of ultraviolet light as a natural Zeitgeber is probably limited.

Lexical Entrainment and Lexical Differentiation in Reference Phrase Choice

ERIC Educational Resources Information Center

Van Der Wege, Mija M.

2009-01-01

Speakers reuse prior references to objects when choosing reference phrases, a phenomenon known as lexical entrainment. One explanation is that speakers want to maintain a set of previously established referential precedents. Speakers may also contrast any new referents against this previously established set, thereby avoiding applying the same…

Neural Entrainment in Drum Rhythms with Silent Breaks: Evidence from Steady-state Evoked and Event-related Potentials.

PubMed

Stupacher, Jan; Witte, Matthias; Hove, Michael J; Wood, Guilherme

2016-12-01

The fusion of rhythm, beat perception, and movement is often summarized under the term "entrainment" and becomes obvious when we effortlessly tap our feet or snap our fingers to the pulse of music. Entrainment to music involves a large network of brain structures, and neural oscillations at beat-related frequencies can help elucidate how this network is connected. Here, we used EEG to investigate steady-state evoked potentials (SSEPs) and event-related potentials (ERPs) during listening and tapping to drum clips with different rhythmic structures that were interrupted by silent breaks of 2-6 sec. This design allowed us to address the question of whether neural entrainment processes persist after the physical presence of musical rhythms and to link neural oscillations and event-related neural responses. During stimulus presentation, SSEPs were elicited in both tasks (listening and tapping). During silent breaks, SSEPs were only present in the tapping task. Notably, the amplitude of the N1 ERP component was more negative after longer silent breaks, and both N1 and SSEP results indicate that neural entrainment was increased when listening to drum rhythms compared with an isochronous metronome. Taken together, this suggests that neural entrainment to music is not solely driven by the physical input but involves endogenous timing processes. Our findings break ground for a tighter linkage between steady-state and transient evoked neural responses in rhythm processing. Beyond music perception, they further support the crucial role of entrained oscillatory activity in shaping sensory, motor, and cognitive processes in general.

Light entrainment of the murine intraocular pressure circadian rhythm utilizes non-local mechanisms.

PubMed

Tsuchiya, Shunsuke; Buhr, Ethan D; Higashide, Tomomi; Sugiyama, Kazuhisa; Van Gelder, Russell N

2017-01-01

Intraocular pressure (IOP) is known to have a strong circadian rhythm, yet how light/dark cycles entrain this rhythm is unknown. The purpose of this study was to assess whether, like the retina, the mammalian ciliary body and IOP clocks have an intrinsic ability to entrain to light/dark cycles. Iris-ciliary body complexes were obtained from period2:luciferase (PER2::LUC) mice and cultured to measure bioluminescence rhythmicity. Pairs of the iris-ciliary body complex were exposed to antiphasic 9:15 h light/dark cycle in vitro. After 4 days of exposure to light/dark cycles, bioluminescence was recorded to establish their circadian phases. In addition, pairs of the iris-ciliary body complex co-cultured with the retinas or corneas of wild-type mice were also investigated. The IOP circadian changes of free-running Opn4-/-;rd1/rd1 mice whose behavior was antiphasic to wild-type were measured by a rebound tonometry, and compared with wild-type mice. Opn3, Opn4, and Opn5 mRNA expression in the iris-ciliary body were analyzed using RT-PCR. The iris/ciliary body complex expressed Opn3, Opn4, and Opn5 mRNA; however, unlike in retina and cornea, neither the iris-CB complex nor the co-cultured complex was directly entrained by light-dark cycle in vitro. The diurnal IOP change of Opn4-/-;rd1/rd1 mice showed an antiphasic pattern to wild-type mice and their rhythms followed the whole-animal behavioral rhythm. Despite expressing mRNA for several non-visual opsins, circadian rhythms of the iris-ciliary body complex of mice do not entrain directly to light-dark cycles ex vivo. Unlike retina, the iris/ciliary body clocks of blind mice remain synchronized to the organismal behavioral rhythm rather than local light-dark cycles. These results suggest that IOP rhythm entrainment is mediated by a systemic rather than local signal in mice.

Light entrainment of the murine intraocular pressure circadian rhythm utilizes non-local mechanisms

PubMed Central

Tsuchiya, Shunsuke; Buhr, Ethan D.; Higashide, Tomomi; Sugiyama, Kazuhisa

2017-01-01

Purpose Intraocular pressure (IOP) is known to have a strong circadian rhythm, yet how light/dark cycles entrain this rhythm is unknown. The purpose of this study was to assess whether, like the retina, the mammalian ciliary body and IOP clocks have an intrinsic ability to entrain to light/dark cycles. Methods Iris-ciliary body complexes were obtained from period2:luciferase (PER2::LUC) mice and cultured to measure bioluminescence rhythmicity. Pairs of the iris-ciliary body complex were exposed to antiphasic 9:15 h light/dark cycle in vitro. After 4 days of exposure to light/dark cycles, bioluminescence was recorded to establish their circadian phases. In addition, pairs of the iris-ciliary body complex co-cultured with the retinas or corneas of wild-type mice were also investigated. The IOP circadian changes of free-running Opn4-/-;rd1/rd1 mice whose behavior was antiphasic to wild-type were measured by a rebound tonometry, and compared with wild-type mice. Opn3, Opn4, and Opn5 mRNA expression in the iris-ciliary body were analyzed using RT-PCR. Results The iris/ciliary body complex expressed Opn3, Opn4, and Opn5 mRNA; however, unlike in retina and cornea, neither the iris-CB complex nor the co-cultured complex was directly entrained by light-dark cycle in vitro. The diurnal IOP change of Opn4-/-;rd1/rd1 mice showed an antiphasic pattern to wild-type mice and their rhythms followed the whole-animal behavioral rhythm. Conclusions Despite expressing mRNA for several non-visual opsins, circadian rhythms of the iris-ciliary body complex of mice do not entrain directly to light-dark cycles ex vivo. Unlike retina, the iris/ciliary body clocks of blind mice remain synchronized to the organismal behavioral rhythm rather than local light-dark cycles. These results suggest that IOP rhythm entrainment is mediated by a systemic rather than local signal in mice. PMID:28934261

Vitamin B12 affects non-photic entrainment of circadian locomotor activity rhythms in mice.

PubMed

Ebihara, S; Mano, N; Kurono, N; Komuro, G; Yoshimura, T

1996-07-15

Administration of vitamin B12 (VB12) has been reported to normalize human sleep-wake rhythm disorders such as non-24-h sleep-wake syndrome (HNS), delayed sleep phase syndrome (DSPS) or insomnia. However, the mechanisms of the action of VB12 on the rhythm disorders are unknown. In the present study, therefore, effects of VB12 on circadian rhythms of locomotor activity were examined in mice. In the first experiment, CBA/J mice were maintained under continuous light condition (LL) or blinded, and after free-running rhythms became stable, the mice were intraperitoneally injected with either VB12 or saline at a fixed time every day. In all the mice with tau > 24 h, saline injections resulted in entrainment of circadian rhythms, whereas not all the mice with tau < 24 h entrained to the injection. In contrast to saline injections, VB12 injections did not always induce entrainment and about half of the mice with tau > 24 h free-ran during the injection. In the second experiment, the amount of phase advances of circadian rhythms induced by a single injection of saline at circadian time (CT) 11 under LL was compared between the mice with and without VB12 silastic tubes. The results showed that the amplitude of phase advances was smaller in the mice with VB12 than those without VB12. In the third experiment, daily injections of saline were given to the mice with VB12 silastic tubes maintained under LL. In this chronic treatment of VB12 as well, attenuating effects of VB12 on saline-induced entrainment were observed. These results suggest that VB12 affects the mechanisms implicated in non-photic entrainment of circadian rhythms in mice.

Drinking with a hairy tongue: viscous entrainment by dipping hairy surfaces

NASA Astrophysics Data System (ADS)

Nasto, Alice; Brun, Pierre-Thomas; Alvarado, José; Bush, John; Hosoi, Anette

2016-11-01

Nectar-drinking bats have tongues covered with hair-like papillae, enhancing their ability to take up viscous nectar by dipping. Using a combination of model experiments and theory reminiscent of Landau-Levich-Derjaguin dip coating, we rationalize this mechanism of viscous entrainment in a hairy texture. For the model experiments, hairy surfaces are fabricated using laser cut molds and casting samples with PDMS elastomer. Modeling the liquid trapped within the texture using a Darcy-Brinkman like approach, we derive the drainage flow solution. The amount of fluid that is entrained is dependent on the viscosity of the fluid, the density of the hairs, and the dipping speed. We find that there is an optimal hair density to maximize fluid uptake.

Numerically modeling oxide entrainment in the filling of castings: The effect of the webber number

NASA Astrophysics Data System (ADS)

Cuesta, Rafael; Delgado, Angel; Maroto, Antonio; Mozo, David

2006-11-01

In the casting of aluminum alloys and, in general, in the casting of film-forming alloys, the entrainment of oxides into the bulk liquid severely reduces the strength of the cast part. To avoid this, the melt velocity must be kept below a certain value, namely critical velocity, which is widely assumed to be 0.5 m/s. In this paper the authors investigate, by means of fluid-dynamic computer simulation, the dependence of critical veiocity on geometrical features of the running channels and thermophysical properties of the molten metal. For each of the geometries studied, once the critical velocity is exceeded, the amount of oxide entrained in the liquid is quantified. The analysis of the results reveals that surface entrainment is much more related to the non-dimensional Webber number than to melt velocity.

Entrainment in the master equation.

PubMed

Margaliot, Michael; Grüne, Lars; Kriecherbauer, Thomas

2018-04-01

The master equation plays an important role in many scientific fields including physics, chemistry, systems biology, physical finance and sociodynamics. We consider the master equation with periodic transition rates. This may represent an external periodic excitation like the 24 h solar day in biological systems or periodic traffic lights in a model of vehicular traffic. Using tools from systems and control theory, we prove that under mild technical conditions every solution of the master equation converges to a periodic solution with the same period as the rates. In other words, the master equation entrains (or phase locks) to periodic excitations. We describe two applications of our theoretical results to important models from statistical mechanics and epidemiology.

Entrainment in the master equation

PubMed Central

Grüne, Lars; Kriecherbauer, Thomas

2018-01-01

The master equation plays an important role in many scientific fields including physics, chemistry, systems biology, physical finance and sociodynamics. We consider the master equation with periodic transition rates. This may represent an external periodic excitation like the 24 h solar day in biological systems or periodic traffic lights in a model of vehicular traffic. Using tools from systems and control theory, we prove that under mild technical conditions every solution of the master equation converges to a periodic solution with the same period as the rates. In other words, the master equation entrains (or phase locks) to periodic excitations. We describe two applications of our theoretical results to important models from statistical mechanics and epidemiology. PMID:29765669

Enhanced entrainability of genetic oscillators by period mismatch

PubMed Central

Hasegawa, Yoshihiko; Arita, Masanori

2013-01-01

Biological oscillators coordinate individual cellular components so that they function coherently and collectively. They are typically composed of multiple feedback loops, and period mismatch is unavoidable in biological implementations. We investigated the advantageous effect of this period mismatch in terms of a synchronization response to external stimuli. Specifically, we considered two fundamental models of genetic circuits: smooth and relaxation oscillators. Using phase reduction and Floquet multipliers, we numerically analysed their entrainability under different coupling strengths and period ratios. We found that a period mismatch induces better entrainment in both types of oscillator; the enhancement occurs in the vicinity of the bifurcation on their limit cycles. In the smooth oscillator, the optimal period ratio for the enhancement coincides with the experimentally observed ratio, which suggests biological exploitation of the period mismatch. Although the origin of multiple feedback loops is often explained as a passive mechanism to ensure robustness against perturbation, we study the active benefits of the period mismatch, which include increasing the efficiency of the genetic oscillators. Our findings show a qualitatively different perspective for both the inherent advantages of multiple loops and their essentiality. PMID:23389900

Nasal Respiration Entrains Human Limbic Oscillations and Modulates Cognitive Function

PubMed Central

Jiang, Heidi; Zhou, Guangyu; Arora, Nikita; Schuele, Stephan; Rosenow, Joshua; Gottfried, Jay A.

2016-01-01

The need to breathe links the mammalian olfactory system inextricably to the respiratory rhythms that draw air through the nose. In rodents and other small animals, slow oscillations of local field potential activity are driven at the rate of breathing (∼2–12 Hz) in olfactory bulb and cortex, and faster oscillatory bursts are coupled to specific phases of the respiratory cycle. These dynamic rhythms are thought to regulate cortical excitability and coordinate network interactions, helping to shape olfactory coding, memory, and behavior. However, while respiratory oscillations are a ubiquitous hallmark of olfactory system function in animals, direct evidence for such patterns is lacking in humans. In this study, we acquired intracranial EEG data from rare patients (Ps) with medically refractory epilepsy, enabling us to test the hypothesis that cortical oscillatory activity would be entrained to the human respiratory cycle, albeit at the much slower rhythm of ∼0.16–0.33 Hz. Our results reveal that natural breathing synchronizes electrical activity in human piriform (olfactory) cortex, as well as in limbic-related brain areas, including amygdala and hippocampus. Notably, oscillatory power peaked during inspiration and dissipated when breathing was diverted from nose to mouth. Parallel behavioral experiments showed that breathing phase enhances fear discrimination and memory retrieval. Our findings provide a unique framework for understanding the pivotal role of nasal breathing in coordinating neuronal oscillations to support stimulus processing and behavior. SIGNIFICANCE STATEMENT Animal studies have long shown that olfactory oscillatory activity emerges in line with the natural rhythm of breathing, even in the absence of an odor stimulus. Whether the breathing cycle induces cortical oscillations in the human brain is poorly understood. In this study, we collected intracranial EEG data from rare patients with medically intractable epilepsy, and found evidence

Nasal Respiration Entrains Human Limbic Oscillations and Modulates Cognitive Function.

PubMed

Zelano, Christina; Jiang, Heidi; Zhou, Guangyu; Arora, Nikita; Schuele, Stephan; Rosenow, Joshua; Gottfried, Jay A

2016-12-07

The need to breathe links the mammalian olfactory system inextricably to the respiratory rhythms that draw air through the nose. In rodents and other small animals, slow oscillations of local field potential activity are driven at the rate of breathing (∼2-12 Hz) in olfactory bulb and cortex, and faster oscillatory bursts are coupled to specific phases of the respiratory cycle. These dynamic rhythms are thought to regulate cortical excitability and coordinate network interactions, helping to shape olfactory coding, memory, and behavior. However, while respiratory oscillations are a ubiquitous hallmark of olfactory system function in animals, direct evidence for such patterns is lacking in humans. In this study, we acquired intracranial EEG data from rare patients (Ps) with medically refractory epilepsy, enabling us to test the hypothesis that cortical oscillatory activity would be entrained to the human respiratory cycle, albeit at the much slower rhythm of ∼0.16-0.33 Hz. Our results reveal that natural breathing synchronizes electrical activity in human piriform (olfactory) cortex, as well as in limbic-related brain areas, including amygdala and hippocampus. Notably, oscillatory power peaked during inspiration and dissipated when breathing was diverted from nose to mouth. Parallel behavioral experiments showed that breathing phase enhances fear discrimination and memory retrieval. Our findings provide a unique framework for understanding the pivotal role of nasal breathing in coordinating neuronal oscillations to support stimulus processing and behavior. Animal studies have long shown that olfactory oscillatory activity emerges in line with the natural rhythm of breathing, even in the absence of an odor stimulus. Whether the breathing cycle induces cortical oscillations in the human brain is poorly understood. In this study, we collected intracranial EEG data from rare patients with medically intractable epilepsy, and found evidence for respiratory entrainment

Hydrodynamic entrainment in micro-confined suspensions and its implications for two-point microrheology

NASA Astrophysics Data System (ADS)

Aponte-Rivera, Christian; Zia, Roseanna N.

2017-11-01

We study hydrodynamic entrainment in spherically confined colloidal suspensions of hydrodynamically interacting particles as a model system for intracellular and other micro-confined biophysical transport. Modeling of transport and rheology in such materials requires an accurate description of the microscopic forces driving particle motion and of particle interactions with nearby boundaries. We carry out dynamic simulations of concentrated, spherically confined colloids as a model system to study the effect of 3D confinement on entrainment and rheology. We show that entrainment between two tracer particles exhibits qualitatively different functional dependence on inter-particle separation as compared to an unbound suspension, and develop a scaling theory that collapses the concentrated mobility of spherically confined suspensions for all volume fractions and particle to cavity size ratios onto a master curve. For widely separated particles, the master curve can be predicted via a Green's function, which suggests a framework with which to conduct two-point microrheology measurements near confining boundaries. The implications of these results for experiments in micro-confined biophysical systems, such as the interior of eukaryotic cells, are discussed.

Ad hoc versus standardized admixtures for continuous infusion drugs in neonatal intensive care: cognitive task analysis of safety at the bedside.

PubMed

Brannon, Timothy S

2006-01-01

Continuous infusion intravenous (IV) drugs in neonatal intensive care are usually prepared based on patient weight so that the dose is readable as a simple multiple of the infusion pump rate. New safety guidelines propose that hospitals switch to using standardized admixtures of these drugs to prevent calculation errors during ad hoc preparation. Extended hierarchical task analysis suggests that switching to standardized admixtures may lead to more errors in programming the pump at the bedside.

Cuba: Exploring the History of Admixture and the Genetic Basis of Pigmentation Using Autosomal and Uniparental Markers

PubMed Central

Fuentes-Smith, Evelyn; Salas, Antonio; Buttenschøn, Henriette N.; Demontis, Ditte; Torres-Español, María; Marín-Padrón, Lilia C.; Gómez-Cabezas, Enrique J.; Álvarez-Iglesias, Vanesa; Mosquera-Miguel, Ana; Martínez-Fuentes, Antonio; Carracedo, Ángel; Børglum, Anders D.; Mors, Ole

2014-01-01

We carried out an admixture analysis of a sample comprising 1,019 individuals from all the provinces of Cuba. We used a panel of 128 autosomal Ancestry Informative Markers (AIMs) to estimate the admixture proportions. We also characterized a number of haplogroup diagnostic markers in the mtDNA and Y-chromosome in order to evaluate admixture using uniparental markers. Finally, we analyzed the association of 16 single nucleotide polymorphisms (SNPs) with quantitative estimates of skin pigmentation. In the total sample, the average European, African and Native American contributions as estimated from autosomal AIMs were 72%, 20% and 8%, respectively. The Eastern provinces of Cuba showed relatively higher African and Native American contributions than the Western provinces. In particular, the highest proportion of African ancestry was observed in the provinces of Guantánamo (40%) and Santiago de Cuba (39%), and the highest proportion of Native American ancestry in Granma (15%), Holguín (12%) and Las Tunas (12%). We found evidence of substantial population stratification in the current Cuban population, emphasizing the need to control for the effects of population stratification in association studies including individuals from Cuba. The results of the analyses of uniparental markers were concordant with those observed in the autosomes. These geographic patterns in admixture proportions are fully consistent with historical and archaeological information. Additionally, we identified a sex-biased pattern in the process of gene flow, with a substantially higher European contribution from the paternal side, and higher Native American and African contributions from the maternal side. This sex-biased contribution was particularly evident for Native American ancestry. Finally, we observed that SNPs located in the genes SLC24A5 and SLC45A2 are strongly associated with melanin levels in the sample. PMID:25058410

Cuba: exploring the history of admixture and the genetic basis of pigmentation using autosomal and uniparental markers.

PubMed

Marcheco-Teruel, Beatriz; Parra, Esteban J; Fuentes-Smith, Evelyn; Salas, Antonio; Buttenschøn, Henriette N; Demontis, Ditte; Torres-Español, María; Marín-Padrón, Lilia C; Gómez-Cabezas, Enrique J; Alvarez-Iglesias, Vanesa; Mosquera-Miguel, Ana; Martínez-Fuentes, Antonio; Carracedo, Angel; Børglum, Anders D; Mors, Ole

2014-07-01

We carried out an admixture analysis of a sample comprising 1,019 individuals from all the provinces of Cuba. We used a panel of 128 autosomal Ancestry Informative Markers (AIMs) to estimate the admixture proportions. We also characterized a number of haplogroup diagnostic markers in the mtDNA and Y-chromosome in order to evaluate admixture using uniparental markers. Finally, we analyzed the association of 16 single nucleotide polymorphisms (SNPs) with quantitative estimates of skin pigmentation. In the total sample, the average European, African and Native American contributions as estimated from autosomal AIMs were 72%, 20% and 8%, respectively. The Eastern provinces of Cuba showed relatively higher African and Native American contributions than the Western provinces. In particular, the highest proportion of African ancestry was observed in the provinces of Guantánamo (40%) and Santiago de Cuba (39%), and the highest proportion of Native American ancestry in Granma (15%), Holguín (12%) and Las Tunas (12%). We found evidence of substantial population stratification in the current Cuban population, emphasizing the need to control for the effects of population stratification in association studies including individuals from Cuba. The results of the analyses of uniparental markers were concordant with those observed in the autosomes. These geographic patterns in admixture proportions are fully consistent with historical and archaeological information. Additionally, we identified a sex-biased pattern in the process of gene flow, with a substantially higher European contribution from the paternal side, and higher Native American and African contributions from the maternal side. This sex-biased contribution was particularly evident for Native American ancestry. Finally, we observed that SNPs located in the genes SLC24A5 and SLC45A2 are strongly associated with melanin levels in the sample.