Science.gov

Sample records for alaska shallow-water species

  1. 75 FR 56017 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-15

    ... under Sec. 679.21(d)(7)(i) on September 3, 2010 (75 FR 54290, September 7, 2010). NMFS has determined... Economic Zone Off Alaska; Shallow- Water Species by Vessels Using Trawl Gear in the Gulf of Alaska AGENCY...-water species by vessels using trawl gear in the Gulf of Alaska (GOA). This action is necessary to...

  2. 76 FR 57679 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-16

    ... FR 55726, September 7, 2011). As of September 12, 2011, NMFS has determined that approximately 149... comprise the shallow-water species fishery are pollock, Pacific cod, shallow-water flatfish, flathead...

  3. 75 FR 38938 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Catcher...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-07

    ... for groundfish of the GOA (75 FR 11749, March 12, 2010), and as posted as the Catcher/Processor... species fishery for the sideboard limit are shallow-water flatfish and flathead sole. After the...

  4. 75 FR 54290 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-07

    ... of the GOA (75 FR 11749, March 12, 2010), for the period 1200 hrs, A.l.t., September 1, 2010, through... pollock, Pacific cod, shallow-water flatfish, flathead sole, Atka mackerel, skates, and ``other...

  5. 77 FR 12213 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species by Amendment 80...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-29

    ... tons as established by the final 2011 and 2012 harvest specifications for groundfish of the GOA (76 FR... are pollock, Pacific cod, shallow-water flatfish, flathead sole, Atka mackerel, skates, and...

  6. 76 FR 55276 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-07

    ... of the GOA (76 FR 11111, March 11, 2011), for the period 1200 hrs, A.l.t., September 1, 2011, through... pollock, Pacific cod, shallow-water flatfish, flathead sole, Atka mackerel, skates, and ``other...

  7. Shallow-water habitat use by Bering Sea flatfishes along the central Alaska Peninsula

    NASA Astrophysics Data System (ADS)

    Hurst, Thomas P.

    2016-05-01

    Flatfishes support a number of important fisheries in Alaskan waters and represent major pathways of energy flow through the ecosystem. Despite their economic and ecological importance, little is known about the use of habitat by juvenile flatfishes in the eastern Bering Sea. This study describes the habitat characteristics of juvenile flatfishes in coastal waters along the Alaska Peninsula and within the Port Moller-Herendeen Bay system, the largest marine embayment in the southern Bering Sea. The two most abundant species, northern rock sole and yellowfin sole, differed slightly in habitat use with the latter occupying slightly muddier substrates. Both were more common along the open coastline than they were within the bay, whereas juvenile Alaska plaice were more abundant within the bay than along the coast and used shallow waters with muddy, high organic content sediments. Juvenile Pacific halibut showed the greatest shift in distribution between age classes: age-0 fish were found in deeper waters (~ 30 m) along the coast, whereas older juveniles were found in the warmer, shallow waters within the bay, possibly due to increased thermal opportunities for growth in this temperature-sensitive species. Three other species, starry flounder, flathead sole, and arrowtooth flounder, were also present, but at much lower densities. In addition, the habitat use patterns of spring-spawning flatfishes (northern rock sole, Pacific halibut, and Alaska plaice) in this region appear to be strongly influenced by oceanographic processes that influence delivery of larvae to coastal habitats. Overall, use of the coastal embayment habitats appears to be less important to juvenile flatfishes in the Bering Sea than in the Gulf of Alaska.

  8. Cheilopallene ogasawarensis, a New Species of Shallow-Water Pycnogonid (Arthropoda: Pycnogonida) from the Ogasawara (Bonin) Islands, Japan, Northwest Pacific.

    PubMed

    Nakamura, Koichiro; Akiyama, Tadashi

    2015-01-01

    A new species of pycnogonid recorded from the shallow waters of Ogasawara (Bonin) Island, Japan, Cheilopallene ogasawarensis n. sp. is described, illustrated and compared with similar species. Cheilopallene ogasawarensis is only the third pycnogonid species recorded from these islands. Morphological characters clearly distinguish the new species from its geographically closest congener C. nodulosa Hong and Kim, 1987, also recorded from Japanese waters. PMID:26250303

  9. Studies of ambient noise in shallow water environments off Mexico and Alaska: characteristics, metrics and time-synchronization applications

    NASA Astrophysics Data System (ADS)

    Guerra, Melania

    Sound in the ocean originates from multiple mechanisms, both natural and anthropogenic. Collectively, underwater ambient noise accumulates valuable information about both its sources and the oceanic environment that propagates this noise. Characterizing the features of ambient noise source mechanisms is challenging, but essential, for properly describing an acoustic environment. Disturbances to a local acoustic environment may affect many aquatic species that have adapted to be heavily dependent on this particular sense for survival functions. In the case of marine mammals, which are federally protected, demand exists for understanding such potential impacts, which drives important scientific efforts that utilize passive acoustic monitoring (PAM) tools to inform regulatory decisions. This dissertation presents two independent studies that use PAM data to investigate the characteristics of source mechanisms that dominate ambient noise in two diverse shallow water environments. The study in Chapter 2 directly addresses the concern of how anthropogenic activities can degrade the effectiveness of PAM. In the Alaskan Beaufort Sea, an environment where ambient noise is normally dominated by natural causes, seismic surveys create impulsive sounds to map the composition of the bottom. By inspecting single-sensor PAM data, the spectral characteristics of seismic survey airgun reverberation are measured, and their contribution to the overall ambient noise is quantified. This work is relevant to multiple ongoing mitigation protocols that rely on PAM to acoustically detect marine mammal presence during industrial operations. Meanwhile, Chapter 3 demonstrates that by analyzing data from multiple PAM sensors, features embedded in both directional and omnidirectional ambient noise can be used to develop new time-synchronization processing techniques for aligning autonomous elements of an acoustic array, a tool commonly used in PAM for detecting and tracking marine mammals. Using

  10. Range extension and morphological characterization of rhodolith-forming species (Corallinales, Rhodophyta) from shallow water in the Mexican South Pacific

    NASA Astrophysics Data System (ADS)

    Peralta-García, Edith Concepción; Rosas-Alquicira, Edgar Francisco

    2014-12-01

    Living rhodolith beds are widely distributed along the Eastern Pacific ocean. Despite their widespread distribution, little is known about the rhodolith-forming species from shallow water in the Mexican South Pacific. Many taxonomic and morphological studies about rhodoliths have been carried out in the Gulf of California, where the forming species belong to the Hapalidiaceae and Corallinaceae families. This paper is the first report on the occurrence of the rhodolith-forming Hapalidiaceae species Lithothamnion muelleri and Phymatolithon repandum at three sites in the Mexican South Pacific. The branch density, maximum length and sphericity were measured for each determined species. Rhodoliths were distributed between 4 and 6 m depth, but differences in the branch density between species and sites were not found. Finally, the present record of L. muelleri fills the gap in the species distribution along the Eastern Pacific ocean, while the record of P. repandum is the first of the species in the region.

  11. Taxonomic review of tropical western Atlantic shallow water Drilliidae (Mollusca: Gastropoda: Conoidea) including descriptions of 100 new species.

    PubMed

    Fallon, Phillip J Jr

    2016-01-01

    A review of the literature and examination of over 3,200 specimens of shallow water (<200 m) tropical western Atlantic (TWA) Drilliidae Olson, 1964 in museum and private collections has resulted in the recognition of numerous previously undescribed species, 100 of which are proposed here for the first time. A total of 65 names were found in the literature. Of these, 48 are considered valid, 16 synonyms, and one nomen dubium. In addition, characteristics that distinguish each genus currently in use for TWA shallow water species have indicated the need for reassignment (new combinations within Drilliidae) of 15 species. Some nomenclatural actions have come about from the literature review and include one taxon placed in junior synonymy (under an older name recently re-discovered) and one new name for a junior homonym. Two neotypes, five lectotype designations, and one new name are also proposed. Altogether, nomenclatural actions on 17% of valid previously described taxa are proposed. The 100 proposed names are placed in 12 available and one new genus: Agladrillia Woodring, 1928 (2), Bellaspira Conrad, 1868 (7), Calliclava McLean, 1971 (3), Cerodrillia Bartsch & Rehder, 1939 (11), Clathrodrillia Dall, 1918 (6), Decoradrillia, new genus (4), Douglassia Bartsch, 1934 (4), Fenimorea Bartsch, 1934 (15), Leptadrillia Woodring, 1928 (12), Lissodrillia Bartsch & Rehder, 1939 (8), Neodrillia Bartsch, 1943 (2), Splendrillia Hedley, 1922 (13), and Syntomodrillia Woodring, 1928 (13). These are the first reports of Calliclava in the western Atlantic, previously known only from the eastern Pacific. The new genus, Decoradrillia, is proposed to hold four new species and one existing that share a unique shell microsculpture and other morphological traits. One genus, Drillia Gray, 1838, is not currently believed to have TWA representatives. Three genera comprised exclusively of bathyal species are not treated in this work: Clavus Monfort, 1810 (=Eldridgea Bartsch, 1934), Globidrillia

  12. Taxonomic review of tropical western Atlantic shallow water Drilliidae (Mollusca: Gastropoda: Conoidea) including descriptions of 100 new species.

    PubMed

    Fallon, Phillip J Jr

    2016-01-01

    A review of the literature and examination of over 3,200 specimens of shallow water (<200 m) tropical western Atlantic (TWA) Drilliidae Olson, 1964 in museum and private collections has resulted in the recognition of numerous previously undescribed species, 100 of which are proposed here for the first time. A total of 65 names were found in the literature. Of these, 48 are considered valid, 16 synonyms, and one nomen dubium. In addition, characteristics that distinguish each genus currently in use for TWA shallow water species have indicated the need for reassignment (new combinations within Drilliidae) of 15 species. Some nomenclatural actions have come about from the literature review and include one taxon placed in junior synonymy (under an older name recently re-discovered) and one new name for a junior homonym. Two neotypes, five lectotype designations, and one new name are also proposed. Altogether, nomenclatural actions on 17% of valid previously described taxa are proposed. The 100 proposed names are placed in 12 available and one new genus: Agladrillia Woodring, 1928 (2), Bellaspira Conrad, 1868 (7), Calliclava McLean, 1971 (3), Cerodrillia Bartsch & Rehder, 1939 (11), Clathrodrillia Dall, 1918 (6), Decoradrillia, new genus (4), Douglassia Bartsch, 1934 (4), Fenimorea Bartsch, 1934 (15), Leptadrillia Woodring, 1928 (12), Lissodrillia Bartsch & Rehder, 1939 (8), Neodrillia Bartsch, 1943 (2), Splendrillia Hedley, 1922 (13), and Syntomodrillia Woodring, 1928 (13). These are the first reports of Calliclava in the western Atlantic, previously known only from the eastern Pacific. The new genus, Decoradrillia, is proposed to hold four new species and one existing that share a unique shell microsculpture and other morphological traits. One genus, Drillia Gray, 1838, is not currently believed to have TWA representatives. Three genera comprised exclusively of bathyal species are not treated in this work: Clavus Monfort, 1810 (=Eldridgea Bartsch, 1934), Globidrillia

  13. Physical factors affecting the abundance and species richness of fishes in the shallow waters of the southern Bothnian Sea (Sweden)

    NASA Astrophysics Data System (ADS)

    Thorman, Staffan

    1986-03-01

    The relationship between the composition of the fish assemblages and the abiotic environment in seven shallow areas within the same geographical range in the southern Bothnian Sea were studied in May, July, September and November 1982. Eighteen species were found in the areas and the major species were Pungitius pungitius (L.), Pomatoschistus minutus (Pallas), Gasterosteus aculeatus (L.), Phoxinus phoxinus (L.), Pomatoschistus microps (Krøyer) and Gobius niger L. The main purpose of the study was to examine the possible effects of exposure, organic contents in sediments and habitat heterogeneity on species richness and abundance of the assemblages. There was a negative correlation between the organic contents of the sediment and exposure. There were no significant correlations between exposure, organic contents, size of the areas and species numbers but habitat heterogeneity was positively correlated with species number. There were no correlations between fish abundance and heterogeneity of the areas. Negative correlations occurred between the exposure of the areas and fish abundance. The amounts of the pooled benthic fauna were negatively correlated to the exposure. The species/area hypothesis finds no support in the results, because there was no correlation between habitat heterogeneity of an area and its size. The effective fetch combined with the heterogeneity measurement of the areas seemed to be useful indicators of the species composition and fish abundance. Habitat heterogeneity and exposure were the most important structuring factors of these shallow water fish assemblages during the ice-free period and within the local geographical range. The assemblages consist of a mixture of species with marine or limnic origin and they have probably not evolved in the Bothnian Sea or together. They are most likely regulated by their physiological plasticity and not by interactions with other species.

  14. Nine New Species of Bugula Oken (Bryozoa: Cheilostomata) in Brazilian Shallow Waters

    PubMed Central

    Vieira, Leandro M.; Winston, Judith E.; Fehlauer-Ale, Karin H.

    2012-01-01

    Background Bugula is a speciose genus of marine bryozoans, represented by both endemic and cosmopolitan species distributed in tropical and temperate waters and important to marine biologists because of the occurrence of many species in harbor and fouling communities, therefore as potential invaders. The southeastern Brazilian coast in the southern Atlantic hosts the highest known diversity of the genus, a status intimately associated with the intensity of collecting efforts. Methodology Morphological data based on the examination of living specimens, scanning electron and light microscopic images, and morphometric analyses were used to assess the diversity of Bugula along the coastal areas of southern, northeastern, and southeastern Brazil. In this study, morphological species boundaries were based mainly on avicularian characters. For two morphologically very similar species, boundaries are partially supported by 16 S rDNA molecular data. Results Nine species are newly described from Brazil, as follows: Bugula bowiei n. sp. ( = Bugula turrita sensu Marcus, 1937) from the southern, northeastern, and southeastern coasts; Bugula foliolata n. sp. ( = Bugula flabellata sensu Marcus, 1938), Bugula guara n. sp., Bugula biota n. sp. and Bugula ingens n. sp from the southeastern coast; Bugula gnoma n. sp. and Bugula alba n. sp. from the northeastern coast; Bugula rochae n. sp. ( = Bugula uniserialis sensu Marcus, 1937) from the southern coast; and Bugula migottoi n. sp., from the southeastern and southern coasts. Conclusion The results contribute to the morphological characterization and the knowledge of the species richness of the genus in the southwestern Atlantic (i.e., Brazil), through the description of new species in poorly sampled areas and also on the southeastern coast of that country. Additionally, the taxonomic status of the Brazilian specimens attributed to B. flabellata, B. turrita and B. uniserialis are clarified by detailed studies on zooidal

  15. Color pattern variation in a shallow-water species of opisthobranch mollusc.

    PubMed

    Valdés, Ángel; Ornelas-Gatdula, Elysse; Dupont, Anne

    2013-02-01

    The color pattern of benthic opisthobranch sea slugs (Mollusca: Gastropoda) appears to play an important defensive role, and numerous species seem to have aposematic (warning) colorations. Color pattern is an important trait for opisthobranch identification-this conclusion is based on the assumption that most species have limited color variation. For those species in which color variation is recognized, the reasons for the variation remain unknown. In this paper we study Philinopsis pusa, a benthic putative species of opisthobranch sea slug with a broad range of color pattern. Lighter individuals appear to be camouflaged on the white sand environment in which the animals are typically found, whereas darker individuals appear conspicuously different from their background. Because of its broad color variation, P. pusa has been subdivided into different species. Animals were collected and observed in the Bahamas during a 6-year span. The color pattern of the specimens was subjectively classified into five phenotypic classes. Two mitochondrial genes (16S, CO1) were sequenced from 41 specimens. The association between color pattern, body length, burrowing escaping behavior, and the genetic structure of the population was investigated. We found two genetically distinct groups in the target population but no significant association between color pattern and genetic structure. Additionally, there was no significant association between color pattern and ontogeny or defensive behavior in these organisms. The present paper suggests that general assumptions on the biological and evolutionary role of color in opisthobranchs need to be carefully evaluated.

  16. Species boundaries and phylogenetic relationships between Atlanto-Mediterranean shallow-water and deep-sea coral associated Hexadella species (Porifera, Ianthellidae).

    PubMed

    Reveillaud, Julie; Remerie, Thomas; van Soest, Rob; Erpenbeck, Dirk; Cárdenas, Paco; Derycke, Sofie; Xavier, Joana R; Rigaux, Annelien; Vanreusel, Ann

    2010-07-01

    Coral reefs constitute the most diverse ecosystem of the marine realm and an increasing number of studies are focusing on coral species boundaries, distribution, and on processes that control species ranges. However, less attention has been paid to coral associated species. Deep-sea sponges dominate cold-water coral ecosystems, but virtually nothing is known about their molecular diversity. Moreover, species boundaries based on morphology may sometimes be inadequate, since sponges have few diagnostic characters. In this study, we investigated the molecular diversity within the genus Hexadella (Porifera, Demospongiae, Verongida, Ianthellidae) from the European shallow-water environment to the deep-sea coral ecosystems. Three molecular markers were used: one mitochondrial (COI) and two nuclear gene fragments (28S rDNA and the ATPS intron). Phylogenetic analyses revealed deeply divergent deep-sea clades congruent across the mitochondrial and nuclear markers. One clade contained specimens from the Irish, the Scottish, and the Norwegian margins and the Greenland Sea (Hexadella dedritifera) while another clade contained specimens from the Ionian Sea, the Bay of Biscay, and the Irish margin (H. cf. dedritifera). Moreover, these deeply divergent deep-sea clades showed a wide distribution suggesting a connection between the reefs. The results also point to the existence of a new deep-sea species (Hexadella sp.) in the Mediterranean Sea and of a cryptic shallow-water species (Hexadella cf. pruvoti) in the Gorringe Bank. In contrast, low genetic differentiation between H. cf. dedritifera and H. pruvoti from the Mediterranean Sea was observed. All Hexadella racovitzai specimens from the Mediterranean Sea (shallow and deep) to the Atlantic formed a monophyletic group.

  17. Molecular dynamics simulations of the Nip7 proteins from the marine deep- and shallow-water Pyrococcus species

    PubMed Central

    2014-01-01

    Background The identification of the mechanisms of adaptation of protein structures to extreme environmental conditions is a challenging task of structural biology. We performed molecular dynamics (MD) simulations of the Nip7 protein involved in RNA processing from the shallow-water (P. furiosus) and the deep-water (P. abyssi) marine hyperthermophylic archaea at different temperatures (300 and 373 K) and pressures (0.1, 50 and 100 MPa). The aim was to disclose similarities and differences between the deep- and shallow-sea protein models at different temperatures and pressures. Results The current results demonstrate that the 3D models of the two proteins at all the examined values of pressures and temperatures are compact, stable and similar to the known crystal structure of the P. abyssi Nip7. The structural deviations and fluctuations in the polypeptide chain during the MD simulations were the most pronounced in the loop regions, their magnitude being larger for the C-terminal domain in both proteins. A number of highly mobile segments the protein globule presumably involved in protein-protein interactions were identified. Regions of the polypeptide chain with significant difference in conformational dynamics between the deep- and shallow-water proteins were identified. Conclusions The results of our analysis demonstrated that in the examined ranges of temperatures and pressures, increase in temperature has a stronger effect on change in the dynamic properties of the protein globule than the increase in pressure. The conformational changes of both the deep- and shallow-sea protein models under increasing temperature and pressure are non-uniform. Our current results indicate that amino acid substitutions between shallow- and deep-water proteins only slightly affect overall stability of two proteins. Rather, they may affect the interactions of the Nip7 protein with its protein or RNA partners. PMID:25315147

  18. Application of DNA barcoding in biodiversity studies of shallow-water octocorals: molecular proxies agree with morphological estimates of species richness in Palau

    NASA Astrophysics Data System (ADS)

    McFadden, C. S.; Brown, A. S.; Brayton, C.; Hunt, C. B.; van Ofwegen, L. P.

    2014-06-01

    The application of DNA barcoding to anthozoan cnidarians has been hindered by their slow rates of mitochondrial gene evolution and the failure to identify alternative molecular markers that distinguish species reliably. Among octocorals, however, multilocus barcodes can distinguish up to 70 % of morphospecies, thereby facilitating the identification of species that are ecologically important but still very poorly known taxonomically. We tested the ability of these imperfect DNA barcodes to estimate species richness in a biodiversity survey of the shallow-water octocoral fauna of Palau using multilocus ( COI, mtMutS, 28S rDNA) sequences obtained from 305 specimens representing 38 genera of octocorals. Numbers and identities of species were estimated independently (1) by a taxonomic expert using morphological criteria and (2) by assigning sequences to molecular operational taxonomic units (MOTUs) using predefined genetic distance thresholds. Estimated numbers of MOTUs ranged from 73 to 128 depending on the barcode and distance threshold applied, bracketing the estimated number of 118 morphospecies. Concordance between morphospecies identifications and MOTUs ranged from 71 to 75 % and differed little among barcodes. For the speciose and ecologically dominant genus Sinularia, however, we were able to identify 95 % of specimens correctly simply by comparing mtMutS sequences and in situ photographs of colonies to an existing vouchered database. Because we lack a clear understanding of species boundaries in most of these taxa, numbers of morphospecies and MOTUs are both estimates of the true species diversity, and we cannot currently determine which is more accurate. Our results suggest, however, that the two methods provide comparable estimates of species richness for shallow-water Indo-Pacific octocorals. Use of molecular barcodes in biodiversity surveys will facilitate comparisons of species richness and composition among localities and over time, data that do not

  19. A new species of Monocheres Stock (Copepoda, Siphonostomatoida, Asterocheridae) from shallow waters off Florida, USA: an unexpected discovery

    PubMed Central

    Suárez-Morales, Eduardo

    2016-01-01

    Abstract The rare asterocherid copepod genus Monocheres, ectosymbionts of corals and sponges, contains only two species, one from Mauritius (Indian Ocean) and the other one from Brazil (western Atlantic). From the analysis of the digestive caecum contents of the benthic hesionid polychaete Hesione picta Müller, 1858, an adult female of an undescribed species of Monocheres was unexpectedly recovered; it is the third species of this rare asterocherid genus. The new species, Monocheres sergioi sp. n., has the distinctive reduction of the fifth leg as a process with a single seta. It differs from its two other congeners by several characters including the presence of an inner basipodal spine, the armature details of the third exopodal segment of leg 1, the shape of the cephalosome and pedigerous somites 3 and 4, and the ornamentation of the postero-lateral corners of the genital double-somite. The main synapomorphies include the presence of spinules along the posterior margin of the first leg coxal sclerite and the reduced, spiniform coxal seta on leg 4. The biology and feeding habits of the polychaete containing this specimen suggests that the copepod was ingested as an ectosymbiont from sponges or coral but it is also possible that it was consumed from an ophiurid echinoderm. This finding allows an expansion of the genus geographical distribution in the northwestern Atlantic. A key to the species of Monocheres is also provided. PMID:27551233

  20. A new species of Monocheres Stock (Copepoda, Siphonostomatoida, Asterocheridae) from shallow waters off Florida, USA: an unexpected discovery.

    PubMed

    Suárez-Morales, Eduardo

    2016-01-01

    The rare asterocherid copepod genus Monocheres, ectosymbionts of corals and sponges, contains only two species, one from Mauritius (Indian Ocean) and the other one from Brazil (western Atlantic). From the analysis of the digestive caecum contents of the benthic hesionid polychaete Hesione picta Müller, 1858, an adult female of an undescribed species of Monocheres was unexpectedly recovered; it is the third species of this rare asterocherid genus. The new species, Monocheres sergioi sp. n., has the distinctive reduction of the fifth leg as a process with a single seta. It differs from its two other congeners by several characters including the presence of an inner basipodal spine, the armature details of the third exopodal segment of leg 1, the shape of the cephalosome and pedigerous somites 3 and 4, and the ornamentation of the postero-lateral corners of the genital double-somite. The main synapomorphies include the presence of spinules along the posterior margin of the first leg coxal sclerite and the reduced, spiniform coxal seta on leg 4. The biology and feeding habits of the polychaete containing this specimen suggests that the copepod was ingested as an ectosymbiont from sponges or coral but it is also possible that it was consumed from an ophiurid echinoderm. This finding allows an expansion of the genus geographical distribution in the northwestern Atlantic. A key to the species of Monocheres is also provided. PMID:27551233

  1. Shallow water marine gammaridean amphipods of Pulau Tioman, Malaysia, with the description of a new species

    PubMed Central

    Azman, B.A.R.; Othman, B.H.R.

    2013-01-01

    Abstract Eleven taxa including one new species of gammaridean amphipods are reported from the waters of Pulau Tioman. The presence of Tethygeneia sunda sp. n. represents the first record of the genus from the South China Sea. Additional material of Ampelisca brevicornis (Costa, 1853); Cymadusa vadosa Imbach, 1967; Paradexamine setigera Hirayama, 1984; Ericthonius pugnax (Dana, 1853); Leucothoe furina (Savigny, 1816); Microlysias xenokeras (Stebbing, 1918); Monoculodes muwoni Jo, 1990 are identified from the South China Sea, supporting previous records by Lowry (2000), Huang (1994), Imbach (1967), Margulis (1968) and Nagata (1959). Three additional species, Gitanopsis pusilla K.H. Barnard, 1916, Liljeborgia japonica Nagata, 1965b and Latigammaropsis atlantica (Stebbing, 1888), whilst previously reported from the neighbouring waters, comprise new records for the South China Sea. PMID:24146563

  2. Shallow water marine gammaridean amphipods of Pulau Tioman, Malaysia, with the description of a new species.

    PubMed

    Azman, B A R; Othman, B H R

    2013-01-01

    Eleven taxa including one new species of gammaridean amphipods are reported from the waters of Pulau Tioman. The presence of Tethygeneia sunda sp. n. represents the first record of the genus from the South China Sea. Additional material of Ampelisca brevicornis (Costa, 1853); Cymadusa vadosa Imbach, 1967; Paradexamine setigera Hirayama, 1984; Ericthonius pugnax (Dana, 1853); Leucothoe furina (Savigny, 1816); Microlysias xenokeras (Stebbing, 1918); Monoculodes muwoni Jo, 1990 are identified from the South China Sea, supporting previous records by Lowry (2000), Huang (1994), Imbach (1967), Margulis (1968) and Nagata (1959). Three additional species, Gitanopsis pusilla K.H. Barnard, 1916, Liljeborgia japonica Nagata, 1965b and Latigammaropsis atlantica (Stebbing, 1888), whilst previously reported from the neighbouring waters, comprise new records for the South China Sea.

  3. 77 FR 19146 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-30

    ... of the GOA (77 FR 15194, March 14, 2012), for the period 1200 hrs, A.l.t., January 20, 2012, through..., octopuses, and sculpins. This prohibition does not apply to fishing for pollock by vessels using...

  4. 77 FR 54837 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-06

    ... of the GOA (77 FR 15194, March 14, 2012), for the period 1200 hrs, A.l.t., September 1, 2012, through..., octopuses, and sculpins. This prohibition does not apply to fishing for pollock by vessels using...

  5. 77 FR 33103 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-05

    ... of the GOA (77 FR 15194, March 14, 2012), for the period 1200 hrs, A.l.t., April 1, 2012, through..., octopuses, and sculpins. This prohibition does not apply to fishing for pollock by vessels using...

  6. 76 FR 59064 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-23

    ... under Sec. 679.21(d)(7)(i) on September 3, 2011 (76 FR 55726, September 7, 2011) and subsequent reopener from September 14, 2011 to September 16, 2011 (76 FR 57679, September 16, 2011). As of September 19..., sharks, sculpins, and octopus. Classification This action responds to the best available...

  7. 77 FR 42193 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-18

    ... specifications for groundfish of the GOA (77 FR 15194, March 14, 2012), for the period 1200 hrs, A.l.t., July 1..., octopuses, and sculpins. This prohibition does not apply to fishing for pollock by vessels using...

  8. Shallow-water conservation laws

    NASA Astrophysics Data System (ADS)

    Ostapenko, V. V.

    2015-10-01

    The derivation of basic conservation laws in the shallow-water theory from the multidimensional integral laws of conservation of mass and total momentum describing the plane-parallel flow of an ideal incompressible fluid above a horizontal bottom is proposed. The restrictions on flow parameters arising in this case have the integral form and are much weaker in comparison with the requirement of flow potentiality and the condition of long-wavelength approximation. The last fact substantiates the use of the shallow-water model for the mathematical modeling of a much wider class of wave flows, the parameters of which are not related directly to the restrictions of the long-wavelength approximation.

  9. Sabellaria jeramae, a new species (Annelida: Polychaeta: Sabellariidae) from the shallow waters of Malaysia, with a note on the ecological traits of reefs.

    PubMed

    Nishi, Eijiroh; Matsuo, Kanako; Capa, Maria; Tomioka, Shinri; Kajihara, Hiroshi; Kupriyanova, Elena K; Polgar, Gianluca

    2015-12-07

    A new species of the genus Sabellaria Lamarck, 1818 (Annelida: Polychaeta: Sabellariidae) is described from the intertidal zone of Jeram, Selangor, Malaysia. Sabellaria jeramae n. sp. is a gregarious species that constructs large reefs several hundreds of meters long and 50-200 m wide. The new species is distinguished from other congeners by the character combination of the presence of a single kind of middle paleae with conspicuous morphology, and outer paleae with long frayed teeth. Morphological features of the species are described and compared to those of all congeneric species. We also compare the reef structure and geographical distribution of the new species to those of the members of the family Sabellariidae around the world, demonstrating the ecological traits of the reefs.

  10. Sabellaria jeramae, a new species (Annelida: Polychaeta: Sabellariidae) from the shallow waters of Malaysia, with a note on the ecological traits of reefs.

    PubMed

    Nishi, Eijiroh; Matsuo, Kanako; Capa, Maria; Tomioka, Shinri; Kajihara, Hiroshi; Kupriyanova, Elena K; Polgar, Gianluca

    2015-01-01

    A new species of the genus Sabellaria Lamarck, 1818 (Annelida: Polychaeta: Sabellariidae) is described from the intertidal zone of Jeram, Selangor, Malaysia. Sabellaria jeramae n. sp. is a gregarious species that constructs large reefs several hundreds of meters long and 50-200 m wide. The new species is distinguished from other congeners by the character combination of the presence of a single kind of middle paleae with conspicuous morphology, and outer paleae with long frayed teeth. Morphological features of the species are described and compared to those of all congeneric species. We also compare the reef structure and geographical distribution of the new species to those of the members of the family Sabellariidae around the world, demonstrating the ecological traits of the reefs. PMID:26701452

  11. Distribution of sea urchins living near shallow water CO2 vents is dependent upon species acid-base and ion-regulatory abilities.

    PubMed

    Calosi, P; Rastrick, S P S; Graziano, M; Thomas, S C; Baggini, C; Carter, H A; Hall-Spencer, J M; Milazzo, M; Spicer, J I

    2013-08-30

    To reduce the negative effect of climate change on Biodiversity, the use of geological CO2 sequestration has been proposed; however leakage from underwater storages may represent a risk to marine life. As extracellular homeostasis is important in determining species' ability to cope with elevated CO2, we investigated the acid-base and ion regulatory responses, as well as the density, of sea urchins living around CO2 vents at Vulcano, Italy. We conducted in situ transplantation and field-based laboratory exposures to different pCO2/pH regimes. Our results confirm that sea urchins have some ability to regulate their extracellular fluid under elevated pCO2. Furthermore, we show that even in closely-related taxa divergent physiological capabilities underlie differences in taxa distribution around the CO2 vent. It is concluded that species distribution under the sort of elevated CO2 conditions occurring with leakages from geological storages and future ocean acidification scenarios, may partly be determined by quite subtle physiological differentiation. PMID:23428288

  12. Shallow water sound propagation with surface waves.

    PubMed

    Tindle, Chris T; Deane, Grant B

    2005-05-01

    The theory of wavefront modeling in underwater acoustics is extended to allow rapid range dependence of the boundaries such as occurs in shallow water with surface waves. The theory allows for multiple reflections at surface and bottom as well as focusing and defocusing due to reflection from surface waves. The phase and amplitude of the field are calculated directly and used to model pulse propagation in the time domain. Pulse waveforms are obtained directly for all wavefront arrivals including both insonified and shadow regions near caustics. Calculated waveforms agree well with a reference solution and data obtained in a near-shore shallow water experiment with surface waves over a sloping bottom.

  13. Surface Towed CSEM Systems for Shallow Water Mapping

    NASA Astrophysics Data System (ADS)

    Sherman, J.; Constable, S.; Kannberg, P. K.

    2015-12-01

    We have developed a low-power, surface towed electric dipole-dipole system suitable for mapping seafloor geology in shallow water and deployable from small boats. The transmitter is capable of up to 50 amps output using 12 VDC from a 110/240 VAC power supply, and can generate an arbitrary GPS stabilized ternary waveform. Transmitter antennas are typically 50 to 100 m long. Receivers are built around the standard Scripps seafloor electrode, amplifier, and logging systems but housed in floating PVC cases and equipped with GPS timing and positioning, pitch/roll/heading sensors, and accelerometers. Receiver dipoles are 1.5 m long rigid booms held 1 m below the surface. As with the Scripps deep-towed Vulcan system, rigid antennas are used to avoid noise associated with flexible antennas moving across Earth's magnetic field. The tow cable is a simple floating rope up to 1000 m long. Water depth and conductivity are sampled continuously in order to provide constraints for apparent resistivity calculations and inversion, and moored seafloor recorders can be used to extend transmitter/receiver offsets. The entire system can be air freighted and transported in one utility vehicle. We will present results from a study to map permafrost in shallow water off Prudhoe Bay, Alaska.

  14. Marine mammal audibility of selected shallow-water survey sources.

    PubMed

    MacGillivray, Alexander O; Racca, Roberto; Li, Zizheng

    2014-01-01

    Most attention about the acoustic effects of marine survey sound sources on marine mammals has focused on airgun arrays, with other common sources receiving less scrutiny. Sound levels above hearing threshold (sensation levels) were modeled for six marine mammal species and seven different survey sources in shallow water. The model indicated that odontocetes were most likely to hear sounds from mid-frequency sources (fishery, communication, and hydrographic systems), mysticetes from low-frequency sources (sub-bottom profiler and airguns), and pinnipeds from both mid- and low-frequency sources. High-frequency sources (side-scan and multibeam) generated the lowest estimated sensation levels for all marine mammal species groups.

  15. Review of factors affecting the distribution and abundance of waterfowl in shallow-water habitats of Chesapeake Bay

    USGS Publications Warehouse

    Perry, M.C.; Deller, A.S.

    1996-01-01

    Long-term trends of waterfowl populations in Chesapeake Bay demonstrate the importance of shallow-water habitats for waterfowl species. Although recent increases in field feeding by geese and swans lessened the importance of shallow-water areas for these species, most duck species depend almost exclusively on shallow-water habitats. Many factors influenced the distribution and abundance of waterfowl in shallow-water habitats. Habitat degradation resulted in the decline in numbers of most duck species and a change in distribution of some species. Increased numbers of mallards (Anas platyrhynchos) in recent decades probably resulted from release programs conducted by the Maryland Department of Natural Resources and private individuals. Studies of food habits since 1885 showed a decline in submerged-aquatic vegetation in the diet of some species, such as the canvasback (Aythya valisineria ), and an increase in the proportions of invertebrates in the diet. Diversity of food organisms for many waterfowl species has declined. Surveys of vegetation and invertebrates in the Chesapeake Bay generally reflect a degradation of shallow-water habitat. Human population increases in the Chesapeake Bay watershed directly and indirectly affected waterfowl distribution and abundance. The increase of exotic plant and invertebrate species in the bay, in most cases, benefited waterfowl populations. Increased contaminants have reduced the quality and quantity of habitat, although serious attempts to reverse this trend are underway. The use of shallow-water habitats by humans for fishing, hunting, boating, and other recreational and commercial uses reduced the use of shallow-water habitats by waterfowl. Humans can lessen the adverse influences on the valuable shallow-water habitats by restricting human population growth near these habitats and improving the water quality of the bay tributaries. Other affirmative actions that will improve these areas for waterfowl include greater

  16. Wave turbulence in shallow water models

    NASA Astrophysics Data System (ADS)

    Clark di Leoni, P.; Cobelli, P. J.; Mininni, P. D.

    2014-06-01

    We study wave turbulence in shallow water flows in numerical simulations using two different approximations: the shallow water model and the Boussinesq model with weak dispersion. The equations for both models were solved using periodic grids with up to 20482 points. In all simulations, the Froude number varies between 0.015 and 0.05, while the Reynolds number and level of dispersion are varied in a broader range to span different regimes. In all cases, most of the energy in the system remains in the waves, even after integrating the system for very long times. For shallow flows, nonlinear waves are nondispersive and the spectrum of potential energy is compatible with ˜k-2 scaling. For deeper (Boussinesq) flows, the nonlinear dispersion relation as directly measured from the wave and frequency spectrum (calculated independently) shows signatures of dispersion, and the spectrum of potential energy is compatible with predictions of weak turbulence theory, ˜k-4/3. In this latter case, the nonlinear dispersion relation differs from the linear one and has two branches, which we explain with a simple qualitative argument. Finally, we study probability density functions of the surface height and find that in all cases the distributions are asymmetric. The probability density function can be approximated by a skewed normal distribution as well as by a Tayfun distribution.

  17. Wave turbulence in shallow water models.

    PubMed

    Clark di Leoni, P; Cobelli, P J; Mininni, P D

    2014-06-01

    We study wave turbulence in shallow water flows in numerical simulations using two different approximations: the shallow water model and the Boussinesq model with weak dispersion. The equations for both models were solved using periodic grids with up to 2048{2} points. In all simulations, the Froude number varies between 0.015 and 0.05, while the Reynolds number and level of dispersion are varied in a broader range to span different regimes. In all cases, most of the energy in the system remains in the waves, even after integrating the system for very long times. For shallow flows, nonlinear waves are nondispersive and the spectrum of potential energy is compatible with ∼k{-2} scaling. For deeper (Boussinesq) flows, the nonlinear dispersion relation as directly measured from the wave and frequency spectrum (calculated independently) shows signatures of dispersion, and the spectrum of potential energy is compatible with predictions of weak turbulence theory, ∼k{-4/3}. In this latter case, the nonlinear dispersion relation differs from the linear one and has two branches, which we explain with a simple qualitative argument. Finally, we study probability density functions of the surface height and find that in all cases the distributions are asymmetric. The probability density function can be approximated by a skewed normal distribution as well as by a Tayfun distribution. PMID:25019897

  18. A spreading drop of shallow water

    NASA Astrophysics Data System (ADS)

    Jarecka, Dorota; Jaruga, Anna; Smolarkiewicz, Piotr K.

    2015-05-01

    The theoretical solutions and corresponding numerical simulations of Schär and Smolarkiewicz (1996) [3] are revisited. The original abstract problem of a parabolic, slab-symmetric drop of shallow water spreading under gravity is extended to three spatial dimensions, with the initial drop defined over an elliptical compact support. An axisymmetric drop is considered as a special case. The elliptical drop exhibits enticing dynamics, which may appear surprising at the first glance. In contrast, the evolution of the axisymmetric drop is qualitatively akin to the evolution of the slab-symmetric drop and intuitively obvious. Besides being interesting per se, the derived theoretical results provide a simple means for testing numerical schemes concerned with wetting-drying areas in shallow water flows. Reported calculations use the libmpdata++, a recently released free/libre and open-source software library of solvers for generalized transport equations. The numerical results closely match theoretical predictions, demonstrating strengths of the nonoscillatory forward-in-time integrators comprising the libmpdata++.

  19. Seismic Observations in Shallow Water (Invited)

    NASA Astrophysics Data System (ADS)

    Webb, S. C.; Barclay, A. H.; Gassier, D.; Koczynski, T.

    2013-12-01

    The establishment of fleets of large numbers of ocean bottom seismometers (OBS) capable of recording for more than a year has made it possible to study Earth structure beneath the oceans using seismic observations in much greater resolution than previously possible. However, shallow water poses strong challenges for OBS deployments, with much higher noise levels from waves and currents. The on-going Cascadia Initiative, a major OBS community project directed at studying the Cascadia subduction zone with its megathrust earthquake potential and broad continental shelf, includes OBS deployments at depths as shallow as 50 m. Before the Cascadia deployment, there was a valid fear that the data from the shallowest sites would be useless for seismic observations. The shallow Cascadia OBS deployments feature shielding to protect the sensors from the flow of ocean floor currents (and trawling), The first year data show that the shielding can reduce horizontal component noise levels (due to currents) by more than 20dB permitting good SNR for horizontal phases even at shelf depths. Noise from deformation under ocean wave loading has been found to be very large at the shallowest sites. High amplitude ocean waves cause the differential pressure gauges (DPG) and unshielded seismic sensors at a few sites to sometimes clip, but shielded seismic sensors and pressure measurements from absolute pressure gauges (APGs) remain unclipped even at the shallowest sites. The study demonstrates pressure gauge records can be used to predict and remove the noise from the deformation under ocean wave loading in the spectral domain, potentially improving signal to noise for long period seismic phases by up to 40dB. A FIR digital filter can be created from the pressure to acceleration transfer function that when convolved with the pressure record accurately predicts the wave loading signal allowing removal of about 30dB of this noise. These results show that with proper shielding, good quality

  20. Arc instability in shallow water wet welding

    SciTech Connect

    Nixon, J.H.; Graham, S.R.B.

    1993-12-31

    A series of wet welding trials, undertaken at Cranfield as part of a larger program, examined the relative stability of the process across a range of shallow water depths. The effect of welder skill, and the use of computer based data logging equipment, was also evaluated. By means of the data logging system, it was confirmed that welding carried out at a depth of 6 meters was markedly more stable than similar welds at 1.5 and 3 meters. Objective effects of welder skill were also noted, most markedly the ability of the skilled welder to operate at lower arc voltages and travel speeds. The use of the computer based data logging and analysis system was of great assistance in the program, and the use of similar equipment is highly recommended.

  1. Shallow water surface gravity wave imaging, spectra and their use in shallow water dredging operations

    NASA Astrophysics Data System (ADS)

    Bostater, Charles R.; Yang, Bingyu

    2014-10-01

    Imaging of shallow waters using high resolution video imagery is described. Common to mono, stereo and trinocular imaging approaches from ground and airborne platforms is the need to validate the surface water wave field measurements, particularly the amplitude and specular reflectance of water surface small gravity waves. A technique for calibration and validation of water surface gravity wave field energy spectra is described. Results demonstrate the value of video imagery where water level staff gauges with approximately with 0.5 cm wave height accuracy are easily sensed using high definition videography. Essentially, a staff gauge placed in shallow water constructed from PVC materials with custom colored line coding are imaged at 30 H or high frame rates, followed by frame by frame analyses in order to detect the water level measured at 0.5 cm height intervals. The image based time series allow the development of shallow water gravity wave energy spectra using standard FFT analysis procedures. Spectral models based upon peak frequency, for example, are then used in a two dimensional water surface wave simulation model that generates radiative transfer based hyperspectral images of the water surface wave field. The simulated and observed water surface wave patch fields are compared by extracting vertical or horizontal transects within observed and simulated imagery. The approach allows one to developed spectral energy model probability distributions at low cost. The novel noncontact video sensing and image analysis methodology used to calibrate and validate shallow water gravity wave models yield a means for ultimately calculating bottom boundary velocities under measured or simulated wave fields. These boundary layer velocities can cause migration and horizontal particle fluxes (g cm-2 s-1), resuspension, settling, and increased turbidity during dredging operations, but not necessarily due to waterway dredging operations and activities.

  2. Mercury in fishes of Alaska, with emphasis on subsistence species.

    PubMed

    Jewett, Stephen C; Duffy, Lawrence K

    2007-11-15

    In the north, the presence of mercury (Hg) in food leading to chronic exposure is a scientific, economic and political issue. Guidelines have been established for the safe consumption of fish containing Hg, however, adherence to these guidelines must be weighed against the health benefits of consuming fish, such as from the omega-3 polyunsaturated fatty acids, vitamins and minerals. Alaskan Natives generally consume much more fish than the national average. This review summarizes and synthesizes the significant amount of data that has been generated on Hg in Alaska fish, particularly those consumed by Alaskans. Also included are a review of the benefits of eating fish, human health concerns relating to Hg toxicity and various risk assessment guidelines for food consumption. Emphasis was placed on methylmercury (MeHg), the most toxic form to humans. Hg concentrations were examined in 17 freshwater fish species and 24 anadromous and marine fish species, for a total of 2,692 specimens. For freshwater fish the greatest database was on northern pike (Esox lucius). For anadromous and marine fish the greatest database was on Pacific halibut (Hippoglossus stenolepis) and the five species of Pacific salmon (Oncorhynchus spp.). Overall, most fish had muscle Hg concentrations of < or =1 mg kg(-1) (wet wt.), within the USFDA's Action Level and Alaska's guideline for safe concentrations of MeHg in edible fish. Pacific salmon, the most commonly consumed fish group, had exceptionally low (< or =0.1 mg kg(-1)) Hg concentrations. Pacific halibut muscle Hg content was less than 0.3 mg kg(-1). Northern pike, a piscivorous (fish-eating) and long-lived fish, contained the highest muscle Hg values, often exceeding the state's guidelines for food consumption. A discussion of the safe consumption level for pike is included. PMID:17825359

  3. Species List of Alaskan Birds, Mammals, Fish, Amphibians, Reptiles, and Invertebrates. Alaska Region Report Number 82.

    ERIC Educational Resources Information Center

    Taylor, Tamra Faris

    This publication contains a detailed list of the birds, mammals, fish, amphibians, reptiles, and invertebrates found in Alaska. Part I lists the species by geographical regions. Part II lists the species by the ecological regions of the state. (CO)

  4. Caribbean Shallow-water Black Corals (Cnidaria: Anthozoa: Antipatharia)

    SciTech Connect

    Opresko, Dennis M; Sanchez, Juan Armando

    2005-01-01

    Our aim is to provide a complete key and guide to the species of black corals from the Caribbean reefs at depths shallower than about 100 m. The key to the species is mostly based on colonial features that are recognized in the field, although some closely related species can only be differentiated by microscopic skeletal features. Each species is illustrated with one or more photos showing the size and shape of the colony; many photos were taken in the natural environment to facilitate underwater identification. Additionally, a short description is provided of each species and their microscopic diagnostic characters are illustrated with the aid of the Scanning Electron Microscope (SEM). Fifteen black coral species are found in relatively shallow-water in the Caribbean, Gulf of Mexico, and other parts of the tropical western Atlantic; these belong to the families Myriopathidae [Tanacetipathes hirta (Gray), T. tanacetum (Pourtales), T. barbadensis (Brook), T. thamnea (Warner), and Plumapathes pennacea (Pallas)]; Antipathidae [Antipathes lenta Pourtales, A. rubusifonnis Warner and Opresko, A. furcata Gray, A. umbratica Opresko, A. atlantica Gray, A. gracilis Gray, A. caribbeana Opresko, Stichopathes lutkeni Brook, and S. accidentalis (Gray)]; and Aphanipathidae [Rhipidipathes colombiana (Opresko and Sinchez)]. We hope that this guide will facilitate research on black corals on Caribbean reefs, where population surveys are urgently needed to evaluate or modify conservation policies.

  5. Shallow water model for horizontal centrifugal casting

    NASA Astrophysics Data System (ADS)

    Boháček, J.; Kharicha, A.; Ludwig, A.; Wu, M.

    2012-07-01

    A numerical model was proposed to simulate the solidification process of an outer shell of work roll made by the horizontal centrifugal casting technique. Shallow water model was adopted to solve the 2D average flow dynamics of melt spreading and the average temperature distribution inside the centrifugal casting mould by considering the centrifugal force, Coriolis force, viscous force due to zero velocity on the mould wall, gravity, and energy transport by the flow. Additionally, a 1D sub-model was implemented to consider the heat transfer in the radial direction from the solidifying shell to the mould. The solidification front was tracked by fulfilling the Stefan condition. Radiative and convective heat losses were included from both, the free liquid surface and the outer wall of the mould. Several cases were simulated with the following assumed initial conditions: constant height of the liquid metal (10, 20, and 30 mm), uniform temperature of the free liquid surface (1755 K). The simulation results have shown that while the solidification front remained rather flat, the free surface was disturbed by waves. The amplitude of waves increased with the liquid height. Free surface waves diminished as the solidification proceeded.

  6. Polarization of light in shallow waters

    NASA Astrophysics Data System (ADS)

    Gilerson, Alexander; Ibrahim, Amir; Stepinski, Jan; Ahmed, Samir

    2013-10-01

    Measurements of the upwelling polarized radiance in relatively shallow waters of varying depths and benthic conditions are compared to simulationsrevealing the depolarizing nature of the seafloor. Significant correlations between simulations and measurements are attained when the appropriate unpolarized, Lambertian bottoms are included in the radiative transfer model. The bottoms used in this study produce realistic upwelling radiance distributions as well as ranges of the degree of linear polarization (DoLP) that peak between 10 and 30%. This study specifically finds that polarization in upwelling radiance is best preserved at long wavelengths in clear waters and also at short wavelengths in phytoplankton- and CDOM-rich waters. These results can thus facilitate the detection of benthic materials as well as future studies of camouflage by benthic biota.The DoLPwas found to be highly sensitive to benthic reflectance, but the angle of polarization (AoLP), which quantifies the orientation of polarization, is independent of it. The AoLP could therefore be used to communicate and sense direction underwater.

  7. A modified siphon sampler for shallow water

    USGS Publications Warehouse

    Diehl, Timothy H.

    2008-01-01

    A modified siphon sampler (or 'single-stage sampler') was developed to sample shallow water at closely spaced vertical intervals. The modified design uses horizontal rather than vertical sample bottles. Previous siphon samplers are limited to water about 20 centimeters (cm) or more in depth; the modified design can sample water 10 cm deep. Several mounting options were used to deploy the modified siphon sampler in shallow bedrock streams of Middle Tennessee, while minimizing alteration of the stream bed. Sampling characteristics and limitations of the modified design are similar to those of the original design. Testing showed that the modified sampler collects unbiased samples of suspended silt and clay. Similarity of the intake to the original siphon sampler suggests that the modified sampler would probably take downward-biased samples of suspended sand. Like other siphon samplers, it does not sample isokinetically, and the efficiency of sand sampling can be expected to change with flow velocity. The sampler needs to be located in the main flow of the stream, and is subject to damage from rapid flow and floating debris. Water traps were added to the air vents to detect the flow of water through the sampler, which can cause a strong upward bias in sampled suspended-sediment concentration. Water did flow through the sampler, in some cases even when the top of the air vent remained above water. Air vents need to be extended well above maximum water level to prevent flow through the sampler.

  8. Combined effects of climate change and bank stabilization on shallow water habitats of chinook salmon.

    PubMed

    Jorgensen, Jeffrey C; McClure, Michelle M; Sheer, Mindi B; Munn, Nancy L

    2013-12-01

    Significant challenges remain in the ability to estimate habitat change under the combined effects of natural variability, climate change, and human activity. We examined anticipated effects on shallow water over low-sloped beaches to these combined effects in the lower Willamette River, Oregon, an area highly altered by development. A proposal to stabilize some shoreline with large rocks (riprap) would alter shallow water areas, an important habitat for threatened Chinook salmon (Oncorhynchus tshawytscha), and would be subject to U.S. Endangered Species Act-mandated oversight. In the mainstem, subyearling Chinook salmon appear to preferentially occupy these areas, which fluctuate with river stages. We estimated effects with a geospatial model and projections of future river flows. Recent (1999-2009) median river stages during peak subyearling occupancy (April-June) maximized beach shallow water area in the lower mainstem. Upstream shallow water area was maximized at lower river stages than have occurred recently. Higher river stages in April-June, resulting from increased flows predicted for the 2080s, decreased beach shallow water area 17-32%. On the basis of projected 2080s flows, more than 15% of beach shallow water area was displaced by the riprap. Beach shallow water area lost to riprap represented up to 1.6% of the total from the mouth to 12.9 km upstream. Reductions in shallow water area could restrict salmon feeding, resting, and refuge from predators and potentially reduce opportunities for the expression of the full range of life-history strategies. Although climate change analyses provided useful information, detailed analyses are prohibitive at the project scale for the multitude of small projects reviewed annually. The benefits of our approach to resource managers include a wider geographic context for reviewing similar small projects in concert with climate change, an approach to analyze cumulative effects of similar actions, and estimation of the

  9. Combined effects of climate change and bank stabilization on shallow water habitats of chinook salmon.

    PubMed

    Jorgensen, Jeffrey C; McClure, Michelle M; Sheer, Mindi B; Munn, Nancy L

    2013-12-01

    Significant challenges remain in the ability to estimate habitat change under the combined effects of natural variability, climate change, and human activity. We examined anticipated effects on shallow water over low-sloped beaches to these combined effects in the lower Willamette River, Oregon, an area highly altered by development. A proposal to stabilize some shoreline with large rocks (riprap) would alter shallow water areas, an important habitat for threatened Chinook salmon (Oncorhynchus tshawytscha), and would be subject to U.S. Endangered Species Act-mandated oversight. In the mainstem, subyearling Chinook salmon appear to preferentially occupy these areas, which fluctuate with river stages. We estimated effects with a geospatial model and projections of future river flows. Recent (1999-2009) median river stages during peak subyearling occupancy (April-June) maximized beach shallow water area in the lower mainstem. Upstream shallow water area was maximized at lower river stages than have occurred recently. Higher river stages in April-June, resulting from increased flows predicted for the 2080s, decreased beach shallow water area 17-32%. On the basis of projected 2080s flows, more than 15% of beach shallow water area was displaced by the riprap. Beach shallow water area lost to riprap represented up to 1.6% of the total from the mouth to 12.9 km upstream. Reductions in shallow water area could restrict salmon feeding, resting, and refuge from predators and potentially reduce opportunities for the expression of the full range of life-history strategies. Although climate change analyses provided useful information, detailed analyses are prohibitive at the project scale for the multitude of small projects reviewed annually. The benefits of our approach to resource managers include a wider geographic context for reviewing similar small projects in concert with climate change, an approach to analyze cumulative effects of similar actions, and estimation of the

  10. 77 FR 46338 - Fisheries of the Economic Exclusive Zone Off Alaska; Deep-Water Species Fishery by Vessels Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-03

    ... groundfish of the GOA (77 FR 15194, March 14, 2012), for the period 1200 hrs, A.l.t., July 1, 2012, through... Exclusive Zone Off Alaska; Deep-Water Species Fishery by Vessels Using Trawl Gear in the Gulf of Alaska... comprise the deep-water species fishery by vessels using trawl gear in the Gulf of Alaska (GOA)....

  11. Shallow Water Optical Water Quality Buoy

    NASA Technical Reports Server (NTRS)

    Bostater, Charles

    1998-01-01

    This NASA grant was funded as a result of an unsolicited proposal submission to Kennedy Space Center. The proposal proposed the development and testing of a shallow water optical water quality buoy. The buoy is meant to work in shallow aquatic systems (ponds, rivers, lagoons, and semi-enclosed water areas where strong wind wave action is not a major environmental During the project period of three years, a demonstration of the buoy was conducted. The last demonstration during the project period was held in November, 1996 when the buoy was demonstrated as being totally operational with no tethered communications line. During the last year of the project the buoy was made to be solar operated by large gel cell batteries. Fund limitations did not permit the batteries in metal enclosures as hoped for higher wind conditions, however the system used to date has worked continuously for in- situ operation of over 18 months continuous deployment. The system needs to have maintenance and somewhat continuous operational attention since various components have limited lifetime ages. For example, within the last six months the onboard computer has had to be repaired as it did approximately 6 months after deployment. The spectrograph had to be repaired and costs for repairs was covered by KB Science since no ftmds were available for this purpose after the grant expired. Most recently the computer web page server failed and it is currently being repaired by KB Science. In addition, the cell phone operation is currently being ftmded by Dr. Bostater in order to maintain the system's operation. The above points need to be made to allow NASA to understand that like any sophisticated measuring system in a lab or in the field, necessary funding and maintenance is needed to insure the system's operational state and to obtain quality factor. The proposal stated that the project was based upon the integration of a proprietary and confidential sensor and probe design that was developed by

  12. Deep and Shallow Water Effects on Developing Preschoolers’ Aquatic Skills

    PubMed Central

    Costa, Aldo M.; Marinho, Daniel A.; Rocha, Helena; Silva, António J.; Barbosa, Tiago M.; Ferreira, Sandra S.; Martins, Marta

    2012-01-01

    The aim of the study was to assess deep and shallow water teaching methods in swimming lessons for preschool children and identify variations in the basic aquatic skills acquired. The study sample included 32 swimming instructors (16 from deep water programs and 16 from shallow water programs) and 98 preschool children (50 from deep water swimming pool and 48 from shallow water swimming pool). The children were also studied regarding their previous experience in swimming (6, 12 and 18 months or practice). Chi-Square test and Fisher’s exact test were used to compare the teaching methodology. A discriminant analysis was conducted with Λ wilk’s method to predict under what conditions students are better or worse (aquatic competence). Results suggest that regardless of the non-significant variations found in teaching methods, the water depth can affect aquatic skill acquisition - shallow water lessons seem to impose greater water competence particularly after 6 months of practice. The discriminant function revealed a significant association between groups and all predictors for 6 months of swimming practice (p<0.001). Body position in gliding and leg displacements were the main predictors. For 12 and 18 months of practice, the discriminant function do not revealed any significant association between groups. As a conclusion, it seems that the teaching methodology of aquatic readiness based on deep and shallow water programs for preschoolers is not significantly different. However, shallow water lessons could be preferable for the development of basic aquatic skills. PMID:23487406

  13. The Role of Shallow Waters in the Life Cycle of the Bahrain Penaeid Shrimps

    NASA Astrophysics Data System (ADS)

    Abdulqader, E. A. A.

    1999-08-01

    Tubli Bay and shallow areas south of 'Fasht Al-Adhom' are known for their importance to Bahrain penaeid shrimps. The role of these shallow waters in the Bahrain penaeid shrimp life cycle was studied in Tubli Bay. Plankton, beam and otter trawl samples were collected on a biweekly basis from May 1991 to June 1992. Otter trawl sampling was extended to June 1993. Four penaeid species were found in the area. Ranked by decreasing abundance, these species are Penaeus semisulcatus De Haan 1844, Metapenaeus stebbingi Nobili 1904, M. kutchensisGeorge, George & Rao, 1963, and P. latisulcatus Kishinouye 1896. The presence of two egg types in the plankton collection, and mature females of both M. stebbingi and M. kutchensis indicate that both species spawned in these shallow waters. Tubli Bay is an important nursery ground for both P. semisulcatus and M. stebbingi. However, this bay does not support the entire stock of P. semisulcatus. Post-spawning return migration to shallow waters is noted for P. semisulcatus. Tubli Bay is of minor importance as a nursery ground for both P. latisulcatus and M. kutchensis. Other penaeid species found in Bahrain waters are not dependent on Tubli Bay during their life cycles. These species include, Trachypenaeus curvirostris Stimpson (1860), Metapenaeopsis stridulans Alcock (1905), and M. mogiensis Rathbun (1902).

  14. Rhodotorula portillonensis sp. nov., a basidiomycetous yeast isolated from Antarctic shallow-water marine sediment.

    PubMed

    Laich, Federico; Vaca, Inmaculada; Chávez, Renato

    2013-10-01

    During the characterization of the mycobiota associated with shallow-water marine environments from Antarctic sea, a novel pink yeast species was isolated. Sequence analysis of the D1/D2 domain of the LSU rDNA gene and 5.8S-ITS regions revealed that the isolated yeast was closely related to Rhodotorula pallida CBS 320(T) and Rhodotorula benthica CBS 9124(T). On the basis of morphological, biochemical and physiological characterization and phylogenetic analyses, a novel basidiomycetous yeast species, Rhodotorula portillonensis sp. nov., is proposed. The type strain is Pi2(T) ( = CBS 12733(T)  = CECT 13081(T)) which was isolated from shallow-water marine sediment in Fildes Bay, King George Island, Antarctica. PMID:23934251

  15. New records for the shallow-water chiton fauna (Mollusca, Polyplacophora) of the Azores (NE Atlantic).

    PubMed

    Avila, Sérgio P; Sigwart, Julia

    2013-01-01

    Published records, original data from recent field work on all of the islands of the Azores (NE Atlantic), and a revision of the entire mollusc collection deposited in the Department of Biology of the University of the Azores (DBUA) were used to compile a checklist of the shallow-water Polyplacophora of the Azores. Lepidochitona cf. canariensis and Tonicella rubra are reported for the first time for this archipelago, increasing the recorded Azorean fauna to seven species.

  16. New records for the shallow-water chiton fauna (Mollusca, Polyplacophora) of the Azores (NE Atlantic).

    PubMed

    Avila, Sérgio P; Sigwart, Julia

    2013-01-01

    Published records, original data from recent field work on all of the islands of the Azores (NE Atlantic), and a revision of the entire mollusc collection deposited in the Department of Biology of the University of the Azores (DBUA) were used to compile a checklist of the shallow-water Polyplacophora of the Azores. Lepidochitona cf. canariensis and Tonicella rubra are reported for the first time for this archipelago, increasing the recorded Azorean fauna to seven species. PMID:23825446

  17. Estimation of freak wave occurrence in shallow water regions

    NASA Astrophysics Data System (ADS)

    Kashima, Hiroaki

    2014-05-01

    In the last two decades, freak waves have become an important topic in engineering and science and are sometimes featured by a single and steep crest causing severe damage to offshore structures and vessels. An accurate estimation of maximum wave height and prediction of freak wave occurrence frequency is important for marine safety and ocean developments. According to several studies on freak waves, the deep-water third-order nonlinearity (quasi-resonant four-wave interactions) can lead to a significant enhancement of freak wave occurrence from normality. However, it is not clear the behavior of offshore generated freak waves shoaling to shallow water regions. In general, a numerical simulation based on Boussinesq model has been frequently and widely used to estimate wave transformation in shallow water regions and has high-level performance in the design of coast and harbor structures in Japan. However, it is difficult to describe the freak wave occurrence from deep to shallow water regions by the Boussinesq model because it can express only up to the second-order nonlinear interactions. There is a gap of governing equation between deep and shallow water regions from the extreme wave modeling point of view. It is necessary to investigate the aftereffects of generated freak waves by the third-order nonlinear interactions in deep water regions and their propagation to shallow water regions using the Boussinesq model. In this study, the model experiments in a wave tank and numerical simulations based on the Boussinesq model were conducted to estimate the freak wave occurrence from deep to shallow water regions. In the model experiments, the maximum wave height increases with an increase in kurtosis by the third-order nonlinear interactions in deep water regions. The dependence of kurtosis on freak wave occurrence weakens by the second-order nonlinear interactions associated with wave shoaling if dimensionless water depth kph becomes shallower than 1.363, which kp

  18. Conservation Properties of Numerical Schemes for the Shallow Water Equations

    NASA Astrophysics Data System (ADS)

    Eldred, Chris; Randall, David

    2014-05-01

    The shallow water equations provide a useful analogue of fully compressible Euler equations since they have similar conservation laws, many of the same types of waves and a similar (quasi-) balanced state. With regards to conservation properties, there have been two major thrusts of research: Hamiltonian methods (work done by Salmon and Dubois, primarily) and Discrete Exterior Calculus (DEC; Thuburn, Cotter, Ringler, etc.). In particular, recent work done by Thuburn and Cotter (2011) introduced a generalized framework for energy-conservative C-grid discretizations of the rotating shallow water equation using ideas from Discrete Exterior Calculus. The current research elucidates the connections between the Hamiltonian and DEC approaches, and looks at potential enstrophy conservation in addition to energy conservation. Finally, a generalized framework for mimetic total energy and potential enstrophy conserving discretizations of the rotating shallow water equation in vorticity-divergence form (also using the DEC approach) is developed.

  19. Alaska

    NASA Technical Reports Server (NTRS)

    2002-01-01

    Though it's not quite spring, waters in the Gulf of Alaska (right) appear to be blooming with plant life in this true-color MODIS image from March 4, 2002. East of the Alaska Peninsula (bottom center), blue-green swirls surround Kodiak Island. These colors are the result of light reflecting off chlorophyll and other pigments in tiny marine plants called phytoplankton. The bloom extends southward and clear dividing line can be seen west to east, where the bloom disappears over the deeper waters of the Aleutian Trench. North in Cook Inlet, large amounts of red clay sediment are turning the water brown. To the east, more colorful swirls stretch out from Prince William Sound, and may be a mixture of clay sediment from the Copper River and phytoplankton. Arcing across the top left of the image, the snow-covered Brooks Range towers over Alaska's North Slope. Frozen rivers trace white ribbons across the winter landscape. The mighty Yukon River traverses the entire state, beginning at the right edge of the image (a little way down from the top) running all the way over to the Bering Sea, still locked in ice. In the high-resolution image, the circular, snow-filled calderas of two volcanoes are apparent along the Alaska Peninsula. In Bristol Bay (to the west of the Peninsula) and in a couple of the semi-clear areas in the Bering Sea, it appears that there may be an ice algae bloom along the sharp ice edge (see high resolution image for better details). Ground-based observations from the area have revealed that an under-ice bloom often starts as early as February in this region and then seeds the more typical spring bloom later in the season.

  20. Acoustic MIMO communications in a very shallow water channel

    NASA Astrophysics Data System (ADS)

    Zhou, Yuehai; Cao, Xiuling; Tong, Feng

    2015-12-01

    Underwater acoustic channels pose significant difficulty for the development of high speed communication due to highly limited band-width as well as hostile multipath interference. Enlightened by rapid progress of multiple input multiple output (MIMO) technologies in wireless communication scenarios, MIMO systems offer a potential solution by enabling multiple spatially parallel communication channels to improve communication performance as well as capacity. For MIMO acoustic communications, deep sea channels offer substantial spatial diversity among multiple channels that can be exploited to address simultaneous multipath and co-channel interference. At the same time, there are increasing requirements for high speed underwater communication in very shallow water area (for example, a depth less than 10 m). In this paper, a space-time multichannel adaptive receiver consisting of multiple decision feedback equalizers (DFE) is adopted as the receiver for a very shallow water MIMO acoustic communication system. The performance of multichannel DFE receivers with relatively small number of receiving elements are analyzed and compared with that of the multichannel time reversal receiver to evaluate the impact of limited spatial diversity on multi-channel equalization and time reversal processing. The results of sea trials in a very shallow water channel are presented to demonstrate the feasibility of very shallow water MIMO acoustic communication.

  1. Computing nonhydrostatic shallow-water flow over steep terrain

    USGS Publications Warehouse

    Denlinger, R.P.; O'Connell, D. R. H.

    2008-01-01

    Flood and dambreak hazards are not limited to moderate terrain, yet most shallow-water models assume that flow occurs over gentle slopes. Shallow-water flow over rugged or steep terrain often generates significant nonhydrostatic pressures, violating the assumption of hydrostatic pressure made in most shallow-water codes. In this paper, we adapt a previously published nonhydrostatic granular flow model to simulate shallow-water flow, and we solve conservation equations using a finite volume approach and an Harten, Lax, Van Leer, and Einfeldt approximate Riemann solver that is modified for a sloping bed and transient wetting and drying conditions. To simulate bed friction, we use the law of the wall. We test the model by comparison with an analytical solution and with results of experiments in flumes that have steep (31??) or shallow (0.3??) slopes. The law of the wall provides an accurate prediction of the effect of bed roughness on mean flow velocity over two orders of magnitude of bed roughness. Our nonhydrostatic, law-of-the-wall flow simulation accurately reproduces flume measurements of front propagation speed, flow depth, and bed-shear stress for conditions of large bed roughness. ?? 2008 ASCE.

  2. Thermal shallow water models of geostrophic turbulence in Jovian atmospheres

    SciTech Connect

    Warneford, Emma S. Dellar, Paul J.

    2014-01-15

    Conventional shallow water theory successfully reproduces many key features of the Jovian atmosphere: a mixture of coherent vortices and stable, large-scale, zonal jets whose amplitude decreases with distance from the equator. However, both freely decaying and forced-dissipative simulations of the shallow water equations in Jovian parameter regimes invariably yield retrograde equatorial jets, while Jupiter itself has a strong prograde equatorial jet. Simulations by Scott and Polvani [“Equatorial superrotation in shallow atmospheres,” Geophys. Res. Lett. 35, L24202 (2008)] have produced prograde equatorial jets through the addition of a model for radiative relaxation in the shallow water height equation. However, their model does not conserve mass or momentum in the active layer, and produces mid-latitude jets much weaker than the equatorial jet. We present the thermal shallow water equations as an alternative model for Jovian atmospheres. These equations permit horizontal variations in the thermodynamic properties of the fluid within the active layer. We incorporate a radiative relaxation term in the separate temperature equation, leaving the mass and momentum conservation equations untouched. Simulations of this model in the Jovian regime yield a strong prograde equatorial jet, and larger amplitude mid-latitude jets than the Scott and Polvani model. For both models, the slope of the non-zonal energy spectra is consistent with the classic Kolmogorov scaling, and the slope of the zonal energy spectra is consistent with the much steeper spectrum observed for Jupiter. We also perform simulations of the thermal shallow water equations for Neptunian parameter values, with a radiative relaxation time scale calculated for the same 25 mbar pressure level we used for Jupiter. These Neptunian simulations reproduce the broad, retrograde equatorial jet and prograde mid-latitude jets seen in observations. The much longer radiative time scale for the colder planet Neptune

  3. Source rock potential of shallow-water evaporitic settings

    SciTech Connect

    Warren, J.K.

    1986-05-01

    In the major evaporitic environments on the world's surface today, most organic matter accumulates in shallow subaqueous to seasonally subaerially exposed, algal-mat sediments. Given the present depositional setting, this organic matter probably could not be preserved to form source rocks. However, if the authors place such evaporite deposition into a geologic context, source rocks could have formed in shallow-water settings in the past. Such settings were characterized by hydrologic conditions that allowed the retention of hypersaline, anoxic pore water to depths where the organic material was buried deep enough to generate hydrocarbons. When deep-basin, shallow-water, evaporite successions were laid down in basins such as the Mediterranean during the late Miocene, the Michigan basin during the Silurian, and in other large saline giants, conditions were right for source rocks to form within shallow-water and salt-flat evaporitic environments. The evaporites in these saline giants were deposited under conditions of relatively shallow water (< 50 m); the basin never appears to have dried out, but water levels changed quickly (approx. 10,000 years) from shallow to deep. Continual water saturation coupled with saline pore fluids prevented the inflow of fresh, oxidizing ground water into the basin center of shallow-water organic-rich evaporites. Immature hydrocarbons derived from such rocks today drip from the 5.5-m.y. old evaporites of Sicily in active salt and sulfur mines. Organic-rich sediments could also be preserved to generate hydrocarbons in rapidly subsiding rift basins. In such basins, rapid burial has prevented the entrance of fresher oxygenated waters and the associated degradation and destruction of the organic matter. The early continental rift stage generates the source rocks; the ephemeral streams, wadis, and dune fields become the reservoirs, and the subsequent evaporite stage seals the reservoir.

  4. 76 FR 39790 - Fisheries of the Economic Exclusive Zone Off Alaska; Deep-Water Species Fishery by Catcher...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-07

    ... GOA (76 FR 11111, March 1, 2011). In accordance with Sec. 679.82(d)(9)(i)(B), the Administrator... Exclusive Zone Off Alaska; Deep-Water Species Fishery by Catcher Vessels in the Gulf of Alaska AGENCY... the deep-water species fishery for catcher vessels subject to sideboard limits established under...

  5. Critical fishery species in Alaska offshore oil and gas lease areas

    SciTech Connect

    Arbegast, J.; Allen, M.

    1980-11-01

    Offshore oil and gas development in Alaska is governed through sales of lease blocks in designated areas. USBLM manages these sales and prepares the necessary environmental impact statement prior to each sale. Collected fishery data are tabulated, linking critical crustacean and fishery species with their associated lease areas. Listed are critical species, organized by taxonomic name, associated common name, and taxonomic code numbers. Each critical species is linked to one or more of the lease area numbers, derived from USBLM planning units.

  6. Bumble bees (Hymenoptera: Apidae: Bombus spp.) of interior Alaska: Species composition, distribution, seasonal biology, and parasites

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Despite the ecological and agricultural significance of bumble bees in Alaska, very little is known and published about this important group at the regional level. The objectives of this study were to provide baseline data on species composition, distribution, seasonal biology, and parasites of the ...

  7. Moose as a vector for non-indigenous plant species in Alaska

    Technology Transfer Automated Retrieval System (TEKTRAN)

    White sweetclover and narrowleaf hawksbeard are non-indigenous invasive plant species in Alaska that are rapidly spreading, including into areas that are otherwise free of non-indigenous plants. There has been concern that native moose could be dispersing viable seed from these plants after ingestio...

  8. Shallow-water System Dynamics in Chesapeake Bay, with Physical-Biological Modeling Application

    NASA Astrophysics Data System (ADS)

    Tian, R.; Wang, P.; Linker, L. C.

    2014-12-01

    Chesapeake Bay is the largest estuary in the United States. The total surface area is 9920 square kilometers of which 7540 square kilometers are shallower than 10 m. These shallow systems provide vital habitats and nursery grounds for numerous species of fish, shellfish, and wildlife. In the Chesapeake the shallow water systems have deteriorated in terms of healthy ecosystem levels and submerged aquatic vegetation (SAV). Restoration of the shallow water systems requires an understanding of their dynamics including wave-current interactions, shoreline erosion, sediment suspension, biological and biogeochemical processes, sediment diagenesis, sediment-water exchange, and diel cycles of temperature, salinity, turbidity, alkalinity, chlorophyll, nutrients, and dissolved oxygen (DO). To this end, an extensive shallow water monitoring program has been implemented in the Chesapeake since 2003. The program includes bi-weekly cruises of nutrient sampling, a continuous monitoring network with electronic sensors collecting data at a 15 minute interval, and a unique data flow survey from moving boats that collect underway observations with a datum frequency of seconds. The data reveal large diel cycles, with chlorophyll varying between a few mg/l to hundreds of mg/l, DO between 0 to 20 mg/l (with saturation from 0 to 250%), turbidity between 0 to 1500 NTUs, and pH from 6.0 to 9.5, which demonstrate the highly dynamic nature in physical and biological process of the shallow water systems . In order to better understand the key mechanisms and processes of these shallow-water systems and to explore the monitoring data, we applied a coupled physical and water quality model to the Chester and Corsica tributaries. The physical model is the Unstructured Finite Volume Coastal Ocean Model (FVCOM) and the water quality model is the Integrated Compartment Model (ICM) which has 36 state variables such as phytoplankton, zooplankton, DO, nutrients, and various organic matter and sediment

  9. Wind wave prediction in shallow water: Theory and applications

    SciTech Connect

    Cavaleri, L.; Rizzoli, P.M.

    1981-11-20

    A wind wave forecasting model is described, based upon the ray technique, which is specifically designed for shallow water areas. The model explicitly includes wave generation, refraction, and shoaling, while nonlinear dissipative processes (breaking and bottom fricton) are introduced through a suitable parametrization. The forecast is provided at a specified time and target position, in terms of a directional spectrum, from which the one-dimensional spectrum and the significant wave height are derived. The model has been used to hindcast storms both in shallow water (Northern Adriatic Sea) and in deep water conditions (Tyrrhenian Sea). The results have been compared with local measurements, and the rms error for the significant wave height is between 10 and 20%. A major problems has been found in the correct evaluation of the wind field.

  10. Nonlinear waves in compressible shallow water magnetohydrodynemic equations

    NASA Astrophysics Data System (ADS)

    Klimachkov, Dmitry; Petrosyan, Arakel

    2016-04-01

    Compressible magnetohydrodynamic equations for a plasma in a gravity field with a free surface in shallow water approximation are obtained. Compressibility means that the pressure is a function of height. It is shown that classical shallow water incompressible magnetohydrodynamic equations are modified with a new argument instead of a layer height. We found all the simple discontinuous and continuous wave solutions for these equations, the wave velocities are obtained. Rankine-Hugoniot jump conditions for the velocities and magnetic field in the discontinuity are obtained. The Riemann problem for the arbitrary discontinuity is solved. It was found that the decay of arbitrary discontinuity causes five different configurations. For each configuration, we found the conditions necessary and sufficient for its implementation.

  11. Nonlinear and linear bottom interaction effects in shallow water

    NASA Technical Reports Server (NTRS)

    Shemdin, O.; Hsiao, S. V.; Hasselmann, K.; Herterich, K.

    1978-01-01

    The paper examines wave-energy dissipation rates in shallow water calculated from measured wave spectra at different distances from the shore. Different linear and nonlinear transfer and dissipation mechanisms are discussed. The various data sets are interpreted in terms of prevailing mechanisms at the respective sites. The incorporation of different processes in a predictive shallow-water model is outlined. The analysis suggests that bottom motion is primarily responsible for wave-energy dissipation in the Delta Region of the Gulf of Mexico, that friction is mainly responsible for wave-energy dissipation in Marineland, Panama City and Melkbosstrand, and that percolation is probably the dominant mechanism in the JONSWAP area of the North Sea.

  12. Validation of Numerical Shallow Water Models for Tidal Lagoons

    SciTech Connect

    Eliason, D.; Bourgeois, A.

    1999-11-01

    An analytical solution is presented for the case of a stratified, tidally forced lagoon. This solution, especially its energetics, is useful for the validation of numerical shallow water models under stratified, tidally forced conditions. The utility of the analytical solution for validation is demonstrated for a simple finite difference numerical model. A comparison is presented of the energetics of the numerical and analytical solutions in terms of the convergence of model results to the analytical solution with increasing spatial and temporal resolution.

  13. Semi-Lagrangian shallow water modeling on the CM-5

    SciTech Connect

    Nadiga, B.T.; Margolin, L.G.; Smolarkiewicz, P.K.

    1995-09-01

    We discuss the parallel implementation of a semi-Lagrangian shallow-water model on the massively parallel Connection Machine CM-5. The four important issues we address in this article are (i) two alternative formulations of the elliptic problem and their relative efficiencies, (ii) the performance of two successive orders of a generalized conjugate residual elliptic solver, (iii) the time spent in unstructured communication -- an unavoidable feature of semi-Lagrangian schemes, and (iv) the scalability of the algorithm.

  14. A semi-Lagrangian approach to the shallow water equation

    NASA Technical Reports Server (NTRS)

    Bates, J. R.; Mccormick, Stephen F.; Ruge, John; Sholl, David S.; Yavneh, Irad

    1993-01-01

    We present a formulation of the shallow water equations that emphasizes the conservation of potential vorticity. A locally conservative semi-Lagrangian time-stepping scheme is developed, which leads to a system of three coupled PDE's to be solved at each time level. We describe a smoothing analysis of these equations, on which an effective multigrid solver is constructed. Some results from applying this solver to the static version of these equations are presented.

  15. Tilted and standard ring solitons in shallow water

    NASA Astrophysics Data System (ADS)

    Mannan, A.

    2015-03-01

    The propagation of nonlinear multiring soliton structures in a shallow water is theoretically investigated. To study this problem, we have derived a cylindrical (or concentric) Korteweg-deVries equation (cKdVE) for an incompressible, inviscid, and irrotational fluid. The cKdVE has been solved analytically and numerically to describe, respectively, the localized multiring structures with tilted and standard boundary conditions.

  16. Shallow water equations: viscous solutions and inviscid limit

    NASA Astrophysics Data System (ADS)

    Chen, Gui-Qiang; Perepelitsa, Mikhail

    2012-12-01

    We establish the inviscid limit of the viscous shallow water equations to the Saint-Venant system. For the viscous equations, the viscosity terms are more degenerate when the shallow water is close to the bottom, in comparison with the classical Navier-Stokes equations for barotropic gases; thus, the analysis in our earlier work for the classical Navier-Stokes equations does not apply directly, which require new estimates to deal with the additional degeneracy. We first introduce a notion of entropy solutions to the viscous shallow water equations and develop an approach to establish the global existence of such solutions and their uniform energy-type estimates with respect to the viscosity coefficient. These uniform estimates yield the existence of measure-valued solutions to the Saint-Venant system generated by the viscous solutions. Based on the uniform energy-type estimates and the features of the Saint-Venant system, we further establish that the entropy dissipation measures of the viscous solutions for weak entropy-entropy flux pairs, generated by compactly supported C 2 test-functions, are confined in a compact set in H -1, which yields that the measure-valued solutions are confined by the Tartar-Murat commutator relation. Then, the reduction theorem established in Chen and Perepelitsa [5] for the measure-valued solutions with unbounded support leads to the convergence of the viscous solutions to a finite-energy entropy solution of the Saint-Venant system with finite-energy initial data, which is relative with respect to the different end-states of the bottom topography of the shallow water at infinity. The analysis also applies to the inviscid limit problem for the Saint-Venant system in the presence of friction.

  17. Model-Based Detection in a Shallow Water Ocean Environment

    SciTech Connect

    Candy, J V

    2001-07-30

    A model-based detector is developed to process shallow water ocean acoustic data. The function of the detector is to adaptively monitor the environment and decide whether or not a change from normal has occurred. Here we develop a processor incorporating both a normal-mode ocean acoustic model and a vertical hydrophone array. The detector is applied to data acquired from the Hudson Canyon experiments at various ranges and its performance is evaluated.

  18. Measurement technique for bottom scattering in shallow water

    PubMed

    Holland; Hollett; Troiano

    2000-09-01

    Sonar performance predictions of reverberation in shallow water rely upon good estimates of the bottom-scattering strength. However, little is understood about bottom scattering in shallow water in the frequency range 400-4000 Hz, particularly its dependency upon frequency and its relationship to the physical properties of the seafloor. In order to address these issues, a new measurement technique has been developed to probe the frequency and angular dependency of bottom-scattering strength. The experimental technique is described which employs either coherent or incoherent sources (lightbulbs). In addition, measurement and modeling results for two diverse shallow water sites are presented. At one site, the scattering appears to arise at or near the water-sediment interface. At the other site, scattering from a 23-m sub-bottom horizon is clearly apparent in the data at and below 1800 Hz. The fact that our measurement technique can directly reveal the presence of sub-bottom scattering is a significant advance in the development of methods to explore the physical mechanisms that control bottom scattering.

  19. Four new species of Haplosclerida (Porifera, Demospongiae) from the Aleutian Islands, Alaska.

    PubMed

    Lehnert, Helmut; Stone, Robert P

    2013-01-01

    Four new species of Haplosclerida are described from the Aleutian Islands, Alaska: Callyspongia mucosa n.sp., Cladocroce infundibulum n. sp., Cladocroce attu n. sp. and Cladocroce kiska n. sp. The new species are described and compared to congeners of the region. This is the northernmost record of the genus Callyspongia and the first record of the subgenus Callyspongia from the North Pacific Ocean. To accommodate Cladocroce kiska in its genus the definition has to be broadened to allow sigmas.

  20. Community Structure of Macrobiota and Environmental Parameters in Shallow Water Hydrothermal Vents off Kueishan Island, Taiwan.

    PubMed

    Chan, Benny Kwok Kan; Wang, Teng-Wei; Chen, Pin-Chen; Lin, Chia-Wei; Chan, Tin-Yam; Tsang, Ling Ming

    2016-01-01

    Hydrothermal vents represent a unique habitat in the marine ecosystem characterized with high water temperature and toxic acidic chemistry. Vents are distributed at depths ranging from a few meters to several thousand meters. The biological communities of shallow-water vents have, however, been insufficiently studied in most biogeographic areas. We attempted to characterize the macrofauna and macroflora community inhabiting the shallow-water vents off Kueishan Island, Taiwan, to identify the main abiotic factors shaping the community structure and the species distribution. We determined that positively buoyant vent fluid exhibits a more pronounced negative impact to species on the surface water than on the bottom layer. Species richness increased with horizontal distance from the vent, and continuing for a distance of 2000 m, indicating that the vent fluid may exert a negative impact over several kilometers. The community structure off Kueishan Island displayed numerous transitions along the horizontal gradient, which were broadly congruent with changes in environmental conditions. Combination of variation in Ca2+, Cl-, temperature, pH and depth were revealed to show the strongest correlation with the change in benthic community structure, suggesting multiple factors of vent fluid were influencing the associated fauna. Only the vent crabs of Kueishan Island may have an obligated relationship with vents and inhabit the vent mouths because other fauna found nearby are opportunistic taxa that are more tolerant to acidic and toxic environments. PMID:26849440

  1. Community Structure of Macrobiota and Environmental Parameters in Shallow Water Hydrothermal Vents off Kueishan Island, Taiwan.

    PubMed

    Chan, Benny Kwok Kan; Wang, Teng-Wei; Chen, Pin-Chen; Lin, Chia-Wei; Chan, Tin-Yam; Tsang, Ling Ming

    2016-01-01

    Hydrothermal vents represent a unique habitat in the marine ecosystem characterized with high water temperature and toxic acidic chemistry. Vents are distributed at depths ranging from a few meters to several thousand meters. The biological communities of shallow-water vents have, however, been insufficiently studied in most biogeographic areas. We attempted to characterize the macrofauna and macroflora community inhabiting the shallow-water vents off Kueishan Island, Taiwan, to identify the main abiotic factors shaping the community structure and the species distribution. We determined that positively buoyant vent fluid exhibits a more pronounced negative impact to species on the surface water than on the bottom layer. Species richness increased with horizontal distance from the vent, and continuing for a distance of 2000 m, indicating that the vent fluid may exert a negative impact over several kilometers. The community structure off Kueishan Island displayed numerous transitions along the horizontal gradient, which were broadly congruent with changes in environmental conditions. Combination of variation in Ca2+, Cl-, temperature, pH and depth were revealed to show the strongest correlation with the change in benthic community structure, suggesting multiple factors of vent fluid were influencing the associated fauna. Only the vent crabs of Kueishan Island may have an obligated relationship with vents and inhabit the vent mouths because other fauna found nearby are opportunistic taxa that are more tolerant to acidic and toxic environments.

  2. Community Structure of Macrobiota and Environmental Parameters in Shallow Water Hydrothermal Vents off Kueishan Island, Taiwan

    PubMed Central

    Chan, Benny Kwok Kan; Wang, Teng-Wei; Chen, Pin-Chen; Lin, Chia-Wei; Chan, Tin-Yam; Tsang, Ling Ming

    2016-01-01

    Hydrothermal vents represent a unique habitat in the marine ecosystem characterized with high water temperature and toxic acidic chemistry. Vents are distributed at depths ranging from a few meters to several thousand meters. The biological communities of shallow-water vents have, however, been insufficiently studied in most biogeographic areas. We attempted to characterize the macrofauna and macroflora community inhabiting the shallow-water vents off Kueishan Island, Taiwan, to identify the main abiotic factors shaping the community structure and the species distribution. We determined that positively buoyant vent fluid exhibits a more pronounced negative impact to species on the surface water than on the bottom layer. Species richness increased with horizontal distance from the vent, and continuing for a distance of 2000 m, indicating that the vent fluid may exert a negative impact over several kilometers. The community structure off Kueishan Island displayed numerous transitions along the horizontal gradient, which were broadly congruent with changes in environmental conditions. Combination of variation in Ca2+, Cl-, temperature, pH and depth were revealed to show the strongest correlation with the change in benthic community structure, suggesting multiple factors of vent fluid were influencing the associated fauna. Only the vent crabs of Kueishan Island may have an obligated relationship with vents and inhabit the vent mouths because other fauna found nearby are opportunistic taxa that are more tolerant to acidic and toxic environments. PMID:26849440

  3. Bumble Bees (Hymenoptera: Apidae: Bombus spp.) of Interior Alaska: Species Composition, Distribution, Seasonal Biology, and Parasites

    PubMed Central

    Pampell, Rehanon; Pantoja, Alberto; Holloway, Patricia; Knight, Charles; Ranft, Richard

    2015-01-01

    Abstract Background Despite the ecological and agricultural significance of bumble bees in Alaska, very little is known and published about this important group at the regional level. The objectives of this study were to provide baseline data on species composition, distribution, seasonal biology, and parasites of the genus Bombus at three major agricultural locations within Alaska: Fairbanks, Delta Junction, and Palmer, to lay the groundwork for future research on bumble bee pollination in Alaska. New information A total of 8,250 bumble bees representing 18 species was collected from agricultural settings near Delta Junction, Fairbanks, and Palmer, Alaska in 2009 and 2010. Of the 8,250 specimens, 51% were queens, 32.7% were workers, and 16.2% were males. The species composition and relative abundances varied among sites and years. Delta Junction had the highest relative abundance of bumble bees, representing 51.6% of the specimens collected; the other two locations, Fairbanks and Palmer represented 26.5% and 21.8% of the overall catch respectively. The species collected were: Bombus bohemicus Seidl 1837 (= B. ashtoni (Cresson 1864)), B. balteatus Dahlbom 1832, B. bifarius Cresson 1878, B. centralis Cresson 1864, B. cryptarum (Fabricius 1775) (=B. moderatus Cresson 1863), B. distinguendus Morawitz 1869, B. flavidus Eversmann 1852 (=B. fernaldae Franklin 1911), B. flavifrons Cresson 1863, B. frigidus Smith 1854, B. insularis (Smith 1861), B. jonellus (Kirby 1802), B. melanopygus Nylander 1848, B. mixtus Cresson 1878, B. neoboreus Sladen 1919, B. occidentalis Greene 1858, B. perplexus Cresson 1863, B. rufocinctus Cresson 1863, and B. sylvicola Kirby 1837. Overall, the most common bumble bees near agricultural lands were B. centralis, B. frigidus, B. jonellus, B. melanopygus, B. mixtus, and B. occidentalis. Species' relative population densities and local diversity were highly variable from year to year. Bombus occidentalis, believed to be in decline in the Pacific

  4. Cartesian Methods for the Shallow Water Equations on a Sphere

    SciTech Connect

    Drake, J.B.

    2000-02-14

    The shallow water equations in a spherical geometry are solved using a 3-dimensional Cartesian method. Spatial discretization of the 2-dimensional, horizontal differential operators is based on the Cartesian form of the spherical harmonics and an icosahedral (spherical) grid. Computational velocities are expressed in Cartesian coordinates so that a problem with a singularity at the pole is avoided. Solution of auxiliary elliptic equations is also not necessary. A comparison is made between the standard form of the Cartesian equations and a rotational form using a standard set of test problems. Error measures and conservation properties of the method are reported for the test problems.

  5. A depth-dependent formula for shallow water propagation.

    PubMed

    Sertlek, Hüseyin Özkan; Ainslie, Michael A

    2014-08-01

    In shallow water propagation, the sound field depends on the proximity of the receiver to the sea surface, the seabed, the source depth, and the complementary source depth. While normal mode theory can predict this depth dependence, it can be computationally intensive. In this work, an analytical solution is derived in terms of the Faddeeva function by converting a normal mode sum into an integral based on a hypothetical continuum of modes. For a Pekeris waveguide, this approach provides accurate depth dependent propagation results (especially for the surface decoupling) without requiring complex calculation methods for eigenvalues and corresponding eigenfunctions.

  6. Behavior of a shallow water table under periodic flow conditions

    NASA Astrophysics Data System (ADS)

    Cartwright, Nick; Nielsen, Peter; Perrochet, Pierre

    2009-03-01

    A new laboratory data set on the behavior of a shallow water table in a sand column aquifer subject to simple harmonic periodic forcing at its base is presented and discussed. The data are analyzed using the dynamic effective porosity, which is defined as the ratio of the rate of change in total moisture to the rate of change in water table elevation; thus, a reduction in this parameter means that the extent of moisture exchange has been reduced relative to a given water table fluctuation. The data show a clear decrease in the dynamic effective porosity with increasing proximity of the water table to the sand surface, which is consistent with previous research under a steadily rising or falling shallow water table. The observed reduction in moisture exchange due to shallowness of the water table has implications for periodic flow scenarios such as the propagation of water table waves in coastal and beach groundwater systems. That is, as moisture exchange is reduced, less work is being done by the flow, and thus, energy dissipation rates for shallow water tables will be reduced relative to the case of a deeper water table. At present no account of the influence of water table shallowness has been included in theories describing water table wave dispersion. The present experiments, in conjunction with the dynamic effective porosity concept, provide a framework in which this gap in knowledge can be further investigated. Additional experiments were designed such that the free surface transgressed the sand surface for part of the oscillation period to investigate the influence of meniscus formation and deformation at the sand surface on periodic flow dynamics. The observed behavior is consistent with previous observations of steady infiltration above shallow water tables, namely, a rapid drop (rise) in pore pressure with the onset of meniscus formation (deformation). A simple "wetting and drying" model is derived, accounting for the variation in effective porosity

  7. Shallow-water wave lensing in coral reefs: a physical and biological case study.

    PubMed

    Veal, Cameron James; Carmi, Maya; Dishon, Gal; Sharon, Yoni; Michael, Kelvin; Tchernov, Dan; Hoegh-Guldberg, Ove; Fine, Maoz

    2010-12-15

    Wave lensing produces the highest level of transient solar irradiances found in nature, ranging in intensity over several orders of magnitude in just a few tens of milliseconds. Shallow coral reefs can be exposed to wave lensing during light-wind, clear-sky conditions, which have been implicated as a secondary cause of mass coral bleaching through light stress. Management strategies to protect small areas of high-value reef from wave-lensed light stress were tested using seawater irrigation sprinklers to negate wave lensing by breaking up the water surface. A series of field and tank experiments investigated the physical and photophysiological response of the shallow-water species Stylophora pistillata and Favites abdita to wave lensing and sprinkler conditions. Results show that the sprinkler treatment only slightly reduces the total downwelling photosynthetically active and ultraviolet irradiance (∼5.0%), whereas it dramatically reduces, by 460%, the irradiance variability caused by wave lensing. Despite this large reduction in variability and modest reduction in downwelling irradiance, there was no detectable difference in photophysiological response of the corals between control and sprinkler treatments under two thermal regimes of ambient (27°C) and heated treatment (31°C). This study suggests that shallow-water coral species are not negatively affected by the strong flashes that occur under wave-lensing conditions. PMID:21113012

  8. Community structure of age-0 fishes in paired mainstem and created shallow-water habitats in the Lower Missouri River

    USGS Publications Warehouse

    Starks, T. A.; Long, James M.; Dzialowski, Andrew R.

    2016-01-01

    Anthropogenic alterations to aquatic ecosystems have greatly reduced and homogenized riverine habitat, especially those used by larval and juvenile fishes. Creation of shallow-water habitats is used as a restoration technique in response to altered conditions in several studies globally, but only recently in the USA. In the summer of 2012, the U.S. Army Corps of Engineers sampled larval and juvenile fishes at six paired sites (mainstem and constructed chute shallow-water habitats) along a section of the Missouri River between Rulo, NE and St. Louis, MO, USA. From those samples, we enumerated and identified a total of 7622 fishes representing 12 families. Community responses of fishes to created shallow-water habitats were assessed by comparisons of species richness and diversity measures between paired sites and among sampling events. Shannon entropy measures were transformed, and gamma diversity (total diversity) was partitioned into two components, alpha (within community) and beta (between community) diversity using a multiplicative decomposition method. Mantel test results suggest site location, time of sampling event and habitat type were drivers of larval and juvenile community structure. Paired t-test results indicated little to no differences in beta diversity between habitat types; however, chute habitats had significantly higher alpha and gamma diversity as well as increased abundances of Asian carp larvae when compared with mainstem shallow-water habitat. Our results not only show the importance of created shallow-water habitat in promoting stream fish diversity but also highlight the role space and time may play in future restoration and management efforts. 

  9. Characteristics and Propagation of Airgun Pulses in Shallow Water with Implications for Effects on Small Marine Mammals

    PubMed Central

    Hermannsen, Line; Tougaard, Jakob; Beedholm, Kristian; Nabe-Nielsen, Jacob; Madsen, Peter Teglberg

    2015-01-01

    Airguns used in seismic surveys are among the most prevalent and powerful anthropogenic noise sources in marine habitats. They are designed to produce most energy below 100 Hz, but the pulses have also been reported to contain medium-to-high frequency components with the potential to affect small marine mammals, which have their best hearing sensitivity at higher frequencies. In shallow water environments, inhabited by many of such species, the impact of airgun noise may be particularly challenging to assess due to complex propagation conditions. To alleviate the current lack of knowledge on the characteristics and propagation of airgun pulses in shallow water with implications for effects on small marine mammals, we recorded pulses from a single airgun with three operating volumes (10 in3, 25 in3 and 40 in3) at six ranges (6, 120, 200, 400, 800 and 1300 m) in a uniform shallow water habitat using two calibrated Reson 4014 hydrophones and four DSG-Ocean acoustic data recorders. We show that airgun pulses in this shallow habitat propagated out to 1300 meters in a way that can be approximated by a 18log(r) geometric transmission loss model, but with a high pass filter effect from the shallow water depth. Source levels were back-calculated to 192 dB re µPa2s (sound exposure level) and 200 dB re 1 µPa dB Leq-fast (rms over 125 ms duration), and the pulses contained substantial energy up to 10 kHz, even at the furthest recording station at 1300 meters. We conclude that the risk of causing hearing damage when using single airguns in shallow waters is small for both pinnipeds and porpoises. However, there is substantial potential for significant behavioral responses out to several km from the airgun, well beyond the commonly used shut-down zone of 500 meters. PMID:26214849

  10. A temperature-tolerant interstitial worm with associated epibiotic bacteria from the shallow water fumaroles of Deception Island, Antarctica

    NASA Astrophysics Data System (ADS)

    Bright, M.; Arndt, C.; Keckeis, H.; Felbeck, H.

    2003-06-01

    A prominent not previously identified species of Monocelidae (Platyhelminthes, Proseriata) was found in the vicinity of fumarole activity at Fumarole Bay. The distribution of this animal and the metazoan meiobenthos in the vicinity of this area suggests that this species constitutes the most abundant species and the bulk of the biomass at these shallow water fumaroles. In contrast to the other metazoan meiofauna, the distribution of this species is positively correlated with the water temperature and gas emissions, indicating a preference for the areas around fumaroles. The range of temperature tolerated by this animal was determined in in vivo experiments to be at least 30-40°C. The outer surface the animals is colonized by apparently symbiotic bacteria, which are usually rod-like and approximately 0.68 μm wide and 2.07 μm long. The results of this study revealed a remarkable difference between shallow-water and deep-sea hydrothermal vent meiobenthic communities. Generalists capable of tolerating extreme abiotic conditions appear to dominate shallow-water vents, whereas endemism seems to be the rule in the deep-sea vents.

  11. Narrow-multibeam Echosounders Designed for Shallow Water

    NASA Astrophysics Data System (ADS)

    Matsuda, Takeya; Tanabe, Kouichi; Kannda, Hironobu

    The development of technology in electronics, communications and measurements with digital equipment have spawned a lot of new measuring techniques in the fields of researches and thus the conventional research techniques will be replaced by the new ones. Concerning the fields of seafloor topography survey, narrow-multibeam echosounders designed for shallow water have been used in Japan since 5 years ago. This equipment enabled us to obtain bathymetric information in large features at one time more precisely compared with the conventional equipment which obtains seafloor topography as a collection of depths data measured at numerous points. In addition, GPS enabled us to obtain real-time information of its position anywhere on the globe with great precision in three dimensions. Consequently more discoveries in the fields of marine science will be made from the information of the more detailed seafloor topography. This paper will describe some ways to improve the narrow multibeam echosounder system designed for shallow water (SEABAT9001S, Reson) which we, Kokusai Kogyo Co., Ltd., have been working on, and its future prospects.

  12. Unsteady undular bores in fully nonlinear shallow-water theory

    NASA Astrophysics Data System (ADS)

    El, G. A.; Grimshaw, R. H. J.; Smyth, N. F.

    2006-02-01

    We consider unsteady undular bores for a pair of coupled equations of Boussinesq-type which contain the familiar fully nonlinear dissipationless shallow-water dynamics and the leading-order fully nonlinear dispersive terms. This system contains one horizontal space dimension and time and can be systematically derived from the full Euler equations for irrotational flows with a free surface using a standard long-wave asymptotic expansion. In this context the system was first derived by Su and Gardner. It coincides with the one-dimensional flat-bottom reduction of the Green-Naghdi system and, additionally, has recently found a number of fluid dynamics applications other than the present context of shallow-water gravity waves. We then use the Whitham modulation theory for a one-phase periodic travelling wave to obtain an asymptotic analytical description of an undular bore in the Su-Gardner system for a full range of "depth" ratios across the bore. The positions of the leading and trailing edges of the undular bore and the amplitude of the leading solitary wave of the bore are found as functions of this "depth ratio." The formation of a partial undular bore with a rapidly varying finite-amplitude trailing wavefront is predicted for "depth ratios" across the bore exceeding 1.43. The analytical results from the modulation theory are shown to be in excellent agreement with full numerical solutions for the development of an undular bore in the Su-Gardner system.

  13. Shallow water substrate mapping using hyperspectral remote sensing

    NASA Astrophysics Data System (ADS)

    Fearns, P. R. C.; Klonowski, W.; Babcock, R. C.; England, P.; Phillips, J.

    2011-08-01

    During April 2004 the airborne hyperspectral sensor, HyMap, collected data over a shallow coastal region of Western Australia. These data were processed by inversion of a semi-analytical shallow water optical model to classify the substrate. Inputs to the optical model include water column constituent specific inherent optical properties (SIOPs), view and illumination geometry, surface condition (based on wind speed) and normalised reflectance spectra of substrate types. A sub-scene of the HyMap data covering approximately 4 km 2 was processed such that each 3×3 m 2 pixel was classed as sand, seagrass, brown algae or various mixtures of these three components. Coincident video data were collected and used to estimate substrate types. We present comparisons of the habitat classifications determined by these two methods and show that the percentage validation of the remotely sensed habitat map may be optimised by selection of appropriate optical model parameters. The optical model was able to retrieve classes for approximately 80% of all pixels in the scene, with validation percentages of approximately 50% for sand and seagrass classification, and 90% for brown algae classification. The semi-analytical model inversion approach to classification can be expected to be applied to any shallow water region where substrate reflectance spectra and SIOPs are known or can be inferred.

  14. High-rate multiuser communications in shallow water.

    PubMed

    Song, H C; Kim, J S; Hodgkiss, W S; Kuperman, W A; Stevenson, M

    2010-11-01

    Passive multiuser communications in shallow water previously was demonstrated in the 3-4 kHz band using a time reversal approach. This paper extends those experimental results in three respects. First, a larger bandwidth at higher frequency (11-19 kHz) is employed allowing for the use of various symbol rates (or bandwidths). Second, two different shaping pulses are examined: a raised cosine filter and LFM (linear frequency modulation) chirp. Third, the adaptive time reversal approach with spatial nulling is applied to suppress the crosstalk among users. It is shown that the use of a larger bandwidth is beneficial along with the time reversal receiver which can handle significant intersymbol interference with minimal computational complexity. In addition, adding each user degrades the performance by about 4 dB for the benefit of linear increase in data rate. It is demonstrated that an aggregate data rate of 60 kbits/s can be achieved with a 7.5 kHz bandwidth (a spectral efficiency of 8 bits/s Hz) by three users distributed over 4.2-m depth at a 2.2 km range in shallow water using 16-QAM (quadrature amplitude modulation).

  15. Global dynamical behaviors in a physical shallow water system

    NASA Astrophysics Data System (ADS)

    Tchakoutio Nguetcho, Aurélien Serge; Li, Jibin; Bilbault, Jean-Marie

    2016-07-01

    The theory of bifurcations of dynamical systems is used to investigate the behavior of travelling wave solutions in an entire family of shallow water wave equations. This family is obtained by a perturbative asymptotic expansion for unidirectional shallow water waves. According to the parameters of the system, this family can lead to different sets of known equations such as Camassa-Holm, Korteweg-de Vries, Degasperis and Procesi and several other dispersive equations of the third order. Looking for possible travelling wave solutions, we show that different phase orbits in some regions of parametric planes are similar to those obtained with the model of the pressure waves studied by Li and Chen. Many other exact explicit travelling waves solutions are derived as well, some of them being in perfect agreement with solutions obtained in previous works by researchers using different methods. When parameters are varied, the conditions under which the above solutions appear are also shown. The dynamics of singular nonlinear travelling system is completely determined for each of the above mentioned equations. Moreover, we define sufficient conditions leading to the existence of propagating wave solutions and demonstrate how and why travelling waves lose their smoothness and develop into solutions with compact support or breaking waves.

  16. Linear Properties of Numerical Schemes for the Shallow Water Equations

    NASA Astrophysics Data System (ADS)

    Eldred, C.; Randall, D. A.

    2013-12-01

    The shallow water equations provide a useful analogue of fully compressible Euler equations since they have similar conservation laws, many of the same types of waves and a similar (quasi-) balanced state. There has been extensive work exploring the linear properties (balanced states and propagating modes) of various schemes for the shallow water equations on uniform grids, but comparatively little work for non-uniform grids (especially in the case of finite difference and finite volume methods). With the simplifications associated with uniform grids, analytic results for the dispersion relationship and other linear properties can be obtained. However, such grids are not necessarily representative of the actual grids used in dynamical cores on the sphere. Using the Atmospheric Dynamical Core Testbed (ADCoT) built on top of Morphe, the linear properties of various popular finite-difference and finite-volume schemes are examined on both uniform and non-uniform grids (such as the cubed sphere, triangular geodesic and hexagonal-pentagonal geodesic grids).

  17. Solitary wave dynamics in shallow water over periodic topography.

    PubMed

    Nakoulima, Ousseynou; Zahibo, Narcisse; Pelinovsky, Efim; Talipova, Tatiana; Kurkin, Andrey

    2005-09-01

    The problem of long-wave scattering by piecewise-constant periodic topography is studied both for a linear solitary-like wave pulse, and for a weakly nonlinear solitary wave [Korteweg-de Vries (KdV) soliton]. If the characteristic length of the topographic irregularities is larger than the pulse length, the solution of the scattering problem is obtained analytically for a leading wave in the framework of linear shallow-water theory. The wave decrement in the case of the small height of the topographic irregularities is proportional to delta2, where delta is the relative height of the topographic obstacles. An analytical approximate solution is also obtained for the weakly nonlinear problem when the length of the irregularities is larger than the characteristic nonlinear length scale. In this case, the Korteweg-de Vries equation is solved for each piece of constant depth by using the inverse scattering technique; the solutions are matched at each step by using linear shallow-water theory. The weakly nonlinear solitary wave decays more significantly than the linear solitary pulse. Solitary wave dynamics above a random seabed is also discussed, and the results obtained for random topography (including experimental data) are in reasonable agreement with the calculations for piecewise topography. PMID:16253002

  18. Shallow-water sparsity-cognizant source-location mapping.

    PubMed

    Forero, Pedro A; Baxley, Paul A

    2014-06-01

    Using passive sonar for underwater acoustic source localization in a shallow-water environment is challenging due to the complexities of underwater acoustic propagation. Matched-field processing (MFP) exploits both measured and model-predicted acoustic pressures to localize acoustic sources. However, the ambiguity surface obtained through MFP contains artifacts that limit its ability to reveal the location of the acoustic sources. This work introduces a robust scheme for shallow-water source localization that exploits the inherent sparse structure of the localization problem and the use of a model characterizing the acoustic propagation environment. To this end, the underwater acoustic source-localization problem is cast as a sparsity-inducing stochastic optimization problem that is robust to model mismatch. The resulting source-location map (SLM) yields reduced ambiguities and improved resolution, even at low signal-to-noise ratios, when compared to those obtained via classical MFP approaches. An iterative solver based on block-coordinate descent is developed whose computational complexity per iteration is linear with respect to the number of locations considered for the SLM. Numerical tests illustrate the performance of the algorithm.

  19. Mid frequency shallow water fine-grained sediment attenuation measurements.

    PubMed

    Holland, Charles W; Dosso, Stan E

    2013-07-01

    Attenuation is perhaps the most difficult sediment acoustic property to measure, but arguably one of the most important for predicting passive and active sonar performance. Measurement techniques can be separated into "direct" measurements (e.g., via sediment probes, sediment cores, and laboratory studies on "ideal" sediments) which are typically at high frequencies, O(10(4)-10(5)) Hz, and "indirect" measurements where attenuation is inferred from long-range propagation or reflection data, generally O(10(2)-10(3)) Hz. A frequency gap in measurements exists in the 600-4000 Hz band and also a general acknowledgement that much of the historical measurements on fine-grained sediments have been biased due to a non-negligible silt and sand component. A shallow water measurement technique using long range reverberation is critically explored. An approximate solution derived using energy flux theory shows that the reverberation is very sensitive to depth-integrated attenuation in a fine-grained sediment layer and separable from most other unknown geoacoustic parameters. Simulation using Bayesian methods confirms the theory. Reverberation measurements across a 10 m fine-grained sediment layer yield an attenuation of 0.009 dB/m/kHz with 95% confidence bounds of 0.006-0.013 dB/m/kHz. This is among the lowest values for sediment attenuation reported in shallow water.

  20. Shallow water imaging sonar system for environmental surveying. Final report

    SciTech Connect

    1998-05-01

    The scope of this research is to develop a shallow water sonar system designed to detect and map the location of objects such as hazardous wastes or discarded ordnance in coastal waters. The system will use high frequency wide-bandwidth imaging sonar, mounted on a moving platform towed behind a boat, to detect and identify objects on the sea bottom. Resolved images can be obtained even if the targets are buried in an overlayer of silt. The specific technical objective of this research was to develop and test a prototype system that is capable of (1) scan at high speeds (up to 10m/s), even in shallow water (depth to ten meters), without motion blurring or loss of resolution; (2) produce images of the bottom structure that are detailed enough for unambiguous detection of objects as small as 15cm, even if they are buried up to 30cm deep in silt or sand. The critical technology involved uses an linear FM (LFM) or similar complex waveform, which has a high bandwidth for good range resolution, with a long pulse length for similar Dopper resolution. The lone duration signal deposits more energy on target than a narrower pulse, which increases the signal-to-noise ratio and signal-to-clutter ratio. This in turn allows the use of cheap, lightweight, low power, piezoelectric transducers at the 30--500 kHz range.

  1. Assessing Tsunami Vulnerabilities of Geographies with Shallow Water Equations

    NASA Technical Reports Server (NTRS)

    Aras, Rifat; Shen, Yuzhong

    2012-01-01

    Tsunami preparedness is crucial for saving human lives in case of disasters that involve massive water movement. In this work, we develop a framework for visual assessment of tsunami preparedness of geographies. Shallow water equations (also called Saint Venant equations) are a set of hyperbolic partial differential equations that are derived by depth-integrating the Navier-Stokes equations and provide a great abstraction of water masses that have lower depths compared to their free surface area. Our specific contribution in this study is to use Microsoft's XNA Game Studio to import underwater and shore line geographies, create different tsunami scenarios, and visualize the propagation of the waves and their impact on the shore line geography. Most importantly, we utilized the computational power of graphical processing units (GPUs) as HLSL based shader files and delegated all of the heavy computations to the GPU. Finally, we also conducted a validation study, in which we have tested our model against a controlled shallow water experiment. We believe that such a framework with an easy to use interface that is based on readily available software libraries, which are widely available and easily distributable, would encourage not only researchers, but also educators to showcase ideas.

  2. Shallow-water sparsity-cognizant source-location mapping.

    PubMed

    Forero, Pedro A; Baxley, Paul A

    2014-06-01

    Using passive sonar for underwater acoustic source localization in a shallow-water environment is challenging due to the complexities of underwater acoustic propagation. Matched-field processing (MFP) exploits both measured and model-predicted acoustic pressures to localize acoustic sources. However, the ambiguity surface obtained through MFP contains artifacts that limit its ability to reveal the location of the acoustic sources. This work introduces a robust scheme for shallow-water source localization that exploits the inherent sparse structure of the localization problem and the use of a model characterizing the acoustic propagation environment. To this end, the underwater acoustic source-localization problem is cast as a sparsity-inducing stochastic optimization problem that is robust to model mismatch. The resulting source-location map (SLM) yields reduced ambiguities and improved resolution, even at low signal-to-noise ratios, when compared to those obtained via classical MFP approaches. An iterative solver based on block-coordinate descent is developed whose computational complexity per iteration is linear with respect to the number of locations considered for the SLM. Numerical tests illustrate the performance of the algorithm. PMID:24907812

  3. Soluble, light-absorbing species in snow at Barrow, Alaska

    NASA Astrophysics Data System (ADS)

    Beine, Harry; Anastasio, Cort; Esposito, Giulio; Patten, Kelley; Wilkening, Elizabeth; Domine, Florent; Voisin, Didier; Barret, Manuel; Houdier, Stephan; Hall, Sam

    2011-07-01

    As part of the international multidisciplinary Ocean - Atmosphere - Sea Ice - Snowpack (OASIS) program we analyzed more than 500 terrestrial (melted) snow samples near Barrow, AK between February and April 2009 for light absorption, as well as H2O2 and inorganic anion concentrations. For light absorption in the photochemically active region (300-450 nm) of surface snows, H2O2 and NO3- make minor contributions (combined < 9% typically), while HUmic LIke Substances (HULIS) and unknown chromophores each account for approximately half of the total absorption. We have identified four main sources for our residual chromophores (i.e., species other than H2O2 or NO3-): (1) vegetation and organic debris impact mostly the lowest 20 cm of the snowpack, (2) marine inputs, which are identified by high Cl- and SO42- contents, (3) deposition of diamond dust to surface snow, and (4) gas-phase exchange between the atmosphere and surface snow layers. The snow surfaces, and accompanying chromophore concentrations, are strongly modulated by winds and snowfall at Barrow. However, even with these physical controls on light absorption, we see an overall decline of light absorption in near-surface snow during the 7 weeks of our campaign, likely due to photo-bleaching of chromophores. While HULIS and unknown chromophores dominate light absorption by soluble species in Barrow snow, we know little about the photochemistry of these species, and thus we as a community are probably overlooking many snowpack photochemical reactions.

  4. Serum antibody prevalence of malignant catarrhal fever viruses in seven wildlife species from Alaska.

    PubMed

    Zarnke, Randall L; Li, Hong; Crawford, Timothy B

    2002-07-01

    Blood samples were collected from seven species of free-ranging ungulates in Alaska. Sera were tested for evidence of exposure to malignant catarrhal fever viruses (MCFV) by means of a competitive enzyme-linked immunosorbent assay. Antibody prevalences were as follows: muskox (Ovibos moschatus) 100 positive samples of 104 tested (96%); Dall sheep (Ovis dalli) 212 of 222 (95%); elk (Cervus elaphus) 14 of 51 (27%); bison (Bison bison) 34 of 197 (17%); caribou (Rangifer tarandus) nine of 232 (4%); Sitka black-tailed deer (Odocoileus hemionus sitkensis) one of 49 (2%); and moose (Alces alces) three of 219 (1%). Antibody prevalence in a bison population from the Interior was stable over a 5 yr period. These results indicate that at least one virus in the MCF group is enzootic in Dall sheep and muskox in Alaska. Lower antibody prevalences in the other species in this survey suggest that MCFV are latent or subclinical in these free-ranging ruminants. Whole blood samples were collected from 14 Dall sheep and subjected to a polymerase chain reaction assay. Fragments of ovine herpesvirus-2 DNA were detected in six of the samples. The significance of these findings for the health of free-ranging ungulates in Alaska is unknown.

  5. Serum antibody prevalence of malignant catarrhal fever viruses in seven wildlife species from Alaska.

    PubMed

    Zarnke, Randall L; Li, Hong; Crawford, Timothy B

    2002-07-01

    Blood samples were collected from seven species of free-ranging ungulates in Alaska. Sera were tested for evidence of exposure to malignant catarrhal fever viruses (MCFV) by means of a competitive enzyme-linked immunosorbent assay. Antibody prevalences were as follows: muskox (Ovibos moschatus) 100 positive samples of 104 tested (96%); Dall sheep (Ovis dalli) 212 of 222 (95%); elk (Cervus elaphus) 14 of 51 (27%); bison (Bison bison) 34 of 197 (17%); caribou (Rangifer tarandus) nine of 232 (4%); Sitka black-tailed deer (Odocoileus hemionus sitkensis) one of 49 (2%); and moose (Alces alces) three of 219 (1%). Antibody prevalence in a bison population from the Interior was stable over a 5 yr period. These results indicate that at least one virus in the MCF group is enzootic in Dall sheep and muskox in Alaska. Lower antibody prevalences in the other species in this survey suggest that MCFV are latent or subclinical in these free-ranging ruminants. Whole blood samples were collected from 14 Dall sheep and subjected to a polymerase chain reaction assay. Fragments of ovine herpesvirus-2 DNA were detected in six of the samples. The significance of these findings for the health of free-ranging ungulates in Alaska is unknown. PMID:12238366

  6. Description of Caurinus tlagu, new species, from Prince of Wales Island, Alaska (Mecoptera, Boreidae, Caurininae)

    PubMed Central

    Sikes, Derek S.; Stockbridge, Jill

    2013-01-01

    Abstract A new species of the cryptic, minute, wingless, and enigmatic taxon Caurinus, and the second for the subfamily Caurininae,is described from Prince of Wales Island in the Alexander Archipelago, Alaska. It is distinguished from its only congener, Caurinus dectes Russell, 1979b, which occurs 1,059 km southeast in Oregon and Washington, based on external morphology and sequences of the mitochondrial gene cytochrome oxidase II. These two species are probably evolutionary relicts – the only known members of a clade dating to the Late Jurassic or older. PMID:23878513

  7. The Toarcian Oceanic Anoxic Event: a shallow-water perspective

    NASA Astrophysics Data System (ADS)

    Bodin, Stephane; Krencker, Francois-Nicolas; Kabiri, Lahcen; Immenhauser, Adrian

    2015-04-01

    The Toarcian ocean anoxic event (T-OAE, ca. 183 Ma) corresponds to a major perturbation of the carbon cycle as reflected by a marked decrease (2 to 7 per mil) in carbon-isotope ratios of various carbonate and organic matter phases. Severe environmental perturbations and biotic turnovers are accompanying the unfolding of the T-OAE, which is thought to be initiated by the activity of the Karoo-Ferrar large igneous province. Most of the studies dedicated to the T-OAE were however undertaken in mud-rich, deep-water setting, leaving vast uncertainties about its shallow-water expression and accompanying sea-level fluctuations. Here we present an extensive sedimentological dataset of the shallow-water record of the T-OAE within the Central High Atlas Basin of Morocco. The combination of ammonite and brachiopod biostratigraphy, together with carbon-isotope chemostratigraphy (on both carbonate and organic matter) allows a precise location of the T-OAE in the studied shallow-water sections. Thanks to well-exposed and thick successions, relative sea-level variations were reconstructed on a high-resolution scale, highlighting several important facts. Firstly, the T-OAE interval is preceded by a 50 meters-deep incised valley, observed within the uppermost Polymorphum ammonite zone. Similar observations have been reported from Euro-boreal basins and, together with published evidences of coeval occurrence of relatively cool seawater temperature and low atmospheric pCO2, we postulate that this forced regression is driven by glacio-eustasy. This points at the occurrence of a "cold snap" event just prior to the onset of the T-OAE. Secondly, the inception of the T-OAE is marked by the demise of the Lithiotid-dominated neritic carbonate factory, replaced by siliciclastic-dominated sedimentation during the T-OAE negative carbon isotope shift. Thirdly, an important progradation of oo-biodetritic shoal occurs during the negative carbon isotope plateau, underlying that the renewal of

  8. A spectral element shallow water model on spherical geodesic grids

    NASA Astrophysics Data System (ADS)

    Giraldo, Francis X.

    2001-04-01

    The spectral element method for the two-dimensional shallow water equations on the sphere is presented. The equations are written in conservation form and the domains are discretized using quadrilateral elements obtained from the generalized icosahedral grid introduced previously (Giraldo FX. Lagrange-Galerkin methods on spherical geodesic grids: the shallow water equations. Journal of Computational Physics 2000; 160: 336-368). The equations are written in Cartesian co-ordinates that introduce an additional momentum equation, but the pole singularities disappear. This paper represents a departure from previously published work on solving the shallow water equations on the sphere in that the equations are all written, discretized, and solved in three-dimensional Cartesian space. Because the equations are written in a three-dimensional Cartesian co-ordinate system, the algorithm simplifies into the integration of surface elements on the sphere from the fully three-dimensional equations. A mapping (Song Ch, Wolf JP. The scaled boundary finite element method - alias consistent infinitesimal finite element cell method - for diffusion. International Journal for Numerical Methods in Engineering 1999; 45: 1403-1431) which simplifies these computations is described and is shown to contain the Eulerian version of the method introduced previously by Giraldo (Journal of Computational Physics 2000; 160: 336-368) for the special case of triangular elements. The significance of this mapping is that although the equations are written in Cartesian co-ordinates, the mapping takes into account the curvature of the high-order spectral elements, thereby allowing the elements to lie entirely on the surface of the sphere. In addition, using this mapping simplifies all of the three-dimensional spectral-type finite element surface integrals because any of the typical two-dimensional planar finite element or spectral element basis functions found in any textbook (for example, Huebner et al

  9. Molecular phylogeny of the benthic shallow-water octopuses (Cephalopoda: Octopodinae).

    PubMed

    Guzik, Michelle T; Norman, Mark D; Crozier, Ross H

    2005-10-01

    Octopus has been regarded as a "catch all" genus, yet its monophyly is questionable and has been untested. We inferred a broad-scale phylogeny of the benthic shallow-water octopuses (subfamily Octopodinae) using amino acid sequences of two mitochondrial DNA genes: Cytochrome oxidase subunit III and Cytochrome b apoenzyme, and the nuclear DNA gene Elongation Factor-1alpha. Sequence data were obtained from 26 Octopus species and from four related genera. Maximum likelihood and Bayesian approaches were implemented to estimate the phylogeny, and non-parametric bootstrapping was used to verify confidence for Bayesian topologies. Phylogenetic relationships between closely related species were generally well resolved, and groups delineated, but the genes did not resolve deep divergences well. The phylogenies indicated strongly that Octopus is not monophyletic, but several monophyletic groups were identified within the genus. It is therefore clear that octopodid systematics requires major revision.

  10. Reverberation clutter induced by nonlinear internal waves in shallow water.

    PubMed

    Henyey, Frank S; Tang, Dajun

    2013-10-01

    Clutter is related to false alarms for active sonar. It is demonstrated that, in shallow water, target-like clutter in reverberation signals can be caused by nonlinear internal waves. A nonlinear internal wave is modeled using measured stratification on the New Jersey shelf. Reverberation in the presence of the internal wave is modeled numerically. Calculations show that acoustic energy propagating near a sound speed minimum is deflected as a high intensity, higher angle beam into the bottom, where it is backscattered along the reciprocal path. The interaction of sound with the internal wave is isolated in space, hence resulting in a target-like clutter, which is found to be greater than 10 dB above the mean reverberation level. PMID:24116532

  11. Development of Modular Shallow Water AUV: Issues & Trial Results

    NASA Astrophysics Data System (ADS)

    Shome, S. N.; Nandy, S.; Pal, D.; Das, S. K.; Vadali, S. R. K.; Basu, Jhankar; Ghosh, Sukamal

    2012-07-01

    In view of their operational ease, autonomous underwater vehicles (AUVs) find wide applications in different sub-sea operations, and the range encompasses bathymetry, seabed mapping, collection of marine data as well as strategic and commercial applications like underwater surveillance and reconnaissance, recovery and monitoring of submerged installations. A modular shallow water AUV having five degrees of freedom—christened AUV-150—has been designed and developed by CSIR-CMERI, Durgapur, India for operating up to a depth of 150 m. A fully functional AUV has been tested at various conditions in accordance to test protocols. This paper relates to the developmental issues, the hurdles faced during various phases of development of the AUV-150 and discusses the experimental results obtained during trials of the AUV in lake and sea.

  12. Reverberation clutter induced by nonlinear internal waves in shallow water.

    PubMed

    Henyey, Frank S; Tang, Dajun

    2013-10-01

    Clutter is related to false alarms for active sonar. It is demonstrated that, in shallow water, target-like clutter in reverberation signals can be caused by nonlinear internal waves. A nonlinear internal wave is modeled using measured stratification on the New Jersey shelf. Reverberation in the presence of the internal wave is modeled numerically. Calculations show that acoustic energy propagating near a sound speed minimum is deflected as a high intensity, higher angle beam into the bottom, where it is backscattered along the reciprocal path. The interaction of sound with the internal wave is isolated in space, hence resulting in a target-like clutter, which is found to be greater than 10 dB above the mean reverberation level.

  13. Modeling of SAR signatures of shallow water ocean topography

    NASA Technical Reports Server (NTRS)

    Shuchman, R. A.; Kozma, A.; Kasischke, E. S.; Lyzenga, D. R.

    1984-01-01

    A hydrodynamic/electromagnetic model was developed to explain and quantify the relationship between the SEASAT synthetic aperture radar (SAR) observed signatures and the bottom topography of the ocean in the English Channel region of the North Sea. The model uses environmental data and radar system parameters as inputs and predicts SAR-observed backscatter changes over topographic changes in the ocean floor. The model results compare favorably with the actual SEASAT SAR observed backscatter values. The developed model is valid for only relatively shallow water areas (i.e., less than 50 meters in depth) and suggests that for bottom features to be visible on SAR imagery, a moderate to high velocity current and a moderate wind must be present.

  14. On shallow water rogue wave formation in strongly inhomogeneous channels

    NASA Astrophysics Data System (ADS)

    Didenkulova, Ira; Pelinovsky, Efim

    2016-05-01

    Rogue wave formation in shallow water is often governed by dispersive focusing and wave-bottom interaction. In this study we try to combine these mechanisms by considering dispersive nonreflecting wave propagation in shallow strongly inhomogeneous channels. Nonreflecting wave propagation provides extreme wave amplification and the transfer of wave energy over large distances, while dispersive effects allow formation of a short-lived wave of extreme height (rogue wave). We found several types of water channels, where this mechanism can be realized, including (i) channels with a monotonically decreasing cross-section (normal dispersion), (ii) an inland basin described by a half of elliptic paraboloid (abnormal dispersion) and (iii) an underwater hill described by a half of hyperbolic paraboloid (normal dispersion). Conditions for variations of local frequency in the wave train providing optimal focusing of the wave train are also found.

  15. Shallow water rogue wave formation in inhomogeneous channels

    NASA Astrophysics Data System (ADS)

    Pelinovsky, Efim; Didenkulova, Ira

    2016-04-01

    Rogue wave formation in shallow water is often governed by dispersive focusing and wave-bottom interaction. In this study we try to combine these mechanisms by considering dispersive nonreflecting wave propagation in shallow strongly inhomogeneous channels. Nonreflecting wave propagation provides extreme wave amplification and transfer of wave energy over large distances, while dispersive effects allow formation of short-lived wave of extreme height (rogue wave). We found several types of water channels, where this mechanism can be realized, including (i) channels with monotonically decreasing cross-section (normal dispersion), (ii) inland basin described by a half of elliptic paraboloid (abnormal dispersion) and (iii) underwater hill described by a half of hyperbolic paraboloid (normal dispersion). Conditions for variations of local frequency in the wave trail providing optimal focusing of the wave train are also found.

  16. Modelo ``Shallow Water'' de dínamo solar

    NASA Astrophysics Data System (ADS)

    Lillo, R. R.; Mininni, P. D.; Gómez, D. O.

    Magnetic fields in stars are believed to be generated by the dynamo effect and are closely related with their differential rotation. Recent observations of the sun reveal that the rotation has a strong shear in a thin layer located at the bottom of the convective region. This observational evidence leads to the magnetohydrodynamic extension of the shallow water model. We use a mean field approximation to obtain the conditions for the growth of magnetic energy. The validity of our approximation is confirmed via numerical simulations. The evolution of an initially weak and small scale magnetic field is numerically studied for a system maintained in a stationary regime of hydrodynamic turbulence by a stirring force at a macroscopic scale.

  17. Tree Species Linked to Large Differences in Ecosystem Carbon Distribution in the Boreal Forest of Alaska

    NASA Astrophysics Data System (ADS)

    Melvin, A. M.; Mack, M. C.; Johnstone, J. F.; Schuur, E. A. G.; Genet, H.; McGuire, A. D.

    2014-12-01

    In the boreal forest of Alaska, increased fire severity associated with climate change is altering plant-soil-microbial feedbacks and ecosystem carbon (C) dynamics. The boreal landscape has historically been dominated by black spruce (Picea mariana), a tree species associated with slow C turnover and large soil organic matter (SOM) accumulation. Historically, low severity fires have led to black spruce regeneration post-fire, thereby maintaining slow C cycling rates and large SOM pools. In recent decades however, an increase in high severity fires has led to greater consumption of the soil organic layer (SOL) during fire and subsequent establishment of deciduous tree species in areas previously dominated by black spruce. This shift to a more deciduous dominated landscape has many implications for ecosystem structure and function, as well as feedbacks to global C cycling. To improve our understanding of how boreal tree species affect C cycling, we quantified above- and belowground C stocks and fluxes in adjacent, mid-successional stands of black spruce and Alaska paper birch (Betula neoalaskana) that established following a 1958 fire near Fairbanks, Alaska. Although total ecosystem C pools (aboveground live tree biomass + dead wood + SOL + top 10 cm of mineral soil) were similar for the two stand types, the distribution of C among pools was markedly different. In black spruce, 78% of measured C was found in soil pools, primarily in the SOL, where spruce contained twice the C stored in paper birch (4.8 ± 0.3 vs. 2.4 ± 0.1 kg C m-2). In contrast, aboveground biomass dominated ecosystem C pools in birch forest (6.0 ± 0.3 vs. 2.5 ± 0.2 kg C m-2 in birch and spruce, respectively). Our findings suggest that tree species exert a strong influence over plant-soil-microbial feedbacks and may have long-term effects on ecosystem C sequestration and storage that feedback to the climate system.

  18. New species of sponges (Porifera, Demospongiae) from the Aleutian Islands and Gulf of Alaska.

    PubMed

    Lehnert, Helmut; Stone, Robert P

    2015-10-27

    Ten new species of demosponges, assigned to the orders Poecilosclerida, Axinellida and Dictyoceratida, discovered in the Gulf of Alaska and along the Aleutian Island Archipelago are described and compared to relevant congeners. Poecilosclerida include Cornulum globosum n. sp., Megaciella lobata n. sp., M. triangulata n. sp., Artemisina clavata n. sp., A. flabellata n. sp., Coelosphaera (Histodermion) kigushimkada n. sp., Stelodoryx mucosa n. sp. and S. siphofuscus n. sp. Axinellida is represented by Raspailia (Hymeraphiopsis) fruticosa n. sp. and Dictyoceratida is represented by Dysidea kenkriegeri n. sp. The genus Cornulum is modified to allow for smooth tylotes. We report several noteworthy biogeographical observations. We describe only the third species within the subgenus Histodermion and the first from the Indo-Pacific Region. Additionally, the subgenus Hymerhaphiopsis was previously represented by only a single species from Antarctica. We also report the first record of a dictyoceratid species from Alaska. The new collections further highlight the richness of the sponge fauna from the region, particularly for the Poecilosclerida.

  19. New species of sponges (Porifera, Demospongiae) from the Aleutian Islands and Gulf of Alaska.

    PubMed

    Lehnert, Helmut; Stone, Robert P

    2015-01-01

    Ten new species of demosponges, assigned to the orders Poecilosclerida, Axinellida and Dictyoceratida, discovered in the Gulf of Alaska and along the Aleutian Island Archipelago are described and compared to relevant congeners. Poecilosclerida include Cornulum globosum n. sp., Megaciella lobata n. sp., M. triangulata n. sp., Artemisina clavata n. sp., A. flabellata n. sp., Coelosphaera (Histodermion) kigushimkada n. sp., Stelodoryx mucosa n. sp. and S. siphofuscus n. sp. Axinellida is represented by Raspailia (Hymeraphiopsis) fruticosa n. sp. and Dictyoceratida is represented by Dysidea kenkriegeri n. sp. The genus Cornulum is modified to allow for smooth tylotes. We report several noteworthy biogeographical observations. We describe only the third species within the subgenus Histodermion and the first from the Indo-Pacific Region. Additionally, the subgenus Hymerhaphiopsis was previously represented by only a single species from Antarctica. We also report the first record of a dictyoceratid species from Alaska. The new collections further highlight the richness of the sponge fauna from the region, particularly for the Poecilosclerida. PMID:26624419

  20. Shallow water (paddling) variants of water maze tests in mice.

    PubMed

    Deacon, Robert M J

    2013-01-01

    When Richard Morris devised his water maze in 1981(7), most behavioral work was done in rats. However, the greater understanding of mouse genetics led to the mouse becoming increasingly important. But researchers found that some strains of mutant mice were prone to problems like passively floating or diving when they were tested in the Morris water maze(11). This was unsurprising considering their natural habitat; rats swim naturally (classically, the "sewer rat"), whereas mice evolved in the dry areas of central Asia. To overcome these problems, it was considered whether shallow water would be a sufficient stimulus to provide escape motivation for mice. This would also avoid the problems of drying the small creatures with a towel and then putting them in a heated recovery chamber to avoid hypothermia, which is a much more serious problem than with rats; the large ratio of surface area to volume of a mouse makes it particularly vulnerable to rapid heat loss. Another consideration was whether a more natural escape strategy could be used, to facilitate learning. Since animals that fall into water and swim away from the safety of the shore are unlikely to pass on their genes, animals have evolved a natural tendency to swim to the edge of a body of water. The Morris water maze, however, requires them to swim to a hidden platform towards the center of the maze - exactly opposite to their evolved behavior. Therefore the paddling maze should incorporate escape to the edge of the apparatus. This feature, coupled with the use of relatively non-aversive shallow water, embodies the "Refinement" aspect of the "3 Rs" of Russell and Burch(8). Various types of maze design were tried; the common feature was that the water was always shallow (2 cm deep) and escape was via a tube piercing the transparent wall of the apparatus. Other tubes ("false exits") were also placed around the walls but these were blocked off. From the inside of the maze all false exits and the single true exit

  1. Broadband sound propagation in shallow water and geoacoustic inversion.

    PubMed

    Knobles, D P; Koch, R A; Thompson, L A; Focke, K C; Eisman, P E

    2003-01-01

    Part of an experiment to test a measurement package in a shallow water region in the Gulf of Mexico was designed to gather broadband acoustic data suitable for inversion to estimate seabed geoacoustic parameters. Continuous wave tow acoustic signals at multiple frequencies and broadband impulsive source signals were recorded on a horizontal line array in a high-noise environment. Simulated annealing with a normal mode forward propagation model is utilized to invert for a geoacoustic representation of the seabed. Several inversions are made from different data samples of two light bulb implosions, the measured sound speed profiles at the HLA and at the positions of the light bulb deployments, and for two different cost functions. The different cost functions, measured sound speed profiles, and measured time series result in different inverted geoacoustic profiles from which transmission loss is generated for comparison with measurements. On the basis of physical consistency and from the comparison of the transmission loss and time series, a best estimate geoacoustic profile is selected and compared to those obtained from previously reported inversions. Uncertainties in the sound speed profile are shown to affect the uncertainties of the estimated seabed parameters.

  2. Spectral fatigue analysis of shallow water jacket platforms

    SciTech Connect

    Bishop, N.W.M.; Feng, Q.; Schofield, P.; Kirkwood, M.G.; Turner, T.

    1996-08-01

    The spectral analysis approach is a very elegant and computationally efficient method of analyzing the fatigue life of offshore jacket platforms. The primary limitation of the approach is that it assumes linearity of both the structural system and the wave-loading mechanism. The approach is now widely used for the analysis of deepwater, dynamically responsive platforms where nonlinearities are usually not serious. There are also advantages associated with using the approach for shallow water platforms although nonlinearities then become significant, particularly the wave-loading mechanism. In order to verify the new approach, a time series analysis, including wave-loading nonlinearities, has been adopted to obtain a reference fatigue life. The sea surface elevation spectrum has been decomposed into a set of equivalent harmonic components. The water particle velocities and accelerations were then individually evaluated and the appropriate (Morison`s) wave loading was computed for each time step in the sea surface time history. The structural stress response time history was then calculated, from which a fatigue life estimate was obtained. This paper presents the results obtained using this new approach, as well as comparative results obtained using the deterministic, spectral, and time domain approaches applied with a representative sea state. The results show that the deterministic-spectral method has a considerable amount of potential, especially for new design work where weight savings and/or increased confidence levels may be achieved.

  3. Nonlinear wave interactions in shallow water magnetohydrodynamics of astrophysical plasma

    NASA Astrophysics Data System (ADS)

    Klimachkov, D. A.; Petrosyan, A. S.

    2016-05-01

    The rotating magnetohydrodynamic flows of a thin layer of astrophysical and space plasmas with a free surface in a vertical external magnetic field are considered in the shallow water approximation. The presence of a vertical external magnetic field changes significantly the dynamics of wave processes in an astrophysical plasma, in contrast to a neutral fluid and a plasma layer in an external toroidal magnetic field. There are three-wave nonlinear interactions in the case under consideration. Using the asymptotic method of multiscale expansions, we have derived nonlinear equations for the interaction of wave packets: three magneto- Poincare waves, three magnetostrophic waves, two magneto-Poincare and one magnetostrophic waves, and two magnetostrophic and one magneto-Poincare waves. The existence of decay instabilities and parametric amplification is predicted. We show that a magneto-Poincare wave decays into two magneto-Poincare waves, a magnetostrophic wave decays into two magnetostrophic waves, a magneto-Poincare wave decays into one magneto-Poincare and one magnetostrophic waves, and a magnetostrophic wave decays into one magnetostrophic and one magneto-Poincare waves. There are the following parametric amplification mechanisms: the parametric amplification of magneto-Poincare waves, the parametric amplification of magnetostrophic waves, the amplification of a magneto-Poincare wave in the field of a magnetostrophic wave, and the amplification of a magnetostrophic wave in the field of a magneto-Poincare wave. The instability growth rates and parametric amplification factors have been found for the corresponding processes.

  4. A new Shallow Water Cabled OBS System off California

    NASA Astrophysics Data System (ADS)

    Rademacher, Horst; Pearcey, Chris; Mangano, Giorgio; Guralp, Cansun; Pearce, Nathan

    2014-05-01

    During the summer and fall of 2013 we installed a turnkey cabled network of four combination broadband velocity/acceleration ocean bottom sensors (OBS) on the sea floor near Point Buchon in the Northeastern Pacific Ocean off the coast of Central California. We implemented a novel network design by daisy-chaining the instruments to one single multistranded cable. The signals of each station are digitized in-situ and then transmitted via dedicated optical fiber links inside the cable to a shore station. From there they are fed in real time via a cell phone modem into several seismic networks in California. The goal of this dense network is to monitor the microseismicity of two offshore faults running parallel to the strike of the San Andreas Fault. However, because the network is installed in rather shallow water near the coast, the action of waves and swell at the sea surface affect the sensor registrations much stronger as compared to the typical deep water installation of OBS equipment. We will report about the challenges of installing and maintaining the network and present some initial results.

  5. Soliton turbulence in shallow water ocean surface waves.

    PubMed

    Costa, Andrea; Osborne, Alfred R; Resio, Donald T; Alessio, Silvia; Chrivì, Elisabetta; Saggese, Enrica; Bellomo, Katinka; Long, Chuck E

    2014-09-01

    We analyze shallow water wind waves in Currituck Sound, North Carolina and experimentally confirm, for the first time, the presence of soliton turbulence in ocean waves. Soliton turbulence is an exotic form of nonlinear wave motion where low frequency energy may also be viewed as a dense soliton gas, described theoretically by the soliton limit of the Korteweg-deVries equation, a completely integrable soliton system: Hence the phrase "soliton turbulence" is synonymous with "integrable soliton turbulence." For periodic-quasiperiodic boundary conditions the ergodic solutions of Korteweg-deVries are exactly solvable by finite gap theory (FGT), the basis of our data analysis. We find that large amplitude measured wave trains near the energetic peak of a storm have low frequency power spectra that behave as ∼ω-1. We use the linear Fourier transform to estimate this power law from the power spectrum and to filter densely packed soliton wave trains from the data. We apply FGT to determine the soliton spectrum and find that the low frequency ∼ω-1 region is soliton dominated. The solitons have random FGT phases, a soliton random phase approximation, which supports our interpretation of the data as soliton turbulence. From the probability density of the solitons we are able to demonstrate that the solitons are dense in time and highly non-Gaussian.

  6. Conservation laws and LETKF with 2D Shallow Water Model

    NASA Astrophysics Data System (ADS)

    Zeng, Yuefei; Janjic, Tijana

    2016-04-01

    Numerous approaches have been proposed to maintain physical conservation laws in the numerical weather prediction models. However, to achieve a reliable prediction, adequate initial conditions are also necessary, which are produced by a data assimilation algorithm. If an ensemble Kalman filters (EnKF) is used for this purpose, it has been shown that it could yield unphysical analysis ensemble that for example violates principles of mass conservation and positivity preservation (e.g. Janjic et al 2014) . In this presentation, we discuss the selection of conservation criteria for the analysis step, and start with testing the conservation of mass, energy and enstrophy. The simple experiments deal with nonlinear shallow water equations and simulated observations that are assimilated with LETKF (Localized Ensemble Transform Kalman Filter, Hunt et al. 2007). The model is discretized in a specific way to conserve mass, angular momentum, energy and enstrophy. The effects of the data assimilation on the conserved quantities (of mass, energy and enstrophy) depend on observation covarage, localization radius, observed variable and observation operator. Having in mind that Arakawa (1966) and Arakawa and Lamb (1977) showed that the conservation of both kinetic energy and enstrophy by momentum advection schemes in the case of nondivergent flow prevents systematic and unrealistic energy cascade towards high wave numbers, a cause of excessive numerical noise and possible eventual nonlinear instability, we test the effects on prediction depending on the type of errors in the initial condition. The performance with respect to nonlinear energy cascade is assessed as well.

  7. Global Shallow-Water Bathymetry From Satellite Ocean Color Data

    NASA Astrophysics Data System (ADS)

    Lee, ZhongPing; Hu, Chuanmin; Casey, Brandon; Shang, Shaoling; Dierssen, Heidi; Arnone, Robert

    2010-11-01

    Knowledge of ocean bathymetry is important, not only for navigation but also for scientific studies of the ocean's volume, ecology, and circulation, all of which are related to Earth's climate. In coastal regions, moreover, detailed bathymetric maps are critical for storm surge modeling, marine power plant planning, understanding of ecosystem connectivity, coastal management, and change analyses. Because ocean areas are enormously large and ship surveys have limited coverage, adequate bathymetric data are still lacking throughout the global ocean. Satellite altimetry can produce reasonable estimates of bathymetry for the deep ocean [Sandwell et al., 2003, 2006], but the spatial resolution is very coarse (˜6-9 kilometers) and can be highly inaccurate in shallow waters, where gravitational effects are small. For example, depths retrieved from the widely used ETOPO2 bathymetry database (the National Geophysical Data Center's 2­minute global relief data; http://www.ngdc.noaa.gov/mgg/fliers/01mgg04.html) for the Great Bahama Bank (Figure 1a) are seriously in error when compared with ship surveys [Dierssen et al., 2009] (see Figure 1b). No statistical correlation was found between the two bathymetry measurements, and the root-mean-square error of ETOPO2 bathymetry was as high as 208 meters. Yet determining a higher-spatial-resolution (e.g., 300-meter) bathymetry of this region with ship surveys would require about 4 years of nonstop effort.

  8. Ecological succession of a Jurassic shallow-water ichthyosaur fall

    PubMed Central

    Danise, Silvia; Twitchett, Richard J.; Matts, Katie

    2014-01-01

    After the discovery of whale fall communities in modern oceans, it has been hypothesized that during the Mesozoic the carcasses of marine reptiles created similar habitats supporting long-lived and specialized animal communities. Here, we report a fully documented ichthyosaur fall community, from a Late Jurassic shelf setting, and reconstruct the ecological succession of its micro- and macrofauna. The early ‘mobile-scavenger’ and ‘enrichment-opportunist’ stages were not succeeded by a ‘sulphophilic stage’ characterized by chemosynthetic molluscs, but instead the bones were colonized by microbial mats that attracted echinoids and other mat-grazing invertebrates. Abundant cemented suspension feeders indicate a well-developed ‘reef stage’ with prolonged exposure and colonization of the bones prior to final burial, unlike in modern whale falls where organisms such as the ubiquitous bone-eating worm Osedax rapidly destroy the skeleton. Shallow-water ichthyosaur falls thus fulfilled similar ecological roles to shallow whale falls, and did not support specialized chemosynthetic communities. PMID:25205249

  9. Detection in shallow water using broadband-DORT

    NASA Astrophysics Data System (ADS)

    Fromm, David M.; Gaumond, Charles F.; Lingevitch, Joseph F.; Gauss, Roger C.; Menis, Richard

    2003-10-01

    The decomposition of the time-reversal operator (DORT) [Prada et al., J. Acoust. Soc. Am. 99, 2067-2076 (1996)] has been extended into a coherent, broadband method. Broadband DORT has also been shown to isolate resolvable scatterers at various depths and ranges in a bistatic, active sonar in shallow water. Results are shown from the application of DORT to sea data taken in an area south of Hudson Canyon off the New Jersey coast during Geoclutter II. The vertical source/receiver array with 56 hydrophones spanning the water column was operated between 3.0 and 3.5 kHz. The elements were divided into four groups, with each group acting as a coherent, broadside source. Two methods were used for exciting the separate channels. One method was the use of subsequent LFMs and the other was the use of simultaneous transmission of four pseudorandom-noise signals. The target was a midwater column echo-repeater. Results are compared with modeling based on in situ environmental measurements during the experiment. [The authors acknowledge signal-processing expertise from Dr. Ning Xiang, University of Mississippi, and ENS Alan Meyer, LLNL, support from Dr. Jeff Simmen, ONR, and assistance from Dr. Charles Holland, ARL/PSU. Work supported by ONR.

  10. High Resolution Marine Magnetic Survey of Shallow Water Littoral Area

    PubMed Central

    Ginzburg, Boris; Cohen, Tsuriel Ram; Zafrir, Hovav; Alimi, Roger; Salomonski, Nizan; Sharvit, Jacob

    2007-01-01

    The purpose of this paper is to present a system developed for detection and accurate mapping of ferro-metallic objects buried below the seabed in shallow waters. The system comprises a precise magnetic gradiometer and navigation subsystem, both installed on a non-magnetic catamaran towed by a low-magnetic interfering boat. In addition we present the results of a marine survey of a near-shore area in the vicinity of Atlit, a town situated on the Mediterranean coast of Israel, about 15 km south of Haifa. The primary purpose of the survey was to search for a Harvard airplane that crashed into the sea in 1960. A magnetic map of the survey area (3.5 km2 on a 0.5 m grid) was created revealing the anomalies at sub-meter accuracy. For each investigated target location a corresponding ferro-metallic item was dug out, one of which turned to be very similar to a part of the crashed airplane. The accuracy of location was confirmed by matching the position of the actual dug artifacts with the magnetic map within a range of ± 1 m, in a water depth of 9 m.

  11. Broadband sound propagation in shallow water and geoacoustic inversion

    NASA Astrophysics Data System (ADS)

    Knobles, D. P.; Koch, R. A.; Thompson, L. A.; Focke, K. C.; Eisman, P. E.

    2003-01-01

    Part of an experiment to test a measurement package in a shallow water region in the Gulf of Mexico was designed to gather broadband acoustic data suitable for inversion to estimate seabed geoacoustic parameters. Continuous wave tow acoustic signals at multiple frequencies and broadband impulsive source signals were recorded on a horizontal line array in a high-noise environment. Simulated annealing with a normal mode forward propagation model is utilized to invert for a geoacoustic representation of the seabed. Several inversions are made from different data samples of two light bulb implosions, the measured sound speed profiles at the HLA and at the positions of the light bulb deployments, and for two different cost functions. The different cost functions, measured sound speed profiles, and measured time series result in different inverted geoacoustic profiles from which transmission loss is generated for comparison with measurements. On the basis of physical consistency and from the comparison of the transmission loss and time series, a best estimate geoacoustic profile is selected and compared to those obtained from previously reported inversions. Uncertainties in the sound speed profile are shown to affect the uncertainties of the estimated seabed parameters.

  12. Progress in the development of shallow-water mapping systems

    USGS Publications Warehouse

    Bergeron, E.; Worley, C.R.; O'Brien, T.

    2007-01-01

    The USGS (US Geological Survey) Coastal and Marine Geology has deployed an advance autonomous shallow-draft robotic vehicle, Iris, for shallow-water mapping in Apalachicola Bay, Florida. The vehicle incorporates a side scan sonar system, seismic-reflection profiler, single-beam echosounder, and global positioning system (GPS) navigation. It is equipped with an onboard microprocessor-based motor controller, delivering signals for speed and steering to hull-mounted brushless direct-current thrusters. An onboard motion sensor in the Sea Robotics vehicle control system enclosure has been integrated in the vehicle to measure the vehicle heave, pitch, roll, and heading. Three water-tight enclosures are mounted along the vehicle axis for the Edgetech computer and electronics system including the Sea Robotics computer, a control and wireless communications system, and a Thales ZXW real-time kinematic (RTK) GPS receiver. The vehicle has resulted in producing high-quality seismic reflection and side scan sonar data, which will help in developing the baseline oyster habitat maps.

  13. Modeling rapid mass movements using the shallow water equations

    NASA Astrophysics Data System (ADS)

    Hergarten, S.; Robl, J.

    2014-11-01

    We propose a new method to model rapid mass movements on complex topography using the shallow water equations in Cartesian coordinates. These equations are the widely used standard approximation for the flow of water in rivers and shallow lakes, but the main prerequisite for their application - an almost horizontal fluid table - is in general not satisfied for avalanches and debris flows in steep terrain. Therefore, we have developed appropriate correction terms for large topographic gradients. In this study we present the mathematical formulation of these correction terms and their implementation in the open source flow solver GERRIS. This novel approach is evaluated by simulating avalanches on synthetic and finally natural topographies and the widely used Voellmy flow resistance law. The results are tested against analytical solutions and the commercial avalanche model RAMMS. The overall results are in excellent agreement with the reference system RAMMS, and the deviations between the different models are far below the uncertainties in the determination of the relevant fluid parameters and involved avalanche volumes in reality. As this code is freely available and open source, it can be easily extended by additional fluid models or source areas, making this model suitable for simulating several types of rapid mass movements. It therefore provides a valuable tool assisting regional scale natural hazard studies.

  14. Shallow water waves generated by subaerial solid landslides

    NASA Astrophysics Data System (ADS)

    Viroulet, S.; Cébron, D.; Kimmoun, O.; Kharif, C.

    2013-05-01

    Subaerial landslides are common events, which may generate very large water waves. The numerical modelling and simulation of these events are thus of primary interest for forecasting and mitigation of tsunami disasters. In this paper, we aim at describing these extreme events using a simplified shallow water model to derive relevant scaling laws. To cope with the problem, two different numerical codes are employed: one, SPHysics, is based on a Lagrangian meshless approach to accurately describe the impact stage whereas the other, Gerris, based on a two-phase finite-volume method is used to study the propagation of the wave. To validate Gerris for this very particular problem, two numerical cases of the literature are reproduced: a vertical sinking box and a 2-D wedge sliding down a slope. Then, to get insights into the problem of subaerial landslide-generated tsunamis and to further validate the codes for this case of landslides, a series of experiments is conducted in a water wave tank and successfully compared with the results of both codes. Based on a simplified approach, we derive different scaling laws in excellent agreement with the experiments and numerical simulations.

  15. Soliton Turbulence in Shallow Water Ocean Surface Waves

    NASA Astrophysics Data System (ADS)

    Costa, Andrea; Osborne, Alfred R.; Resio, Donald T.; Alessio, Silvia; Chrivı, Elisabetta; Saggese, Enrica; Bellomo, Katinka; Long, Chuck E.

    2014-09-01

    We analyze shallow water wind waves in Currituck Sound, North Carolina and experimentally confirm, for the first time, the presence of soliton turbulence in ocean waves. Soliton turbulence is an exotic form of nonlinear wave motion where low frequency energy may also be viewed as a dense soliton gas, described theoretically by the soliton limit of the Korteweg-deVries equation, a completely integrable soliton system: Hence the phrase "soliton turbulence" is synonymous with "integrable soliton turbulence." For periodic-quasiperiodic boundary conditions the ergodic solutions of Korteweg-deVries are exactly solvable by finite gap theory (FGT), the basis of our data analysis. We find that large amplitude measured wave trains near the energetic peak of a storm have low frequency power spectra that behave as ˜ω-1. We use the linear Fourier transform to estimate this power law from the power spectrum and to filter densely packed soliton wave trains from the data. We apply FGT to determine the soliton spectrum and find that the low frequency ˜ω-1 region is soliton dominated. The solitons have random FGT phases, a soliton random phase approximation, which supports our interpretation of the data as soliton turbulence. From the probability density of the solitons we are able to demonstrate that the solitons are dense in time and highly non-Gaussian.

  16. Multipath pulse shapes in shallow water: theory and simulation.

    PubMed

    Harrison, Chris H; Nielsen, Peter L

    2007-03-01

    In shallow water propagation the steeper ray angles are weakened most by boundary losses. Regarding the sound intensity as a continuous function of angle it can be converted into a function of travel time to reveal the multipath pulse shape received from a remote source (one-way path) or a target (two-way path). The closed-form isovelocity pulse shape is extended here to the case of upward or downward refraction. The envelope of the earliest arrivals is roughly trapezoidal with a delayed peak corresponding to the slowest, near horizontal refracted paths. The tail of the pulse falls off exponentially (linearly in decibels) with a decay constant that depends only on the bottom reflection properties and water depth, irrespective of travel time, a useful property for geoacoustic inversion and for sonar design. The nontrivial analytical problem of inverting explicit functions of angle into explicit functions of time is solved by numerical interpolation. Thus exact solutions can be calculated numerically. Explicit closed-form approximations are given for one-way paths. Two-way paths are calculated by numerical convolution. Using the wave model C-SNAP in several broadband cases of interest it is demonstrated that these solutions correspond roughly to a depth average of multipath arrivals.

  17. Soliton turbulence in shallow water ocean surface waves.

    PubMed

    Costa, Andrea; Osborne, Alfred R; Resio, Donald T; Alessio, Silvia; Chrivì, Elisabetta; Saggese, Enrica; Bellomo, Katinka; Long, Chuck E

    2014-09-01

    We analyze shallow water wind waves in Currituck Sound, North Carolina and experimentally confirm, for the first time, the presence of soliton turbulence in ocean waves. Soliton turbulence is an exotic form of nonlinear wave motion where low frequency energy may also be viewed as a dense soliton gas, described theoretically by the soliton limit of the Korteweg-deVries equation, a completely integrable soliton system: Hence the phrase "soliton turbulence" is synonymous with "integrable soliton turbulence." For periodic-quasiperiodic boundary conditions the ergodic solutions of Korteweg-deVries are exactly solvable by finite gap theory (FGT), the basis of our data analysis. We find that large amplitude measured wave trains near the energetic peak of a storm have low frequency power spectra that behave as ∼ω-1. We use the linear Fourier transform to estimate this power law from the power spectrum and to filter densely packed soliton wave trains from the data. We apply FGT to determine the soliton spectrum and find that the low frequency ∼ω-1 region is soliton dominated. The solitons have random FGT phases, a soliton random phase approximation, which supports our interpretation of the data as soliton turbulence. From the probability density of the solitons we are able to demonstrate that the solitons are dense in time and highly non-Gaussian. PMID:25238388

  18. Coherence of acoustic modes propagating through shallow water internal waves

    NASA Astrophysics Data System (ADS)

    Rouseff, Daniel; Turgut, Altan; Wolf, Stephen N.; Finette, Steve; Orr, Marshall H.; Pasewark, Bruce H.; Apel, John R.; Badiey, Mohsen; Chiu, Ching-Sang; Headrick, Robert H.; Lynch, James F.; Kemp, John N.; Newhall, Arthur E.; von der Heydt, Keith; Tielbuerger, Dirk

    2002-04-01

    The 1995 Shallow Water Acoustics in a Random Medium (SWARM) experiment [Apel et al., IEEE J. Ocean. Eng. 22, 445-464 (1997)] was conducted off the New Jersey coast. The experiment featured two well-populated vertical receiving arrays, which permitted the measured acoustic field to be decomposed into its normal modes. The decomposition was repeated for successive transmissions allowing the amplitude of each mode to be tracked. The modal amplitudes were observed to decorrelate with time scales on the order of 100 s [Headrick et al., J. Acoust. Soc. Am. 107(1), 201-220 (2000)]. In the present work, a theoretical model is proposed to explain the observed decorrelation. Packets of intense internal waves are modeled as coherent structures moving along the acoustic propagation path without changing shape. The packets cause mode coupling and their motion results in a changing acoustic interference pattern. The model is consistent with the rapid decorrelation observed in SWARM. The model also predicts the observed partial recorrelation of the field at longer time scales. The model is first tested in simple continuous-wave simulations using canonical representations for the internal waves. More detailed time-domain simulations are presented mimicking the situation in SWARM. Modeling results are compared to experimental data.

  19. The Post-Glacial Species Velocity of Picea glauca following the Last Glacial Maximum in Alaska.

    NASA Astrophysics Data System (ADS)

    Morrison, B. D.; Napier, J.; Kelly, R.; Li, B.; Heath, K.; Hug, B.; Hu, F.; Greenberg, J. A.

    2015-12-01

    Anthropogenic climate change is leading to dramatic fluctuations to Earth's biodiversity that has not been observed since past interglacial periods. There is rising concern that Earth's warming climate will have significant impacts to current species ranges and the ability of a species to persist in a rapidly changing environment. The paleorecord provides information on past species distributions in relation to climate change, which can illuminate the patterns of potential future distributions of species. Particularly in areas where there are multiple potential limiting factors on a species' range, e.g. temperature, radiation, and evaporative demand, the spatial patterns of species migrations may be particularly complex. In this study, we assessed the change in the distributions of white spruce (Picea glauca) from the Last Glacial Maxima (LGM) to present-day for the entire state of Alaska. To accomplish this, we created species distribution models (SDMs) calibrated from modern vegetation data and high-resolution, downscaled climate surfaces at 60m. These SDMs were applied to downscaled modern and paleoclimate surfaces to produce estimated ranges of white spruce during the LGM and today. From this, we assessed the "species velocity", the rate at which white spruce would need to migrate to keep pace with climate change, with the goal of determining whether the expansion from the LGM to today originated from microclimate refugia. Higher species velocities indicate locations where climate changed drastically and white spruce would have needed to migrate rapidly to persist and avoid local extinction. Conversely, lower species velocities indicated locations where the local climate was changing less rapidly or was within the center of the range of white spruce, and indicated locations where white spruce distributions were unlikely to have changed significantly. Our results indicate the importance of topographic complexity in buffering the effects of climate change

  20. Estimation of avian population sizes and species richness across a boreal landscape in Alaska

    USGS Publications Warehouse

    Handel, C.M.; Swanson, S.A.; Nigro, Debora A.; Matsuoka, S.M.

    2009-01-01

    We studied the distribution of birds breeding within five ecological landforms in Yukon-Charley Rivers National Preserve, a 10,194-km2 roadless conservation unit on the Alaska-Canada border in the boreal forest zone. Passerines dominated the avifauna numerically, comprising 97% of individuals surveyed but less than half of the 115 species recorded in the Preserve. We used distance-sampling and discrete-removal models to estimate detection probabilities, densities, and population sizes across the Preserve for 23 species of migrant passerines and five species of resident passerines. Yellow-rumped Warblers (Dendroica coronata) and Dark-eyed Juncos (Junco hyemalis) were the most abundant species, together accounting for 41% of the migrant passerine populations estimated. White-winged Crossbills (Loxia leucoptera), Boreal Chickadees (Poecile hudsonica), and Gray Jays (Perisoreus canadensis) were the most abundant residents. Species richness was greatest in the Floodplain/Terrace landform flanking the Yukon River but densities were highest in the Subalpine landform. Species composition was related to past glacial history and current physiography of the region and differed notably from other areas of the northwestern boreal forest. Point-transect surveys, augmented with auxiliary observations, were well suited to sampling the largely passerine avifauna across this rugged landscape and could be used across the boreal forest region to monitor changes in northern bird distribution and abundance. ?? 2009 The Wilson Ornithological Society.

  1. Improvement of sediment transport models using the shallow water framework

    NASA Astrophysics Data System (ADS)

    Morales de Luna, Tomás; Castro Diaz, Manuel J.; Fernandez Nieto, Enrique D.; Narbona Reina, Gladys

    2016-04-01

    Sediment can be transported in several ways by the action of a river. During low transport stages, particles move by sliding and rolling over the surface of the bed. This type of transport is usually called bedload transport. With the increase of the velocity, the sediment is entrained into suspension and travels significant distances before being deposed again. One can observe a continuous exchange between sediment at the riverbed and sediment in suspension. One possible approach to model these phenomena is to use a shallow water model coupled with transport equations for sediment in suspension and a morphodynamical component for the bedload transport, which depends on an empirical flux. Nevertheless, this approach presents some drawbacks, for instance, the vertical distribution of the sediment in suspension is lost, gravitational effects for bedload transport is neglected and the models are usually too simplified for practical situations. We present here some recent advances in sediment transport modeling that aim to overcome the difficulties present in classic models. In particular, for suspended transport, a multilayer approach results as a promising tool. This allows to keep track of the vertical distribution of sediment and the computational cost is less expensive than a fully 3D approach. In what concerns bedload transport, a new general formulation will be introduced that recovers classic formulae as a particular case, but incorporates more information on the physics of the problem. This makes the model more suitable for practical applications. ACKNOWLEDGMENTS This research has been partially supported by the Junta de Andalucía research project TESELA (P11-RNM7069) and by the Spanish Government and FEDER through the research project DAIFLUID (MTM2012-38383-C02-01 and MTM2012-38383-C02-02)

  2. Point based hydrodynamics applied to shallow water equations

    SciTech Connect

    Eltgroth, P.

    1994-05-01

    Smoothed Particle Hydrodynamics (SPH) has proven useful for many problems of scientific interest. This report is concerned with a generalization to the SPH method which may be of value for problems such as climate modeling. The main objective of the work is to carry out the new formulation, called Point Interactive Physics and to compare results for PIP and standard finite difference techniques on a simple test problem. The basic SPH approach describes a system using a set of points. These points are not associated with a grid or mesh, as in most approaches. The individual points are each assigned a mass and move with the material velocity. Thus the original SPH method is Lagrangian. Properties of the system are expressed as sums over the sample points using a weighting function called a kernel function. For most problems, tile weighting function extends over a relatively short range, called the smoothing length. The Point Interacting Physics (PIP) approach also samples information at a set of points, and then uses kernel functions to infer physical properties everywhere. The points are not assigned fixed values of miss and they are allowed to undergo arbitrary physically reasonable motion. In this report, results will be presented for fixed points arranged irregularly over a spherical surface. Thus, this version of PIP will be applied in an Eulerian fashion. The basic reason for the Eulerian treatment is enhanced efficiency arising from the fixed geometric relationships among the points. After a brief description of the SPH and PIP methods, the PIP formulation will be compared to a normal finite difference approach for a simple shallow water advection test problem. It appears that accurate simulations can be accomplished, but that computational speed is comparable to that observed for other techniques.

  3. Deposit feeding in selected deep-sea and shallow-water benthic foraminifera

    NASA Astrophysics Data System (ADS)

    Goldstein, Susan T.; Corliss, Bruce H.

    1994-02-01

    Ultrastructural evidence for deposit feeding in two deep-sea foraminifera, Globobulimina pacifica and Uvigerina peregrina, is presented and compared with results on Ammonia beccarii, a common nearshore dweller. In all three taxa, food vacuoles are common in the last chamber and contain numerous aggregates of sediment and organic detritus. Within aggregates, bacteria are often found surrounded by a sheath of sediment particles generally bound by bacterial exopolymers. In actively-feeding individuals of A. beccarii, food vacuoles along the distal edge of the cytoplast contain live bacteria associated with sediment aggregates as well. Bacteria do not occur in the cell's interior, although hollow sheaths of sediment and detritus do persist. This indicates that the digestion of bacteria may occur very near the distal margin of the cytoplast in this species. Likewise, sediment aggregates both with and without bacteria occur in food vacuoles of the deep-sea species examined. All three species ingest relatively large volumes of organic detritus associated with sediments, although the role of this material in the diet of foraminifera is uncertain. These results suggest that the deep-sea and shallow-water species examined feed on bacteria by deposit feeding and ingest bacterial cells, in addition to relatively large volumes of associated sediment and organic detritus.

  4. The shallow-water New Caledonia Drilliidae of genus Clavus Montfort, 1810 (Mollusca: Gastropoda: Conoidea).

    PubMed

    Kilburn, Richard N; Fedosov, Alexander; Kantor, Yuri

    2014-06-18

    Species of the genus Clavus of the conoidean family Drilliidae that occur in the littoral and shallow waters of New Caledonia are here revised. This study is based primarily on recent expedition material from the Institut de Recherche pour le Développement (New Caledonia) and Muséum National d'Histoire Naturelle (France). A total of 22 species is recorded, of which eight are described as new. New species: Clavus boucheti, Clavus delphineae, Clavus virginieae, Clavus picoides, Clavus squamiferus, Clavus devexistriatus, Clavus hylikos, Clavus maestratii; New synonyms: Tylotiella Habe, 1958 = Clavus; Clavus leforestieri Hervier, 1896 = Pleurotoma obliquicostata Reeve, 1845; Pleurotoma mariei Crosse, 1869 = Pleurotoma lamberti Montrouzier, 1860; Clavus mighelsi Kay, 1979, new name for Pleurotoma acuminata Mighels, 1845, non J. Sowerby, 1816, was misidentified by Kay 1979; the lectotype of P. acuminata Mighels, 1845, is mangeliine. Clavus mighelsi sensu Kay 1979, is a synonym of Pleurotoma humilis E. A. Smith, 1879. It is suggested that Pleurotoma pulchella Reeve, 1845, sometimes treated as an Indo-Pacific species, may be a senior synonym of Fenimorea halidorema Schwengel, 1940, from the tropical western Atlantic. Nomen dubium: Pleurotoma mediocris Deshayes, 1863.

  5. Acute combined pressure and temperature exposures on a shallow-water crustacean: novel insights into the stress response and high pressure neurological syndrome.

    PubMed

    Morris, J P; Thatje, S; Ravaux, J; Shillito, B; Fernando, D; Hauton, C

    2015-03-01

    Little is known about the ecological and physiological processes governing depth distribution limits in species. Temperature and hydrostatic pressure are considered to be two dominant factors. Research has shown that some marine ectotherms are shifting their bathymetric distributions in response to rapid anthropogenic ocean surface warming. Shallow-water species unable to undergo latitudinal range shifts may depend on bathymetric range shifts to seek refuge from warming surface waters. As a first step in constraining the molecular basis of pressure tolerance in shallow water crustaceans, we examined differential gene expression in response to acute pressure and temperature exposures in juveniles of the shallow-water shrimp Palaemonetes varians. Significant increases in the transcription of genes coding for an NMDA receptor-regulated protein, an ADP ribosylation factor, β-actin, two heat shock protein 70 kDa isoforms (HSP70), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were found in response to elevated pressure. NMDA receptors have been implicated in pathways of excitotoxic damage to neurons and the onset of high pressure neurological syndrome (HPNS) in mammals. These data indicate that the sub-lethal effects of acute barotrauma are associated with transcriptional disturbances within the nervous tissue of crustaceans, and cellular macromolecular damage. Such transcriptional changes lead to the onset of symptoms similar to that described as HPNS in mammals, and may act as a limit to shallow water organisms' prolonged survival at depth.

  6. Coordinating perception and action with an underwater robot in a shallow water environment

    NASA Astrophysics Data System (ADS)

    Bonasso, R. P.

    1992-04-01

    It is usually difficult to use underwater robots for mapping, reconnaissance, and mine-clearing tasks in shallow water (10 to 80 foot depth) ocean environments. The shallow water environment is characterized by strong, intermittent wave surge which requires robot behaviors that are capable of riding out the surge and then repositioning the platform and re- acquiring the objects being sensed. The shallow water area is also characterized by water that is murky, making optical sensors useless for long range search, and which produces multiple paths for sonar returns, giving errant range readings. Teleoperation from a remote surface platform is not effective due to the rapid changes in the environment. A more promising approach would place reactive intelligence on-board the robot. This paper describes such an approach which uses high frequency acoustic and vision sensing and a situated reasoning software architecture to provide task-achieving capability to an underwater robot in a shallow water environment. The approach is demonstrated in the context of a shallow water marking task wherein a robot must locate and navigate to a moored object in shallow water depths, attach a buoyant marker, and then return to a destination location. The approach seeks to integrate selective perception with robust transit and hovering behaviors to overcome the natural problems associated with shallow water environments.

  7. Shallow water processes govern system-wide phytoplankton bloom dynamics: A field study

    USGS Publications Warehouse

    Thompson, J.K.; Koseff, Jeffrey R.; Monismith, Stephen G.; Lucas, L.V.

    2008-01-01

    Prior studies of the phytoplankton dynamics in South San Francisco Bay, California, USA have hypothesized that bivalve filter-feeders are responsible for the limited phytoplankton blooms in the system. This study was designed to examine the effects of benthic grazing and light attenuation on this shallow, turbid, and nutrient replete system. We found that grazing by shallow water bivalves was important in determining phytoplankton bloom occurrence throughout the system and that above a shallow water bivalve grazing threshold, phytoplankton biomass did not exceed bloom levels. Wind speed, used as a proxy for light attenuation in the shallow water, was similarly important in determining bloom development in the shallow water. Environmental conditions and benthic grazing in the deep water channel had a less discernible effect on system-wide phytoplankton blooms although persistent water column stratification did increase bloom magnitude. The shallow water bivalves, believed to be preyed upon by birds and fish that migrate through the system in fall and winter, disappear each year prior to the spring phytoplankton bloom. Because growth of the phytoplankton depends so strongly on shallow water processes, any change in the shallow-water benthic filter-feeders or their predators has great potential to change the phytoplankton bloom dynamics in this system. ?? 2007 Elsevier B.V. All rights reserved.

  8. Changes in Species, Areal Cover, and Production of Moss across a Fire Chronosequence in Interior Alaska

    USGS Publications Warehouse

    Harden, J.W.; Munster, J.; Manies, K.L.; Mack, M.C.; Bubier, J.L.

    2009-01-01

    In an effort to characterize the species and production rates of various upland mosses and their relationship to both site drainage and time since fire, annual net primary production of six common moss species was measured. Several stands located near Delta Junction, interior Alaska, were located. These stands ranged from one to 116 years since fire in well-drained (dry) and moderately to somewhat poorly drained (wet) black spruce (Picea mariana)-feathermoss systems. Moss species composition varied greatly during the fire cycle, with Ceratodon purpureus dominating the earliest years after a fire, Aulacomnium palustre dominating the transitional and older stages, and Hylocomium splendens dominating the oldest, mature sites. Polytrichum spp. was found at all sites. Average moss cover ranged from <10 percent in the youngest sites to almost 90 percent in the mature sites. Species from the genus Polytrichum were the most productive and contributed up to 30 g m2 of organic matter in one growing season. Least productive was Rhytidium rugosum, which contributed about 1.5 g m2 of organic matter in mature stands. Recovery of moss productivity after fire was not significantly different for wet and dry sites.

  9. Relative Pigment Composition and Remote Sensing Reflectance of Caribbean Shallow-Water Corals.

    PubMed

    Torres-Pérez, Juan L; Guild, Liane S; Armstrong, Roy A; Corredor, Jorge; Zuluaga-Montero, Anabella; Polanco, Ramón

    2015-01-01

    Reef corals typically contain a number of pigments, mostly due to their symbiotic relationship with photosynthetic dinoflagellates. These pigments usually vary in presence and concentration and influence the spectral characteristics of corals. We studied the variations in pigment composition among seven Caribbean shallow-water Scleractinian corals by means of High Performance Liquid Chromatography (HPLC) analysis to further resolve the discrimination of corals. We found a total of 27 different pigments among the coral species, including some alteration products of the main pigments. Additionally, pigments typically found in endolithic algae were also identified. A Principal Components Analysis and a Hierarchical Cluster Analysis showed the separation of coral species based on pigment composition. All the corals were collected under the same physical environmental conditions. This suggests that pigment in the coral's symbionts might be more genetically-determined than influenced by prevailing physical conditions of the reef. We further investigated the use of remote sensing reflectance (Rrs) as a tool for estimating the total pigment concentration of reef corals. Depending on the coral species, the Rrs and the total symbiont pigment concentration per coral tissue area correlation showed 79.5-98.5% confidence levels demonstrating its use as a non-invasive robust technique to estimate pigment concentration in studies of coral reef biodiversity and health. PMID:26619210

  10. Relative Pigment Composition and Remote Sensing Reflectance of Caribbean Shallow-Water Corals

    PubMed Central

    Torres-Pérez, Juan L.; Guild, Liane S.; Armstrong, Roy A.; Corredor, Jorge; Zuluaga-Montero, Anabella; Polanco, Ramón

    2015-01-01

    Reef corals typically contain a number of pigments, mostly due to their symbiotic relationship with photosynthetic dinoflagellates. These pigments usually vary in presence and concentration and influence the spectral characteristics of corals. We studied the variations in pigment composition among seven Caribbean shallow-water Scleractinian corals by means of High Performance Liquid Chromatography (HPLC) analysis to further resolve the discrimination of corals. We found a total of 27 different pigments among the coral species, including some alteration products of the main pigments. Additionally, pigments typically found in endolithic algae were also identified. A Principal Components Analysis and a Hierarchical Cluster Analysis showed the separation of coral species based on pigment composition. All the corals were collected under the same physical environmental conditions. This suggests that pigment in the coral’s symbionts might be more genetically-determined than influenced by prevailing physical conditions of the reef. We further investigated the use of remote sensing reflectance (Rrs) as a tool for estimating the total pigment concentration of reef corals. Depending on the coral species, the Rrs and the total symbiont pigment concentration per coral tissue area correlation showed 79.5–98.5% confidence levels demonstrating its use as a non-invasive robust technique to estimate pigment concentration in studies of coral reef biodiversity and health. PMID:26619210

  11. Calculations of Asteroid Impacts into Deep and Shallow Water

    NASA Astrophysics Data System (ADS)

    Gisler, Galen; Weaver, Robert; Gittings, Michael

    2011-06-01

    kilometers from the impact point, and fallout from the initial splash can be extremely violent. There is some indication that near-field effects are more severe if the impact occurs in shallow water.

  12. Ring-type multisoliton dynamics in shallow water.

    PubMed

    Mannan, Abdul; Fedele, Renato; Onorato, Miguel; De Nicola, Sergio; Jovanović, Dušan

    2015-01-01

    The propagation, in a shallow water, of nonlinear ring waves in the form of multisolitons is investigated theoretically. This is done by solving both analytically and numerically the cylindrical (also referred to as concentric) Korteweg-de Vries equation (cKdVE). The latter describes the propagation of weakly nonlinear and weakly dispersive ring waves in an incompressible, inviscid, and irrotational fluid. The spatiotemporal evolution is determined for a cylindrically symmetric response to the free fall of an initially given multisoliton ring. Analytically, localized solutions in the form of tilted solitons are found. They can be thought as single- or multiring solitons formed on a conic-modulated water surface, with an oblique asymptote in arbitrary radial direction (tilted boundary condition). Conversely, the ring solitons obtained from numerical solutions are localized single- or multiring structures (standard solitons), whose wings vanish along all radial directions (standard boundary conditions). It is found that the wave dynamics of these standard ring-type localized structures differs substantially from that of the tilted structures. A detailed analysis is performed to determine the main features of both multiring localized structures, particularly their break-up, multiplet formation, overlapping of pulses, overcoming of one pulse by another, "amplitude-width" complementarity, etc., that are typically ascribed to a solitonlike behavior. For all the localized structures investigated, the solitonlike character of the rings is found to be preserved during (almost) entire temporal evolution. Due to their cylindrical character, each ring belonging to one of these multiring localized structures experiences the physiological decay of the peak and the physiological increase of the width, respectively, while propagating ("amplitude-width" complementarity). As in the planar geometry, i.e., planar Korteweg-de Vries equation (pKdVE), we show that, in the case of the

  13. Toxicological assessment of aquatic ecosystems: application to watercraft contaminants in shallow water environments

    USGS Publications Warehouse

    Winger, P.V.; Kemmish, Michael J.

    2002-01-01

    Recreational boating and personal watercraft use have the potential to adversely impact shallow water systems through contaminant release and physical disturbance of bottom sediments. These nearshore areas are often already degraded by surface runoff, municipal and industrial effluents, and other anthropogenic activities. For proper management, information is needed on the level of contamination and environmental quality of these systems. A number of field and laboratory procedures can be used to provide this much needed information. Contaminants, such as metals, pesticides, polychlorinated biphenyls and polycyclic aromatic hydrocarbons, entering aquatic environments generally attach to particulate matter that eventually settles and becomes incorporated into the bottom sediments. Because bottom sediments serve as a sink and as a source for contaminants, environmental assessments generally focus on this matrix. While contaminant residues in sediments and sediment pore waters can reflect environmental quality, characteristics of sediment (redox potential, sediment/pore-water chemistry, acid volatile sulfides, percent organic matter, and sediment particle size) influence their bioavailability and make interpretation of environmental significance difficult. Comparisons of contaminant concentrations in pore water (interstitial water) and sediment with water quality criteria and sediment quality guidelines, respectively, can provide insight into potential biological effects. Laboratory bioaccumulation studies and residue concentrations in resident or caged biota also yield information on potential biological impacts. The usefulness of these measurements may increase as data are developed relating in-situ concentrations, tissue residue levels, and biological responses. Exposure of test organisms in situ or to field-collected sediment and pore water are additional procedures that can be used to assess the biological effects of contaminants. A battery of tests using multi-species

  14. Antimicrobial Activity of Marine Bacterial Symbionts Retrieved from Shallow Water Hydrothermal Vents.

    PubMed

    Eythorsdottir, Arnheidur; Omarsdottir, Sesselja; Einarsson, Hjorleifur

    2016-06-01

    Marine sponges and other sessile macro-organisms were collected at a shallow water hydrothermal site in Eyjafjörður, Iceland. Bacteria were isolated from the organisms using selective media for actinomycetes, and the isolates were screened for antimicrobial activity. A total of 111 isolates revealed antimicrobial activity displaying different antimicrobial patterns which indicates production of various compounds. Known test strains were grown in the presence of ethyl acetate extracts from one selected isolate, and a clear growth inhibition of Staphylococcus aureus was observed down to 0.1 % extract concentration in the medium. Identification of isolates shows different species of Actinobacteria with Streptomyces sp. playing the largest role, but also members of Bacilli, Alphaproteobacteria and Gammaproteobacteria. Sponges have an excellent record regarding production of bioactive compounds, often involving microbial symbionts. At the hydrothermal vents, however, the majority of active isolates originated from other invertebrates such as sea anemones or algae. The results indicate that antimicrobial assays involving isolates in full growth can detect activity not visible by other methods. The macro-organisms inhabiting the Eyjafjörður hydrothermal vent area host diverse microbial species in the phylum Actinobacteria with antimicrobial activity, and the compounds responsible for the activity will be subject to further research. PMID:27147438

  15. Antimicrobial Activity of Marine Bacterial Symbionts Retrieved from Shallow Water Hydrothermal Vents.

    PubMed

    Eythorsdottir, Arnheidur; Omarsdottir, Sesselja; Einarsson, Hjorleifur

    2016-06-01

    Marine sponges and other sessile macro-organisms were collected at a shallow water hydrothermal site in Eyjafjörður, Iceland. Bacteria were isolated from the organisms using selective media for actinomycetes, and the isolates were screened for antimicrobial activity. A total of 111 isolates revealed antimicrobial activity displaying different antimicrobial patterns which indicates production of various compounds. Known test strains were grown in the presence of ethyl acetate extracts from one selected isolate, and a clear growth inhibition of Staphylococcus aureus was observed down to 0.1 % extract concentration in the medium. Identification of isolates shows different species of Actinobacteria with Streptomyces sp. playing the largest role, but also members of Bacilli, Alphaproteobacteria and Gammaproteobacteria. Sponges have an excellent record regarding production of bioactive compounds, often involving microbial symbionts. At the hydrothermal vents, however, the majority of active isolates originated from other invertebrates such as sea anemones or algae. The results indicate that antimicrobial assays involving isolates in full growth can detect activity not visible by other methods. The macro-organisms inhabiting the Eyjafjörður hydrothermal vent area host diverse microbial species in the phylum Actinobacteria with antimicrobial activity, and the compounds responsible for the activity will be subject to further research.

  16. Conservation laws and symmetries of the shallow water system above rough bottom

    NASA Astrophysics Data System (ADS)

    Aksenov, A. V.; Druzhkov, K. P.

    2016-06-01

    The system of one-dimensional shallow water equations above the rough bottom is considered. All its hydrodynamic conservation laws are found, and a group classification is performed. A new conservation law additional to the two basic conservation laws is found. It is shown that the system of shallow water equations can be linearized by a point change of variables only in cases of constant and linear bottom profiles.

  17. Localized vortices in a nonlinear shallow water model: examples and numerical experiments

    NASA Astrophysics Data System (ADS)

    Beisel, S. A.; Tolchennikov, A. A.

    2016-06-01

    Exact solutions of the system of nonlinear shallow water equations on paraboloid are constructed by the method of group analysis. These solutions describe fast wave motion of the fluid layer and slow evolution of symmetric localized vortices. Explicit formulae are obtained for asymptotic solution related to the linear shallow water approximation. Numerical methods are used by the modeling the trajectory of the vortex center in the case of asymmetric vortices.

  18. Modeling shallow-water hydrodynamics: Rotations, rips, and rivers

    NASA Astrophysics Data System (ADS)

    Long, Joseph W.

    Hydrodynamic models are used as a diagnostic tool to understand the temporal variability of shallow-water processes that are difficult to completely resolve with traditional field measurements. For all simulations, modeled quantities are qualitatively or quantitatively compared with available measurements to gain confidence in conclusions derived from the modeled results. In this work we consider both vorticity motions and rip currents, which arise from alongshore inhomogeneities in the wave momentum flux but occur at much different time scales (O(min) vs. O(hours-weeks)). They each have an effect on sediment transport processes and dispersion of sediments or pollutants in the surf zone, which makes understanding their structure and persistence essential. The vorticity motions of interest here are associated with spatial and temporal wave height variations caused by wave grouping and can exist with either normally or obliquely incident wave conditions. We find that these flows persist for O(1000s) but their lifespan is controlled by the sequence of wave forcing rather than bottom friction as previously hypothesized. These motions can also be observed in combination with either stable or unstable alongshore currents. Our results suggest that, at times, these alongshore propagating wave group forced vortices are misinterpreted as instabilities of the alongshore current. Alternately, the rip currents considered in this research are controlled by strong wave height gradients in the surf zone generated by the refraction of incident waves over variable offshore depth contours. Thus, this type of circulation is governed by timescales associated with changing offshore wave conditions (O(hours - days)). We consider a four- week time period when variable offshore wave spectra were observed during a large-scale field experiment. The model and data are in good agreement for all wave conditions during the month and estimated model errors are similar to those found previously

  19. Historical abundance and morphology of Didymosphenia species in Naknek Lake, Alaska

    USGS Publications Warehouse

    Pite, D.P.; Lane, K.A.; Hermann, A.K.; Spaulding, S.A.; Finney, B.P.

    2009-01-01

    Since the 1980s, nuisance blooms of Didymosphenia geminata (Lyngbye) M. Schmidt have been documented in sites that are warmer and more mesotrophic than historical records indicate. While the invasion of D. geminata in New Zealand is well documented, it is less clear whether nuisance blooms in North America are a new phenomenon. In order to test the hypothesis that D. geminata blooms have increased in recent years, we examined the historical record of this species in sediments of Naknek Lake, in Katmai National Park, Alaska. Chronological control was established by relating the presence of two ash layers to known volcanic eruptions. We identified two species of Didymosphenia within the sediment record: D. geminata and D. clavaherculis (Ehrenberg) Metzeltin et Lange-Bertalot. This is the first published record of D. clavaherculis in North America. We found no statistically significant change in the numerical presence of D. geminata or D. clavaherculis, as a group, in Naknek Lake between the years 1218 and 2003. While there has been no sudden, or recent, increase in abundance of Didymosphenia in Naknek Lake, morphological features of D. geminata populations in Naknek Lake are distinct compared to morphological features of D. geminata in streams containing nuisance blooms from sites in North America and New Zealand. Variance in the morphology of Didymosphenia cells may help determine relationships between distinct sub-populations and establish the history of habitat invasion.

  20. A New Microbial Player on the Iron Redox Court of Shallow-Water Hydrothermal Vents

    NASA Astrophysics Data System (ADS)

    Perez-Rodriguez, I. M.; Rawls, M.; Coykendall, D. K.; Foustoukos, D.

    2015-12-01

    The Fe(III)/Fe(II) couple is thought to have been a significant early energy metabolism involved in some of the first biogeochemical processes on Earth (Weber et al., 2006). The early evolving and metal-rich nature of modern hydrothermal systems remain particularly significant for Fe-based activities (Vargas et al., 1998). Documented evidence from such systems show a variety of yet unknown microbial lineages potentially linked to the history of Fe (i.e., Meyer-Dombard and Amend, 2014). Here we describe a novel microbe that reduces Fe(III) at shallow-water hydrothermal vents in Milos Island, Greece. Our laboratory experiments show this strain, MAG-PB1T, to reduce Fe(III) between 30 - 70 °C, 0 - 50 g NaCl l-1 and pH 5.5 - 8.0. Shortest generation time occurred under optimal conditions (60 °C, ~1.8 g NaCl l-1, pH 6.0) with H2 as the energy source, CO2 as the carbon source and Fe(III) as electron acceptor. Its metabolic characteristics are, however, not limited to this pathway. Strain MAG-PB1T can also reduce Mn(IV), arsenate and selenate. Its use of at least 9 organic substrates as energy or carbon sources also demonstrates its mixotrophy. Phylogenetic 16S rRNA gene analyses place strain MAG-PB1T within the Deltaproteobacteria, with the closest match (99%) being an uncultured microbe from hydrothermal springs in Ambitle Island, Papua New Guinea (Meyer-Dombard and Amend, 2014). Its next closest match (97%) is Deferrisoma camini, isolated from a deep-sea vent in the Eastern Lau Spreading Center (Slobodkina et al. 2012). Our strain represents a novel species, which we named Deferrisoma paleochoriense. The occurrence of D. paleochoriense in the shallow-water vents of Milos and Ambitle islands coincides with high arsenic, iron and sulfide contents (Akerman et al., 2011; Price et al., 2013; Yücel et al., 2013). Consequently, our study provides important physiological and metabolic evidence of the feedback between metal chemistry and life in hydrothermal sytems rich in

  1. A comprehensive inventory of the Gulf of Alaska sponge fauna with the description of two new species and geographic range extensions.

    PubMed

    Lehnert, Helmut; Stone, Robert P

    2016-01-01

    Two new species, Hamacantha (Vomerula) cassanoi n. sp. and Prosuberites salgadoi n. sp., are described from the eastern Gulf of Alaska in the North Pacific Ocean. These are the first records of the genera Hamacantha and Prosuberites from Alaska. We also report two geographic range extensions for the region. Geodia japonica Sollas, 1888 was previously known only from Japan and is now recorded from the Gulf of Alaska. We also document the first record of Rhizaxinella cervicornis Thiele, 1898 from the Gulf of Alaska. Our comprehensive inventory of the sponge fauna of the Gulf of Alaska confirms the presence of 52 taxa with an additional 38 taxa suspected of occurring in the region. This is a much lower number of species than that recorded from neighbouring regions like the Aleutian Islands and British Columbia. PMID:27470862

  2. Compressional effects in nonneutral plasmas, a shallow water analogy and m=1 instability

    NASA Astrophysics Data System (ADS)

    Finn, John M.; del-Castillo-Negrete, Diego; Barnes, Daniel C.

    1999-10-01

    Diocotron instabilities form an important class of E×B shear flow instabilities which occur in nonneutral plasmas. The case of a single-species plasma confined in a cylindrical Penning trap, with an axisymmetric, hollow (nonmonotonic) density profile is studied. According to the standard linear theory, the m=1, kz=0 diocotron mode is always stable. On the other hand, experiments by Driscoll [Phys. Rev. Lett. 64, 645 (1990)] show a robust exponential growth of m=1 diocotron perturbations in hollow density profiles. The apparent contradiction between these experimental results and linear theory has been an outstanding problem in the theory of nonneutral plasmas. A new instability mechanism due to the radial variation of the equilibrium plasma length is proposed in this paper. This mechanism involves the compression of the plasma parallel to the magnetic field and implies the conservation of the line integrated density. The predicted growth rate, frequency, and mode structure are in reasonable agreement with the experiment. The effect of a linear perturbation of the plasma length is also shown to give instability with a comparable growth rate. The conservation of the line integrated density in the plasma is analogous to the conservation of the potential vorticity in the shallow water equations used in geophysical fluid dynamics. In particular, there is an analog of Rossby waves in nonneutral plasmas.

  3. Cenomanian-Turonian transition in a shallow water sequence of the Sinai, Egypt

    NASA Astrophysics Data System (ADS)

    Gertsch, B.; Keller, G.; Adatte, T.; Berner, Z.; Kassab, A. S.; Tantawy, A. A. A.; El-Sabbagh, A. M.; Stueben, D.

    2010-01-01

    Environmental and depositional changes across the Late Cenomanian oceanic anoxic event (OAE2) in the Sinai, Egypt, are examined based on biostratigraphy, mineralogy, δ13C values and phosphorus analyses. Comparison with the Pueblo, Colorado, stratotype section reveals the Whadi El Ghaib section as stratigraphically complete across the late Cenomanian-early Turonian. Foraminifera are dominated by high-stress planktic and benthic assemblages characterized by low diversity, low-oxygen and low-salinity tolerant species, which mark shallow-water oceanic dysoxic conditions during OAE2. Oyster biostromes suggest deposition occurred in less than 50 m depths in low-oxygen, brackish, and nutrient-rich waters. Their demise prior to the peak δ13C excursion is likely due to a rising sea-level. Characteristic OAE2 anoxic conditions reached this coastal region only at the end of the δ13C plateau in deeper waters near the end of the Cenomanian. Increased phosphorus accumulations before and after the δ13C excursion suggest higher oxic conditions and increased detrital input. Bulk-rock and clay mineralogy indicate humid climate conditions, increased continental runoff and a rising sea up to the first δ13C peak. Above this interval, a dryer and seasonally well-contrasted climate with intermittently dry conditions prevailed. These results reveal the globally synchronous δ13C shift, but delayed effects of OAE2 dependent on water depth.

  4. Intertidal rocky shore seaweed communities subject to the influence of shallow water hydrothermal activity in São Miguel (Azores, Portugal)

    NASA Astrophysics Data System (ADS)

    Wallenstein, Francisco M.; Couto, Ruben P.; Torrão, Daniel F.; Neto, Ana I.; Rodrigues, Armindo S.; Wilkinson, Martin

    2013-09-01

    The volcanic origin of the Azores archipelago (Portugal) gives rise to active deep sea and shallow water hydrothermal activity that affects benthic communities. Intertidal seaweed surveys were conducted at two shores affected by intense shallow water hydrothermal vents. Water temperature, acidity and salinity were monitored. Seaweed communities were found to be species poor and have a disproportionally larger number of filamentous early successional species on shores that are subject to the effect of hot and acidic freshwater of volcanic origin. There is an ecological resemblance between hydrothermally affected seaweed communities in the Azores and those affected by acid mine drainage in the UK, thus indicating that hydrothermalism can be a useful scenario for pollution studies under conditions of ocean warming and acidification.

  5. A new genus and species of Thyasiridae (Mollusca, Bivalvia) from deep-water, Beaufort Sea, northern Alaska.

    PubMed

    Valentich-Scott, Paul; Powell, Charles L; Ii; Lorenson, Thomas D; Edwards, Brian E

    2014-01-01

    Bivalve mollusk shells were collected in 2350 m depth in the Beaufort Sea, Arctic Ocean off northern Alaska. Initial identification suggested the specimens were a member of the bivalve family Thyasiridae, but no known eastern Pacific or Arctic living or fossil thyasirid resembled these deep-water specimens. Comparisons were made with the type of the genera Maorithyas Fleming, 1950, Spinaxinus Oliver & Holmes, 2006, Axinus Sowerby, 1821, and Parathyasira Iredale, 1930. We determined the Beaufort Sea species represents a new genus, herein described as Wallerconcha. These specimens also represent a new species, herein named Wallerconchasarae. These new taxa are compared with known modern and fossil genera and species of thyasirds.

  6. Habitat values for artificial oyster ( Crassostrea ariakensis) reefs compared with natural shallow-water habitats in Changjiang River estuary

    NASA Astrophysics Data System (ADS)

    Quan, Weimin; Zheng, Lin; Li, Beijun; An, Chuanguang

    2013-09-01

    Oyster reefs have an equivalent, complex 3-dimensional structure to vegetated habitats and may provide similar functions in estuarine environments. Nevertheless, few studies have compared oyster reefs with adjacent natural shallow-water habitats. Here the resident benthic macroinvertebrate communities in an artificial oyster ( Crassostrea ariakensis) reef and in adjacent natural estuarine shallow-water habitats (salt marsh, intertidal mudflat, and subtidal soft bottom) in the Changjiang (Yangtze) River estuary were described. The mean total densities and biomass, Margalef's species richness, Pielou's evenness and Shannon-Weaver biodiversity indices of the resident benthic macroinvertebrate communities differed significantly among the habitats. Significantly higher densities and biomass of benthic macroinvertebrates occurred in the oyster reef compared with the other three habitats. Ordination plots showed a clear separation in benthic macroinvertebrate communities among the four habitat types. The results demonstrated that the artificial oyster reef supported distinct and unique benthic communities, playing an important role in the complex estuarine habitat by supplying prey resources and contributing to biodiversity. In addition, the results suggested that the oyster reef had been restored successfully.

  7. Multipath Effects on High-Frequency Coherent Acoustic Communications in Shallow Water

    NASA Astrophysics Data System (ADS)

    Son, Su-Uk; Kim, Hyeonsu; Joo, Jongmin; Choi, Jee Woong

    2013-07-01

    Shallow-water acoustic communication channel, referred to as a multipath-limited channel, produces inter-symbol interference that poses a significant obstacle to reliable communication. Accordingly, signal-to-multipath ratio (SMR), rather than signal-to-noise ratio (SNR), becomes an important factor affecting communication performance. However, it is difficult to estimate SMR from measured communication data, especially at higher frequency (>10 kHz) because many arrivals scattered from rough ocean boundaries produce a significant intrapath time spreading, which acts as random noise in communication. In this paper, the energy fraction of the channel impulse response existing in one symbol duration is proposed as a parameter for estimating the quality of shallow-water communication channels. This parameter is compared with the bit-error-rate performance for data acquired in shallow water off the south coast of Korea, where the water depth is 45 m and the bottom consists of sandy clay sediment. The results imply that the energy fraction in one symbol duration may be used as a parameter for describing shallow-water communication channels and applied to the quick decision of a symbol or bit rate in a shallow-water field for reliable underwater communication.

  8. Adaptation to deep-sea methane seeps from Cretaceous shallow-water black shale environments?

    NASA Astrophysics Data System (ADS)

    Kiel, Steffen; Wiese, Frank; Titus, Alan

    2013-04-01

    Sulfide-enriched environments in shallow water were considered as sites where animals acquire pre-adaptations enabling them to colonize deep-sea hydrothermal vents and seeps or where they survived extinction events in their deep-sea habitats. Here we present upper Cenomanian (early Late Cretaceous) shallow-water seep communities from the Tropic Shale in the Western Interior Seaway, USA, that lived during a time of extremely warm deep-water temperatures, which supposedly facilitates adaptations to the deep sea, and time-equivalent with a period of widespread oceanic and photic zone anoxia (OAE 2) that supposedly extinguished deep-water vent and seep faunas. Contrary to the expectation, the taxa inhabiting the Tropic Shale seeps were not found at any coeval or younger deep-water seep or vent deposit. This suggests that (i) pre-adaptations for living at deep-sea vents and seeps do not evolve at shallow-water methane seeps, and probably also not in sulfide-rich shallow-water environments in general; (ii) a low temperature gradient from shallow to deep water does not facilitate onshore-offshore adaptations to deep-sea vents and seeps; and (iii) shallow-water seeps did not act as refuges for deep-sea vent and seep animals. We hypothesize that the vast majority of adaptations to successfully colonize deep-sea vents and seeps are acquired below the photic zone.

  9. Ecological Turnover of Shallow Water Carbonate Producers Following the Paleocene-Eocene Thermal Maximum

    NASA Astrophysics Data System (ADS)

    Weiss, A.; Martindale, R. C.

    2015-12-01

    Modern coral reef ecosystems are under threat from global climate change (and associated, synergistic stresses) and local environmental degradation. Therefore, it is important for ecologists to understand how ecosystems adapt and recover from climate change. The fossil record provides excellent case studies of similar events, such as the Paleocene-Eocene Thermal Maximum (PETM). Although Paleocene and Eocene shallow water carbonates have not received the same degree of attention as the deep-water record, the PETM provides an opportunity to study the role of alternative stable states in maintaining the health and diversity of shallow water carbonate environments. It is generally accepted that during the PETM there is a transition from reef systems to foraminiferal shoals as the dominant shallow water carbonate producers. In fact, previous work has documented this interval as one of the major metazoan reef collapses of the Phanerozoic. This study fills an important gap in the shallow-water PETM record by quantitatively measuring the changes in carbonate production and ecology of 15 localities as they shift from coral reefs to foraminiferal shoal. The quantitative and semi-quantitative analysis is accomplished by using data from the PaleoReefs database and a simple carbonate production calculation to estimate the productivity of the shallow water system. Ecological data are gathered through a literature review of the localities. The results of this study will enable a better understanding of how modern reefs may react to global climate and environmental change.

  10. Dependence of waterbirds and shorebirds on shallow-water habitats in the Mid-Atlantic coastal region: An ecological profile and management recommendations

    USGS Publications Warehouse

    Erwin, R.M.

    1996-01-01

    Waterbirds (waterfowl, colonially nesting wading and seabirds, ospreys [Pandion haliaetus], and bald eagles [Haliaeetus leucocephalus]) and shorebirds (sandpipers, plovers, and relatives) may constitute a large fraction of the top level carnivore trophic component in many shallow-water areas of the mid-Atlantic region. The large biomass of many species (>1 kg body mass for the two raptors and some waterfowl) and enormous populations (e.g., >1 million shorebirds in late May in parts of Delaware Bay) reveal the importance of waterbirds as consumers and as linkages in nutrient flux in many shallow-water habitats. Salt and brackish marsh shallow-water habitats, including marsh pannes and tidal pools and creeks as well as constructed impoundments, are used intensively during most months of the year; in fall and winter, mostly by dabbling ducks, in spring and summer by migrant shorebirds and breeding colonial wading birds and seabirds. In adjacent estuaries, the intertidal flats and littoral zones of shallow embayments are heavily used by shorebirds, raptors, and colonial waterbirds in the May to September periods, with use by duck and geese heaviest from October to March. With the regional degradation of estuarine habitats and population declines of many species of waterbirds in the past 20 yr, some management recommendations relevant to shallow waters include: better protection, enhancement, and creation of small bay islands (small and isolated to preclude most mammalian predators) for nesting and brooding birds, especially colonial species; establishment of sanctuaries from human disturbance (e.g., boating, hunting) both in open water (waterfowl) and on land, better allocation of sandy dredged materials to augment islands or stabilize eroding islands; improvement in water management of existing impoundments to ensure good feeding, resting, and nesting opportunities for all the waterbirds, support for policies to preclude point and nonpoint source runoff of chemicals

  11. Examining mechanisms in the final stages of the elimination of boreal tree species on vulnerable sites in boreal Alaska

    NASA Astrophysics Data System (ADS)

    Juday, G. P.; Jess, R.; Alix, C. M.; Verbyla, D.

    2015-12-01

    The boreal forest of Alaska and western Canada exist in a complex mosaic of environments determined by elevation, aspect of exposure, and longitudinal and latitudinal gradients of change from warm, dry continental to maritime-influenced conditions. This forest region is largely made up of trees with two growth responses to temperature increases. Trees that decrease in growth are termed negative responders, and occupy warm, dry sites at low elevations. Trees that increase in radial growth are termed positive responders, and are largely in western Alaska, and at high elevation of the Brooks and Alaska Ranges. Since the Pacific climate regime shift of the 1970s, mature trees at low elevation sites have experienced increasing climate stress in several quasi-decadal cycles of intensifying drought stress. NDVI trends and tree ring records demonstrating radial growth decline are coherent. Phenological monitoring of spruce height growth also indicates that depletion of spring soil moisture is a critical process driven by the interaction of early warm season temperatures and precipitation. Novel biotic disturbance agents including spruce budworm, outbreaks of which are triggered by warm temperature anomalies related to its biology, and aspen leaf miner are depressing realized growth below climatically predicted levels, suggesting a pathway by which tree death is likely to occur before absolute temperature limits. As a result, insect outbreaks are degrading the otherwise strong long-term climate signal in Alaska boreal trees. However, young tree (> 40 yrs.) regeneration generally does not yet display the symptoms of acute high temperature stress. Overall, on these vulnerable sites, if temperature increases similar to the past 40 years continue, long term survival prospects are questionable because the climate conditions would be outside the limits that have historically defined the species ranges of aspen, Alaska birch, and black and white spruce.

  12. Marine bird and cetacean associations with bathymetric habitats and shallow-water topographies: implications for trophic transfer and conservation

    NASA Astrophysics Data System (ADS)

    Yen, Peggy P. W.; Sydeman, William J.; Hyrenbach, K. David

    2004-09-01

    We investigated the aggregative response of marine birds and cetaceans to bathymetric features in central California over 4 years, 1996-1997 and 2001-2002. A total of 1700 km 2 of ocean habitat was surveyed over six cruises. We considered the distribution of the most abundant marine birds and mammals in relation to bathymetry. We focused our analyses on eight focal taxa: Cassin's auklet ( Ptychoramphus aleuticus), common murre ( Uria aalge), sooty shearwater ( Puffinus grieus), phalarope species (red, and red-necked: Phalaropus fulicaria, Phalaropus lobatus), Dall's porpoise ( Phocoenoides dalli), Pacific white-sided dolphin ( Lagenorhynchus obliquidens), humpback whale ( Megaptera novaeangliae), and Risso's dolphin ( Grampus griseus). We evaluated associations of top predators with seven bathymetric indices and three distance measurements to shallow-water topographies. The bathymetric descriptors included (1) median depth, (2) depth coefficient of variation, (3) contour index, and shortest distance to (4) the mainland, (5) the continental shelf-break (200-m isobath), (6) the continental slope (1000-m isobath), and (7) pelagic waters (3000-m isobath). The measurements of shallow water topographies included the shortest distance to: (8) the Cordell Bank seamount, (9) the Farallon Island Archipelago (a breeding colony for auklets and murres), and (10) Monterey Canyon. We documented two instances of spatial autocorrelation (for Cassin's auklet and common murre) at lags (distances) of 0-3 and 3-9 km, respectively, and accounted for this spatial pattern in analyses of habitat associations. We found similar relationships between cetaceans and bathymetric features at both interannual and weekly time scales. Seabirds revealed both persistent and variable relationships through time. For the resident breeding murres, we detected an interannual trend in habitat use, with these birds shifting their distribution offshore over time. Our study demonstrates that resident and

  13. Understanding dynamics of large-scale atmospheric vortices with moist-convective shallow water model

    NASA Astrophysics Data System (ADS)

    Rostami, M.; Zeitlin, V.

    2016-08-01

    Atmospheric jets and vortices which, together with inertia-gravity waves, constitute the principal dynamical entities of large-scale atmospheric motions, are well described in the framework of one- or multi-layer rotating shallow water models, which are obtained by vertically averaging of full “primitive” equations. There is a simple and physically consistent way to include moist convection in these models by adding a relaxational parameterization of precipitation and coupling precipitation with convective fluxes with the help of moist enthalpy conservation. We recall the construction of moist-convective rotating shallow water model (mcRSW) model and give an example of application to upper-layer atmospheric vortices.

  14. A moist Boussinesq shallow water equations set for testing atmospheric models

    SciTech Connect

    Zerroukat, M. Allen, T.

    2015-06-01

    The shallow water equations have long been used as an initial test for numerical methods applied to atmospheric models with the test suite of Williamson et al. being used extensively for validating new schemes and assessing their accuracy. However the lack of physics forcing within this simplified framework often requires numerical techniques to be reworked when applied to fully three dimensional models. In this paper a novel two-dimensional shallow water equations system that retains moist processes is derived. This system is derived from three-dimensional Boussinesq approximation of the hydrostatic Euler equations where, unlike the classical shallow water set, we allow the density to vary slightly with temperature. This results in extra (or buoyancy) terms for the momentum equations, through which a two-way moist-physics dynamics feedback is achieved. The temperature and moisture variables are advected as separate tracers with sources that interact with the mean-flow through a simplified yet realistic bulk moist-thermodynamic phase-change model. This moist shallow water system provides a unique tool to assess the usually complex and highly non-linear dynamics–physics interactions in atmospheric models in a simple yet realistic way. The full non-linear shallow water equations are solved numerically on several case studies and the results suggest quite realistic interaction between the dynamics and physics and in particular the generation of cloud and rain. - Highlights: • Novel shallow water equations which retains moist processes are derived from the three-dimensional hydrostatic Boussinesq equations. • The new shallow water set can be seen as a more general one, where the classical equations are a special case of these equations. • This moist shallow water system naturally allows a feedback mechanism from the moist physics increments to the momentum via buoyancy. • Like full models, temperature and moistures are advected as tracers that interact

  15. Three-dimensional mapping of evolving internal waves during the Shallow Water 2006 experiment.

    PubMed

    Badiey, Mohsen; Wan, Lin; Song, Aijun

    2013-07-01

    Detailed knowledge of sound speed profiles and the sound speed profile's spatial and temporal variability resulting from internal waves (IWs) are indispensable to investigating significant acoustic field fluctuations in shallow water. A strategy to obtain a time-varying, three-dimensional (3D) IW temperature field is presented. It uses two types of simultaneous measurements: dense observations from a farm of thermistor strings and IW surface expressions from a ship-based radar. Using data from the Shallow Water 2006 experiment, the temperature field, over multiple kilometers in range, was reconstructed and, fed to a 3D acoustic model to demonstrate IW impacts on acoustic propagation. PMID:23862909

  16. Three-dimensional mapping of evolving internal waves during the Shallow Water 2006 experiment.

    PubMed

    Badiey, Mohsen; Wan, Lin; Song, Aijun

    2013-07-01

    Detailed knowledge of sound speed profiles and the sound speed profile's spatial and temporal variability resulting from internal waves (IWs) are indispensable to investigating significant acoustic field fluctuations in shallow water. A strategy to obtain a time-varying, three-dimensional (3D) IW temperature field is presented. It uses two types of simultaneous measurements: dense observations from a farm of thermistor strings and IW surface expressions from a ship-based radar. Using data from the Shallow Water 2006 experiment, the temperature field, over multiple kilometers in range, was reconstructed and, fed to a 3D acoustic model to demonstrate IW impacts on acoustic propagation.

  17. Frequency dependence and intensity fluctuations due to shallow water internal waves.

    PubMed

    Badiey, Mohsen; Katsnelson, Boris G; Lynch, James F; Pereselkov, Serguey

    2007-08-01

    A theory and experimental results for sound propagation through an anisotropic shallow water environment are presented to examine the frequency dependence of the scintillation index in the presence of internal waves. The theory of horizontal rays and vertical modes is used to establish the azimutal and frequency behavior of the sound intensity fluctuations, specifically for shallow water broadband acoustic signals propagating through internal waves. This theory is then used to examine the frequency dependent, anisotropic acoustic field measured during the SWARM'95 experiment. The frequency dependent modal scintillation index is described for the frequency range of 30-200 Hz on the New Jersey continental shelf.

  18. Preliminary results from a shallow water benthic grazing study

    USGS Publications Warehouse

    Jones, N.L.; Monismith, Stephen G.; Thompson, Janet K.

    2005-01-01

    Despite great improvements in our knowledge on the effects of benthic grazers on seston concentrations in water columns, the effects of different hydrodynamic conditions on grazing rates has not been formulated. This makes it difficult to assess the system-wide effect of the benthic ecosystem on phytoplankton concentrations. Furthermore, it affects our ability to predict the potential success of a benthic species, such as the invasive clams Corbicula fluminea and Potamocorbula amurensis. This paper presents the preliminary results of a control volume approach to elucidate the effect of different hydrodynamic conditions on the grazing rates of Corbicula fluminea.

  19. Deposition of shallow water sponges in response to seasonal changes

    NASA Astrophysics Data System (ADS)

    Ávila, Enrique; Carballo, José Luis; Vega, Cristina; Camacho, Leonardo; Barrón-Álvarez, José J.; Padilla-Verdín, Claudia; Yáñez-Chávez, Benjamín

    2011-08-01

    Removal of organisms from the subtidal zone plays an important role in shaping benthic communities in shallow bays. The main objective of this research was to quantify the biomass of sponges washed up on the beach at Mazatlan Bay (Mexico, eastern Pacific Ocean), and to determine its relationship with local weather and oceanographic conditions. To know whether this process has a significant effect on the sponge populations, changes in abundance of the species washed into the beach were also quantified in adjoining sublittoral areas. The sponges that were washed ashore were mainly branching ( Mycale ramulosa), massive ( Haliclona caerulea) and cushion-shaped ( Callyspongia californica) species. Species with high content of spongin in their structure (e.g. Hyattella intestinalis) were common in the subtidal zone but were rarely found on the beach. Encrusting species were never found. Four-year data of sponge deposition on the beach showed that the total annual sponge biomass ranged from 30 to 60 g DW m - 2 with an inter-annual range from 0.1 to 17.3 g DW m - 2 . The highest deposition of sponges was during the spring-summer transition (from April to July), which was associated with a change in wind direction (from NW to WSW). This change also matched with low tides and a high resuspension of bottom sediments, suggesting a high-energy environment during this transition. The increase in sponge biomass washed on the beach coincided with a decrease in the density of adjacent sponge populations. A multiple regression analysis showed that 68.48% of the variation on sponge biomass on the beach could be statistically explained using a combination of environmental factors (wind speed, sediment resuspension and tides). Thus, seasonal changes in wind direction combined with the effect of low tides and sediment resuspension could serve to predict fragmentation/detachment events of benthic organisms in shallow sublittoral areas worldwide. This study also provides insights to

  20. Geostatistical investigation into the temporal evolution of spatial structure in a shallow water table

    NASA Astrophysics Data System (ADS)

    Lyon, S. W.; Seibert, J.; Lembo, A. J.; Walter, M. T.; Steenhuis, T. S.

    2006-02-01

    Shallow water tables near-streams often lead to saturated, overland flow generating areas in catchments in humid climates. While these saturated areas are assumed to be principal biogeochemical hot-spots and important for issues such as non-point pollution sources, the spatial and temporal behavior of shallow water tables, and associated saturated areas, is not completely understood. This study demonstrates how geostatistical methods can be used to characterize the spatial and temporal variation of the shallow water table for the near-stream region. Event-based and seasonal changes in the spatial structure of the shallow water table, which influences the spatial pattern of surface saturation and related runoff generation, can be identified and used in conjunction to characterize the hydrology of an area. This is accomplished through semivariogram analysis and indicator kriging to produce maps combining soft data (i.e., proxy information to the variable of interest) representing general shallow water table patterns with hard data (i.e., actual measurements) that represent variation in the spatial structure of the shallow water table per rainfall event. The area used was a hillslope in the Catskill Mountains region of New York State. The shallow water table was monitored for a 120 m×180 m near-stream region at 44 sampling locations on 15-min intervals. Outflow of the area was measured at the same time interval. These data were analyzed at a short time interval (15 min) and at a long time interval (months) to characterize the changes in the hydrologic behavior of the hillslope. Indicator semivariograms based on binary-transformed ground water table data (i.e., 1 if exceeding the time-variable median depth to water table and 0 if not) were created for both short and long time intervals. For the short time interval, the indicator semivariograms showed a high degree of spatial structure in the shallow water table for the spring, with increased range during many rain

  1. Comparison of shallow water table depth algorithms used in SWAT2005

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The fluctuation of the shallow water table depth (WTD) is important for planning drainage systems at the plot-, field-, and watershed-scale because its proximity to the ground surface impacts farm machine trafficability, crop development, agricultural chemical transport, soil salinity, and drainage....

  2. Incorporation of a new shallow water table depth algorithm into SWAT 2005

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The fluctuation of the shallow water table depth (WTD) is important for planning drainage systems at the plot-, field-, and watershed-scale because its proximity to the surface impacts farm machine trafficability, crop development, agricultural chemical transport, soil salinity, and drainage. Theref...

  3. NONLINEAR EVOLUTION OF GLOBAL HYDRODYNAMIC SHALLOW-WATER INSTABILITY IN THE SOLAR TACHOCLINE

    SciTech Connect

    Dikpati, Mausumi

    2012-02-01

    We present a fully nonlinear hydrodynamic 'shallow-water' model of the solar tachocline. The model consists of a global spherical shell of differentially rotating fluid, which has a deformable top, thus allowing motions in radial directions along with latitudinal and longitudinal directions. When the system is perturbed, in the course of its nonlinear evolution it can generate unstable low-frequency shallow-water shear modes from the differential rotation, high-frequency gravity waves, and their interactions. Radiative and overshoot tachoclines are characterized in this model by high and low effective gravity values, respectively. Building a semi-implicit spectral scheme containing very low numerical diffusion, we perform nonlinear evolution of shallow-water modes. Our first results show that (1) high-latitude jets or polar spin-up occurs due to nonlinear evolution of unstable hydrodynamic shallow-water disturbances and differential rotation, (2) Reynolds stresses in the disturbances together with changing shell thickness and meridional flow are responsible for the evolution of differential rotation, (3) disturbance energy primarily remains concentrated in the lowest longitudinal wavenumbers, (4) an oscillation in energy between perturbed and unperturbed states occurs due to evolution of these modes in a nearly dissipation-free system, and (5) disturbances are geostrophic, but occasional nonadjustment in geostrophic balance can occur, particularly in the case of high effective gravity, leading to generation of gravity waves. We also find that a linearly stable differential rotation profile remains nonlinearly stable.

  4. Evaluation of 2D shallow-water model for spillway flow with a complex geometry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Although the two-dimensional (2D) shallow water model is formulated based on several assumptions such as hydrostatic pressure distribution and vertical velocity is negligible, as a simple alternative to the complex 3D model, it has been used to compute water flows in which these assumptions may be ...

  5. Performance analysis of a LDPC coded OFDM communication system in shallow water acoustic channels

    NASA Astrophysics Data System (ADS)

    Liu, Shengxing; Xu, Xiaomei

    2012-11-01

    Time-varying significant multipath interference is the major obstacle to reliable data communication in shallow water acoustic channels. In this paper, the performance of a low density parity check (LDPC) coded orthogonal frequency division multiplexing (OFDM) communication system is investigated for these channels. The initial message for LDPC, decoded by using the belief propagation (BP) algorithm, is deduced for OFDM underwater acoustic channels; based on this deduction, the noise thresholds of regular LDPC codes with different code rates are obtained by using the density evolution algorithm. Furthermore, a communication system model, developed with LDPC code, OFDM and channel interleaver for shallow water acoustic channels, is introduced. The effect of modulation and coding schemes on the LDPC codes performance is investigated by simulation. The results show that the system can achieve remarkable performance in shallow water acoustic channels, and the performance improves with increasing code length and decreasing code rate. The bit error rate (BER) of the system, under conditions with QPSK modulation, 1280-code length and 1/2-code rate, is less than 10-5 when the signal to noise ratio (SNR) is greater than 6.8dB. These values are obtained for a five-path shallow water acoustic channel of Xiamen harbor.

  6. Metabolic and Cardiovascular Response to Shallow Water Exercise in Young and Older Women.

    ERIC Educational Resources Information Center

    Campbell, Jennifer A.; D'Acquisto, Leo J.; D'Acquisto, Debra M.; Cline, Michael G.

    2003-01-01

    Compared the metabolic and cardiovascular responses of young and older women while performing shallow water exercise (SWE). Overall, SWE elicited metabolic and cardiovascular responses that met American College of Sports Medicine's guidelines for establishing health benefits. Older females self-selected a greater relative exercise intensity during…

  7. Higher Order Corrections for Shallow-Water Solitary Waves: Elementary Derivation and Experiments

    ERIC Educational Resources Information Center

    Halasz, Gabor B.

    2009-01-01

    We present an elementary method to obtain the equations of the shallow-water solitary waves in different orders of approximation. The first two of these equations are solved to get the shapes and propagation velocities of the corresponding solitary waves. The first-order equation is shown to be equivalent to the Korteweg-de Vries (KdV) equation,…

  8. SWIM: A Semi-Analytical Ocean Color Inversion Algorithm for Optically Shallow Waters

    NASA Technical Reports Server (NTRS)

    McKinna, Lachlan I. W.; Werdell, P. Jeremy; Fearns, Peter R. C. S.; Weeks, Scarla J.; Reichstetter, Martina; Franz, Bryan A.; Shea, Donald M.; Feldman, Gene C.

    2014-01-01

    Ocean color remote sensing provides synoptic-scale, near-daily observations of marine inherent optical properties (IOPs). Whilst contemporary ocean color algorithms are known to perform well in deep oceanic waters, they have difficulty operating in optically clear, shallow marine environments where light reflected from the seafloor contributes to the water-leaving radiance. The effect of benthic reflectance in optically shallow waters is known to adversely affect algorithms developed for optically deep waters [1, 2]. Whilst adapted versions of optically deep ocean color algorithms have been applied to optically shallow regions with reasonable success [3], there is presently no approach that directly corrects for bottom reflectance using existing knowledge of bathymetry and benthic albedo.To address the issue of optically shallow waters, we have developed a semi-analytical ocean color inversion algorithm: the Shallow Water Inversion Model (SWIM). SWIM uses existing bathymetry and a derived benthic albedo map to correct for bottom reflectance using the semi-analytical model of Lee et al [4]. The algorithm was incorporated into the NASA Ocean Biology Processing Groups L2GEN program and tested in optically shallow waters of the Great Barrier Reef, Australia. In-lieu of readily available in situ matchup data, we present a comparison between SWIM and two contemporary ocean color algorithms, the Generalized Inherent Optical Property Algorithm (GIOP) and the Quasi-Analytical Algorithm (QAA).

  9. Temporal sound field fluctuations in the presence of internal solitary waves in shallow water.

    PubMed

    Katsnelson, Boris G; Grigorev, Valery; Badiey, Mohsen; Lynch, James F

    2009-07-01

    Temporal variations of intensity fluctuations are presented from the SWARM95 experiment. It is hypothesized that specific features of these fluctuations can be explained by mode coupling due to the presence of an internal soliton moving approximately along the acoustic track. Estimates are presented in conjunction with theoretical consideration of the shallow water waveguide.

  10. Shallow-water reef ophiuroids (Echinodermata: Ophiuroidea) of Réunion (Mascarene Islands), with biogeographic considerations.

    PubMed

    Boissin, Emilie; Hoareau, Thierry B; Paulay, Gustav; Bruggemann, J Henrich

    2016-01-01

    Despite their importance in marine biodiversity, invertebrates are far less studied than vertebrates. Given the current global biodiversity crisis and insufficient taxonomic resources, sustained efforts need to be undertaken to assess species diversity, especially in the highly threatened 'biodiversity hotspots'. Réunion is a young volcanic island lying in the Mascarene Islands (south-western Indian Ocean, SWIO), a marine biodiversity hotspot. A substantial sampling effort was conducted around Réunion Island to document shallow water reef-associated ophiuroid (brittle-stars) diversity, a class recognised as the most diverse among echinoderms. A total of 33 species were documented, increasing the known species richness of the island by 56%. Findings include 15 new records for Réunion, 11 for the Mascarene Islands and 8 for the Indian Ocean. The most diverse family was Ophiocomidae, a family of large, abundant and conspicuous tropical species. Even in this well studied family, a new species was revealed by this survey. Morphological variants together with DNA sequence variations within several species revealed cryptic species. We compared our results with the known fauna of other Mascarene Islands and discuss biogeographic implications for the region. PMID:27394586

  11. Shallow-water reef ophiuroids (Echinodermata: Ophiuroidea) of Réunion (Mascarene Islands), with biogeographic considerations.

    PubMed

    Boissin, Emilie; Hoareau, Thierry B; Paulay, Gustav; Bruggemann, J Henrich

    2016-04-06

    Despite their importance in marine biodiversity, invertebrates are far less studied than vertebrates. Given the current global biodiversity crisis and insufficient taxonomic resources, sustained efforts need to be undertaken to assess species diversity, especially in the highly threatened 'biodiversity hotspots'. Réunion is a young volcanic island lying in the Mascarene Islands (south-western Indian Ocean, SWIO), a marine biodiversity hotspot. A substantial sampling effort was conducted around Réunion Island to document shallow water reef-associated ophiuroid (brittle-stars) diversity, a class recognised as the most diverse among echinoderms. A total of 33 species were documented, increasing the known species richness of the island by 56%. Findings include 15 new records for Réunion, 11 for the Mascarene Islands and 8 for the Indian Ocean. The most diverse family was Ophiocomidae, a family of large, abundant and conspicuous tropical species. Even in this well studied family, a new species was revealed by this survey. Morphological variants together with DNA sequence variations within several species revealed cryptic species. We compared our results with the known fauna of other Mascarene Islands and discuss biogeographic implications for the region.

  12. Geostatistical investigation into the temporal evolution of spatial structure in a shallow water table

    NASA Astrophysics Data System (ADS)

    Lyon, S. W.; Seibert, J.; Lembo, A. J.; Walter, M. T.; Steenhuis, T. S.

    2005-08-01

    Shallow water tables in the near-stream region often lead to saturated areas in catchments in humid climates. While these saturated areas are assumed to be of importance for issues such as non-point pollution sources, little is known about the spatial and temporal behavior of shallow water tables and the resulting saturated areas. In this study, geostatistical methods are employed demonstrating their utility in investigating the spatial and temporal variation of the shallow water table for the near-stream region. Event-based and seasonal changes in the spatial structure of the shallow water table, which directly influences surface saturation and runoff generation, can be identified and used in conjunction to characterize the hydrology of an area. This is accomplished through semivariogram analysis and indicator kriging to produce maps combining supplemental soft data (i.e., proxy information to the variable of interest) representing seasonal trends in the shallow water table with hard data (i.e., the actual measurements) that represent variation in the spatial structure of the shallow water table per rainfall event. The area used was a hillslope located in the Catskill Mountains region of New York State. The shallow water table was monitored for a 120 m×180 m near-stream region at 44 sampling locations on 15-min intervals. Outflow of the area was measured at the same time interval. These data were analyzed at a short time interval (15 min) and at a long time interval (months) to characterize the changes in the hydrology of the region. Indicator semivariograms based on transforming the depth to ground water table data into binary values (i.e., 1 if exceeding the time-variable median depth to water table and 0 if not) were created for both time interval lengths. When considering only the short time interval, the indicator semivariograms for spring when there is excess rainfall show high spatial structure with increased ranges during rain events with surface

  13. Exploring a multi-resolution modeling approach within the shallow-water equations

    SciTech Connect

    Ringler, Todd; Jacobsen, Doug; Gunzburger, Max; Ju, Lili; Duda, Michael; Skamarock, William

    2011-01-01

    The ability to solve the global shallow-water equations with a conforming, variable-resolution mesh is evaluated using standard shallow-water test cases. While the long-term motivation for this study is the creation of a global climate modeling framework capable of resolving different spatial and temporal scales in different regions, the process begins with an analysis of the shallow-water system in order to better understand the strengths and weaknesses of the approach developed herein. The multiresolution meshes are spherical centroidal Voronoi tessellations where a single, user-supplied density function determines the region(s) of fine- and coarsemesh resolution. The shallow-water system is explored with a suite of meshes ranging from quasi-uniform resolution meshes, where the grid spacing is globally uniform, to highly variable resolution meshes, where the grid spacing varies by a factor of 16 between the fine and coarse regions. The potential vorticity is found to be conserved to within machine precision and the total available energy is conserved to within a time-truncation error. This result holds for the full suite of meshes, ranging from quasi-uniform resolution and highly variable resolution meshes. Based on shallow-water test cases 2 and 5, the primary conclusion of this study is that solution error is controlled primarily by the grid resolution in the coarsest part of the model domain. This conclusion is consistent with results obtained by others.When these variable-resolution meshes are used for the simulation of an unstable zonal jet, the core features of the growing instability are found to be largely unchanged as the variation in the mesh resolution increases. The main differences between the simulations occur outside the region of mesh refinement and these differences are attributed to the additional truncation error that accompanies increases in grid spacing. Overall, the results demonstrate support for this approach as a path toward

  14. A new genus and species of Thyasiridae (Mollusca, Bivalvia) from deep-water, Beaufort Sea, northern Alaska

    PubMed Central

    Valentich-Scott, Paul; Powell, Charles L.; II; Lorenson, Thomas D.; Edwards, Brian E.

    2014-01-01

    Abstract Bivalve mollusk shells were collected in 2350 m depth in the Beaufort Sea, Arctic Ocean off northern Alaska. Initial identification suggested the specimens were a member of the bivalve family Thyasiridae, but no known eastern Pacific or Arctic living or fossil thyasirid resembled these deep-water specimens. Comparisons were made with the type of the genera Maorithyas Fleming, 1950, Spinaxinus Oliver & Holmes, 2006, Axinus Sowerby, 1821, and Parathyasira Iredale, 1930. We determined the Beaufort Sea species represents a new genus, herein described as Wallerconcha. These specimens also represent a new species, herein named Wallerconcha sarae. These new taxa are compared with known modern and fossil genera and species of thyasirds. PMID:25589851

  15. Diversity and phylogenetic analyses of bacteria from a shallow-water hydrothermal vent in Milos island (Greece)

    PubMed Central

    Giovannelli, Donato; d'Errico, Giuseppe; Manini, Elena; Yakimov, Michail; Vetriani, Costantino

    2013-01-01

    Studies of shallow-water hydrothermal vents have been lagging behind their deep-sea counterparts. Hence, the importance of these systems and their contribution to the local and regional diversity and biogeochemistry is unclear. This study analyzes the bacterial community along a transect at the shallow-water hydrothermal vent system of Milos island, Greece. The abundance and biomass of the prokaryotic community is comparable to areas not affected by hydrothermal activity and was, on average, 1.34 × 108 cells g−1. The abundance, biomass and diversity of the prokaryotic community increased with the distance from the center of the vent and appeared to be controlled by the temperature gradient rather than the trophic conditions. The retrieved 16S rRNA gene fragments matched sequences from a variety of geothermal environments, although the average similarity was low (94%), revealing previously undiscovered taxa. Epsilonproteobacteria constituted the majority of the population along the transect, with an average contribution to the total diversity of 60%. The larger cluster of 16S rRNA gene sequences was related to chemolithoautotrophic Sulfurovum spp., an Epsilonproteobacterium so far detected only at deep-sea hydrothermal vents. The presence of previously unknown lineages of Epsilonproteobacteria could be related to the abundance of organic matter in these systems, which may support alternative metabolic strategies to chemolithoautotrophy. The relative contribution of Gammaproteobacteria to the Milos microbial community increased along the transect as the distance from the center of the vent increased. Further attempts to isolate key species from these ecosystems will be critical to shed light on their evolution and ecology. PMID:23847607

  16. Diversity and phylogenetic analyses of bacteria from a shallow-water hydrothermal vent in Milos island (Greece).

    PubMed

    Giovannelli, Donato; d'Errico, Giuseppe; Manini, Elena; Yakimov, Michail; Vetriani, Costantino

    2013-01-01

    Studies of shallow-water hydrothermal vents have been lagging behind their deep-sea counterparts. Hence, the importance of these systems and their contribution to the local and regional diversity and biogeochemistry is unclear. This study analyzes the bacterial community along a transect at the shallow-water hydrothermal vent system of Milos island, Greece. The abundance and biomass of the prokaryotic community is comparable to areas not affected by hydrothermal activity and was, on average, 1.34 × 10(8) cells g(-1). The abundance, biomass and diversity of the prokaryotic community increased with the distance from the center of the vent and appeared to be controlled by the temperature gradient rather than the trophic conditions. The retrieved 16S rRNA gene fragments matched sequences from a variety of geothermal environments, although the average similarity was low (94%), revealing previously undiscovered taxa. Epsilonproteobacteria constituted the majority of the population along the transect, with an average contribution to the total diversity of 60%. The larger cluster of 16S rRNA gene sequences was related to chemolithoautotrophic Sulfurovum spp., an Epsilonproteobacterium so far detected only at deep-sea hydrothermal vents. The presence of previously unknown lineages of Epsilonproteobacteria could be related to the abundance of organic matter in these systems, which may support alternative metabolic strategies to chemolithoautotrophy. The relative contribution of Gammaproteobacteria to the Milos microbial community increased along the transect as the distance from the center of the vent increased. Further attempts to isolate key species from these ecosystems will be critical to shed light on their evolution and ecology.

  17. Atlas of Relations Between Climatic Parameters and Distributions of Important Trees and Shrubs in North America - Alaska Species and Ecoregions

    USGS Publications Warehouse

    Thompson, Robert S.; Anderson, Katherine H.; Strickland, Laura E.; Shafer, Sarah L.; Pelltier, Richard T.; Bartlein, Patrick J.

    2006-01-01

    Climate is the primary factor in controlling the continental-scale distribution of plant species, although the relations between climatic parameters and species' ranges is only now beginning to be quantified. Preceding volumes of this atlas explored the continental-scale relations between climatic parameters and the distributions of woody plant species across all of the continent of North America. This volume presents similar information for important woody species, groups of species, and ecoregions in more detail for the State of Alaska. For these analyses, we constructed a 25-kilometer equal-area grid of modern climatic and bioclimatic parameters for North America from instrumental weather records. We obtained a digital representation of the geographic distribution of each species or ecoregion, either from a published source or by digitizing the published distributions ourselves. The presence or absence of each species or ecoregion was then determined for each point on the 25-kilometer grid, thus providing a basis for comparison of the climatic data with the geographic distribution of each species or ecoregion. The relations between climate and these distributions are presented in graphical and tabular form.

  18. Shallow water heterobranch sea slugs (Gastropoda: Heterobranchia) from the Región de Atacama, northern Chile

    PubMed Central

    Valdés, Ángel

    2016-01-01

    The coast of northern Chile has been sparsely studied in regards to its invertebrate fauna, with just a few works reviewing the distribution of local mollusks. This work presents a survey of the shallow water heterobranch sea slugs currently occurring around the port of Caldera (27 °S), in the Región de Atacama, northern Chile. Eight species of sea slugs were found in this study: Aplysiopsis cf. brattstroemi (Marcus, 1959), Baptodoris peruviana (d’Orbigny, 1837), Diaulula variolata (d’Orbigny, 1837), Doris fontainii d’Orbigny, 1837, Onchidella marginata (Couthouy in Gould, 1852), Phidiana lottini (Lesson, 1831), Tyrinna delicata (Abraham, 1877) and the new species Berthella schroedli sp. nov., described herein. All of the species found in the area are endemic to South America, having distributions in the southeastern Pacific and South Atlantic Oceans, from Ancash, Perú to Peninsula Valdés, Argentina, and two of them represent species which are endemic to the Chilean coasts (Aplysiopsis cf. brattstroemi and Berthella schroedli). The finding of a previously undescribed species emphasizes the need of further surveys, particularly in subtidal and deeper waters, in order to improve the knowledge on this neglected fauna in Atacama. PMID:27168975

  19. Shallow Water Hydrothermal Vents in the Gulf of California: Natural Laboratories for Multidisciplinary Research

    NASA Astrophysics Data System (ADS)

    Forrest, M.; Hilton, D. R.; Price, R. E.; Kulongoski, J. T.

    2015-12-01

    Modern and fossil examples of shallow water submarine hydrothermal vents occur throughout the Gulf of California. These sites offer important information about the processes involved in the extensional tectonics that created the Gulf of California and continue to shape the region to this day. Due to their accessibility, shallow water marine hydrothermal vents are far easier to access and study than their deeper analogs, and these settings can provide natural laboratories to study biogeochemical processes. Certain biogeochemical and biomineralizing processes occurring at shallow vents are very similar to those observed around deep-sea hydrothermal vents. In some cases, authigenic carbonates form around shallow vents. However, the hydrothermal precipitates are generally composed of Fe-oxyhydroxides, Mn-oxides, opal, calcite, pyrite and cinnabar, and their textural and morphological characteristics suggest microbial mediation for mineral deposition. Modern shallow-water hydrothermal vents also support complex biotic communities, characterized by the coexistence of chemosynthetic and photosynthetic organisms. These shallow vents are highly productive and provide valuable resources to local fishermen. Extant shallow water hydrothermal activity has been studied in Bahía Concepción, San Felipe, Punta Estrella, El Coloradito, Puertecitos, and around the Islas Encantadas. Discrete streams of gas bubbles are often discharged along with hot liquids at shallow water vents. The vent liquids generally exhibit lower salinities than seawater, and their isotopic compositions indicate that they contain meteoric water mixed with seawater. The composition of the shallow vent gas is primarily made up of CO2, but may also be enriched in N2, H2S, CH4, and other higher hydrocarbons. The geochemistry of these gases can be informative in determining the sources and processes involved in their generation. In particular, 3He/4He ratios may provide valuable information about the origin of

  20. Early life history pelagic exposure profiles of selected commercially important fish species in the Gulf of Alaska

    NASA Astrophysics Data System (ADS)

    Doyle, Miriam J.; Mier, Kathryn L.

    2016-10-01

    A synthesis of nearly four decades of ichthyoplankton survey data from the Gulf of Alaska was undertaken to provide the most comprehensive information available on the early life history ecology of five focal species: Pacific Cod (Gadus macrocephalus), Walleye Pollock (Gadus chalcogrammus), Pacific Ocean Perch (Sebastes alutus), Sablefish (Anoplopoma fimbria), and Arrowtooth Flounder (Atheresthes stomias). This analysis of historical data, along with information from published studies, is presented here in the form of ecological reviews of the species during their planktonic phase. The reviews include descriptions of temporal and spatial patterns of exposure to the environment, and interpretation regarding associated sensitivities to environmental forcing. On a temporal scale, patterns in abundance of eggs and larvae are synthesized that characterize seasonal exposure to the pelagic environment, and interannual variation that is presumed to incorporate responses to long-term environmental forcing. Spatial patterns are synthesized to identify horizontal and vertical extent of egg and larval distributions, delineate areas of primary larval habitat, and illuminate egg and larval drift pathways. The observed patterns are discussed with respect to characterizing species early life history strategies, identifying long-term adaptations to the Gulf of Alaska environment, and associated resilience and vulnerability factors that may modulate early life responses to environmental forcing in this region. For each species, gaps in knowledge are identified and are concerned primarily with the period of transition between the larval and juvenile stage, and feeding habits and ecology across seasons, habitats and sub-intervals of early ontogeny. These early life history reviews advance our ecological understanding of the pelagic phase, and fine-tune our focus for the investigation of potential response mechanisms to environmental forcing at appropriate, species-specific temporal

  1. Unexpectedly high diversity of Monoporella (Bryozoa: Cheilostomata) in the Aleutian Islands, Alaska: taxonomy and distribution of six new species.

    PubMed

    Dick, Matthew H

    2008-01-01

    The cheilostome bryozoan genus Monoporella is poorly resolved taxonomically; only four Recent species have been formally described, though several undescribed species have been reported in the literature. The literature indicates no more than five species in the genus occurring in any local region of the world, with one to three species in most regions where the genus has been reported. I examined bryozoans from 52 trawl catches in the western and western-central Aleutian Islands, Alaska, and found specimens of Monoporella in 12 of these samples. Study of these specimens by scanning electron microscopy (SEM) revealed six new species that are described herein: M. flexibila, M. elongata, M. gigantea, M. ellefsoni, M. seastormi, and M. aleutica. Two of the species have erect colony morphologies, a condition not previously reported in Monoporella. The species diversity of Monoporella appears to be greater in the Aleutians than in any other part of the world adequately surveyed. I discuss whether this apparent high diversity is an artifact due to insufficient sampling in the deep shelf zone, and present two hypotheses to explain this high diversity should it prove not to be an artifact: 1) the present high local diversity represents a relict of past high diversity occurring broadly around the North Pacific rim; and 2) a local radiation of Monoporella occurred in the Aleutian archipelago.

  2. Bottom depth and type for shallow waters: Hyperspectral observations from a blimp

    SciTech Connect

    Lee, ZhongPing; Carder, K.; Steward, R.

    1997-08-01

    In a study of a blimp transect over Tampa Bay (Florida), hyperspectral upwelling radiance over the sand and seagrass bottoms was measured. These measurements were converted to hyperspectral remote-sensing reflectances. Using a shallow-water remote-sensing-reflectance model, in-water optical properties, bottom depths and bottom albedos were derived analytically and simultaneously by an optimization procedure. In the process, curvatures of sand and seagrass albedos were used. Also used was a model of absorption spectrum of phytoplankton pigments. The derived bottom depths were compared with bathymetry charts and found to agree well. This study suggests that a low-flying blimp is a useful platform for the study and mapping of coastal water environments. The optical model as well as the data-reduction procedure used are practical for the retrieval of shallow water optical properties.

  3. Theoretical and numerical stability analysis of the liquid metal pinch using the shallow water approximation

    NASA Astrophysics Data System (ADS)

    Zienicke, E.; Li, Ben-Wen; Thess, A.; Kräzschmar, A.; Terhoeven, P.

    2008-09-01

    The pinch instability for a cylindrical jet of liquid metal passed through by an axial electrical current is investigated. Besides the pinch effect originating from surface tension, the Lorentz force, created by the axial current density and the corresponding azimuthal magnetic field, causes an electromagnetic pinch effect. This effect has drawn attention in electrical engineering, because it can be used in the construction of liquid metal current limiters with self-healing properties. In this paper a simple model is derived using the shallow water approximation: the equations describing the full system are reduced to two one-dimensional evolution equations for the axial velocity and the radius of the jet. A stability analysis for this reduced system is carried out yielding critical current density and the growth rate for the instability. To investigate the nonlinear behaviour of the pinch instability for finite perturbations simulations, the shallow water model are performed.

  4. Algorithmically scalable block preconditioner for fully implicit shallow-water equations in CAM-SE

    DOE PAGES

    Lott, P. Aaron; Woodward, Carol S.; Evans, Katherine J.

    2014-10-19

    Performing accurate and efficient numerical simulation of global atmospheric climate models is challenging due to the disparate length and time scales over which physical processes interact. Implicit solvers enable the physical system to be integrated with a time step commensurate with processes being studied. The dominant cost of an implicit time step is the ancillary linear system solves, so we have developed a preconditioner aimed at improving the efficiency of these linear system solves. Our preconditioner is based on an approximate block factorization of the linearized shallow-water equations and has been implemented within the spectral element dynamical core within themore » Community Atmospheric Model (CAM-SE). Furthermore, in this paper we discuss the development and scalability of the preconditioner for a suite of test cases with the implicit shallow-water solver within CAM-SE.« less

  5. A modified Rusanov scheme for shallow water equations with topography and two phase flows

    NASA Astrophysics Data System (ADS)

    Mohamed, Kamel; Benkhaldoun, F.

    2016-06-01

    In this work, we introduce a finite volume method for numerical simulation of shallow water equations with source terms in one and two space dimensions, and one-pressure model of two-phase flows in one space dimension. The proposed method is composed of two steps. The first, called predictor step, depends on a local parameter allowing to control the numerical diffusion. A strategy based on limiters theory enables to control this parameter. The second step recovers the conservation equation. The scheme can thus be turned to order 1 in the regions where the flow has a strong variation, and order 2 in the regions where the flow is regular. The numerical scheme is applied to several test cases in one and two space dimensions. This scheme demonstrates its well-balanced property, and that it is an efficient and accurate approach for solving shallow water equations with and without source terms, and water faucet problem.

  6. The lantern shark's light switch: turning shallow water crypsis into midwater camouflage.

    PubMed

    Claes, Julien M; Mallefet, Jérôme

    2010-10-23

    Bioluminescence is a common feature in the permanent darkness of the deep-sea. In fishes, light is emitted by organs containing either photogenic cells (intrinsic photophores), which are under direct nervous control, or symbiotic luminous bacteria (symbiotic photophores), whose light is controlled by secondary means such as mechanical occlusion or physiological suppression. The intrinsic photophores of the lantern shark Etmopterus spinax were recently shown as an exception to this rule since they appear to be under hormonal control. Here, we show that hormones operate what amounts to a unique light switch, by acting on a chromatophore iris, which regulates light emission by pigment translocation. This result strongly suggests that this shark's luminescence control originates from the mechanism for physiological colour change found in shallow water sharks that also involves hormonally controlled chromatophores: the lantern shark would have turned the initial shallow water crypsis mechanism into a midwater luminous camouflage, more efficient in the deep-sea environment.

  7. Explicit large time-step schemes for the shallow water equations

    NASA Technical Reports Server (NTRS)

    Turkel, E.; Zwas, G.

    1979-01-01

    Modifications to explicit finite difference schemes for solving the shallow water equations for meteorological applications by increasing the time step for the fast gravity waves are analyzed. Terms associated with the gravity waves in the shallow water equations are treated on a coarser grid than those associated with the slow Rossby waves, which contain much more of the available energy and must be treated with higher accuracy, enabling a several-fold increase in time step without degrading the accuracy of the solution. The method is presented in Cartesian and spherical coordinates for a rotating earth, using generalized leapfrog, frozen coefficient, and Fourier filtering finite difference schemes. Computational results verify the numerical stability of the approach.

  8. Energy and Potential Enstrophy Conserving Scheme for the Rotating Shallow Water Equations on an Arbitrary Grid

    NASA Astrophysics Data System (ADS)

    Eldred, C.; Randall, D. A.

    2014-12-01

    The shallow water equations provide a useful analogue of fully compressible Euler equations since they have similar conservation laws, many of the same types of waves and a similar (quasi-) balanced state. With regards to conservation properties, there have been two major thrusts of research: Hamiltonian methods (work done by Salmon and Dubos, primarily) and Discrete Exterior Calculus (DEC; Thuburn, Cotter, Ringler, etc.). In particular, recent work done by Thuburn and Cotter (2011) introduced a generalized framework for energy-conservative C-grid discretizations of the rotating shallow water equation using ideas from Discrete Exterior Calculus. The current research elucidates the connections between the Hamiltonian and DEC approaches, and looks at potential enstrophy conservation in addition to total energy conservation. As an illustration of this approach, an extension of the Arakawa and Lamb 1981 total energy and potential enstrophy conserving scheme to arbitrary, non-orthogonal polygonal grids is made.

  9. Shock capturing data assimilation algorithm for 1D shallow water equations

    NASA Astrophysics Data System (ADS)

    Tirupathi, Seshu; Tchrakian, Tigran T.; Zhuk, Sergiy; McKenna, Sean

    2016-02-01

    We propose a new data assimilation algorithm for shallow water equations in one dimension. The algorithm is based upon Discontinuous Galerkin spatial discretization of shallow water equations (DG-SW model) and the continuous formulation of the minimax filter. The latter allows for construction of a robust estimation of the state of the DG-SW model and computes worst-case bounds for the estimation error, provided the uncertain parameters belong to a given bounding set. Numerical studies show that, given sparse observations from numerical or physical experiments, the proposed algorithm quickly reconstructs the true solution even in the presence of shocks, rarefaction waves and unknown values of model parameters. The minimax filter is compared against the ensemble Kalman filter (EnKF) for a benchmark dam-break problem and the results show that the minimax filter converges faster to the true solution for sparse observations.

  10. Shallow-water seismoacoustic noise generated by tropical storms Ernesto and Florence.

    PubMed

    Traer, James; Gerstoft, Peter; Bromirski, Peter D; Hodgkiss, William S; Brooks, Laura A

    2008-09-01

    Land-based seismic observations of double frequency (DF) microseisms generated during tropical storms Ernesto and Florence are dominated by signals in the 0.15-0.5 Hz band. In contrast, data from sea floor hydrophones in shallow water (70 m depth, 130 km off the New Jersey coast) show dominant signals in the ocean gravity-wave frequency band, 0.02-0.18 Hz, and low amplitudes from 0.18 to 0.3 Hz, suggesting significant opposing wave components necessary for DF microseism generation were negligible at the site. Florence produced large waves over deep water while Ernesto only generated waves in coastal regions, yet both storms produced similar spectra. This suggests near-coastal shallow water as the dominant region for observed microseism generation.

  11. Intelligent obstacle avoidance system for unmanned undersea vehicles in shallow water

    NASA Astrophysics Data System (ADS)

    Kim, Keehoon; Kostrzewski, Andrew A.; Erwin, Daniel A.

    2004-09-01

    An unmanned undersea vehicle (UUV) needs an obstacle avoidance capability to make autonomous path planning decisions for successful undersea search and survey, maritime reconnaissance, communication/navigation aids, and tracking and trailing in uncharted shallow water. Physical Optics Corporation (POC) has developed a novel autonomous UUV path optimization navigator system for real-time, robust, self-adjusting, intelligent autonomous obstacle avoidance/navigation of UUVs. The POC system is based on our proprietary fast genetic algorithm, which processes signals from on-board obstacle avoidance sonar sensors to continuously optimize the navigation path while avoiding both moving and stationary obstacles in shallow waters. The system performs autonomous obstacle avoidance, accommodating navigation parameter changes. Vehicle dynamics are also incorporated by hydrodynamic compensation.

  12. Flows caused by rise of a rectangular bar partially immersed in shallow water

    NASA Astrophysics Data System (ADS)

    Kuznetsovaa, V. V.; Ostapenko, V. V.

    2016-03-01

    The wave flows caused by the vertical rise of a rectangular bar partially immersed in shallow water filling a rectangular prismatic channel with a horizontal bottom are investigated. Such flows are modeled within the framework of the first approximation of the theory of shallow water disregarding the effect of drag, the viscosity of the fluid, and its surface tension. The case is considered when at the second stage of flow at which the edges of the lower surface of the bar start to come out from the water, the pressure in the region of contact of the bar with the fluid is less than atmospheric one. For this case, an explicit formula setting the law of motion of this boundary is obtained.

  13. Initial Value Problem Solution of Nonlinear Shallow Water-Wave Equations

    SciTech Connect

    Kanoglu, Utku; Synolakis, Costas

    2006-10-06

    The initial value problem solution of the nonlinear shallow water-wave equations is developed under initial waveforms with and without velocity. We present a solution method based on a hodograph-type transformation to reduce the nonlinear shallow water-wave equations into a second-order linear partial differential equation and we solve its initial value problem. The proposed solution method overcomes earlier limitation of small waveheights when the initial velocity is nonzero, and the definition of the initial conditions in the physical and transform spaces is consistent. Our solution not only allows for evaluation of differences in predictions when specifying an exact initial velocity based on nonlinear theory and its linear approximation, which has been controversial in geophysical practice, but also helps clarify the differences in runup observed during the 2004 and 2005 Sumatran tsunamigenic earthquakes.

  14. The structure of raylike arrivals in a shallow-water waveguide.

    PubMed

    Roux, Philippe; Cornuelle, Bruce D; Kuperman, W A; Hodgkiss, W S

    2008-12-01

    Acoustic remote sensing of the oceans requires a detailed understanding of the acoustic forward problem. The results of a shallow-water transmission experiment between a vertical array of sources and a vertical array of receivers are reported. The source array is used to provide additional degrees of freedom to isolate and track raylike arrivals by beamforming over both source and receiver arrays. The coordinated source-receiver array processing procedure is presented and its effectiveness in an example of tracking raylike arrivals in a fluctuating ocean environment is shown. Many of these arrivals can be tracked over an hour or more and show slowly varying amplitude and phase. The use of a double-beamforming algorithm lays the foundation for shallow-water acoustic remote sensing using travel time and source and receive angles of selected eigenrays.

  15. Multiwavelet Discontinuous Galerkin Accelerated ELP Method for the Shallow Water Equations on the Cubed Sphere

    SciTech Connect

    White III, James B; Archibald, Richard K; Evans, Katherine J; Drake, John

    2011-01-01

    In this paper we present a new approach to increase the time-step size for an explicit discontinuous Galerkin numerical method. The attributes of this approach are demonstrated on standard tests for the shallow-water equations on the sphere. The addition of multiwavelets to discontinuous Galerkin method, which has the benefit of being scalable, flexible, and conservative, provides a hierarchical scale structure that can be exploited to improve computational efficiency in both the spatial and temporal dimensions. This paper explains how combining a multiwavelet discontinuous Galerkin method with exact linear part time-evolution schemes, which can remain stable for implicit-sized time steps, can help increase the time-step size for shallow water equations on the sphere.

  16. Algorithmically scalable block preconditioner for fully implicit shallow-water equations in CAM-SE

    SciTech Connect

    Lott, P. Aaron; Woodward, Carol S.; Evans, Katherine J.

    2014-10-19

    Performing accurate and efficient numerical simulation of global atmospheric climate models is challenging due to the disparate length and time scales over which physical processes interact. Implicit solvers enable the physical system to be integrated with a time step commensurate with processes being studied. The dominant cost of an implicit time step is the ancillary linear system solves, so we have developed a preconditioner aimed at improving the efficiency of these linear system solves. Our preconditioner is based on an approximate block factorization of the linearized shallow-water equations and has been implemented within the spectral element dynamical core within the Community Atmospheric Model (CAM-SE). Furthermore, in this paper we discuss the development and scalability of the preconditioner for a suite of test cases with the implicit shallow-water solver within CAM-SE.

  17. Biological implications of the hydrodynamics of swimming at or near the surface and in shallow water.

    PubMed

    Blake, R W

    2009-03-01

    The origins and effects of wave drag at and near the surface and in shallow water are discussed in terms of the dispersive waves generated by streamlined technical bodies of revolution and by semi-aquatic and aquatic animals with a view to bearing on issues regarding the design and function of autonomous surface and underwater vehicles. A simple two-dimensional model based on energy flux, allowing assessment of drag and its associated wave amplitude, is applied to surface swimming in Lesser Scaup ducks and is in good agreement with measured values. It is argued that hydrodynamic limitations to swimming at speeds associated with the critical Froude number ( approximately 0.5) and hull speed do not necessarily set biological limitations as most behaviours occur well below the hull speed. From a comparative standpoint, the need for studies on the hull displacement of different forms is emphasized. For forms in surface proximity, drag is a function of both Froude and Reynolds numbers. Whilst the depth dependence of wave drag is not particularly sensitive to Reynolds number, its magnitude is, with smaller and slower forms subject to relatively less drag augmentation than larger, faster forms that generate additional resistance due to ventilation and spray. A quasi-steady approach to the hydrodynamics of swimming in shallow water identifies substantial drag increases relative to the deeply submerged case at Froude numbers of about 0.9 that could limit the performance of semi-aquatic and aquatic animals and autonomous vehicles. A comparative assessment of fast-starting trout and upside down catfish shows that the energy losses of fast-starting fish are likely to be less for fish in surface proximity in deep water than for those in shallow water. Further work on unsteady swimming in both circumstances is encouraged. Finally, perspectives are offered as to how autonomous surface and underwater vehicles in surface proximity and shallow water could function to avoid

  18. Generalized energy and potential enstrophy conserving finite difference schemes for the shallow water equations

    NASA Technical Reports Server (NTRS)

    Abramopoulos, Frank

    1988-01-01

    The conditions under which finite difference schemes for the shallow water equations can conserve both total energy and potential enstrophy are considered. A method of deriving such schemes using operator formalism is developed. Several such schemes are derived for the A-, B- and C-grids. The derived schemes include second-order schemes and pseudo-fourth-order schemes. The simplest B-grid pseudo-fourth-order schemes are presented.

  19. Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field.

    PubMed

    Giovannelli, Donato; d'Errico, Giuseppe; Fiorentino, Federica; Fattorini, Daniele; Regoli, Francesco; Angeletti, Lorenzo; Bakran-Petricioli, Tatjana; Vetriani, Costantino; Yücel, Mustafa; Taviani, Marco; Manini, Elena

    2016-01-01

    Pockmarks are crater-like depression on the seafloor associated with hydrocarbon ascent through muddy sediments in continental shelves around the world. In this study, we examine the diversity and distribution of benthic microbial communities at shallow-water pockmarks adjacent to the Middle Adriatic Ridge. We integrate microbial diversity data with characterization of local hydrocarbons concentrations and sediment geochemistry. Our results suggest these pockmarks are enriched in sedimentary hydrocarbons, and host a microbial community dominated by Bacteria, even in deeper sediment layers. Pockmark sediments showed higher prokaryotic abundance and biomass than surrounding sediments, potentially due to the increased availability of organic matter and higher concentrations of hydrocarbons linked to pockmark activity. Prokaryotic diversity analyses showed that the microbial communities of these shallow-water pockmarks are unique, and comprised phylotypes associated with the cycling of sulfur and nitrate compounds, as well as numerous know hydrocarbon degraders. Altogether, this study suggests that shallow-water pockmark habitats enhance the diversity of the benthic prokaryotic biosphere by providing specialized environmental niches. PMID:27379070

  20. Successes and failures of shallow-water interpretations of Voyager wind data.

    PubMed

    Dowling, Timothy E.

    1994-06-01

    Studying the dynamics of Jupiter's atmosphere is a rewarding experience, in part because the planet's cloud-top circulations are easy to track from space, the jet streams flow in straight lines eastward or westward, and there is enough room for the vortices to usually keep out of each other's way. Earth, in contrast, is a planet with global circulations that are not easy to track from space, with jet streams that make wide, fluctuating arcs as they negotiate mountain ranges, and with vortices that are constantly jostling against each other in a cramped environment. But we know a great deal more about the vertical structure of Earth's atmosphere than of Jupiter's. In order to make headway on the Jovian problem, researchers have turned to the shallow-water model as a guide to interpreting the Voyager wind data. The shallow-water model matches the character of the data because it combines high-resolution horizontal dynamics with low-resolution vertical structure, but there is no guarantee that it captures the character of Jupiter's atmosphere itself. Remarkably, the model does well at reproducing the Great Red Spot, and it has revealed that Jupiter is clever about how it manages its vorticity by arranging its zonal winds to be neutrally stable with respect to Arnol'd's second stability theorem. We discuss reasons why the shallow-water model works for Jupiter and point out the limitations that are motivating researchers to develop more realistic models.

  1. Equilibrium Statistical Mechanics and Energy Partition for the Shallow Water Model

    NASA Astrophysics Data System (ADS)

    Renaud, A.; Venaille, A.; Bouchet, F.

    2016-05-01

    The aim of this paper is to use large deviation theory in order to compute the entropy of macrostates for the microcanonical measure of the shallow water system. The main prediction of this full statistical mechanics computation is the energy partition between a large scale vortical flow and small scale fluctuations related to inertia-gravity waves. We introduce for that purpose a semi-Lagrangian discrete model of the continuous shallow water system, and compute the corresponding statistical equilibria. We argue that microcanonical equilibrium states of the discrete model in the continuous limit are equilibrium states of the actual shallow water system. We show that the presence of small scale fluctuations selects a subclass of equilibria among the states that were previously computed by phenomenological approaches that were neglecting such fluctuations. In the limit of weak height fluctuations, the equilibrium state can be interpreted as two subsystems in thermal contact: one subsystem corresponds to the large scale vortical flow, the other subsystem corresponds to small scale height and velocity fluctuations. It is shown that either a non-zero circulation or rotation and bottom topography are required to sustain a non-zero large scale flow at equilibrium. Explicit computation of the equilibria and their energy partition is presented in the quasi-geostrophic limit for the energy-enstrophy ensemble. The possible role of small scale dissipation and shocks is discussed. A geophysical application to the Zapiola anticyclone is presented.

  2. Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field

    PubMed Central

    Giovannelli, Donato; d'Errico, Giuseppe; Fiorentino, Federica; Fattorini, Daniele; Regoli, Francesco; Angeletti, Lorenzo; Bakran-Petricioli, Tatjana; Vetriani, Costantino; Yücel, Mustafa; Taviani, Marco; Manini, Elena

    2016-01-01

    Pockmarks are crater-like depression on the seafloor associated with hydrocarbon ascent through muddy sediments in continental shelves around the world. In this study, we examine the diversity and distribution of benthic microbial communities at shallow-water pockmarks adjacent to the Middle Adriatic Ridge. We integrate microbial diversity data with characterization of local hydrocarbons concentrations and sediment geochemistry. Our results suggest these pockmarks are enriched in sedimentary hydrocarbons, and host a microbial community dominated by Bacteria, even in deeper sediment layers. Pockmark sediments showed higher prokaryotic abundance and biomass than surrounding sediments, potentially due to the increased availability of organic matter and higher concentrations of hydrocarbons linked to pockmark activity. Prokaryotic diversity analyses showed that the microbial communities of these shallow-water pockmarks are unique, and comprised phylotypes associated with the cycling of sulfur and nitrate compounds, as well as numerous know hydrocarbon degraders. Altogether, this study suggests that shallow-water pockmark habitats enhance the diversity of the benthic prokaryotic biosphere by providing specialized environmental niches. PMID:27379070

  3. Underwater partial polarization signatures from the shallow water real-time imaging polarimeter (SHRIMP)

    NASA Astrophysics Data System (ADS)

    Taylor, James S., Jr.; Davis, P. S.; Wolff, Lawrence B.

    2003-09-01

    Research has shown that naturally occurring light outdoors and underwater is partially linearly polarized. The polarized components can be combined to form an image that describes the polarization of the light in the scene. This image is known as the degree of linear polarization (DOLP) image or partial polarization image. These naturally occurring polarization signatures can provide a diver or an unmanned underwater vehicle (UUV) with more information to detect, classify, and identify threats such as obstacles and/or mines in the shallow water environment. The SHallow water Real-time IMaging Polarimeter (SHRIMP), recently developed under sponsorship of Dr. Tom Swean at the Office of Naval Research (Code 321OE), can measure underwater partial polarization imagery. This sensor is a passive, three-channel device that simultaneously measures the three components of the Stokes vector needed to determine the partial linear polarization of the scene. The testing of this sensor has been completed and the data has been analyzed. This paper presents performance results from the field-testing and quantifies the gain provided by the partial polarization signature of targets in the Very Shallow Water (VSW) and Surf Zone (SZ) regions.

  4. A Gegenbauer-based Shallow Water solver for a thick "ocean" over a rotating sphere

    NASA Astrophysics Data System (ADS)

    Shamir, Ofer; Paldor, Nathan

    2016-01-01

    Gegenbauer Harmonics which are the eigenfunctions of the Linearized Shallow Water Equations in spherical coordinates for a thick layer of ocean are examined as alternative basis functions for global-scale spectral models. The performance of this basis is compared to that of the traditional Spherical Harmonics basis by testing the accuracy and stability with which the two bases simulate a single, analytic, wave mode of the Linearized Shallow Water Equations. For the linear equations our results show that for low initial wavenumbers the Spherical Harmonics are able to conserve the single wave mode with comparable accuracy to that of the proposed Gegenbauer Harmonics basis while at high initial wavenumbers the simulation with the Spherical Harmonics is significantly less accurate than the simulation with the Gegenbauer Harmonics. By considering a range of ocean thicknesses it is found that, for thin oceans, the Spherical Harmonics become numerically unstable after about 150 days, whereas the proposed Gegenbauer Harmonics remain stable even though they too are not the eigenfunctions of the Linearized Shallow Water Equations in thin oceans. This numerical instability of the Spherical Harmonics is independent of the wave's period and was not observed in thick oceans where the simulation remained stable for at least 200 days. Our results suggest that the numerical instability of the Spherical Harmonics originates at the poles. For the non-linear equations our results show that the Spherical Harmonics solutions are less accurate than the Gegenbauer Harmonics even in a thick ocean.

  5. Microbial diversity in shallow-water hydrothermal sediments of Kueishan Island, Taiwan as revealed by pyrosequencing.

    PubMed

    Wang, Li; Cheung, Man Kit; Kwan, Hoi Shan; Hwang, Jiang-Shiou; Wong, Chong Kim

    2015-11-01

    Kueishan Island is a young volcanic island in the southernmost edge of the Okinawa Trough in the northeastern part of Taiwan. A cluster of hydrothermal vents is located off the southeastern tip of the Island at water depths between 10 and 80 m. This paper presents the results of the first study on the microbial communities in bottom sediments collected from the shallow-water hydrothermal vents of Kueishan Island. Small-subunit ribosomal RNA gene-based high-throughput 454 pyrosequencing was used to characterize the assemblages of bacteria, archaea, and small eukaryotes in sediment samples collected at various distances from the hydrothermal vents. Sediment from the vent area contained the highest diversity of archaea and the lowest diversity of bacteria and small eukaryotes. Epsilonproteobacteria were the most abundant group in the vent sediment, but their abundance decreased with increasing distance from the vent area. Most Epsilonproteobacteria belonged to the mesophilic chemolithoautotrophic genera Sulfurovum and Sulfurimonas. Recent reports on these two genera have come from deep-sea hydrothermal vents. Conversely, the relative contribution of Gammaproteobacteria to the bacterial community increased with increasing distance from the vent area. Our study revealed the contrasting effects of venting on the benthic bacterial and archaeal communities, and showed that the sediments of the shallow-waters hydrothermal vents were dominated by chemoautotrophic bacteria. The present work broadens our knowledge on microbial diversity in shallow-water hydrothermal vent habitats. PMID:26132902

  6. Microbial diversity in shallow-water hydrothermal sediments of Kueishan Island, Taiwan as revealed by pyrosequencing.

    PubMed

    Wang, Li; Cheung, Man Kit; Kwan, Hoi Shan; Hwang, Jiang-Shiou; Wong, Chong Kim

    2015-11-01

    Kueishan Island is a young volcanic island in the southernmost edge of the Okinawa Trough in the northeastern part of Taiwan. A cluster of hydrothermal vents is located off the southeastern tip of the Island at water depths between 10 and 80 m. This paper presents the results of the first study on the microbial communities in bottom sediments collected from the shallow-water hydrothermal vents of Kueishan Island. Small-subunit ribosomal RNA gene-based high-throughput 454 pyrosequencing was used to characterize the assemblages of bacteria, archaea, and small eukaryotes in sediment samples collected at various distances from the hydrothermal vents. Sediment from the vent area contained the highest diversity of archaea and the lowest diversity of bacteria and small eukaryotes. Epsilonproteobacteria were the most abundant group in the vent sediment, but their abundance decreased with increasing distance from the vent area. Most Epsilonproteobacteria belonged to the mesophilic chemolithoautotrophic genera Sulfurovum and Sulfurimonas. Recent reports on these two genera have come from deep-sea hydrothermal vents. Conversely, the relative contribution of Gammaproteobacteria to the bacterial community increased with increasing distance from the vent area. Our study revealed the contrasting effects of venting on the benthic bacterial and archaeal communities, and showed that the sediments of the shallow-waters hydrothermal vents were dominated by chemoautotrophic bacteria. The present work broadens our knowledge on microbial diversity in shallow-water hydrothermal vent habitats.

  7. Pressure gradient sensors for bearing determination in shallow water tracking ranges

    NASA Astrophysics Data System (ADS)

    Stein, Peter J.; Euerle, Steven E.; Menoche, Richard K.; Janiesch, Robert E.

    1996-04-01

    Underwater acoustic tracking has traditionally used only the arrival time of tracking pings to localize targets. This implies that the ping transmitted from a target must be received at a minimum of three separate nodes (receiver locations) in order to determine the position. For deep water ranges this was acceptable. In shallow water, where propagation ranges are limited, this requires a large number of nodes. This makes shallow water ranges very costly. An effort is underway to use pressure gradient hydrophones as receivers and measure the bearing of the ping arrival along with arrival time, thereby locating the target using only one tracking node. This allows for increased node spacing and greatly reduced cost. However, the accuracy required for training ranges is on the order of 1 degree. Further, the directional receiver must be housed so as to withstand impacts from fishing operations. Research including design, fabrication, and testing of conventional and unconventional pressure gradient hydrophones, the housing, and signal processing methods are discussed. Extensive testing has already been conducted using a 1″ diameter by 5″ long multimode hydrophone. A shallow water tracking test was conducted at the NUWC Lake Seneca test facility. The results demonstrate the feasibility of tracking using a single pressure gradient hydrophone with an accuracy of 50 yds out to 2 kyds. The effects of multiple paths and scattering are also discussed.

  8. On Classical Solutions to 2D Shallow Water Equations with Degenerate Viscosities

    NASA Astrophysics Data System (ADS)

    Li, Yachun; Pan, Ronghua; Zhu, Shengguo

    2016-07-01

    2D shallow water equations have degenerate viscosities proportional to surface height, which vanishes in many physical considerations, say, when the initial total mass, or energy are finite. Such a degeneracy is a highly challenging obstacle for development of well-posedness theory, even local-in-time theory remains open for a long time. In this paper, we will address this open problem with some new perspectives, independent of the celebrated BD-entropy (Bresch et al in Commun Math Phys 238:211-223, 2003, Commun Part Differ Eqs 28:843-868, 2003, Analysis and Simulation of Fluid Dynamics, 2007). After exploring some interesting structures of most models of 2D shallow water equations, we introduced a proper notion of solution class, called regular solutions, and identified a class of initial data with finite total mass and energy, and established the local-in-time well-posedness of this class of smooth solutions. The theory is applicable to most relatively physical shallow water models, broader than those with BD-entropy structures. We remark that our theory is on the local strong solutions, while the BD entropy is an essential tool for the global weak solutions. Later, a Beale-Kato-Majda type blow-up criterion is also established. This paper is mainly based on our early preprint (Li et al. in 2D compressible Navier-Stokes equations with degenerate viscosities and far field vacuum, preprint. arXiv:1407.8471, 2014).

  9. Model-based processor design for a shallow water ocean acoustic experiment

    SciTech Connect

    Candy, J.V. ); Sullivan, E.J. )

    1994-04-01

    Model-based signal processing is a well-defined methodology enabling the inclusion of environmental (propagation) models, measurement (sensor arrays) models, and noise (shipping, measurement) models into a sophisticated processing algorithm. Depending on the class of model developed from the mathematical representation of the physical phenomenology, various processors can evolve. Here the design of a space-varying, nonstationary, model-based processor (MBP) is investigated and applied to the data from a well-controlled shallow water experiment performed at Hudson Canyon. This particular experiment is very attractive for the inaugural application of the MBP because it was performed in shallow water at low frequency requiring a small number of modes. In essence, the Hudson Canyon represents a well-known ocean environment, making it ideal for this investigation. In this shallow water application, a state-space representation of the normal-mode propagation model is used. The processor is designed such that it allows [ital in] [ital situ] recursive estimation of both the pressure-field and modal functions. It is shown that the MBP can be effectively utilized to validate'' the performance of the model on noisy ocean acoustic data. In fact, a set of processors is designed, one for each source range and the results are quite good---implying that the propagation model with measured parameters adequately represents the data.

  10. Biomechanical characteristics of adults walking in shallow water and on land.

    PubMed

    Barela, Ana M F; Stolf, Sandro F; Duarte, Marcos

    2006-06-01

    Although water environment has been employed for different physical activities, there is little available information regarding the biomechanical characteristics of walking in shallow water. In the present study, we investigated the kinematics, ground reaction forces (GRF), and electromyographic (EMG) activation patterns of eight selected muscles of adults walking in shallow water and on land. Ten healthy adults were videotaped while walking at self-selected comfortable speeds on land and in water (at the Xiphoid process level). In both conditions there was a force plate embedded in the middle of each walkway to register the GRF components. Reflective markers were placed over main anatomical landmarks and they were digitalized later to obtain stride characteristics and joint angle information. In general, walking in water was different to walking on land in many aspects and these differences were attributed to the drag force, the apparent body weight reduction, and the lower comfortable speed during walking in shallow water. The joint range of motions (ROM) were not different, the segment ROM, magnitudes of GRF components, impact force, and impulse were different between the two conditions. The present results will contribute to a better understanding of this activity in the context of training and rehabilitation.

  11. Biding their time - Insights from propagule experiments into the assemblage composition of shallow-water foraminifera under environmental change

    NASA Astrophysics Data System (ADS)

    Weinmann, Anna E.; Goldstein, Susan T.

    2016-04-01

    The assemblage composition of shallow-water foraminifera in coastal environments is often strongly influenced by water temperature and salinity. Community structures of foraminifera have long been used as indicators for environmental change. This is - at least partly - due to their ability to respond quickly to changing local conditions, which becomes increasingly important in the wake of ongoing climate change. In this study, we examined the range of assemblage compositions that grow and develop under different combinations of temperature and salinity. We did this by applying the Propagule Method using several coastal sites in Georgia and Florida (United States). The Propagule Method is an experimental tool for examining the growth of foraminiferal assemblages from suites of tiny juveniles that occur in the "propagule banks" found within the fine fraction of the sediment. We exposed the propagule banks from our study sites to different temperatures (18, 24, and 30°C) and salinities (15 and 35) over a period of 5 weeks, to simulate different shallow-water conditions. Results show that foraminifera grew abundantly in all experimental treatments, with increased growth and reproduction occurring at higher temperatures (24 and 30°C). Salinity had a strong influence on the species composition of the experimental assemblages. The most successful species were opportunists and known "pioneer" species such as Ammonia tepida (Cushman) or Quinqueloculina seminula (Linné). However, we also found significant numbers of allochthonous or "exotic" species that occurred only in rare numbers or were even absent from the living in situ assemblages of the study sites. The presence of allochthonous taxa resulted from propagule recruitment from areas beyond our immediate study sites. These propagules - which might be transported even beyond their ecological range - may remain viable within the propagule bank until environmental conditions become favorable. As such, they are "biding

  12. Shallow-water carbonate records of hyperthermals: do Pacific Ocean guyots hold the key? (Invited)

    NASA Astrophysics Data System (ADS)

    Robinson, S. A.

    2010-12-01

    The Paleocene-Eocene Thermal Maximum (PETM; ~55.8 Ma) is associated with a rapid and large carbon cycle perturbation, transient warming and deep-sea acidification, and is the best-known example of a hyperthermal event. Although this event is widely known from pelagic, hemipelagic and continental records, the lack of in situ, shallow-water, carbonate-platform sections inhibits interpretations of whether the PETM had a significant effect on shallow-water carbonate ecosystems. Guyots in the Pacific Ocean are submerged seamounts that comprise a volcanic pedestal, topped with shallow-water carbonates (that accumulated at or close to sea-level) and a pelagic cap that formed after the platform ‘drowned’ (sunk below the photic zone). The isolated carbonate platforms on these guyots formed far from terrigenous input and runoff, both detrimental effects for calcifying organisms. The isolation and thickness of the carbonate platforms on guyots makes them ideal localities at which to investigate the response of shallow-water carbonate ecosystems to changes in surface ocean temperature and chemistry, free from the complications that can affect continental margin settings. Limalok Guyot (ODP Site 871) in the Pacific Ocean comprises a volcanic pedestal topped by a Paleogene carbonate platform that drowned in the middle Eocene. Carbon-isotope stratigraphy of the platform carbonate sediments will be presented, in conjunction with existing biostratigraphy, to refine the stratigraphic framework of the carbonate platform. Although core recovery was poor, the major Late Paleocene-Middle Eocene stratigraphic trends in carbon-isotopes can be recognized, including a prominent ~3‰ negative carbon isotope excursion (CIE), recording the onset of the PETM. The lithological and paleontological record of the PETM on Limalok Guyot shows no major evidence for a carbonate production crisis, suggesting that the effects of any changes in temperatures or surface ocean pH were relatively short

  13. Bone-Eating Worms Spread: Insights into Shallow-Water Osedax (Annelida, Siboglinidae) from Antarctic, Subantarctic, and Mediterranean Waters.

    PubMed

    Taboada, Sergi; Riesgo, Ana; Bas, Maria; Arnedo, Miquel A; Cristobo, Javier; Rouse, Greg W; Avila, Conxita

    2015-01-01

    Osedax, commonly known as bone-eating worms, are unusual marine annelids belonging to Siboglinidae and represent a remarkable example of evolutionary adaptation to a specialized habitat, namely sunken vertebrate bones. Usually, females of these animals live anchored inside bone owing to a ramified root system from an ovisac, and obtain nutrition via symbiosis with Oceanospirillales gamma-proteobacteria. Since their discovery, 26 Osedax operational taxonomic units (OTUs) have been reported from a wide bathymetric range in the Pacific, the North Atlantic, and the Southern Ocean. Using experimentally deployed and naturally occurring bones we report here the presence of Osedax deceptionensis at very shallow-waters in Deception Island (type locality; Antarctica) and at moderate depths near South Georgia Island (Subantarctic). We present molecular evidence in a new phylogenetic analysis based on five concatenated genes (28S rDNA, Histone H3, 18S rDNA, 16S rDNA, and cytochrome c oxidase I-COI-), using Maximum Likelihood and Bayesian inference, supporting the placement of O. deceptionensis as a separate lineage (Clade VI) although its position still remains uncertain. This phylogenetic analysis includes a new unnamed species (O. 'mediterranea') recently discovered in the shallow-water Mediterranean Sea belonging to Osedax Clade I. A timeframe of the diversification of Osedax inferred using a Bayesian framework further suggests that Osedax diverged from other siboglinids during the Middle Cretaceous (ca. 108 Ma) and also indicates that the most recent common ancestor of Osedax extant lineages dates to the Late Cretaceous (ca. 74.8 Ma) concomitantly with large marine reptiles and teleost fishes. We also provide a phylogenetic framework that assigns newly-sequenced Osedax endosymbionts of O. deceptionensis and O. 'mediterranea' to ribospecies Rs1. Molecular analysis for O. deceptionensis also includes a COI-based haplotype network indicating that individuals from Deception

  14. Bone-Eating Worms Spread: Insights into Shallow-Water Osedax (Annelida, Siboglinidae) from Antarctic, Subantarctic, and Mediterranean Waters

    PubMed Central

    Taboada, Sergi; Riesgo, Ana; Bas, Maria; Arnedo, Miquel A.; Cristobo, Javier; Rouse, Greg W.; Avila, Conxita

    2015-01-01

    Osedax, commonly known as bone-eating worms, are unusual marine annelids belonging to Siboglinidae and represent a remarkable example of evolutionary adaptation to a specialized habitat, namely sunken vertebrate bones. Usually, females of these animals live anchored inside bone owing to a ramified root system from an ovisac, and obtain nutrition via symbiosis with Oceanospirillales gamma-proteobacteria. Since their discovery, 26 Osedax operational taxonomic units (OTUs) have been reported from a wide bathymetric range in the Pacific, the North Atlantic, and the Southern Ocean. Using experimentally deployed and naturally occurring bones we report here the presence of Osedax deceptionensis at very shallow-waters in Deception Island (type locality; Antarctica) and at moderate depths near South Georgia Island (Subantarctic). We present molecular evidence in a new phylogenetic analysis based on five concatenated genes (28S rDNA, Histone H3, 18S rDNA, 16S rDNA, and cytochrome c oxidase I–COI–), using Maximum Likelihood and Bayesian inference, supporting the placement of O. deceptionensis as a separate lineage (Clade VI) although its position still remains uncertain. This phylogenetic analysis includes a new unnamed species (O. ‘mediterranea’) recently discovered in the shallow-water Mediterranean Sea belonging to Osedax Clade I. A timeframe of the diversification of Osedax inferred using a Bayesian framework further suggests that Osedax diverged from other siboglinids during the Middle Cretaceous (ca. 108 Ma) and also indicates that the most recent common ancestor of Osedax extant lineages dates to the Late Cretaceous (ca. 74.8 Ma) concomitantly with large marine reptiles and teleost fishes. We also provide a phylogenetic framework that assigns newly-sequenced Osedax endosymbionts of O. deceptionensis and O. ‘mediterranea’ to ribospecies Rs1. Molecular analysis for O. deceptionensis also includes a COI-based haplotype network indicating that individuals from

  15. Critical fishery species in Alaska offshore oil and gas lease areas

    SciTech Connect

    Arbegast, J.; Allen, M.

    1980-11-01

    Offshore oil and gas development in Alaska is governed through sales of lease blocks within a designated lease area. The Department of the Interior through the Bureau of Land Management (BLM) manages these sales and prepares the necessary Environmental Impact Statement prior to each sale. BLM and the National Oceanic and Atmospheric Administration (NOAA) are involved in the Outer Continental Shelf Environmental Assessment Program (OCSEAP). OCSEAP was initiated by BLM to help assess the impact of outer continental shelf oil and gas development on the environment.

  16. Occurrence and genotypic analysis of Trichinella species in Alaska marine-associated mammals of the Bering and Chukchi seas.

    PubMed

    Seymour, J; Horstmann-Dehn, L; Rosa, C; Lopez, J A

    2014-02-24

    The zoonotic parasite Trichinella is the causative agent of trichinellosis outbreaks in the circumpolar Arctic. Subsistence communities are particularly prone to trichinellosis due to traditional meat preparation methods and regional presence of a freeze-tolerant Trichinella species (Trichinella nativa). This study is the first application of a validated artificial digestion method in determining incidence of Trichinella sp. in Alaskan mammals. Infection incidence in pinniped species (Erignathus barbatus, Eumetopias jubatus, Odobenus rosmarus divergens, and Pusa hispida) was low, with only 1/57 ringed seals infected. Polymerase Chain Reaction assays indicate T. nativa as the only species present in northern Alaska. Analysis of an archived polar bear (Ursus maritimus) muscle sample shows freeze-tolerance and longevity for T. nativa to -20°C for 10 years and short-term freeze resistance to -80°C when morphology was used to determine presence of live larvae. However, larval motility suggests 0% survival. An approach that combines artificial digestion with PCR based species identification has excellent potential for Trichinella sp. detection and identification of archived tissues. Overall, Trichinella in Alaskan mammals, particularly marine mammals of subsistence importance, appears to be a minor problem. These modern diagnostic techniques provide accurate insight into the presence of Trichinella in the Alaskan marine environment. PMID:24373515

  17. Seaweed fails to prevent ocean acidification impact on foraminifera along a shallow-water CO2 gradient.

    PubMed

    Pettit, Laura R; Smart, Christopher W; Hart, Malcolm B; Milazzo, Marco; Hall-Spencer, Jason M

    2015-05-01

    Ocean acidification causes biodiversity loss, alters ecosystems, and may impact food security, as shells of small organisms dissolve easily in corrosive waters. There is a suggestion that photosynthetic organisms could mitigate ocean acidification on a local scale, through seagrass protection or seaweed cultivation, as net ecosystem organic production raises the saturation state of calcium carbonate making seawater less corrosive. Here, we used a natural gradient in calcium carbonate saturation, caused by shallow-water CO2 seeps in the Mediterranean Sea, to assess whether seaweed that is resistant to acidification (Padina pavonica) could prevent adverse effects of acidification on epiphytic foraminifera. We found a reduction in the number of species of foraminifera as calcium carbonate saturation state fell and that the assemblage shifted from one dominated by calcareous species at reference sites (pH ∼8.19) to one dominated by agglutinated foraminifera at elevated levels of CO2 (pH ∼7.71). It is expected that ocean acidification will result in changes in foraminiferal assemblage composition and agglutinated forms may become more prevalent. Although Padina did not prevent adverse effects of ocean acidification, high biomass stands of seagrass or seaweed farms might be more successful in protecting epiphytic foraminifera. PMID:26140195

  18. Seaweed fails to prevent ocean acidification impact on foraminifera along a shallow-water CO2 gradient

    PubMed Central

    Pettit, Laura R; Smart, Christopher W; Hart, Malcolm B; Milazzo, Marco; Hall-Spencer, Jason M

    2015-01-01

    Ocean acidification causes biodiversity loss, alters ecosystems, and may impact food security, as shells of small organisms dissolve easily in corrosive waters. There is a suggestion that photosynthetic organisms could mitigate ocean acidification on a local scale, through seagrass protection or seaweed cultivation, as net ecosystem organic production raises the saturation state of calcium carbonate making seawater less corrosive. Here, we used a natural gradient in calcium carbonate saturation, caused by shallow-water CO2 seeps in the Mediterranean Sea, to assess whether seaweed that is resistant to acidification (Padina pavonica) could prevent adverse effects of acidification on epiphytic foraminifera. We found a reduction in the number of species of foraminifera as calcium carbonate saturation state fell and that the assemblage shifted from one dominated by calcareous species at reference sites (pH ∼8.19) to one dominated by agglutinated foraminifera at elevated levels of CO2 (pH ∼7.71). It is expected that ocean acidification will result in changes in foraminiferal assemblage composition and agglutinated forms may become more prevalent. Although Padina did not prevent adverse effects of ocean acidification, high biomass stands of seagrass or seaweed farms might be more successful in protecting epiphytic foraminifera. PMID:26140195

  19. Seaweed fails to prevent ocean acidification impact on foraminifera along a shallow-water CO2 gradient.

    PubMed

    Pettit, Laura R; Smart, Christopher W; Hart, Malcolm B; Milazzo, Marco; Hall-Spencer, Jason M

    2015-05-01

    Ocean acidification causes biodiversity loss, alters ecosystems, and may impact food security, as shells of small organisms dissolve easily in corrosive waters. There is a suggestion that photosynthetic organisms could mitigate ocean acidification on a local scale, through seagrass protection or seaweed cultivation, as net ecosystem organic production raises the saturation state of calcium carbonate making seawater less corrosive. Here, we used a natural gradient in calcium carbonate saturation, caused by shallow-water CO2 seeps in the Mediterranean Sea, to assess whether seaweed that is resistant to acidification (Padina pavonica) could prevent adverse effects of acidification on epiphytic foraminifera. We found a reduction in the number of species of foraminifera as calcium carbonate saturation state fell and that the assemblage shifted from one dominated by calcareous species at reference sites (pH ∼8.19) to one dominated by agglutinated foraminifera at elevated levels of CO2 (pH ∼7.71). It is expected that ocean acidification will result in changes in foraminiferal assemblage composition and agglutinated forms may become more prevalent. Although Padina did not prevent adverse effects of ocean acidification, high biomass stands of seagrass or seaweed farms might be more successful in protecting epiphytic foraminifera.

  20. A method for measuring vertical accretion, elevation, and compaction of soft, shallow-water sediments

    USGS Publications Warehouse

    Cahoon, D.R.; Marin, P.E.; Black, B.K.; Lynch, J.C.

    2000-01-01

    High-resolution measures of vertical accretion, elevation, and compaction of shallow-water sediments are fundamental to understanding the processes that control elevation change and the mechanisms of progradation (e.g., development of mudflats and intertidal wetlands) in coastal systems. Yet, measurements of elevation by traditional survey methods often are of low accuracy because of the compressible nature of the substrates. Nor do they provide measures of vertical accretion or sediment compaction. This paper evaluates the use in shallow-water systems of an approach designed to measure these variables in vegetated wetlands. The approach employs simultaneous measures of elevation from temporary benchmarks using a sedimentation-erosion table (SET) and vertical accretion from marker horizons with sediment cores collected with a cryogenic coring apparatus. The measures are made with a level of resolution sufficient to distinguish between the influence of surface and subsurface processes on elevation, thus providing quantitative estimates of shallow subsidence. The SET-marker horizon approach was evaluated on a developing splay created by an artificial crevasse of a distributary in the Mississippi River delta. The approach provided high-resolution measures of vertical accretion (48.3 ' 2.0 cm.) and elevation (36.7 ' 1.6 cm) over a 4-year period, with the difference between the two indicating the amount of shallow subsidence. In addition, by laying new marker horizons in later years, the approach provided rates not only of shallow subsidence (3.9 ' 0.5 cm y-1) but also compaction of newly deposited seiments (2.1 ' 0.6 cm y-1) and compaction of underlying sediments (1.8 ' 2.0 cm y-1 ) over a two-year period. Hence, the SET-marker horizon approach has widespread applicability in both emergent wetland and shallow water environments for providing high resolution measures of the processes controlling elevation change.

  1. Modeling wind waves from deep to shallow waters in Lake Michigan using unstructured SWAN

    NASA Astrophysics Data System (ADS)

    Mao, Miaohua; van der Westhuysen, André J.; Xia, Meng; Schwab, David J.; Chawla, Arun

    2016-06-01

    Accurate wind-wave simulations are vital for evaluating the impact of waves on coastal dynamics, especially when wave observations are sparse. It has been demonstrated that structured-grid models have the ability to capture the wave dynamics of large-scale offshore domains, and the recent emergence of unstructured meshes provides an opportunity to better simulate shallow-water waves by resolving the complex geometry along islands and coastlines. For this study, wind waves in Lake Michigan were simulated using the unstructured-grid version of Simulating Waves Nearshore (un-SWAN) model with various types of wind forcing, and the model was calibrated using in situ wave observations. Sensitivity experiments were conducted to investigate the key factors that impact wave growth and dissipation processes. In particular, we considered (1) three wind field sources, (2) three formulations for wind input and whitecapping, (3) alternative formulations and coefficients for depth-induced breaking, and (4) various mesh types. We find that un-SWAN driven by Global Environmental Multiscale (GEM) wind data reproduces significant wave heights reasonably well using previously proposed formulations for wind input, recalibrated whitecapping parameters, and alternative formulations for depth-induced breaking. The results indicate that using GEM wind field data as input captures large waves in the midlake most accurately, while using the Natural Neighbor Method wind field reproduces shallow-water waves more accurately. Wind input affects the simulated wave evolution across the whole lake, whereas whitecapping primarily affects wave dynamics in deep water. In shallow water, the process of depth-induced breaking is dominant and highly dependent upon breaker indices and mesh types.

  2. Gravity currents flowing upslope: Laboratory experiments and shallow-water simulations

    NASA Astrophysics Data System (ADS)

    Lombardi, V.; Adduce, C.; Sciortino, G.; La Rocca, M.

    2015-01-01

    This paper investigates the dynamics of lock-release gravity currents propagating upslope by laboratory experiments and shallow-water simulations. Both the interface between the dense and the ambient fluid and the instantaneous velocity field were measured by image analysis. Different runs were carried out by varying the initial density of the lock fluid and the bed upslope. As a gravity current moves upslope, the dense layer becomes thinner, and an accumulation region of dense fluid in the initial part of the tank occurs. The current speed decreases as the bed upslope increases, and for the highest up sloping angles, the gravity current stops before reaching the end of the tank. A new two-layer shallow-water model is developed and benchmarked against laboratory experiments. The present model accounts for the mixing between the two layers, the free surface, and the space-time variations of the density. The effect of the horizontal density gradient in the simulation of gravity currents is investigated by comparing the numerical results of both the present model and the model proposed by Adduce et al. ["Gravity currents produced by lock-exchange: Experiments and simulations with a two layer shallow-water model with entrainment," J. Hydraul. Eng. 138, 111-121 (2012)] with laboratory measurements. The comparison shows that the present model reproduces both the current shape and the front position better than the Adduce et al. model, in particular, for gravity currents flowing up a slope. For these currents, the presence of a backflow near the lock is shown by the analysis of the streamwise depth-averaged velocity predicted by the present model and the velocity measured by particle image velocimetry as well.

  3. Shallow-water limestones within the Paleogene forearc basin of California: Unique paleogeographic indicators

    SciTech Connect

    Whidden, K.J.; Bottjer, D.J.; Lund, S.P. . Dept. of Geological Sciences)

    1992-01-01

    A number of shallow-water limestones have recently been documented in late Mesozoic/Paleogene forearc strata of the Cordilleran continental arc. These limestones occur on two different tectonic blocks which were both developed within the forearc basin and subsequently moved relative to one another due to oblique convergence since Late Cretaceous time. Faunal evidence suggests that these limestones were deposited within the photic zone, at shelfal depths. Each limestone represents part or all of the basal Paleogene sequence; they are intercalated with or overlain by deeper-water strata. One region of outcrops in the western Santa Monica Mountains is latest Paleocene in age, while the other region, in the eastern Santa Ynez Mountains and Wheeler Gorge area, is early Eocene in age. These shallow-water limestones may be used as paleogeographic indicators, as they represent relative topographic highs within the basin. The microplate tectonic reconstruction of Hornafius (1985) suggests that the limestones occur on opposite sides of a north-south trending trough within the overall forearc basin. The Paleocene limestones, which occur along the eastern margin of the trough, are intercalated with marine shales and may represent small fluctuations in relative sea level and/or sediment supply on a topographic high. The Eocene limestones, which occur along the western side of the trough, are always the basal Paleogene unit deposited on tilted Cretaceous strata or Franciscan rocks and overlain by deeper-water shales. The occurrence of Franciscan as basement for limestone deposition implies localized tectonic uplift within the forearc. Each of these limestones probably represents initiation of a single period of relative sea level rise, as the basal shallow-water carbonates were eventually overwhelmed by deeper-water shales. Thus two episodes of carbonate deposition allow for the delineation of two topographic highs within the Paleogene forearc basin.

  4. Response of shallow-water carbonates and reef systems to the Toarcian Ocean Anoxic Event (183 Ma) on the Dinaric Carbonate Platform (Slovenia)

    NASA Astrophysics Data System (ADS)

    Martindale, R. C.; Kosir, A.; Schaller, M. F.

    2015-12-01

    With rising concerns regarding the persistence of coral reefs through the 21st century, there is a crucial need to understand how these ecosystems will respond to future environmental deterioration (e.g. ocean warming, acidification, and decreased oxygenation). Several ancient events have been identified as good analogues for modern ecological changes, however, most of these correspond to mass extinction events. By studying carbon cycle perturbations that caused more minor ecosystem collapse, such as the Toarcian Ocean Anoxic Event (T-OAE), the key physiological, ecological, and environmental features that correlate with species and community survival can be assessed. The Dinaric Carbonate Platform, which extends from northeastern Italy to northwestern Albania, is one of the few platforms in Europe that captures an almost continuous shallow-water record of Pliensbachian and Toarcian strata. Specifically, this comparatively poorly studied platform captures the T-OAE in shallow-water carbonates. One such outcrop on the Trnovski Gozd karst plateau in western Slovenia contains both Pleinsbachian lithiotid (bivalve) biostromes and coral bioherms (i.e. coral reefs). The occurrence of both lithiotid and coral buildups in one section is extremely rare and provides the opportunity to study the response of both communities, as well as the carbonate system as a whole, to the T-OAE. This research focuses on the lithology and chemostratigraphy from this locality, particularly identifying the T-OAE horizon more precisely. Additionally, (micro)facies analyses and paleontological analyses of the reefs themselves will be presented. These data will establish the paleoenvironmental conditions that favored reef growth in the Pliensbachian, as well as what conditions changed at the stage boundary and T-OAE to cause the collapse of the shallow-water carbonates and reef systems.

  5. Brucella species survey in polar bears (ursus maritimus) of northern Alaska.

    PubMed

    O'Hara, Todd M; Holcomb, Darce; Elzer, Philip; Estepp, Jessica; Perry, Quinesha; Hagius, Sue; Kirk, Cassandra

    2010-07-01

    We report on the presence of specific antibodies to Brucella spp. and Yersinia enterocolitica in polar bears (Ursus maritimus) from northern Alaska (southern Beaufort Sea) during 2003-2006. Based on numerous known stressors (e.g., climate change and loss of sea ice habitat, contaminants), there is increased concern regarding the status of polar bears. Considering these changes, it is important to assess exposure to potentially pathogenic organisms and to improve understanding of transmission pathways. Brucella or specific antibodies to Brucella spp. has been reported in marine mammals. Various assays were used to elucidate the pathway or source of exposure (e.g., "marine" vs. "terrestrial" Brucella spp.) of northern Alaska polar bears to Brucella spp. The standard plate test (SPT) and the buffered Brucella antigen card test (BBA) were used for initial screening for antibodies specific to Brucella. We then evaluated positive reactors (presence of serum antibody specific for Brucella spp.) using immunoblots and competitive enzyme-linked immunosorbent assay (cELISA; based on pinniped-derived Brucella spp. antigen). Annual prevalence of antibody (BBA and SPT) for Brucella spp. ranged from 6.8% to 18.5% over 2003-2006, with an overall prevalence of 10.2%. Prevalence of Brucella spp. antibody did vary by age class. Western blot analyses indicated 17 samples were positive for Brucella spp. antibody; of these, 13 were negative by marine (pinniped) derived Brucella antigen cELISA and four were positive by marine cELISA. Of the four samples positive for Brucella antibody by marine cELISA, three cross-reacted with Y. enterocolitica and Brucella spp. (one sample was Brucella negative and Y. enterocolitica positive). It appears the polar bear antibody does not react with the antigens used on the marine cELISA assay, potentially indicating a terrestrial (nonpinniped) source of Brucella spp.

  6. Peak sound pressure and sound exposure level from underwater explosions in shallow water.

    PubMed

    Soloway, Alexander G; Dahl, Peter H

    2014-09-01

    Experimental measurements of the peak pressure and sound exposure level (SEL) from underwater explosions collected 7 km off the coast of Virginia Beach, Virginia are presented. The peak pressures are compared to results from previous studies and a semi-empirical equation that is a function of measurement range and charge weight, and are found to be in good agreement. An empirical equation for SEL that similarly employs a scaling approach involving charge weight and range is also presented and shows promise for the prediction of SEL in shallow water.

  7. Travelling wave solutions for some two-component shallow water models

    NASA Astrophysics Data System (ADS)

    Dutykh, Denys; Ionescu-Kruse, Delia

    2016-07-01

    In the present study we perform a unified analysis of travelling wave solutions to three different two-component systems which appear in shallow water theory. Namely, we analyze the celebrated Green-Naghdi equations, the integrable two-component Camassa-Holm equations and a new two-component system of Green-Naghdi type. In particular, we are interested in solitary and cnoidal-type solutions, as two most important classes of travelling waves that we encounter in applications. We provide a complete phase-plane analysis of all possible travelling wave solutions which may arise in these models. In particular, we show the existence of new type of solutions.

  8. A multigrid solver for semi-implicit global shallow-water models

    NASA Technical Reports Server (NTRS)

    Barros, Saulo R. M.; Dee, Dick P.; Dickstein, Flavio

    1990-01-01

    A multigrid solver is developed for the discretized two-dimensional elliptic equation on the sphere that arises from a semiimplicit time discretization of the global shallow-water equations. Different formulations of the semiimplicit scheme result in variable-coefficient Helmholtz-type equations for which no fast direct solvers are available. The efficiency of the multigrid solver is optimal, in the sense that the total operation count is proportional to the number of unknowns. Numerical experiments using initial data derived from actual 300-mb height and wind velocity fields indicate that the present model has very good accuracy and stability properties.

  9. Documentation of the Goddard Laboratory for atmospheres fourth-order two-layer shallow water model

    NASA Technical Reports Server (NTRS)

    Takacs, L. L. (Compiler)

    1986-01-01

    The theory and numerical treatment used in the 2-level GLA fourth-order shallow water model are described. This model was designed to emulate the horizontal finite differences used by the GLA Fourth-Order General Circulation Model (Kalnay et al., 1983) in addition to its grid structure, form of high-latitude and global filtering, and time-integration schemes. A user's guide is also provided instructing the user on how to create initial conditions, execute the model, and post-process the data history.

  10. Energy conserving and potential-enstrophy dissipating schemes for the shallow water equations

    NASA Technical Reports Server (NTRS)

    Arakawa, Akio; Hsu, Yueh-Jiuan G.

    1990-01-01

    To incorporate potential enstrophy dissipation into discrete shallow water equations with no or arbitrarily small energy dissipation, a family of finite-difference schemes have been derived with which potential enstrophy is guaranteed to decrease while energy is conserved (when the mass flux is nondivergent and time is continuous). Among this family of schemes, there is a member that minimizes the spurious impact of infinite potential vorticities associated with infinitesimal fluid depth. The scheme is, therefore, useful for problems in which the free surface may intersect with the lower boundary.

  11. Unique laminar-flow stability limit based shallow-water theory

    USGS Publications Warehouse

    Chen, Cheng-lung

    1993-01-01

    Two approaches are generally taken in deriving the stability limit for the Froude member (Fs) for laminar sheet flow. The first approach used the Orr-Sommerfeld equation, while the second uses the cross-section-averaged equations of continuity and motion. Because both approaches are based on shallow-water theory, the values of Fs obtained from both approaches should be identical, yet in the literature they are not. This suggests that a defect exists in at least one of the two approaches. After examining the governing equations used in both approaches, one finds that the existing cross-section -averaged equation of motion is dependent on the frame of reference.

  12. Flexural-gravity circumferential and radial oscillations of a plate floating in shallow water

    NASA Astrophysics Data System (ADS)

    Shemelina, V. O.

    2016-05-01

    The natural and quasi-natural flexural-gravity oscillations of an elastic plate floating on a liquid surface have been studied numerically and analytically based on shallow-water long-wave theory. Dependences of the natural and quasi-natural frequencies on the geometrical parameters of the oscillation region have been investigated for the cases of bounded and unbounded basins. The effect of bottom irregularity in the form of a circular cylinder or a circular truncated cone on the natural and quasi-natural frequencies and functions has been examined.

  13. A discontinuous Galerkin method for the shallow water equations in spherical triangular coordinates

    NASA Astrophysics Data System (ADS)

    Läuter, Matthias; Giraldo, Francis X.; Handorf, Dörthe; Dethloff, Klaus

    2008-12-01

    A global model of the atmosphere is presented governed by the shallow water equations and discretized by a Runge-Kutta discontinuous Galerkin method on an unstructured triangular grid. The shallow water equations on the sphere, a two-dimensional surface in R3, are locally represented in terms of spherical triangular coordinates, the appropriate local coordinate mappings on triangles. On every triangular grid element, this leads to a two-dimensional representation of tangential momentum and therefore only two discrete momentum equations. The discontinuous Galerkin method consists of an integral formulation which requires both area (elements) and line (element faces) integrals. Here, we use a Rusanov numerical flux to resolve the discontinuous fluxes at the element faces. A strong stability-preserving third-order Runge-Kutta method is applied for the time discretization. The polynomial space of order k on each curved triangle of the grid is characterized by a Lagrange basis and requires high-order quadature rules for the integration over elements and element faces. For the presented method no mass matrix inversion is necessary, except in a preprocessing step. The validation of the atmospheric model has been done considering standard tests from Williamson et al. [D.L. Williamson, J.B. Drake, J.J. Hack, R. Jakob, P.N. Swarztrauber, A standard test set for numerical approximations to the shallow water equations in spherical geometry, J. Comput. Phys. 102 (1992) 211-224], unsteady analytical solutions of the nonlinear shallow water equations and a barotropic instability caused by an initial perturbation of a jet stream. A convergence rate of O(Δx) was observed in the model experiments. Furthermore, a numerical experiment is presented, for which the third-order time-integration method limits the model error. Thus, the time step Δt is restricted by both the CFL-condition and accuracy demands. Conservation of mass was shown up to machine precision and energy conservation

  14. Preliminary Computational Fluid Dynamics (CFD) Simulation of EIIB Push Barge in Shallow Water

    NASA Astrophysics Data System (ADS)

    Beneš, Petr; Kollárik, Róbert

    2011-12-01

    This study presents preliminary CFD simulation of EIIb push barge in inland conditions using CFD software Ansys Fluent. The RANSE (Reynolds Averaged Navier-Stokes Equation) methods are used for the viscosity solution of turbulent flow around the ship hull. Different RANSE methods are used for the comparison of their results in ship resistance calculations, for selecting the appropriate and removing inappropriate methods. This study further familiarizes on the creation of geometrical model which considers exact water depth to vessel draft ratio in shallow water conditions, grid generation, setting mathematical model in Fluent and evaluation of the simulations results.

  15. Estimating shallow water sound power levels and mitigation radii for the R/V Marcus G. Langseth using an 8 km long MCS streamer

    NASA Astrophysics Data System (ADS)

    Crone, Timothy J.; Tolstoy, Maya; Carton, Helene

    2014-10-01

    seismic surveys in shallow-water environments, the complexity of local geology and seafloor topography can make it difficult to accurately predict associated sound levels and establish appropriate mitigation radii required to ensure the safety of local marine protected species. This is primarily because necessary detailed information regarding the local seafloor topography and subseafloor geology is often unavailable before a survey begins. One potential solution to this problem is to measure received levels using the ship's multichannel seismic (MCS) streamer, which could allow for the dynamic real-time determination of sound levels and mitigation radii while a survey is underway. We analyze R/V Langseth streamer data collected on the shelf and slope near the Washington coast during the Cascadia Open-Access Seismic Transects (COAST) and Ridge2Trench projects to measure received levels up to a distance of approximately 8 km from the sound source array. We establish methods to filter, clean, and process streamer data to accurately determine received power levels and confidently establish mitigation radii. We show that in shallow water measured power levels can fluctuate due to the influence of seafloor topographic features, but that the use of the streamer for the establishment of dynamic mitigation radii is feasible and should be further pursued. The establishment of mitigation radii based on local conditions may help to maximize the safety of marine protected species while also maximizing the ability of researchers to conduct seismic studies.

  16. Limited effects of a keystone species: Trends of sea otters and kelp forests at the Semichi Islands, Alaska

    USGS Publications Warehouse

    Konar, B.

    2000-01-01

    Sea otters are well known as a keystone species because of their ability to transform sea urchin-dominated communities into kelp-dominated communities by preying on sea urchins and thus reducing the intensity of herbivory. After being locally extinct for more than a century, sea otters re-colonized the Semichi Islands in the Aleutian Archipelago, Alaska in the early 1990s. Here, otter populations increased to about 400 individuals by 1994, but rapidly declined to about 100 by 1997. Roughly 7 yr after initial otter re-colonization, there were only marginal changes in sea urchin biomass, mean maximum test size, and kelp density. These small changes may be the first steps in the cascading effects on community structure typically found with the invasion of a keystone species. However, no wholesale change in community structure occurred following re-colonization and growth of the sea otter population. Instead, this study describes a transition state and identifies factors such as keystone species density and residence time that can be important in dictating the degree to which otter effects are manifested.

  17. Microbial response to limited nutrients in shallow water immediately after the end-Permian mass extinction.

    PubMed

    Jia, C; Huang, J; Kershaw, S; Luo, G; Farabegoli, E; Perri, M C; Chen, L; Bai, X; Xie, S

    2012-01-01

    Previous work indicates that a variety of microbes bloomed in the oceans after the end-Permian faunal mass extinction, but evidence is sporadically documented. Thus, the nature and geographic distribution of such microbes and their associations are unclear, addressed in this study using a series of biomarker groups. On the basis of microbial biomarker records of the 2-methylhopane index, evidence is presented for cyanobacterial blooms in both the western and eastern Tethys Sea and in both shallow and deep waters, after the mass extinction. The enhanced relative abundance of C(28) (expressed by the C(28) /C(29) ratio of) regular steranes suggests a bloom of prasinophyte algae occurred immediately after the end-Permian faunal extinction, comparable with those observed in some other mass extinctions in Phanerozoic. Significantly, cyanobacteria and prasinophyte algae show a synchronized onset of bloom in the shallow water Bulla section, north Italy, inferring for the first time their coupled response to the biotic crisis and the associated environmental conditions. However, in Meishan of Zhejiang Province in south China, the bloom declined earlier than in Bulla. The association of increased 2-methylhopane index with a negative shift in the nitrogen isotope composition infers a scenario of enhanced nitrogen fixation by cyanobacteria immediately after the faunal mass extinction. N(2) fixation by cyanobacteria is here interpreted to have provided prasinophyte algae with ammonium in nutrient-limited shallow waters, and thus caused their associated blooms.

  18. Comparison between TVD-MacCormack and ADI-type solvers of the shallow water equations

    NASA Astrophysics Data System (ADS)

    Liang, Dongfang; Falconer, Roger A.; Lin, Binliang

    2006-12-01

    A total variation diminishing (TVD) modification of the MacCormack scheme is developed for simulating shallow water dynamics on a uniform Cartesian grid. Results obtained using conventional and deviatoric forms of the conservative non-linear shallow water equations (SWEs) are compared for cases where the bed has a varying topography. The comparisons demonstrate that the deviatoric form of the SWEs gives more accurate results than the conventional form, in the absence of numerical balancing of the flux-gradient and source terms. A further comparison is undertaken between the TVD-MacCormack model and an alternating direction implicit (ADI) model for cases involving steep-fronted shallow flows. It is demonstrated that the ADI model is unable to predict trans-critical flows correctly, and artificial viscosity has to be introduced to remove spurious oscillations. The TVD-MacCormack model reproduces all flow regimes accurately. Finally, the TVD-MacCormack model is used to predict a laboratory-scale dyke break undertaken at Delft University of Technology. The predictions agree closely with the experimental data, and are in excellent agreement with results from an alternative Godunov-type model.

  19. Airborne mapping of shallow water bathymetry in the optically complex waters of the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Vahtmäe, Ele; Kutser, Tiit

    2016-04-01

    Accurate determination of the water depth is important for marine spatial planning, producing maritime charts for navigation, seabed morphology studies, and carrying out different activities in the coastal waters. Bathymetric data are lacking foremost in the shallow water regions as those areas are often inaccessible to the hydrographic ships carrying out echo sounding measurements. Remote sensing technology can be used as an alternative for shallow water bathymetry mapping. Varieties of empirical methods have been proposed for bathymetry retrieval, where the relationship between remotely sensed radiance of the water body and the water depth at sampled locations was established empirically. Two most widely used depth derivation methods, the linear band model proposed by Lyzenga (1978, 1985, 2006), and the log-transformed band ratio model proposed by Stumpf et al. (2003), were applied to the different preprocessing level airborne Hyspex hyperspectral images from the optically complex Baltic Sea area and evaluated for accuracy. Results showed that the Lyzenga linear band model outperformed the Stumpf log-transformed band ratio model. The best results were achieved with the atmospherically corrected images. The application of glint correction did not improve, but even reduced the accuracy of bathymetric maps.

  20. Analysis of nonlinear shallow water waves in a tank by concentrated mass model

    NASA Astrophysics Data System (ADS)

    Ishikawa, Satoshi; Kondou, Takahiro; Matsuzaki, Kenichiro; Yamamura, Satoshi

    2016-06-01

    The sloshing of liquid in a tank is an important engineering problem. For example, liquid storage tanks in industrial facilities can be damaged by earthquakes, and conversely liquid tanks, called tuned liquid damper, are often used as passive mechanical dampers. The water depth is less often than the horizontal length of the tank. In this case, shallow water wave theory can be applied, and the results indicate that the surface waveform in a shallow excited tank exhibits complex behavior caused by nonlinearity and dispersion of the liquid. This study aims to establish a practical analytical model for this phenomenon. A model is proposed that consists of masses, connecting nonlinear springs, connecting dampers, base support dampers, and base support springs. The characteristics of the connecting nonlinear springs are derived from the static and dynamic pressures. The advantages of the proposed model are that nonlinear dispersion is considered and that the problem of non-uniform water depth can be addressed. To confirm the validity of the model, numerical results obtained from the model are compared with theoretical values of the natural frequencies of rectangular and triangular tanks. Numerical results are also compared with experimental results for a rectangular tank. All computational results agree well with the theoretical and experimental results. Therefore, it is concluded that the proposed model is valid for the numerical analysis of nonlinear shallow water wave problems.

  1. Determination of bed elevation in the enhanced lattice Boltzmann method for the shallow-water equations

    NASA Astrophysics Data System (ADS)

    Zhou, Jian Guo; Liu, Haifei

    2013-08-01

    The bed slope in the shallow-water equations reflects the bed topography. It is not a flow variable and cannot be determined in the solution to the flow equations. An immovable nonflat bed affects a flow as a force term, but the flow has no effect on it. Only when the bed term is correctly represented in a numerical method can it generate an accurate solution. In the enhanced lattice Boltzmann method for the shallow-water equations (eLABSWE), using an individual Chapman-Enskog analysis, it is found that such a correct representation can be achieved by retaining Cα=2λα, in which Cα is the coefficient for bed elevation in the lattice Boltzmann equation and λα is that for the water depth in the local equilibrium distribution function. The finding has been validated through simulations of a water at rest in a dish-shaped lake, a wind-induced shallow flow in the same lake, and a steady flow over a two-dimensional bed hump.

  2. Determination of bed elevation in the enhanced lattice Boltzmann method for the shallow-water equations.

    PubMed

    Zhou, Jian Guo; Liu, Haifei

    2013-08-01

    The bed slope in the shallow-water equations reflects the bed topography. It is not a flow variable and cannot be determined in the solution to the flow equations. An immovable nonflat bed affects a flow as a force term, but the flow has no effect on it. Only when the bed term is correctly represented in a numerical method can it generate an accurate solution. In the enhanced lattice Boltzmann method for the shallow-water equations (eLABSWE), using an individual Chapman-Enskog analysis, it is found that such a correct representation can be achieved by retaining C(α)=2λ(α), in which C(α) is the coefficient for bed elevation in the lattice Boltzmann equation and λ(α) is that for the water depth in the local equilibrium distribution function. The finding has been validated through simulations of a water at rest in a dish-shaped lake, a wind-induced shallow flow in the same lake, and a steady flow over a two-dimensional bed hump.

  3. Analysis of spurious oscillation modes for the shallow water and Navier-Stokes equations

    USGS Publications Warehouse

    Walters, R.A.; Carey, G.F.

    1983-01-01

    The origin and nature of spurious oscillation modes that appear in mixed finite element methods are examined. In particular, the shallow water equations are considered and a modal analysis for the one-dimensional problem is developed. From the resulting dispersion relations we find that the spurious modes in elevation are associated with zero frequency and large wave number (wavelengths of the order of the nodal spacing) and consequently are zero-velocity modes. The spurious modal behavior is the result of the finite spatial discretization. By means of an artificial compressibility and limiting argument we are able to resolve the similar problem for the Navier-Stokes equations. The relationship of this simpler analysis to alternative consistency arguments is explained. This modal approach provides an explanation of the phenomenon in question and permits us to deduce the cause of the very complex behavior of spurious modes observed in numerical experiments with the shallow water equations and Navier-Stokes equations. Furthermore, this analysis is not limited to finite element formulations, but is also applicable to finite difference formulations. ?? 1983.

  4. Airborne mapping of shallow water bathymetry in the optically complex waters of the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Vahtmäe, Ele; Kutser, Tiit

    2016-04-01

    Accurate determination of the water depth is important for marine spatial planning, producing maritime charts for navigation, seabed morphology studies, and carrying out different activities in the coastal waters. Bathymetric data are lacking foremost in the shallow water regions as those areas are often inaccessible to the hydrographic ships carrying out echo sounding measurements. Remote sensing technology can be used as an alternative for shallow water bathymetry mapping. Varieties of empirical methods have been proposed for bathymetry retrieval, where the relationship between remotely sensed radiance of the water body and the water depth at sampled locations was established empirically. Two most widely used depth derivation methods, the linear band model proposed by Lyzenga (1978, 1985, 2006), and the log-transformed band ratio model proposed by Stumpf et al. (2003), were applied to the different preprocessing level airborne Hyspex hyperspectral images from the optically complex Baltic Sea area and evaluated for accuracy. Results showed that the Lyzenga linear band model outperformed the Stumpf log-transformed band ratio model. The best results were achieved with the atmospherically corrected images. The application of glint correction did not improve, but even reduced the accuracy of bathymetric maps.

  5. A finite element method for solving the shallow water equations on the sphere

    NASA Astrophysics Data System (ADS)

    Comblen, Richard; Legrand, Sébastien; Deleersnijder, Eric; Legat, Vincent

    Within the framework of ocean general circulation modeling, the present paper describes an efficient way to discretize partial differential equations on curved surfaces by means of the finite element method on triangular meshes. Our approach benefits from the inherent flexibility of the finite element method. The key idea consists in a dialog between a local coordinate system defined for each element in which integration takes place, and a nodal coordinate system in which all local contributions related to a vectorial degree of freedom are assembled. Since each element of the mesh and each degree of freedom are treated in the same way, the so-called pole singularity issue is fully circumvented. Applied to the shallow water equations expressed in primitive variables, this new approach has been validated against the standard test set defined by [Williamson, D.L., Drake, J.B., Hack, J.J., Jakob, R., Swarztrauber, P.N., 1992. A standard test set for numerical approximations to the shallow water equations in spherical geometry. Journal of Computational Physics 102, 211-224]. Optimal rates of convergence for the P1NC-P1 finite element pair are obtained, for both global and local quantities of interest. Finally, the approach can be extended to three-dimensional thin-layer flows in a straightforward manner.

  6. Tools to Perform Local Dense 3D Reconstruction of Shallow Water Seabed.

    PubMed

    Avanthey, Loïca; Beaudoin, Laurent; Gademer, Antoine; Roux, Michel

    2016-01-01

    Tasks such as distinguishing or identifying individual objects of interest require the production of dense local clouds at the scale of these individual objects of interest. Due to the physical and dynamic properties of an underwater environment, the usual dense matching algorithms must be rethought in order to be adaptive. These properties also imply that the scene must be observed at close range. Classic robotized acquisition systems are oversized for local studies in shallow water while the systematic acquisition of data is not guaranteed with divers. We address these two major issues through a multidisciplinary approach. To efficiently acquire on-demand stereoscopic pairs using simple logistics in small areas of shallow water, we devised an agile light-weight dedicated system which is easy to reproduce. To densely match two views in a reliable way, we devised a reconstruction algorithm that automatically accounts for the dynamics, variability and light absorption of the underwater environment. Field experiments in the Mediterranean Sea were used to assess the results.

  7. A central-upwind scheme with artificial viscosity for shallow-water flows in channels

    NASA Astrophysics Data System (ADS)

    Hernandez-Duenas, Gerardo; Beljadid, Abdelaziz

    2016-10-01

    We develop a new high-resolution, non-oscillatory semi-discrete central-upwind scheme with artificial viscosity for shallow-water flows in channels with arbitrary geometry and variable topography. The artificial viscosity, proposed as an alternative to nonlinear limiters, allows us to use high-resolution reconstructions at a low computational cost. The scheme recognizes steady states at rest when a delicate balance between the source terms and flux gradients occurs. This balance in irregular geometries is more complex than that taking place in channels with vertical walls. A suitable technique is applied by properly taking into account the effects induced by the geometry. Incorporating the contributions of the artificial viscosity and an appropriate time step restriction, the scheme preserves the positivity of the water's depth. A description of the proposed scheme, its main properties as well as the proofs of well-balance and the positivity of the scheme are provided. Our numerical experiments confirm stability, well-balance, positivity-preserving properties and high resolution of the proposed method. Comparisons of numerical solutions obtained with the proposed scheme and experimental data are conducted, showing a good agreement. This scheme can be applied to shallow-water flows in channels with complex geometry and variable bed topography.

  8. A shallow water model for magnetohydrodynamic flows with turbulent Hartmann layers

    NASA Astrophysics Data System (ADS)

    Pothérat, Alban; Schweitzer, Jean-Philippe

    2011-05-01

    We establish a shallow water model for flows of electrically conducting fluids in homogeneous static magnetic fields that are confined between two parallel planes where turbulent Hartmann layers are present. This is achieved by modelling the wall shear stress in these layers using Prandtl's mixing length model, as did by Alboussière and Lingwood [Phys. Fluids 12(6), 1535 (2000)]. The idea for this new model arose from the failure of previous shallow water models that assumed a laminar Hartmann layer to recover the correct amount of dissipation found in some regimes of the MATUR experiment. This experiment, conducted by Messadek and Moreau [J. Fluid Mech. 456, 137 (2002)], consisted of a thin layer of mercury electrically driven in differential rotation in a transverse magnetic field. Numerical simulations of our new model in the configuration of this experiment allowed us to recover experimental values of both the global angular momentum and the local velocity up to a few percent when the Hartmann layer was in a sufficiently well developed turbulent state. We thus provide an evidence that the unexplained level of dissipation observed in MATUR in these specific regimes was caused by turbulence in the Hartmann layers. A parametric analysis of the flow, made possible by the simplicity of our model, also revealed that turbulent friction in the Hartmann layer prevented quasi-2D turbulence from becoming more intense and limited the size of the large scales.

  9. Numerical simulations of dynamic coupling between shallow-water sloshing and horizontal vessel motion with baffles

    NASA Astrophysics Data System (ADS)

    Alemi Ardakani, H.; Turner, M. R.

    2016-06-01

    The coupled motion between shallow water sloshing in a moving vessel with baffles and the vessel dynamics is considered. Here the vessel dynamics is restricted to horizontal motion such as in tuned liquid dampers. It was shown by (Turner et al 2013 Phys. Fluids 25 112102) that partitioning a moving vessel into n separate compartments leads to an interesting dynamical behaviour of the system. Also, under particular input parameter values an internal (n+1)-fold 1:\\cdots :1 resonance can be generated, where the frequency of the sloshing fluid in each compartment is equal, and equal to the frequency of the vessel itself. Here the form of the sloshing eigenmodes at this resonance are derived in the shallow-water limit. Using the Lagrangian formulation of the problem, an efficient numerical algorithm is implemented to solve the fully nonlinear system of equations based on the implicit midpoint rule. This algorithm is simple, fast and maintains the energy partition between the vessel and the fluid over long times. In this work numerical results are presented for dynamical vessel/sloshing motion attached to a nonlinear spring.

  10. Tracking the sparseness of the underlying support in shallow water acoustic communications

    NASA Astrophysics Data System (ADS)

    Sen Gupta, Ananya; Preisig, James

    2012-06-01

    Tracking the shallow water acoustic channel in real time poses an open challenge towards improving the data rate in high-speed underwater communications. Multipath arrivals due to reflection from the moving ocean surface and the sea bottom, along with surface wave focusing events, lead to a rapidly fluctuating complex-valued channel impulse response and associated Delay-Doppler spread function that follow heavy-tailed distributions. The sparse channel or Delay-Doppler spread function components are difficult to track in real time using popular sparse sensing techniques due to the coherent and dynamic nature of the optimization problem as well as the timevarying and potentially non-stationary sparseness of the underlying support. We build on related work using non-convex optimization to track the shallow water acoustic channel in real time at high precision and tracking speed to develop strategies to estimate the non-stationary sparseness of the underlying support. Specifically, we employ non-convex manifold navigational techniques to estimate the support sparseness to balance the weighting between the L1 norm of the tracked coefficients and the L2 norm of the estimation error. We explore the efficacy of our methods against experimental field data collected at 200 meters range, 15 meters depth and varying wind conditions.

  11. Initial phenomenon of roll wave of shallow water on inclined channel

    NASA Astrophysics Data System (ADS)

    Arai, M.

    2015-12-01

    1. INTRODUCTION Intermittent surges of debris flows are observed in mountain regions. This type of flow is considered to be characterized by developing roll waves (surges) due to flow instabilities and by a weak sediment concentrations. For a understanding of initial phenomenon and fluctuation of the flow depth, wave equations and understanding characteristics of the solutions are needed. It is presented a wave equation and some solutions of roll waves based on shallow water momentum equation. These results show an improved understanding of the phenomena and wave equation of developing roll wave. 2. WAVE EQUATION AND SOME SOLUTIONS Considering momentam equation of shallow water on inclined channel and using reductive perturbation method, a wave equation which is a kind of KdV-Burgers equation was obtained. For on long wave velocity, some analitical solutions and numerical solutions ware obtained. Relationships of wave equation, it's solutions and phenomenon are discussed. 3. CONCLUSION A wave of minute disturbance on long wave velocity is governed by Burgers equation. For not fixed boundary condition and initial wave condition of not multiple wave number, an initial wave is deformed to a wave which wave number is one. The wave is caused a phase and the phenomena is shifted from Burgers equation to KdV-Burgers equation which has the characteristic of the solitary wave.

  12. Tools to Perform Local Dense 3D Reconstruction of Shallow Water Seabed ‡

    PubMed Central

    Avanthey, Loïca; Beaudoin, Laurent; Gademer, Antoine; Roux, Michel

    2016-01-01

    Tasks such as distinguishing or identifying individual objects of interest require the production of dense local clouds at the scale of these individual objects of interest. Due to the physical and dynamic properties of an underwater environment, the usual dense matching algorithms must be rethought in order to be adaptive. These properties also imply that the scene must be observed at close range. Classic robotized acquisition systems are oversized for local studies in shallow water while the systematic acquisition of data is not guaranteed with divers. We address these two major issues through a multidisciplinary approach. To efficiently acquire on-demand stereoscopic pairs using simple logistics in small areas of shallow water, we devised an agile light-weight dedicated system which is easy to reproduce. To densely match two views in a reliable way, we devised a reconstruction algorithm that automatically accounts for the dynamics, variability and light absorption of the underwater environment. Field experiments in the Mediterranean Sea were used to assess the results. PMID:27196913

  13. Orientation effects on linear time-reversing array retrofocusing in shallow water

    NASA Astrophysics Data System (ADS)

    Dungan, Michael R.; Dowling, David R.

    2002-11-01

    A time-reversing array (TRA) can retrofocus acoustic energy, in both time and space, to the original sound-source location without any environmental information. This paper presents results from an analytical and computational investigation into the effects that array orientation has on linear TRA retrofocusing in shallow water environments. A linear TRA has three limiting orthogonal orientations with respect to a distant sound source in a shallow water waveguide: vertical, endfire, and broadside. Here, TRA retrofocus characteristics are predicted for monochromatic sound propagation in a Pekeris waveguide using a modal sum Green's function and in a more realistic sound channel having vertical sound speed variation using a computed Green's function. Both analytical and computational results are compared for the three orthogonal array orientations with vertical arrays performing best. Differences in TRA retrofocusing performance in the three orientations are primarily determined by geometrical considerations and the extra mode-shape weighting inherent in the back-propagated field of horizontal TRAs. copyright 2002 Acoustical Society of America.

  14. Simulation of arrested salt wedges with a multi-layer Shallow Water Lattice Boltzmann model

    NASA Astrophysics Data System (ADS)

    Prestininzi, P.; Montessori, A.; La Rocca, M.; Sciortino, G.

    2016-10-01

    The ability to accurately and efficiently model the intrusion of salt wedges into river beds is crucial to assay its interaction with human activities and the natural environment. We present a 2D multi-layer Shallow Water Lattice Boltzmann (SWLB) model able to predict the salt wedge intrusion in river estuaries. The formulation usually employed for the simulation of gravity currents is here equipped with proper boundary conditions to handle both the downstream seaside outlet and the upstream river inlet. Firstly, the model is validated against highly accurate semi-analytical solutions of the steady state 1D two-layer Shallow Water model. Secondly, the model is applied to a more complex, fully 3D geometry, to assess its capability to handle realistic cases. The simple formulation proposed for the shear interlayer stress is proven to be consistent with the general 3D viscous solution. In addition to the accuracy, the model inherits the efficiency of the Lattice Boltzmann approach to fluid dynamics problems.

  15. Tools to Perform Local Dense 3D Reconstruction of Shallow Water Seabed.

    PubMed

    Avanthey, Loïca; Beaudoin, Laurent; Gademer, Antoine; Roux, Michel

    2016-01-01

    Tasks such as distinguishing or identifying individual objects of interest require the production of dense local clouds at the scale of these individual objects of interest. Due to the physical and dynamic properties of an underwater environment, the usual dense matching algorithms must be rethought in order to be adaptive. These properties also imply that the scene must be observed at close range. Classic robotized acquisition systems are oversized for local studies in shallow water while the systematic acquisition of data is not guaranteed with divers. We address these two major issues through a multidisciplinary approach. To efficiently acquire on-demand stereoscopic pairs using simple logistics in small areas of shallow water, we devised an agile light-weight dedicated system which is easy to reproduce. To densely match two views in a reliable way, we devised a reconstruction algorithm that automatically accounts for the dynamics, variability and light absorption of the underwater environment. Field experiments in the Mediterranean Sea were used to assess the results. PMID:27196913

  16. Travel-time tomography in shallow water: experimental demonstration at an ultrasonic scale.

    PubMed

    Roux, Philippe; Iturbe, Ion; Nicolas, Barbara; Virieux, Jean; Mars, Jérôme I

    2011-09-01

    Acoustic tomography in a shallow ultrasonic waveguide is demonstrated at the laboratory scale between two source-receiver arrays. At a 1/1,000 scale, the waveguide represents a 1.1-km-long, 52-m-deep ocean acoustic channel in the kilohertz frequency range. Two coplanar arrays record the transfer matrix in the time domain of the waveguide between each pair of source-receiver transducers. A time-domain, double-beamforming algorithm is simultaneously performed on the source and receiver arrays that projects the multi-reflected acoustic echoes into an equivalent set of eigenrays, which are characterized by their travel times and their launch and arrival angles. Travel-time differences are measured for each eigenray every 0.1 s when a thermal plume is generated at a given location in the waveguide. Travel-time tomography inversion is then performed using two forward models based either on ray theory or on the diffraction-based sensitivity kernel. The spatially resolved range and depth inversion data confirm the feasibility of acoustic tomography in shallow water. Comparisons are made between inversion results at 1 and 3 MHz with the inversion procedure using ray theory or the finite-frequency approach. The influence of surface fluctuations at the air-water interface is shown and discussed in the framework of shallow-water ocean tomography.

  17. Assessment of Shallow-Water Habitat Availability in Modified Dike Structures, Lower Missouri River, 2004

    USGS Publications Warehouse

    Jacobson, Robert B.; Elliott, Caroline M.; Johnson, Harold E.

    2004-01-01

    This study documented the effects of wing-dike notching on the availabilit of shallow water habitat in the Lower Missouri River. Five wing dikes were surveyed in late May 2004 after they were notched in early May as part of shallow-water habitat (SWH) rehabilitation activities undertaken by the U.S. Army Corps of Engineers. Surveys included high-resolution hydroacoustic depth, velocity, and substrate mapping. Relations of bottom elevations within the wing dike fields to index discharges and water-surface elevations indicate that little habitat meeting the SWH definition was created immediately following notching. This result is not unexpected, as significant geomorphic adjustment may require large flow events. Depth, velocity, and substrate measurements in the post-rehabilitation time period provide baseline data for monitoring ongoing changes. Differences in elevation and substrate were noted at all sites. Most dike fields showed substantial aggradation and replacement of mud substrate with sandier sediment, although the changes did not result in increased availability of SWH at the index discharge. It is not known how much of the elevation and substrate changes can be attributed directly to notching and how much would result from normal sediment transport variation.

  18. Parallel iterative solution for h and p approximations of the shallow water equations

    USGS Publications Warehouse

    Barragy, E.J.; Walters, R.A.

    1998-01-01

    A p finite element scheme and parallel iterative solver are introduced for a modified form of the shallow water equations. The governing equations are the three-dimensional shallow water equations. After a harmonic decomposition in time and rearrangement, the resulting equations are a complex Helmholz problem for surface elevation, and a complex momentum equation for the horizontal velocity. Both equations are nonlinear and the resulting system is solved using the Picard iteration combined with a preconditioned biconjugate gradient (PBCG) method for the linearized subproblems. A subdomain-based parallel preconditioner is developed which uses incomplete LU factorization with thresholding (ILUT) methods within subdomains, overlapping ILUT factorizations for subdomain boundaries and under-relaxed iteration for the resulting block system. The method builds on techniques successfully applied to linear elements by introducing ordering and condensation techniques to handle uniform p refinement. The combined methods show good performance for a range of p (element order), h (element size), and N (number of processors). Performance and scalability results are presented for a field scale problem where up to 512 processors are used. ?? 1998 Elsevier Science Ltd. All rights reserved.

  19. Well-balanced shallow water flow simulation on quadtree cut cell grids

    NASA Astrophysics Data System (ADS)

    An, Hyunuk; Yu, Soonyoung

    2012-04-01

    A well-balanced shallow water flow model on quadtree cut cell grids is presented. The Cartesian cut cell method is applied due to its flexibility in treating curvilinear boundaries. In order to preserve a lake-at-rest and the positivity of water depths in drying/wetting zones, the hydrostatic reconstruction proposed by Audusse et al. [1] is implemented on cut cell grids. In addition, the gradient construction method on cut cells proposed by Causon et al. [8] is modified due to the spurious calculation when a solid boundary is nearly parallel to grids. The numerical schemes mentioned above are employed in Gerris which is open source free software and provides a shallow water solver on adaptive quadtree grids. The applied numerical schemes are validated using four test simulations: still water in an inclined domain; oscillation in a parabolic container; shock reflection by a circular cylinder; flash flood experiment in a model city. The simulation results are compared with analytical solutions, experiment data and the results simulated by other researchers.

  20. High-order nite volume WENO schemes for the shallow water equations with dry states

    SciTech Connect

    Xing, Yulong; Shu, Chi-wang

    2011-01-01

    The shallow water equations are used to model flows in rivers and coastal areas, and have wide applications in ocean, hydraulic engineering, and atmospheric modeling. These equations have still water steady state solutions in which the flux gradients are balanced by the source term. It is desirable to develop numerical methods which preserve exactly these steady state solutions. Another main difficulty usually arising from the simulation of dam breaks and flood waves flows is the appearance of dry areas where no water is present. If no special attention is paid, standard numerical methods may fail near dry/wet front and produce non-physical negative water height. A high-order accurate finite volume weighted essentially non-oscillatory (WENO) scheme is proposed in this paper to address these difficulties and to provide an efficient and robust method for solving the shallow water equations. A simple, easy-to-implement positivity-preserving limiter is introduced. One- and two-dimensional numerical examples are provided to verify the positivity-preserving property, well-balanced property, high-order accuracy, and good resolution for smooth and discontinuous solutions.

  1. Semi-implicit finite difference methods for three-dimensional shallow water flow

    USGS Publications Warehouse

    Casulli, Vincenzo; Cheng, Ralph T.

    1992-01-01

    A semi-implicit finite difference method for the numerical solution of three-dimensional shallow water flows is presented and discussed. The governing equations are the primitive three-dimensional turbulent mean flow equations where the pressure distribution in the vertical has been assumed to be hydrostatic. In the method of solution a minimal degree of implicitness has been adopted in such a fashion that the resulting algorithm is stable and gives a maximal computational efficiency at a minimal computational cost. At each time step the numerical method requires the solution of one large linear system which can be formally decomposed into a set of small three-diagonal systems coupled with one five-diagonal system. All these linear systems are symmetric and positive definite. Thus the existence and uniquencess of the numerical solution are assured. When only one vertical layer is specified, this method reduces as a special case to a semi-implicit scheme for solving the corresponding two-dimensional shallow water equations. The resulting two- and three-dimensional algorithm has been shown to be fast, accurate and mass-conservative and can also be applied to simulate flooding and drying of tidal mud-flats in conjunction with three-dimensional flows. Furthermore, the resulting algorithm is fully vectorizable for an efficient implementation on modern vector computers.

  2. Microbial response to limited nutrients in shallow water immediately after the end-Permian mass extinction.

    PubMed

    Jia, C; Huang, J; Kershaw, S; Luo, G; Farabegoli, E; Perri, M C; Chen, L; Bai, X; Xie, S

    2012-01-01

    Previous work indicates that a variety of microbes bloomed in the oceans after the end-Permian faunal mass extinction, but evidence is sporadically documented. Thus, the nature and geographic distribution of such microbes and their associations are unclear, addressed in this study using a series of biomarker groups. On the basis of microbial biomarker records of the 2-methylhopane index, evidence is presented for cyanobacterial blooms in both the western and eastern Tethys Sea and in both shallow and deep waters, after the mass extinction. The enhanced relative abundance of C(28) (expressed by the C(28) /C(29) ratio of) regular steranes suggests a bloom of prasinophyte algae occurred immediately after the end-Permian faunal extinction, comparable with those observed in some other mass extinctions in Phanerozoic. Significantly, cyanobacteria and prasinophyte algae show a synchronized onset of bloom in the shallow water Bulla section, north Italy, inferring for the first time their coupled response to the biotic crisis and the associated environmental conditions. However, in Meishan of Zhejiang Province in south China, the bloom declined earlier than in Bulla. The association of increased 2-methylhopane index with a negative shift in the nitrogen isotope composition infers a scenario of enhanced nitrogen fixation by cyanobacteria immediately after the faunal mass extinction. N(2) fixation by cyanobacteria is here interpreted to have provided prasinophyte algae with ammonium in nutrient-limited shallow waters, and thus caused their associated blooms. PMID:22168223

  3. Modeling the effects of linear shallow-water internal waves on horizontal array coherence.

    PubMed

    Rouseff, Daniel; Lunkov, Andrey A

    2015-10-01

    The coherence length of a horizontal array is the maximum separation between two points where coherent processing gives useful gain when a distant source is at broadside. In shallow water, the coherence length is limited by the environmental variability caused by several relevant oceanographic processes. In the present study, a statistical model is developed that quantifies how one oceanographic process, linear internal waves, affects the coherence length. A key input to the ocean sub-model is the vertically integrated energy density of the internal wave field. The acoustic sub-model is based on the adiabatic normal mode approximation and so should be reasonable for frequencies under 1 kHz. Numerical calculations using environmental data from the Shallow Water 2006 Experiment (SW06) show how the coherence length of individual modes varies with consequent effects on array coherence. The coherence length is shown to be a strong function of where the source and array are positioned in the water column. For a bottom-mounted array above a moderately lossy seabed, the model predicts a coherence length that depends only weakly on range, an effect observed in field experiments.

  4. A standard test set for numerical approximations to the shallow water equations in spherical geometry

    SciTech Connect

    Williamson, D.L.; Hack, J.J.; Jakob, R.; Swarztrauber, P.N. ); Drake, J.B. )

    1991-08-01

    A suite of seven test cases is proposed for the evaluation of numerical methods intended for the solution of the shallow water equations in spherical geometry. The shallow water equations exhibit the major difficulties associated with the horizontal dynamical aspects of atmospheric modeling on the spherical earth. These cases are designed for use in the evaluation of numerical methods proposed for climate modeling and to identify the potential trade-offs which must always be made in numerical modeling. Before a proposed scheme is applied to a full baroclinic atmospheric model it must perform well on these problems in comparison with other currently accepted numerical methods. The cases are presented in order of complexity. They consist of advection across the poles, steady state geostrophically balanced flow of both global and local scales, forced nonlinear advection of an isolated low, zonal flow impinging on an isolated mountain, Rossby-Haurwitz waves and observed atmospheric states. One of the cases is also identified as a computer performance/algorithm efficiency benchmark for assessing the performance of algorithms adapted to massively parallel computers. 31 refs.

  5. A Vorticity-Divergence Global Semi-Lagrangian Spectral Model for the Shallow Water Equations

    SciTech Connect

    Drake, JB

    2001-11-30

    The shallow water equations modeling flow on a sphere are useful for the development and testing of numerical algorithms for atmospheric climate and weather models. A new formulation of the shallow water equations is derived which exhibits an advective form for the vorticity and divergence. This form is particularly well suited for numerical computations using a semi-Lagrangian spectral discretization. A set of test problems, standard for the shallow water equations on a sphere, are solved and results compared with an Eulerian spectral model. The semi-Lagrangian transport method was introduced into atmospheric modeling by Robert, Henderson, and Turnbull. A formulation based on a three time level integration scheme in conjunction with a finite difference spatial discretization was studied by Ritchie. Two time level grid point schemes were derived by Bates et al. Staniforth and Cote survey developments of the application of semi-Lagrangian transport (SLT) methods for shallow water models and for numerical weather prediction. The spectral (or spherical harmonic transform) method when combined with a SLT method is particularly effective because it allows for long time steps avoiding the Courant-Friedrichs-Lewy (CFL) restriction of Eulerian methods, while retaining accurate (spectral) treatment of the spatial derivatives. A semi-implicit, semi-Lagrangian formulation with spectral spatial discretization is very effective because the Helmholz problem arising from the semi-implicit time integration can be solved cheaply in the course of the spherical harmonic transform. The combination of spectral, semi-Lagrangian transport with a semi-implicit time integration schemes was first proposed by Ritchie. A advective formulation using vorticity and divergence was introduced by Williamson and Olson. They introduce the vorticity and divergence after the application of the semi-Lagrangian discretization. The semi-Lagrangian formulation of Williamson and Olson and Bates et al. has

  6. Effects of UV radiation on the growth, photosynthetic and photoprotective components, and reproduction of the Caribbean shallow-water coral Porites furcata

    NASA Astrophysics Data System (ADS)

    Torres-Pérez, J. L.; Armstrong, R. A.

    2012-12-01

    Shallow reef corals can frequently be subjected to high doses of ultraviolet radiation [280-400 nm (UVR)] and have developed mechanisms to cope with this. Nevertheless, slight changes in this stressor may impact their physiology and ultimately their survival. Here, we present results on the effects of artificially enhanced UVR on the growth, reproduction, production of photosynthetic pigments and photoprotective compounds of the Caribbean shallow-water branching coral Porites furcata. Corals were randomly located in one of the three different treatments: normal photosynthetically active radiation (PAR) + UVR; normal PAR+ enhanced UVR; normal PAR+ depleted UVR. Growth rates were measured using the Alizarin red staining method, photosynthetic pigments as well as mycosporine-like amino acids (MAAs) were quantified through high-performance liquid chromatography, and fecundity was estimated after histological analyses. Growth and photosynthetic pigment concentration were negatively correlated with increased UVR, compared to controls exposed to normal UVR. A significant increase in MAAs was also found in colonies under enhanced UVR. Based on their respective concentrations, the primary mycosporine-glycine (λmax = 310 nm) and shinorine (λmax = 333 nm) are the main contributors to UVR absorption in this species, while the levels of the secondary MAA palythine (λmax = 320 nm) tripled toward the end of the 128 days of the experimental period. While several physical factors may influence reef coral physiology, the results suggest that slight increases in UVR can debilitate the skeletal constitution and severely reduce the fecundity of corals living in shallow waters.

  7. Selected marine mammals of Alaska: species accounts with research and management recommendations

    SciTech Connect

    Lentfer, J.W.

    1988-01-01

    This book is the result of a need seen by the Marine Mammal Commission for a current summary of the biology and status of ten species of Alaskan marine mammals, including recommendations for research and management. Its purpose is to serve as a reference and working document as conservation and management plans are developed and implemented for the ten species.

  8. Organic Nutrients and Contaminants In Subsistence Species of Alaska: Concentrations and Relationship To Food Preparation Method

    PubMed Central

    Moses, Sara K.; Whiting, Alex V.; Muir, Derek C.G.; Wang, Xiaowa; O'Hara, Todd M.

    2009-01-01

    Objectives To determine nutrient and contaminant concentrations, document concentration changes related to common preparation methods and provide a basic risk-benefit analysis for select subsistence foods consumed by residents of Kotzebue, Alaska. Study design Eleven organic nutrients and 156 persistent organic pollutants (POPs) were measured in foods derived from spotted seals and sheefish. Methods Nutrients in foodstuffs were compared to Daily Recommended Intake criteria. POPs were compared to Tolerable Daily Intake Limits (TDIL). Results Cooking, as well as absence/presence of skin during sheefish processing, altered nutrient and contaminant concentrations in seals and fish. Sheefish muscle and seal blubber were particularly rich in omega-3 fatty acids and seal liver in vitamin A. Seal liver exceeded the recommended upper limit for vitamin A. POP contribution to TDIL was <25% in all tissues except blubber, in which 4 POPs were present at >25% TDIL. No POPs exceeded TDIL in a serving of any tissue studied. The most prominent concerns identified were levels of vitamin A in spotted seal liver and certain POPs in blubber, warranting consideration when determining how much and how often these foods should be consumed. Conclusions Preparation methods altering tissues from their raw state significantly affect nutrient and contaminant concentrations, thus direct evaluation of actual food items is highly recommended to determine risk-benefits ratios of traditional diets. Traditional foods provide essential nutrients with very limited risk from contaminants. We encourage the consumption of traditional foods and urge public health agencies to develop applicable models to assess overall food safety and quality. PMID:19917188

  9. Twig and foliar biomass estimation equations for major plant species in the Tanana River basin of interior Alaska. Forest Service research paper

    SciTech Connect

    Yarie, J.; Mead, B.R.

    1988-09-01

    Equations are presented for estimating the twig, foliage, and combined biomass for 58 plant species in interior Alaska. The equations can be used for estimating biomass from percentage of the foliar cover of 10-centimeter layers in a vertical profile from 0 to 6 meters. Few differences were found in regressions of the same species between layers except when the ratio of foliar-to-twig biomass changed drastically between layers, for example, Rosa acicularis Lindl. Eighteen species were tested for regression differences between years. Thirteen showed no significant differences, five were different. Of these five, three were feather mosses for which live and dead biomass are easily confused when measured.

  10. Evolution and origin of sympatric shallow-water morphotypes of Lake Trout, Salvelinus namaycush, in Canada's Great Bear Lake

    PubMed Central

    Harris, L N; Chavarie, L; Bajno, R; Howland, K L; Wiley, S H; Tonn, W M; Taylor, E B

    2015-01-01

    Range expansion in north-temperate fishes subsequent to the retreat of the Wisconsinan glaciers has resulted in the rapid colonization of previously unexploited, heterogeneous habitats and, in many situations, secondary contact among conspecific lineages that were once previously isolated. Such ecological opportunity coupled with reduced competition likely promoted morphological and genetic differentiation within and among post-glacial fish populations. Discrete morphological forms existing in sympatry, for example, have now been described in many species, yet few studies have directly assessed the association between morphological and genetic variation. Morphotypes of Lake Trout, Salvelinus namaycush, are found in several large-lake systems including Great Bear Lake (GBL), Northwest Territories, Canada, where several shallow-water forms are known. Here, we assess microsatellite and mitochondrial DNA variation among four morphotypes of Lake Trout from the five distinct arms of GBL, and also from locations outside of this system to evaluate several hypotheses concerning the evolution of morphological variation in this species. Our data indicate that morphotypes of Lake Trout from GBL are genetically differentiated from one another, yet the morphotypes are still genetically more similar to one another compared with populations from outside of this system. Furthermore, our data suggest that Lake Trout colonized GBL following dispersal from a single glacial refugium (the Mississippian) and support an intra-lake model of divergence. Overall, our study provides insights into the origins of morphological and genetic variation in post-glacial populations of fishes and provides benchmarks important for monitoring Lake Trout biodiversity in a region thought to be disproportionately susceptible to impacts from climate change. PMID:25204304

  11. The role of Argopecten purpuratus shells structuring the soft bottom community in shallow waters of southern Peru

    NASA Astrophysics Data System (ADS)

    Lomovasky, Betina J.; Gamero, Patricia A.; Romero, Leonardo; Firstater, Fausto N.; Gamarra Salazar, Alex; Hidalgo, Fernando; Tarazona, Juan; Iribarne, Oscar O.

    2015-12-01

    Accumulation of Argopecten purpuratus shells often occurs after El Niño events in shallow waters of Independencia Bay (14°17‧S-76°10‧W; Pisco, Peru). Here we experimentally investigate the effects of their shell accumulation on macrobenthos assemblages in soft bottom, shallow areas of the bay. A field experiment (from May 2006 to May 2007), including four treatments with different coverage levels of empty shells of A. purpuratus, were randomly arranged in: (1) areas devoid of shells ("Empty" treatment: experimental control), (2) 50% of the plot area covered with shells haphazardly distributed over the bottom ("medium" treatment), (3) 100% of the plot area covered with shells, forming a 10 cm valve layer ("full" treatment) and (4) "natural control". We found a total of 124 taxa throughout the experiment. Polychaetes, crustaceans and mollusks were the most abundant groups in "natural controls", dominated by the gastropod Nassarius gayi and the polychaetes Prionospio peruana, Platynereis bicanaliculata and Mediomastus branchiferus. The abundance of individuals (N) and the species richness (S) were higher in the "medium" treatment, but only in one month under positive sea bottom thermal anomalies. Similarity analysis (Bray-Curtis) showed that "natural control", "empty" and "full" treatments were more similar among them than the "medium" treatment. Multidimensional analysis showed no clear species association among treatments and a higher grouping among the samplings of Jun-06, Aug-06 and Nov-06. Our results also showed that the commercial crab Romaleon polyodon and the polyplacophora Tonicia elegans were positively affected by shell accumulations ("medium" treatment), while the limpet Fissurella crassa was negatively affected. Our study shows that directly by changing habitat structure or indirectly by changing sediment characteristics, the addition of scallop shells to the soft bottom can modify the macrobenthic assemblage; however, the seasonal oceanographic

  12. Citreicella manganoxidans sp. nov., a novel manganese oxidizing bacterium isolated from a shallow water hydrothermal vent in Espalamaca (Azores).

    PubMed

    Rajasabapathy, Raju; Mohandass, Chellandi; Dastager, Syed Gulam; Liu, Qing; Li, Wen-Jun; Colaço, Ana

    2015-12-01

    A Gram-stain negative, non-motile, non-spore forming, aerobic and rod or narrow lemon-shaped bacterial strain, VSW210(T), was isolated from surface seawater in a shallow water hydrothermal vent region in Espalamaca (Azores). Strain VSW210(T) was found to grow optimally at 30 °C, at pH 7 and in the presence of 2-6 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain VSW210(T) clusters with the type strain Citreicella marina CK-I3-6(T) (sequence similarity value of 99.6 %), but DNA-DNA hybridization showed DNA-DNA relatedness between the strain VSW210(T) and C. marina CK-I3-6(T) to be 55.8 ± 3.2 %. The DNA G+C content of strain VSW210(T) was determined to be 67.4 mol%. The cellular fatty acid profiles of strain VSW210(T) was found to contain C18:1 ω7c (80.1 %) and C16:0 (9.2 %). The major polar lipids in strain VSW210(T) were identified as phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unidentified phospholipid. Strain VSW210(T) was found to be able to oxidize soluble Mn(II) to insoluble MnO2, which was confirmed with LBB staining. Differential phenotypic properties and genetic uniqueness revealed that this strain VSW210(T) is distinguishable from other species of the genus Citreicella. On the basis of the data presented, strain VSW210(T) is considered to represent a novel species of the genus Citreicella, for which the name Citreicella manganoxidans sp. nov. is proposed. The type strain is VSW210(T) (=KCTC 32497(T) = MCC 2286(T)). PMID:26404429

  13. Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments.

    PubMed

    Bik, Holly M; Sung, Way; De Ley, Paul; Baldwin, James G; Sharma, Jyotsna; Rocha-Olivares, Axayácatl; Thomas, W Kelley

    2012-03-01

    Microbial eukaryotes (nematodes, protists, fungi, etc., loosely referred to as meiofauna) are ubiquitous in marine sediments and probably play pivotal roles in maintaining ecosystem function. Although the deep-sea benthos represents one of the world's largest habitats, we lack a firm understanding of the biodiversity and community interactions amongst meiobenthic organisms in this ecosystem. Within this vast environment, key questions concerning the historical genetic structure of species remain a mystery, yet have profound implications for our understanding of global biodiversity and how we perceive and mitigate the impact of environmental change and anthropogenic disturbance. Using a metagenetic approach, we present an assessment of microbial eukaryote communities across depth (shallow water to abyssal) and ocean basins (deep-sea Pacific and Atlantic). Within the 12 sites examined, our results suggest that some taxa can maintain eurybathic ranges and cosmopolitan deep-sea distributions, but the majority of species appear to be regionally restricted. For Operationally Clustered Taxonomic Units (OCTUs) reporting wide distributions, there appears to be a taxonomic bias towards a small subset of taxa in most phyla; such bias may be driven by specific life history traits amongst these organisms. In addition, low genetic divergence between geographically disparate deep-sea sites suggests either a shorter coalescence time between deep-sea regions or slower rates of evolution across this vast oceanic ecosystem. While high-throughput studies allow for broad assessment of genetic patterns across microbial eukaryote communities, intragenomic variation in rRNA gene copies and the patchy coverage of reference databases currently present substantial challenges for robust taxonomic interpretations of eukaryotic data sets.

  14. Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

    PubMed Central

    Bik, Holly M.; Sung, Way; De Ley, Paul; Baldwin, James G.; Sharma, Jyotsna; Rocha-Olivares, Axayácatl; Thomas, W. Kelley

    2011-01-01

    Summary Microbial eukaryotes (nematodes, protists, fungi, etc., loosely referred to as meiofauna) are ubiquitous in marine sediments and likely play pivotal roles in maintaining ecosystem function. Although the deep-sea benthos represents one of the world’s largest habitats, we lack a firm understanding of the biodiversity and community interactions amongst meiobenthic organisms in this ecosystem. Within this vast environment key questions concerning the historical genetic structure of species remain a mystery, yet have profound implications for our understanding of global biodiversity and how we perceive and mitigate the impact of environmental change and anthropogenic disturbance. Using a metagenetic approach, we present an assessment of microbial eukaryote communities across depth (shallow water to abyssal) and ocean basins (deep-sea Pacific and Atlantic). Within the 12 sites examined, our results suggest that some taxa can maintain eurybathic ranges and cosmopolitan deep-sea distributions, but the majority of species appear to be regionally restricted. For OCTUs reporting wide distributions, there appears to be a taxonomic bias towards a small subset of taxa in most phyla; such bias may be driven by specific life history traits amongst these organisms. In addition, low genetic divergence between geographically disparate deep-sea sites suggests either a shorter coalescence time between deep-sea regions or slower rates of evolution across this vast oceanic ecosystem. While high-throughput studies allow for broad assessment of genetic patterns across microbial eukaryote communities, intragenomic variation in rRNA gene copies and the patchy coverage of reference databases currently present substantial challenges for robust taxonomic interpretations of eukaryotic datasets. PMID:21985648

  15. Toward the Application of the Implicit Particle Filter to Real Data in a Shallow Water Model of the Nearshore Ocean

    NASA Astrophysics Data System (ADS)

    Miller, R.

    2015-12-01

    Following the success of the implicit particle filter in twin experiments with a shallow water model of the nearshore environment, the planned next step is application to the intensive Sandy Duck data set, gathered at Duck, NC. Adaptation of the present system to the Sandy Duck data set will require construction and evaluation of error models for both the model and the data, as well as significant modification of the system to allow for the properties of the data set. Successful implementation of the particle filter promises to shed light on the details of the capabilities and limitations of shallow water models of the nearshore ocean relative to more detailed models. Since the shallow water model admits distinct dynamical regimes, reliable parameter estimation will be important. Previous work by other groups give cause for optimism. In this talk I will describe my progress toward implementation of the new system, including problems solved, pitfalls remaining and preliminary results

  16. Seasonal use of shallow water habitat in the Lower Snake River reservoirs by juvenile fall Chinook salmon

    USGS Publications Warehouse

    Tiffan, Kenneth F.; Connor, William P.

    2012-01-01

    The U.S. Army Corps of Engineers (COE) is preparing a long term management plan for sediments that affect the authorized project purposes of the Lower Granite, Little Goose, Lower Monumental, and Ice Harbor reservoirs (hereafter, the lower Snake River reservoirs), and the area from the mouth of the Snake River to Ice Harbor Dam. We conducted a study from spring 2010 through winter 2011 to describe the habitat use by juvenile Chinook salmon within a selected group of shallow water habitat complexes (< 6 m deep) in the lower Snake River reservoirs to help inform the long-term plan. Natural fry and parr were present within all four shallow water habitat complexes that we studied from early spring through early summer, and parr ( = 40,345 ± 18,800 [error bound]) were more abundant than fry ( = 24,615 ± 5,701). Water < 2 m deep was highly used for rearing by natural fall Chinook salmon subyearlings (fry and parr combined; hereafter natural subyearlings) based on duration of use and relative group abundances during spring and summer, whereas the 2–6 m depth interval was more highly used by migratory hatchery fall Chinook salmon subyearlings and spring, summer, and fall Chinook salmon yearlings. Overall mean spring-summer apparent density of natural subyearlings was 15.5 times higher within the < 2 m depth interval than within the 2–6 m depth interval. Density of natural subyearlings also decreased as the distance a given shallow water habitat complex was located from the riverine spawning areas increased. Reservoir-type juveniles (or fish likely destined to become reservoir-type juveniles) were present in the lower Snake River reservoirs from fall 2010 through winter 2011; however, use of shallow water habitat by reservoir-type juveniles was limited during our study. We only collected 38 reservoir-type juveniles in shallow water habitat sites in beach and lampara seines during the fall. Radiotelemetry data revealed that though many tagged fish passed shallow water

  17. On shallow water waves in a medium with time-dependent dispersion and nonlinearity coefficients.

    PubMed

    Abdel-Gawad, Hamdy I; Osman, Mohamed

    2015-07-01

    In this paper, we studied the progression of shallow water waves relevant to the variable coefficient Korteweg-de Vries (vcKdV) equation. We investigated two kinds of cases: when the dispersion and nonlinearity coefficients are proportional, and when they are not linearly dependent. In the first case, it was shown that the progressive waves have some geometric structures as in the case of KdV equation with constant coefficients but the waves travel with time dependent speed. In the second case, the wave structure is maintained when the nonlinearity balances the dispersion. Otherwise, water waves collapse. The objectives of the study are to find a wide class of exact solutions by using the extended unified method and to present a new algorithm for treating the coupled nonlinear PDE's.

  18. Improved treatment of source terms in TVD scheme for shallow water equations

    NASA Astrophysics Data System (ADS)

    Tseng, Ming-Hseng

    2004-06-01

    A number of high-resolution schemes have been recently developed to solve the homogeneous form of the shallow water equations. However, most approximate Riemann solvers experience difficulties with natural river applications if the irregular bed topography is not handled correctly. Based on the finite-difference flux-limited total variation diminishing (TVD) scheme, this paper develops a simple approach to handle the source terms for the one-dimensional open channel flow simulation with rapidly varying bed topography. Conclusions on the validity of the operator-splitting approach, the eigenvector-projection approach, and the proposed approach are presented. Analytical solution, experimental data, and available numerical result comparisons are shown to demonstrate the accuracy, robustness, stability, simplicity, and applicability of the proposed model.

  19. The effect of sound speed profile on shallow water shipping sound maps.

    PubMed

    Sertlek, Hüseyin Özkan; Binnerts, Bas; Ainslie, Michael A

    2016-07-01

    Sound mapping over large areas can be computationally expensive because of the large number of sources and large source-receiver separations involved. In order to facilitate computation, a simplifying assumption sometimes made is to neglect the sound speed gradient in shallow water. The accuracy of this assumption is investigated for ship generated sound in the Dutch North Sea, for realistic ship and wind distributions. Sound maps are generated for zero, negative and positive gradients for selected frequency bands (56 Hz to 3.6 kHz). The effect of sound speed profile for the decidecade centred at 125 Hz is less than 1.7 dB. PMID:27475218

  20. The Response to MJO-like Forcing in a Nonlinear Shallow-Water Model

    NASA Astrophysics Data System (ADS)

    Bao, M.; Hartmann, D. L.

    2014-12-01

    This study examines the response to Madden-Julian Oscillation (MJO)-like heat forcing in a nonlinear shallow-water model, including monopolar heating source traveling eastward with an around the world period of 48 days and dipolar heating with zonal wave period of 48 days, with zonal wave number 2 confined in longitude to the MJO active regions. A jet localized in the Pacific is compared to a zonally uniform boreal basic flow. The results show that the Rossby wave response downstream exhibits intensified quasi-stationary anomalies in the Pacific jet exit region when the MJO-like heat forcing passes the Maritime Continent, in accord with the observational analysis by Adames and Wallace (2014). The dynamical mechanism suggested in this study can be used to interpret the intraseasonal MJO-Pacific North American pattern coherence and other extratropical intraseasonal events.

  1. The response to MJO-like forcing in a nonlinear shallow-water model

    NASA Astrophysics Data System (ADS)

    Bao, Ming; Hartmann, Dennis L.

    2014-02-01

    This study examines the response to Madden-Julian Oscillation (MJO)-like heat forcing in a nonlinear shallow-water model, including monopolar heating source traveling eastward with an around the world period of 48 days and dipolar heating with zonal wave period of 48 days, with zonal wave number 2 confined in longitude to the MJO active regions. A jet localized in the Pacific is compared to a zonally uniform boreal basic flow. The results show that the Rossby wave response downstream exhibits intensified quasi-stationary anomalies in the Pacific jet exit region when the MJO-like heat forcing passes the Maritime Continent, in accord with the observational analysis by Adames and Wallace (2014). The dynamical mechanism suggested in this study can be used to interpret the intraseasonal MJO-Pacific North American pattern coherence and other extratropical intraseasonal events.

  2. Surface-to-volume wave conversion in shallow water with a corrugated bottom

    NASA Astrophysics Data System (ADS)

    Godin, O. A.

    2008-05-01

    Acoustic transmission between points onshore or in very shallow water and points in deep water is strongly influenced by the shear rigidity of marine sediments, which control the parameters and the very existence of seismoacoustic surface waves. Previously, it was found that coupling between acoustic modes and the seismoacoustic surface waves is normally weak, although not negligible in the case of a gently sloping seafloor and soft sediments. In this paper, the previous work is extended by accounting for the small-scale roughness of the seafloor. The significant role of roughness in coupling between volume and surface waves is demonstrated. The combined effect of bottom topography, roughness, and wave attenuation in soft marine sediments on the sound propagation between points in shallow and deep water is discussed.

  3. Long-range reverberation in a randomly inhomogeneous shallow water with the use of focused radiation

    NASA Astrophysics Data System (ADS)

    Pereselkov, S. A.; Petnikov, V. G.

    2007-05-01

    The low-frequency bottom reverberation in a randomly inhomogeneous shallow water is investigated within the framework of a numerical experiment using vertical transmitting arrays focusing the acoustic field at various distances from the sea bottom. It is assumed that the main source of sound velocity fluctuations in the medium is represented by background internal waves. To focus the field, a phase conjugation of acoustic waves from a probe source positioned at the focusing point is used. It is demonstrated that the reverberation level is mainly determined by the presence of internal waves and may vary by 5 20 dB as the distance from the focusing point to the sea bottom increases up to H/2, where H is the channel depth.

  4. Accelerating Time Integration for the Shallow Water Equations on the Sphere Using GPUs

    DOE PAGES

    Archibald, R.; Evans, K. J.; Salinger, A.

    2015-06-01

    The push towards larger and larger computational platforms has made it possible for climate simulations to resolve climate dynamics across multiple spatial and temporal scales. This direction in climate simulation has created a strong need to develop scalable time-stepping methods capable of accelerating throughput on high performance computing. This work details the recent advances in the implementation of implicit time stepping on a spectral element cube-sphere grid using graphical processing units (GPU) based machines. We demonstrate how solvers in the Trilinos project are interfaced with ACME and GPU kernels can significantly increase computational speed of the residual calculations in themore » implicit time stepping method for the shallow water equations on the sphere. We show the optimization gains and data structure reorganization that facilitates the performance improvements.« less

  5. Accelerating Time Integration for the Shallow Water Equations on the Sphere Using GPUs

    SciTech Connect

    Archibald, R.; Evans, K. J.; Salinger, A.

    2015-06-01

    The push towards larger and larger computational platforms has made it possible for climate simulations to resolve climate dynamics across multiple spatial and temporal scales. This direction in climate simulation has created a strong need to develop scalable time-stepping methods capable of accelerating throughput on high performance computing. This work details the recent advances in the implementation of implicit time stepping on a spectral element cube-sphere grid using graphical processing units (GPU) based machines. We demonstrate how solvers in the Trilinos project are interfaced with ACME and GPU kernels can significantly increase computational speed of the residual calculations in the implicit time stepping method for the shallow water equations on the sphere. We show the optimization gains and data structure reorganization that facilitates the performance improvements.

  6. Discontinuous Galerkin Method with Numerical Roe Flux for Spherical Shallow Water Equations

    NASA Astrophysics Data System (ADS)

    Yi, T.; Choi, S.; Kang, S.

    2013-12-01

    In developing the dynamic core of a numerical weather prediction model with discontinuous Galerkin method, a numerical flux at the boundaries of grid elements plays a vital role since it preserves the local conservation properties and has a significant impact on the accuracy and stability of numerical solutions. Due to these reasons, we developed the numerical Roe flux based on an approximate Riemann problem for spherical shallow water equations in Cartesian coordinates [1] to find out its stability and accuracy. In order to compare the performance with its counterpart flux, we used the Lax-Friedrichs flux, which has been used in many dynamic cores such as NUMA [1], CAM-DG [2] and MCore [3] because of its simplicity. The Lax-Friedrichs flux is implemented by a flux difference between left and right states plus the maximum characteristic wave speed across the boundaries of elements. It has been shown that the Lax-Friedrichs flux with the finite volume method is more dissipative and unstable than other numerical fluxes such as HLLC, AUSM+ and Roe. The Roe flux implemented in this study is based on the decomposition of flux difference over the element boundaries where the nonlinear equations are linearized. It is rarely used in dynamic cores due to its complexity and thus computational expensiveness. To compare the stability and accuracy of the Roe flux with the Lax-Friedrichs, two- and three-dimensional test cases are performed on a plane and cubed-sphere, respectively, with various numbers of element and polynomial order. For the two-dimensional case, the Gaussian bell is simulated on the plane with two different numbers of elements at the fixed polynomial orders. In three-dimensional cases on the cubed-sphere, we performed the test cases of a zonal flow over an isolated mountain and a Rossby-Haurwitz wave, of which initial conditions are the same as those of Williamson [4]. This study presented that the Roe flux with the discontinuous Galerkin method is less

  7. On the derivation of variational integrators for the rotating shallow-water equations

    NASA Astrophysics Data System (ADS)

    Bauer, Werner; Gay-Balmaz, François

    2016-04-01

    We present a structure-preserving discretization of the rotating shallow-water equations. This novel numerical scheme is based on a finite dimensional approximation of the group of diffeomorphisms and is derived via a discrete version of the Euler-Poincaré variational formulation of rotating compressible fluids. The resulting variational integrator, currently derived for regular triangular meshes, provides the first successful derivation and implementation of a compressible two-dimensional model by this discrete variational principle. We illustrate on various test cases that this variationally derived scheme exhibits excellent long term energy behavior, shows a second order convergence rate in space, and respects conservation laws such as geostrophic balance and mass conservation.

  8. Numerical study of the Guderley and Vasilev reflections in steady two-dimensional shallow water flow

    NASA Astrophysics Data System (ADS)

    Defina, Andrea; Susin, Francesca Maria; Viero, Daniele Pietro

    2008-09-01

    We present high-resolution numerical solutions of the depth-averaged two-dimensional inviscid shallow water equations which provide new information on shock reflection configuration within the von Neumann paradox conditions. The computed flow field and shock wave patterns close to the triple point for the Guderley and the Vasilev reflections confirm the four-wave theory. We suggest that the most likely Guderley reflection model is a four-wave pattern with a compression wave that originates along the downstream boundary of the supercritical patch. The compression wave, after being refracted by the slip stream, turns the flow behind the Guderley stem further toward the wall until critical condition is achieved.

  9. The composite finite volume method on unstructured meshes for the two-dimensional shallow water equations

    NASA Astrophysics Data System (ADS)

    Jiwen, Wang; Ruxun, Liu

    2001-12-01

    A composite finite volume method (FVM) is developed on unstructured triangular meshes and tested for the two-dimensional free-surface flow equations. The methodology is based on the theory of the remainder effect of finite difference schemes and the property that the numerical dissipation and dispersion of the schemes are compensated by each other in a composite scheme. The composite FVM is formed by global composition of several Lax-Wendroff-type steps followed by a diffusive Lax-Friedrich-type step, which filters out the oscillations around shocks typical for the Lax-Wendroff scheme. To test the efficiency and reliability of the present method, five typical problems of discontinuous solutions of two-dimensional shallow water are solved. The numerical results show that the proposed method, which needs no use of a limiter function, is easy to implement, is accurate, robust and is highly stable. Copyright

  10. A Kalman filter for a two-dimensional shallow-water model

    NASA Technical Reports Server (NTRS)

    Parrish, D. F.; Cohn, S. E.

    1985-01-01

    A two-dimensional Kalman filter is described for data assimilation for making weather forecasts. The filter is regarded as superior to the optimal interpolation method because the filter determines the forecast error covariance matrix exactly instead of using an approximation. A generalized time step is defined which includes expressions for one time step of the forecast model, the error covariance matrix, the gain matrix, and the evolution of the covariance matrix. Subsequent time steps are achieved by quantifying the forecast variables or employing a linear extrapolation from a current variable set, assuming the forecast dynamics are linear. Calculations for the evolution of the error covariance matrix are banded, i.e., are performed only with the elements significantly different from zero. Experimental results are provided from an application of the filter to a shallow-water simulation covering a 6000 x 6000 km grid.

  11. A potential enstrophy and energy conserving scheme for the shallow water equations

    NASA Technical Reports Server (NTRS)

    Arakawa, A.; Lamb, V. R.

    1981-01-01

    To improve the simulation of nonlinear aspects of the flow over steep topography, a potential enstrophy and energy conserving scheme for the shallow water equations is derived. It is pointed out that a family of schemes can conserve total energy for general flow and potential enstrophy for flow with no mass flux divergence. The newly derived scheme is a unique member of this family, that conserves both potential enstrophy and energy for general flow. Comparison by means of numerical experiment with a scheme that conserves (potential) enstrophy for purely horizontal nondivergent flow demonstrated the considerable superiority of the newly derived potential enstrophy and energy conserving scheme, not only in suppressing a spurious energy cascade but also in determining the overall flow regime. The potential enstrophy and energy conserving scheme for a spherical grid is also presented.

  12. Solution of the stochastic generalized shallow-water wave equation using RVT technique

    NASA Astrophysics Data System (ADS)

    Hussein, Abdallah; Selim, Mustafa M.

    2015-12-01

    In this paper, some exact solutions of the stochastic generalized nonlinear shallow-water wave (SGNSWW) equation are obtained. This equation is an important equation in fluid mechanics field. Opposite to what is usually assumed in the literature, the coefficients of the nonlinear terms in this stochastic nonlinear partial differential equation (SNLPDE) are considered to be random quantities. The random variable transformation (RVT) technique is combined with the modified extended-tanh function method (METFM) to get the stochastic solutions represented by the probability density functions (PDFs) of the solution processes in terms of the PDFs of the random coefficients. These solutions are illustrated graphically along the spacial and time dimensions at a certain wave speed.

  13. Parameterization and simulation of near bed orbital velocities under irregular waves in shallow water

    USGS Publications Warehouse

    Elfrink, B.; Hanes, D.M.; Ruessink, B.G.

    2006-01-01

    A set of empirical formulations is derived that describe important wave properties in shallow water as functions of commonly used parameters such as wave height, wave period, local water depth and local bed slope. These wave properties include time varying near-bed orbital velocities and statistical properties such as the distribution of wave height and wave period. Empirical expressions of characteristic wave parameters are derived on the basis of extensive analysis of field data using recently developed evolutionary algorithms. The field data covered a wide range of wave conditions, though there were few conditions with wave periods greater than 15 s. Comparison with field measurements showed good agreement both on a time scale of a single wave period as well as time averaged velocity moments.

  14. Shallow-water acoustic tomography from angle measurements instead of travel-time measurements.

    PubMed

    Aulanier, Florian; Nicolas, Barbara; Mars, Jérôme I; Roux, Philippe; Brossier, Romain

    2013-10-01

    For shallow-water waveguides and mid-frequency broadband acoustic signals, ocean acoustic tomography (OAT) is based on the multi-path aspect of wave propagation. Using arrays in emission and reception and advanced array processing, every acoustic arrival can be isolated and matched to an eigenray that is defined not only by its travel time but also by its launch and reception angles. Classically, OAT uses travel-time variations to retrieve sound-speed perturbations; this assumes very accurate source-to-receiver clock synchronization. This letter uses numerical simulations to demonstrate that launch-and-reception-angle tomography gives similar results to travel-time tomography without the same requirement for high-precision synchronization.

  15. On the assimilation of SWOT type data into 2D shallow-water models

    NASA Astrophysics Data System (ADS)

    Frédéric, Couderc; Denis, Dartus; Pierre-André, Garambois; Ronan, Madec; Jérôme, Monnier; Jean-Paul, Villa

    2013-04-01

    In river hydraulics, assimilation of water level measurements at gauging stations is well controlled, while assimilation of images is still delicate. In the present talk, we address the richness of satellite mapped information to constrain a 2D shallow-water model, but also related difficulties. 2D shallow models may be necessary for small scale modelling in particular for low-water and flood plain flows. Since in both cases, the dynamics of the wet-dry front is essential, one has to elaborate robust and accurate solvers. In this contribution we introduce robust second order, stable finite volume scheme [CoMaMoViDaLa]. Comparisons of real like tests cases with more classical solvers highlight the importance of an accurate flood plain modelling. A preliminary inverse study is presented in a flood plain flow case, [LaMo] [HoLaMoPu]. As a first step, a 0th order data processing model improves observation operator and produces more reliable water level derived from rough measurements [PuRa]. Then, both model and flow behaviours can be better understood thanks to variational sensitivities based on a gradient computation and adjoint equations. It can reveal several difficulties that a model designer has to tackle. Next, a 4D-Var data assimilation algorithm used with spatialized data leads to improved model calibration and potentially leads to identify river discharges. All the algorithms are implemented into DassFlow software (Fortran, MPI, adjoint) [Da]. All these results and experiments (accurate wet-dry front dynamics, sensitivities analysis, identification of discharges and calibration of model) are currently performed in view to use data from the future SWOT mission. [CoMaMoViDaLa] F. Couderc, R. Madec, J. Monnier, J.-P. Vila, D. Dartus, K. Larnier. "Sensitivity analysis and variational data assimilation for geophysical shallow water flows". Submitted. [Da] DassFlow - Data Assimilation for Free Surface Flows. Computational software http

  16. Observation of dispersive shock waves developing from initial depressions in shallow water

    NASA Astrophysics Data System (ADS)

    Trillo, S.; Klein, M.; Clauss, G. F.; Onorato, M.

    2016-10-01

    We investigate surface gravity waves in a shallow water tank, in the limit of long wavelengths. We report the observation of non-stationary dispersive shock waves rapidly expanding over a 90 m flume. They are excited by means of a wave maker that allows us to launch a controlled smooth (single well) depression with respect to the unperturbed surface of the still water, a case that contains no solitons. The dynamics of the shock waves are observed at different levels of nonlinearity equivalent to a different relative smallness of the dispersive effect. The observed undulatory behavior is found to be in good agreement with the dynamics described in terms of a Korteweg-de Vries equation with evolution in space, though in the most nonlinear cases the description turns out to be improved over the quasi linear trailing edge of the shock by modeling the evolution in terms of the integro-differential (nonlocal) Whitham equation.

  17. A theoretical model of linearly filtered reverberation for pulsed active sonar in shallow water.

    PubMed

    Murray, John J

    2014-11-01

    This paper presents a statistical model useful for characterizing pulsed active sonar reverberation in shallow water. The model is based on the fundamental assumption that reverberation consists of echoes from point scatterers having random positions, strengths, and Doppler dilations. Receive array beam patterns, simple propagation losses, and planar bistatic geometry are included. The probability distribution of uniformly dense scatterers as a function of echo delay and bearing is explicitly related to the change in the area from which scatterer echoes contribute to the reverberation, and is presented in closed form. The cross Q-function of the transmitted waveform and the linear filter applied to the received signal arises naturally from the development. This function, along with environmental spreading, determines the shape of the reverberation along the Doppler axis. The assumptions and simplifications under which the reverberation decouples into independent spatial (delay and bearing) and Doppler terms are presented.

  18. Semi-Lagrangian integration of a grid-point shallow water model on the sphere

    NASA Technical Reports Server (NTRS)

    Mcdonald, A.; Bates, J. R.

    1988-01-01

    This paper describes a semi-Lagrangian technique for integrating the equations of motion on the global domain. The technique uses an auxiliary spherical coordinate system at each near-polar gridpoint of the latitude-longitude grid; the auxiliary system is obtained by a rotation such that the new equator passes through the gridpoint in question and the new coordinate directions coincide with those of the original system at that point. The technique was applied to the shallow water equations, incorporating a semiimplicit treatment of the adjustment terms on a C-grid, with two-time levels. A five day integration was successfully carried out for a situation involving strong cross-polar flow. No filtering or diffusion was required to maintain stability over a five day period.

  19. An unstructured grid, three-dimensional model based on the shallow water equations

    USGS Publications Warehouse

    Casulli, V.; Walters, R.A.

    2000-01-01

    A semi-implicit finite difference model based on the three-dimensional shallow water equations is modified to use unstructured grids. There are obvious advantages in using unstructured grids in problems with a complicated geometry. In this development, the concept of unstructured orthogonal grids is introduced and applied to this model. The governing differential equations are discretized by means of a semi-implicit algorithm that is robust, stable and very efficient. The resulting model is relatively simple, conserves mass, can fit complicated boundaries and yet is sufficiently flexible to permit local mesh refinements in areas of interest. Moreover, the simulation of the flooding and drying is included in a natural and straightforward manner. These features are illustrated by a test case for studies of convergence rates and by examples of flooding on a river plain and flow in a shallow estuary. Copyright ?? 2000 John Wiley & Sons, Ltd.

  20. On shallow water waves in a medium with time-dependent dispersion and nonlinearity coefficients

    PubMed Central

    Abdel-Gawad, Hamdy I.; Osman, Mohamed

    2014-01-01

    In this paper, we studied the progression of shallow water waves relevant to the variable coefficient Korteweg–de Vries (vcKdV) equation. We investigated two kinds of cases: when the dispersion and nonlinearity coefficients are proportional, and when they are not linearly dependent. In the first case, it was shown that the progressive waves have some geometric structures as in the case of KdV equation with constant coefficients but the waves travel with time dependent speed. In the second case, the wave structure is maintained when the nonlinearity balances the dispersion. Otherwise, water waves collapse. The objectives of the study are to find a wide class of exact solutions by using the extended unified method and to present a new algorithm for treating the coupled nonlinear PDE’s. PMID:26199750

  1. Thermal regime of shallow water bodies in the coastal tundra zone of the Hudson Bay Lowlands

    NASA Astrophysics Data System (ADS)

    Duguay, C. R.; Soliman, A. S.; Macrae, M. L.

    2011-12-01

    Many shallow lakes and ponds of the Arctic/sub-Arctic contain thick, organic-rich sediments, which have the potential to release significant amounts of CO2 or CH4 to the atmosphere if sediment decomposition rates increase in response to warmer temperatures caused by global warming. This may be exacerbated by a deepening of the seasonal sediment thaw depth in small water bodies that are underlain by permafrost. An important step in linking climatic conditions to rates of organic matter decomposition and gas production from shallow water bodies is an improved understanding of the thermal properties of lake sediments and how sediment temperatures fluctuate in response to changing air temperatures. This knowledge is also important if the ratio of terrestrial to aquatic landscape units in cold regions changes under a warmer climate. One approach that has been used in terrestrial permafrost environments is the examination of how mean annual permafrost surface temperature deviates from mean annual 2-m screen height air temperature (MAAT). The offset between MAAT and the mean annual sediment surface temperature (MASST) has been found to be much larger in deep aquatic systems (greater than 10 m) than in terrestrial permafrost systems due to the presence of the water column that can efficiently transfer heat through mixing. However, the efficiency of heat transfer in shallow water bodies is expected to larger in summer (thawed) than in winter (frozen) conditions, when thermal energy must move by conduction alone. The present study examined the efficiency of sediment heat transfer in shallow water bodies (less than 3 m) during summer and winter periods. Air, sediment and water temperatures of three shallow water bodies in the coastal tundra zone of the Hudson Bay Lowlands near Churchill, Manitoba, Canada were monitored (December 2009-August 2011). Arrays of thermistors and heat pulse probes were placed at 10 cm increments between 20 cm above the water/sediment interface and

  2. On shallow water waves in a medium with time-dependent dispersion and nonlinearity coefficients.

    PubMed

    Abdel-Gawad, Hamdy I; Osman, Mohamed

    2015-07-01

    In this paper, we studied the progression of shallow water waves relevant to the variable coefficient Korteweg-de Vries (vcKdV) equation. We investigated two kinds of cases: when the dispersion and nonlinearity coefficients are proportional, and when they are not linearly dependent. In the first case, it was shown that the progressive waves have some geometric structures as in the case of KdV equation with constant coefficients but the waves travel with time dependent speed. In the second case, the wave structure is maintained when the nonlinearity balances the dispersion. Otherwise, water waves collapse. The objectives of the study are to find a wide class of exact solutions by using the extended unified method and to present a new algorithm for treating the coupled nonlinear PDE's. PMID:26199750

  3. The effect of sound speed profile on shallow water shipping sound maps.

    PubMed

    Sertlek, Hüseyin Özkan; Binnerts, Bas; Ainslie, Michael A

    2016-07-01

    Sound mapping over large areas can be computationally expensive because of the large number of sources and large source-receiver separations involved. In order to facilitate computation, a simplifying assumption sometimes made is to neglect the sound speed gradient in shallow water. The accuracy of this assumption is investigated for ship generated sound in the Dutch North Sea, for realistic ship and wind distributions. Sound maps are generated for zero, negative and positive gradients for selected frequency bands (56 Hz to 3.6 kHz). The effect of sound speed profile for the decidecade centred at 125 Hz is less than 1.7 dB.

  4. A model for sonar interrogation of complex bottom and surface targets in shallow-water waveguides.

    PubMed

    Giddings, Thomas E; Shirron, Joseph J

    2008-04-01

    Many problems of current interest in underwater acoustics involve low-frequency broadband sonar interrogation of objects near the sea surface or sea floor of a shallow-water environment. When the target is situated near the upper or lower boundary of the water column the acoustic interactions with the target objects are complicated by interactions with the nearby free surface or fluid-sediment interface, respectively. A practical numerical method to address such situations is presented. The model provides high levels of accuracy with the flexibility to handle complex, three-dimensional targets in range-independent environments. The model is demonstrated using several bottom target scenarios, with and without locally undulating seabeds. The impact of interface and boundary interactions is considered with an eye toward using the sonar return signal as the basis for acoustic imaging or spectral classification.

  5. Solving Two-Mode Shallow Water Equations Using Finite Volume Methods

    NASA Astrophysics Data System (ADS)

    Cheng, Y.

    2015-12-01

    We develop and study numerical methods for the two-mode shallow water equations recently proposed in [S. STECHMANN, A. MAJDA, and B. KHOUIDER, Theor. Comput. Fluid Dynamics, 22 (2008), pp. 407-432]. Designing a reliable numerical method for this system is a challenging task due to its conditional hyperbolicity and the presence of nonconservative terms. We present several numerical approaches — two operator splitting methods (based on either Roe-type upwind or central-upwind scheme), a central-upwind scheme and a path-conservative central-upwind scheme — and test their performance in a number of numerical experiments. The obtained results demonstrate that a careful numerical treatment of nonconservative terms is crucial for designing a robust and highly accurate numerical method. This is a joint work with M. J. Castro Díaz, A. Chertock and A. Kurganov.

  6. Functioning of a Shallow-Water Sediment System during Experimental Warming and Nutrient Enrichment

    PubMed Central

    Alsterberg, Christian; Sundbäck, Kristina; Hulth, Stefan

    2012-01-01

    Effects of warming and nutrient enrichment on intact unvegetated shallow-water sediment were investigated for 5 weeks in the autumn under simulated natural field conditions, with a main focus on trophic state and benthic nitrogen cycling. In a flow-through system, sediment was exposed to either seawater at ambient temperature or seawater heated 4°C above ambient, with either natural or nutrient enriched water. Sediment–water fluxes of oxygen and inorganic nutrients, nitrogen mineralization, and denitrification were measured. Warming resulted in an earlier shift to net heterotrophy due to increased community respiration; primary production was not affected by temperature but (slightly) by nutrient enrichment. The heterotrophic state was, however, not further strengthened by warming, but was rather weakened, probably because increased mineralization induced a shortage of labile organic matter. Climate-related warming of seawater during autumn could therefore, in contrast to previous predictions, induce shorter but more intensive heterotrophic periods in shallow-water sediments, followed by longer autotrophic periods. Increased nitrogen mineralization and subsequent effluxes of ammonium during warming suggested a preferential response of organisms driving nitrogen mineralization when compared to sinks of ammonium such as nitrification and algal assimilation. Warming and nutrient enrichment resulted in non-additive effects on nitrogen mineralization and denitrification (synergism), as well as on benthic fluxes of phosphate (antagonism). The mode of interaction appears to be related to the trophic level of the organisms that are the main drivers of the affected processes. Despite the weak response of benthic microalgae to both warming and nutrient enrichment, the assimilation of nitrogen by microalgae was similar in magnitude to rates of nitrogen mineralization. This implies a sustained filter function and retention capacity of nutrients by the sediment. PMID

  7. Fracturing and flow: Investigations on the formation of shallow water sills on Europa

    NASA Astrophysics Data System (ADS)

    Craft, Kathleen L.; Patterson, G. Wes; Lowell, Robert P.; Germanovich, Leonid

    2016-08-01

    Double ridge tectonic features appear prominently and ubiquitously across the surface of Jupiter's icy moon Europa. Previous studies have interpreted flanking fractures observed along some of the ridges as indicators of stress resulting from the ridge loading and flexing of the ice shell above a shallow water body. Here, we investigate a shallow water sill emplacement process at a time when the shell is cooling and thickening and explore the conditions that would make such a system feasible on timescales of ridge formation. Results show that fracture initiation and transport of ocean water to shallow depths can realistically occur, although horizontal fracturing and sill lifetimes prove challenging. Finite element models demonstrate that mechanical layering or a fractured shell do not provide enough stress change to promote horizontal fracturing, but tidal forcing does result in a small amount of turn. Assuming it is possible for a shallow sill to form, a sill would convect internally and conduct heat out quickly, resulting in a short lifetime in comparison to an estimated flexure timeframe of 100 kyr suggested required for double ridge formation. Consideration of heat transfer and residence in the overlying ice, however, extends the flexure timeframe and multiple sill intrusions or replenishment with warm ocean water could prolong the effective sill lifetime. Though challenges still remain for sill formation at Europa, these analyses constrain the potential mechanisms for emplacement and indicate sills can act as viable options for supplying the heat needed for surface flexure. Further analyses and future missions to Europa will help to increase our understanding of these enigmatic processes.

  8. The effects of random bottom bathymetry on coherence in shallow water acoustic propagation

    NASA Astrophysics Data System (ADS)

    Wylie, Jennifer Leigh

    In an ideal shallow water propagation channel the sound field is accurately described by normal modes and the mode structure is predictable with clean separated modes. However the real ocean environment is rarely ideal, and variations in bottom bathymetry and water column sound speed are usually present. Random fluctuations of the sound speed in time, space, and/or the boundaries can distort modes such that phase coherence is reduced and under some conditions completely lost. The basic research community seeks to understand the effects of internal waves on temporal coherence. Here the study method of choice is to use fixed system experiments that observe both oceanographic and acoustical fluctuations. On the other hand applied Naval research is focused on using mobile platforms to instantaneously measure spatial coherence shipboard, and they have little to no interest in measuring long term coherence. Here we seek to present a unified theory using normal modes. Both spatial and temporal coherence as well as the effects of source motion and Doppler will be addressed. Mode structure can be randomized in two ways: sound speed fluctuations and boundary variations. The research proposed here will emphasize spatial variations of the bottom bathymetry and how they affect mode arrivals. A parabolic equation model is used to predict mode shapes in a range dependent environment and random variations in bottom boundaries will be introduced and distortion in the mode arrival structure will be observed. The mode arrival structures will then be used to estimate temporal and spatial coherence of the mode arrivals and the predictions will be compared to the data from three different shallow water experiments.

  9. Acoustic projectors for AUV and UUV applications in shallow-water regions

    NASA Astrophysics Data System (ADS)

    Howarth, Thomas R.

    1999-07-01

    For acoustic identification of objects in a littoral environment, there are generally three frequency bands of interest; 1 kHz to 10 kHz, 10 kHz to 100 kHz and 100 kHz to >= 1 MHz, where the selection of these bands is dependent upon the specific Navy mission. This paper will discuss the progress of the Naval Research Laboratory in developing acoustic projector prototypes to address the lower two frequency bands for unmanned underwater vehicle (UUV) and/or autonomous underwater vehicle (AUV) applications. The band of 1 kHz to 10 kHz is currently being addressed sing cymbal flextensional vibrator elements sandwiched in to thin panels. In-air data has shown that high levels of acoustic displacement at low frequencies are possible with these devices while more recent in-water data has verified these expectations. This success has led to modeling and prototyping of similar devices for shallow water regions. The frequency range of 10 kHz to 100 kHz has been investigated for several years where the acoustic projector was originally reported during AeroSense 1998. The result of integrating the NRL broadband projector into the NSWC/Coastal Systems Station synthetic aperture sonar UUV will be presented. This system integration considers the projector as a constant source level over the 10 kHz to 100 kHz band by driving the 100 kHz resonant transducer with an inversely shaped transformed. The presentation will conclude with a discussion of the future development trends in shallow water transducers for AUV and UUV missions.

  10. Implementation studies of a biologically based controller for a shallow water walking machine

    NASA Astrophysics Data System (ADS)

    Crisman, Jill D.; Ayers, Joseph

    1993-05-01

    Crusteans have been engineered by evolution to adapt and survive in a shallow water hydro- dynamic environment. We have formed a partnership between biology and engineering to explore how crusteans navigate in shallow waters and we are continuing studies to reverse- engineer the biological system. In particular, we are studying the neural control mechanisms of the American lobster, and applying the resultant neurophysiological models to robot control. Our robot is based on a central pattern generation model rather than a reflex chain model of the underlying mechanisms. We have formalized the basic structure of this model in terms of central pattern generators, command, and coordinating systems. The central pattern generator controls the motion of the leg appropriate to walking in all directions with and without sensory feedback. The coordinating system controls the gait pattern of the legs. Proprioceptive reflexes are used to alter the path of a leg due to obstacles and exteroceptive reflexes alter the patterns of several legs to achieve overall motions of the lobster. We have built a simulator which models the central pattern generator and coordination and load compensation. It demonstrates basic walking motions in any direction and at multiple speeds. If additional loads are applied while walking, the neural activity is increased (recruitment) and the leg pattern slows to reflect the additional load. We are currently building an eight legged terrestrial walking machine based on the morphology of the lobster to demonstrate the results of our simulation. In the future we will add more sensors, reflexes, and taxis to our simulator and robot. We plan to implement an underwater version of this robot.

  11. Functioning of a shallow-water sediment system during experimental warming and nutrient enrichment.

    PubMed

    Alsterberg, Christian; Sundbäck, Kristina; Hulth, Stefan

    2012-01-01

    Effects of warming and nutrient enrichment on intact unvegetated shallow-water sediment were investigated for 5 weeks in the autumn under simulated natural field conditions, with a main focus on trophic state and benthic nitrogen cycling. In a flow-through system, sediment was exposed to either seawater at ambient temperature or seawater heated 4°C above ambient, with either natural or nutrient enriched water. Sediment-water fluxes of oxygen and inorganic nutrients, nitrogen mineralization, and denitrification were measured. Warming resulted in an earlier shift to net heterotrophy due to increased community respiration; primary production was not affected by temperature but (slightly) by nutrient enrichment. The heterotrophic state was, however, not further strengthened by warming, but was rather weakened, probably because increased mineralization induced a shortage of labile organic matter. Climate-related warming of seawater during autumn could therefore, in contrast to previous predictions, induce shorter but more intensive heterotrophic periods in shallow-water sediments, followed by longer autotrophic periods. Increased nitrogen mineralization and subsequent effluxes of ammonium during warming suggested a preferential response of organisms driving nitrogen mineralization when compared to sinks of ammonium such as nitrification and algal assimilation. Warming and nutrient enrichment resulted in non-additive effects on nitrogen mineralization and denitrification (synergism), as well as on benthic fluxes of phosphate (antagonism). The mode of interaction appears to be related to the trophic level of the organisms that are the main drivers of the affected processes. Despite the weak response of benthic microalgae to both warming and nutrient enrichment, the assimilation of nitrogen by microalgae was similar in magnitude to rates of nitrogen mineralization. This implies a sustained filter function and retention capacity of nutrients by the sediment.

  12. POD/DEIM nonlinear model order reduction of an ADI implicit shallow water equations model

    NASA Astrophysics Data System (ADS)

    Ştefănescu, R.; Navon, I. M.

    2013-03-01

    In the present paper we consider a 2-D shallow-water equations (SWE) model on a β-plane solved using an alternating direction fully implicit (ADI) finite-difference scheme on a rectangular domain. The scheme was shown to be unconditionally stable for the linearized equations. The discretization yields a number of nonlinear systems of algebraic equations. We then use a proper orthogonal decomposition (POD) to reduce the dimension of the SWE model. Due to the model nonlinearities, the computational complexity of the reduced model still depends on the number of variables of the full shallow - water equations model. By employing the discrete empirical interpolation method (DEIM) we reduce the computational complexity of the reduced order model due to its depending on the nonlinear full dimension model and regain the full model reduction expected from the POD model. To emphasize the CPU gain in performance due to use of POD/DEIM, we also propose testing an explicit Euler finite difference scheme (EE) as an alternative to the ADI implicit scheme for solving the swallow water equations model. We then proceed to assess the efficiency of POD/DEIM as a function of number of spatial discretization points, time steps, and POD basis functions. As was expected, our numerical experiments showed that the CPU time performances of POD/DEIM schemes are proportional to the number of mesh points. Once the number of spatial discretization points exceeded 10000 and for 90 DEIM interpolation points, the CPU time decreased by a factor of 10 in case of POD/DEIM implicit SWE scheme and by a factor of 15 for the POD/DEIM explicit SWE scheme in comparison with the corresponding POD SWE schemes. Moreover, our numerical tests revealed that if the number of points selected by DEIM algorithm reached 50, the approximation errors due to POD/DEIM and POD reduced systems have the same orders of magnitude, thus supporting the theoretical results existing in the literature.

  13. Airborne Laser Bathymetry for Documentation of Submerged Archaeological Sites in Shallow Water

    NASA Astrophysics Data System (ADS)

    Doneus, M.; Miholjek, I.; Mandlburger, G.; Doneus, N.; Verhoeven, G.; Briese, Ch.; Pregesbauer, M.

    2015-04-01

    Knowledge of underwater topography is essential to the understanding of the organisation and distribution of archaeological sites along and in water bodies. Special attention has to be paid to intertidal and inshore zones where, due to sea-level rise, coastlines have changed and many former coastal sites are now submerged in shallow water. Mapping the detailed inshore topography is therefore important to reconstruct former coastlines, identify sunken archaeological structures and locate potential former harbour sites. However, until recently archaeology has lacked suitable methods to provide the required topographical data of shallow underwater bodies. Our research shows that airborne topo-bathymetric laser scanner systems are able to measure surfaces above and below the water table over large areas in high detail using very short and narrow green laser pulses, even revealing sunken archaeological structures in shallow water. Using an airborne laser scanner operating at a wavelength in the green visible spectrum (532 nm) two case study areas in different environmental settings (Kolone, Croatia, with clear sea water; Lake Keutschach, Austria, with turbid water) were scanned. In both cases, a digital model of the underwater topography with a planimetric resolution of a few decimeters was measured. While in the clear waters of Kolone penetration depth was up to 11 meters, turbid Lake Keutschach allowed only to document the upper 1.6 meters of its underwater topography. Our results demonstrate the potential of this technique to map submerged archaeological structures over large areas in high detail providing the possibility for systematic, large scale archaeological investigation of this environment.

  14. Solution of linearized rotating shallow water equations by compact schemes with different grid-staggering strategies

    NASA Astrophysics Data System (ADS)

    Rajpoot, Manoj K.; Bhaumik, Swagata; Sengupta, Tapan K.

    2012-03-01

    High accuracy solution of PDEs requires proper error analysis. Previous analysis for a non-dispersive system [T.K. Sengupta, A. Dipankar, P. Sagaut, Error dynamics: beyond von Neumann analysis, J. Comput. Phys. 226 (2007) 1211-1218] identified sources of error correctly. Here, the aim is to extend the spectral analysis for the model linearized rotating shallow water equations (LRSWE), as an example of dispersive system. We perform the analysis when high accuracy compact schemes are used to solve the LRSWE relevant to geophysical fluid dynamics, using different grid arrangements proposed in Mesinger and Arakawa [F. Mesinger, A. Arakawa, Numerical Methods Used in Atmospheric Models, GARP Publ. Ser. No. 17, vol. 1, WMO, Geneva, 1976, pp. 43-64] and Randall [D.A. Randall, Geostrophic adjustment and the finite-difference shallow-water equations, Mon. Wea. Rev. 122 (1994) 1371-1377]. Compact schemes are used for fluid dynamical problem, as these afford near-spectral accuracy in solving non-periodic problems. However, higher accuracy methods also suffer from errors, those are often filtered by low order methods. For example, dispersion error is present in all numerical methods and extreme form of it leads to q-waves, which appear at higher wavenumbers for compact schemes as compared to lower order method. We also evaluate a compact scheme specifically designed for use with staggered grids. Here, two and four time-level temporal discretization methods have been compared for solving LRSWE by considering classical fourth-order, four-stage Runge-Kutta ( RK4), two time-level forward-backward (FB) and four time-level generalized FB temporal integration schemes.

  15. Nonhydrostatic correction for shallow water equations with quadratic vertical pressure distribution: A Boussinesq-type equation

    NASA Astrophysics Data System (ADS)

    Jeschke, Anja; Behrens, Jörn

    2015-04-01

    In tsunami modeling, two different systems of dispersive long wave equations are common: The nonhydrostatic pressure correction for the shallow water equations derived out of the depth-integrated 3D Reynolds-averaged Navier-Stokes equations, and the category of Boussinesq-type equations obtained by an expansion in the nondimensional parameters for nonlinearity and dispersion in the Euler equations. The first system uses as an assumption a linear vertical interpolation of the nonhydrostatic pressure, whereas the second system's derivation includes an quadratic vertical interpolation for the nonhydrostatic pressure. In this case the analytical dispersion relations do not coincide. We show that the nonhydrostatic correction with a quadratic vertical interpolation yields an equation set equivalent to the Serre equations, which are 1D Boussinesq-type equations for the case of a horizontal bottom. Now, both systems yield the same analytical dispersion relation according up to the first order with the reference dispersion relation of the linear wave theory. The adjusted model is also compared to other Boussinesq-type equations. The numerical model with the nonhydrostatic correction for the shallow water equations uses Leapfrog timestepping stabilized with the Asselin filter and the P1-PNC1 finite element space discretization. The numerical dispersion relations are computed and compared by employing a testcase of a standing wave in a closed basin. All numerical values match their theoretical expectations. This work is funded by project ASTARTE - Assessment, Strategy And Risk Reduction for Tsunamis in Europe - FP7-ENV2013 6.4-3, Grant 603839. We acknowledge the support given by Geir K. Petersen from the University of Oslo.

  16. Functioning of a shallow-water sediment system during experimental warming and nutrient enrichment.

    PubMed

    Alsterberg, Christian; Sundbäck, Kristina; Hulth, Stefan

    2012-01-01

    Effects of warming and nutrient enrichment on intact unvegetated shallow-water sediment were investigated for 5 weeks in the autumn under simulated natural field conditions, with a main focus on trophic state and benthic nitrogen cycling. In a flow-through system, sediment was exposed to either seawater at ambient temperature or seawater heated 4°C above ambient, with either natural or nutrient enriched water. Sediment-water fluxes of oxygen and inorganic nutrients, nitrogen mineralization, and denitrification were measured. Warming resulted in an earlier shift to net heterotrophy due to increased community respiration; primary production was not affected by temperature but (slightly) by nutrient enrichment. The heterotrophic state was, however, not further strengthened by warming, but was rather weakened, probably because increased mineralization induced a shortage of labile organic matter. Climate-related warming of seawater during autumn could therefore, in contrast to previous predictions, induce shorter but more intensive heterotrophic periods in shallow-water sediments, followed by longer autotrophic periods. Increased nitrogen mineralization and subsequent effluxes of ammonium during warming suggested a preferential response of organisms driving nitrogen mineralization when compared to sinks of ammonium such as nitrification and algal assimilation. Warming and nutrient enrichment resulted in non-additive effects on nitrogen mineralization and denitrification (synergism), as well as on benthic fluxes of phosphate (antagonism). The mode of interaction appears to be related to the trophic level of the organisms that are the main drivers of the affected processes. Despite the weak response of benthic microalgae to both warming and nutrient enrichment, the assimilation of nitrogen by microalgae was similar in magnitude to rates of nitrogen mineralization. This implies a sustained filter function and retention capacity of nutrients by the sediment. PMID:23240032

  17. Remote sensing of water depths in shallow waters via artificial neural networks

    NASA Astrophysics Data System (ADS)

    Ceyhun, Özçelik; Yalçın, Arısoy

    2010-09-01

    Determination of the water depths in coastal zones is a common requirement for the majority of coastal engineering and coastal science applications. However, production of high quality bathymetric maps requires expensive field survey, high technology equipment and expert personnel. Remotely sensed images can be conveniently used to reduce the cost and labor needed for bathymetric measurements and to overcome the difficulties in spatial and temporal depth provision. An Artificial Neural Network (ANN) methodology is introduced in this study to derive bathymetric maps in shallow waters via remote sensing images and sample depth measurements. This methodology provides fast and practical solution for depth estimation in shallow waters, coupling temporal and spatial capabilities of remote sensing imagery with modeling flexibility of ANN. Its main advantage in practice is that it enables to directly use image reflectance values in depth estimations, without refining depth-caused scatterings from other environmental factors (e.g. bottom material and vegetation). Its function-free structure allows evaluating nonlinear relationships between multi-band images and in-situ depth measurements, therefore leads more reliable depth estimations than classical regressive approaches. The west coast of the Foca, Izmir/Turkey was used as a test bed. Aster first three band images and Quickbird pan-sharpened images were used to derive ANN based bathymetric maps of this study area. In-situ depth measurements were supplied from the General Command of Mapping, Turkey (HGK). Two models were set, one for Aster and one for Quickbird image inputs. Bathymetric maps relying solely on in-situ depth measurements were used to evaluate resultant derived bathymetric maps. The efficiency of the methodology was discussed at the end of the paper. It is concluded that the proposed methodology could decrease spatial and repetitive depth measurement requirements in bathymetric mapping especially for

  18. Shallow-water habitats as sources of fallback foods for hominins.

    PubMed

    Wrangham, Richard; Cheney, Dorothy; Seyfarth, Robert; Sarmiento, Esteban

    2009-12-01

    Underground storage organs (USOs) have been proposed as critical fallback foods for early hominins in savanna, but there has been little discussion as to which habitats would have been important sources of USOs. USOs consumed by hominins could have included both underwater and underground storage organs, i.e., from both aquatic and terrestrial habitats. Shallow aquatic habitats tend to offer high plant growth rates, high USO densities, and relatively continuous USO availability throughout the year. Baboons in the Okavango delta use aquatic USOs as a fallback food, and aquatic or semiaquatic USOs support high-density human populations in various parts of the world. As expected given fossilization requisites, the African early- to mid-Pleistocene shows an association of Homo and Paranthropus fossils with shallow-water and flooded habitats where high densities of plant-bearing USOs are likely to have occurred. Given that early hominins in the tropics lived in relatively dry habitats, while others occupied temperate latitudes, ripe, fleshy fruits of the type preferred by African apes would not normally have been available year round. We therefore suggest that water-associated USOs were likely to have been key fallback foods, and that dry-season access to aquatic habitats would have been an important predictor of hominin home range quality. This study differs from traditional savanna chimpanzee models of hominin origins by proposing that access to aquatic habitats was a necessary condition for adaptation to savanna habitats. It also raises the possibility that harvesting efficiency in shallow water promoted adaptations for habitual bipedality in early hominins. PMID:19890871

  19. Impacts of Columbia River discharge on salmonid habitat: 2. Changes in shallow-water habitat

    NASA Astrophysics Data System (ADS)

    Kukulka, Tobias; Jay, David A.

    2003-09-01

    This is the second part of an investigation that analyzes human alteration of shallow-water habitat (SWH) available to juvenile salmonids in the tidal Lower Columbia River. Part 2 develops a one-dimensional, subtidal river stage model that explains ˜90% of the stage variance in the tidal river. This model and the tidal model developed in part 1 [, 2003] uncouple the nonlinear interaction of river tides and river stage by referring both to external forcing by river discharge, ocean tides, and atmospheric pressure. Applying the two models, daily high-water levels were predicted for a reach from rkm-50 to rkm-90 during 1974 to 1998, the period of contemporary management. Predicted water levels were related to the bathymetry and topography to determine the changes in shallow-water habitat area (SWHA) caused by flood control dikes and altered flow management. Model results suggest that diking and a >40% reduction of peak flows have reduced SWHA by ˜62% during the crucial spring freshet period during which juvenile salmon use of SWHA is maximal. Taken individually, diking and flow cycle alteration reduced spring freshet SWHA by 52% and 29%, respectively. SWHA has been both displaced to lower elevations and modified in its character because tidal range has increased. Our models of these processes are economical for the very long simulations (seasons to centuries) needed to understand historic changes and climate impacts on SWH. Through analysis of the nonlinear processes controlling surface elevation in a tidal river, we have identified some of the mechanisms that link freshwater discharge to SWH and salmonid survival.

  20. A 3-D implicit finite-volume model of shallow water flows

    NASA Astrophysics Data System (ADS)

    Wu, Weiming; Lin, Qianru

    2015-09-01

    A three-dimensional (3-D) model has been developed to simulate shallow water flows in large water bodies, such as coastal and estuarine waters. The eddy viscosity is determined using a newly modified mixing length model that uses different mixing length functions for the horizontal and vertical shear strain rates. The 3-D shallow water flow equations with the hydrostatic pressure assumption are solved using an implicit finite-volume method based on a quadtree (telescoping) rectangular mesh on the horizontal plane and the sigma coordinate in the vertical direction. The quadtree technique can locally refine the mesh around structures or in high-gradient regions by splitting a coarse cell into four child cells. The grid nodes are numbered with a one-dimensional index system that has unstructured grid feature for better grid flexibility. All the primary variables are arranged in a non-staggered grid system. Fluxes at cell faces are determined using a Rhie and Chow-type momentum interpolation, to avoid the possible spurious checkerboard oscillations caused by linear interpolation. Each of the discretized governing equations is solved iteratively using the flexible GMRES method with ILUT preconditioning, and coupling of water level and velocity among these equations is achieved by using the SIMPLEC algorithm with under-relaxation. The model has been tested in four cases, including steady flow near a spur-dyke, tidal flows in San Francisco Bay and Gironde Estuary, and wind-induced current in a flume. The calculated water levels and velocities are in good agreement with the measured values.

  1. Correlating Mediterranean shallow water deposits with global Oligocene–Miocene stratigraphy and oceanic events☆

    PubMed Central

    Reuter, Markus; Piller, Werner E.; Brandano, Marco; Harzhauser, Mathias

    2013-01-01

    Shallow-marine sediment records have the strong potential to display sensitive environmental changes in sedimentary geometries and skeletal content. However, the time resolution of most neritic carbonate records is not high enough to be compared with climatic events as recorded in the deep-sea sediment archives. In order to resolve the paleoceanographic and paleoclimatic changes during the Oligocene–Miocene transition in the Mediterranean shallow water carbonate systems with the best possible time resolution, we re-evaluated the Decontra section on the Maiella Platform (central Apennines, Italy), which acts as a reference for the correlation of Oligocene–Miocene shallow water deposits in the Mediterranean region. The 120-m-thick late Oligocene–late Miocene carbonate succession is composed of larger foraminiferal, bryozoan and corallinacean limestones interlayered with distinct planktonic foraminiferal carbonates representing a mostly outer neritic setting. Integrated multi-proxy and facies analyses indicate that CaCO3 and total organic carbon contents as well as gamma-ray display only local to regional processes on the carbonate platform and are not suited for stratigraphic correlation on a wider scale. In contrast, new biostratigraphic data correlate the Decontra stable carbon isotope record to the global deep-sea carbon isotope record. This links relative sea level fluctuations, which are reflected by facies and magnetic susceptibility changes, to third-order eustatic cycles. The new integrated bio-, chemo-, and sequence stratigraphic framework enables a more precise timing of environmental changes within the studied time interval and identifies Decontra as an important locality for correlating not only shallow and deep water sediments of the Mediterranean region but also on a global scale. PMID:25844021

  2. Stability Analysis of Tachocline Latitudinal Differential Rotation and Coexisting Toroidal Band Using a Shallow-Water Model

    NASA Astrophysics Data System (ADS)

    Dikpati, Mausumi; Gilman, Peter A.; Rempel, Matthias

    2003-10-01

    Recently global, quasi-two-dimensional instabilities of tachocline latitudinal differential rotation have been studied using a so-called shallow-water model. While purely hydrodynamic shallow-water type disturbances were found to destabilize only the overshoot tachocline, the MHD analysis showed that in the presence of a broad toroidal field, both the radiative and overshoot parts of the tachocline can be unstable. We explore here instability in the shallow-water solar tachocline with concentrated toroidal bands placed at a wide range of latitudes, emulating different phases of the solar cycle. In equilibrium, the poleward magnetic curvature stress of the band is balanced either by an equatorward hydrostatic pressure gradient or by the Coriolis force from a prograde jet inside the band. We find that toroidal bands placed almost at all latitudes make the system unstable to shallow-water disturbances. For bands without prograde jets, the instability persists well above 100 kG peak field, while a jet stabilizes the band at a field of ~40 kG. The jet imparts gyroscopic inertia to the toroidal band inhibiting it from unstably ``tipping'' its axis away from rotation axis. Like previously studied HD and MHD shallow-water instabilities in the tachocline, unstable shallow-water modes found here produce kinetic helicity and hence a tachocline α-effect these narrow kinetic helicity profiles should generate narrowly confined poloidal fields, which will help formation of the narrow toroidal field. Toroidal bands poleward of 15° latitude suppress midlatitude hydrodynamic α-effects. However, even strong toroidal bands equatorward of 15° allow this hydrodynamic α-effect. Such bands should occur during the late declining phase of a solar cycle and, thus, could help the onset of a new cycle by switching on the mid latitude α-effect.

  3. An adaptive multiblock high-order finite-volume method for solving the shallow-water equations on the sphere

    DOE PAGES

    McCorquodale, Peter; Ullrich, Paul; Johansen, Hans; Colella, Phillip

    2015-09-04

    We present a high-order finite-volume approach for solving the shallow-water equations on the sphere, using multiblock grids on the cubed-sphere. This approach combines a Runge--Kutta time discretization with a fourth-order accurate spatial discretization, and includes adaptive mesh refinement and refinement in time. Results of tests show fourth-order convergence for the shallow-water equations as well as for advection in a highly deformational flow. Hierarchical adaptive mesh refinement allows solution error to be achieved that is comparable to that obtained with uniform resolution of the most refined level of the hierarchy, but with many fewer operations.

  4. Species of coccidia (Apicomplexa: Eimeriidae) in shrews from Alaska, U.S.A., and northeastern Siberia, Russia, with description of two new species.

    PubMed

    Lynch, A J; Duszynski, D W

    2008-08-01

    Fecal samples (n = 636) from 10 species of shrews collected in Alaska (n = 540) and northeastern Siberia (n = 96) were examined for the presence of coccidia (Apicomplexa: Eimeriidae). Five distinct oocyst morphotypes were observed. Three types were consistent with oocysts of previously recognized coccidia species from other shrew hosts. These were Eimeria inyoni, E. vagrantis, and Isospora brevicauda, originally described from the inyo shrew (Sorex tenellus), dusky shrew (S. monticolus), and northern short-tailed shrew (Blarina brevicauda), respectively. We found 5 new host records for E. inyoni, 3 for E. vagrantis, and 3 for I. brevicauda. The 2 additional oocyst morphotypes, both from the tundra shrew (Sorex tundrensis), are putative new species. Sporulated oocysts of Eimeria beringiacea n. sp. are subspheroidal, 17.7 x 15.6 microm (14-24 x 13-20 microm) with a length (L)/width (W) ratio of 1.1 (1.0-1.4); these lack a micropyle (M), an oocyst residuum (OR), and a polar granule (PG). Sporocysts are ellipsoidal, 10.3 x 6.1 microm (7-14 x 4-8 microm), with a L/W ratio of 1.7 (1.3-2.3) and have a Stieda body (SB), Substieda body (SSB), and sporocyst residuum (SR). Oocysts of Eimeria tundraensis n. sp. are spheroidal to subspheroidal, 24.8 x 23.5 microm (23-26 x 22-25 microm), with a L/W ratio of 1.1 (1.0-1.2); these lack a M and OR, but a single PG is present. Sporocysts are elongate ellipsoidal, 15.4 x 8.3 microm (13-17 x 7-9 microm), with a L/W ratio of 1.9 (1.4-2.1) and have a SB, SSB, and SR. PMID:18576829

  5. Time of day of ovulation by three duck species in subarctic Alaska

    USGS Publications Warehouse

    Esler, Daniel

    1999-01-01

    I examined variation in ovulation times of Northern Pintails (Anas acuta), American Wigeon (A. americana), and Lesser Scaup (Aythya affinis) breeding in subarctic Alaskan wetlands. Ovulation times and, by extension, egg-laying times were highly variable in all three species, with ovulations occurring during all hours of the day. Only Lesser Scaup demonstrated a morning peak in ovulations, within a broad range of ovulation times. Lack of a distinct time of day of ovulation suggests that fitness is not related to egg-laying time for these species, particularly at subarctic latitudes with nearly perpetual daylight. Egg-laying interval may have more adaptive significance than egg-laying time for these species. Ovulation intervals were estimated to be approximately 24 hr, which is short relative to the range of intervals documented in birds, despite high energetic and nutritional costs of egg formation in these species. Evidence of approximately 24-hr ovulation intervals, particularly in the absence of a distinct time of day for egg laying, supports hypotheses that a shortened period of egg production in waterfowl may have selective advantage due to reduction in the period of nest exposure to predation, earlier hatch dates, reduced hatch asynchrony, or improved viability of early-laid eggs.

  6. Water quality and communities associated with macrophytes in a shallow water-supply reservoir on an aquaculture farm.

    PubMed

    Sipaúba-Tavares, L H; Dias, S G

    2014-05-01

    Plankton communities and macrofauna associated to aquatic macrophyte stands in a shallow water-supply reservoir (21°14'09″S; 48°18'38″W) on an aquaculture farm were compared to evaluate the relationship between organism densities and some abiotic features of the reservoir. Water and communities associated were sampled at two sites, one in an area with the predominance of Eichhornia azurea (Sw.) Kunth and the other with the predominance of Salvinia auriculata Aublet. Communities associated with macrophytes were sampled with floating quadrants (0.5 m2); the macrophytes were washed and plankton and macrofauna were fixated with 4% formalin and 1% lugol iodine; the specimens were then identified and counted. Plankton and macrofauna communities associated with S. auriculata and E. azurea had a similar diversity of species but different (p<0.05) in the abundance of associated organisms. Eichhornia azurea had the highest contents in dry and wet weight, total phosphorus, total nitrogen and organic matter. Planktonic algae were directly correlated with biomass of E. azurea. The taxa with highest densities were Rotifera and Zygnematophyceae. Results showed that the environmental variables associated with macrophytes presence in the shallow reservoir is a strong predictor of favourable conditions to maintain great diversity plankton community and macrofauna associated with plants. The role of macrophytes is important for not only stabilising the clear-water state and maintaining high diversity of organisms associated, but also it seems to be a good alternative to maintaining desirable water-supply quality for aquaculture farms.

  7. Water quality and communities associated with macrophytes in a shallow water-supply reservoir on an aquaculture farm.

    PubMed

    Sipaúba-Tavares, L H; Dias, S G

    2014-05-01

    Plankton communities and macrofauna associated to aquatic macrophyte stands in a shallow water-supply reservoir (21°14'09″S; 48°18'38″W) on an aquaculture farm were compared to evaluate the relationship between organism densities and some abiotic features of the reservoir. Water and communities associated were sampled at two sites, one in an area with the predominance of Eichhornia azurea (Sw.) Kunth and the other with the predominance of Salvinia auriculata Aublet. Communities associated with macrophytes were sampled with floating quadrants (0.5 m2); the macrophytes were washed and plankton and macrofauna were fixated with 4% formalin and 1% lugol iodine; the specimens were then identified and counted. Plankton and macrofauna communities associated with S. auriculata and E. azurea had a similar diversity of species but different (p<0.05) in the abundance of associated organisms. Eichhornia azurea had the highest contents in dry and wet weight, total phosphorus, total nitrogen and organic matter. Planktonic algae were directly correlated with biomass of E. azurea. The taxa with highest densities were Rotifera and Zygnematophyceae. Results showed that the environmental variables associated with macrophytes presence in the shallow reservoir is a strong predictor of favourable conditions to maintain great diversity plankton community and macrofauna associated with plants. The role of macrophytes is important for not only stabilising the clear-water state and maintaining high diversity of organisms associated, but also it seems to be a good alternative to maintaining desirable water-supply quality for aquaculture farms. PMID:25166326

  8. A new approach to model weakly nonhydrostatic shallow water flows in open channels with smoothed particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Chang, Tsang-Jung; Chang, Kao-Hua; Kao, Hong-Ming

    2014-11-01

    A new approach to model weakly nonhydrostatic shallow water flows in open channels is proposed by using a Lagrangian meshless method, smoothed particle hydrodynamics (SPH). The Lagrangian form of the Boussinesq equations is solved through SPH to merge the local and convective derivatives as the material derivative. In the numerical SPH procedure, the present study uses a predictor-corrector method, in which the pure space derivative terms (the hydrostatic and source terms) are explicitly solved and the mixed space and time derivatives term (the material term of B1 and B2) is computed with an implicit scheme. It is thus a convenient tool in the processes of the space discretization compared to other Eulerian approaches. Four typical benchmark problems in weakly nonhydrostatic shallow water flows, including solitary wave propagation, nonlinear interaction of two solitary waves, dambreak flow propagation, and undular bore development, are selected to employ model validation under the closed and open boundary conditions. Numerical results are compared with the analytical solutions or published laboratory and numerical results. It is found that the proposed approach is capable of resolving weakly nonhydrostatic shallow water flows. Thus, the proposed SPH approach can supplement the lack of the SPH-Boussinesq researches in the literatures, and provide an alternative to model weakly nonhydrostatic shallow water flows in open channels.

  9. Exact traveling wave solutions and L1 stability for the shallow water wave model of moderate amplitude

    NASA Astrophysics Data System (ADS)

    Wang, Ying; Guo, Yunxi

    2016-07-01

    In this paper, we developed, for the first time, the exact expressions of several periodic travelling wave solutions and a solitary wave solution for a shallow water wave model of moderate amplitude. Then, we present the existence theorem of the global weak solutions. Finally, we prove the stability of solution in L1(R) space for the Cauchy problem of the equation.

  10. Meshless collocation methods for the numerical solution of elliptic boundary valued problems the rotational shallow water equations on the sphere

    NASA Astrophysics Data System (ADS)

    Blakely, Christopher D.

    This dissertation thesis has three main goals: (1) To explore the anatomy of meshless collocation approximation methods that have recently gained attention in the numerical analysis community; (2) Numerically demonstrate why the meshless collocation method should clearly become an attractive alternative to standard finite-element methods due to the simplicity of its implementation and its high-order convergence properties; (3) Propose a meshless collocation method for large scale computational geophysical fluid dynamics models. We provide numerical verification and validation of the meshless collocation scheme applied to the rotational shallow-water equations on the sphere and demonstrate computationally that the proposed model can compete with existing high performance methods for approximating the shallow-water equations such as the SEAM (spectral-element atmospheric model) developed at NCAR. A detailed analysis of the parallel implementation of the model, along with the introduction of parallel algorithmic routines for the high-performance simulation of the model will be given. We analyze the programming and computational aspects of the model using Fortran 90 and the message passing interface (mpi) library along with software and hardware specifications and performance tests. Details from many aspects of the implementation in regards to performance, optimization, and stabilization will be given. In order to verify the mathematical correctness of the algorithms presented and to validate the performance of the meshless collocation shallow-water model, we conclude the thesis with numerical experiments on some standardized test cases for the shallow-water equations on the sphere using the proposed method.

  11. A high-resolution finite volume model for shallow water flow on uneven bathymetry using quadrilateral meshes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A two-dimensional cell-centred finite volume model for quadrilateral grids is presented. The solution methodology of the depth-averaged shallow water equations is based upon a Godunov-type upwind finite volume formulation, whereby the inviscid fluxes of the system of equations are obtained using the...

  12. Differential severity of Permian Triassic environmental changes on Tethyan shallow-water carbonate platforms

    NASA Astrophysics Data System (ADS)

    Weidlich, Oliver; Bernecker, Michaela

    2007-01-01

    impoverished bioclastic packstone capped by an unconformity, marks the onset of platform drowning which resulted from the end-Guadalupian mass extinction. Above, a polymict breccia witnessed rift pulses of the Neo-Tethys. The overlying pelagic mud- and packstone contains radiolarians and rare foraminifera of Lopingian age, and overlying microbialites. In the Carnian, tropical shallow-water carbonate production restarted with a low-relief platform and culminated in a Norian-Rhaetian reef-rimmed platform. Stacked Lofer cycles dominated the inner platform of Jebel Kawr (Misfah Formation). We here propose a differential onset and severity of the Late Permian mass extinctions for carbonate platforms. On the Arabian Plate, tropical carbonate production collapsed after the end-Lopingian mass extinction and was replaced by microbialites and sea-floor cements during the earliest Triassic. After approximately six million years, tropical shallow-water carbonate production resumed in the Middle Triassic. Neo-Tethyan isolated platforms drowned shortly after the end-Guadalupian mass extinction and did not recover before the Late Triassic. Absence of shallow-water limestone suggests that carbonate production of isolated platforms ceased for about 30 million years, a period exceeding the recovery of most marine ecosystems.

  13. Nitrogen cycling between sediment and the shallow-water column in the transition zone of the Potomac River and estuary. I. Nitrate and ammonium fluxes

    USGS Publications Warehouse

    Simon, N.S.

    1988-01-01

    A three-year study of seasonal variation in water-column and sediment nitrogen species was conducted in the transition zone of the Potomac River 35 m from the Virginia shore at a site with an average water-column depth of approximately 1 m over sandy sediment. A diffusion-controlled sampler was used to collect water samples from the water column, at the interface between the water column and sediment, and at several tens of centimeters into the sediment. Nitrate was the predominant dissolved nitrogen species in the water column. The importance of denitrification was inferred by nitrate fluxes which were directed into the sediment from the water column during approximately 75% of the sampling periods and ranged from 0??02 to 0??69 mmol m-2 day-1. Flux of nitrate from the sediment into the water column, ???0??1 mmol m-2 day-1, due possibly to nitrification in surficial sediment, occurred during one spring and two summer sampling periods. Ammonium fluxes were less than 0??1 mmol m-2 day-1 during 90% of the sampling periods. Of the ammonium fluxes that were >0??05 mmol m-2 day-1, all were fluxes into the sediment during sampling periods when sediment resuspension occurred, and all were into the water column during periods of calm. The mean value of ammonium flux (0??005 ?? 0??05 mmol m-2 day-1) from the sandy, shallow-water sediments was two orders of magnitude less than the ammonium fluxes from the deeper, silty channel sediments in the same reach of the river. Diffusive flux calculations suggest that approximately one order of magnitude more nitrate than ammonium is cycled between the shallow-water column and the sandy sediment in the transition zone of the Potomac River. ?? 1988.

  14. Dynamic drivers of a shallow-water hydrothermal vent ecogeochemical system (Milos, Eastern Mediterranean)

    NASA Astrophysics Data System (ADS)

    Yücel, Mustafa; Sievert, Stefan; Giovanelli, Donato; Foustoukos, Dionysis; DeForce, Emelia; Thomas, François; Vetriani, Constantino; Le Bris, Nadine

    2014-05-01

    Shallow-water hydrothermal vents share many characteristics with their deep-sea analogs. However, despite ease of access, much less is known about the dynamics of these systems. Here, we report on the spatial and temporal chemical variability of a shallow-water vent system at Paleochori Bay, Milos Island, Greece, and on the bacterial and archaeal diversity of associated sandy sediments. Our multi-analyte voltammetric profiles of dissolved O2 and hydrothermal tracers (e.g. Fe2+, FeSaq, Mn2+) on sediment cores taken along a transect in hydrothermally affected sediments indicate three different areas: the central vent area (highest temperature) with a deeper penetration of oxygen into the sediment, and a lack of dissolved Fe2+ and Mn2+; a middle area (0.5 m away) rich in dissolved Fe2+ and Mn2+ (exceeding 2 mM) and high free sulfide with potential for microbial sulfide oxidation as suggested by the presence of white mats at the sediment surface; and, finally, an outer rim area (1-1.5 m away) with lower concentrations of Fe2+ and Mn2+ and higher signals of FeSaq, indicating an aged hydrothermal fluid contribution. In addition, high-frequency temperature series and continuous in situ H2S measurements with voltammetric sensors over a 6-day time period at a distance 0.5 m away from the vent center showed substantial temporal variability in temperature (32 to 46 ºC ) and total sulfide (488 to 1329 µM) in the upper sediment layer. Analysis of these data suggests that tides, winds, and abrupt geodynamic events generate intermittent mixing conditions lasting for several hours to days. Despite substantial variability, the concentration of sulfide available for chemoautotrophic microbes remained high. These findings are consistent with the predominance of Epsilonproteobacteria in the hydrothermally influenced sediments Diversity and metagenomic analyses on sediments and biofilm collected along a transect from the center to the outer rim of the vent provide further insights on

  15. Shallow Water Euxinia and Density Stratification of the Cenomanian/Turonian Western Interior Seaway in Texas

    NASA Astrophysics Data System (ADS)

    Wehner, M.; Pope, M. C.; Tice, M. M.; Gardner, R.; Donovan, A. D.; Staerker, S.; Lyon, T.; Maulana, I.; Pramudito, A.; Xu, G.; Zeng, Z.

    2014-12-01

    The Eagle Ford Group was deposited at the south and east side of the Western Interior Seaway (WIS). These sediments contain evidence of anoxia and shallow-water deposition (between storm-wave and fair weather wave-base) in the proximal deposits at Lozier Canyon and Antonio Creek (LC/AC). Shallow-water (above storm wave-base) depositional conditions are mostly based on the suite of primary sedimentary structures that includes: hummocky cross-stratification (HCS), swaley cross-stratification (SCS), symmetric ripples, gutter casts and shell lags. These occur in outcrop and support the interpretation that LC/AC is the most proximal location relative to other study locations. At Hot Springs in Brewster County, Texas, sedimentary structures are limited to shell lags, a few symmetric ripples and low-angle laminations. This is consistent with the distal expression of storm deposits. The primary sedimentary structures from the core from the subsurface in McMullen County, south Texas, are limited to those of low-energy currents, scouring, and reworking, which could indicate it is in the distally steepened portion of the carbonate ramp on which Eagle Ford Groups are deposited. Pelagic foraminifera are the most microfossil and benthic foraminifera only occur in the Upper Eagle Formation at LC/AC. Molybdenum was also used as a proxy for occurrence and persistence of a sulfer-reducing zone. The geochemical data from the subsurface core suggests persistence of anoxia throughout its depositional history. At LC/AC, molybdenum is elevated (up to 5-6 times average shale value) and bioturbation in these zones is limited to the surfaces of symmetric ripples, suggesting that oxygenation events were brief and occurred only immediately after storm events. This is consistent with the hypothesis that the HCS, SCS, and symmetric ripples were caused by storms and temporarily mixed the ocean in a normally stratified water column. At LC/AC, the water column became persistently oxic from the

  16. Linear and nonlinear properties of numerical methods for the rotating shallow water equations

    NASA Astrophysics Data System (ADS)

    Eldred, Chris

    The shallow water equations provide a useful analogue of the fully compressible Euler equations since they have similar conservation laws, many of the same types of waves and a similar (quasi-) balanced state. It is desirable that numerical models posses similar properties, and the prototypical example of such a scheme is the 1981 Arakawa and Lamb (AL81) staggered (C-grid) total energy and potential enstrophy conserving scheme, based on the vector invariant form of the continuous equations. However, this scheme is restricted to a subset of logically square, orthogonal grids. The current work extends the AL81 scheme to arbitrary non-orthogonal polygonal grids, by combining Hamiltonian methods (work done by Salmon, Gassmann, Dubos and others) and Discrete Exterior Calculus (Thuburn, Cotter, Dubos, Ringler, Skamarock, Klemp and others). It is also possible to obtain these properties (along with arguably superior wave dispersion properties) through the use of a collocated (Z-grid) scheme based on the vorticity-divergence form of the continuous equations. Unfortunately, existing examples of these schemes in the literature for general, spherical grids either contain computational modes; or do not conserve total energy and potential enstrophy. This dissertation extends an existing scheme for planar grids to spherical grids, through the use of Nambu brackets (as pioneered by Rick Salmon). To compare these two schemes, the linear modes (balanced states, stationary modes and propagating modes; with and without dissipation) are examined on both uniform planar grids (square, hexagonal) and quasi-uniform spherical grids (geodesic, cubed-sphere). In addition to evaluating the linear modes, the results of the two schemes applied to a set of standard shallow water test cases and a recently developed forced-dissipative turbulence test case from John Thuburn (intended to evaluate the ability the suitability of schemes as the basis for a climate model) on both hexagonal

  17. Potential of a novel airborne hydrographic laser scanner for capturing shallow water bodies

    NASA Astrophysics Data System (ADS)

    Mandlburger, G.; Pfennigbauer, M.; Steinbacher, F.; Pfeifer, N.

    2012-04-01

    In this paper, we present the general design of a hydrographic laser scanner (prototype instrument) manufactured by the company Riegl Laser Measurement Systems in cooperation with the University of Innsbruck, Unit of Hydraulic Engineering. The instrument utilizes very short laser pulses (1 ns) in the green wavelength domain (λ=532 nm) capable of penetrating the water column. The backscattered signal is digitized in a waveform recorder at high frequency enabling sophisticated waveform processing, both, online during the flight and in post processing. In combination with a traditional topographic airborne laser scanner (λ=1500 nm) mounted on the same platform a complete hydrographic and topographic survey of the riparian foreland, the water surface and river bed can be carried out in a single campaign. In contrast to existing bathymetric LiDAR systems, the presented system uses only medium pulse energy but a high pulse repetition rate of up to 250 kHz and, thus, focuses on a detailed description of shallow water bodies under clear water conditions. Different potential fields of applications of the instrument (hydraulic modelling, hydro-morphology, hydro-biology, ecology, river restoration and monitoring) are discussed and the results of first real-world test flights in Austria and Germany are presented. It is shown that: (i) the high pulse repetition rate enables a point density on the ground of the water body of 10-20 pts/m2, (ii) the short laser pulses together with waveform processing enable a discrimination between water and ground reflections at a water depth of less than 25 cm, (iii) the combination of a topographic and hydrographic laser scanner enable the acquisition of the geometry data for hydraulic modeling in a single survey, thus, providing a much more homogeneous data basis compared to traditional techniques, and (iv) the high point density and the ranging accuracy of less than 10 cm enable a detailed and precise description of the river bed

  18. A variational implementation of the implicit particle filter for the shallow water equations

    NASA Astrophysics Data System (ADS)

    Souopgui, I.; Morzfeld, M.; Hussaini, M.; Chorin, A. J.

    2013-12-01

    The estimation of initial conditions for shallow water equations is a well known test problem for operational data assimilation techniques. The state-of-the-art approach to this problem is the variational method (4D-Var), i.e. the computation of the mode of the posterior probability density function (pdf) via the adjoint technique. We add a sampling step to the variational method, thus turning a computation of the conditional mode (a biased estimator) into a computation of the conditional mean (the minimum least square error estimator). Our implementation relies on implicit sampling, which is a Monte Carlo (MC) sampling scheme. The idea in implicit sampling is to first search for the high-probability region of the posterior pdf and then to find samples in this region. Because the samples are concentrated in the high-probability region, fewer samples are required than with competing MC schemes and, thus, implicit sampling can be more efficient than other MC schemes. The search for the high-probability region can be done via a numerical minimization that is very similar to the minimization in 4D-Var. Here, we use existing 4D-Var code to implement the implicit sampling scheme. Once the minimization problem is solved, we obtain samples by solving algebraic equations with a random right-hand-side. These equations can be solved efficiently, so that the additional cost of our approach, compared to 4D-Var, is small. We present numerical experiments to demonstrate the applicability and efficiency of our approach. These numerical experiments mimic physical experiments done with the CORIOLIS turntable in Grenoble (France), which are used to study the drift of a vortex. In particular we consider shallow water equations on a square domain (2.5m x 2.5m) with open boundary conditions and discretize the equations with finite differences on a staggered grid of size 256 x 256 and a fourth order Runge-Kutta time integrator. Our goal is to estimate the initial state (velocities and

  19. Shallow water mud-mounds of the Early Devonian Buchan Group, East Gippsland, Australia

    NASA Astrophysics Data System (ADS)

    Tosolini, A.-M. P.; Wallace, M. W.; Gallagher, S. J.

    2012-12-01

    The Lower Devonian Rocky Camp Member of the Murrindal Limestone, Buchan Group of southeastern Australia consists of a series of carbonate mud-mounds and smaller lagoonal bioherms. The Rocky Camp mound is the best exposed of the mud-mounds and has many characteristics in common with Waulsortian (Carboniferous) mounds. Detailed paleoecological and sedimentological studies indicate that the mound initially accumulated in the photic zone, in contrast to most of the previously recorded mud-mounds. Five facies are present in the mud-mound: a Dasycladacean Wackestone Facies at the base of the mound represents a moderate energy, shallow water bank environment within the photic zone. A Crinioidal Wackestone Facies was deposited in a laterally equivalent foreslope setting. A Poriferan-Crinoidal Mudstone Facies developed in a quiet, deeper water, lee-side mound setting associated with a minor relative sea-level rise. A Stromatoporoid-Coralline Packstone Facies in the upper part of the mound deposited in a high-energy, fair-weather wave base, mound-front environment. The crest of the mound is represented by a Crinoidal-Receptaculitid Packstone Facies indicative of a moderate-energy mound-top environment in the photic zone, sheltered by the mound-front stromatoporoid-coral communities. A mound flank facies is present on the southern side of the mound and this consists of high-energy crinoidal grainstones. Mud-mound deposition was terminated by a transgression that deposited dark gray, fossil-poor marl of the overlying Taravale Formation. The Rocky Camp mound appears to have originated in shallow water photic zone conditions and grew into a high-energy environment, with the mound being eventually colonized by corals and stromatoporoids. The indications of a high-energy environment during later mound growth (growth form of colonial metazoans and grainstones of the flanking facies) suggest that the micrite in the mound was autochthonous and implies the presence of an energy

  20. Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China.

    PubMed

    Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

    2015-01-01

    A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a "small plain, big front" character. PMID

  1. Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China

    PubMed Central

    Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

    2015-01-01

    A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a “small plain, big front” character. PMID

  2. Seafloor bathymetry in deep and shallow water marine CSEM responses of Nigerian Niger Delta oil field: Effects and corrections

    NASA Astrophysics Data System (ADS)

    Folorunso, Adetayo Femi; Li, Yuguo

    2015-12-01

    Topography distortions in bathymetrically acquired marine Controlled-Source Electromagnetic (mCSEM) responses are capable of misleading interpretation to the presence or absence of the target if not corrected for. For this reason, the effects and correction of bathymetry distortions on the deep and shallow seafloor mCSEM responses of the Niger Delta Oil province were examined in this paper. Marine CSEM response of the Niger Delta geological structure was modelled by using a 2.5D adaptive finite element forward modelling code. In both the deep water and shallow water cases, the bathymetry distortions in the electric field amplitude and phase were found to get smaller with increasing Tx-Rx offsets and contain short-wavelength components in the amplitude curves which persist at all Tx-Rx offsets. In the deep water, topographic effects on the reservoir signatures are not significant, but as water depth reduces, bathymetric distortions become more significant as a result of the airwave effects, masking the target signatures. The correction technique produces a good agreement between the flat-seafloor reservoir model and its equivalent bathymetric model in deep water at 0.25 Hz, while in shallow water, the corrected response only shows good agreement at shorter offsets but becomes complicated at longer offsets due to airwave effects. Transmission frequency was extended above and below 0.25 Hz in the frequency spectrum and the correction method applied. The bathymetry correction at higher frequency (1.75 Hz) is not effective in removing the topographic effects in either deep or shallow water. At 0.05 Hz for both seafloor scenarios, we obtained the best corrected amplitude profiles, removing completely the distortions from both topographic undulation and airwave effects in the shallow water model. Overall, the work shows that the correction technique is effective in reducing bathymetric effects in deep water at medium frequency and in both deep and shallow waters at a low

  3. Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China.

    PubMed

    Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

    2015-01-01

    A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a "small plain, big front" character.

  4. Devonian-Mississippian carbonate sequence in the Maiyumerak Mountains, western Brooks Range, Alaska

    SciTech Connect

    Dumoulin, J.A. ); Harris, A.G. )

    1990-05-01

    Essentially continuous, dominantly carbonate sedimentation occurred from at least the Early Devonian through the Mississippian in the area that is now the Maiyumerak Mountains, western Brooks Range. This succession is in striking contrast to Paleozoic sequences in the eastern Brooks Range and in the subsurface across northern Alaska, where uppermost Devonian-Mississippian clastic and Carboniferous carbonates unconformably overlie Proterozoic or lower Paleozoic metasedimentary or sedimentary rocks. Conodonts obtained throughout the Maiyumerak Mountains sequence indicate that any hiatus is less than a stage in duration, and there is no apparent physical evidence of unconformity within the succession. The sequence is best exposed northwest of the Eli River, where Emsian-Eifelian dolostones (Baird Group) are conformably overlain by Kinderhookian-Osagian sandy limestones (Utukok Formation) and Osagian-Chesterian fossiliferous limestones (Kogruk Formation) of the Lisburne Group. Conodont species assemblages and sedimentary structures indicate deposition in a range of shallow-water shelf environments. The sequence extends at least 30 km, from the Noatak Quadrangle northeast into the Baird Mountains Quadrangle; its easternmost extent has not been definitively determined. The Ellesmerian orogeny, thought to have produced the extensive middle Paleozoic unconformity seen through much of northern Alaska apparently had little effect on this western Brooks Range sedimentary succession.

  5. Global change and modern coral reefs: New opportunities to understand shallow-water carbonate depositional processes

    NASA Astrophysics Data System (ADS)

    Hallock, Pamela

    2005-04-01

    Human activities are impacting coral reefs physically, biologically, and chemically. Nutrification, sedimentation, chemical pollution, and overfishing are significant local threats that are occurring worldwide. Ozone depletion and global warming are triggering mass coral-bleaching events; corals under temperature stress lose the ability to synthesize protective sunscreens and become more sensitive to sunlight. Photo-oxidative stress also reduces fitness, rendering reef-building organisms more susceptible to emerging diseases. Increasing concentration of atmospheric CO 2 has already reduced CaCO 3 saturation in surface waters by more than 10%. Doubling of atmospheric CO 2 concentration over pre-industrial concentration in the 21st century may reduce carbonate production in tropical shallow marine environments by as much as 80%. As shallow-water reefs decline worldwide, opportunities abound for researchers to expand understanding of carbonate depositional systems. Coordinated studies of carbonate geochemistry with photozoan physiology and calcification, particularly in cool subtropical-transition zones between photozoan-reef and heterotrophic carbonate-ramp communities, will contribute to understanding of carbonate sedimentation under environmental change, both in the future and in the geologic record. Cyanobacteria are becoming increasingly prominent on declining reefs, as these microbes can tolerate strong solar radiation, higher temperatures, and abundant nutrients. The responses of reef-dwelling cyanobacteria to environmental parameters associated with global change are prime topics for further research, with both ecological and geological implications.

  6. Modeling floods in a dense urban area using 2D shallow water equations

    NASA Astrophysics Data System (ADS)

    Mignot, E.; Paquier, A.; Haider, S.

    2006-07-01

    SummaryA code solving the 2D shallow water equations by an explicit second-order scheme is used to simulate the severe October 1988 flood in the Richelieu urban locality of the French city of Nîmes. A reference calculation using a detailed description of the street network and of the cross-sections of the streets, considering impervious residence blocks and neglecting the flow interaction with the sewer network provides a mean peak water elevation 0.13 m lower than the measured flood marks with a standard deviation between the measured and computed water depths of 0.53 m. Sensitivity analysis of various topographical and numerical parameters shows that globally, the results keep the same level of accuracy, which reflects both the stability of the calculation method and the smoothening of results. However, the local flow modifications due to change of parameter values can drastically modify the local water depths, especially when the local flow regime is modified. Furthermore, the flow distribution to the downstream parts of the city can be altered depending on the set of parameters used. Finally, a second event, the 2002 flood, was simulated with the calibrated model providing results similar to 1988 flood calculation. Thus, the article shows that, after calibration, a 2D model can be used to help planning mitigation measures in a dense urban area.

  7. Ensemble variational data assimilation with a shallow-water model : preliminary results

    NASA Astrophysics Data System (ADS)

    Brajard, Julien; Sirven, Jérôme; Talagrand, Olivier

    2016-04-01

    The objective of ensemble data assimilation is to produce an ensemble of analysis from observations and a numerical model which is representative of the uncertainty of the system. In a bayesian framework, the ensemble represents a sampling of the state vector probability distribution conditioned to the available knowledge of the system, denoted the a-posteriori probability distribution. Ensemble variational data assimilation (EnsVar) consists in producing such an ensemble by perturbating N times the observations according to their error law, and run a standard variationnal assimilation for each perturbation. An ensemble of N members is then produced. In the case of linear models, there is a theoretical guarantee that this ensemble is a sampling of the a-posteriori probability. But there is no theoretical result in the non-linear case. Numerical experiments using non-linear numerical models suggest that the conclusion reached for linear models still stands for non linear toy models. The objective of the present work is to show preliminary results of EnsVar applied to a more realistic model : a shallow-water model. Some statistical properties of the ensemble are presented, and the sensitivity to the main features of the assimilation system (number, distribution of observations, size of the assimilation window, ...) are also studied.

  8. Finite-volume component-wise TVD schemes for 2D shallow water equations

    NASA Astrophysics Data System (ADS)

    Lin, Gwo-Fong; Lai, Jihn-Sung; Guo, Wen-Dar

    Four finite-volume component-wise total variation diminishing (TVD) schemes are proposed for solving the two-dimensional shallow water equations. In the framework of the finite volume method, a proposed algorithm using the flux-splitting technique is established by modifying the MacCormack scheme to preserve second-order accuracy in both space and time. Based on this algorithm, four component-wise TVD schemes, including the Liou-Steffen splitting (LSS), van Leer splitting, Steger-Warming splitting and local Lax-Friedrichs splitting schemes, are developed. These schemes are verified through the simulations of the 1D dam-break, the oblique hydraulic jump, the partial dam-break and circular dam-break problems. It is demonstrated that the proposed schemes are accurate, efficient and robust to capture the discontinuous shock waves without any spurious oscillations in the complex flow domains with dry-bed situation, bottom slope or friction. The simulated results also show that the LSS scheme has the best numerical accuracy among the schemes tested.

  9. Integrating Sensors into a Marine Drone for Bathymetric 3D Surveys in Shallow Waters.

    PubMed

    Giordano, Francesco; Mattei, Gaia; Parente, Claudio; Peluso, Francesco; Santamaria, Raffaele

    2015-12-29

    This paper demonstrates that accurate data concerning bathymetry as well as environmental conditions in shallow waters can be acquired using sensors that are integrated into the same marine vehicle. An open prototype of an unmanned surface vessel (USV) named MicroVeGA is described. The focus is on the main instruments installed on-board: a differential Global Position System (GPS) system and single beam echo sounder; inertial platform for attitude control; ultrasound obstacle-detection system with temperature control system; emerged and submerged video acquisition system. The results of two cases study are presented, both concerning areas (Sorrento Marina Grande and Marechiaro Harbour, both in the Gulf of Naples) characterized by a coastal physiography that impedes the execution of a bathymetric survey with traditional boats. In addition, those areas are critical because of the presence of submerged archaeological remains that produce rapid changes in depth values. The experiments confirm that the integration of the sensors improves the instruments' performance and survey accuracy.

  10. Shallow water SPH for flooding with dynamic particle coalescing and splitting

    NASA Astrophysics Data System (ADS)

    Vacondio, R.; Rogers, B. D.; Stansby, P. K.; Mignosa, P.

    2013-08-01

    In this paper an adaptive algorithm for Smoothed Particle Hydrodynamics (SPH) for the Shallow Water Equations (SWEs) is presented. The area of a particle is inversely proportional to depth giving poor resolution in small depths without particle refinement. This is a particular limitation for flooding problems of interest here. Higher resolution is created by splitting the particles, while particle coalescing (or merging) improves efficiency by reducing the number of the particles when acceptable. The new particle coalescing procedure merges two particles together if their area becomes less than a predefined threshold value. Both particle splitting and coalescing procedures conserve mass and momentum and the smoothing length of new particles is calculated by minimizing the density error of the SPH summation. The new dynamic particle refinement procedure is assessed by testing the numerical scheme against analytical, experimental and benchmark test cases. The analytical cases show that with particle splitting and coalescing typical convergence rates remain faster than linear. For the practical test case, in comparison to using particle splitting alone, the particle coalescing procedure leads to a significant reduction of computational time, by a factor of 15. This makes the computational time of the same order as mesh-based methods with the advantage of not having to specify a mesh over a flood domain of unknown extent a priori.

  11. Balancing the source terms in a SPH model for solving the shallow water equations

    NASA Astrophysics Data System (ADS)

    Xia, Xilin; Liang, Qiuhua; Pastor, Manuel; Zou, Weilie; Zhuang, Yan-Feng

    2013-09-01

    A shallow flow generally features complex hydrodynamics induced by complicated domain topography and geometry. A numerical scheme with well-balanced flux and source term gradients is therefore essential before a shallow flow model can be applied to simulate real-world problems. The issue of source term balancing has been exhaustively investigated in grid-based numerical approaches, e.g. discontinuous Galerkin finite element methods and finite volume Godunov-type methods. In recent years, a relatively new computational method, smooth particle hydrodynamics (SPH), has started to gain popularity in solving the shallow water equations (SWEs). However, the well-balanced problem has not been fully investigated and resolved in the context of SPH. This work aims to discuss the well-balanced problem caused by a standard SPH discretization to the SWEs with slope source terms and derive a corrected SPH algorithm that is able to preserve the solution of lake at rest. In order to enhance the shock capturing capability of the resulting SPH model, the Monotone Upwind-centered Scheme for Conservation Laws (MUSCL) is also explored and applied to enable Riemann solver based artificial viscosity. The new SPH model is validated against several idealized benchmark tests and a real-world dam-break case and promising results are obtained.

  12. Numerical treatment in resonant regime for shallow water equations with discontinuous topography

    NASA Astrophysics Data System (ADS)

    Thanh, Mai Duc

    2013-02-01

    This paper deals with numerical treatments for the shallow water equations with discontinuous topography when the initial data belong to both supersonic region and subsonic region. This kind of data are present in both engineering and rivers, but they are not always well-treated in existing schemes. Our goal is to improve the well-balanced scheme constructed earlier in our work by introducing a computing corrector into the construction of the scheme. First, a further study in the construction of the well-balanced scheme reveals that the errors could make the approximate states near the critical surface that ought to be in one side of the critical surface fall into the other side. This qualitative change, though small, may cause much larger errors following stationary hydraulic jumps formed from these approximate states due to the jump of the bottom. Then, we introduce a corrector in the computing algorithm that selects the equilibrium states in the construction of the well-balanced scheme such that the approximate stationary hydraulic jumps always remain in the right region. Numerical tests show that the well-balanced method using an underlying numerical flux such as Lax-Friedrichs flux, FORCE, GFORCE, or Roe fluxes can approximate very well the exact solution even when the initial data are on both supercritical region and subcritical region.

  13. Snorkelling and trampling in shallow-water fringing reefs: risk assessment and proposed management strategy.

    PubMed

    Hannak, Judith S; Kompatscher, Sarah; Stachowitsch, Michael; Herler, Jürgen

    2011-10-01

    Shallow reefs (reef flats <1.5 m) in the northern Red Sea are impacted by growing tourism that includes swimmers, snorkellers and reef walkers but have largely been neglected in past studies. We selected a fringing reef along the lagoon of Dahab (Sinai, Egypt) as a model for a management strategy. Point-intercept line transects were used to determine substrate composition, coral community and condition, and the coral damage index (CDI) was applied. Approximately 84% of the coral colonies showed signs of damage such as breakage, partial mortality or algal overgrowth, especially affecting the most frequent coral genus Acropora. Questionnaires were used to determine the visitors' socio-economic background and personal attitudes regarding snorkelling, SCUBA-diving and interest in visiting a prospective snorkelling trail. Experiencing nature (97%) was by far the strongest motivation, and interest in further education about reef ecology and skill training was high. Less experienced snorkellers and divers--the target group for further education and skill training--were those most prepared to financially support such a trail. We therefore recommend a guided underwater snorkelling trail and restricting recreational use to a less sensitive 'ecotourism zone' while protecting the shallow reef flat. Artificial structures can complete the trail and offer the opportunity to snorkel over deeper areas at unfavourable tide or wind conditions. This approach provides a strategy for the management and conservation of shallow-water reefs, which are facing increasing human impact here and elsewhere. PMID:21708420

  14. Attenuation of sound in shallow-water areas with gas-saturated bottoms

    NASA Astrophysics Data System (ADS)

    Grigor'ev, V. A.; Lun'kov, A. A.; Petnikov, V. G.

    2015-01-01

    We investigated the specific features low-frequency (50-300 Hz) sound propagation in shallow-water areas to relatively small distances r ≈ 3 H-50 H from the sound source, where H is the waveguide depth. The bottoms of water areas were assumed to be fluid homogeneous gas-containing media. Situations were compared in which the sound velocity in the bottom is higher and lower than in the water layer (hard and soft bottom). It was confirmed in experiment that the average effective sound velocity in the bottom may have rather low values (≈100 m/s). The mode description of the acoustic field was used in calculations, and both propagating and outgoing modes, including quasi-modes, were taken into account. The averaged dependences of the field intensity decay on distance were obtained for different frequencies and sound velocities in the bottom. The sound damping factors β in the waveguide were found as functions of frequency and sound velocity in the bottom. It is shown that for a soft bottom, the value of β monotonically increases with an increase in the sound velocity in the bottom, while for a hard bottom, β monotonically decreases. The maximum of β depends on the sound frequency and is reached at the approximate equality of the sound velocities in the bottom and water.

  15. Analysis of triangular C-grid finite volume scheme for shallow water flows

    NASA Astrophysics Data System (ADS)

    Shirkhani, Hamidreza; Mohammadian, Abdolmajid; Seidou, Ousmane; Qiblawey, Hazim

    2015-08-01

    In this paper, a dispersion relation analysis is employed to investigate the finite volume triangular C-grid formulation for two-dimensional shallow-water equations. In addition, two proposed combinations of time-stepping methods with the C-grid spatial discretization are investigated. In the first part of this study, the C-grid spatial discretization scheme is assessed, and in the second part, fully discrete schemes are analyzed. Analysis of the semi-discretized scheme (i.e. only spatial discretization) shows that there is no damping associated with the spatial C-grid scheme, and its phase speed behavior is also acceptable for long and intermediate waves. The analytical dispersion analysis after considering the effect of time discretization shows that the Leap-Frog time stepping technique can improve the phase speed behavior of the numerical method; however it could not damp the shorter decelerated waves. The Adams-Bashforth technique leads to slower propagation of short and intermediate waves and it damps those waves with a slower propagating speed. The numerical solutions of various test problems also conform and are in good agreement with the analytical dispersion analysis. They also indicate that the Adams-Bashforth scheme exhibits faster convergence and more accurate results, respectively, when the spatial and temporal step size decreases. However, the Leap-Frog scheme is more stable with higher CFL numbers.

  16. A middle Devonian temperate water limestone-isotopes, stromatoporoids and shallow water facies

    SciTech Connect

    Wolosz, T.H.

    1995-09-01

    The Edgecliff Member of the Middle Devonian Onondaga Formation has long been of interest to exploration geologists because its pinnacle reefs and bioherms are potential natural gas reservoirs. Current evidence indicates that the Edgecliff was deposited in a shallow, temperate water environment suggesting that application of standard tropical carbonate models will be misleading. Three lines of evidence support the temperate water model for the Edgecliff. Carbon and oxygen isotopic analyses performed on 29 samples from the non-luminescent portions of 15 brachiopods with prismatic ultrastructure yield {delta}{sup 18}O values which are isotopically heavier than accepted values for Devonian sea-water, suggesting cool water conditions. The distribution of stromatoporoids (assumed warm water organisms) ranges from rare and small in the eastern part of New York State, to more common in Ontario, Canada. This trend in stromatoporoids appears to represent an increase in size and abundance as the distance from the paleo-equator decreases. Finally, previously unrecognized shallow water facies in the Edgecliff including thin, dolomitized and bioturbated carbonate muds, solitary rugosan biostromes and ridge-like fringing coral bioherms negate any possibility that the isotopic and paleobiologic data reflect deposition in deep, cooler waters as opposed to an overall temperate water environment.

  17. Finite element modeling of reverberation and transmission loss in shallow water waveguides with rough boundaries.

    PubMed

    Isakson, Marcia J; Chotiros, Nicholas P

    2011-03-01

    A finite element model for the reverberation and propagation in a shallow water waveguide with a sandy bottom was calculated for five different environments at a center frequency of 250 Hz. The various environments included a rough water/sediment interface, a rough air/water interface, roughness at both interfaces and downward and upward refracting sound speed profiles with roughness at both interfaces. When compared to other models of reverberation such as ray theory, coupled modes, and parabolic equations, finite elements predicted higher levels of reverberation. At early times, this is due to the "fathometer" return, energy that is normally incident on the boundaries at zero range. At later times, the increased reverberation was due to high angle scattering paths between the two interfaces. Differences in reverberation levels among the environments indicated that scattered energy from the air/water interface is transmitted into the bottom at steep angles. This led to a large decrease in reverberation for a rough air/water interface relative to a rough water/sediment interface. Sound speed profile effects on reverberation were minimal at this frequency range. Calculations of the scintillation index of the different environments indicated that most of the reverberation was relatively Rayleigh-like with heavier tailed distributions at longer ranges.

  18. Ambient noise imaging in warm shallow waters; robust statistical algorithms and range estimation.

    PubMed

    Chitre, Mandar; Kuselan, Subash; Pallayil, Venugopalan

    2012-08-01

    The high frequency ambient noise in warm shallow waters is dominated by snapping shrimp. The loud snapping noises they produce are impulsive and broadband. As the noise propagates through the water, it interacts with the seabed, sea surface, and submerged objects. An array of acoustic pressure sensors can produce images of the submerged objects using this noise as the source of acoustic "illumination." This concept is called ambient noise imaging (ANI) and was demonstrated using ADONIS, an ANI camera developed at the Scripps Institution of Oceanography. To overcome some of the limitations of ADONIS, a second generation ANI camera (ROMANIS) was developed at the National University of Singapore. The acoustic time series recordings made by ROMANIS during field experiments in Singapore show that the ambient noise is well modeled by a symmetric α-stable (SαS) distribution. As high-order moments of SαS distributions generally do not converge, ANI algorithms based on low-order moments and fractiles are developed and demonstrated. By localizing nearby snaps and identifying the echoes from an object, the range to the object can be passively estimated. This technique is also demonstrated using the data collected with ROMANIS. PMID:22894207

  19. An investigation into environment dependent nanomechanical properties of shallow water shrimp (Pandalus platyceros) exoskeleton.

    PubMed

    Verma, Devendra; Tomar, Vikas

    2014-11-01

    The present investigation focuses on understanding the influence of change from wet to dry environment on nanomechanical properties of shallow water shrimp exoskeleton. Scanning Electron Microscopy (SEM) based measurements suggest that the shrimp exoskeleton has Bouligand structure, a key characteristic of the crustaceans. As expected, wet samples are found to be softer than dry samples. Reduced modulus values of dry samples are found to be 24.90 ± 1.14 GPa as compared to the corresponding values of 3.79 ± 0.69 GPa in the case of wet samples. Hardness values are found to be 0.86 ± 0.06 GPa in the case of dry samples as compared to the corresponding values of 0.17 ± 0.02 GPa in the case of wet samples. In order to simulate the influence of underwater pressure on the exoskeleton strength, constant load creep experiments as a function of wet and dry environments are performed. The switch in deformation mechanism as a function of environment is explained based on the role played by water molecules in assisting interface slip and increased ductility of matrix material in wet environment in comparison to the dry environment.

  20. High-frequency volume and boundary acoustic backscatter fluctuations in shallow water.

    PubMed

    Gallaudet, Timothy C; de Moustier, Christian P

    2003-08-01

    Volume and boundary acoustic backscatter envelope fluctuations are characterized from data collected by the Toroidal Volume Search Sonar (TVSS), a 68 kHz cylindrical array capable of 360 degrees multibeam imaging in the vertical plane perpendicular to its axis. The data are processed to form acoustic backscatter images of the seafloor, sea surface, and horizontal and vertical planes in the volume, which are used to attribute nonhomogeneous spatial distributions of zooplankton, fish, bubbles and bubble clouds, and multiple boundary interactions to the observed backscatter amplitude statistics. Three component Rayleigh mixture probability distribution functions (PDFs) provided the best fit to the empirical distribution functions of seafloor acoustic backscatter. Sea surface and near-surface volume acoustic backscatter PDFs are better described by Rayleigh mixture or log-normal distributions, with the high density portion of the distributions arising from boundary reverberation, and the tails arising from nonhomogeneously distributed scatterers such as bubbles, fish, and zooplankton. PDF fits to the volume and near-surface acoustic backscatter data are poor compared to PDF fits to the boundary backscatter, suggesting that these data may be better described by mixture distributions with component densities from different parametric families. For active sonar target detection, the results demonstrate that threshold detectors which assume Rayleigh distributed envelope fluctuations will experience significantly higher false alarm rates in shallow water environments which are influenced by near-surface microbubbles, aggregations of zooplankton and fish, and boundary reverberation.

  1. Conservative numerical simulation of multi-component transport in two-dimensional unsteady shallow water flow

    NASA Astrophysics Data System (ADS)

    Murillo, J.; García-Navarro, P.; Burguete, J.

    2009-08-01

    An explicit finite volume model to simulate two-dimensional shallow water flow with multi-component transport is presented. The governing system of coupled conservation laws demands numerical techniques to avoid unrealistic values of the transported scalars that cannot be avoided by decreasing the size of the time step. The presence of non conservative products such as bed slope and friction terms, and other source terms like diffusion and reaction, can make necessary the reduction of the time step given by the Courant number. A suitable flux difference redistribution that prevents instability and ensures conservation at all times is used to deal with the non-conservative terms and becomes necessary in cases of transient boundaries over dry bed. The resulting method belongs to the category of well-balanced Roe schemes and is able to handle steady cases with flow in motion. Test cases with exact solution, including transient boundaries, bed slope, friction, and reaction terms are used to validate the numerical scheme. Laboratory experiments are used to validate the techniques when dealing with complex systems as the κ-ɛ model. The results of the proposed numerical schemes are compared with the ones obtained when using uncoupled formulations.

  2. Balanced Central Schemes for the Shallow Water Equations on Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Bryson, Steve; Levy, Doron

    2004-01-01

    We present a two-dimensional, well-balanced, central-upwind scheme for approximating solutions of the shallow water equations in the presence of a stationary bottom topography on triangular meshes. Our starting point is the recent central scheme of Kurganov and Petrova (KP) for approximating solutions of conservation laws on triangular meshes. In order to extend this scheme from systems of conservation laws to systems of balance laws one has to find an appropriate discretization of the source terms. We first show that for general triangulations there is no discretization of the source terms that corresponds to a well-balanced form of the KP scheme. We then derive a new variant of a central scheme that can be balanced on triangular meshes. We note in passing that it is straightforward to extend the KP scheme to general unstructured conformal meshes. This extension allows us to recover our previous well-balanced scheme on Cartesian grids. We conclude with several simulations, verifying the second-order accuracy of our scheme as well as its well-balanced properties.

  3. Chemistry of calcium carbonate-rich shallow water sediments in the Bahamas

    SciTech Connect

    Morse, J.W.; Zullig, J.J.; Bernstein, L.D.; Millero, F.J.; Milne, P.; Mucci, A.; Choppin, G.R.

    1985-02-01

    The geochemistry of calcium carbonate-rich sediments from a variety of environments throughout the Bahamas was investigated with particular emphasis on the factors that control the pore water chemistry. Most sediments are supersaturated with respect to aragonite, the most abundant carbonate component. Experimental studies indicate that the observed in situ calcium carbonate ion activity products can often be produced as reversible metastable equilibria between the sediments and seawater. This is interpreted as being the result of interactions between the solutions and the minor high Mg-calcite component present in these sediments. Although the overlying waters are more supersaturated than the pore waters, carbonate dissolution, not precipitation, dominates in these sediments as a result of organic matter oxidation and the resulting increase in P/sub CO/sub 2//. The carbonate sediments of the Bahamas are remarkable for their purity, with the exception of special environments such as mangrove swamps and tidal flats with algal mats. Organic matter and heavy metal content is extremely low. Only minor sulfate reduction is occurring in most sediments. Phosphate is undetectable in all pore waters, probably as a result of adsorption on carbonate mineral surfaces. Other dissolved pore water components such as ammonia and DOC are much lower than typically found in shallow water fine-grained terrigeneous sediments.

  4. On the feasibility of the use of wind SAR to downscale waves on shallow water

    NASA Astrophysics Data System (ADS)

    Gutiérrez, O. Q.; Filipponi, F.; Taramelli, A.; Valentini, E.; Camus, P.; Méndez, F. J.

    2016-01-01

    In recent years, wave reanalyses have become popular as a powerful source of information for wave climate research and engineering applications. These wave reanalyses provide continuous time series of offshore wave parameters; nevertheless, in coastal areas or shallow water, waves are poorly described because spatial resolution is not detailed. By means of wave downscaling, it is possible to increase spatial resolution in high temporal coverage simulations, using forcing from wind and offshore wave databases. Meanwhile, the reanalysis wave databases are enough to describe the wave climate at the limit of simulations; wind reanalyses at an adequate spatial resolution to describe the wind structure near the coast are not frequently available. Remote sensing synthetic aperture radar (SAR) has the ability to detect sea surface signatures and estimate wind fields at high resolution (up to 300 m) and high frequency. In this work a wave downscaling is done on the northern Adriatic Sea, using a hybrid methodology and global wave and wind reanalysis as forcing. The wave fields produced were compared to wave fields produced with SAR winds that represent the two dominant wind regimes in the area: the bora (ENE direction) and sirocco (SE direction). Results show a good correlation between the waves forced with reanalysis wind and SAR wind. In addition, a validation of reanalysis is shown. This research demonstrates how Earth observation products, such as SAR wind fields, can be successfully up-taken into oceanographic modeling, producing similar downscaled wave fields when compared to waves forced with reanalysis wind.

  5. Application of third generation shallow water wave models in a tidal environment

    NASA Astrophysics Data System (ADS)

    Moghimi, Saeed; Gayer, Gerhard; Günther, Heinz; Shafieefar, Mehdi

    2005-04-01

    Wave modeling was performed in the German Bight of the North Sea during November 2002, using the spectral wave models, namely the K-model and Simulating WAves Nearshore (SWAN), both developed for applications in environments of shallow water depths. These models mainly differ with respect to their dissipation source term expressions and in exclusion or inclusion of nonlinear wave wave interactions. The K-model uses nonlinear dissipation and bottom dissipation, and neglects quadruplet wave wave interaction whereas, SWAN includes, besides bottom dissipation, dissipation by white-capping and depth induced wave breaking and triad wave wave interaction. The boundary spectra were extracted from the WAM model results of a North Sea hindcast of the HIPOCAS project, wind fields, tidal current and water level variations from the results of models used in the Belawatt project. The purpose of this study was to test the performance of both wave models to see whether they were able to predict near-shore wave conditions accurately. The runs were performed with and without tidal current and level variations to determine their effect on the waves. Comparisons of model results with buoy measurements show that taking into account tides and currents improve the spectral shape especially in areas of high current speeds. Whereas SWAN performed better in terms of spectral shape, especially in case of two peaked spectra, the K-model showed better results in terms of integrated parameters.

  6. Data assimilation (4D-VAR) to forecast flood in shallow-waters with sediment erosion

    NASA Astrophysics Data System (ADS)

    Bélanger, Eric; Vincent, Alain

    2005-01-01

    In this paper, the four-dimensional variational data assimilation technique (4D-VAR) is presented as a tool to forecast floods. Our study is limited to purely hydrological flows and supposes that the weather, here a big rain, has been already forecasted by meteorological services. The technique consists in minimizing, in the sense of Lagrange, the cost function: a measure of the difference between calculated data and available observations, here the water level. This is done under constraints that are the equations of the physical model. In our case, we modified the shallow-water equations to include a simplified sediment transport model. The steepest descent algorithm is then used to find the minimum. This is made possible because we can compute analytically the gradient of the cost function by using the adjoint equations of the model. As an application of the 4D-VAR technique, the overflowing of the Chicoutimi River at the Chute-Garneau dam, during the 1996 flood, is investigated. It is found that the 4D-VAR method reduces the error in the water height forecast even when the erosion model is not activated. In terms of Lyapunov exponents, we estimate the predictability horizon of such an event to be about half-an-hour after a big rain. However, this limit of predictability can be increased by using more observations or by using a finer computational grid.

  7. Frequency-selective fading statistics of shallow-water acoustic communication channel with a few multipaths

    NASA Astrophysics Data System (ADS)

    Bae, Minja; Park, Jihyun; Kim, Jongju; Xue, Dandan; Park, Kyu-Chil; Yoon, Jong Rak

    2016-07-01

    The bit error rate of an underwater acoustic communication system is related to multipath fading statistics, which determine the signal-to-noise ratio. The amplitude and delay of each path depend on sea surface roughness, propagation medium properties, and source-to-receiver range as a function of frequency. Therefore, received signals will show frequency-dependent fading. A shallow-water acoustic communication channel generally shows a few strong multipaths that interfere with each other and the resulting interference affects the fading statistics model. In this study, frequency-selective fading statistics are modeled on the basis of the phasor representation of the complex path amplitude. The fading statistics distribution is parameterized by the frequency-dependent constructive or destructive interference of multipaths. At a 16 m depth with a muddy bottom, a wave height of 0.2 m, and source-to-receiver ranges of 100 and 400 m, fading statistics tend to show a Rayleigh distribution at a destructive interference frequency, but a Rice distribution at a constructive interference frequency. The theoretical fading statistics well matched the experimental ones.

  8. Integrating Sensors into a Marine Drone for Bathymetric 3D Surveys in Shallow Waters

    PubMed Central

    Giordano, Francesco; Mattei, Gaia; Parente, Claudio; Peluso, Francesco; Santamaria, Raffaele

    2015-01-01

    This paper demonstrates that accurate data concerning bathymetry as well as environmental conditions in shallow waters can be acquired using sensors that are integrated into the same marine vehicle. An open prototype of an unmanned surface vessel (USV) named MicroVeGA is described. The focus is on the main instruments installed on-board: a differential Global Position System (GPS) system and single beam echo sounder; inertial platform for attitude control; ultrasound obstacle-detection system with temperature control system; emerged and submerged video acquisition system. The results of two cases study are presented, both concerning areas (Sorrento Marina Grande and Marechiaro Harbour, both in the Gulf of Naples) characterized by a coastal physiography that impedes the execution of a bathymetric survey with traditional boats. In addition, those areas are critical because of the presence of submerged archaeological remains that produce rapid changes in depth values. The experiments confirm that the integration of the sensors improves the instruments’ performance and survey accuracy. PMID:26729117

  9. Relating the performance of time-reversal-based underwater acoustic communications in different shallow water environments.

    PubMed

    Yang, T C

    2011-10-01

    The performance of underwater acoustic communications, such as the output signal-to-noise ratio (OSNR), is generally dependent on the channel specifics, hence a channel model is normally required as the performance of the channel equalizer depends on the number of tap coefficients used (e.g., a sparse equalizer) which are different for different oceans having different multipath arrivals. This letter presents theoretical arguments, and experimental data from different oceans that suggest that the increase of OSNR with the number of diverse receivers (in terms of the effective number of receivers) and the decrease of OSNR with the channel-estimation error follow a universal relationship using the time-reversal or correlation-based equalizer, despite the fact that the channels have very different properties. The reason is due to the fact that the OSNR is a function of the q function, the auto-correlation of the received impulse responses summed over all receiver channels, and the q function is approximately the same for all shallow waters given a sufficient (≥4-6) number of receivers.

  10. Integrating Sensors into a Marine Drone for Bathymetric 3D Surveys in Shallow Waters.

    PubMed

    Giordano, Francesco; Mattei, Gaia; Parente, Claudio; Peluso, Francesco; Santamaria, Raffaele

    2015-01-01

    This paper demonstrates that accurate data concerning bathymetry as well as environmental conditions in shallow waters can be acquired using sensors that are integrated into the same marine vehicle. An open prototype of an unmanned surface vessel (USV) named MicroVeGA is described. The focus is on the main instruments installed on-board: a differential Global Position System (GPS) system and single beam echo sounder; inertial platform for attitude control; ultrasound obstacle-detection system with temperature control system; emerged and submerged video acquisition system. The results of two cases study are presented, both concerning areas (Sorrento Marina Grande and Marechiaro Harbour, both in the Gulf of Naples) characterized by a coastal physiography that impedes the execution of a bathymetric survey with traditional boats. In addition, those areas are critical because of the presence of submerged archaeological remains that produce rapid changes in depth values. The experiments confirm that the integration of the sensors improves the instruments' performance and survey accuracy. PMID:26729117

  11. Snorkelling and trampling in shallow-water fringing reefs: risk assessment and proposed management strategy.

    PubMed

    Hannak, Judith S; Kompatscher, Sarah; Stachowitsch, Michael; Herler, Jürgen

    2011-10-01

    Shallow reefs (reef flats <1.5 m) in the northern Red Sea are impacted by growing tourism that includes swimmers, snorkellers and reef walkers but have largely been neglected in past studies. We selected a fringing reef along the lagoon of Dahab (Sinai, Egypt) as a model for a management strategy. Point-intercept line transects were used to determine substrate composition, coral community and condition, and the coral damage index (CDI) was applied. Approximately 84% of the coral colonies showed signs of damage such as breakage, partial mortality or algal overgrowth, especially affecting the most frequent coral genus Acropora. Questionnaires were used to determine the visitors' socio-economic background and personal attitudes regarding snorkelling, SCUBA-diving and interest in visiting a prospective snorkelling trail. Experiencing nature (97%) was by far the strongest motivation, and interest in further education about reef ecology and skill training was high. Less experienced snorkellers and divers--the target group for further education and skill training--were those most prepared to financially support such a trail. We therefore recommend a guided underwater snorkelling trail and restricting recreational use to a less sensitive 'ecotourism zone' while protecting the shallow reef flat. Artificial structures can complete the trail and offer the opportunity to snorkel over deeper areas at unfavourable tide or wind conditions. This approach provides a strategy for the management and conservation of shallow-water reefs, which are facing increasing human impact here and elsewhere.

  12. Influence of shallow water currents on the performance of a broadband time-reversing array

    NASA Astrophysics Data System (ADS)

    Sabra, Karim G.; Dowling, David R.

    2002-11-01

    In recent shallow water experiments, the temporal and spatial focusing properties of time-reversing arrays (TRAs) were shown to be robust in a reciprocal medium and useful for underwater applications. The presence of oceanic currents in coastal environments leads to nonreciprocal acoustic propagation. In this case, time-reversal invariance is modified because the propagation speed inhomogeneity depends on the direction of acoustic propagation. Therefore, similarly to phase coherent reciprocal transmissions, a TRA will be influenced by the current-induced effects but not by the scalar contributions due to temperature or salinity. TRA performance, in the presence of steady currents, is investigated both theoretically using a simple first order normal mode formulation and numerically using a parabolic equation code for moving media, GCPEM [D. Mikhin, J. Acoust. Soc. Am. 105, 1362 (1999)]. In a multipath shallow ocean environment, the retrofocus field is shifted relative to its location in a nonmoving medium. This shift depends on the current speed and the range-depth dependency of the ocean current profile because each acoustic mode is influenced differently. The possibility of using TRAs for monitoring coastal currents will be discussed.

  13. Examination of time-reversal acoustics in shallow water and applications to noncoherent underwater communications

    NASA Astrophysics Data System (ADS)

    Smith, Kevin B.; Abrantes, Antonio A. M.; Larraza, Andres

    2003-06-01

    The shallow water acoustic communication channel is characterized by strong signal degradation caused by multipath propagation and high spatial and temporal variability of the channel conditions. At the receiver, multipath propagation causes intersymbol interference and is considered the most important of the channel distortions. This paper examines the application of time-reversal acoustic (TRA) arrays, i.e., phase-conjugated arrays (PCAs), that generate a spatio-temporal focus of acoustic energy at the receiver location, eliminating distortions introduced by channel propagation. This technique is self-adaptive and automatically compensates for environmental effects and array imperfections without the need to explicitly characterize the environment. An attempt is made to characterize the influences of a PCA design on its focusing properties with particular attention given to applications in noncoherent underwater acoustic communication systems. Due to the PCA spatial diversity focusing properties, PC arrays may have an important role in an acoustic local area network. Each array is able to simultaneously transmit different messages that will focus only at the destination receiver node.

  14. Spectral analysis of approximations of Dirichlet-Neumann operators and nonlocal shallow water wave models

    NASA Astrophysics Data System (ADS)

    Vargas-Magaña, Rosa; Panayotaros, Panayotis

    2015-11-01

    We study the problem of wave propagation in a long-wave asymptotic regime over variable bottom of an ideal irrotational fluid in the framework of the Hamiltonian formulation in which the non-local Dirichlet-Neumann (DtN) operator appears explicitly in the Hamiltonian. We propose a non-local Hamiltonian model for bidirectional wave propagation in shallow water that involves pseudodifferential operators that approximate the DtN operator for variable depth. These models generalize the Boussinesq system as they include the exact dispersion relation in the case of constant depth. We present results for the normal modes and eigenfrequencies of the linearized problem. We see that variable topography introduces effects such as steepening of normal modes with increasing variation of depth, as well as amplitude modulation of the normal modes in certain wavelength ranges. Numerical integration shows that the constant depth nonlocal Boussinesq model with quadratic nonlinearity can capture the evolution obtained with higher order approximations of the DtN operator. In the case of variable depth we observe certain oscillations in width of the crest and also some interesting textures in the evolution of wave crests during the passage from obstacles.

  15. Results of an experiment using AUVs for shallow-water mine reconnaissance

    NASA Astrophysics Data System (ADS)

    Smith, Samuel M.; An, Edgar; Christensen, Reed; Kloske, John; Snowden, Scott; Kronen, David; Marquis, Larry

    1999-07-01

    As part of the South Florida Ocean Measurement Center in Ft. Lauderdale Florida, a shallow water range with mines has been set up for a series of MCM experiments using the FAU AUVs. The first experiment was conducted December of 1998. The planned objective was to quantify the performance of the Ocean Explorer AUV for mine reconnaissance tasks such as rapid environmental assessment, remote search, remote classification and remote identification of mine like objects both moored in the water column and laying on the sea floor. The primary sensors used for this test were high frequency side scan and ambient light video. In addition, a forward look sonar and a laser line scanner were fielded. A CTD and DVL/ADCP provide environmental data. The AUV first conducted a wide area side scan survey and environmental assessment. The AUV then returned and its data uploaded. Human operators post processed the side scan and manually detected and classified targets. The AUV was then programmed to revisit the targets and perform close in multiple sensor sweeps with side scan and video of each target. Manual post processing and analysis of this data proved sufficient information for more accurate classification and even identification of targets. This paper will present preliminary results of this experiment with likely implications to VSW MCM operations.

  16. Dynamics of turbulent western-boundary currents at low latitude in a shallow-water model

    NASA Astrophysics Data System (ADS)

    Akuetevi, C. Q. C.; Wirth, A.

    2015-06-01

    The dynamics of low latitude turbulent western-boundary currents (WBCs) crossing the Equator are considered using numerical results from integrations of a reduced-gravity shallow-water model. For viscosity values of 1000 m2 s-1 and greater, the boundary layer dynamics compares well to the analytical Munk-layer solution. When the viscosity is reduced, the boundary layer becomes turbulent and coherent structures in the form of anticyclonic eddies, bursts (violent detachments of the viscous sub-layer, VSL) and dipoles appear. Three distinct boundary layers emerge, the VSL, the advective boundary layer and the extended boundary layer. The first is characterized by a dominant vorticity balance between the viscous transport and the advective transport of vorticity; the second by a balance between the advection of planetary vorticity and the advective transport of relative vorticity. The extended boundary layer is the area to which turbulent motion from the boundary extends. The scaling of the three boundary layer thicknesses with viscosity is evaluated. Characteristic scales of the dynamics and dissipation are determined. A pragmatic approach to determine the eddy viscosity diagnostically for coarse-resolution numerical models is proposed.

  17. Dynamics of turbulent western boundary currents at low latitude in a shallow water model

    NASA Astrophysics Data System (ADS)

    Akuetevi, C. Q. C.; Wirth, A.

    2014-11-01

    The dynamics of low latitude turbulent western boundary currents crossing the equator is considered using numerical results from integrations of a reduced gravity shallow-water model. For viscosity values of 1000 m2 s-1 and more, the boundary layer dynamics compares well to the analytical Munk-layer solution. When the viscosity is reduced, the boundary layer becomes turbulent and coherent structures in form of anticyclonic eddies, bursts (violent detachments of the viscous sub-layer) and dipoles appear. Three distinct boundary layers emerge, the viscous sub-layer, the advective boundary layer and the extended boundary layer. The first is characterized by a dominant vorticity balance between the viscous transport and the advective transport of vorticity. The second by a balance between the advection of planetary vorticity and the advective transport of relative vorticity. The extended boundary layer is the area to which turbulent motion from the boundary extends. The scaling of the three boundary layer thicknesses with viscosity is evaluated. Characteristic scales of the dynamics and dissipation are determined. A pragmatic approach to determine the eddy viscosity diagnostically for coarse resolution numerical models is proposed.

  18. Dynamics of turbulent western boundary currents at low latitude in a shallow water model

    NASA Astrophysics Data System (ADS)

    Akuetevi, C. Q. C.; Wirth, A.

    2014-03-01

    The dynamics of low latitude turbulent western boundary currents, subject to two different types of idealized wind forcing, Monsoon Wind and Trade Wind, is considered using numerical results from integrations of a reduced gravity shallow-water model. For viscosity values of 1000 m2 s-1 and above, the boundary layer dynamics compares well to the analytical solutions of the Munk-layer and the inertial-layer, derived from quasigeostrophic theory. Modifications due to variations in the layer thickness (vortex stretching) are only important close to the boundary. When the viscosity is reduced the boundary layer becomes turbulent and coherent structures in form of anticyclonic eddies, bursts (violent detachments of the viscous sub-layer) and dipoles appear. Three distinct boundary layers emerge, the viscous sub-layer, the advective boundary layer and the extended boundary layer. The first is characterized by a dominant vorticity balance between the viscous transport and the advective transport of vorticity. The second by a balance between the advection of planetary vorticity and the advective transport of relative vorticity. The extended boundary layer is the area to which turbulent motion from the boundary extends. The scaling of the three boundary layer thicknesses with viscosity is evaluated. A pragmatic approach to determine the eddy viscosity diagnostically for coarse resolution numerical models is proposed.

  19. Benchmarking of a New Finite Volume Shallow Water Code for Accurate Tsunami Modelling

    NASA Astrophysics Data System (ADS)

    Reis, Claudia; Clain, Stephane; Figueiredo, Jorge; Baptista, Maria Ana; Miranda, Jorge Miguel

    2015-04-01

    Finite volume methods used to solve the shallow-water equation with source terms receive great attention on the two last decades due to its fundamental properties: the built-in conservation property, the capacity to treat correctly discontinuities and the ability to handle complex bathymetry configurations preserving the some steady-state configuration (well-balanced scheme). Nevertheless, it is still a challenge to build an efficient numerical scheme, with very few numerical artifacts (e.g. numerical diffusion) which can be used in an operational environment, and are able to better capture the dynamics of the wet-dry interface and the physical phenomenon that occur in the inundation area. We present here a new finite volume code and benchmark it against analytical and experimental results, and we test the performance of the code in the complex topographic of the Tagus Estuary, close to Lisbon, Portugal. This work is funded by the Portugal-France research agreement, through the research project FCT-ANR/MAT-NAN/0122/2012.

  20. Flood simulation using an open source quadtree grid shallow water flow solver

    NASA Astrophysics Data System (ADS)

    An, H.; Yu, S.

    2012-12-01

    We carry out performance testing of Gerris for flood simulation. Gerris Flow Solver is open source software and has the capability of adaptive quadtree grid generation. In particular, the shallow water flow solver within Gerris Flow Solver implements second-order accurate Gudunov type numerical schemes, with preserving the balance of source and flux terms on quadtree cut cell grids. The combination of quadtree grids with the cut cell method improves the flexibility of quadtree grids for grid generation. In addition, the model has the capacity of adaptive meshing in an easy and effective way, which can improve computational efficiency in 2D modeling. Pre- and post-processors are already well equipped for users. Finally, an extension such as bed erosion or sediment transport can be added if needed. Two flood events, Malpasset dam break in France and Baeksan levee failure in Korea, are simulated using Gerris, with adaptively refining meshes near water fronts and the river boundary. Simulation results are compared with survey data, experimental data as well as simulation results by other researchers. The simulation results demonstrate that the adaptive quadtree model can save approximately 95% of the computational cost while preserving the accuracy. Gerris is a very attractive alternative for flood managers given the favorable features demonstrated in this paper.

  1. Modelling rapid mass movements using the shallow water equations in Cartesian coordinates

    NASA Astrophysics Data System (ADS)

    Hergarten, S.; Robl, J.

    2015-03-01

    We propose a new method to model rapid mass movements on complex topography using the shallow water equations in Cartesian coordinates. These equations are the widely used standard approximation for the flow of water in rivers and shallow lakes, but the main prerequisite for their application - an almost horizontal fluid table - is in general not satisfied for avalanches and debris flows in steep terrain. Therefore, we have developed appropriate correction terms for large topographic gradients. In this study we present the mathematical formulation of these correction terms and their implementation in the open-source flow solver GERRIS. This novel approach is evaluated by simulating avalanches on synthetic and finally natural topographies and the widely used Voellmy flow resistance law. Testing the results against analytical solutions and the proprietary avalanche model RAMMS, we found a very good agreement. As the GERRIS flow solver is freely available and open source, it can be easily extended by additional fluid models or source areas, making this model suitable for simulating several types of rapid mass movements. It therefore provides a valuable tool for assisting regional-scale natural hazard studies.

  2. Mid-frequency geoacoustic inversion using bottom loss data from the Shallow Water 2006 Experiment.

    PubMed

    Yang, Jie; Jackson, Darrell R; Tang, Dajun

    2012-02-01

    Geoacoustic inversion work has typically been carried out at frequencies below 1 kHz, assuming flat, horizontally stratified bottom models. Despite the relevance to Navy sonar systems many of which operate at mid-frequencies (1-10 kHz), limited inversion work has been carried out in this frequency band. This paper is an effort to demonstrate the viability of geoacoustic inversion using bottom loss data between 2 and 5 kHz. The acoustic measurements were taken during the Shallow Water 2006 Experiment off the coast of New Jersey. A half-space bottom model, with three parameters density, compressional wave speed, and attenuation, was used for inversion by fitting the model to data in the least-square sense. Inverted sediment sound speed and attenuation were compared with direct measurements and with inversion results using different techniques carried out in SW06. Inverted results of the present work are consistent with other measurements, considering the known spatial variability in this area. The observations and modeling results demonstrate that forward scattering from topographical changes is important at mid-frequencies and should be taken into account in sound propagation predictions and geoacoustic inversion. To cope with fine-scale topographic variability, measurement technique such as averaging over tracks may be necessary.

  3. Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

    USGS Publications Warehouse

    Lucas, L.V.; Koseff, Jeffrey R.; Monismith, Stephen G.; Thompson, J.K.

    2009-01-01

    A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions. ?? 2008 Elsevier B.V.

  4. Subsurface detection of coral reefs in shallow waters using hyperspectral data

    NASA Astrophysics Data System (ADS)

    Rodriguez-Diaz, Eladio; Jimenez-Rodriguez, Luis O.; Velez-Reyes, Miguel; Gilbes, Fernando; DiMarzio, Charles A.

    2003-09-01

    Hyperspectral Remote Sensing has the potential to be used as an effective coral monitoring system from either space or airborne sensors. The problems to be addressed in hyperspectral imagery of coastal waters are related to the medium, which presents high scattering and absorption, and the object to be detected. The object to be detected, in this case coral reefs or different types of ocean floor, has a weak signal as a consequence of its interaction with the medium. The retrieval of information about these targets requires the development of mathematical models and processing tools in the area of inversion, image reconstruction and detection. This paper presents the development of algorithms that does not use labeled samples to detect coral reefs under coastal shallow waters. Synthetic data was generated to simulate data gathered using a high resolution imaging spectrometer (hyperspectral) sensor. A semi-analytic model that simplifies the radiative transfer equation was used to quantify the interaction between the object of interest, the medium and the sensor. Tikhonov method of regularization was used as a starting point in order to arrive at an inverse formulation that incorporates a priori information about the target. This expression will be used in an inversion process on a pixel by pixel basis to estimate the ocean floor signal. The a priori information is in the form of previously measured spectral signatures of objects of interest, such as sand, corals, and sea grass.

  5. Snorkelling and trampling in shallow-water fringing reefs: Risk assessment and proposed management strategy

    PubMed Central

    Hannak, Judith S.; Kompatscher, Sarah; Stachowitsch, Michael; Herler, Jürgen

    2011-01-01

    Shallow reefs (reef flats <1.5 m) in the northern Red Sea are impacted by growing tourism that includes swimmers, snorkellers and reef walkers but have largely been neglected in past studies. We selected a fringing reef along the lagoon of Dahab (Sinai, Egypt) as a model for a management strategy. Point-intercept line transects were used to determine substrate composition, coral community and condition, and the coral damage index (CDI) was applied. Approximately 84% of the coral colonies showed signs of damage such as breakage, partial mortality or algal overgrowth, especially affecting the most frequent coral genus Acropora. Questionnaires were used to determine the visitors’ socio-economic background and personal attitudes regarding snorkelling, SCUBA-diving and interest in visiting a prospective snorkelling trail. Experiencing nature (97%) was by far the strongest motivation, and interest in further education about reef ecology and skill training was high. Less experienced snorkellers and divers – the target group for further education and skill training – were those most prepared to financially support such a trail. We therefore recommend a guided underwater snorkelling trail and restricting recreational use to a less sensitive ‘ecotourism zone’ while protecting the shallow reef flat. Artificial structures can complete the trail and offer the opportunity to snorkel over deeper areas at unfavourable tide or wind conditions. This approach provides a strategy for the management and conservation of shallow-water reefs, which are facing increasing human impact here and elsewhere. PMID:21708420

  6. Advances in Shallow-Water, High-Resolution Seafloor Mapping: Integrating an Autonomous Surface Vessel (ASV) Into Nearshore Geophysical Studies

    NASA Astrophysics Data System (ADS)

    Denny, J. F.; O'Brien, T. F.; Bergeron, E.; Twichell, D.; Worley, C. R.; Danforth, W. W.; Andrews, B. A.; Irwin, B.

    2006-12-01

    The U.S. Geological Survey (USGS) has been heavily involved in geological mapping of the seafloor since the 1970s. Early mapping efforts such as GLORIA provided broad-scale imagery of deep waters (depths > 400 meters) within the Exclusive Economic Zone (EEZ). In the early 1990's, the USGS research emphasis shifted from deep- to shallow-water environments (inner continental shelf, nearshore, estuaries) to address pertinent coastal issues such as erosion, sediment availability, sediment transport, vulnerability of coastal areas to natural and anthropogenic hazards, and resource management. Geologic framework mapping in these shallow- water environments has provided valuable data used to 1) define modern sediment distribution and thickness, 2) determine underlying stratigraphic and structural controls on shoreline behavior, and 3) enable onshore-to- offshore geologic mapping within the coastal zone when coupled with subaerial techniques such as GPR and topographic LIDAR. Research in nearshore areas presents technological challenges due to the dynamics of the environment, high volume of data collected, and the geophysical limitations of operating in very shallow water. In 2004, the USGS, in collaboration with NOAA's Coastal Services Center, began a multi-year seafloor mapping effort to better define oyster habitats within Apalachicola Bay, Florida, a shallow water estuary along the northern Gulf of Mexico. The bay poses a technological challenge due to its shallow depths (< 4-m) and high turbidity that prohibits the use of bathymetric LIDAR. To address this extreme shallow water setting, the USGS incorporated an Autonomous Surface Vessel (ASV) into seafloor mapping operations, in June 2006. The ASV is configured with a chirp sub-bottom profiler (4 24 kHz), dual-frequency chirp sidescan-sonar (100/500 kHz), single-beam echosounder (235 kHz), and forward-looking digital camera, and will be used to delineate the distribution and thickness of surficial sediment, presence

  7. Shallow water radio-magnetotelluric (RMT) measurements in urban environment: A case study from Stockholm city

    NASA Astrophysics Data System (ADS)

    Mehta, Suman; Bastani, Mehrdad; Malehmir, Alireza; Wang, Shunguo; Pedersen, Laust

    2014-05-01

    The Radio-MagnetoTelluric (RMT) method uses the electromagnetic signal from distant radio transmitters in the frequency range 15 to 250 kHz. RMT applications in near-surface studies have already been well established. Two components of electric field and three components of magnetic field are measured. These measured components are related to each other via transfer functions which contain detailed information about the variation of electrical resistivity of the subsurface. The present study is carried out in the frame of TRUST (TRansparent Underground STructure) project supported by several research and public organizations as well as industry. The study area is located close to central Stockholm in Sweden where the Swedish traffic authority has planned to construct a 21-km long motorway to bypass the city. In order to reduce the impact on natural and cultural environments, 18 km of the motorway will be located in tunnels. The main objective of this study is thus to identify potential fracture zones and faults as well as the general geological settings. The proposed path of the tunnel partly passes under the Lake Mälaren at a depth of about 60 m. Thus a challenge was posed on the applicability of RMT method in shallow water environments. Successful applications of RMT measurements using the Uppsala University's EnviroMT system on land encouraged us to modify the system to acquire data over lake water especially in urban areas. Pioneered by the Geological Survey of Sweden (SGU), RMT data were collected over the Lake Mälaren in spring 2012. The prototype acquisition system did not only turn out to be appropriate for such a challenging environment, but it was also much more efficient as compared with land surveys. Fifty two lines including 1160 stations with an average spacing of 15 m were covered in three days. Cultural noise associated with the city-related environment had to be identified and filtered out before inversion could be carried out. Reliable estimates

  8. Waveguide invariant active sonar target detection and depth classification in shallow water

    NASA Astrophysics Data System (ADS)

    Goldhahn, Ryan A.

    Reverberation and clutter are two of the principle obstacles to active sonar target detection in shallow water. Diffuse seabed backscatter can obscure low energy target returns, while clutter discretes, specific features of the sea floor, produce temporally compact returns which may be mistaken for targets of interest. Detecting weak targets in the presence of reverberation and discriminating water column targets from bottom clutter are thus critical to good performance in active sonar. Both problems are addressed in this thesis using the time-frequency interference pattern described by a constant known as the waveguide invariant which summarizes in a scalar parameter the dispersive properties of the ocean environment. Conventional active sonar detection involves constant false alarm rate (CFAR) normalization of the reverberation return which does not account for the frequency-selective fading in a wideband pulse caused by multipath propagation. An alternative to conventional reverberation estimation is presented, motivated by striations observed in time-frequency analysis of active sonar data. A mathematical model for these reverberation striations is derived using waveguide invariant theory. This model is then used to motivate waveguide invariant reverberation estimation which involves averaging the time-frequency spectrum along these striations. An evaluation of this reverberation estimate using real Mediterranean data is given and its use in a generalized likelihood ratio test (GLRT) based CFAR detector is demonstrated. CFAR detection using waveguide invariant reverberation estimates is shown to out-perform conventional cell-averaged and frequency-invariant CFAR detection methods in shallow water environments producing strong reverberation returns which exhibit the described striations. Results are presented on simulated and real Mediterranean data from the SCARAB98 experiment. The ability to discriminate between water column targets and clutter discretes is

  9. Aragonite precipitation induced by anaerobic oxidation of methane in shallow-water seeps, Tyrrhenian Sea, Italy

    NASA Astrophysics Data System (ADS)

    Wiedling, Johanna; Kuhfuß, Hanna; Lott, Christian; Böttcher, Michael E.; Lichtschlag, Anna; Wegener, Gunter; Deusner, Christian; Bach, Wolfgang; Weber, Miriam

    2014-05-01

    In the shallow-water organic-poor silicate sands off the West coast of Elba, Italy, we found aragonite precipitates within a radius of 10 cm to methane seeps in 20 - 40 cm sediment depth. The shallow seep site was mapped by SCUBA diving and in an area of 100 m2 nine gas emission spots were observed. The gas emission, containing 73 Vol. % methane, was measured to be 0.72 L m-2 d-1. Findings of anaerobic methane oxidizing archea (ANME 1, 2, 2a, 2b) and sulphate reducing bacteria (SRB) as well as in vitro rate measurements of anaerobic oxidation of methane (AOM) with a maximum of 67 ± 7 nmol CH4 cm-3 d-1 led to the hypothesis that carbonate precipitation is coupled to these microbial processes. Porewater analysis showed elevated concentrations of dissolved inorganic carbon (DIC) (up to 15.5 mmol L-1) and hydrogen sulfide (up to 6.6 mmol L-1). The presence of bicarbonate and the ambient temperature (14 - 25 ° C) facilitate the precipitation of needle-shaped aragonite. Oxygen isotope compositions of the mineral are consistent with the ambient temperatures and may indicate a recent diagenetic formation of this mineral. Although precipitation should not be preserved in these sandy permeable sediments, influenced by seasonality, wave action, and fluid flow, we found up to 10-50 cm3 irregular pieces of cemented sand grains, very often encrusting dead seagrass rhizomes. Commonly known carbonate structures, especially from the deep sea, are chimneys, mounds, hardgrounds and nodules. These structures are well known from seep and vent sites, usually showing the same range of stable carbon isotope fractionation as the escaping methane. The permeable sediment at the Elba site possibly allows the gas to frequently change its pathway to the sediment surface and thus precipitation can occure at several spots and more irregular than in the reported sites. Preservation of precipitates, however, requires sufficient authigenic aragonite to be formed before fluid dynamics changed the

  10. Numerical experiments with an implicit particle filter for the shallow water equations

    NASA Astrophysics Data System (ADS)

    Souopgui, I.; Chorin, A. J.; Hussaini, M.

    2012-12-01

    The estimation of initial conditions for the shallow water equations for a given set of later data is a well known test problem for data assimilation codes. A popular approach to this problem is the variational method (4D-Var), i.e. the computation of the mode of the posterior probability density function (pdf) via the adjoint technique. Here, we improve on 4D-Var by computing the conditional mean (the minimum least square error estimator) rather than the mode (a biased estimator) and we do so with implicit sampling, a Monte Carlo (MC) importance sampling method. The idea in implicit sampling is to first search for the high-probability region of the posterior pdf and then to find samples in this region. Because the samples are concentrated in the high-probability region, fewer samples are required than with competing MC schemes. The search for the high-probability region can be implemented by a minimization that is very similar to the minimization in 4D-Var, and we make use of a 4D-Var code in our implementation. The samples are obtained by solving algebraic equations with a random right-hand-side. These equations can be solved efficiently, so that the additional cost of our approach, compared to traditional 4D-Var, is small. The long-term goal is to assimilate experimental data, obtained with the CORIOLIS turntable in Grenoble (France), to study the drift of a vortex. We present results from numerical twin experiments as a first step towards our long-term goal. We discretize the shallow water equations on a square domain (2.5m× 2.5m) using finite differences on a staggered grid of size 28× 28 and a fourth order Runge-Kutta. We assume open boundary conditions and estimate the initial state (velocities and surface height) given noisy observations of the state. We solve the optimization problem using a 4D-Var code that relies on a L-BFGS method; the random algebraic equations are solved with random maps, i.e. we look for solutions in given, but random, directions

  11. Proximate composition and fatty acid signatures of selected forage fish species in Prince William Sound, Alaska. Exxon Valdez Oil Spill Restoration Project 95121. Final report

    SciTech Connect

    Worth, G.A.J.; Miculka, T.A.

    1997-12-31

    The proximate composition and fatty acid signatures of several prey species, which are important for sea birds and marine mammals in Prince William Sound, Alaska, were determined. Fish were collected as part of the SEA cruises in the fall of 1995 and were frozen immediately and then shipped to Galveston for analysis. Fatty acid signatures of herring, pollock, and tomcod were consistent with previously reported data, Three different species of sole (English, rock, and flathead) were also consistent with previously reported data for yellowfin sole. Detailed analyses of individual rock fish suggest that this species may exhibit trends in some specific fatty acids (20:5 n-3, 22:6 n-3) which differ from herring or pollock.

  12. Impacts of ocean acidification on sediment processes in shallow waters of the Arctic Ocean.

    PubMed

    Gazeau, Frédéric; van Rijswijk, Pieter; Pozzato, Lara; Middelburg, Jack J

    2014-01-01

    Despite the important roles of shallow-water sediments in global biogeochemical cycling, the effects of ocean acidification on sedimentary processes have received relatively little attention. As high-latitude cold waters can absorb more CO2 and usually have a lower buffering capacity than warmer waters, acidification rates in these areas are faster than those in sub-tropical regions. The present study investigates the effects of ocean acidification on sediment composition, processes and sediment-water fluxes in an Arctic coastal system. Undisturbed sediment cores, exempt of large dwelling organisms, were collected, incubated for a period of 14 days, and subject to a gradient of pCO2 covering the range of values projected for the end of the century. On five occasions during the experimental period, the sediment cores were isolated for flux measurements (oxygen, alkalinity, dissolved inorganic carbon, ammonium, nitrate, nitrite, phosphate and silicate). At the end of the experimental period, denitrification rates were measured and sediment samples were taken at several depth intervals for solid-phase analyses. Most of the parameters and processes (i.e. mineralization, denitrification) investigated showed no relationship with the overlying seawater pH, suggesting that ocean acidification will have limited impacts on the microbial activity and associated sediment-water fluxes on Arctic shelves, in the absence of active bio-irrigating organisms. Only following a pH decrease of 1 pH unit, not foreseen in the coming 300 years, significant enhancements of calcium carbonate dissolution and anammox rates were observed. Longer-term experiments on different sediment types are still required to confirm the limited impact of ocean acidification on shallow Arctic sediment processes as observed in this study. PMID:24718610

  13. A piecewise modeling approach for climate sensitivity studies: Tests with a shallow-water model

    NASA Astrophysics Data System (ADS)

    Shao, Aimei; Qiu, Chongjian; Niu, Guo-Yue

    2015-10-01

    In model-based climate sensitivity studies, model errors may grow during continuous long-term integrations in both the "reference" and "perturbed" states and hence the climate sensitivity (defined as the difference between the two states). To reduce the errors, we propose a piecewise modeling approach that splits the continuous long-term simulation into subintervals of sequential short-term simulations, and updates the modeled states through re-initialization at the end of each subinterval. In the re-initialization processes, this approach updates the reference state with analysis data and updates the perturbed states with the sum of analysis data and the difference between the perturbed and the reference states, thereby improving the credibility of the modeled climate sensitivity. We conducted a series of experiments with a shallow-water model to evaluate the advantages of the piecewise approach over the conventional continuous modeling approach. We then investigated the impacts of analysis data error and subinterval length used in the piecewise approach on the simulations of the reference and perturbed states as well as the resulting climate sensitivity. The experiments show that the piecewise approach reduces the errors produced by the conventional continuous modeling approach, more effectively when the analysis data error becomes smaller and the subinterval length is shorter. In addition, we employed a nudging assimilation technique to solve possible spin-up problems caused by re-initializations by using analysis data that contain inconsistent errors between mass and velocity. The nudging technique can effectively diminish the spin-up problem, resulting in a higher modeling skill.

  14. Integral and integrable algorithms for a nonlinear shallow-water wave equation

    NASA Astrophysics Data System (ADS)

    Camassa, Roberto; Huang, Jingfang; Lee, Long

    2006-08-01

    An asymptotic higher-order model of wave dynamics in shallow water is examined in a combined analytical and numerical study, with the aim of establishing robust and efficient numerical solution methods. Based on the Hamiltonian structure of the nonlinear equation, an algorithm corresponding to a completely integrable particle lattice is implemented first. Each "particle" in the particle method travels along a characteristic curve. The resulting system of nonlinear ordinary differential equations can have solutions that blow-up in finite time. We isolate the conditions for global existence and prove l1-norm convergence of the method in the limit of zero spatial step size and infinite particles. The numerical results show that this method captures the essence of the solution without using an overly large number of particles. A fast summation algorithm is introduced to evaluate the integrals of the particle method so that the computational cost is reduced from O( N2) to O( N), where N is the number of particles. The method possesses some analogies with point vortex methods for 2D Euler equations. In particular, near singular solutions exist and singularities are prevented from occurring in finite time by mechanisms akin to those in the evolution of vortex patches. The second method is based on integro-differential formulations of the equation. Two different algorithms are proposed, based on different ways of extracting the time derivative of the dependent variable by an appropriately defined inverse operator. The integro-differential formulations reduce the order of spatial derivatives, thereby relaxing the stability constraint and allowing large time steps in an explicit numerical scheme. In addition to the Cauchy problem on the infinite line, we include results on the study of the nonlinear equation posed in the quarter (space-time) plane. We discuss the minimum number of boundary conditions required for solution uniqueness and illustrate this with numerical

  15. Successive bifurcations in a shallow-water model applied to the wind-driven ocean circulation

    NASA Astrophysics Data System (ADS)

    Speich, S.; Dijkstra, H.; Ghil, M.

    Climate - the "coarse-gridded" state of the coupled ocean - atmosphere system - varies on many time and space scales. The challenge is to relate such variation to specific mechanisms and to produce verifiable quantitative explanations. In this paper, we study the oceanic component of the climate system and, in particular, the different circulation regimes of the mid-latitude win driven ocean on the interannual time scale. These circulations are dominated by two counterrotating, basis scale gyres: subtropical and subpolar. Numerical techniques of bifurcation theory are used to stud the multiplicity and stability of the steady-state solution of a wind-driven, double-gyre, reduced-gravity, shallow water model. Branches of stationary solutions and their linear stability are calculated systematically as parameter are varied. This is one of the first geophysical studies i which such techniques are applied to a dynamical system with tens of thousands of degrees of freedom. Multiple stationary solutions obtain as a result of nonlinear interactions between the two main recirculating cell (cyclonic and anticyclonic) of the large- scale double-gyre flow. These equilibria appear for realistic values of the forcing and dissipation parameters. They undergo Hop bifurcation and transition to aperiodic solutions eventually occurs. The periodic and chaotic behaviour is probably related to an increased number of vorticity cells interaction with each other. A preliminary comparison with observations of the Gulf Stream and Kuroshio Extensions suggests that the intern variability of our simulated mid-latitude ocean is a important factor in the observed interannual variability o these two current systems.

  16. Methods for Quantifying Shallow-Water Habitat Availability in the Missouri River

    SciTech Connect

    Hanrahan, Timothy P.; Larson, Kyle B.

    2012-04-09

    As part of regulatory requirements for shallow-water habitat (SWH) restoration, the U.S. Army Corps of Engineers (USACE) completes periodic estimates of the quantity of SWH available throughout the lower 752 mi of the Missouri River. To date, these estimates have been made by various methods that consider only the water depth criterion for SWH. The USACE has completed estimates of SWH availability based on both depth and velocity criteria at four river bends (hereafter called reference bends), encompassing approximately 8 river miles within the lower 752 mi of the Missouri River. These estimates were made from the results of hydraulic modeling of water depth and velocity throughout each bend. Hydraulic modeling of additional river bends is not expected to be completed for deriving estimates of available SWH. Instead, future estimates of SWH will be based on the water depth criterion. The objective of this project, conducted by the Pacific Northwest National Laboratory for the USACE Omaha District, was to develop geographic information system methods for estimating the quantity of available SWH based on water depth only. Knowing that only a limited amount of water depth and channel geometry data would be available for all the remaining bends within the lower 752 mi of the Missouri River, the intent was to determine what information, if any, from the four reference bends could be used to develop methods for estimating SWH at the remaining bends. Specifically, we examined the relationship between cross-section channel morphology and relative differences between SWH estimates based on combined depth and velocity criteria and the depth-only criterion to determine if a correction factor could be applied to estimates of SWH based on the depth-only criterion. In developing these methods, we also explored the applicability of two commonly used geographic information system interpolation methods (TIN and ANUDEM) for estimating SWH using four different elevation data

  17. ANALYTICAL MODELS OF EXOPLANETARY ATMOSPHERES. I. ATMOSPHERIC DYNAMICS VIA THE SHALLOW WATER SYSTEM

    SciTech Connect

    Heng, Kevin; Workman, Jared E-mail: jworkman@coloradomesa.edu

    2014-08-01

    Within the context of exoplanetary atmospheres, we present a comprehensive linear analysis of forced, damped, magnetized shallow water systems, exploring the effects of dimensionality, geometry (Cartesian, pseudo-spherical, and spherical), rotation, magnetic tension, and hydrodynamic and magnetic sources of friction. Across a broad range of conditions, we find that the key governing equation for atmospheres and quantum harmonic oscillators are identical, even when forcing (stellar irradiation), sources of friction (molecular viscosity, Rayleigh drag, and magnetic drag), and magnetic tension are included. The global atmospheric structure is largely controlled by a single key parameter that involves the Rossby and Prandtl numbers. This near-universality breaks down when either molecular viscosity or magnetic drag acts non-uniformly across latitude or a poloidal magnetic field is present, suggesting that these effects will introduce qualitative changes to the familiar chevron-shaped feature witnessed in simulations of atmospheric circulation. We also find that hydrodynamic and magnetic sources of friction have dissimilar phase signatures and affect the flow in fundamentally different ways, implying that using Rayleigh drag to mimic magnetic drag is inaccurate. We exhaustively lay down the theoretical formalism (dispersion relations, governing equations, and time-dependent wave solutions) for a broad suite of models. In all situations, we derive the steady state of an atmosphere, which is relevant to interpreting infrared phase and eclipse maps of exoplanetary atmospheres. We elucidate a pinching effect that confines the atmospheric structure to be near the equator. Our suite of analytical models may be used to develop decisively physical intuition and as a reference point for three-dimensional magnetohydrodynamic simulations of atmospheric circulation.

  18. Application of 2D-Nonlinear Shallow Water Model of Tsunami by using Adomian Decomposition Method

    SciTech Connect

    Waewcharoen, Sribudh; Boonyapibanwong, Supachai; Koonprasert, Sanoe

    2008-09-01

    One of the most important questions in tsunami modeling is the estimation of tsunami run-up heights at different points along a coastline. Methods for numerical simulation of tsunami wave propagation in deep and shallow seas are well developed and have been widely used by many scientists (2001-2008). In this paper, we consider a two-dimensional nonlinear shallow water model of tsunami given by Tivon Jacobson is work [1]. u{sub t}+uu{sub x}+{nu}u{sub y} -c{sup 2}(h{sub x}+(h{sub b}){sub x}) {nu}{sub t}+u{nu}{sub x}+{nu}{nu}{sub y} = -c{sup 2}(h{sub y}+(h{sub b}){sub y}) h{sub t}+(hu){sub x}+(h{nu}){sub y} = 0 g-shore, h is surface elevation and s, t is time, u is velocity of cross-shore, {nu} is velocity of along-shore, h is surface elevation and h{sub b} is function of shore. This is a nondimensionalized model with the gravity g and constant reference depth H factored into c = {radical}(gH). We apply the Adomian Decompostion Method (ADM) to solve the tsunami model. This powerful method has been used to obtain explicit and numerical solutions of three types of diffusion-convection-reaction (DECR) equations. The ADM results for the tsunami model yield analytical solutions in terms of a rapidly convergent infinite power series. Symbolic computation, numerical results and graphs of solutions are obtained by Maple program.

  19. Long range dynamics of shallow water: renormalization, modulation and long cycles.

    NASA Astrophysics Data System (ADS)

    Gurarie, David

    2000-11-01

    Long-range dynamics of rotating shallow water (RSW) in the low Rossby-Froude regime, Ro = Fr ll1, exhibits multiscale structure with oscillations on different scales, from fast (gravity), to slower ``eddy turnover" , and yet slower ``long weather cycles". We search for an effective theory, that would ``average" fast oscillations on each scale, to produce higher level ``slow evolution". The principal source of fast gravity waves - dominant linear dispersion, could be eliminated by passing to the amplitude equations. In nonlinear systems, however, it does not remove oscillations completely, but transplants them to nonlinear terms. We implement the Bogoliubov-Mitropolskii averaging (BM) to produce renormalized system (RN-RSW), made of the resonant quadratic part of RSW, plus order(Ro) - cubic, and O(Ro^2) - quartic corrections. Renormalized system evolves on the first slow scale. Next we conduct the detailed analysis of RN-RSW for a single 9D-Lorenz-type triad. The triad system allows to implement second renormalization (from ``first slow" to ``second slow" time), based on its 5 adiabatic invariants: two conserved integrals of QGS-oscillator (a 3D subsystem, solvable in Jacobi elliptic functions), and three wave-intensities. The adiabatic invariants evolve on the second slow scale, and describe slow modulation of the basic QGS (Jacobi) parameters: modulus, period, magnitude. The off-shot of our two-step renormalization (BM followed by ``adiabatic averaging") are ``modulated oscillations" of the vortical and gravity modes. We verify the modulation phenomena by numeric simulations of (i) complete RSW-triad, vs. (ii) renormalized system (RN-RSW), vs. (iii) its ``modulated (adiabatic) approximation". All three show good qualitative agreement in their gross features. The analysis of adiabatic system explains some long range phases of the RSW-dynamics, like nonlinear ``relaxation", and ``intensification" regimes, and pinpoints ``modulation" as the principal long

  20. Improving shallow-water carbonate chemostratigraphy by means of rudist bivalve sclerochemistry

    NASA Astrophysics Data System (ADS)

    Huck, S.; Heimhofer, U.

    2015-09-01

    Deep-time shallow-marine carbonate platforms record distinct biotic responses to climatic and environmental stressors. Unfortunately, precise temporal assignment of these biotic responses is often problematical due to poor biostratigraphic control and/or a significant diagenetic overprint of the neritic bulk carbonate chemostratigraphic inventory. An accurate stratigraphic framework is essential to better understand the causal relation between biotic events recorded by carbonate platforms and environmental changes that, for instance, culminated in mass extinction events or prolonged episodes of oceanic anoxia. Here we provide an integrated carbon and strontium-isotope stratigraphy of the Early Cretaceous subtropical Provence carbonate platform in SE France that is based solely on pristine low-Mg calcite from rudist bivalves. Carbon-isotope data of geochemically screened rudist fragments enabled reconstruction of a characteristic Barremian pattern including the Mid-Barremian Event (MBE) that allowed for a precise correlation with stratigraphically well-constrained Tethyan shallow-water and hemipelagic reference sections. In order to evaluate ontogenetic carbon-isotope changes and the overall variability of the shell-derived carbon-isotope data, numerous sclerochronological carbon-isotope profiles of individual large rudist shells are presented. Strontium-isotope stratigraphy supports the carbon-isotope-based age of the studied sections, but also provides unequivocal evidence for a major hiatus in the depositional record covering large parts of the Late Barremian. In contrast to biostratigraphic and bulk carbonate chemostratigraphic archives, the here established chronostratigraphy of carbonate platform evolution in the southern Provence region demonstrates a twofold resurgence of rudist-rich carbonate platform production during the Early Aptian and arguably the latest Early Aptian.

  1. Field evaluation of shallow-water acoustic doppler current profiler discharge measurements

    USGS Publications Warehouse

    Rehmel, M.S.

    2007-01-01

    In 2004, the U.S. Geological Survey (USGS) Office of Surface Water staff and USGS Water Science employees began testing the StreamPro, an acoustic Doppler current profiler (ADCP) for shallow-water discharge measurements. Teledyne RD Instruments introduced the StreamPro in December of 2003. The StreamPro is designed to make a "moving boat" discharge measurement in streams with depths between 0.15 and 2 m. If the StreamPro works reliably in these conditions, it will allow for use of ADCPs in a greater number of streams than previously possible. Evaluation sites were chosen to test the StreamPro over a range of conditions. Simultaneous discharge measurements with mechanical and other acoustic meters, along with stable rating curves at established USGS streamflow-gaging stations, were used for comparisons. The StreamPro measurements ranged in mean velocity from 0.076 to 1.04 m/s and in discharge from 0.083 m 3/s to 43.4 m 3/s. Tests indicate that discharges measured with the StreamPro compare favorably to the discharges measured with the other meters when the mean channel velocity is greater than 0.25 m/s. When the mean channel velocity is less than 0.25 m/s, the StreamPro discharge measurements for individual transects have greater variability than those StreamPro measurements where the mean channel velocity is greater than 0.25 m/s. Despite this greater variation in individual transects, there is no indication that the StreamPro measured discharges (the mean discharge for all transects) are biased, provided that enough transects are used to determine the mean discharge. ?? 2007 ASCE.

  2. Impacts of ocean acidification on sediment processes in shallow waters of the Arctic Ocean.

    PubMed

    Gazeau, Frédéric; van Rijswijk, Pieter; Pozzato, Lara; Middelburg, Jack J

    2014-01-01

    Despite the important roles of shallow-water sediments in global biogeochemical cycling, the effects of ocean acidification on sedimentary processes have received relatively little attention. As high-latitude cold waters can absorb more CO2 and usually have a lower buffering capacity than warmer waters, acidification rates in these areas are faster than those in sub-tropical regions. The present study investigates the effects of ocean acidification on sediment composition, processes and sediment-water fluxes in an Arctic coastal system. Undisturbed sediment cores, exempt of large dwelling organisms, were collected, incubated for a period of 14 days, and subject to a gradient of pCO2 covering the range of values projected for the end of the century. On five occasions during the experimental period, the sediment cores were isolated for flux measurements (oxygen, alkalinity, dissolved inorganic carbon, ammonium, nitrate, nitrite, phosphate and silicate). At the end of the experimental period, denitrification rates were measured and sediment samples were taken at several depth intervals for solid-phase analyses. Most of the parameters and processes (i.e. mineralization, denitrification) investigated showed no relationship with the overlying seawater pH, suggesting that ocean acidification will have limited impacts on the microbial activity and associated sediment-water fluxes on Arctic shelves, in the absence of active bio-irrigating organisms. Only following a pH decrease of 1 pH unit, not foreseen in the coming 300 years, significant enhancements of calcium carbonate dissolution and anammox rates were observed. Longer-term experiments on different sediment types are still required to confirm the limited impact of ocean acidification on shallow Arctic sediment processes as observed in this study.

  3. Side-scan sonar imagery fusion for sea mine detection and classification in very shallow water

    NASA Astrophysics Data System (ADS)

    Aridgides, Tom; Fernandez, Manuel F.; Dobeck, Gerald J.

    2001-10-01

    An advanced, automatic, adaptive clutter suppression, sea mine detection, classification and fusion processing string has been developed and tested with high resolution sonar imagery dat. The overall computer-aided-detection/computer- aided-classification (CAD/CAC) string includes pre- processing, adaptive clutter filtering (ACF), normalization, detection, feature extraction, feature orthogonalization, subset feature selection, classification and fusion processing blocks. The ACF is an adaptive linear FIR filter, optimal in the Least Squares (LS) sense, and is applied to low-resolution data. Data pre-normalization, clipping and mean subtraction, allows application of a range dimension only ACF that is matched both to average highlight and shadow information, while simultaneously suppressing background clutter. Following post-ACF normalization, and detection consists of thresholding, clustering of exceedances and limiting the number of detections. Subsequently, features are extracted from high-resolution data and an orthogonalization transformation is applied to the features, enabling an efficient application of the optimal log-likelihood-ratio-test (LLRT) classification rule. Finally, the classified objects of three processing strings, developed by three different researchers, are fused, using an LLRT-based fusion rule. Processing string improvements have been developed over previous CAD/CAC and fusion string versions. The utility of the overall processing strings and their fusion was demonstrated with very shallow water high-resolution sonar imagery data sets, form a difficult environment. The processing string classification performance was optimized by appropriately selecting a subset of the original feature set. The fusion of the CAD/CAC processing strings resulted in improved mine classification capability, providing a three-fold false alarm rate reduction, compared to the best individual CAD/CAC processing string results.

  4. Analytical Models of Exoplanetary Atmospheres. I. Atmospheric Dynamics via the Shallow Water System

    NASA Astrophysics Data System (ADS)

    Heng, Kevin; Workman, Jared

    2014-08-01

    Within the context of exoplanetary atmospheres, we present a comprehensive linear analysis of forced, damped, magnetized shallow water systems, exploring the effects of dimensionality, geometry (Cartesian, pseudo-spherical, and spherical), rotation, magnetic tension, and hydrodynamic and magnetic sources of friction. Across a broad range of conditions, we find that the key governing equation for atmospheres and quantum harmonic oscillators are identical, even when forcing (stellar irradiation), sources of friction (molecular viscosity, Rayleigh drag, and magnetic drag), and magnetic tension are included. The global atmospheric structure is largely controlled by a single key parameter that involves the Rossby and Prandtl numbers. This near-universality breaks down when either molecular viscosity or magnetic drag acts non-uniformly across latitude or a poloidal magnetic field is present, suggesting that these effects will introduce qualitative changes to the familiar chevron-shaped feature witnessed in simulations of atmospheric circulation. We also find that hydrodynamic and magnetic sources of friction have dissimilar phase signatures and affect the flow in fundamentally different ways, implying that using Rayleigh drag to mimic magnetic drag is inaccurate. We exhaustively lay down the theoretical formalism (dispersion relations, governing equations, and time-dependent wave solutions) for a broad suite of models. In all situations, we derive the steady state of an atmosphere, which is relevant to interpreting infrared phase and eclipse maps of exoplanetary atmospheres. We elucidate a pinching effect that confines the atmospheric structure to be near the equator. Our suite of analytical models may be used to develop decisively physical intuition and as a reference point for three-dimensional magnetohydrodynamic simulations of atmospheric circulation.

  5. Hybrid ensemble 4DVar assimilation of stratospheric ozone using a global shallow water model

    NASA Astrophysics Data System (ADS)

    Allen, Douglas R.; Hoppel, Karl W.; Kuhl, David D.

    2016-07-01

    Wind extraction from stratospheric ozone (O3) assimilation is examined using a hybrid ensemble 4-D variational assimilation (4DVar) shallow water model (SWM) system coupled to the tracer advection equation. Stratospheric radiance observations are simulated using global observations of the SWM fluid height (Z), while O3 observations represent sampling by a typical polar-orbiting satellite. Four ensemble sizes were examined (25, 50, 100, and 1518 members), with the largest ensemble equal to the number of dynamical state variables. The optimal length scale for ensemble localization was found by tuning an ensemble Kalman filter (EnKF). This scale was then used for localizing the ensemble covariances that were blended with conventional covariances in the hybrid 4DVar experiments. Both optimal length scale and optimal blending coefficient increase with ensemble size, with optimal blending coefficients varying from 0.2-0.5 for small ensembles to 0.5-1.0 for large ensembles. The hybrid system outperforms conventional 4DVar for all ensemble sizes, while for large ensembles the hybrid produces similar results to the offline EnKF. Assimilating O3 in addition to Z benefits the winds in the hybrid system, with the fractional improvement in global vector wind increasing from ˜ 35 % with 25 and 50 members to ˜ 50 % with 1518 members. For the smallest ensembles (25 and 50 members), the hybrid 4DVar assimilation improves the zonal wind analysis over conventional 4DVar in the Northern Hemisphere (winter-like) region and also at the Equator, where Z observations alone have difficulty constraining winds due to lack of geostrophy. For larger ensembles (100 and 1518 members), the hybrid system results in both zonal and meridional wind error reductions, relative to 4DVar, across the globe.

  6. COMPARISON OF RECORDING CURRENT METERS USED FOR MEASURING VELOCITIES IN SHALLOW WATERS OF SAN FRANCISCO BAY, CALIFORNIA.

    USGS Publications Warehouse

    Gartner, Jeffrey W.; Oltmann, Richard N.

    1985-01-01

    The authors determine the feasibility of collecting reliable current-meter data in shallow water under natural conditions. The study involved field testing four types of recording current meters (different speed sensors) and comparing data recorded by the meters under different field conditions. Speeds recorded by the current meters at slack water and during maximum flows were compared during calm and windy conditions at various tide levels.

  7. On the transition towards slow manifold in shallow-water and 3D Euler equations in a rotating frame

    NASA Technical Reports Server (NTRS)

    Mahalov, A.

    1994-01-01

    The long-time, asymptotic state of rotating homogeneous shallow-water equations is investigated. Our analysis is based on long-time averaged rotating shallow-water equations describing interactions of large-scale, horizontal, two-dimensional motions with surface inertial-gravity waves field for a shallow, uniformly rotating fluid layer. These equations are obtained in two steps: first by introducing a Poincare/Kelvin linear propagator directly into classical shallow-water equations, then by averaging. The averaged equations describe interaction of wave fields with large-scale motions on time scales long compared to the time scale 1/f(sub o) introduced by rotation (f(sub o)/2-angular velocity of background rotation). The present analysis is similar to the one presented by Waleffe (1991) for 3D Euler equations in a rotating frame. However, since three-wave interactions in rotating shallow-water equations are forbidden, the final equations describing the asymptotic state are simplified considerably. Special emphasis is given to a new conservation law found in the asymptotic state and decoupling of the dynamics of the divergence free part of the velocity field. The possible rising of a decoupled dynamics in the asymptotic state is also investigated for homogeneous turbulence subjected to a background rotation. In our analysis we use long-time expansion, where the velocity field is decomposed into the 'slow manifold' part (the manifold which is unaffected by the linear 'rapid' effects of rotation or the inertial waves) and a formal 3D disturbance. We derive the physical space version of the long-time averaged equations and consider an invariant, basis-free derivation. This formulation can be used to generalize Waleffe's (1991) helical decomposition to viscous inhomogeneous flows (e.g. problems in cylindrical geometry with no-slip boundary conditions on the cylinder surface and homogeneous in the vertical direction).

  8. An energy and potential enstrophy conserving numerical scheme for the multi-layer shallow water equations with complete Coriolis force

    NASA Astrophysics Data System (ADS)

    Stewart, Andrew L.; Dellar, Paul J.

    2016-05-01

    We present an energy- and potential enstrophy-conserving scheme for the non-traditional shallow water equations that include the complete Coriolis force and topography. These integral conservation properties follow from material conservation of potential vorticity in the continuous shallow water equations. The latter property cannot be preserved by a discretisation on a fixed Eulerian grid, but exact conservation of a discrete energy and a discrete potential enstrophy seems to be an effective substitute that prevents any distortion of the forward and inverse cascades in quasi-two dimensional turbulence through spurious sources and sinks of energy and potential enstrophy, and also increases the robustness of the scheme against nonlinear instabilities. We exploit the existing Arakawa-Lamb scheme for the traditional shallow water equations, reformulated by Salmon as a discretisation of the Hamiltonian and Poisson bracket for this system. The non-rotating, traditional, and our non-traditional shallow water equations all share the same continuous Hamiltonian structure and Poisson bracket, provided one distinguishes between the particle velocity and the canonical momentum per unit mass. We have determined a suitable discretisation of the non-traditional canonical momentum, which includes additional coupling between the layer thickness and velocity fields, and modified the discrete kinetic energy to suppress an internal symmetric computational instability that otherwise arises for multiple layers. The resulting scheme exhibits the expected second-order convergence under spatial grid refinement. We also show that the drifts in the discrete total energy and potential enstrophy due to temporal truncation error may be reduced to machine precision under suitable refinement of the timestep using the third-order Adams-Bashforth or fourth-order Runge-Kutta integration schemes.

  9. Solution of the 2D shallow water equations using the finite volume method on unstructured triangular meshes

    NASA Astrophysics Data System (ADS)

    Anastasiou, K.; Chan, C. T.

    1997-06-01

    A 2D, depth-integrated, free surface flow solver for the shallow water equations is developed and tested. The solver is implemented on unstructured triangular meshes and the solution methodology is based upon a Godunov-type second-order upwind finite volume formulation, whereby the inviscid fluxes of the system of equations are obtained using Roes flux function. The eigensystem of the 2D shallow water equations is derived and is used for the construction of Roes matrix on an unstructured mesh. The viscous terms of the shallow water equations are computed using a finite volume formulation which is second-order-accurate. Verification of the solution technique for the inviscid form of the governing equations as well as for the full system of equations is carried out by comparing the model output with documented published results and very good agreement is obtained. A numerical experiment is also conducted in order to evaluate the performance of the solution technique as applied to linear convection problems. The presented results show that the solution technique is robust.

  10. Stability analysis of unstructured finite volume methods for linear shallow water flows using pseudospectra and singular value decomposition

    NASA Astrophysics Data System (ADS)

    Beljadid, Abdelaziz; Mohammadian, Abdolmajid; Qiblawey, Hazim

    2016-10-01

    The discretization of the shallow water system on unstructured grids can lead to spurious modes which usually can affect accuracy and/or cause stability problems. This paper introduces a new approach for stability analysis of unstructured linear finite volume schemes for linear shallow water equations with the Coriolis Effect using spectra, pseudospectra, and singular value decomposition. The discrete operator of the scheme is the principal parameter used in the analysis. It is shown that unstructured grids have a large influence on operator normality. In some cases the eigenvectors of the operator can be far from orthogonal, which leads to amplification of solutions and/or stability problems. Large amplifications of the solution can be observed, even for discrete operators which respect the condition of asymptotic stability, and in some cases even for Lax-Richtmyer stable methods. The pseudospectra are shown to be efficient for the verification of stability of finite volume methods for linear shallow water equations. In some cases, the singular value decomposition is employed for further analysis in order to provide more information about the existence of unstable modes. The results of the analysis can be helpful in choosing the type of mesh, the appropriate placements of the variables of the system on the grid, and the suitable discretization method which is stable for a wide range of modes.

  11. Acanthocephalans in northern fur seals (Callorhinus ursinus) and a harbor seal (Phoca vitulina) on St. Paul Island, Alaska: species, prevalence, and biodiversity in four fur seal subpopulations.

    PubMed

    Kuzmina, T A; Lisitsyna, O I; Lyons, E T; Spraker, T R; Tolliver, S C

    2012-09-01

    Monitoring studies of acanthocephalans in northern fur seals (Callorhinus ursinus Linnaeus, 1758) (NFSs) and a harbor seal (Phoca vitulina Linnaeus, 1758) were performed on St. Paul Island, Alaska, in July-August 2011. Gastrointestinal tracts of 105 humanely harvested NFS subadult males (SAMs) (3-4 years old) were collected during the annual Aleut subsistence harvest at four haul-out areas (HOAS): Lukanin (n = 26 NFSs), Polovina (n = 28), Gorbatch (n = 30), and Morzhovyi (n = 21). One gastrointestinal tract collected from a harbor seal (about 3-4 years old) found dead at Morzhovyi HOAS was also examined. The total prevalence of infection in NFSs with acanthocephalans was 29.52 % with variations from 7.69 % to 47.62 % between the four different HOAS. Eight acanthocephalan species of two genera-Corynosoma Lühe, 1904 (Corynosoma strumosum, Corynosoma alaskensis, Corynosoma cameroni, Corynosoma semerme, Corynosoma similis, Corynosoma validum, and Corynosoma villosum), and Bolbosoma Porta, 1908 (Bolbosoma nipponicum)-were found in the NFSs and a harbor seal. This is a new record of C. alaskensis for the NFSs. Short biological notes of the species found are presented. Differences in species composition as well as in prevalence of acanthocephalans parasitizing NFSs were observed in subpopulations from four different HOAS on St. Paul Island. The highest biodiversity of acanthocephalans and infection were found in subpopulations on Polovina and Morzhovyj HOAS, the lowest was on Lukanin HOAS. From 3.2 % (for C. validum) to 19.4 % (for C. villosum) of NFSs were infected by one acanthocephalan species; two species were found in 22.6 %; three in 9.7 %; and four in 3.2 %. Further studies of NFS parasites are necessary to follow the trends in parasitic infection rates and diversity in NFS population on the Pribilov Islands and for monitoring the influence of various ecological factors on NFS populations in Alaska.

  12. A Dynamic Eddy Viscosity Model for the Shallow Water Equations Solved by Spectral Element and Discontinuous Galerkin Methods

    NASA Astrophysics Data System (ADS)

    Marras, Simone; Suckale, Jenny; Giraldo, Francis X.; Constantinescu, Emil

    2016-04-01

    We present the solution of the viscous shallow water equations where viscosity is built as a residual-based subgrid scale model originally designed for large eddy simulation of compressible [1] and stratified flows [2]. The necessity of viscosity for a shallow water model not only finds motivation from mathematical analysis [3], but is supported by physical reasoning as can be seen by an analysis of the energetics of the solution. We simulated the flow of an idealized wave as it hits a set of obstacles. The kinetic energy spectrum of this flow shows that, although the inviscid Galerkin solutions -by spectral elements and discontinuous Galerkin [4]- preserve numerical stability in spite of the spurious oscillations in the proximity of the wave fronts, the slope of the energy cascade deviates from the theoretically expected values. We show that only a sufficiently small amount of dynamically adaptive viscosity removes the unwanted high-frequency modes while preserving the overall sharpness of the solution. In addition, it yields a physically plausible energy decay. This work is motivated by a larger interest in the application of a shallow water model to the solution of tsunami triggered coastal flows. In particular, coastal flows in regions around the world where coastal parks made of mitigation hills of different sizes and configurations are considered as a means to deviate the power of the incoming wave. References [1] M. Nazarov and J. Hoffman (2013) "Residual-based artificial viscosity for simulation of turbulent compressible flow using adaptive finite element methods" Int. J. Numer. Methods Fluids, 71:339-357 [2] S. Marras, M. Nazarov, F. X. Giraldo (2015) "Stabilized high-order Galerkin methods based on a parameter-free dynamic SGS model for LES" J. Comput. Phys. 301:77-101 [3] J. F. Gerbeau and B. Perthame (2001) "Derivation of the viscous Saint-Venant system for laminar shallow water; numerical validation" Discrete Contin. Dyn. Syst. Ser. B, 1:89?102 [4] F

  13. Tropical Cyclogenesis via Convectively Forced Vortex Rossby Waves in a Shallow Water Primitive Equation Model.

    NASA Astrophysics Data System (ADS)

    Enagonio, Janice; Montgomery, Michael T.

    2001-04-01

    This work examines further the problem of tropical cyclogenesis by convective generation of vertical vorticity within a preexisting cyclonic circulation whose initial maximum tangential wind is approximately 5 m s1. This paper validates and extends recent work examining the suggested upscale cascade mechanism in a three-dimensional quasigeostrophic framework using a simple shallow water primitive equation (SWPE) numerical model and helps clarify certain aspects of the Rossby adjustment problem on a nonresting basic state for finite-amplitude nonaxisymmetric disturbances. The SWPE approach serves as a meaningful intermediate step between the quasigeostrophic and full-physics frameworks and allows a simple investigation of the effects of unbalanced dynamics (contributions of gravity waves) and Rossby numbers of order unity.The authors compare quantitative results of the two models on the storm spinup time and magnitude. For asymmetric initial conditions whose mass and wind field are out of balance, robust spinup is still obtained provided the initial asymmetries possess a significant vortical component. Episodic convective forcing parameterized via unbalanced vorticity anomalies is shown to lead to spinup of a tropical storm strength vortex on a timescale of approximately 40 h.When the convective vorticity anomaly has a large amplitude compared to the initial 5 m s1 basic-state vortex, the convective anomaly becomes the dominant or `master vortex,' remaining essentially intact and shearing the basic-state vortex. This behavior is understood heuristically in terms of a `vortex beta Rossby number,' which provides a local measure of the strength of the nonlinear terms in the vorticity equation compared to the corresponding linear vortex Rossby wave restoring term.Additional experiments show that, if the convection in a single pulse mode occurs in multiple patches (or`subclusters') rather than in a single cluster with equal cyclonic circulation, a reduced spinup is

  14. Initial-Boundary Value Problem Solution of the Nonlinear Shallow-water Wave Equations

    NASA Astrophysics Data System (ADS)

    Kanoglu, U.; Aydin, B.

    2014-12-01

    The hodograph transformation solutions of the one-dimensional nonlinear shallow-water wave (NSW) equations are usually obtained through integral transform techniques such as Fourier-Bessel transforms. However, the original formulation of Carrier and Greenspan (1958 J Fluid Mech) and its variant Carrier et al. (2003 J Fluid Mech) involve evaluation integrals. Since elliptic integrals are highly singular as discussed in Carrier et al. (2003), this solution methodology requires either approximation of the associated integrands by smooth functions or selection of regular initial/boundary data. It should be noted that Kanoglu (2004 J Fluid Mech) partly resolves this issue by simplifying the resulting integrals in closed form. Here, the hodograph transform approach is coupled with the classical eigenfunction expansion method rather than integral transform techniques and a new analytical model for nonlinear long wave propagation over a plane beach is derived. This approach is based on the solution methodology used in Aydın & Kanoglu (2007 CMES-Comp Model Eng) for wind set-down relaxation problem. In contrast to classical initial- or boundary-value problem solutions, here, the NSW equations are formulated to yield an initial-boundary value problem (IBVP) solution. In general, initial wave profile with nonzero initial velocity distribution is assumed and the flow variables are given in the form of Fourier-Bessel series. The results reveal that the developed method allows accurate estimation of the spatial and temporal variation of the flow quantities, i.e., free-surface height and depth-averaged velocity, with much less computational effort compared to the integral transform techniques such as Carrier et al. (2003), Kanoglu (2004), Tinti & Tonini (2005 J Fluid Mech), and Kanoglu & Synolakis (2006 Phys Rev Lett). Acknowledgments: This work is funded by project ASTARTE- Assessment, STrategy And Risk Reduction for Tsunamis in Europe. Grant 603839, 7th FP (ENV.2013.6.4-3 ENV

  15. Predictability of Acoustic Propagation in Shallow Water Using Parabolic Approximation Models

    NASA Astrophysics Data System (ADS)

    Cederberg, Robert John

    Accuracy of relative intensity, interference wavelength and horizontal wavenumber predictions from parabolic approximation models of shallow water, low frequency (less than 100 Hz) acoustic propagation problems is examined. The investigation is directed toward environmental parameter values corresponding generally to those near the site of a recent New Jersey shelf experiment. First, typical parameter uncertainties in the environment of the experiment site are used to determine effects of parameter sensitivities on the accuracy of two -layer isospeed model predictions. Also, analytic expressions for rates of change of wavenumbers with respect to parameters are used to compute wavenumber and interference wavelength changes caused by parameter variations corresponding to the uncertainties. It is found that channel depth variations cause the largest change in intensity, while water sound speed variations have the greatest effect on wavenumbers. Variability of the parameter sensitivities in regions about the base parameter sets is also examined, with rates of change generally staying of the same order of magnitude throughout the regions considered. Effects of input parameter uncertainties and basic approximations in depth and range dependent PE models are also investigated. Parameter uncertainties are found to impose the greatest limitations on prediction accuracy, with sediment sound speed uncertainties causing the largest restrictions. Models of bottom sound speed profiles that take into account sediment consolidation are developed, and their effects on propagation model predictions in range dependent environments are examined. Using borehole density data and Biot-Stoll theory, a functional form for porosity in a homogeneous consolidated sediment is derived. Corresponding sound speed profiles for different sediment types are then constructed. Predictions from models consisting of consolidated sediment layers throughout the bottom are compared with results from cases

  16. Shallow water acoustic backscatter and reverberation measurements using a 68-kHz cylindrical array

    NASA Astrophysics Data System (ADS)

    Gallaudet, Timothy Cole

    2001-10-01

    The characterization of high frequency, shallow water acoustic backscatter and reverberation is important because acoustic systems are used in many scientific, commercial, and military applications. The approach taken is to use data collected by the Toroidal Volume Search Sonar (TVSS), a 68 kHz multibeam sonar capable of 360° imaging in a vertical plane perpendicular to its direction of travel. With this unique capability, acoustic backscatter imagery of the seafloor, sea surface, and horizontal and vertical planes in the volume are constructed from data obtained in 200m deep waters in the Northeastern Gulf of Mexico when the TVSS was towed 78m below the surface, 735m astern of a towship. The processed imagery provide a quasi-synoptic characterization of the spatial and temporal structure of boundary and volume acoustic backscatter and reverberation. Diffraction, element patterns, and high sidelobe levels are shown to be the most serious problems affecting cylindrical arrays such as the TVSS, and an amplitude shading method is presented for reducing the peak sidelobe levels of irregular-line and non-coplanar arrays. Errors in the towfish's attitude and motion sensor, and irregularities in the TVSS's transmitted beampattern produce artifacts in the TVSS-derived bathymetry and seafloor acoustic backscatter imagery. Correction strategies for these problems are described, which are unique in that they use environmental information extracted from both ocean boundaries. Sea surface and volume acoustic backscatter imagery are used to explore and characterize the structure of near-surface bubble clouds, schooling fish, and zooplankton. The simultaneous horizontal and vertical coverage provided by the TVSS is shown to be a primary advantage, motivating further use of multibeam sonars in these applications. Whereas boundary backscatter fluctuations are well described by Weibull, K, and Rayleigh mixture probability distributions, those corresponding to volume backscatter are

  17. Drilling of Submarine Shallow-water Hydrothermal Systems in Volcanic Arcs of the Tyrrhenian Sea, Italy

    NASA Astrophysics Data System (ADS)

    Petersen, S.; Augustin, N.; de Benedetti, A.; Esposito, A.; Gaertner, A.; Gemmell, B.; Gibson, H.; He, G.; Huegler, M.; Kleeberg, R.; Kuever, J.; Kummer, N. A.; Lackschewitz, K.; Lappe, F.; Monecke, T.; Perrin, K.; Peters, M.; Sharpe, R.; Simpson, K.; Smith, D.; Wan, B.

    2007-12-01

    presence of an anhydrite seal to a larger hydrothermal system at depth. The aim of this study is to understand the role that magmatic volatiles and phase separation play in the formation of these precious and trace element-rich shallow water (<750m) hydrothermal systems in the volcanic arcs of the Tyrrhenian Sea.

  18. Statistical equilibria of the coupled barotropic flow and shallow water flow on a rotating sphere

    NASA Astrophysics Data System (ADS)

    Ding, Xueru

    The motivation of this research is to build equilibrium statistical models that can apply to explain two enigmatic phenomena in the atmospheres of the solar system's planets: (1) the super-rotation of the atmospheres of slowly-rotating terrestrial planets---namely Venus and Titan, and (2) the persistent anticyclonic large vortex storms on the gas giants, such as the Great Red Spot (GRS) on Jupiter. My thesis is composed of two main parts: the first part focuses on the statistical equilibrium of the coupled barotropic vorticity flow (non-divergent) on a rotating sphere; the other one has to do with the divergent shallow water flow rotating sphere system. The statistical equilibria of these two systems are simulated in a wide range of parameter space by Monte Carlo methods based on recent energy-relative enstrophy theory and extended energy-relative enstrophy theory. These kind of models remove the low temperatures defect in the old classical doubly canonical energy-enstrophy theory which cannot support any phase transitions. The other big difference of our research from previous work is that we work on the coupled fluid-sphere system, which consists of a rotating high density rigid sphere, enveloped by a thin shell of fluid. The sphere is considered to have infinite mass and angular momentum; therefore, it can serve as a reservoir of angular momentum. Unlike the fluid sphere system itself, the coupled fluid sphere system allows for the exchange of angular momentum between the atmosphere and the solid planet. This exchange is the key point in any model that is expected to capture coherent structures such as the super-rotation and GRS-like vortices problems in planetary atmospheres. We discovered that slowly-rotating planets can have super-rotation at high energy state. All known slowly-rotating cases in the solar system---Venus and Titan---have super-rotation. Moreover, we showed that the anticyclonicity in the GRS-like structures is closely associated with the

  19. Instabilities of Tropical Cyclones and their Nonlinear Saturation in Moist-Convective Rotating Shallow Water Model

    NASA Astrophysics Data System (ADS)

    Lahaye, N.; Zeitlin, V.

    2015-12-01

    Studies of stability of tropical cyclones (TC) are mostly performed either in over-simplified (2D Euler, e.g. [1]), or in over-complexified "all-inclusive", e.g. [2], models. TC have very high Rossby numbers, so Lighthill radiation is operational and instabilities are radiative. Yet, the quantitative results for radiative instabilities of vortices are available only for simplified vortex profiles, e.g. [3]. TC evolve in the essentially moist and precipitating atmosphere, yet studies of precise dynamical role of moisture in developing instability are scarce [4]. We use the moist-convective Rotating Shallow Water model of [5], the simplest possible one which includes inertia-gravity gravity waves (IGW) and the effects of moisture and precipitation. Unstable modes are investigated by means of a linear stability analysis, then the nonlinear saturation is simulated in cases with precipitation off (dry), precipitation on but evaporation off (moist-precipitating), and precipitation and evaporation on (moist-precipitating-evaporating). Our main results are: Linear stability: Main instability: ageostrophic barotropic instability Unstable modes: mixed Rossby - inertia gravity waves. Dry saturation: Axisymmetrization of the TC Intensification of winds inside the radius of maximum wind Bursts in the IGW emission Moist-precipitating saturation: Amplification of the IGW emission with respect to the dry case Amplification of the wind intensification mechanism Moist-precipitating-evaporating saturation: Appearance of convectively-coupled IGWs Net intensification of wind (even at the radius of maximum wind) References: J.P. Kossin and W.H. Schubert, J. Atmos. Sci., 58, 2196, 2001. Y.C. Kwon and W.M. Frank, J. Atmos. Sci., 65, 106, 2008. S. Le Dizes and P. Billant, Phys. Fluids, 21, 1, 2009. D.A. Schecter and M.T. Montgomery, J. Atmos. Sci., 64, 314, 2007. F. Bouchut, J. Lambaerts, G. Lapeyre, and V. Zeitlin, Phys. Fluids, 21, 126601, 2009. Figure: Nondimensional vorticity (colors

  20. 78 FR 57106 - Fisheries of the Exclusive Economic Zone Off Alaska; Groundfish of the Gulf of Alaska; Amendment...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-17

    ... Economic Zone Off Alaska; Groundfish of the Gulf of Alaska; Amendment 95 to the Fishery Management Plan for... implement Amendment 95 to the Fishery Management Plan for Groundfish of the Gulf of Alaska (FMP). This proposed action would modify halibut prohibited species catch (PSC) management in the Gulf of Alaska...

  1. An investigation into mechanical strength of exoskeleton of hydrothermal vent shrimp (Rimicaris exoculata) and shallow water shrimp (Pandalus platyceros) at elevated temperatures.

    PubMed

    Verma, Devendra; Tomar, Vikas

    2015-04-01

    This investigation reports a comparison of the exoskeleton mechanical strength of deep sea shrimp species Rimicaris exoculata and shallow water shrimp species Pandalus platyceros at temperatures ranging from 25°C to 80°C using nanoindentation experiments. Scanning Electron Microscopy (SEM) observations suggest that both shrimp exoskeletons have the Bouligand structure. Differences in the structural arrangement and chemical composition of both shrimps are highlighted by SEM and EDX (Energy Dispersive X-ray) analyses. The variation in the elastic moduli with temperature is found to be correlated with the measured compositional differences. The reduced modulus of R. exoculata is 8.26±0.89GPa at 25°C that reduces to 7.61±0.65GPa at 80°C. The corresponding decrease in the reduced modulus of P. platyceros is from 27.38±2.3GPa at 25°C to 24.58±1.71GPa at 80°C. The decrease in reduced moduli as a function of temperature is found to be dependent on the extent of calcium based minerals in exoskeleton of both types of shrimp exoskeletons. PMID:25686945

  2. An investigation into mechanical strength of exoskeleton of hydrothermal vent shrimp (Rimicaris exoculata) and shallow water shrimp (Pandalus platyceros) at elevated temperatures.

    PubMed

    Verma, Devendra; Tomar, Vikas

    2015-04-01

    This investigation reports a comparison of the exoskeleton mechanical strength of deep sea shrimp species Rimicaris exoculata and shallow water shrimp species Pandalus platyceros at temperatures ranging from 25°C to 80°C using nanoindentation experiments. Scanning Electron Microscopy (SEM) observations suggest that both shrimp exoskeletons have the Bouligand structure. Differences in the structural arrangement and chemical composition of both shrimps are highlighted by SEM and EDX (Energy Dispersive X-ray) analyses. The variation in the elastic moduli with temperature is found to be correlated with the measured compositional differences. The reduced modulus of R. exoculata is 8.26±0.89GPa at 25°C that reduces to 7.61±0.65GPa at 80°C. The corresponding decrease in the reduced modulus of P. platyceros is from 27.38±2.3GPa at 25°C to 24.58±1.71GPa at 80°C. The decrease in reduced moduli as a function of temperature is found to be dependent on the extent of calcium based minerals in exoskeleton of both types of shrimp exoskeletons.

  3. Tsunami Inundation Mapping of Coastal Alaska

    NASA Astrophysics Data System (ADS)

    Suleimani, E.; Hansen, R.; Marriott, D.; Combellick, R.

    2004-05-01

    Seismic events that occur within the Alaska-Aleutian subduction zone have a high potential for generating both local and Pacific-wide tsunamis. To help mitigate the large risk these earthquakes and tsunamis pose to Alaskan coastal communities, the Alaska Tsunami Modeling Team addresses the problem of predicting runup of tsunami waves using a numerical modeling technique. The model solves nonlinear shallow-water equations with a finite-difference method. Embedded grids of different resolution are employed to increase spatial resolution in the shelf area. Numerical simulations yield runup heights, extent of maximum inundation for chosen tsunami scenarios, depths of inundation on dry land, and maximum velocity current distribution in inundation zones. The communities for inundation mapping are selected in coordination with the Alaska Division of Emergency Services with consideration to location, infrastructure, availability of bathymetric and topographic data, and community involvement.The communities of Homer and Seldovia are located in Kachemak Bay, which is one of the high-priority region for Alaska inundation mapping. We modeled two hypothetical earthquake scenarios as potential sources of tsunami waves that affect the Kachemak Bay communities. They represent both distant and local sources, and we model them using the multiple fault approach. Seward, a community in the Prince William Sound area, suffered an extensive damage and 12 fatalities during the 1964 tsunami. The most destructive waves in Seward were local slump-generated tsunamis. We consider several tsunami scenarios for Seward inundation mapping that include both tectonic and landslide sources.

  4. Spatial and temporal diversity of microbial mats in the shallow-water hydrothermal system of Milos Island (Greece)

    NASA Astrophysics Data System (ADS)

    Giovannelli, D.; Foustoukos, D.; Le Bris, N.; Sievert, S. M.; Yucel, M.; Vetriani, C.

    2014-12-01

    Shallow-water hydrothermal vents are ubiquitous but poorly studied geothermal environments. The shallow-water hydrothermal system of Milos Island is a unique study site with vents exhibiting steep geothermal gradients in the presence of light that allows the co-occurrence of photosynthesis and chemosynthesis. The active hydrothermal emissions of the Milos hydrothermal system support complex microbial mats, which are fundamental in engineering the environmental niche in which extremophiles thrive. Because of the shallow depth, the mat community is wiped out during every major storm, when swell and wave action increase, and then it reconstitutes itself over a brief period of time (days). While most studies are focused on the diversity of the community residing in the underlying sediments, little information is available on the diversity and functioning of the mat community, and how it responds to abrupt geodynamic events. Here we report the results of a joint geochemical and microbiological survey of the microbial mats of Milos island, and analyze the spatial and temporal evolution of the mat community following a major storm. Our results show that the community is dominated by Epsilonproteobacteria, although significant variability is present within the systemm. The observed variability correlates with spatial profiles and in situ measurement of temperature and sulfide carried out over a 6 days periods, showing that tides, winds, and abrupt geodynamic events generate intermittent mixing conditions lasting for several hours to days. Diversity and metagenomic analyses of the mature mat provide further information on the metabolic potential of the community and on the influence of environmental factors on ecosystem functioning. Our work lays the basis for studies aimed at resolving the spatial and temporal dynamics of chemoautotrophic microbial communities in shallow-water hydrothermal systems.

  5. New wave-solutions of the shallow water equations over a sphere and their application to global scale models

    NASA Astrophysics Data System (ADS)

    paldor, nathan

    2014-05-01

    Recent theoretical advances have yielded explicit expressions of zonally propagating wave solutions of the Shallow Water Equations over a sphere. These newly found wave solutions are accurately approximated by Hermite Functions in baroclinic modes and by Gegenbauer Functions (i.e. Gegenbauer polynomials multiplied by some high power of cosine(latitude)) in barotropic modes. The theory also yields highly accurate explicit expressions for the dispersion relations of these waves. A natural application of these theoretical advances is the construction of new bases for spectral global scale general circulation models. Preliminary results from this application demonstrate that when a model is initialized by an exact wave solution the Hermite based Shallow Water solver reproduces the exact solution for 100 days with no noticeable error in either the phase speed or the amplitude while with the Spherical Harmonics based solver the exact wave solution was completely destroyed within 4 days. On close examination of the numerical calculations one can detect the generation of errors near the poles followed by their growth and propagation to lower latitudes where they modify the initial signal appreciably. Our results suggest that although Spherical harmonics are the eigenfunctions of the Laplacian in spherical coordinates they are not the most fitting basis for solving the Shallow Water equations on a rotating sphere. Another future application of the theoretical advances is the construction of test cases that will allow a quantitative comparison between the performance (e.g. accuracy, convergence, speed, etc.) of various global scale General Circulation Models. Towards this, the new spectral solvers have to be extended to include nonlinear terms, various types of forcing and dissipation while currently the solver is limited to linear dynamics only.

  6. A unified formulation for the three-dimensional shallow water equations using orthogonal co-ordinates: theory and application

    NASA Astrophysics Data System (ADS)

    Kernkamp, Herman W. J.; Petit, Henri A. H.; Gerritsen, Herman; de Goede, Erik D.

    2005-12-01

    In this paper, the formulations of the primitive equations for shallow water flow in various horizontal co-ordinate systems and the associated finite difference grid options used in shallow water flow modelling are reviewed. It is observed that horizontal co-ordinate transformations do not affect the chosen co-ordinate system and representation in the vertical, and are the same for the three- and two-dimensional cases. A systematic derivation of the equations in tensor notation is presented, resulting in a unified formulation for the shallow water equations that covers all orthogonal horizontal grid types of practical interest. This includes spherical curvilinear orthogonal co-ordinate systems on the globe. Computational efficiency can be achieved in a single computer code. Furthermore, a single numerical algorithmic code implementation satisfies. All co-ordinate system specific metrics are determined as part of a computer-aided model grid design, which supports all four orthogonal grid types. Existing intuitive grid design and visual interpretation is conserved by appropriate conformal mappings, which conserve spherical orthogonality in planar representation. A spherical curvilinear co-ordinate solution of wind driven steady channel flow applying a strongly distorted grid is shown to give good agreement with a regular spherical co-ordinate model approach and the solution based on a β-plane approximation. Especially designed spherical curvilinear boundary fitted model grids are shown for typhoon surge propagation in the South China Sea and for ocean-driven flows through Malacca Straits. By using spherical curvilinear grids the number of grid points in these single model grid applications is reduced by a factor of 50-100 in comparison with regular spherical grids that have the same horizontal resolution in the area of interest. The spherical curvilinear approach combines the advantages of the various grid approaches, while the overall computational effort remains

  7. Study on shallow-water delta characteristics by utilizing seismic sedimentologic methods in Zilaitun Oilfield, Huanghua Depression, East China

    NASA Astrophysics Data System (ADS)

    Liu, Shan; Wang, Jiahao

    2015-04-01

    Shallow-water delta is characterized by widely distributed distributary channels from plentiful previous studies. But how to tenuously depict its planar geomorphology remains a difficult problem at present. This paper discussed the feasibility of seismic sedimentologic methods to interpret distributary channels distribution and summarized shallow-water delta characteristics. Huanghua Depression of Bohai Bay Basin is the Cenozoic rift basin in east China. Zilaitun Oilfield lies in the Kongdian buried-hill belt of Huanghua Depression. The oil layer is mainly distributed in the Paleocene Kongdian Formation. From core samples, 1st member of Kongdian Formation mainly consists of finer grain-size sandstone and amaranth mudstone, revealing a shallow-water environment. In the sandstone of distributary channels, sedimentary structures such as erosional surface, lag deposit, parallel bedding and trough cross-bedding are developed, illustrating an intensive hydrodynamic condition. Combining logging data, shallow-water delta mainly developed delta front subfacies. Microfacies of the delta front include subaqueous distributary channel, mouth bar and interdistributary bay in study area. A vertical discontinuous sequence was formed on account of the lack of distal bar. Subaqueous distributary channels are characterized by cylinder and conical well log curves. By extraction of RMS amplitudes from 3-D seismic data, seismic strata slices reveal banding distribution of sand bodies. Cylinder and conical logging curves demonstrated that these sand bodies are developed in distributary channels. The NE-trending anastomosing and dendritic distributary channels are widely developed in 1st member of Kongdian Formation. When the lake expanded, the river frequently bifurcated and diverted due to the rise of the relative lake-level, forming deep and wide anastomosing distributary channels. These channels extended as far as 13.2 km. The width is from 600 m to 1000 m. The average thickness of

  8. Development of a Finite-Difference Time Domain (FDTD) Model for Propagation of Transient Sounds in Very Shallow Water.

    PubMed

    Sprague, Mark W; Luczkovich, Joseph J

    2016-01-01

    This finite-difference time domain (FDTD) model for sound propagation in very shallow water uses pressure and velocity grids with both 3-dimensional Cartesian and 2-dimensional cylindrical implementations. Parameters, including water and sediment properties, can vary in each dimension. Steady-state and transient signals from discrete and distributed sources, such as the surface of a vibrating pile, can be used. The cylindrical implementation uses less computation but requires axial symmetry. The Cartesian implementation allows asymmetry. FDTD calculations compare well with those of a split-step parabolic equation. Applications include modeling the propagation of individual fish sounds, fish aggregation sounds, and distributed sources.

  9. Energy invariant for shallow-water waves and the Korteweg-de Vries equation: Doubts about the invariance of energy.

    PubMed

    Karczewska, Anna; Rozmej, Piotr; Infeld, Eryk

    2015-11-01

    It is well known that the Korteweg-de Vries (KdV) equation has an infinite set of conserved quantities. The first three are often considered to represent mass, momentum, and energy. Here we try to answer the question of how this comes about and also how these KdV quantities relate to those of the Euler shallow-water equations. Here Luke's Lagrangian is helpful. We also consider higher-order extensions of KdV. Though in general not integrable, in some sense they are almost so within the accuracy of the expansion. PMID:26651809

  10. Solving the shallow water equations on the Cray X-MP/48 and the connection machine 2

    NASA Technical Reports Server (NTRS)

    Swarztrauber, Paul N.; Sato, Richard K.

    1989-01-01

    The shallow water equations in Cartesian coordinates and 2-D are solved on the Connection Machine 2 (CM-2) using both the spectral and finite difference methods. A description of these implementations is presented together with a brief discussion of the CM-2 as it relates to these specific computations. The finite difference code was written both in C* and *LISP and the spectral code was written in *LISP. The performance of the codes is compared with a FORTRAN version that was optimized for the Cray X-MP/48.

  11. UNIT, ALASKA.

    ERIC Educational Resources Information Center

    Louisiana Arts and Science Center, Baton Rouge.

    THE UNIT DESCRIBED IN THIS BOOKLET DEALS WITH THE GEOGRAPHY OF ALASKA. THE UNIT IS PRESENTED IN OUTLINE FORM. THE FIRST SECTION DEALS PRINCIPALLY WITH THE PHYSICAL GEOGRAPHY OF ALASKA. DISCUSSED ARE (1) THE SIZE, (2) THE MAJOR LAND REGIONS, (3) THE MOUNTAINS, VOLCANOES, GLACIERS, AND RIVERS, (4) THE NATURAL RESOURCES, AND (5) THE CLIMATE. THE…

  12. Detection of viruses and virus-like particles in four species of wild and farmed bivalve molluscs in Alaska, U.S.A., from 1987 to 2009.

    PubMed

    Meyers, Theodore R; Burton, Tamara; Evans, Wally; Starkey, Norman

    2009-12-22

    The U.S. Alaska Department of Fish and Game has regulatory oversight of the mariculture industry that is partially administered through a statewide shellfish health policy. Possession and transport of bivalve molluscs require development of indigenous pathogen histories from diagnostic examinations of wild and farmed populations. These examinations have resulted in the detection of various infectious agents and parasites including viruses: an aquareovirus and aquabirna-like virus isolated by fish cell culture, and papilloma- or polyoma- and herpes-like virus particles within bivalve cell intranuclear inclusion bodies observed by electron microscopy. This study summarizes these results in samples examined from 1987 to 2009 and is the first description of poikilothermic viruses from Alaskan waters isolated from or observed within the tissues of 4 species of bivalve molluscs: geoduck clam Panope abrupta, native littleneck clam Protothaca staminea, purple-hinged rock scallop Crassadoma gigantea and Pacific oyster Crassostrea gigas.

  13. Detection of viruses and virus-like particles in four species of wild and farmed bivalve molluscs in Alaska, U.S.A., from 1987 to 2009.

    PubMed

    Meyers, Theodore R; Burton, Tamara; Evans, Wally; Starkey, Norman

    2009-12-22

    The U.S. Alaska Department of Fish and Game has regulatory oversight of the mariculture industry that is partially administered through a statewide shellfish health policy. Possession and transport of bivalve molluscs require development of indigenous pathogen histories from diagnostic examinations of wild and farmed populations. These examinations have resulted in the detection of various infectious agents and parasites including viruses: an aquareovirus and aquabirna-like virus isolated by fish cell culture, and papilloma- or polyoma- and herpes-like virus particles within bivalve cell intranuclear inclusion bodies observed by electron microscopy. This study summarizes these results in samples examined from 1987 to 2009 and is the first description of poikilothermic viruses from Alaskan waters isolated from or observed within the tissues of 4 species of bivalve molluscs: geoduck clam Panope abrupta, native littleneck clam Protothaca staminea, purple-hinged rock scallop Crassadoma gigantea and Pacific oyster Crassostrea gigas. PMID:20183960

  14. New glass sponges (Porifera: Hexactinellida) from deep waters of the central Aleutian Islands, Alaska.

    PubMed

    Reiswig, Henry M; Stone, Robert P

    2013-01-01

    Hexactinellida from deep-water communities of the central Aleutian Islands, Alaska, are described. They were mostly collected by the remotely operated vehicle 'Jason II' from 494–2311 m depths during a 2004 RV 'Roger Revelle' expedition, but one shallow-water species collected with a shrimp trawl from 155 m in the same area is included. The excellent condition of the ROV-collected specimens enabled valuable redescription of some species previously known only from badly damaged specimens. New taxa include one new genus and eight new species in five families. Farreidae consist of two new species, Farrea aleutiana and F. aspondyla. Euretidae consists of only Pinulasma fistulosum n. gen., n. sp. Tretodictyidae include only Tretodictyum amchitkensis n. sp. Euplectellidae consists of only the widespread species Regadrella okinoseana Ijima, reported here over 3,700 km from its closest previously known occurrence. The most diverse family, Rossellidae, consists of Aulosaccus ijimai (Schulze), Aulosaccus schulzei Ijima, Bathydorus sp. (young stage not determinable to species), Caulophacus (Caulophacus) adakensis n. sp., Acanthascus koltuni n. sp., Staurocalyptus psilosus n. sp., Staurocalyptus tylotus n. sp. and Rhabdocalyptus mirabilis Schulze. We present argument for reinstatement of the abolished rossellid subfamily Acanthascinae and return of the subgenera  Staurocalyptus Ijima and Rhabdocalyptus Schulze to their previous generic status. These fauna provides important complexity to the hard substrate communities that likely serve as nursery areas for the young stages of commercially important fish and crab species, refuge from predation for both young and adult stages, and also as a focal source of prey for juvenile and adult stages of those same species. PMID:25325089

  15. New glass sponges (Porifera: Hexactinellida) from deep waters of the central Aleutian Islands, Alaska.

    PubMed

    Reiswig, Henry M; Stone, Robert P

    2013-01-01

    Hexactinellida from deep-water communities of the central Aleutian Islands, Alaska, are described. They were mostly collected by the remotely operated vehicle 'Jason II' from 494–2311 m depths during a 2004 RV 'Roger Revelle' expedition, but one shallow-water species collected with a shrimp trawl from 155 m in the same area is included. The excellent condition of the ROV-collected specimens enabled valuable redescription of some species previously known only from badly damaged specimens. New taxa include one new genus and eight new species in five families. Farreidae consist of two new species, Farrea aleutiana and F. aspondyla. Euretidae consists of only Pinulasma fistulosum n. gen., n. sp. Tretodictyidae include only Tretodictyum amchitkensis n. sp. Euplectellidae consists of only the widespread species Regadrella okinoseana Ijima, reported here over 3,700 km from its closest previously known occurrence. The most diverse family, Rossellidae, consists of Aulosaccus ijimai (Schulze), Aulosaccus schulzei Ijima, Bathydorus sp. (young stage not determinable to species), Caulophacus (Caulophacus) adakensis n. sp., Acanthascus koltuni n. sp., Staurocalyptus psilosus n. sp., Staurocalyptus tylotus n. sp. and Rhabdocalyptus mirabilis Schulze. We present argument for reinstatement of the abolished rossellid subfamily Acanthascinae and return of the subgenera  Staurocalyptus Ijima and Rhabdocalyptus Schulze to their previous generic status. These fauna provides important complexity to the hard substrate communities that likely serve as nursery areas for the young stages of commercially important fish and crab species, refuge from predation for both young and adult stages, and also as a focal source of prey for juvenile and adult stages of those same species.

  16. The Multitentaculate Cirratulidae of the Genera Cirriformia and Timarete (Annelida: Polychaeta) from Shallow Waters of Brazil

    PubMed Central

    Magalhães, Wagner F.; Seixas, Victor Corrêa; Paiva, Paulo Cesar; Elias, Rodolfo

    2014-01-01

    A large number multitentaculate cirratulids have been described worldwide but most are only known through the original descriptions. Type material, voucher and recently collected specimens from Brazil were revisited in order to reveal their true identity and confirm the records of widely distributed species in this region. Six species are described, three of which are new, Cirriformia capixabensis sp. nov., Cirriformia chicoi sp. nov. and Timarete ceciliae sp. nov. COI and 16S sequences were obtained and used for inter-specific comparisons. Timarete caribous is reported from several localities along the Brazilian coast and a new synonym, Cirratulus melanacanthus, is proposed. The species Timarete oculata, originally described from Brazil and lumped into the Timarete filigera species complex, is herein revalidated and redescribed. The occurrence of the species Timarete filigera and Cirriformia tentaculata is not confirmed from the Brazilian coast. Descriptions, illustrations and a key to genera and species are provided. PMID:25393759

  17. Biannual otolith-zone formation of young shallow-water hake Merluccius capensis in the northern Benguela: age verification using otoliths sampled by a top predator.

    PubMed

    Wilhelm, M R; Roux, J-P; Moloney, C L; Jarre, A

    2015-07-01

    Otoliths collected at least monthly from scat samples of Cape fur seals Arctocephalus pusillus are used to show that shallow-water hake Merluccius capensis from the northern Benguela develop three translucent zones in their first 1·5 years of life. The novel sampling approach provided otoliths that belonged to four M. capensis cohorts of approximate known age (hatched in 1996, 1998, 2002 and 2005), allowing age verification. Following spawning in austral winter, translucent zones consistently formed first in summer and autumn (T1), then in winter and spring (T2) and again in summer and autumn (T3), with no difference in appearance of the zones (biannuli) for the four cohorts considered. The second translucent zone is usually the first true annulus (year mark). It forms during July to September in fish of 15-20 cm total length (LT ). Formation of the translucent zones appears to be determined by fish length or age, rather than by exogenous cues. It is suggested that length measurements should be used to help determine the first age group; fish with a translucent zone marked at otolith lengths >7·5 mm should be termed 1 year-old fish. Ages of M. capensis used in previous stock assessment models have been overestimated. Biannuli are an unusual occurrence in fish otoliths in general, but have been observed in other Merluccius species. PMID:25990746

  18. Restoration of the contact surface in FORCE-type centred schemes I: Homogeneous two-dimensional shallow water equations

    NASA Astrophysics Data System (ADS)

    Canestrelli, Alberto; Toro, Eleuterio F.

    2012-10-01

    Recently, the FORCE centred scheme for conservative hyperbolic multi-dimensional systems has been introduced in [34] and has been applied to Euler and relativistic MHD equations, solved on unstructured meshes. In this work we propose a modification of the FORCE scheme, named FORCE-Contact, that provides improved resolution of contact and shear waves. This paper presents the technique in full detail as applied to the two-dimensional homogeneous shallow water equations. The improvements due to the new method are particularly evident when an additional equation is solved for a tracer, since the modified scheme exactly resolves isolated and steady contact discontinuities. The improvement is considerable also for slowly moving contact discontinuities, for shear waves and for steady states in meandering channels. For these types of flow fields, the numerical results provided by the new FORCE-Contact scheme are comparable with, and sometimes better than, the results obtained from upwind schemes, such as Roes scheme for example. In a companion paper, a similar approach to restoring the missing contact wave and preserving well-balanced properties for non-conservative one- and two-layer shallow water equations is introduced. However, the procedure is general and it is in principle applicable to other multidimensional hyperbolic systems in conservative and non-conservative form, such as the Euler equations for compressible gas dynamics.

  19. Using the Chombo Adaptive Mesh Refinement Model in Shallow Water Mode to Simulate Interactions of Tropical Cyclone-like Vortices

    NASA Astrophysics Data System (ADS)

    Ferguson, J. O.; Jablonowski, C.; Johansen, H.; McCorquodale, P.; Ullrich, P. A.

    2015-12-01

    Complex multi-scale atmospheric phenomena such as tropical cyclones challenge the coarse uniform grids of convectional climate models. Adaptive mesh refinement (AMR) techniques seek to mitigate these problems by providing sufficiently high-resolution grid patches only over features of interests while limiting the computational burden of requiring such resolutions globally. One such model is the non-hydrostatic, finite-volume Chombo-AMR general circulation model (GCM), which implements refinement in both space and time on a cubed-sphere grid. The 2D shallow-water equations exhibit many of the complexities of 3D GCM dynamical cores and serve as an effective method for testing the dynamical core and the refinement strategies of adaptive atmospheric models. We implement a shallow-water test case consisting of a pair of interacting tropical cyclone-like vortices. Small changes in the initial conditions can lead to a variety of interactions that develop fine-scale spiral band structures and large-scale wave trains. We investigate the accuracy and efficiency of AMR's ability to capture and effectively follow the evolution of the vortices in time. These simulations serve to test the effectiveness of refinement for both static and dynamic grid configurations as well as the sensitivity of the model results to the refinement criteria.

  20. Observations of shallow water marine ambient sound: the low frequency underwater soundscape of the central Oregon coast.

    PubMed

    Haxel, Joseph H; Dziak, Robert P; Matsumoto, Haru

    2013-05-01

    A year-long experiment (March 2010 to April 2011) measuring ambient sound at a shallow water site (50 m) on the central OR coast near the Port of Newport provides important baseline information for comparisons with future measurements associated with resource development along the inner continental shelf of the Pacific Northwest. Ambient levels in frequencies affected by surf-generated noise (f < 100 Hz) characterize the site as a high-energy end member within the spectrum of shallow water coastal areas influenced by breaking waves. Dominant sound sources include locally generated ship noise (66% of total hours contain local ship noise), breaking surf, wind induced wave breaking and baleen whale vocalizations. Additionally, an increase in spectral levels for frequencies ranging from 35 to 100 Hz is attributed to noise radiated from distant commercial ship commerce. One-second root mean square (rms) sound pressure level (SPLrms) estimates calculated across the 10-840 Hz frequency band for the entire year long deployment show minimum, mean, and maximum values of 84 dB, 101 dB, and 152 dB re 1 μPa.

  1. Application of Airborne Hydrographic Laser Scanning for Mapping Shallow Water Riverine Environments in the Pacific Northwest, United States

    NASA Astrophysics Data System (ADS)

    Cooper, C.; Nayegandhi, A.; Faux, R.

    2013-12-01

    Small-footprint, green wavelength airborne LiDAR systems can provide seamless topography across the land-water interface at very high spatial resolution. These data have the potential to improve floodplain modeling, fisheries habitat assessments, stream restoration efforts, and other applications by continuously mapping shallow water depths that are difficult or impossible to measure using traditional ground-based or water-borne survey techniques. WSI (Corvallis, Oregon) in collaboration with Dewberry, (Tampa, Florida) and Riegl (Orlando, Florida), deployed the Riegl VQ-820-G hydrographic airborne laser scanner to map riverine and lacustrine environments from Oregon to Minnesota. Discussion will focus on the ability to accurately map depth and underwater structure, as well as riparian vegetation and terrain under different conditions. Results indicate that depth penetration varies with both water (i.e. clarity and surface conditions) and bottom conditions (i.e. substrate, depth, and landform). Depth penetration was typically limited to 1 Secchi depth or less across selected project areas. As an example, the green LiDAR system effectively mapped 83% of a shallow water river system, the Sandy River, with typical depths ranging from 0-2.5 meters. WSI will show quantitative comparisons of Green LiDAR surveys against more traditional methods such as rod or sonar surveys. WSI will also discuss advantages and limitations of Green LiDAR surveys for bathymetric modeling including survey accuracy, density, and efficiency along with data processing challenges not inherent with traditional NIR LiDAR processing.

  2. Pumping strategies for management of a shallow water table: The value of the simulation-optimization approach

    USGS Publications Warehouse

    Barlow, P.M.; Wagner, B.J.; Belitz, K.

    1996-01-01

    The simulation-optimization approach is used to identify ground-water pumping strategies for control of the shallow water table in the western San Joaquin Valley, California, where shallow ground water threatens continued agricultural productivity. The approach combines the use of ground-water flow simulation with optimization techniques to build on and refine pumping strategies identified in previous research that used flow simulation alone. Use of the combined simulation-optimization model resulted in a 20 percent reduction in the area subject to a shallow water table over that identified by use of the simulation model alone. The simulation-optimization model identifies increasingly more effective pumping strategies for control of the water table as the complexity of the problem increases; that is, as the number of subareas in which pumping is to be managed increases, the simulation-optimization model is better able to discriminate areally among subareas to determine optimal pumping locations. The simulation-optimization approach provides an improved understanding of controls on the ground-water flow system and management alternatives that can be implemented in the valley. In particular, results of the simulation-optimization model indicate that optimal pumping strategies are constrained by the existing distribution of wells between the semiconfined and confined zones of the aquifer, by the distribution of sediment types (and associated hydraulic conductivities) in the western valley, and by the historical distribution of pumping throughout the western valley.

  3. An efficient exponential time integration method for the numerical solution of the shallow water equations on the sphere

    NASA Astrophysics Data System (ADS)

    Gaudreault, Stéphane; Pudykiewicz, Janusz A.

    2016-10-01

    The exponential propagation methods were applied in the past for accurate integration of the shallow water equations on the sphere. Despite obvious advantages related to the exact solution of the linear part of the system, their use for the solution of practical problems in geophysics has been limited because efficiency of the traditional algorithm for evaluating the exponential of Jacobian matrix is inadequate. In order to circumvent this limitation, we modify the existing scheme by using the Incomplete Orthogonalization Method instead of the Arnoldi iteration. We also propose a simple strategy to determine the initial size of the Krylov space using information from previous time instants. This strategy is ideally suited for the integration of fluid equations where the structure of the system Jacobian does not change rapidly between the subsequent time steps. A series of standard numerical tests performed with the shallow water model on a geodesic icosahedral grid shows that the new scheme achieves efficiency comparable to the semi-implicit methods. This fact, combined with the accuracy and the mass conservation of the exponential propagation scheme, makes the presented method a good candidate for solving many practical problems, including numerical weather prediction.

  4. High frequency normal mode statistics in a shallow water waveguide: the effect of random linear internal waves.

    PubMed

    Raghukumar, Kaustubha; Colosi, John A

    2014-07-01

    Using transport theory and Monte Carlo numerical simulation, the statistical properties of mode propagation at a frequency of 1 kHz are studied in a shallow water environment with random sound-speed perturbations from linear internal waves. The environment is typical of summer conditions in the mid-Atlantic bight during the Shallow Water 2006 experiment. Observables of interest include the second and fourth moments of the mode amplitudes, which are relevant to full-field mean intensity and scintillation index. It is found that mode phase randomization has a strong adiabatic component while at the same time mode coupling rates are significant. As a consequence, a computationally efficient transport theory is presented, which models cross-mode correlation adiabatically, but accounts for mode coupling using the mode energy equations of Creamer [(1996). J. Acoust. Soc. Am. 99, 2825-2838]. The theory also has closed-form expressions for the internal wave scattering matrix and a correction for an edge effect. The hybrid transport theory is shown to accurately reproduce many statistical quantities from the Monte Carlo simulations.

  5. Evaluation of the heat flux on the bottom boundary in shallow waters

    NASA Astrophysics Data System (ADS)

    Debolskaya, Elena; Ivanov, Alexandre

    2014-05-01

    is so small compared to the turbulent one) at different wind velocities W , will in any case not too low values of depths where the influence of the upper boundary condition is essential. It is easy to calculate that the effect of diurnal variations of temperature at the upper boundary depends on the wind velocity as follows: at W=0.5m/s K0=10-5m2/s, H=1.6 m; at W=1 m/s K0=2.6•10-4 m2/s, H=5m; at W=5 m/s K0=3•10-3 m2/s, H=16m. Further we can estimate the ability of the soil to respond to water temperature changes and to effect on the heat content of the overlying column of fluid, i.e., to serve as a source of stored heat. We consider a set of factors, that support such accumulation, namely, the shallow water with strong winds and calculate the relation of the temperature on the surface of the reservoir with depth H = 0.5 m and on the bottom during the daily fluctuation of temperature and upon the action of the wind with velocity of W = 5m / s. We obtain T(H,t)=0.95 T0, i.e. almost the whole water column warmed uniformly. Let us consider now the soil layer, on the surface of which there is a periodic variation of temperature of the overlying water with amplitude T(H,t)=0.95 T0. This problem is also described by the one-dimensional heat conduction equation with periodic boundary conditions at the upper boundary. The coefficient of thermal diffusivity of the soil at least one order of magnitude less than that of water. Let us find the value of soil depth (distance from the boundary "bottom -water"), where decrease in the amplitude of heat exposure is 10 times at daily fluctuations. We use the expression obtained above for water column and at the value of thermal diffusivity 10-7 m2/s and daily temperature variations with 86400 s, we obtain H = 0.12m. Below this depth the temperature remains relatively constant and heat flux is absent. Thus, the daily fluctuations of temperature, even for very small and well-mixed reservoir, can not propagate in depth of sediments to

  6. A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymenophorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls

    PubMed Central

    Schuster, Lukas; Bright, Monika

    2016-01-01

    Symbioses between ciliate hosts and prokaryote or unicellular eukaryote symbionts are widespread. Here, we report on a novel ciliate species within the genus Zoothamnium Bory de St. Vincent, 1824, isolated from shallow-water sunken wood in the North Adriatic Sea (Mediterranean Sea), proposed as Zoothamnium ignavum sp. nov. We found this ciliate species to be associated with a novel genus of bacteria, here proposed as “Candidatus Navis piranensis” gen. nov., sp. nov. The descriptions of host and symbiont species are based on morphological and ultrastructural studies, the SSU rRNA sequences, and in situ hybridization with symbiont-specific probes. The host is characterized by alternate microzooids on alternate branches arising from a long, common stalk with an adhesive disc. Three different types of zooids are present: microzooids with a bulgy oral side, roundish to ellipsoid macrozooids, and terminal zooids ellipsoid when dividing or bulgy when undividing. The oral ciliature of the microzooids runs 1¼ turns in a clockwise direction around the peristomial disc when viewed from inside the cell and runs into the infundibulum, where it makes another ¾ turn. The ciliature consists of a paroral membrane (haplokinety), three adoral membranelles (polykineties), and one stomatogenic kinety (germinal kinety). One circular row of barren kinetosomes is present aborally (trochal band). Phylogenetic analyses placed Z. ignavum sp. nov. within the clade II of the polyphyletic family Zoothamniidae (Oligohymenophorea). The ectosymbiont was found to occur in two different morphotypes, as rods with pointed ends and coccoid rods. It forms a monophyletic group with two uncultured Gammaproteobacteria within an unclassified group of Gammaproteobacteria, and is only distantly related to the ectosymbiont of the closely related peritrich Z. niveum (Hemprich and Ehrenberg, 1831) Ehrenberg, 1838. PMID:27683199

  7. Diagnostic foraminiferal assemblages of Florida Bay and adjacent shallow waters: a comparison

    USGS Publications Warehouse

    Lidz, B.H.; Rose, P.R.

    1989-01-01

    Ecologic studies of benthic Foraminifera in Florida Bay indicate that 1) the bay is a specialized restricted platform interior environment; 2) its fauna is divisible into 3 subfaunas: nearshore, mudbank, and "lake', 3) substrate, currents, wave intensity, and wave direction affect local distribution but do not alter regional patterns; and 4) faunal assemblages rather than individual species of Foraminifera are diagnostic environmental indicators as many species range over several faunal zones. -from Authors

  8. AIRS Remote Sensing of Ammonia Species Preceding the Alaska Fire of 2004 Compared to Ground Monitoring in New York City

    NASA Astrophysics Data System (ADS)

    Padilla, D.; Steiner, J.; Menzel, P.

    2008-05-01

    Ammonia and ammonium sulfate are common industrial and agricultural byproducts. A widespread pollution event recorded by the Environmental Protection Agency July 2004 in the northeastern United States was overprinted and replaced in New York City by a down-trending of a smoke-laden aerosol tracked from the 2004 Alaska fire. Background subtraction of the absorption bands for ammonia (A) using the AIRS band at 966 cm-1 identifies a possible ammonia-rich plume that followed a westerly transect from the Midwest to New York City. The transition from ammonium sulfate (AS)-dominated to organic-derived carbon is documented at CCNY/NYC using x-ray diffraction (XRD) analysis of ribbons from an Environmental Beta Attenuation Monitor. XRD peaks are consistent with crystalline PM2.5 AS increasing dramatically over the interval July 17-21, being replaced by smoke particulates on July 22. Scanning electron microscope and energy dispersive analysis (SEM/EDS) of the smoke particulates show significant potassium and calcium enrichment in the complex ash, as do analysis of fractions of the ribbon analyzed by induced coupled plasma emission (ICP). This conforms to laboratory investigation of the byproducts of the combustion of pine and fir that show similar K- and Ca-enrichment. The laboratory data and the AIRS remote sensing measurements are combined with the MODIS Aerosol Optical Depth product to develop a method for monitoring industrial and agricultural ammonia-concentrated air masses for climate modeling.

  9. Biomarkers of PAH exposure in an intertidal fish species from Prince William Sound, Alaska: 2004-2005.

    PubMed

    Huggett, Robert J; Neff, Jerry M; Stegeman, John J; Woodin, Bruce; Parker, Keith R; Brown, John S

    2006-10-15

    Polycyclic aromatic hydrocarbon (PAH) exposure biomarkers were measured in high cockscomb prickleback (Anoplarchus purpurescens) fish collected from both previously oiled and unoiled shore in Prince William Sound (PWS), Alaska, to test the hypothesis that fish living in the nearshore environment of the sound were no longer being exposed to PAH from the Exxon Valdez oil spill. Pricklebacks spend their entire lives in the intertidal zone of rocky shores with short-term movements during feeding and breeding restricted to an area of about 15 meters in diameter. Fish were assayed for the PAH exposure biomarkers, bile fluorescent aromatic compounds (FAC), and liver ethoxyresorufin O-deethylase (EROD) activity (a measure of cytochrome P450 1A (CYP1A) monooxygenase activity). Bile FAC concentrations and EROD activities were low and not significantly different in fish from previously oiled and unoiled sites. The similar low EROD activity and bile FAC concentrations in fish from oiled and unoiled shores, supports the hypothesis that these low-level biomarker responses were not caused by exposure of the fish to residues of the spilled oil. PMID:17120588

  10. Effects of 1997-1998 El Niño on the dynamics of the shallow-water fish assemblage of the Patos Lagoon Estuary (Brazil)

    NASA Astrophysics Data System (ADS)

    Garcia, A. M.; Vieira, J. P.; Winemiller, K. O.

    2003-06-01

    High rainfall associated with El Niño events significantly increases runoff and stream discharge in southern Brazil. High freshwater discharge changes salinity, temperature, and water circulation patterns that can affect the fish estuarine assemblage. Using long-term data obtained from standardized surveys, we analyzed fish assemblage structure and dynamics in shallow waters of the Patos Lagoon estuary in southern Brazil before, during, and after the 1997-1998 El Niño event. Overall, the relative abundance of all the fish groups in the estuary was about five times lower during the El Niño than before and after. Freshwater vagrants were the only group with greater abundance during El Niño. Fish species richness was higher in the estuary during the El Niño event, when many freshwater species expanded their ranges into the Patos Lagoon estuary, than before or after the El Niño. El Niño-induced assemblage changes were not highly persistent, and the estuarine fish assemblage returned to its pre-El Niño state within 18 months after the El Niño period. Densities of many marine and estuarine fishes increased to pre-El Niño levels within 3-6 months of the end of the El Niño period. We suggested that the rapid recovery of fish estuarine populations after the 1997-1998 El Niño may have been caused by one or some combination of: (a) enhanced productivity stimulated by nutrients contained in newly deposited alluvial sediments, and (b) enhanced larvae transport in the large saltwater intrusion that followed the El Niño event. Clearly, fish population dynamics and assemblage structure of the Patos Lagoon estuary can neither be interpreted nor predicted on a long-term basis without explicit consideration of El Niño Southern Oscillation patterns.

  11. Deferrisoma palaeochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea.

    PubMed

    Pérez-Rodríguez, Ileana; Rawls, Matthew; Coykendall, D Katharine; Foustoukos, Dionysis I

    2016-02-01

    A novel thermophilic, anaerobic, mixotrophic bacterium, designated strain MAG-PB1T, was isolated from a shallow-water hydrothermal vent system in Palaeochori Bay off the coast of the island of Milos, Greece. The cells were Gram-negative, rugose, short rods, approximately 1.0 μm long and 0.5 μm wide. Strain MAG-PB1T grew at 30-70 °C (optimum 60 °C), 0-50 g NaCl l- 1 (optimum 15-20 g l- 1) and pH 5.5-8.0 (optimum pH 6.0). Generation time under optimal conditions was 2.5 h. Optimal growth occurred under chemolithoautotrophic conditions with H2 as the energy source and CO2 as the carbon source. Fe(III), Mn(IV), arsenate and selenate were used as electron acceptors. Peptone, tryptone, Casamino acids, sucrose, yeast extract, d-fructose, α-d-glucose and ( - )-d-arabinose also served as electron donors. No growth occurred in the presence of lactate or formate. The G+C content of the genomic DNA was 66.7 mol%. Phylogenetic analysis of the 16S rRNA gene sequence indicated that this organism is closely related to Deferrisoma camini, the first species of a recently described genus in the Deltaproteobacteria. Based on the 16S rRNA gene phylogenetic analysis and on physiological, biochemical and structural characteristics, the strain was found to represent a novel species, for which the name Deferrisoma palaeochoriense sp. nov. is proposed. The type strain is MAG-PB1T ( = JCM 30394T = DSM 29363T).

  12. Deferrisoma palaeochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea.

    PubMed

    Pérez-Rodríguez, Ileana; Rawls, Matthew; Coykendall, D Katharine; Foustoukos, Dionysis I

    2016-02-01

    A novel thermophilic, anaerobic, mixotrophic bacterium, designated strain MAG-PB1T, was isolated from a shallow-water hydrothermal vent system in Palaeochori Bay off the coast of the island of Milos, Greece. The cells were Gram-negative, rugose, short rods, approximately 1.0 μm long and 0.5 μm wide. Strain MAG-PB1T grew at 30-70 °C (optimum 60 °C), 0-50 g NaCl l- 1 (optimum 15-20 g l- 1) and pH 5.5-8.0 (optimum pH 6.0). Generation time under optimal conditions was 2.5 h. Optimal growth occurred under chemolithoautotrophic conditions with H2 as the energy source and CO2 as the carbon source. Fe(III), Mn(IV), arsenate and selenate were used as electron acceptors. Peptone, tryptone, Casamino acids, sucrose, yeast extract, d-fructose, α-d-glucose and ( - )-d-arabinose also served as electron donors. No growth occurred in the presence of lactate or formate. The G+C content of the genomic DNA was 66.7 mol%. Phylogenetic analysis of the 16S rRNA gene sequence indicated that this organism is closely related to Deferrisoma camini, the first species of a recently described genus in the Deltaproteobacteria. Based on the 16S rRNA gene phylogenetic analysis and on physiological, biochemical and structural characteristics, the strain was found to represent a novel species, for which the name Deferrisoma palaeochoriense sp. nov. is proposed. The type strain is MAG-PB1T ( = JCM 30394T = DSM 29363T). PMID:26610851

  13. Effect of shallow-water hydrothermal venting on the biota of Matupi Harbour (Rabaul Caldera, New Britain Island, Papua New Guinea)

    NASA Astrophysics Data System (ADS)

    Tarasov, V. G.; Gebruk, A. V.; Shulkin, V. M.; Kamenev, G. M.; Fadeev, V. I.; Kosmynin, V. N.; Malakhov, V. V.; Starynin, D. A.; Obzhirov, A. I.

    1999-01-01

    Coastal hydrothermal vents in the depth range 0-27 m were studied in Matupi Harbour, a marine bight that is partly isolated from the open sea on the north-east coast of New Britain, Papua New Guinea, where volcanoes are active. Planktonic and benthic communities (including bacteria) in the Harbour were compared with adjacent fully marine areas. The environmental parameters assessed included temperature, salinity, O 2, H 2, hydrocarbons, metals, some species of nitrogen and sulphur, inorganic phosphate, silicate and chlorophyll a. There was pronounced stratification of the waters in the Harbour as a result of inflow of heated volcanic fluids, most evident in the surface 0-3 m layer. The volcanic fluids are rich in phytoplankton nutrients and reduced compounds which stimulate growth of bacterial plankton, bacterial production and enhance primary production. The highest values of photosynthetic fixation (almost 100 mg C m 3 d) and bacterial production (216 mg C m 3 d) found in the Harbour are much greater than previously reported for marine ecosystems. The chemosynthetic fraction of bacterial production varied from 15 to 60%, with highest values in the surface and the near-bottom layers. The zooplankton in the Harbour was dominated by cyclopoid copepods and was low in diversity. Bacterial mats were very evident at the areas of venting, dominated by Thiodendron-like species, but both epifauna and infauna were sparse at the vents. However, areas adjacent to the hydrothermal vents showed the richest benthic communities, with epifauna dominated by corals and sponges and infauna by nematodes. It appeared that benthic community development was inhibited by the hot sediment, rapid sedimentation, lack of hard substratum and large numbers of sponge spicules in the sediment. From dating of the last major volcanic eruption (1943), the Harbour provides an excellent model for studying processes of succession and adaptation in marine communities stressed by shallow-water

  14. Deferrisoma paleochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea

    USGS Publications Warehouse

    Perez-Rodriguez, Ileana M.; Rawls, Matthew; Coykendall, Dolly K.; Foustoukos, Dionysis I.

    2016-01-01

    A novel thermophilic, anaerobic, mixotrophic bacterium, designated strain MAG-PB1T, was isolated from a shallow-water hydrothermal vent system in Palaeochori Bay off the coast of the island of Milos, Greece. The cells were Gram-negative, rugose, short rods, approximately 1.0 μm long and 0.5 μm wide. Strain MAG-PB1T grew at 30–70 °C (optimum 60 °C), 0–50 g NaCl l− 1 (optimum 15–20 g l− 1) and pH 5.5–8.0 (optimum pH 6.0). Generation time under optimal conditions was 2.5 h. Optimal growth occurred under chemolithoautotrophic conditions with H2 as the energy source and CO2 as the carbon source. Fe(III), Mn(IV), arsenate and selenate were used as electron acceptors. Peptone, tryptone, Casamino acids, sucrose, yeast extract, d-fructose, α-d-glucose and ( − )-d-arabinose also served as electron donors. No growth occurred in the presence of lactate or formate. The G+C content of the genomic DNA was 66.7 mol%. Phylogenetic analysis of the 16S rRNA gene sequence indicated that this organism is closely related to Deferrisoma camini, the first species of a recently described genus in the Deltaproteobacteria. Based on the 16S rRNA gene phylogenetic analysis and on physiological, biochemical and structural characteristics, the strain was found to represent a novel species, for which the name Deferrisoma palaeochoriense sp. nov. is proposed. The type strain is MAG-PB1T ( = JCM 30394T = DSM 29363T). 

  15. Shallow-water zoantharians (Cnidaria, Hexacorallia) from the Central Indo-Pacific

    PubMed Central

    Reimer, James D.; Poliseno, Angelo; Hoeksema, Bert W.

    2014-01-01

    Abstract Despite the Central Indo-Pacific (CIP) and the Indonesian Archipelago being a well-known region of coral reef biodiversity, particularly in the ‘Coral Triangle’, little published information is available on its zoantharians (Cnidaria: Hexacorallia: Zoantharia). In order to provide a basis for future research on the Indo-Pacific zoantharian fauna and facilitate comparisons between more well-studied regions such as Japan and the Great Barrier Reef, this report deals with CIP zoantharian specimens in the Naturalis collection in Leiden, the Netherlands; 106 specimens were placed into 24 morpho-species and were supplemented with 88 in situ photographic records from Indonesia, the Philippines, and Papua New Guinea. At least nine morpho-species are likely to be undescribed species, indicating that the region needs more research in order to properly understand zoantharian diversity within the CIP. The Naturalis’ zoantharian specimens are listed by species, as well as all relevant collection information, and in situ images are provided to aid in future studies on zoantharians in the CIP. PMID:25349499

  16. Middle Cretaceous to Oligocene rise of the Middle American landbridge - documented by south-eastwards younging shallow water carbonates

    NASA Astrophysics Data System (ADS)

    Baumgartner-Mora, Claudia; Baumgartner, Peter O.; Barat, Flore

    2013-04-01

    Basements of Southern Central America are oceanic in origin, including the southern half of the classical "Chortis Block" formed by subduction/accretion mélanges named Mesquito Composite Oceanic Terrane (MCOT). The rise of these oceanic basements into the photic zone and eventual emergence was controlled by convergent, collision tectonics, and/or arc development. In this context, shallow carbonate palaeo-environments were short-lived and formed not only on uplifted basements and arcs, but also on (now accreted) volcanic edifices of Pacific oceanic seamounts. From Northern Nicaragua (NW) to Eastern Panama (SE) we observe a systematic younging of the first shallow water carbonate facies encroaching on basements and/or older deep-water formations: In the Siuna area (NE-Nicaragua) Aptian-Albian shallow water limestones dated by rudists and Orbitolina texana rest unconformably on the Jurassic/Early Cretaceous Siuna Serpentinite Mélange, part of the MCOT. In N-Costa Rica, the assembly of several terranes (Santa Elena Ultramafic Unit, Nicoya Complex s. s., Matambu and Manzanillo Terranes) is overlapped by Late Campanian-Maastrichtian shallow water facies dated by rudists and Larger Foraminifera, such as Pseudorbitoides rutteni, Pseudorbitoides israelski, Sulcoperculina sp. and Sulcoperculina globosa. Reworked Campanian-Maastrichtian shallow water material including Larger Foraminifera was found in the Herradura Promontory (central Pacific coast of Costa Rica). It could be derived from an accreted seamount. No shallow carbonates are known so far from the early Palaeocene. The Tempisque Basin (N-Costa Rica) hosts the Barra Honda carbonate Platform (originally >900 km2) dated as late Palaeocene (Thanetian) by planktonic Foraminifera, 87Sr / 86Sr ratios and Ranikothalia spp. Other late Palaeocene shallow carbonates documented in S-Costa Rica/W-Panama (Quepos, Burica) are interpreted as insular carbonate shoals (atolls?) on now accreted seamounts. To the SE of the S

  17. Tomographic inversion of measured cross-correlation functions of ocean noise in shallow water using ray theory

    NASA Astrophysics Data System (ADS)

    Goncharov, V. V.; Shurup, A. S.; Godin, O. A.; Zabotin, N. A.; Vedenev, A. I.; Sergeev, S. N.; Brown, M. G.; Shatravin, A. V.

    2016-07-01

    Based on experimental data obtained in 2012 in the Florida Strait, we study the feasibility of employing ray tomography to retrieve sound speed and flow velocity profiles from measured noise cross-correlation functions. We describe the results of numerical experiments that characterize the inversion errors resulting from peculiarities of the ray structure in shallow water, difficulties in unambiguous identification of ray arrivals, and a decrease in accuracy of ray theory at low frequencies. We show that under conditions of low-mode sound propagation, the use of the classical ray tomography scheme can yield only a rough estimate of the sound speed profile, but it allows approximate reconstruction of the current velocity profile. Application of passive ray tomography to the experimental data yields the current velocity profile in the Straits of Florida, which agrees with independent measurements within the inversion error limit.

  18. A primal-dual mimetic finite element scheme for the rotating shallow water equations on polygonal spherical meshes

    NASA Astrophysics Data System (ADS)

    Thuburn, John; Cotter, Colin J.

    2015-06-01

    A new numerical method is presented for solving the shallow water equations on a rotating sphere using quasi-uniform polygonal meshes. The method uses special families of finite element function spaces to mimic key mathematical properties of the continuous equations and thereby capture several desirable physical properties related to balance and conservation. The method relies on two novel features. The first is the use of compound finite elements to provide suitable finite element spaces on general polygonal meshes. The second is the use of dual finite element spaces on the dual of the original mesh, along with suitably defined discrete Hodge star operators to map between the primal and dual meshes, enabling the use of a finite volume scheme on the dual mesh to compute potential vorticity fluxes. The resulting method has the same mimetic properties as a finite volume method presented previously, but is more accurate on a number of standard test cases.

  19. Variational data assimilation with a semi-Lagrangian semi-implicit global shallow-water equation model and its adjoint

    NASA Technical Reports Server (NTRS)

    Li, Y.; Navon, I. M.; Courtier, P.; Gauthier, P.

    1993-01-01

    An adjoint model is developed for variational data assimilation using the 2D semi-Lagrangian semi-implicit (SLSI) shallow-water equation global model of Bates et al. with special attention being paid to the linearization of the interpolation routines. It is demonstrated that with larger time steps the limit of the validity of the tangent linear model will be curtailed due to the interpolations, especially in regions where sharp gradients in the interpolated variables coupled with strong advective wind occur, a synoptic situation common in the high latitudes. This effect is particularly evident near the pole in the Northern Hemisphere during the winter season. Variational data assimilation experiments of 'identical twin' type with observations available only at the end of the assimilation period perform well with this adjoint model. It is confirmed that the computational efficiency of the semi-Lagrangian scheme is preserved during the minimization process, related to the variational data assimilation procedure.

  20. A mass and momentum flux-form high-order discontinuous Galerkin shallow water model on the cubed-sphere

    NASA Astrophysics Data System (ADS)

    Bao, Lei; Nair, Ramachandran D.; Tufo, Henry M.

    2014-08-01

    A well-balanced discontinuous Galerkin (DG) flux-form shallow-water (SW) model on the sphere is developed and compared with a nodal DG SW model cast in the vector-invariant form for accuracy and conservation properties. A second-order diffusion scheme based on the local discontinuous Galerkin (LDG) method is added to the viscous version of the SW model and tested for conservation behaviors. The inviscid flux-form SW model is found to have better conservation of total energy and zonal angular momentum while the vector-invariant form provides better ability of conserving potential enstrophy. The inviscid flux-form tends to generate spurious vorticity but the LDG scheme combined with a well-balanced treatment can effectively eliminate the small-scale noise and generate smooth and accurate results.

  1. Integration of the shallow water equations on the sphere using a vector semi-Lagrangian scheme with a multigrid solver

    NASA Technical Reports Server (NTRS)

    Bates, J. R.; Semazzi, F. H. M.; Higgins, R. W.; Barros, Saulo R. M.

    1990-01-01

    A vector semi-Lagrangian semi-implicit two-time-level finite-difference integration scheme for the shallow water equations on the sphere is presented. A C-grid is used for the spatial differencing. The trajectory-centered discretization of the momentum equation in vector form eliminates pole problems and, at comparable cost, gives greater accuracy than a previous semi-Lagrangian finite-difference scheme which used a rotated spherical coordinate system. In terms of the insensitivity of the results to increasing timestep, the new scheme is as successful as recent spectral semi-Lagrangian schemes. In addition, the use of a multigrid method for solving the elliptic equation for the geopotential allows efficient integration with an operation count which, at high resolution, is of lower order than in the case of the spectral models. The properties of the new scheme should allow finite-difference models to compete with spectral models more effectively than has previously been possible.

  2. The effects of the Asselin time filter on numerical solutions to the linearized shallow-water wave equations

    NASA Technical Reports Server (NTRS)

    Schlesinger, R. E.; Johnson, D. R.; Uccellini, L. W.

    1983-01-01

    In the present investigation, a one-dimensional linearized analysis is used to determine the effect of Asselin's (1972) time filter on both the computational stability and phase error of numerical solutions for the shallow water wave equations, in cases with diffusion but without rotation. An attempt has been made to establish the approximate optimal values of the filtering parameter nu for each of the 'lagged', Dufort-Frankel, and Crank-Nicholson diffusion schemes, suppressing the computational wave mode without materially altering the physical wave mode. It is determined that in the presence of diffusion, the optimum filter length depends on whether waves are undergoing significant propagation. When moderate propagation is present, with or without diffusion, the Asselin filter has little effect on the spatial phase lag of the physical mode for the leapfrog advection scheme of the three diffusion schemes considered.

  3. An energy and potential enstrophy conserving scheme for the shallow water equations. [orography effects on atmospheric circulation

    NASA Technical Reports Server (NTRS)

    Arakawa, A.; Lamb, V. R.

    1979-01-01

    A three-dimensional finite difference scheme for the solution of the shallow water momentum equations which accounts for the conservation of potential enstrophy in the flow of a homogeneous incompressible shallow atmosphere over steep topography as well as for total energy conservation is presented. The scheme is derived to be consistent with a reasonable scheme for potential vorticity advection in a long-term integration for a general flow with divergent mass flux. Numerical comparisons of the characteristics of the present potential enstrophy-conserving scheme with those of a scheme that conserves potential enstrophy only for purely horizontal nondivergent flow are presented which demonstrate the reduction of computational noise in the wind field with the enstrophy-conserving scheme and its convergence even in relatively coarse grids.

  4. A control volume method on an icosahedral grid for numerical integration of the shallow-water equations on the sphere

    SciTech Connect

    Chern, I-Liang

    1994-08-01

    Two versions of a control volume method on a symmetrized icosahedral grid are proposed for solving the shallow-water equations on a sphere. One version expresses of the equations in the 3-D Cartersian coordinate system, while the other expresses the equations in the northern/southern polar sterographic coordinate systems. The pole problem is avoided because of these expressions in both versions and the quasi-homogenity of the icosahedral grid. Truncation errors and convergence tests of the numerical gradient and divergent operators associated with this method are studied. A convergence tests of the numerical gradient and divergent operators associated with this method are studied. A convergence test for a steady zonal flow is demonstrated. Several simulations of Rossby-Haurwitz waves with various numbers are also performed.

  5. Assimilation of spatially distributed water levels into a shallow-water flood model. Part I: Mathematical method and test case

    NASA Astrophysics Data System (ADS)

    Lai, X.; Monnier, J.

    2009-10-01

    SummaryRecent applications of remote sensing techniques produce rich spatially distributed observations for flood monitoring. In order to improve numerical flood prediction, we have developed a variational data assimilation method (4D-var) that combines remote sensing data (spatially distributed water levels extracted from spatial images) and a 2D shallow water model. In the present paper (part I), we demonstrate the efficiency of the method with a test case. First, we assimilated a single fully observed water level image to identify time-independent parameters (e.g. Manning coefficients and initial conditions) and time-dependent parameters (e.g. inflow). Second, we combined incomplete observations (a time series of water elevations at certain points and one partial image). This last configuration was very similar to the real case we analyze in a forthcoming paper (part II). In addition, a temporal strategy with time overlapping is suggested to decrease the amount of memory required for long-duration simulation.

  6. Ice berg cracking events as identified from underwater ambient noise measurements in the shallow waters of Ny-Alesund, Arctic

    NASA Astrophysics Data System (ADS)

    Ashokan, M.; Latha, G.; Thirunavukkarasu, A.; Raguraman, G.; Venkatesan, R.

    2016-06-01

    This paper presents the work carried out on the analysis of preliminary underwater ambient noise measurements in the shallow waters of Kongsfjorden fjord, Arctic in the summer season, in which the ice berg cracking noise is identified. In the summer period, the melting of ice cover is fast and hence the ice bergs are free to move and float in the ocean. Underwater ambient noise has been acquired in the Kongsfjorden fjord, Arctic sea on 19th July 2015 at 5 m water depth, where the ocean depth is 50 m. Due to the tensile cracks at the surface of the sea ice by thermal expansion, ice berg calving and bobbing occurred near the experiment site. Analysis of power spectra shows that ice berg calving noise falls in the frequency band 100 Hz-500 Hz and the ice berg bobbing noise falls in the frequency band 200 Hz-400 Hz.

  7. The impact of implanted whale carcass on nematode communities in shallow water area of Peter the Great Bay (East Sea)

    NASA Astrophysics Data System (ADS)

    Pavlyuk, Olga N.; Trebukhova, Yulia A.; Tarasov, Vitalyi G.

    2009-09-01

    In May, 2007 we sank the remains of a Minke whale ( Balaenoptera acutorostrata) in the East Sea, Peter the Great Bay, at 30 m of water near the coast of Big Pelis Island. In the present study we describe the nematode communities in sediments under the implanted whale carcass. Abundance of nematodes increased with the distance from the carcass. Dominant trophic group was non-selective deposit feeders. The highest values of indexes of a specific diversity and evenness were noted in sediments under the whale, while domination index occurred at the highest distance from the whale. The suggestion is made that the cause of low density of nematodes in sediments under the whale is an extreme increase in number of macrofaunal animals, and predation and food competition between macro- and meiofauna. The changes noted in nematode assemblages living in an implanted whale in shallow waters are similar to those in deep-sea assemblages.

  8. Parallel block preconditioning techniques for the numerical simulation of the shallow water flow using finite element methods

    SciTech Connect

    Cai, Y.; Navon, I.M.

    1995-11-01

    In this paper, the authors report their work on applying Krylov iterative methods, accelerated by parallelizable domain-decomposed (DD) preconditioners, to the solution of nonsymmetric linear algebraic equations arising from implicit time discretization of a finite element model of the shallow water equations on a limited-area domain. Two types of previously proposed DD preconditioners are employed and a novel one is advocated to accelerate, with post-preconditioning, the convergence of three popular and competitive Krylov iterative linear solvers. Performance sensitivities of these preconditioners to inexact subdomain solvers are also reported. Autotasking, the parallel processing capability representing the third phase of multitasking libraries on CRAY Y-MP, has been exploited and successfully applied to both loop and subroutine level parallelization. Satisfactory speedup results were obtained. On the other hand, automatic loop-level parallelization, made possible by the autotasking preprocessor, attained only a speedup smaller than a factor of two. 39 refs., 2 figs., 6 tabs.

  9. On the advantage of well-balanced schemes for moving-water equilibria of the shallow water equations

    SciTech Connect

    Xing, Yulong; Shu, Chi-wang; Noelle, Sebastian

    2011-01-01

    This note aims at demonstrating the advantage of moving-water well-balanced schemes over still-water well-balanced schemes for the shallow water equations. We concentrate on numerical examples with solutions near a moving-water equilibrium. For such examples, still-water well-balanced methods are not capable of capturing the small perturbations of the moving-water equilibrium and may generate significant spurious oscillations, unless an extremely refined mesh is used. On the other hand, moving-water well-balanced methods perform well in these tests. The numerical examples in this note clearly demonstrate the importance of utilizing moving-water well-balanced methods for solutions near a moving-water equilibrium.

  10. Inverse algorithms for 2D shallow water equations in presence of wet dry fronts: Application to flood plain dynamics

    NASA Astrophysics Data System (ADS)

    Monnier, J.; Couderc, F.; Dartus, D.; Larnier, K.; Madec, R.; Vila, J.-P.

    2016-11-01

    The 2D shallow water equations adequately model some geophysical flows with wet-dry fronts (e.g. flood plain or tidal flows); nevertheless deriving accurate, robust and conservative numerical schemes for dynamic wet-dry fronts over complex topographies remains a challenge. Furthermore for these flows, data are generally complex, multi-scale and uncertain. Robust variational inverse algorithms, providing sensitivity maps and data assimilation processes may contribute to breakthrough shallow wet-dry front dynamics modelling. The present study aims at deriving an accurate, positive and stable finite volume scheme in presence of dynamic wet-dry fronts, and some corresponding inverse computational algorithms (variational approach). The schemes and algorithms are assessed on classical and original benchmarks plus a real flood plain test case (Lèze river, France). Original sensitivity maps with respect to the (friction, topography) pair are performed and discussed. The identification of inflow discharges (time series) or friction coefficients (spatially distributed parameters) demonstrate the algorithms efficiency.

  11. Influence of open ocean nitrogen supply on the skeletal δ15N of modern shallow-water scleractinian corals

    NASA Astrophysics Data System (ADS)

    Wang, Xingchen T.; Sigman, Daniel M.; Cohen, Anne L.; Sinclair, Daniel J.; Sherrell, Robert M.; Cobb, Kim M.; Erler, Dirk V.; Stolarski, Jarosław; Kitahara, Marcelo V.; Ren, Haojia

    2016-05-01

    The isotopic composition of skeleton-bound organic nitrogen in shallow-water scleractinian corals (hereafter, CS-δ15N) is an emerging tool for studying the marine nitrogen cycle in the past. The CS-δ15N has been shown to reflect the δ15N of nitrogen (N) sources to corals, with most applications to date focusing on the anthropogenic/terrestrial N inputs to reef environments. However, many coral reefs receive their primary N sources from the open ocean, and the CS-δ15N of these corals may provide information on past changes in the open ocean regional and global N cycle. Using a recently developed persulfate/denitrifier-based method, we measured CS-δ15N in modern shallow-water scleractinian corals from 8 sites proximal to the open ocean. At sites with low open ocean surface nitrate concentrations typical of the subtropics and tropics, measured CS-δ15N variation on seasonal and annual timescales is most often less than 2‰. In contrast, a broad range in CS-δ15N (of ∼10‰) is measured across these sites, with a strong correlation between CS-δ15N and the δ15N of the deep nitrate supply to the surface waters near the reefs. While CS-δ15N can be affected by other N sources as well and can vary in response to local reef conditions as well as coral/symbiont physiological changes, this survey indicates that, when considering corals proximal to the open ocean, the δ15N of the subsurface nitrate supply to surface waters drives most of the CS-δ15N variation across the global ocean. Thus, CS-δ15N is a promising proxy for reconstructing the open ocean N cycle in the past.

  12. Application of fusion algorithims for computer-aided detection and classification of bottom mines to shallow-water test data

    NASA Astrophysics Data System (ADS)

    Ciany, Charles M.; Zurawski, William; Dobeck, Gerald J.

    2002-08-01

    The fusion of multiple Computer Aided Detection/Computer Aided Classification (CAD/CAC) algorithms has been shown to be effective in reducing the false alarm rate associated with the automated classification of bottom mine-like objects when applied to side-scan sonar images taken in Very Shallow Water (VSW) environments. This paper reports on the application of such CAD/CAC Fusion algorithms to the shallow water environment, using sidescan sonar data taken in the Gulf of Mexico during April 2000. The fusion algorithm accepts the classification confidence levels and associated contact locations from two different CAD/CAC algorithms, clusters the contacts based on the distance between their locations, and then declares a valid target when a clustered contact passes a prescribed fusion criterion. Two different fusion criteria are evaluated: the first based on the Fisher Discriminant, and the second based on a constrained optimization approach, which minimizes the total number of false alarms over the clustering distance and cluster confidence factor thresholds for a given probability of correct classification. The Fisher-based fusion provided an 82% probability of correct classification at a false alarm rate of 0.034 false alarms per image per side (port or starboard). This performance represented a 2:1 reduction in false alarms over a single CAD/CAC algorithm at this same probability of correct classification. The cluster confidence fusion algorithm performed nearly as well, yielding the 82% correct classification probability at a false alarm rate of 0.039 false alarms per image per side.

  13. Multiple Suppression and Imaging of Marine Seismic Data from The Shallow Water Area in Southern East China Sea Shelf Basin

    NASA Astrophysics Data System (ADS)

    Shi, J.; Luan, X.; Yang, C.

    2015-12-01

    Neither surface-related multiple elimination(SRME) nor predictive de-convolution method is effective to suppress the multiple of marine seismic data from the shallow water area. The former method needs the accurate reflection of seafloor, which is mixed with the direct wave in the near offset range. The other one could probably lose the primary wave when applied to the shallow water seismic data. We introduced the new method: deterministic water-layer de-multiple method (DWD) which is capable for the poor extrapolate result of near-offset traces. Firstly, the data shifts as downward continuation in tau-p domain with a water-layer period and the multiple model will be obtained. Then, the original seismic subtracts adaptively with the multiple model. Finally, we would get the de-multiple data after inverse tau-p transform. Marine seismic real data is from southern part of East China Sea Shelf Basin. This area has become the potential target for marine hydrocarbon exploration, it is located in the junction of the Eurasian plate pacific plate and Indian plate. Because the average water depth is less than 100 meters, seismic data contains abundant of multiple, especially the surface-related multiple. As a result it is difficult to distinguish the strata structure clearly. We used DWD approach to remove the water-layer multiple, cut off the seafloor reflection events and then suppressed the residual surface-related multiple by the traditional SRME. At last , the radon transform was applied to eliminate the multiple with long period . With these steps, we suppressed the multiple of marine seismic data from this area effectively. After multiple is removed , we acquired more accurate velocity to build the velocity model of migration. With the pre-stack migration technique, reflections from each geological period are shown clearly in the seismic section. This work was supported by the National Science Foundation of China(grant no. 41476053).

  14. Magnetostratigraphy of Mesozoic shallow-water carbonates: Preliminary results from the Middle Jurassic of the Paris basin

    SciTech Connect

    Aissaoui, D.M.; Kirschvink, J.L. )

    1991-03-01

    The use of sedimentary paleomagnetism has enhanced greatly our understanding of the timing of deposition and diagenesis of Cenozoic platform and reefal carbonates. Its application to similar but older deposits will have direct implications for economic exploration and development. The authors report here preliminary paleomagnetic results from the Middle Jurassic limestones of the Paris basin (France). The samples consist mainly of bioclastic and oolitic limestones deposited in ancient counterpart of the shallow-water environments of the Bahama platform. The Jurassic samples are stable to progressive, incremental demagnetization and exhibit magnetization patterns identical to Cenozoic rocks from the Bahama platform or Mururoa Atoll. The natural remanent magnetization of these limestones is weak and comprised between 7.7 x 10{sup {minus}9} to 1.8 x 10{sup {minus}8} AM{sup 2}/kg. Magnetic components of both normal and reversed polarity are observed. Paired isothermal remanent magnetization (IRM) and alternating field demagnetization experiments show that most of the remanence is lost between 20 and 45 mT, which is typical of single-domain biogenic magnetite or maghemite. The ratio of IRM at H{sub RG} to the saturation IRM ranges from 35 to 42% indicating a moderate to low interparticle interaction. This is confirmed by the anhysteretic remanent magnetization as compared with intact,