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Sample records for ale hydrodynamics code

  1. Modeling Warm Dense Matter Experiments using the 3D ALE-AMR Code and the Move Toward Exascale Computing

    SciTech Connect

    Koniges, A; Eder, E; Liu, W; Barnard, J; Friedman, A; Logan, G; Fisher, A; Masers, N; Bertozzi, A

    2011-11-04

    The Neutralized Drift Compression Experiment II (NDCX II) is an induction accelerator planned for initial commissioning in 2012. The final design calls for a 3 MeV, Li+ ion beam, delivered in a bunch with characteristic pulse duration of 1 ns, and transverse dimension of order 1 mm. The NDCX II will be used in studies of material in the warm dense matter (WDM) regime, and ion beam/hydrodynamic coupling experiments relevant to heavy ion based inertial fusion energy. We discuss recent efforts to adapt the 3D ALE-AMR code to model WDM experiments on NDCX II. The code, which combines Arbitrary Lagrangian Eulerian (ALE) hydrodynamics with Adaptive Mesh Refinement (AMR), has physics models that include ion deposition, radiation hydrodynamics, thermal diffusion, anisotropic material strength with material time history, and advanced models for fragmentation. Experiments at NDCX-II will explore the process of bubble and droplet formation (two-phase expansion) of superheated metal solids using ion beams. Experiments at higher temperatures will explore equation of state and heavy ion fusion beam-to-target energy coupling efficiency. Ion beams allow precise control of local beam energy deposition providing uniform volumetric heating on a timescale shorter than that of hydrodynamic expansion. The ALE-AMR code does not have any export control restrictions and is currently running at the National Energy Research Scientific Computing Center (NERSC) at LBNL and has been shown to scale well to thousands of CPUs. New surface tension models that are being implemented and applied to WDM experiments. Some of the approaches use a diffuse interface surface tension model that is based on the advective Cahn-Hilliard equations, which allows for droplet breakup in divergent velocity fields without the need for imposed perturbations. Other methods require seeding or other methods for droplet breakup. We also briefly discuss the effects of the move to exascale computing and related

  2. A variational multiscale finite element method for monolithic ALE computations of shock hydrodynamics using nodal elements

    NASA Astrophysics Data System (ADS)

    Zeng, X.; Scovazzi, G.

    2016-06-01

    We present a monolithic arbitrary Lagrangian-Eulerian (ALE) finite element method for computing highly transient flows with strong shocks. We use a variational multiscale (VMS) approach to stabilize a piecewise-linear Galerkin formulation of the equations of compressible flows, and an entropy artificial viscosity to capture strong solution discontinuities. Our work demonstrates the feasibility of VMS methods for highly transient shock flows, an area of research for which the VMS literature is extremely scarce. In addition, the proposed monolithic ALE method is an alternative to the more commonly used Lagrangian+remap methods, in which, at each time step, a Lagrangian computation is followed by mesh smoothing and remap (conservative solution interpolation). Lagrangian+remap methods are the methods of choice in shock hydrodynamics computations because they provide nearly optimal mesh resolution in proximity of shock fronts. However, Lagrangian+remap methods are not well suited for imposing inflow and outflow boundary conditions. These issues offer an additional motivation for the proposed approach, in which we first perform the mesh motion, and then the flow computations using the monolithic ALE framework. The proposed method is second-order accurate and stable, as demonstrated by extensive numerical examples in two and three space dimensions.

  3. SOLA-STAR: a one-dimensional ICED-ALE hydrodynamics program for spherically symmetric flows

    SciTech Connect

    Cloutman, L.D.

    1980-07-01

    This report describes a simple, general-purpose, and efficient algorithm for solving one-dimensional spherically symmetric, transient fluid-dynamics problems using a variation of the ICED-ALE technique. Included are the finite difference equations, three test problems that illustrate various capabilities of the program, and a complete code description, including a listing, sample data decks and output, a summary of important variable names, and hints for conversion to other operating systems.

  4. Shadowfax: Moving mesh hydrodynamical integration code

    NASA Astrophysics Data System (ADS)

    Vandenbroucke, Bert

    2016-05-01

    Shadowfax simulates galaxy evolution. Written in object-oriented modular C++, it evolves a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. For the hydrodynamical integration, it makes use of a (co-) moving Lagrangian mesh. The code has a 2D and 3D version, contains utility programs to generate initial conditions and visualize simulation snapshots, and its input/output is compatible with a number of other simulation codes, e.g. Gadget2 (ascl:0003.001) and GIZMO (ascl:1410.003).

  5. KIVA-4: An unstructured ALE code for compressible gas flow with sprays

    NASA Astrophysics Data System (ADS)

    Torres, David J.; Trujillo, Mario F.

    2006-12-01

    The KIVA family of codes was developed to simulate the thermal and fluid processes taking place inside an internal combustion engine. In this latest version of this open source code, KIVA-4, the numerics have been generalized to unstructrured meshes. This change required modifications to the Lagrangian phase of the computations, the pressure solution and fundamental changes in the fluxing schemes of the rezoning phase. This newest version of the code inherits all the droplet phase capabilities and physical sub-models of previous versions. The integration of the gas phase equations with moving solid boundaries continues to employ the successful arbitrary Lagrangian-Eulerian (ALE) methodology. Its new unstructured capability facilitates grid construction in complicated geometries and affords a higher degree of flexibility. The numerics of the code, emphasizing the new additions, are described. Various computational examples are performed demonstrating the new capabilities of the code.

  6. TORUS: Radiation transport and hydrodynamics code

    NASA Astrophysics Data System (ADS)

    Harries, Tim

    2014-04-01

    TORUS is a flexible radiation transfer and radiation-hydrodynamics code. The code has a basic infrastructure that includes the AMR mesh scheme that is used by several physics modules including atomic line transfer in a moving medium, molecular line transfer, photoionization, radiation hydrodynamics and radiative equilibrium. TORUS is useful for a variety of problems, including magnetospheric accretion onto T Tauri stars, spiral nebulae around Wolf-Rayet stars, discs around Herbig AeBe stars, structured winds of O supergiants and Raman-scattered line formation in symbiotic binaries, and dust emission and molecular line formation in star forming clusters. The code is written in Fortran 2003 and is compiled using a standard Gnu makefile. The code is parallelized using both MPI and OMP, and can use these parallel sections either separately or in a hybrid mode.

  7. An implicit Smooth Particle Hydrodynamic code

    SciTech Connect

    Charles E. Knapp

    2000-04-01

    An implicit version of the Smooth Particle Hydrodynamic (SPH) code SPHINX has been written and is working. In conjunction with the SPHINX code the new implicit code models fluids and solids under a wide range of conditions. SPH codes are Lagrangian, meshless and use particles to model the fluids and solids. The implicit code makes use of the Krylov iterative techniques for solving large linear-systems and a Newton-Raphson method for non-linear corrections. It uses numerical derivatives to construct the Jacobian matrix. It uses sparse techniques to save on memory storage and to reduce the amount of computation. It is believed that this is the first implicit SPH code to use Newton-Krylov techniques, and is also the first implicit SPH code to model solids. A description of SPH and the techniques used in the implicit code are presented. Then, the results of a number of tests cases are discussed, which include a shock tube problem, a Rayleigh-Taylor problem, a breaking dam problem, and a single jet of gas problem. The results are shown to be in very good agreement with analytic solutions, experimental results, and the explicit SPHINX code. In the case of the single jet of gas case it has been demonstrated that the implicit code can do a problem in much shorter time than the explicit code. The problem was, however, very unphysical, but it does demonstrate the potential of the implicit code. It is a first step toward a useful implicit SPH code.

  8. Production code control system for hydrodynamics simulations

    SciTech Connect

    Slone, D.M.

    1997-08-18

    We describe how the Production Code Control System (pCCS), written in Perl, has been used to control and monitor the execution of a large hydrodynamics simulation code in a production environment. We have been able to integrate new, disparate, and often independent, applications into the PCCS framework without the need to modify any of our existing application codes. Both users and code developers see a consistent interface to the simulation code and associated applications regardless of the physical platform, whether an MPP, SMP, server, or desktop workstation. We will also describe our use of Perl to develop a configuration management system for the simulation code, as well as a code usage database and report generator. We used Perl to write a backplane that allows us plug in preprocessors, the hydrocode, postprocessors, visualization tools, persistent storage requests, and other codes. We need only teach PCCS a minimal amount about any new tool or code to essentially plug it in and make it usable to the hydrocode. PCCS has made it easier to link together disparate codes, since using Perl has removed the need to learn the idiosyncrasies of system or RPC programming. The text handling in Perl makes it easy to teach PCCS about new codes, or changes to existing codes.

  9. Radiation hydrodynamics integrated in the PLUTO code

    NASA Astrophysics Data System (ADS)

    Kolb, Stefan M.; Stute, Matthias; Kley, Wilhelm; Mignone, Andrea

    2013-11-01

    Aims: The transport of energy through radiation is very important in many astrophysical phenomena. In dynamical problems the time-dependent equations of radiation hydrodynamics have to be solved. We present a newly developed radiation-hydrodynamics module specifically designed for the versatile magnetohydrodynamic (MHD) code PLUTO. Methods: The solver is based on the flux-limited diffusion approximation in the two-temperature approach. All equations are solved in the co-moving frame in the frequency-independent (gray) approximation. The hydrodynamics is solved by the different Godunov schemes implemented in PLUTO, and for the radiation transport we use a fully implicit scheme. The resulting system of linear equations is solved either using the successive over-relaxation (SOR) method (for testing purposes) or using matrix solvers that are available in the PETSc library. We state in detail the methodology and describe several test cases to verify the correctness of our implementation. The solver works in standard coordinate systems, such as Cartesian, cylindrical, and spherical, and also for non-equidistant grids. Results: We present a new radiation-hydrodynamics solver coupled to the MHD-code PLUTO that is a modern, versatile, and efficient new module for treating complex radiation hydrodynamical problems in astrophysics. As test cases, either purely radiative situations, or full radiation-hydrodynamical setups (including radiative shocks and convection in accretion disks) were successfully studied. The new module scales very well on parallel computers using MPI. For problems in star or planet formation, we added the possibility of irradiation by a central source.

  10. VH-1: Multidimensional ideal compressible hydrodynamics code

    NASA Astrophysics Data System (ADS)

    Hawley, John; Blondin, John; Lindahl, Greg; Lufkin, Eric

    2012-04-01

    VH-1 is a multidimensional ideal compressible hydrodynamics code written in FORTRAN for use on any computing platform, from desktop workstations to supercomputers. It uses a Lagrangian remap version of the Piecewise Parabolic Method developed by Paul Woodward and Phil Colella in their 1984 paper. VH-1 comes in a variety of versions, from a simple one-dimensional serial variant to a multi-dimensional version scalable to thousands of processors.

  11. Building a Hydrodynamics Code with Kinetic Theory

    NASA Astrophysics Data System (ADS)

    Sagert, Irina; Bauer, Wolfgang; Colbry, Dirk; Pickett, Rodney; Strother, Terrance

    2013-08-01

    We report on the development of a test-particle based kinetic Monte Carlo code for large systems and its application to simulate matter in the continuum regime. Our code combines advantages of the Direct Simulation Monte Carlo and the Point-of-Closest-Approach methods to solve the collision integral of the Boltzmann equation. With that, we achieve a high spatial accuracy in simulations while maintaining computational feasibility when applying a large number of test-particles. The hybrid setup of our approach allows us to study systems which move in and out of the hydrodynamic regime, with low and high particle densities. To demonstrate our code's ability to reproduce hydrodynamic behavior we perform shock wave simulations and focus here on the Sedov blast wave test. The blast wave problem describes the evolution of a spherical expanding shock front and is an important verification problem for codes which are applied in astrophysical simulation, especially for approaches which aim to study core-collapse supernovae.

  12. EUNHA: a New Cosmological Hydrodynamic Simulation Code

    NASA Astrophysics Data System (ADS)

    Shin, Jihye; Kim, Juhan; Kim, Sungsoo S.; Park, Changbom

    2014-06-01

    We develop a parallel cosmological hydrodynamic simulation code designed for the study of formation and evolution of cosmological structures. The gravitational force is calculated using the TreePM method and the hydrodynamics is implemented based on the smoothed particle hydrodynamics. The initial displacement and velocity of simulation particles are calculated according to second-order Lagrangian perturbation theory using the power spectra of dark matter and baryonic matter. The initial background temperature is given by Recfast and the temperature fluctuations at the initial particle position are assigned according to the adiabatic model. We use a time-limiter scheme over the individual time steps to capture shock-fronts and to ease the time-step tension between the shock and preshock particles. We also include the astrophysical gas processes of radiative heating/cooling, star formation, metal enrichment, and supernova feedback. We test the code in several standard cases such as one-dimensional Riemann problems, Kelvin-Helmholtz, and Sedov blast wave instability. Star formation on the galactic disk is investigated to check whether the Schmidt-Kennicutt relation is properly recovered. We also study global star formation history at different simulation resolutions and compare them with observations.

  13. Coupling Magnetic Fields and ALE Hydrodynamics for 3D Simulations of MFCG's

    SciTech Connect

    White, D; Rieben, R; Wallin, B

    2006-09-20

    We review the development of a full 3D multiphysics code for the simulation of explosively driven Magnetic Flux Compression Generators (MFCG) and related pulse power devices. In a typical MFCG the device is seeded with an initial electric current and the device is then detonated. The detonation compresses the magnetic field and amplifies the current. This is a multiphysics problem in that detonation kinetics, electromagnetic diffusion and induction, material deformation, and thermal effects are all important. This is a tightly coupled problem in that the different physical quantities have comparable spatial and temporal variation, and hence should be solved simultaneously on the same computational mesh.

  14. Verification Test Suite (VERTS) For Rail Gun Applications using ALE3D: 2-D Hydrodynamics & Thermal Cases

    SciTech Connect

    Najjar, F M; Solberg, J; White, D

    2008-04-17

    A verification test suite has been assessed with primary focus on low reynolds number flow of liquid metals. This is representative of the interface between the armature and rail in gun applications. The computational multiphysics framework, ALE3D, is used. The main objective of the current study is to provide guidance and gain confidence in the results obtained with ALE3D. A verification test suite based on 2-D cases is proposed and includes the lid-driven cavity and the Couette flow are investigated. The hydro and thermal fields are assumed to be steady and laminar in nature. Results are compared with analytical solutions and previously published data. Mesh resolution studies are performed along with various models for the equation of state.

  15. KIVA reactive hydrodynamics code applied to detonations in high vacuum

    NASA Astrophysics Data System (ADS)

    Greiner, N. Roy

    1989-08-01

    The KIVA reactive hydrodynamics code was adapted for modeling detonation hydrodynamics in a high vacuum. Adiabatic cooling rapidly freezes detonation reactions as a result of free expansion into the vacuum. After further expansion, a molecular beam of the products is admitted without disturbance into a drift tube, where the products are analyzed with a mass spectrometer. How the model is used for interpretation and design of experiments for detonation chemistry is explained. Modeling of experimental hydrodynamic characterization by laser-schlieren imaging and model-aided mapping that will link chemical composition data to particular volume elements in the explosive charge are also discussed.

  16. FARGO3D: Hydrodynamics/magnetohydrodynamics code

    NASA Astrophysics Data System (ADS)

    Benítez Llambay, Pablo; Masset, Frédéric

    2015-09-01

    A successor of FARGO (ascl:1102.017), FARGO3D is a versatile HD/MHD code that runs on clusters of CPUs or GPUs, with special emphasis on protoplanetary disks. FARGO3D offers Cartesian, cylindrical or spherical geometry; 1-, 2- or 3-dimensional calculations; and orbital advection (aka FARGO) for HD and MHD calculations. As in FARGO, a simple Runge-Kutta N-body solver may be used to describe the orbital evolution of embedded point-like objects. There is no need to know CUDA; users can develop new functions in C and have them translated to CUDA automatically to run on GPUs.

  17. A new hydrodynamics code for Type Ia supernovae

    NASA Astrophysics Data System (ADS)

    Leung, S.-C.; Chu, M.-C.; Lin, L.-M.

    2015-12-01

    A two-dimensional hydrodynamics code for Type Ia supernova (SNIa) simulations is presented. The code includes a fifth-order shock-capturing scheme WENO, detailed nuclear reaction network, flame-capturing scheme and sub-grid turbulence. For post-processing, we have developed a tracer particle scheme to record the thermodynamical history of the fluid elements. We also present a one-dimensional radiative transfer code for computing observational signals. The code solves the Lagrangian hydrodynamics and moment-integrated radiative transfer equations. A local ionization scheme and composition dependent opacity are included. Various verification tests are presented, including standard benchmark tests in one and two dimensions. SNIa models using the pure turbulent deflagration model and the delayed-detonation transition model are studied. The results are consistent with those in the literature. We compute the detailed chemical evolution using the tracer particles' histories, and we construct corresponding bolometric light curves from the hydrodynamics results. We also use a GPU to speed up the computation of some highly repetitive subroutines. We achieve an acceleration of 50 times for some subroutines and a factor of 6 in the global run time.

  18. Extending ALE3D, an Arbitrarily Connected hexahedral 3D Code, to Very Large Problem Size (U)

    SciTech Connect

    Nichols, A L

    2010-12-15

    As the number of compute units increases on the ASC computers, the prospect of running previously unimaginably large problems is becoming a reality. In an arbitrarily connected 3D finite element code, like ALE3D, one must provide a unique identification number for every node, element, face, and edge. This is required for a number of reasons, including defining the global connectivity array required for domain decomposition, identifying appropriate communication patterns after domain decomposition, and determining the appropriate load locations for implicit solvers, for example. In most codes, the unique identification number is defined as a 32-bit integer. Thus the maximum value available is 231, or roughly 2.1 billion. For a 3D geometry consisting of arbitrarily connected hexahedral elements, there are approximately 3 faces for every element, and 3 edges for every node. Since the nodes and faces need id numbers, using 32-bit integers puts a hard limit on the number of elements in a problem at roughly 700 million. The first solution to this problem would be to replace 32-bit signed integers with 32-bit unsigned integers. This would increase the maximum size of a problem by a factor of 2. This provides some head room, but almost certainly not one that will last long. Another solution would be to replace all 32-bit int declarations with 64-bit long long declarations. (long is either a 32-bit or a 64-bit integer, depending on the OS). The problem with this approach is that there are only a few arrays that actually need to extended size, and thus this would increase the size of the problem unnecessarily. In a future computing environment where CPUs are abundant but memory relatively scarce, this is probably the wrong approach. Based on these considerations, we have chosen to replace only the global identifiers with the appropriate 64-bit integer. The problem with this approach is finding all the places where data that is specified as a 32-bit integer needs to be

  19. Test Problems for Reactive Flow HE Model in the ALE3D Code and Limited Sensitivity Study

    SciTech Connect

    Gerassimenko, M.

    2000-03-01

    We document quick running test problems for a reactive flow model of HE initiation incorporated into ALE3D. A quarter percent change in projectile velocity changes the outcome from detonation to HE burn that dies down. We study the sensitivity of calculated HE behavior to several parameters of practical interest where modeling HE initiation with ALE3D.

  20. RAMSES: A new N-body and hydrodynamical code

    NASA Astrophysics Data System (ADS)

    Teyssier, Romain

    2010-11-01

    A new N-body and hydrodynamical code, called RAMSES, is presented. It has been designed to study structure formation in the universe with high spatial resolution. The code is based on Adaptive Mesh Refinement (AMR) technique, with a tree based data structure allowing recursive grid refinements on a cell-by-cell basis. The N-body solver is very similar to the one developed for the ART code (Kravtsov et al. 97), with minor differences in the exact implementation. The hydrodynamical solver is based on a second-order Godunov method, a modern shock-capturing scheme known to compute accurately the thermal history of the fluid component. The accuracy of the code is carefully estimated using various test cases, from pure gas dynamical tests to cosmological ones. The specific refinement strategy used in cosmological simulations is described, and potential spurious effects associated to shock waves propagation in the resulting AMR grid are discussed and found to be negligible. Results obtained in a large N-body and hydrodynamical simulation of structure formation in a low density LCDM universe are finally reported, with 256^3 particles and 4.1 10^7 cells in the AMR grid, reaching a formal resolution of 8192^3. A convergence analysis of different quantities, such as dark matter density power spectrum, gas pressure power spectrum and individual haloes temperature profiles, shows that numerical results are converging down to the actual resolution limit of the code, and are well reproduced by recent analytical predictions in the framework of the halo model.

  1. Developing a Multi-Dimensional Hydrodynamics Code with Astrochemical Reactions

    NASA Astrophysics Data System (ADS)

    Kwak, Kyujin; Yang, Seungwon

    2015-08-01

    The Atacama Large Millimeter/submillimeter Array (ALMA) revealed high resolution molecular lines some of which are still unidentified yet. Because formation of these astrochemical molecules has been seldom studied in traditional chemistry, observations of new molecular lines drew a lot of attention from not only astronomers but also chemists both experimental and theoretical. Theoretical calculations for the formation of these astrochemical molecules have been carried out providing reaction rates for some important molecules, and some of theoretical predictions have been measured in laboratories. The reaction rates for the astronomically important molecules are now collected to form databases some of which are publically available. By utilizing these databases, we develop a multi-dimensional hydrodynamics code that includes the reaction rates of astrochemical molecules. Because this type of hydrodynamics code is able to trace the molecular formation in a non-equilibrium fashion, it is useful to study the formation history of these molecules that affects the spatial distribution of some specific molecules. We present the development procedure of this code and some test problems in order to verify and validate the developed code.

  2. Adding kinetics and hydrodynamics to the CHEETAH thermochemical code

    SciTech Connect

    Fried, L.E., Howard, W.M., Souers, P.C.

    1997-01-15

    In FY96 we released CHEETAH 1.40, which made extensive improvements on the stability and user friendliness of the code. CHEETAH now has over 175 users in government, academia, and industry. Efforts have also been focused on adding new advanced features to CHEETAH 2.0, which is scheduled for release in FY97. We have added a new chemical kinetics capability to CHEETAH. In the past, CHEETAH assumed complete thermodynamic equilibrium and independence of time. The addition of a chemical kinetic framework will allow for modeling of time-dependent phenomena, such as partial combustion and detonation in composite explosives with large reaction zones. We have implemented a Wood-Kirkwood detonation framework in CHEETAH, which allows for the treatment of nonideal detonations and explosive failure. A second major effort in the project this year has been linking CHEETAH to hydrodynamic codes to yield an improved HE product equation of state. We have linked CHEETAH to 1- and 2-D hydrodynamic codes, and have compared the code to experimental data. 15 refs., 13 figs., 1 tab.

  3. A nonlocal electron conduction model for multidimensional radiation hydrodynamics codes

    NASA Astrophysics Data System (ADS)

    Schurtz, G. P.; Nicolaï, Ph. D.; Busquet, M.

    2000-10-01

    Numerical simulation of laser driven Inertial Confinement Fusion (ICF) related experiments require the use of large multidimensional hydro codes. Though these codes include detailed physics for numerous phenomena, they deal poorly with electron conduction, which is the leading energy transport mechanism of these systems. Electron heat flow is known, since the work of Luciani, Mora, and Virmont (LMV) [Phys. Rev. Lett. 51, 1664 (1983)], to be a nonlocal process, which the local Spitzer-Harm theory, even flux limited, is unable to account for. The present work aims at extending the original formula of LMV to two or three dimensions of space. This multidimensional extension leads to an equivalent transport equation suitable for easy implementation in a two-dimensional radiation-hydrodynamic code. Simulations are presented and compared to Fokker-Planck simulations in one and two dimensions of space.

  4. RAM: a Relativistic Adaptive Mesh Refinement Hydrodynamics Code

    SciTech Connect

    Zhang, Wei-Qun; MacFadyen, Andrew I.; /Princeton, Inst. Advanced Study

    2005-06-06

    The authors have developed a new computer code, RAM, to solve the conservative equations of special relativistic hydrodynamics (SRHD) using adaptive mesh refinement (AMR) on parallel computers. They have implemented a characteristic-wise, finite difference, weighted essentially non-oscillatory (WENO) scheme using the full characteristic decomposition of the SRHD equations to achieve fifth-order accuracy in space. For time integration they use the method of lines with a third-order total variation diminishing (TVD) Runge-Kutta scheme. They have also implemented fourth and fifth order Runge-Kutta time integration schemes for comparison. The implementation of AMR and parallelization is based on the FLASH code. RAM is modular and includes the capability to easily swap hydrodynamics solvers, reconstruction methods and physics modules. In addition to WENO they have implemented a finite volume module with the piecewise parabolic method (PPM) for reconstruction and the modified Marquina approximate Riemann solver to work with TVD Runge-Kutta time integration. They examine the difficulty of accurately simulating shear flows in numerical relativistic hydrodynamics codes. They show that under-resolved simulations of simple test problems with transverse velocity components produce incorrect results and demonstrate the ability of RAM to correctly solve these problems. RAM has been tested in one, two and three dimensions and in Cartesian, cylindrical and spherical coordinates. they have demonstrated fifth-order accuracy for WENO in one and two dimensions and performed detailed comparison with other schemes for which they show significantly lower convergence rates. Extensive testing is presented demonstrating the ability of RAM to address challenging open questions in relativistic astrophysics.

  5. Pencil: Finite-difference Code for Compressible Hydrodynamic Flows

    NASA Astrophysics Data System (ADS)

    Brandenburg, Axel; Dobler, Wolfgang

    2010-10-01

    The Pencil code is a high-order finite-difference code for compressible hydrodynamic flows with magnetic fields. It is highly modular and can easily be adapted to different types of problems. The code runs efficiently under MPI on massively parallel shared- or distributed-memory computers, like e.g. large Beowulf clusters. The Pencil code is primarily designed to deal with weakly compressible turbulent flows. To achieve good parallelization, explicit (as opposed to compact) finite differences are used. Typical scientific targets include driven MHD turbulence in a periodic box, convection in a slab with non-periodic upper and lower boundaries, a convective star embedded in a fully nonperiodic box, accretion disc turbulence in the shearing sheet approximation, self-gravity, non-local radiation transfer, dust particle evolution with feedback on the gas, etc. A range of artificial viscosity and diffusion schemes can be invoked to deal with supersonic flows. For direct simulations regular viscosity and diffusion is being used. The code is written in well-commented Fortran90.

  6. Modeling Relativistic Jets Using the Athena Hydrodynamics Code

    NASA Astrophysics Data System (ADS)

    Pauls, David; Pollack, Maxwell; Wiita, Paul

    2014-11-01

    We used the Athena hydrodynamics code (Beckwith & Stone 2011) to model early-stage two-dimensional relativistic jets as approximations to the growth of radio-loud active galactic nuclei. We analyzed variability of the radio emission by calculating fluxes from a vertical strip of zones behind a standing shock, as discussed in the accompanying poster. We found the advance speed of the jet bow shock for various input jet velocities and jet-to-ambient density ratios. Faster jets and higher jet densities produce faster shock advances. We investigated the effects of parameters such as the Courant-Friedrichs-Lewy number, the input jet velocity, and the density ratio on the stability of the simulated jet, finding that numerical instabilities grow rapidly when the CFL number is above 0.1. We found that greater jet input velocities and higher density ratios lengthen the time the jet remains stable. We also examined the effects of the boundary conditions, the CFL number, the input jet velocity, the grid resolution, and the density ratio on the premature termination of Athena code. We found that a grid of 1200 by 1000 zones allows the code to run with minimal errors, while still maintaining an adequate resolution. This work is supported by the Mentored Undergraduate Summer Experience program at TCNJ.

  7. Adaptive rezoner in a two-dimensional Lagrangian hydrodynamic code

    SciTech Connect

    Pyun, J.J.; Saltzman, J.S.; Scannapieco, A.J.; Carroll, D.

    1985-01-01

    In an effort to increase spatial resolution without adding additional meshes, an adaptive mesh was incorporated into a two-dimensional Lagrangian hydrodynamics code along with two-dimensional flux corrected (FCT) remapper. The adaptive mesh automatically generates a mesh based on smoothness and orthogonality, and at the same time also tracks physical conditions of interest by focusing mesh points in regions that exhibit those conditions; this is done by defining a weighting function associated with the physical conditions to be tracked. The FCT remapper calculates the net transportive fluxes based on a weighted average of two fluxes computed by a low-order scheme and a high-order scheme. This averaging procedure produces solutions which are conservative and nondiffusive, and maintains positivity. 10 refs., 12 figs.

  8. ALE advantage in hypervelocity impact calculations

    SciTech Connect

    Gerassimenko, M.; Rathkopf, J.

    1998-10-01

    The ALE3D code is used to model experiments relevant to hypervelocity impact lethality, carried out in the 4-5 km/s velocity range. The code is run in the Eulerian and ALE modes. Zoning in the calculations is refined beyond the level found in most lethality calculations, but still short of convergence. The level of zoning refinement that produces equivalent results in uniformly zoned Eulerian calculations and ALE ones utilizing specialized zoning, weighting and relaxation techniques is established. It takes 11 times fewer zones and about 60% as many cycles when ALE capabilities are used. Calculations are compared to experimental results.

  9. An Invariant-Preserving ALE Method for Solids under Extreme Conditions

    SciTech Connect

    Sambasivan, Shiv Kumar; Christon, Mark A

    2012-07-17

    We are proposing a fundamentally new approach to ALE methods for solids undergoing large deformation due to extreme loading conditions. Our approach is based on a physically-motivated and mathematically rigorous construction of the underlying Lagrangian method, vector/tensor reconstruction, remapping, and interface reconstruction. It is transformational because it deviates dramatically from traditionally accepted ALE methods and provides the following set of unique attributes: (1) a three-dimensional, finite volume, cell-centered ALE framework with advanced hypo-/hyper-elasto-plastic constitutive theories for solids; (2) a new physically and mathematically consistent reconstruction method for vector/tensor fields; (3) advanced invariant-preserving remapping algorithm for vector/tensor quantities; (4) moment-of-fluid (MoF) interface reconstruction technique for multi-material problems with solids undergoing large deformations. This work brings together many new concepts, that in combination with emergent cell-centered Lagrangian hydrodynamics methods will produce a cutting-edge ALE capability and define a new state-of-the-art. Many ideas in this work are new, completely unexplored, and hence high risk. The proposed research and the resulting algorithms will be of immediate use in Eulerian, Lagrangian and ALE codes under the ASC program at the lab. In addition, the research on invariant preserving reconstruction/remap of tensor quantities is of direct interest to ongoing CASL and climate modeling efforts at LANL. The application space impacted by this work includes Inertial Confinement Fusion (ICF), Z-pinch, munition-target interactions, geological impact dynamics, shock processing of powders and shaped charges. The ALE framework will also provide a suitable test-bed for rapid development and assessment of hypo-/hyper-elasto-plastic constitutive theories. Today, there are no invariant-preserving ALE algorithms for treating solids with large deformations. Therefore

  10. Description of a parallel, 3D, finite element, hydrodynamics-diffusion code

    SciTech Connect

    Milovich, J L; Prasad, M K; Shestakov, A I

    1999-04-11

    We describe a parallel, 3D, unstructured grid finite element, hydrodynamic diffusion code for inertial confinement fusion (ICF) applications and the ancillary software used to run it. The code system is divided into two entities, a controller and a stand-alone physics code. The code system may reside on different computers; the controller on the user's workstation and the physics code on a supercomputer. The physics code is composed of separate hydrodynamic, equation-of-state, laser energy deposition, heat conduction, and radiation transport packages and is parallelized for distributed memory architectures. For parallelization, a SPMD model is adopted; the domain is decomposed into a disjoint collection of subdomains, one per processing element (PE). The PEs communicate using MPI. The code is used to simulate the hydrodynamic implosion of a spherical bubble.

  11. THEHYCO-3DT: Thermal hydrodynamic code for the 3 dimensional transient calculation of advanced LMFBR core

    SciTech Connect

    Vitruk, S.G.; Korsun, A.S.; Ushakov, P.A.

    1995-09-01

    The multilevel mathematical model of neutron thermal hydrodynamic processes in a passive safety core without assemblies duct walls and appropriate computer code SKETCH, consisted of thermal hydrodynamic module THEHYCO-3DT and neutron one, are described. A new effective discretization technique for energy, momentum and mass conservation equations is applied in hexagonal - z geometry. The model adequacy and applicability are presented. The results of the calculations show that the model and the computer code could be used in conceptual design of advanced reactors.

  12. Neptune: An astrophysical smooth particle hydrodynamics code for massively parallel computer architectures

    NASA Astrophysics Data System (ADS)

    Sandalski, Stou

    Smooth particle hydrodynamics is an efficient method for modeling the dynamics of fluids. It is commonly used to simulate astrophysical processes such as binary mergers. We present a newly developed GPU accelerated smooth particle hydrodynamics code for astrophysical simulations. The code is named neptune after the Roman god of water. It is written in OpenMP parallelized C++ and OpenCL and includes octree based hydrodynamic and gravitational acceleration. The design relies on object-oriented methodologies in order to provide a flexible and modular framework that can be easily extended and modified by the user. Several pre-built scenarios for simulating collisions of polytropes and black-hole accretion are provided. The code is released under the MIT Open Source license and publicly available at http://code.google.com/p/neptune-sph/.

  13. Modeling Three-Dimensional Shock Initiation of PBX 9501 in ALE3D

    SciTech Connect

    Leininger, L; Springer, H K; Mace, J; Mas, E

    2008-07-08

    A recent SMIS (Specific Munitions Impact Scenario) experimental series performed at Los Alamos National Laboratory has provided 3-dimensional shock initiation behavior of the HMX-based heterogeneous high explosive, PBX 9501. A series of finite element impact calculations have been performed in the ALE3D [1] hydrodynamic code and compared to the SMIS results to validate and study code predictions. These SMIS tests used a powder gun to shoot scaled NATO standard fragments into a cylinder of PBX 9501, which has a PMMA case and a steel impact cover. This SMIS real-world shot scenario creates a unique test-bed because (1) SMIS tests facilitate the investigation of 3D Shock to Detonation Transition (SDT) within the context of a considerable suite of diagnostics, and (2) many of the fragments arrive at the impact plate off-center and at an angle of impact. A particular goal of these model validation experiments is to demonstrate the predictive capability of the ALE3D implementation of the Tarver-Lee Ignition and Growth reactive flow model [2] within a fully 3-dimensional regime of SDT. The 3-dimensional Arbitrary Lagrange Eulerian (ALE) hydrodynamic model in ALE3D applies the Ignition and Growth (I&G) reactive flow model with PBX 9501 parameters derived from historical 1-dimensional experimental data. The model includes the off-center and angle of impact variations seen in the experiments. Qualitatively, the ALE3D I&G calculations reproduce observed 'Go/No-Go' 3D Shock to Detonation Transition (SDT) reaction in the explosive, as well as the case expansion recorded by a high-speed optical camera. Quantitatively, the calculations show good agreement with the shock time of arrival at internal and external diagnostic pins. This exercise demonstrates the utility of the Ignition and Growth model applied for the response of heterogeneous high explosives in the SDT regime.

  14. CoCoNuT: General relativistic hydrodynamics code with dynamical space-time evolution

    NASA Astrophysics Data System (ADS)

    Dimmelmeier, Harald; Novak, Jérôme; Cerdá-Durán, Pablo

    2012-02-01

    CoCoNuT is a general relativistic hydrodynamics code with dynamical space-time evolution. The main aim of this numerical code is the study of several astrophysical scenarios in which general relativity can play an important role, namely the collapse of rapidly rotating stellar cores and the evolution of isolated neutron stars. The code has two flavors: CoCoA, the axisymmetric (2D) magnetized version, and CoCoNuT, the 3D non-magnetized version.

  15. Reliable estimation of shock position in shock-capturing compressible hydrodynamics codes

    SciTech Connect

    Nelson, Eric M

    2008-01-01

    The displacement method for estimating shock position in a shock-capturing compressible hydrodynamics code is introduced. Common estimates use simulation data within the captured shock, but the displacement method uses data behind the shock, making the estimate consistent with and as reliable as estimates of material parameters obtained from averages or fits behind the shock. The displacement method is described in the context of a steady shock in a one-dimensional lagrangian hydrodynamics code, and demonstrated on a piston problem and a spherical blast wave.The displacement method's estimates of shock position are much better than common estimates in such applications.

  16. Reactive Flow Modeling of Liquid Explosives via ALE3D/Cheetah Simulations

    SciTech Connect

    Kuo, I W; Bastea, S; Fried, L E

    2010-03-10

    We carried out reactive flow simulations of liquid explosives such as nitromethane using the hydrodynamic code ALE3D coupled with equations of state and reaction kinetics modeled by the thermochemical code Cheetah. The simulation set-up was chosen to mimic cylinder experiments. For pure unconfined nitromethane we find that the failure diameter and detonation velocity dependence on charge diameter are in agreement with available experimental results. Such simulations are likely to be useful for determining detonability and failure behavior for a wide range of experimental conditions and explosive compounds.

  17. CRASH: A BLOCK-ADAPTIVE-MESH CODE FOR RADIATIVE SHOCK HYDRODYNAMICS-IMPLEMENTATION AND VERIFICATION

    SciTech Connect

    Van der Holst, B.; Toth, G.; Sokolov, I. V.; Myra, E. S.; Fryxell, B.; Drake, R. P.; Powell, K. G.; Holloway, J. P.; Stout, Q.; Adams, M. L.; Morel, J. E.; Karni, S.

    2011-06-01

    We describe the Center for Radiative Shock Hydrodynamics (CRASH) code, a block-adaptive-mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with a gray or multi-group method and uses a flux-limited diffusion approximation to recover the free-streaming limit. Electrons and ions are allowed to have different temperatures and we include flux-limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite-volume discretization in either one-, two-, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator-split method is used to solve these equations in three substeps: (1) an explicit step of a shock-capturing hydrodynamic solver; (2) a linear advection of the radiation in frequency-logarithm space; and (3) an implicit solution of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The applications are for astrophysics and laboratory astrophysics. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with a new radiation transfer and heat conduction library and equation-of-state and multi-group opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework.

  18. CRASH: A Block-Adaptive-Mesh Code for Radiative Shock Hydrodynamics

    NASA Astrophysics Data System (ADS)

    van der Holst, B.; Toth, G.; Sokolov, I. V.; Powell, K. G.; Holloway, J. P.; Myra, E. S.; Stout, Q.; Adams, M. L.; Morel, J. E.; Drake, R. P.

    2011-01-01

    We describe the CRASH (Center for Radiative Shock Hydrodynamics) code, a block adaptive mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with the gray or multigroup method and uses a flux limited diffusion approximation to recover the free-streaming limit. The electrons and ions are allowed to have different temperatures and we include a flux limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite volume discretization in either one, two, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator split method is used to solve these equations in three substeps: (1) solve the hydrodynamic equations with shock-capturing schemes, (2) a linear advection of the radiation in frequency-logarithm space, and (3) an implicit solve of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with this new radiation transfer and heat conduction library and equation-of-state and multigroup opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework (SWMF).

  19. PEGAS: Hydrodynamical code for numerical simulation of the gas components of interacting galaxies

    NASA Astrophysics Data System (ADS)

    Kulikov, Igor

    A new hydrodynamical code for numerical simulation of the gravitational gas dynamics is described in the paper. The code is based on the Fluid-in-Cell method with a Godunov-type scheme at the Eulerian stage. The numerical method was adapted for GPU-based supercomputers. The performance of the code is shown by the simulation of the collision of the gas components of two similar disc galaxies in the course of the central collision of the galaxies in the polar direction.

  20. EvoL: the new Padova Tree-SPH parallel code for cosmological simulations. I. Basic code: gravity and hydrodynamics

    NASA Astrophysics Data System (ADS)

    Merlin, E.; Buonomo, U.; Grassi, T.; Piovan, L.; Chiosi, C.

    2010-04-01

    Context. We present the new release of the Padova N-body code for cosmological simulations of galaxy formation and evolution, EvoL. The basic Tree + SPH code is presented and analysed, together with an overview of the software architectures. Aims: EvoL is a flexible parallel Fortran95 code, specifically designed for simulations of cosmological structure formations on cluster, galactic and sub-galactic scales. Methods: EvoL is a fully Lagrangian self-adaptive code, based on the classical oct-tree by Barnes & Hut (1986, Nature, 324, 446) and on the smoothed particle hydrodynamics algorithm (SPH, Lucy 1977, AJ, 82, 1013). It includes special features like adaptive softening lengths with correcting extra-terms, and modern formulations of SPH and artificial viscosity. It is designed to be run in parallel on multiple CPUs to optimise the performance and save computational time. Results: We describe the code in detail, and present the results of a number of standard hydrodynamical tests.

  1. Simulating hypervelocity impact effects on structures using the smoothed particle hydrodynamics code MAGI

    NASA Technical Reports Server (NTRS)

    Libersky, Larry; Allahdadi, Firooz A.; Carney, Theodore C.

    1992-01-01

    Analysis of interaction occurring between space debris and orbiting structures is of great interest to the planning and survivability of space assets. Computer simulation of the impact events using hydrodynamic codes can provide some understanding of the processes but the problems involved with this fundamental approach are formidable. First, any realistic simulation is necessarily three-dimensional, e.g., the impact and breakup of a satellite. Second, the thickness of important components such as satellite skins or bumper shields are small with respect to the dimension of the structure as a whole, presenting severe zoning problems for codes. Thirdly, the debris cloud produced by the primary impact will yield many secondary impacts which will contribute to the damage and possible breakup of the structure. The problem was approached by choosing a relatively new computational technique that has virtues peculiar to space impacts. The method is called Smoothed Particle Hydrodynamics.

  2. AstroBEAR: Adaptive Mesh Refinement Code for Ideal Hydrodynamics & Magnetohydrodynamics

    NASA Astrophysics Data System (ADS)

    Cunningham, Andrew J.; Frank, Adam; Varniere, Peggy; Mitran, Sorin; Jones, Thomas W.

    2011-04-01

    AstroBEAR is a modular hydrodynamic & magnetohydrodynamic code environment designed for a variety of astrophysical applications. It uses the BEARCLAW package, a multidimensional, Eulerian computational code used to solve hyperbolic systems of equations. AstroBEAR allows adaptive-mesh-refinment (AMR) simulations in 2, 2.5 (i.e., cylindrical), and 3 dimensions, in either cartesian or curvilinear coordinates. Parallel applications are supported through the MPI architecture. AstroBEAR is written in Fortran 90/95 using standard libraries. AstroBEAR supports hydrodynamic (HD) and magnetohydrodynamic (MHD) applications using a variety of spatial and temporal methods. MHD simulations are kept divergence-free via the constrained transport (CT) methods of Balsara & Spicer. Three different equation of state environments are available: ideal gas, gas with differing isentropic γ, and the analytic Thomas-Fermi formulation of A.R. Bell [2]. Current work is being done to develop a more advanced real gas equation of state.

  3. ALE3D Statistical Hot Spot Model Results for LX-17

    SciTech Connect

    Nichols, A L III; Tarver, C M; McGuire, E M

    2003-07-11

    The Statistical Hot Spot shock initiation and detonation reactive flow model for solid explosives in the ALE3D hydrodynamic computer code provides physically realistic descriptions of: hot spot formation; ignition (or failure to ignite); growth of reaction (or failure to grow) into surrounding particles; coalescence of reacting hot spots; transition to detonation; and self-sustaining detonation. The model has already successfully modeled several processes in HMX-based explosives, such as shock desensitization, that can not predicted by other reactive flow models. In this paper, the Statistical Hot Spot model is applied to experimental embedded gauge data on the insensitive triaminotrintrobenzene (TATB) based explosive LX-17.

  4. Simulations of implosions with a 3D, parallel, unstructured-grid, radiation-hydrodynamics code

    SciTech Connect

    Kaiser, T B; Milovich, J L; Prasad, M K; Rathkopf, J; Shestakov, A I

    1998-12-28

    An unstructured-grid, radiation-hydrodynamics code is used to simulate implosions. Although most of the problems are spherically symmetric, they are run on 3D, unstructured grids in order to test the code's ability to maintain spherical symmetry of the converging waves. Three problems, of increasing complexity, are presented. In the first, a cold, spherical, ideal gas bubble is imploded by an enclosing high pressure source. For the second, we add non-linear heat conduction and drive the implosion with twelve laser beams centered on the vertices of an icosahedron. In the third problem, a NIF capsule is driven with a Planckian radiation source.

  5. Hydrodynamic Optimization Method and Design Code for Stall-Regulated Hydrokinetic Turbine Rotors

    SciTech Connect

    Sale, D.; Jonkman, J.; Musial, W.

    2009-08-01

    This report describes the adaptation of a wind turbine performance code for use in the development of a general use design code and optimization method for stall-regulated horizontal-axis hydrokinetic turbine rotors. This rotor optimization code couples a modern genetic algorithm and blade-element momentum performance code in a user-friendly graphical user interface (GUI) that allows for rapid and intuitive design of optimal stall-regulated rotors. This optimization method calculates the optimal chord, twist, and hydrofoil distributions which maximize the hydrodynamic efficiency and ensure that the rotor produces an ideal power curve and avoids cavitation. Optimizing a rotor for maximum efficiency does not necessarily create a turbine with the lowest cost of energy, but maximizing the efficiency is an excellent criterion to use as a first pass in the design process. To test the capabilities of this optimization method, two conceptual rotors were designed which successfully met the design objectives.

  6. A 3+1 dimensional viscous hydrodynamic code for relativistic heavy ion collisions

    NASA Astrophysics Data System (ADS)

    Karpenko, Iu.; Huovinen, P.; Bleicher, M.

    2014-11-01

    We describe the details of 3+1 dimensional relativistic hydrodynamic code for the simulations of quark-gluon/hadron matter expansion in ultra-relativistic heavy ion collisions. The code solves the equations of relativistic viscous hydrodynamics in the Israel-Stewart framework. With the help of ideal-viscous splitting, we keep the ability to solve the equations of ideal hydrodynamics in the limit of zero viscosities using a Godunov-type algorithm. Milne coordinates are used to treat the predominant expansion in longitudinal (beam) direction effectively. The results are successfully tested against known analytical relativistic inviscid and viscous solutions, as well as against existing 2+1D relativistic viscous code. Catalogue identifier: AETZ_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AETZ_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 13 825 No. of bytes in distributed program, including test data, etc.: 92 750 Distribution format: tar.gz Programming language: C++. Computer: any with a C++ compiler and the CERN ROOT libraries. Operating system: tested on GNU/Linux Ubuntu 12.04 x64 (gcc 4.6.3), GNU/Linux Ubuntu 13.10 (gcc 4.8.2), Red Hat Linux 6 (gcc 4.4.7). RAM: scales with the number of cells in hydrodynamic grid; 1900 Mbytes for 3D 160×160×100 grid. Classification: 1.5, 4.3, 12. External routines: CERN ROOT (http://root.cern.ch), Gnuplot (http://www.gnuplot.info/) for plotting the results. Nature of problem: relativistic hydrodynamical description of the 3-dimensional quark-gluon/hadron matter expansion in ultra-relativistic heavy ion collisions. Solution method: finite volume Godunov-type method. Running time: scales with the number of hydrodynamic cells; typical running times on Intel(R) Core(TM) i7-3770 CPU @ 3.40 GHz, single thread mode, 160

  7. A smooth particle hydrodynamics code to model collisions between solid, self-gravitating objects

    NASA Astrophysics Data System (ADS)

    Schäfer, C.; Riecker, S.; Maindl, T. I.; Speith, R.; Scherrer, S.; Kley, W.

    2016-05-01

    Context. Modern graphics processing units (GPUs) lead to a major increase in the performance of the computation of astrophysical simulations. Owing to the different nature of GPU architecture compared to traditional central processing units (CPUs) such as x86 architecture, existing numerical codes cannot be easily migrated to run on GPU. Here, we present a new implementation of the numerical method smooth particle hydrodynamics (SPH) using CUDA and the first astrophysical application of the new code: the collision between Ceres-sized objects. Aims: The new code allows for a tremendous increase in speed of astrophysical simulations with SPH and self-gravity at low costs for new hardware. Methods: We have implemented the SPH equations to model gas, liquids and elastic, and plastic solid bodies and added a fragmentation model for brittle materials. Self-gravity may be optionally included in the simulations and is treated by the use of a Barnes-Hut tree. Results: We find an impressive performance gain using NVIDIA consumer devices compared to our existing OpenMP code. The new code is freely available to the community upon request. If you are interested in our CUDA SPH code miluphCUDA, please write an email to Christoph Schäfer. miluphCUDA is the CUDA port of miluph. miluph is pronounced [maßl2v]. We do not support the use of the code for military purposes.

  8. A smooth particle hydrodynamics code to model collisions between solid, self-gravitating objects

    NASA Astrophysics Data System (ADS)

    Schäfer, C.; Riecker, S.; Maindl, T. I.; Speith, R.; Scherrer, S.; Kley, W.

    2016-04-01

    Context. Modern graphics processing units (GPUs) lead to a major increase in the performance of the computation of astrophysical simulations. Owing to the different nature of GPU architecture compared to traditional central processing units (CPUs) such as x86 architecture, existing numerical codes cannot be easily migrated to run on GPU. Here, we present a new implementation of the numerical method smooth particle hydrodynamics (SPH) using CUDA and the first astrophysical application of the new code: the collision between Ceres-sized objects. Aims: The new code allows for a tremendous increase in speed of astrophysical simulations with SPH and self-gravity at low costs for new hardware. Methods: We have implemented the SPH equations to model gas, liquids and elastic, and plastic solid bodies and added a fragmentation model for brittle materials. Self-gravity may be optionally included in the simulations and is treated by the use of a Barnes-Hut tree. Results: We find an impressive performance gain using NVIDIA consumer devices compared to our existing OpenMP code. The new code is freely available to the community upon request. If you are interested in our CUDA SPH code miluphCUDA, please write an email to Christoph Schäfer. miluphCUDA is the CUDA port of miluph. miluph is pronounced [maßl2v]. We do not support the use of the code for military purposes.

  9. Simulation of a ceramic impact experiment using the SPHINX smooth particle hydrodynamics code

    SciTech Connect

    Mandell, D.A.; Wingate, C.A.; Schwalbe, L.A.

    1996-08-01

    We are developing statistically based, brittle-fracture models and are implementing them into hydrocodes that can be used for designing systems with components of ceramics, glass, and/or other brittle materials. Because of the advantages it has simulating fracture, we are working primarily with the smooth particle hydrodynamics code SPHINX. We describe a new brittle fracture model that we have implemented into SPHINX, and we discuss how the model differs from others. To illustrate the code`s current capability, we simulate an experiment in which a tungsten rod strikes a target of heavily confined ceramic. Simulations in 3D at relatively coarse resolution yield poor results. However, 2D plane-strain approximations to the test produce crack patterns that are strikingly similar to the data, although the fracture model needs further refinement to match some of the finer details. We conclude with an outline of plans for continuing research and development.

  10. Investigating the Magnetorotational Instability with Dedalus, and Open-Souce Hydrodynamics Code

    SciTech Connect

    Burns, Keaton J; /UC, Berkeley, aff SLAC

    2012-08-31

    The magnetorotational instability is a fluid instability that causes the onset of turbulence in discs with poloidal magnetic fields. It is believed to be an important mechanism in the physics of accretion discs, namely in its ability to transport angular momentum outward. A similar instability arising in systems with a helical magnetic field may be easier to produce in laboratory experiments using liquid sodium, but the applicability of this phenomenon to astrophysical discs is unclear. To explore and compare the properties of these standard and helical magnetorotational instabilities (MRI and HRMI, respectively), magnetohydrodynamic (MHD) capabilities were added to Dedalus, an open-source hydrodynamics simulator. Dedalus is a Python-based pseudospectral code that uses external libraries and parallelization with the goal of achieving speeds competitive with codes implemented in lower-level languages. This paper will outline the MHD equations as implemented in Dedalus, the steps taken to improve the performance of the code, and the status of MRI investigations using Dedalus.

  11. Prediction of material strength and fracture of glass using the SPHINX smooth particle hydrodynamics code

    SciTech Connect

    Mandell, D.A.; Wingate, C.A.

    1994-08-01

    The design of many military devices involves numerical predictions of the material strength and fracture of brittle materials. The materials of interest include ceramics, that are used in armor packages; glass that is used in truck and jeep windshields and in helicopters; and rock and concrete that are used in underground bunkers. As part of a program to develop advanced hydrocode design tools, the authors have implemented a brittle fracture model for glass into the SPHINX smooth particle hydrodynamics code. The authors have evaluated this model and the code by predicting data from one-dimensional flyer plate impacts into glass, and data from tungsten rods impacting glass. Since fractured glass properties, which are needed in the model, are not available, the authors did sensitivity studies of these properties, as well as sensitivity studies to determine the number of particles needed in the calculations. The numerical results are in good agreement with the data.

  12. Prediction of material strength and fracture of brittle materials using the SPHINX smooth particle hydrodynamics code

    SciTech Connect

    Mandell, D.A.; Wingate, C.A.; Stellingwwerf, R.F.

    1995-12-31

    The design of many devices involves numerical predictions of the material strength and fracture of brittle materials. The materials of interest include ceramics that are used in armor packages; glass that is used in windshields; and rock and concrete that are used in oil wells. As part of a program to develop advanced hydrocode design tools, the authors have implemented a brittle fracture model for glass into the SPHINX smooth particle hydrodynamics code. The authors have evaluated this model and the code by predicting data from tungsten rods impacting glass. Since fractured glass properties, which are needed in the model, are not available, they did sensitivity studies of these properties, as well as sensitivity studies to determine the number of particles needed in the calculations. The numerical results are in good agreement with the data.

  13. CASTRO: A New AMR Radiation-Hydrodynamics Code for Compressible Astrophysics

    NASA Astrophysics Data System (ADS)

    Almgren, Ann; Bell, J.; Day, M.; Howell, L.; Joggerst, C.; Myra, E.; Nordhaus, J.; Singer, M.; Zingale, M.

    2010-01-01

    CASTRO is a new, multi-dimensional, Eulerian AMR radiation-hydrodynamics code designed for astrophysical simulations. The code includes routines for various equations of state and nuclear reaction networks, and can be used with Cartesian, cylindrical or spherical coordinates. Time integration of the hydrodynamics equations is based on a higher-order, unsplit Godunov scheme. Self-gravity can be calculated on the adaptive hierarchy using a simple monopole approximation or a full Poisson solve for the potential. CASTRO includes gray and multigroup radiation diffusion. Multi-species neutrino diffusion for supernovae is nearing completion. The adaptive framework of CASTRO is based on an time-evolving hierarchy of nested rectangular grids with refinement in both space and time; the entire implementation is designed to run on thousands of processors. We describe in more detail how CASTRO is implemented and can be used for a number of different simulations. Our initial applications of CASTRO include Type Ia and Type II supernovae. This work has been supported by the SciDAC Program of the DOE Office of Mathematics, Information, and Computational Sciences under contracts No. DE-AC02-05CH11231 (LBNL), No. DE-FC02-06ER41438 (UCSC), and No. DE-AC52-07NA27344 (LLNL); and LLNL contracts B582735 and B574691(Stony Brook). Calculations shown were carried out on Franklin at NERSC.

  14. A new multidimensional, energy-dependent two-moment transport code for neutrino-hydrodynamics

    NASA Astrophysics Data System (ADS)

    Just, O.; Obergaulinger, M.; Janka, H.-T.

    2015-11-01

    We present the new code ALCAR developed to model multidimensional, multienergy-group neutrino transport in the context of supernovae and neutron-star mergers. The algorithm solves the evolution equations of the zeroth- and first-order angular moments of the specific intensity, supplemented by an algebraic relation for the second-moment tensor to close the system. The scheme takes into account frame-dependent effects of the order O(v/c) as well as the most important types of neutrino interactions. The transport scheme is significantly more efficient than a multidimensional solver of the Boltzmann equation, while it is more accurate and consistent than the flux-limited diffusion method. The finite-volume discretization of the essentially hyperbolic system of moment equations employs methods well-known from hydrodynamics. For the time integration of the potentially stiff moment equations we employ a scheme in which only the local source terms are treated implicitly, while the advection terms are kept explicit, thereby allowing for an efficient computational parallelization of the algorithm. We investigate various problem set-ups in one and two dimensions to verify the implementation and to test the quality of the algebraic closure scheme. In our most detailed test, we compare a fully dynamic, one-dimensional core-collapse simulation with two published calculations performed with well-known Boltzmann-type neutrino-hydrodynamics codes and we find very satisfactory agreement.

  15. Modeling The Shock Initiation of PBX-9501 in ALE3D

    SciTech Connect

    Leininger, L; Springer, H K; Mace, J; Mas, E

    2008-07-01

    The SMIS (Specific Munitions Impact Scenario) experimental series performed at Los Alamos National Laboratory has determined the 3-dimensional shock initiation behavior of the HMX-based heterogeneous high explosive, PBX 9501. A series of finite element impact calculations have been performed in the ALE3D [1] hydrodynamic code and compared to the SMIS results to validate the code predictions. The SMIS tests use a powder gun to shoot scaled NATO standard fragments at a cylinder of PBX 9501, which has a PMMA case and a steel impact cover. The SMIS real-world shot scenario creates a unique test-bed because many of the fragments arrive at the impact plate off-center and at an angle of impact. The goal of this model validation experiments is to demonstrate the predictive capability of the Tarver-Lee Ignition and Growth (I&G) reactive flow model [2] in this fully 3-dimensional regime of Shock to Detonation Transition (SDT). The 3-dimensional Arbitrary Lagrange Eulerian hydrodynamic model in ALE3D applies the Ignition and Growth (I&G) reactive flow model with PBX 9501 parameters derived from historical 1-dimensional experimental data. The model includes the off-center and angle of impact variations seen in the experiments. Qualitatively, the ALE3D I&G calculations accurately reproduce the 'Go/No-Go' threshold of the Shock to Detonation Transition (SDT) reaction in the explosive, as well as the case expansion recorded by a high-speed optical camera. Quantitatively, the calculations show good agreement with the shock time of arrival at internal and external diagnostic pins. This exercise demonstrates the utility of the Ignition and Growth model applied in a predictive fashion for the response of heterogeneous high explosives in the SDT regime.

  16. Comparison among five hydrodynamic codes with a diverging-converging nozzle experiment

    SciTech Connect

    L. E. Thode; M. C. Cline; B. G. DeVolder; M. S. Sahota; D. K. Zerkle

    1999-09-01

    A realistic open-cycle gas-core nuclear rocket simulation model must be capable of a self-consistent nozzle calculation in conjunction with coupled radiation and neutron transport in three spatial dimensions. As part of the development effort for such a model, five hydrodynamic codes were used to compare with a converging-diverging nozzle experiment. The codes used in the comparison are CHAD, FLUENT, KIVA2, RAMPANT, and VNAP2. Solution accuracy as a function of mesh size is important because, in the near term, a practical three-dimensional simulation model will require rather coarse zoning across the nozzle throat. In the study, four different grids were considered. (1) coarse, radially uniform grid, (2) coarse, radially nonuniform grid, (3) fine, radially uniform grid, and (4) fine, radially nonuniform grid. The study involves code verification, not prediction. In other words, the authors know the solution they want to match, so they can change methods and/or modify an algorithm to best match this class of problem. In this context, it was necessary to use the higher-order methods in both FLUENT and RAMPANT. In addition, KIVA2 required a modification that allows significantly more accurate solutions for a converging-diverging nozzle. From a predictive point of view, code accuracy with no tuning is an important result. The most accurate codes on a coarse grid, CHAD and VNAP2, did not require any tuning. Their main comparison among the codes was the radial dependence of the Mach number across the nozzle throat. All five codes yielded a very similar solution with fine, radially uniform and radially nonuniform grids. However, the codes yielded significantly different solutions with coarse, radially uniform and radially nonuniform grids. For all the codes, radially nonuniform zoning across the throat significantly increased solution accuracy with a coarse mesh. None of the codes agrees in detail with the weak shock located downstream of the nozzle throat, but all the

  17. Evaluation of a Cray performance tool using a large hydrodynamics code

    SciTech Connect

    Lord, K.M.; Simmons, M.L.

    1992-06-01

    This paper will discuss one of these automatic tools that has been developed recently by Cray Research, Inc. for use on its parallel supercomputer. The tool is called ATEXPERT; when used in conjunction with the Cray Fortran compiling system, CF77, it produces a parallelized version of a code based on loop-level parallelism, plus information to enable the programmer to optimize the parallelized code and improve performance. The information obtained through the use of the tool is presented in an easy-to-read graphical format, making the digestion of such a large quantity of data relatively easy and thus, improving programmer productivity. In this paper we address the issues that we found when the took a large Los Alamos hydrodynamics code, PUEBLO, that was highly vectorizable, but not parallelized, and using ATEXPERT proceeded to parallelize it. We show that through the advice of ATEXPERT, bottlenecks in the code can be found, leading to improved performance. We also show the dependence of performance on problem size, and finally, we contrast the speedup predicted by ATEXPERT with that measured on a dedicated eight-processor Y-MP.

  18. MULTI2D - a computer code for two-dimensional radiation hydrodynamics

    NASA Astrophysics Data System (ADS)

    Ramis, R.; Meyer-ter-Vehn, J.; Ramírez, J.

    2009-06-01

    Simulation of radiation hydrodynamics in two spatial dimensions is developed, having in mind, in particular, target design for indirectly driven inertial confinement energy (IFE) and the interpretation of related experiments. Intense radiation pulses by laser or particle beams heat high-Z target configurations of different geometries and lead to a regime which is optically thick in some regions and optically thin in others. A diffusion description is inadequate in this situation. A new numerical code has been developed which describes hydrodynamics in two spatial dimensions (cylindrical R-Z geometry) and radiation transport along rays in three dimensions with the 4 π solid angle discretized in direction. Matter moves on a non-structured mesh composed of trilateral and quadrilateral elements. Radiation flux of a given direction enters on two (one) sides of a triangle and leaves on the opposite side(s) in proportion to the viewing angles depending on the geometry. This scheme allows to propagate sharply edged beams without ray tracing, though at the price of some lateral diffusion. The algorithm treats correctly both the optically thin and optically thick regimes. A symmetric semi-implicit (SSI) method is used to guarantee numerical stability. Program summaryProgram title: MULTI2D Catalogue identifier: AECV_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AECV_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 151 098 No. of bytes in distributed program, including test data, etc.: 889 622 Distribution format: tar.gz Programming language: C Computer: PC (32 bits architecture) Operating system: Linux/Unix RAM: 2 Mbytes Word size: 32 bits Classification: 19.7 External routines: X-window standard library (libX11.so) and corresponding heading files (X11/*.h) are

  19. Three-dimensional hydrodynamic Bondi-Hoyle accretion. 1: Code validation and stationary accretors

    NASA Technical Reports Server (NTRS)

    Ruffert, Maximilian

    1994-01-01

    We investigate the hydrodynamics of three-dimensional classical Bondi-Hoyle accretion. Totally absorbing stationary spheres of varying sizes (from 10.0 down to 0.02 Bondi radii) accrete matter from a homogeneous and slightly perturbed medium, which is taken to be an ideal gas (gamma = 5/3 or 1.2). To accommodate the long-range gravitational forces, the extent of the computational volume is typically a factor of 100 larger than the radius of the accretor. We compare the numerical mass accretion rates with the theoretical predictions of Bondi, to assess the validity of the code. The hydrodynamics is modeled by the piecewise parabolic method. No energy sources (nuclear burning) or sinks (radiation, conduction) are included. The resolution in the vicinity of the accretor is increased by multiply nesting several (6-8) grids around the stationary sphere, each finer grid being a factor of 2 smaller spatially than the next coarser grid. This allows us to include a coarse model for the surface of the accretor (vacuum sphere) on the finest grid while at the same time evolving the gas on the coarser grids. The accretion rates derived numerically are in in very good agreement (to about 10% over several orders of magnitude) with the values given by Bondi for a stationary accretor within a hydrodynamic medium. However, the equations have to be changed in order to include the finite size of the accretor (in some cases very large compared to the sonic point or even to the Bondi radius).

  20. Introducing Flow-er: a Hydrodynamics Code for Relativistic and Newtonian Flows

    NASA Astrophysics Data System (ADS)

    Motl, P. M.; Tohline, J. E.; Lehner, L.

    2005-12-01

    We present a new numerical code (Flow-er) for calculating astrophysical flows in 1, 2 or 3 dimensions. We have implemented equations appropriate for the treatment of Newtonian gravity as well as the general relativistic formalism to treat flows with either a static or dynamic metric. The heart of the code is the recent non-oscillatory central difference scheme by Kurganov and Tadmor (2000; hereafter KT). With this technique, we do not require a characteristic decomposition or the solution of Riemann problems that are required by most other high resolution, shock capturing techniques. Furthermore, the KT scheme naturally incorporates the Method of Lines, allowing considerable flexibility in the choice of time integrators. We have implemented several interpolation kernels that allow us to choose the spatial accuracy of an evolution. Through the Cactus framework or independent code, Flow-er serves as a driver for the hydrodynamical portion of a simulation utilizing adaptive mesh refinement or on a unigrid. In addition to describing Flow-er, we present results from several test problems. We are pleased to acknowledge support for this work from the National Science Foundation through grants PHY-0326311 and AST-0407070.

  1. Measuring Extinction with ALE

    NASA Astrophysics Data System (ADS)

    Zimmer, Peter C.; McGraw, J. T.; Gimmestad, G. G.; Roberts, D.; Stewart, J.; Smith, J.; Fitch, J.

    2007-12-01

    ALE (Astronomical LIDAR for Extinction) is deployed at the University of New Mexico's (UNM) Campus Observatory in Albuquerque, NM. It has begun a year-long testing phase prior deployment at McDonald Observatory in support of the CCD/Transit Instrument II (CTI-II). ALE is designed to produce a high-precision measurement of atmospheric absorption and scattering above the observatory site every ten minutes of every moderately clear night. LIDAR (LIght Detection And Ranging) is the VIS/UV/IR analog of radar, using a laser, telescope and time-gated photodetector instead of a radio transmitter, dish and receiver. In the case of ALE -- an elastic backscatter LIDAR -- 20ns-long, eye-safe laser pulses are launched 2500 times per second from a 0.32m transmitting telescope co-mounted with a 50mm short-range receiver on an alt-az mounted 0.67m long-range receiver. Photons from the laser pulse are scattered and absorbed as the pulse propagates through the atmosphere, a portion of which are scattered into the field of view of the short- and long-range receiver telescopes and detected by a photomultiplier. The properties of a given volume of atmosphere along the LIDAR path are inferred from both the altitude-resolved backscatter signal as well as the attenuation of backscatter signal from altitudes above it. We present ALE profiles from the commissioning phase and demonstrate some of the astronomically interesting atmospheric information that can be gleaned from these data, including, but not limited to, total line-of-sight extinction. This project is funded by NSF Grant 0421087.

  2. Hydrodynamic code calculations of airblast for an explosive test in a shallow underground storage magazine

    NASA Astrophysics Data System (ADS)

    Kennedy, Lynn W.; Schneider, Kenneth D.

    1990-07-01

    A large-sclae test of the detonation of 20,000 kilograms of high explosive inside a shallow underground tunnel/chamber complex, simulating an ammunition storage magazine, was carried out in August, 1988, at the Naval Weapons Center, China Lake, California. The test was jointly sponsored by the U.S. Department of Defense Explosives Safety Board; the Safety Services Organisation of the Ministry of Defence, United Kingdom; and the Norwegian Defence Construction Service. The overall objective of the test was to determine the hazardous effects (debris, airblast, and ground motion) produced in this configuration. Actual storage magazines have considerably more overburden and are expected to contain and accidental detonation. The test configuration, on the other hand, was expected to rupture, and to scatter a significant amount of rocks, dirt and debris. Among the observations and measurements made in this test was study of airblast propagation within the storage chamber, in the access tunnel, and outside, on the tunnel ramp, prior to overburden venting. The results of these observations are being used to evaluate and validate current quantity-distance standards for the underground storage of munitions near inabited structures. As part of the prediction effort for this test, to assist with transducer ranging in the access tunnel and with post-test interpretation of the results, S-CUBED was asked to perform two-dimensional inviscid hydrodynamic code calculations of the explosive detonation and subsequent blastwave propagation in the interior chamber and access tunnel. This was accomplished using the S-CUBED Hydrodynamic Advanced Research Code (SHARC). In this paper, details of the calculations configuration will be presented. These will be compared to the actual as-built internal configuration of the tunnel/chamber complex. Results from the calculations, including contour plots and airblast waveforms, will be shown. The latter will be compared with experimental records

  3. Introducing Flow-er: a Hydrodynamics Code for Relativistic and Newtonian Flows

    NASA Astrophysics Data System (ADS)

    Motl, Patrick; Olabarrieta, Ignacio; Tohline, Joel

    2006-04-01

    We present a new numerical code (Flow-er) for calculating astrophysical flows in 1, 2 or 3 dimensions. We have implemented equations appropriate for the treatment of Newtonian gravity as well as the general relativistic formalism to treat flows with either a static or dynamic metric. The heart of the code is the recent non-oscillatory central difference scheme by Kurganov and Tadmor (2000). With this technique, we do not require a characteristic decomposition or the solution of Riemann problems that are required by most other high resolution, shock capturing techniques. Furthermore, the KT scheme naturally incorporates the Method of Lines, allowing considerable flexibility in the choice of time integrators. We have implemented several interpolation kernels that allow us to choose the spatial accuracy of an evolution. Flow-er has been tested against an independent implementation of the KT scheme to solve the relativistic equations in 1d - which we also describe. Flow-er can serve as the driver for the hydrodynamical portion of a simulation utilizing adaptive mesh refinement or on a unigrid. In addition to describing Flow-er, we present results from several test problems.

  4. FORCE2: A state-of-the-art two-phase code for hydrodynamic calculations

    SciTech Connect

    Ding, Jianmin; Lyczkowski, R.W.; Burge, S.W.

    1993-02-01

    A three-dimensional computer code for two-phase flow named FORCE2 has been developed by Babcock and Wilcox (B & W) in close collaboration with Argonne National Laboratory (ANL). FORCE2 is capable of both transient as well as steady-state simulations. This Cartesian coordinates computer program is a finite control volume, industrial grade and quality embodiment of the pilot-scale FLUFIX/MOD2 code and contains features such as three-dimensional blockages, volume and surface porosities to account for various obstructions in the flow field, and distributed resistance modeling to account for pressure drops caused by baffles, distributor plates and large tube banks. Recently computed results demonstrated the significance of and necessity for three-dimensional models of hydrodynamics and erosion. This paper describes the process whereby ANL`s pilot-scale FLUFIX/MOD2 models and numerics were implemented into FORCE2. A description of the quality control to assess the accuracy of the new code and the validation using some of the measured data from Illinois Institute of Technology (UT) and the University of Illinois at Urbana-Champaign (UIUC) are given. It is envisioned that one day, FORCE2 with additional modules such as radiation heat transfer, combustion kinetics and multi-solids together with user-friendly pre- and post-processor software and tailored for massively parallel multiprocessor shared memory computational platforms will be used by industry and researchers to assist in reducing and/or eliminating the environmental and economic barriers which limit full consideration of coal, shale and biomass as energy sources, to retain energy security, and to remediate waste and ecological problems.

  5. FORCE2: A state-of-the-art two-phase code for hydrodynamic calculations

    SciTech Connect

    Ding, Jianmin; Lyczkowski, R.W. ); Burge, S.W. . Research Center)

    1993-02-01

    A three-dimensional computer code for two-phase flow named FORCE2 has been developed by Babcock and Wilcox (B W) in close collaboration with Argonne National Laboratory (ANL). FORCE2 is capable of both transient as well as steady-state simulations. This Cartesian coordinates computer program is a finite control volume, industrial grade and quality embodiment of the pilot-scale FLUFIX/MOD2 code and contains features such as three-dimensional blockages, volume and surface porosities to account for various obstructions in the flow field, and distributed resistance modeling to account for pressure drops caused by baffles, distributor plates and large tube banks. Recently computed results demonstrated the significance of and necessity for three-dimensional models of hydrodynamics and erosion. This paper describes the process whereby ANL's pilot-scale FLUFIX/MOD2 models and numerics were implemented into FORCE2. A description of the quality control to assess the accuracy of the new code and the validation using some of the measured data from Illinois Institute of Technology (UT) and the University of Illinois at Urbana-Champaign (UIUC) are given. It is envisioned that one day, FORCE2 with additional modules such as radiation heat transfer, combustion kinetics and multi-solids together with user-friendly pre- and post-processor software and tailored for massively parallel multiprocessor shared memory computational platforms will be used by industry and researchers to assist in reducing and/or eliminating the environmental and economic barriers which limit full consideration of coal, shale and biomass as energy sources, to retain energy security, and to remediate waste and ecological problems.

  6. Multi-Material ALE with AMR for Modeling Hot Plasmas and Cold Fragmenting Materials

    NASA Astrophysics Data System (ADS)

    Alice, Koniges; Nathan, Masters; Aaron, Fisher; David, Eder; Wangyi, Liu; Robert, Anderson; David, Benson; Andrea, Bertozzi

    2015-02-01

    We have developed a new 3D multi-physics multi-material code, ALE-AMR, which combines Arbitrary Lagrangian Eulerian (ALE) hydrodynamics with Adaptive Mesh Refinement (AMR) to connect the continuum to the microstructural regimes. The code is unique in its ability to model hot radiating plasmas and cold fragmenting solids. New numerical techniques were developed for many of the physics packages to work efficiently on a dynamically moving and adapting mesh. We use interface reconstruction based on volume fractions of the material components within mixed zones and reconstruct interfaces as needed. This interface reconstruction model is also used for void coalescence and fragmentation. A flexible strength/failure framework allows for pluggable material models, which may require material history arrays to determine the level of accumulated damage or the evolving yield stress in J2 plasticity models. For some applications laser rays are propagating through a virtual composite mesh consisting of the finest resolution representation of the modeled space. A new 2nd order accurate diffusion solver has been implemented for the thermal conduction and radiation transport packages. One application area is the modeling of laser/target effects including debris/shrapnel generation. Other application areas include warm dense matter, EUV lithography, and material wall interactions for fusion devices.

  7. Kull ALE: II. Grid Motion on Unstructured Arbitrary Polyhedral Meshes

    SciTech Connect

    Anninos, P

    2002-02-11

    Several classes of mesh motion algorithms are presented for the remap phase of unstructured mesh ALE codes. The methods range from local shape optimization procedures to more complex variational minimization methods applied to arbitrary unstructured polyhedral meshes necessary for the Kull code.

  8. Global Time Dependent Solutions of Stochastically Driven Standard Accretion Disks: Development of Hydrodynamical Code

    NASA Astrophysics Data System (ADS)

    Wani, Naveel; Maqbool, Bari; Iqbal, Naseer; Misra, Ranjeev

    2016-07-01

    X-ray binaries and AGNs are powered by accretion discs around compact objects, where the x-rays are emitted from the inner regions and uv emission arise from the relatively cooler outer parts. There has been an increasing evidence that the variability of the x-rays in different timescales is caused by stochastic fluctuations in the accretion disc at different radii. These fluctuations although arise in the outer parts of the disc but propagate inwards to give rise to x-ray variability and hence provides a natural connection between the x-ray and uv variability. There are analytical expressions to qualitatively understand the effect of these stochastic variabilities, but quantitative predictions are only possible by a detailed hydrodynamical study of the global time dependent solution of standard accretion disc. We have developed numerical efficient code (to incorporate all these effects), which considers gas pressure dominated solutions and stochastic fluctuations with the inclusion of boundary effect of the last stable orbit.

  9. Implementation of the Turn Function Method in a three-dimensional, parallelized hydrodynamics code

    NASA Astrophysics Data System (ADS)

    Orourke, P. J.; Fairfield, M. S.

    1992-08-01

    The implementation of the Turn Function Method in KIVA-F90, a version of the KIVA computer program written in the FORTRAN 90 programming language that is used on some massively parallel computers is described. The Turn Function Method solves both linear momentum and vorticity equations in numerical calculations of compressible fluid flow. Solving a vorticity equation allows vorticity to be both conserved and transported more accurately than in traditional methods for computing compressible flow. This first implementation of the Turn Function Method in a three-dimensional hydrodynamics code involved some modification of the original method and some numerical difference approximations. In particular, a penalty method is used to keep the divergence of the computed vorticity field close to zero. Difference operators are also defined in such a way that the finite difference analog of del(del x u) = 0 is exactly satisfied. Three example problems show the increased computational cost and the accuracy to be gained by using the Turn Function Method in calculations of flows with rotational motion. Use of the Method can increase by 60 percent the computational times of the Euler equation solver in KIVA-F90, but it is concluded that this increased cost is justified by the increased accuracy.

  10. Implementation of a simple model for linear and nonlinear mixing at unstable fluid interfaces in hydrodynamics codes

    SciTech Connect

    Ramshaw, J D

    2000-10-01

    A simple model was recently described for predicting the time evolution of the width of the mixing layer at an unstable fluid interface [J. D. Ramshaw, Phys. Rev. E 58, 5834 (1998); ibid. 61, 5339 (2000)]. The ordinary differential equations of this model have been heuristically generalized into partial differential equations suitable for implementation in multicomponent hydrodynamics codes. The central ingredient in this generalization is a nun-diffusional expression for the species mass fluxes. These fluxes describe the relative motion of the species, and thereby determine the local mixing rate and spatial distribution of mixed fluid as a function of time. The generalized model has been implemented in a two-dimensional hydrodynamics code. The model equations and implementation procedure are summarized, and comparisons with experimental mixing data are presented.

  11. ALE3D Simulations of Gap Closure and Surface Ignition for Cookoff Modeling

    SciTech Connect

    Howard, W M; McClelland, M A; Nichols, A L

    2006-06-22

    We are developing ALE3D models to describe the thermal, chemical and mechanical behavior during the heating, ignition and explosive phases of various cookoff phenomena. The candidate models and numerical strategies are being evaluated using benchmark cookoff experiments. ALE3D is a three-dimensional computer code capable of solving the model equations in a coupled fashion through all the phases of the cookoff in a single calculation. For the cookoff experiments, we are interested in representing behavior on widely varying timescales. We have used an implicit hydrodynamics option during the heating phase and an explicit solution method during the explosive phase. To complicate the modeling problem, high heat fluxes cause rapid temperature increases in boundary layers and lead to the formation of gaps between energetic and structural materials and ignition on surfaces. The initially solid energetic and structural materials react to produce gases, which fill the gaps. These materials can also melt and flow. Since an implicit solution method is used, simple no-strength materials models can no longer be used for liquids and gases. In this paper, we discuss and demonstrate choices of materials models for solid/liquid/gas mixtures to be used in conjunction with the implicit solution method. In addition, results are given for mesh movement strategies applied to the opening, closing, and surface ignition within gaps.

  12. Combining node-centered parallel radiation transport and higher-order multi-material cell-centered hydrodynamics methods in three-temperature radiation hydrodynamics code TRHD

    NASA Astrophysics Data System (ADS)

    Sijoy, C. D.; Chaturvedi, S.

    2016-06-01

    Higher-order cell-centered multi-material hydrodynamics (HD) and parallel node-centered radiation transport (RT) schemes are combined self-consistently in three-temperature (3T) radiation hydrodynamics (RHD) code TRHD (Sijoy and Chaturvedi, 2015) developed for the simulation of intense thermal radiation or high-power laser driven RHD. For RT, a node-centered gray model implemented in a popular RHD code MULTI2D (Ramis et al., 2009) is used. This scheme, in principle, can handle RT in both optically thick and thin materials. The RT module has been parallelized using message passing interface (MPI) for parallel computation. Presently, for multi-material HD, we have used a simple and robust closure model in which common strain rates to all materials in a mixed cell is assumed. The closure model has been further generalized to allow different temperatures for the electrons and ions. In addition to this, electron and radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. This has been achieved by using a node-centered symmetric-semi-implicit (SSI) integration scheme. The electron thermal conduction is calculated using a cell-centered, monotonic, non-linear finite volume scheme (NLFV) suitable for unstructured meshes. In this paper, we have described the details of the 2D, 3T, non-equilibrium, multi-material RHD code developed with a special attention to the coupling of various cell-centered and node-centered formulations along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We also report the parallel performance of RT module. Finally, in order to demonstrate the full capability of the code implementation, we have presented the simulation of laser driven shock propagation in a layered thin foil. The simulation results are found to be in good

  13. Combining node-centered parallel radiation transport and higher-order multi-material cell-centered hydrodynamics methods in three-temperature radiation hydrodynamics code TRHD

    NASA Astrophysics Data System (ADS)

    Sijoy, C. D.; Chaturvedi, S.

    2016-06-01

    Higher-order cell-centered multi-material hydrodynamics (HD) and parallel node-centered radiation transport (RT) schemes are combined self-consistently in three-temperature (3T) radiation hydrodynamics (RHD) code TRHD (Sijoy and Chaturvedi, 2015) developed for the simulation of intense thermal radiation or high-power laser driven RHD. For RT, a node-centered gray model implemented in a popular RHD code MULTI2D (Ramis et al., 2009) is used. This scheme, in principle, can handle RT in both optically thick and thin materials. The RT module has been parallelized using message passing interface (MPI) for parallel computation. Presently, for multi-material HD, we have used a simple and robust closure model in which common strain rates to all materials in a mixed cell is assumed. The closure model has been further generalized to allow different temperatures for the electrons and ions. In addition to this, electron and radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. This has been achieved by using a node-centered symmetric-semi-implicit (SSI) integration scheme. The electron thermal conduction is calculated using a cell-centered, monotonic, non-linear finite volume scheme (NLFV) suitable for unstructured meshes. In this paper, we have described the details of the 2D, 3T, non-equilibrium, multi-material RHD code developed with a special attention to the coupling of various cell-centered and node-centered formulations along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We also report the parallel performance of RT module. Finally, in order to demonstrate the full capability of the code implementation, we have presented the simulation of laser driven shock propagation in a layered thin foil. The simulation results are found to be in good

  14. One-Dimensional Lagrangian Code for Plasma Hydrodynamic Analysis of a Fusion Pellet Driven by Ion Beams.

    1986-12-01

    Version 00 The MEDUSA-IB code performs implosion and thermonuclear burn calculations of an ion beam driven ICF target, based on one-dimensional plasma hydrodynamics and transport theory. It can calculate the following values in spherical geometry through the progress of implosion and fuel burnup of a multi-layered target. (1) Hydrodynamic velocities, density, ion, electron and radiation temperature, radiation energy density, Rs and burn rate of target as a function of coordinates and time, (2) Fusion gainmore » as a function of time, (3) Ionization degree, (4) Temperature dependent ion beam energy deposition, (5) Radiation, -particle and neutron spectra as a function of time.« less

  15. Diffusive mesh relaxation in ALE finite element numerical simulations

    SciTech Connect

    Dube, E.I.

    1996-06-01

    The theory for a diffusive mesh relaxation algorithm is developed for use in three-dimensional Arbitary Lagrange/Eulerian (ALE) finite element simulation techniques. This mesh relaxer is derived by a variational principle for an unstructured 3D grid using finite elements, and incorporates hourglass controls in the numerical implementation. The diffusive coefficients are based on the geometric properties of the existing mesh, and are chosen so as to allow for a smooth grid that retains the general shape of the original mesh. The diffusive mesh relaxation algorithm is then applied to an ALE code system, and results from several test cases are discussed.

  16. Recent Hydrodynamics Improvements to the RELAP5-3D Code

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard.R. Schultz

    2009-07-01

    The hydrodynamics section of the RELAP5-3D computer program has been recently improved. Changes were made as follows: (1) improved turbine model, (2) spray model for the pressurizer model, (3) feedwater heater model, (4) radiological transport model, (5) improved pump model, and (6) compressor model.

  17. Cholla: 3D GPU-based hydrodynamics code for astrophysical simulation

    NASA Astrophysics Data System (ADS)

    Schneider, Evan E.; Robertson, Brant E.

    2016-07-01

    Cholla (Computational Hydrodynamics On ParaLLel Architectures) models the Euler equations on a static mesh and evolves the fluid properties of thousands of cells simultaneously using GPUs. It can update over ten million cells per GPU-second while using an exact Riemann solver and PPM reconstruction, allowing computation of astrophysical simulations with physically interesting grid resolutions (>256^3) on a single device; calculations can be extended onto multiple devices with nearly ideal scaling beyond 64 GPUs.

  18. ALE: Astronomical LIDAR for Extinction

    NASA Astrophysics Data System (ADS)

    Zimmer, Peter C.; McGraw, J. T.; Gimmestad, G.; Roberts, D.; Stewart, J.; Dawsey, M.; Fitch, J.; Smith, J.; Townsend, A.; Black, B.

    2006-12-01

    The primary impediment to precision all-sky photometry is the scattering or absorption of incoming starlight by the aerosols suspended in, and the molecules of, the Earth's atmosphere. The University of New Mexico (UNM) and the Georgia Tech Research Institute (GTRI) are currently developing the Astronomical LIDAR (LIght Detection And Ranging) for Extinction (ALE), which is undergoing final integration and initial calibration at UNM. ALE is based upon a 527nm laser operated at a pulse repetition rate of 1500 pps, and rendered eyesafe by expanding its beam through a 32cm diameter transmitter. The alt-az mounted ALE will operate in multiple modes, including mapping the sky to obtain a quantitative measurement of extinction sources, measuring a monochromatic extinction coefficient by producing Langely plots, and monitoring extinction in the direction in which a telescope is observing. A primary goal is to use the Rayleigh scattered LIDAR return from air above 20km as a quasi-constant illumination source. Air above this altitude is generally free from aerosols and the variations in density are relatively constant over intervals of a few minutes. When measured at several zenith angles, the integrated line-of-sight extinction can be obtained from a simple model fit of these returns. The 69 microjoule exit pulse power and 0.6m aperture receiver will allow ALE to collect approximately one million photons per minute from above 20km, enough to enable measurements of the monochromatic vertical extinction to better than 1% under photometric conditions. Along the way, ALE will also provide a plethora of additional information about the vertical and horizontal distributions of low-lying aerosols, dust or smoke in the free troposphere, and high cirrus, as well as detect the passage of boundary layer atmospheric gravity waves. This project is funded by NSF Grant 0421087.

  19. A New Multi-dimensional General Relativistic Neutrino Hydrodynamic Code for Core-collapse Supernovae. I. Method and Code Tests in Spherical Symmetry

    NASA Astrophysics Data System (ADS)

    Müller, Bernhard; Janka, Hans-Thomas; Dimmelmeier, Harald

    2010-07-01

    We present a new general relativistic code for hydrodynamical supernova simulations with neutrino transport in spherical and azimuthal symmetry (one dimension and two dimensions, respectively). The code is a combination of the COCONUT hydro module, which is a Riemann-solver-based, high-resolution shock-capturing method, and the three-flavor, fully energy-dependent VERTEX scheme for the transport of massless neutrinos. VERTEX integrates the coupled neutrino energy and momentum equations with a variable Eddington factor closure computed from a model Boltzmann equation and uses the "ray-by-ray plus" approximation in two dimensions, assuming the neutrino distribution to be axially symmetric around the radial direction at every point in space, and thus the neutrino flux to be radial. Our spacetime treatment employs the Arnowitt-Deser-Misner 3+1 formalism with the conformal flatness condition for the spatial three metric. This approach is exact for the one-dimensional case and has previously been shown to yield very accurate results for spherical and rotational stellar core collapse. We introduce new formulations of the energy equation to improve total energy conservation in relativistic and Newtonian hydro simulations with grid-based Eulerian finite-volume codes. Moreover, a modified version of the VERTEX scheme is developed that simultaneously conserves energy and lepton number in the neutrino transport with better accuracy and higher numerical stability in the high-energy tail of the spectrum. To verify our code, we conduct a series of tests in spherical symmetry, including a detailed comparison with published results of the collapse, shock formation, shock breakout, and accretion phases. Long-time simulations of proto-neutron star cooling until several seconds after core bounce both demonstrate the robustness of the new COCONUT-VERTEX code and show the approximate treatment of relativistic effects by means of an effective relativistic gravitational potential as in

  20. A NEW MULTI-DIMENSIONAL GENERAL RELATIVISTIC NEUTRINO HYDRODYNAMIC CODE FOR CORE-COLLAPSE SUPERNOVAE. I. METHOD AND CODE TESTS IN SPHERICAL SYMMETRY

    SciTech Connect

    Mueller, Bernhard; Janka, Hans-Thomas; Dimmelmeier, Harald E-mail: thj@mpa-garching.mpg.d

    2010-07-15

    We present a new general relativistic code for hydrodynamical supernova simulations with neutrino transport in spherical and azimuthal symmetry (one dimension and two dimensions, respectively). The code is a combination of the COCONUT hydro module, which is a Riemann-solver-based, high-resolution shock-capturing method, and the three-flavor, fully energy-dependent VERTEX scheme for the transport of massless neutrinos. VERTEX integrates the coupled neutrino energy and momentum equations with a variable Eddington factor closure computed from a model Boltzmann equation and uses the 'ray-by-ray plus' approximation in two dimensions, assuming the neutrino distribution to be axially symmetric around the radial direction at every point in space, and thus the neutrino flux to be radial. Our spacetime treatment employs the Arnowitt-Deser-Misner 3+1 formalism with the conformal flatness condition for the spatial three metric. This approach is exact for the one-dimensional case and has previously been shown to yield very accurate results for spherical and rotational stellar core collapse. We introduce new formulations of the energy equation to improve total energy conservation in relativistic and Newtonian hydro simulations with grid-based Eulerian finite-volume codes. Moreover, a modified version of the VERTEX scheme is developed that simultaneously conserves energy and lepton number in the neutrino transport with better accuracy and higher numerical stability in the high-energy tail of the spectrum. To verify our code, we conduct a series of tests in spherical symmetry, including a detailed comparison with published results of the collapse, shock formation, shock breakout, and accretion phases. Long-time simulations of proto-neutron star cooling until several seconds after core bounce both demonstrate the robustness of the new COCONUT-VERTEX code and show the approximate treatment of relativistic effects by means of an effective relativistic gravitational potential as in

  1. User's manual for DYNA2D: an explicit two-dimensional hydrodynamic finite-element code with interactive rezoning

    SciTech Connect

    Hallquist, J.O.

    1982-02-01

    This revised report provides an updated user's manual for DYNA2D, an explicit two-dimensional axisymmetric and plane strain finite element code for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. A contact-impact algorithm permits gaps and sliding along material interfaces. By a specialization of this algorithm, such interfaces can be rigidly tied to admit variable zoning without the need of transition regions. Spatial discretization is achieved by the use of 4-node solid elements, and the equations-of motion are integrated by the central difference method. An interactive rezoner eliminates the need to terminate the calculation when the mesh becomes too distorted. Rather, the mesh can be rezoned and the calculation continued. The command structure for the rezoner is described and illustrated by an example.

  2. ZEUS-2D: A radiation magnetohydrodynamics code for astrophysical flows in two space dimensions. I - The hydrodynamic algorithms and tests.

    NASA Astrophysics Data System (ADS)

    Stone, James M.; Norman, Michael L.

    1992-06-01

    A detailed description of ZEUS-2D, a numerical code for the simulation of fluid dynamical flows including a self-consistent treatment of the effects of magnetic fields and radiation transfer is presented. Attention is given to the hydrodynamic (HD) algorithms which form the foundation for the more complex MHD and radiation HD algorithms. The effect of self-gravity on the flow dynamics is accounted for by an iterative solution of the sparse-banded matrix resulting from discretizing the Poisson equation in multidimensions. The results of an extensive series of HD test problems are presented. A detailed description of the MHD algorithms in ZEUS-2D is presented. A new method of computing the electromotive force is developed using the method of characteristics (MOC). It is demonstrated through the results of an extensive series of MHD test problems that the resulting hybrid MOC-constrained transport method provides for the accurate evolution of all modes of MHD wave families.

  3. ALES: An Innovative Argument-Learning Environment

    ERIC Educational Resources Information Center

    Abbas, Safia; Sawamura, Hajime

    2010-01-01

    This paper presents the development of an Argument-Learning System (ALES). The idea is based on the AIF (argumentation interchange format) ontology using "Walton theory". ALES uses different mining techniques to manage a highly structured arguments repository. This repository was designed, developed and implemented by the authors. The aim is to…

  4. Giant impacts during planet formation: Parallel tree code simulations using smooth particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Cohen, Randi L.

    There is both theoretical and observational evidence that giant planets collided with objects ≥ Mearth during their evolution. These impacts may play a key role in giant planet formation. This paper describes impacts of a ˜ Earth-mass object onto a suite of proto-giant-planets, as simulated using an SPH parallel tree code. We run 6 simulations, varying the impact angle and evolutionary stage of the proto-Jupiter. We find that it is possible for an impactor to free some mass from the core of the proto-planet it impacts through direct collision, as well as to make physical contact with the core yet escape partially, or even completely, intact. None of the 6 cases we consider produced a solid disk or resulted in a net decrease in the core mass of the pinto-planet (since the mass decrease due to disruption was outweighed by the increase due to the addition of the impactor's mass to the core). However, we suggest parameters which may have these effects, and thus decrease core mass and formation time in protoplanetary models and/or create satellite systems. We find that giant impacts can remove significant envelope mass from forming giant planets, leaving only 2 MEarth of gas, similar to Uranus and Neptune. They can also create compositional inhomogeneities in planetary cores, which creates differences in planetary thermal emission characteristics.

  5. Giant Impacts During Planet Formation: Parallel Tree Code Simulations Using Smooth Particle Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Cohen, R.; Bodenheimer, P.; Asphaug, E.

    2000-12-01

    There is both theoretical and observational evidence that giant planets collided with objects with mass >= Mearth during their evolution. These impacts may help shorten planetary formation timescales by changing the opacity of the planetary atmosphere to allow quicker cooling. They may also redistribute heavy metals within giant planets, affect the core/envelope mass ratio, and help determine the ratio of emitted to absorbed energy within giant planets. Thus, the researchers propose to simulate the impact of a ~ Earth-mass object onto a proto-giant-planet with SPH. Results of the SPH collision models will be input into a steady-state planetary evolution code and the effect of impacts on formation timescales, core/envelope mass ratios, density profiles, and thermal emissions of giant planets will be quantified. The collision will be modelled using a modified version of an SPH routine which simulates the collision of two polytropes. The Saumon-Chabrier and Tillotson equations of state will replace the polytropic equation of state. The parallel tree algorithm of Olson & Packer will be used for the domain decomposition and neighbor search necessary to calculate pressure and self-gravity efficiently. This work is funded by the NASA Graduate Student Researchers Program.

  6. Binary neutron-star mergers with Whisky and SACRA: First quantitative comparison of results from independent general-relativistic hydrodynamics codes

    NASA Astrophysics Data System (ADS)

    Baiotti, Luca; Shibata, Masaru; Yamamoto, Tetsuro

    2010-09-01

    We present the first quantitative comparison of two independent general-relativistic hydrodynamics codes, the whisky code and the sacra code. We compare the output of simulations starting from the same initial data and carried out with the configuration (numerical methods, grid setup, resolution, gauges) which for each code has been found to give consistent and sufficiently accurate results, in particular, in terms of cleanness of gravitational waveforms. We focus on the quantities that should be conserved during the evolution (rest mass, total mass energy, and total angular momentum) and on the gravitational-wave amplitude and frequency. We find that the results produced by the two codes agree at a reasonable level, with variations in the different quantities but always at better than about 10%.

  7. Advanced life events (ALEs) that impede aging-in-place among seniors.

    PubMed

    Lindquist, Lee A; Ramirez-Zohfeld, Vanessa; Sunkara, Priya; Forcucci, Chris; Campbell, Dianne; Mitzen, Phyllis; Cameron, Kenzie A

    2016-01-01

    Despite the wishes of many seniors to age-in-place in their own homes, critical events occur that impede their ability to do so. A gap exists as to what these advanced life events (ALEs) entail and the planning that older adults perceive is necessary. The purpose of this study was to identify seniors' perceptions and planning toward ALEs that may impact their ability to remain in their own home. We conducted focus groups with 68 seniors, age ≥65 years (mean age 73.8 years), living in the community (rural, urban, and suburban), using open-ended questions about perceptions of future heath events, needs, and planning. Three investigators coded transcriptions using constant comparative analysis to identify emerging themes, with disagreements resolved via consensus. Subjects identified five ALEs that impacted their ability to remain at home: (1) Hospitalizations, (2) Falls, (3) Dementia, (4) Spousal Loss, and (5) Home Upkeep Issues. While recognizing that ALEs frequently occur, many subjects reported a lack of planning for ALEs and perceived that these ALEs would not happen to them. Themes for the rationale behind the lack of planning emerged as: uncertainty in future, being too healthy/too sick, offspring influences, denial/procrastination, pride, feeling overwhelmed, and financial concerns. Subjects expressed reliance on offspring for navigating future ALEs, although many had not communicated their needs with their offspring. Overcoming the reasons for not planning for ALEs is crucial, as being prepared for future home needs provides seniors a voice in their care while engaging key supporters (e.g., offspring). PMID:26952382

  8. A general higher-order remap algorithm for ALE calculations

    SciTech Connect

    Chiravalle, Vincent P

    2011-01-05

    A numerical technique for solving the equations of fluid dynamics with arbitrary mesh motion is presented. The three phases of the Arbitrary Lagrangian Eulerian (ALE) methodology are outlined: the Lagrangian phase, grid relaxation phase and remap phase. The Lagrangian phase follows a well known approach from the HEMP code; in addition the strain rate andflow divergence are calculated in a consistent manner according to Margolin. A donor cell method from the SALE code forms the basis of the remap step, but unlike SALE a higher order correction based on monotone gradients is also added to the remap. Four test problems were explored to evaluate the fidelity of these numerical techniques, as implemented in a simple test code, written in the C programming language, called Cercion. Novel cell-centered data structures are used in Cercion to reduce the complexity of the programming and maximize the efficiency of memory usage. The locations of the shock and contact discontinuity in the Riemann shock tube problem are well captured. Cercion demonstrates a high degree of symmetry when calculating the Sedov blast wave solution, with a peak density at the shock front that is similar to the value determined by the RAGE code. For a flyer plate test problem both Cercion and FLAG give virtually the same velocity temporal profile at the target-vacuum interface. When calculating a cylindrical implosion of a steel shell, Cercion and FLAG agree well and the Cercion results are insensitive to the use of ALE.

  9. Cookoff response of PBXN-109: material characterization and ALE3D model

    SciTech Connect

    McClelland, M A; Tran, T D; Cunningham, B J; Weese, R K; Maienschein, J L

    2000-10-24

    Materials properties measurements are made for the RDX-based explosive, PBXN-109, and an initial ALE3D model for cookoff is discussed. A significant effort is underway in the U.S. Navy and Department of Energy (DOE) laboratories to understand the thermal explosion behavior of this material. Benchmark cookoff experiments are being performed by the U.S. Navy to validate DOE materials models and computer codes. The ALE3D computer code can model the coupled thermal, mechanical, and chemical behavior of heating and ignition in cookoff tests. In order to provide a predictive capability, materials characterization measurements are being performed to specify parameters in these models. We report on progress in the development of these ALE3D materials models and present measurements as a function of temperature for thermal expansion, heat capacity, shear modulus, bulk modulus, and One-Dimensional-Time-to-Explosion (ODTX).

  10. Gurson's Model: ALE Formulation and Strain Localization

    SciTech Connect

    Cunda, Luiz A. B. da; Creus, Guillermo J.

    2007-05-17

    This paper presents a brief review of Gurson's damage model, employed to describes the strength degradation in ductile metals submitted to large plastic deformations. The damage model is applied using finite elements and an Arbitrary Lagrangian-Eulerian formulation (ALE), to ensure a better quality to the finite elements mesh. The study of the combined application of ALE and Gurson approach to damage modeling and strain localization is the object of this paper.

  11. Dynamic fission instabilities in rapidly rotating n = 3/2 polytropes - A comparison of results from finite-difference and smoothed particle hydrodynamics codes

    SciTech Connect

    Durisen, R.H.; Gingold, R.A.; Tohline, J.E.; Boss, A.P.

    1986-06-01

    The effectiveness of three different hydrodynamics models is evaluated for the analysis of the effects of fission instabilities in rapidly rotating, equilibrium flows. The instabilities arise in nonaxisymmetric Kelvin modes as rotational energy in the flow increases, which may occur in the formation of close binary stars and planets when the fluid proto-object contracts quasi-isostatically. Two finite-difference, donor-cell methods and a smoothed particle hydrodynamics (SPH) code are examined, using a polytropic index of 3/2 and ratios of total rotational kinetic energy to gravitational energy of 0.33 and 0.38. The models show that dynamic bar instabilities with the 3/2 polytropic index do not yield detached binaries and multiple systems. Ejected mass and angular momentum form two trailing spiral arms that become a disk or ring around the central remnant. The SPH code yields the same data as the finite difference codes but with less computational effort and without acceptable fluid constraints in low density regions. Methods for improving both types of codes are discussed. 68 references.

  12. A multigroup diffusion solver using pseudo transient continuation for a radiation-hydrodynamic code with patch-based AMR

    SciTech Connect

    Shestakov, Aleksei I. Offner, Stella S.R.

    2008-01-10

    We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with Adaptive Mesh Refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate 'level-solve' packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation ({psi}tc). We analyze the magnitude of the {psi}tc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichlet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the 'partial temperature' scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of {psi}tc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates

  13. A Multigroup diffusion Solver Using Pseudo Transient Continuation for a Radiaiton-Hydrodynamic Code with Patch-Based AMR

    SciTech Connect

    Shestakov, A I; Offner, S R

    2007-03-02

    We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with adaptive mesh refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate 'level-solve' packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation ({Psi}tc). We analyze the magnitude of the {Psi}tc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the 'partial temperature' scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of {Psi}tc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates

  14. A multigroup diffusion solver using pseudo transient continuation for a radiation-hydrodynamic code with patch-based AMR

    NASA Astrophysics Data System (ADS)

    Shestakov, Aleksei I.; Offner, Stella S. R.

    2008-01-01

    We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with Adaptive Mesh Refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate "level-solve" packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation (Ψtc). We analyze the magnitude of the Ψtc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichlet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the "partial temperature" scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of Ψtc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates the

  15. A Multigroup diffusion solver using pseudo transient continuation for a radiation-hydrodynamic code with patch-based AMR

    SciTech Connect

    Shestakov, A I; Offner, S R

    2006-09-21

    We present a scheme to solve the nonlinear multigroup radiation diffusion (MGD) equations. The method is incorporated into a massively parallel, multidimensional, Eulerian radiation-hydrodynamic code with adaptive mesh refinement (AMR). The patch-based AMR algorithm refines in both space and time creating a hierarchy of levels, coarsest to finest. The physics modules are time-advanced using operator splitting. On each level, separate 'level-solve' packages advance the modules. Our multigroup level-solve adapts an implicit procedure which leads to a two-step iterative scheme that alternates between elliptic solves for each group with intra-cell group coupling. For robustness, we introduce pseudo transient continuation ({Psi}tc). We analyze the magnitude of the {Psi}tc parameter to ensure positivity of the resulting linear system, diagonal dominance and convergence of the two-step scheme. For AMR, a level defines a subdomain for refinement. For diffusive processes such as MGD, the refined level uses Dirichet boundary data at the coarse-fine interface and the data is derived from the coarse level solution. After advancing on the fine level, an additional procedure, the sync-solve (SS), is required in order to enforce conservation. The MGD SS reduces to an elliptic solve on a combined grid for a system of G equations, where G is the number of groups. We adapt the 'partial temperature' scheme for the SS; hence, we reuse the infrastructure developed for scalar equations. Results are presented. We consider a multigroup test problem with a known analytic solution. We demonstrate utility of {Psi}tc by running with increasingly larger timesteps. Lastly, we simulate the sudden release of energy Y inside an Al sphere (r = 15 cm) suspended in air at STP. For Y = 11 kT, we find that gray radiation diffusion and MGD produce similar results. However, if Y = 1 MT, the two packages yield different results. Our large Y simulation contradicts a long-standing theory and demonstrates

  16. 3D Hydrodynamic Simulations with Yguazú-A Code to Model a Jet in a Galaxy Cluster

    NASA Astrophysics Data System (ADS)

    Haro-Corzo, S. A. R.; Velazquez, P.; Diaz, A.

    2009-05-01

    We present preliminary results for a galaxy's jet expanding into an intra-cluster medium (ICM). We attempt to model the jet-gas interaction and the evolution of a extragalactic collimated jet placed at center of computational grid, which it is modeled as a cylinder ejecting gas in the z-axis direction with fixed velocity. It has precession motion around z-axis (period of 10^5 sec.) and orbital motion in XY-plane (period of 500 yr.). This jet is embedded in the ICM, which is modeled as surrounding wind in the XZ plane. We carried out 3D hydrodynamical simulations using Yguazú-A code. This simulation do not include radiative losses. In order to compare the numerical results with observations, we generated synthetic X-ray emission images. X-ray observations with high-resolution of rich cluster of galaxies show diffuse emission with filamentary structure (sometimes called as cooling flow or X-ray filament). Radio observations show a jet-like emission of the central region of the cluster. Joining these observations, in this work we explore the possibility that the jet-ambient gas interaction leads to a filamentary morphology in the X-ray domain. We have found that simulation considering orbital motion offers the possibility to explain the diffuse emission observed in the X-ray domain. The circular orbital motion, additional to precession motion, contribute to disperse the shocked gas and the X-ray appearance of the 3D simulation reproduce some important details of Abel 1795 X-ray emission (Rodriguez-Martinez et al. 2006, A&A, 448, 15): A bright bow-shock at north (spot), where interact directly the jet and the ICM and which is observed in the X-ray image. Meanwhile, in the south side there is no bow-shock X-ray emission, but the wake appears as a X-ray source. This wake is part of the diffuse shocked ambient gas region.

  17. Radiation Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Mihalas, Dimitri

    Hydrodynamics Front Fitting Artificial Dissipation The Adaptive Grid The TITAN Code References

  18. A New Multi-energy Neutrino Radiation-Hydrodynamics Code in Full General Relativity and Its Application to the Gravitational Collapse of Massive Stars

    NASA Astrophysics Data System (ADS)

    Kuroda, Takami; Takiwaki, Tomoya; Kotake, Kei

    2016-02-01

    We present a new multi-dimensional radiation-hydrodynamics code for massive stellar core-collapse in full general relativity (GR). Employing an M1 analytical closure scheme, we solve spectral neutrino transport of the radiation energy and momentum based on a truncated moment formalism. Regarding neutrino opacities, we take into account a baseline set in state-of-the-art simulations, in which inelastic neutrino-electron scattering, thermal neutrino production via pair annihilation, and nucleon-nucleon bremsstrahlung are included. While the Einstein field equations and the spatial advection terms in the radiation-hydrodynamics equations are evolved explicitly, the source terms due to neutrino-matter interactions and energy shift in the radiation moment equations are integrated implicitly by an iteration method. To verify our code, we first perform a series of standard radiation tests with analytical solutions that include the check of gravitational redshift and Doppler shift. A good agreement in these tests supports the reliability of the GR multi-energy neutrino transport scheme. We then conduct several test simulations of core-collapse, bounce, and shock stall of a 15{M}⊙ star in the Cartesian coordinates and make a detailed comparison with published results. Our code performs quite well to reproduce the results of full Boltzmann neutrino transport especially before bounce. In the postbounce phase, our code basically performs well, however, there are several differences that are most likely to come from the insufficient spatial resolution in our current 3D-GR models. For clarifying the resolution dependence and extending the code comparison in the late postbounce phase, we discuss that next-generation Exaflops class supercomputers are needed at least.

  19. Evaluation of ALE processes for patterning

    NASA Astrophysics Data System (ADS)

    Papalia, J. M.; Marchack, N.; Bruce, R. L.; Miyazoe, H.; Engelmann, S. U.; Joseph, E. A.

    2016-03-01

    The need for continued device scaling along with the increasing demand for high precision have lead to the development of atomic layer etch processes in semiconductor manufacturing. We have tested this new methodology with regard to patterning applications. While these new plasma-enhanced atomic layer etch (PE-ALE) processes show encouraging results, most patterning applications are best realized by optimizations through discharge chemistry and/or plasma parameters. While PE-ALE approaches seem to have limited success for trilayer patterning applications, significant improvements were obtained when applying them to small pitch. In particular the increased selectivity to OPL seems to offer a potential benefit for patterning high aspect ratio features.

  20. Modeling Heat Conduction and Radiation Transport with the Diffusion Equation in NIF ALE-AMR

    SciTech Connect

    Fisher, A C; Bailey, D S; Kaiser, T B; Gunney, B N; Masters, N D; Koniges, A E; Eder, D C; Anderson, R W

    2009-10-06

    The ALE-AMR code developed for NIF is a multi-material hydro-code that models target assembly fragmentation in the aftermath of a shot. The combination of ALE (Arbitrary Lagrangian Eulerian) hydro with AMR (Adaptive Mesh Refinement) allows the code to model a wide range of physical conditions and spatial scales. The large range of temperatures encountered in the NIF target chamber can lead to significant fluxes of energy due to thermal conduction and radiative transport. These physical effects can be modeled approximately with the aid of the diffusion equation. We present a novel method for the solution of the diffusion equation on a composite mesh in order to capture these physical effects.

  1. Characterization and Functional Analysis of the MAL and MPH Loci for Maltose Utilization in Some Ale and Lager Yeast Strains

    PubMed Central

    Vidgren, Virve; Ruohonen, Laura; Londesborough, John

    2005-01-01

    Maltose and maltotriose are the major sugars in brewer's wort. Brewer's yeasts contain multiple genes for maltose transporters. It is not known which of these express functional transporters. We correlated maltose transport kinetics with the genotypes of some ale and lager yeasts. Maltose transport by two ale strains was strongly inhibited by other α-glucosides, suggesting the use of broad substrate specificity transporters, such as Agt1p. Maltose transport by three lager strains was weakly inhibited by other α-glucosides, suggesting the use of narrow substrate specificity transporters. Hybridization studies showed that all five strains contained complete MAL1, MAL2, MAL3, and MAL4 loci, except for one ale strain, which lacked a MAL2 locus. All five strains also contained both AGT1 (coding a broad specificity α-glucoside transporter) and MAL11 alleles. MPH genes (maltose permease homologues) were present in the lager but not in the ale strains. During growth on maltose, the lager strains expressed AGT1 at low levels and MALx1 genes at high levels, whereas the ale strains expressed AGT1 at high levels and MALx1 genes at low levels. MPHx expression was negligible in all strains. The AGT1 sequences from the ale strains encoded full-length (616 amino acid) polypeptides, but those from both sequenced lager strains encoded truncated (394 amino acid) polypeptides that are unlikely to be functional transporters. Thus, despite the apparently similar genotypes of these ale and lager strains revealed by hybridization, maltose is predominantly carried by AGT1-encoded transporters in the ale strains and by MALx1-encoded transporters in the lager strains. PMID:16332759

  2. Simulation of underwater explosion benchmark experiments with ALE3D

    SciTech Connect

    Couch, R.; Faux, D.

    1997-05-19

    Some code improvements have been made during the course of this study. One immediately obvious need was for more flexibility in the constitutive representation for materials in shell elements. To remedy this situation, a model with a tabular representation of stress versus strain and rate dependent effects was implemented. This was required in order to obtain reasonable results in the IED cylinder simulation. Another deficiency was in the ability to extract and plot variables associated with shell elements. The pipe whip analysis required the development of a scheme to tally and plot time dependent shell quantities such as stresses and strains. This capability had previously existed only for solid elements. Work was initiated to provide the same range of plotting capability for structural elements that exist with the DYNA3D/TAURUS tools. One of the characteristics of these problems is the disparity in zoning required in the vicinity of the charge and bubble compared to that needed in the far field. This disparity can cause the equipotential relaxation logic to provide a less than optimal solution. Various approaches were utilized to bias the relaxation to obtain more optimal meshing during relaxation. Extensions of these techniques have been developed to provide more powerful options, but more work still needs to be done. The results presented here are representative of what can be produced with an ALE code structured like ALE3D. They are not necessarily the best results that could have been obtained. More experience in assessing sensitivities to meshing and boundary conditions would be very useful. A number of code deficiencies discovered in the course of this work have been corrected and are available for any future investigations.

  3. Scaling and performance of a 3-D radiation hydrodynamics code on message-passing parallel computers: final report

    SciTech Connect

    Hayes, J C; Norman, M

    1999-10-28

    This report details an investigation into the efficacy of two approaches to solving the radiation diffusion equation within a radiation hydrodynamic simulation. Because leading-edge scientific computing platforms have evolved from large single-node vector processors to parallel aggregates containing tens to thousands of individual CPU's, the ability of an algorithm to maintain high compute efficiency when distributed over a large array of nodes is critically important. The viability of an algorithm thus hinges upon the tripartite question of numerical accuracy, total time to solution, and parallel efficiency.

  4. Comparison of ALE and SPH Simulations of Vertical Drop Tests of a Composite Fuselage Section into Water

    NASA Technical Reports Server (NTRS)

    Jackson, Karen E.; Fuchs, Yvonne T.

    2008-01-01

    Simulation of multi-terrain impact has been identified as an important research area for improved prediction of rotorcraft crashworthiness within the NASA Subsonic Rotary Wing Aeronautics Program on Rotorcraft Crashworthiness. As part of this effort, two vertical drop tests were conducted of a 5-ft-diameter composite fuselage section into water. For the first test, the fuselage section was impacted in a baseline configuration without energy absorbers. For the second test, the fuselage section was retrofitted with a composite honeycomb energy absorber. Both tests were conducted at a nominal velocity of 25-ft/s. A detailed finite element model was developed to represent each test article and water impact was simulated using both Arbitrary Lagrangian Eulerian (ALE) and Smooth Particle Hydrodynamics (SPH) approaches in LS-DYNA, a nonlinear, explicit transient dynamic finite element code. Analytical predictions were correlated with experimental data for both test configurations. In addition, studies were performed to evaluate the influence of mesh density on test-analysis correlation.

  5. THC: a new high-order finite-difference high-resolution shock-capturing code for special-relativistic hydrodynamics

    NASA Astrophysics Data System (ADS)

    Radice, D.; Rezzolla, L.

    2012-11-01

    We present THC: a new high-order flux-vector-splitting code for Newtonian and special-relativistic hydrodynamics designed for direct numerical simulations of turbulent flows. Our code implements a variety of different reconstruction algorithms, such as the popular weighted essentially non oscillatory and monotonicity-preserving schemes, or the more specialised bandwidth-optimised WENO scheme that has been specifically designed for the study of compressible turbulence. We show the first systematic comparison of these schemes in Newtonian physics as well as for special-relativistic flows. In particular we will present the results obtained in simulations of grid-aligned and oblique shock waves and nonlinear, large-amplitude, smooth adiabatic waves. We will also discuss the results obtained in classical benchmarks such as the double-Mach shock reflection test in Newtonian physics or the linear and nonlinear development of the relativistic Kelvin-Helmholtz instability in two and three dimensions. Finally, we study the turbulent flow induced by the Kelvin-Helmholtz instability and we show that our code is able to obtain well-converged velocity spectra, from which we benchmark the effective resolution of the different schemes.

  6. STEALTH: a Lagrange explicit finite difference code for solids, structural, and thermohydraulic analysis. Volume 7: implicit hydrodynamics. Computer code manual. [PWR; BWR

    SciTech Connect

    McKay, M.W.

    1982-06-01

    STEALTH is a family of computer codes that solve the equations of motion for a general continuum. These codes can be used to calculate a variety of physical processes in which the dynamic behavior of a continuum is involved. The versions of STEALTH described in this volume were designed for the calculation of problems involving low-speed fluid flow. They employ an implicit finite difference technique to solve the one- and two-dimensional equations of motion, written for an arbitrary coordinate system, for both incompressible and compressible fluids. The solution technique involves an iterative solution of the implicit, Lagrangian finite difference equations. Convection terms that result from the use of an arbitrarily-moving coordinate system are calculated separately. This volume provides the theoretical background, the finite difference equations, and the input instructions for the one- and two-dimensional codes; a discussion of several sample problems; and a listing of the input decks required to run those problems.

  7. SIMULATING THE COMMON ENVELOPE PHASE OF A RED GIANT USING SMOOTHED-PARTICLE HYDRODYNAMICS AND UNIFORM-GRID CODES

    SciTech Connect

    Passy, Jean-Claude; Mac Low, Mordecai-Mark; De Marco, Orsola; Fryer, Chris L.; Diehl, Steven; Rockefeller, Gabriel; Herwig, Falk; Oishi, Jeffrey S.; Bryan, Greg L.

    2012-01-01

    We use three-dimensional hydrodynamical simulations to study the rapid infall phase of the common envelope (CE) interaction of a red giant branch star of mass equal to 0.88 M{sub Sun} and a companion star of mass ranging from 0.9 down to 0.1 M{sub Sun }. We first compare the results obtained using two different numerical techniques with different resolutions, and find very good agreement overall. We then compare the outcomes of those simulations with observed systems thought to have gone through a CE. The simulations fail to reproduce those systems in the sense that most of the envelope of the donor remains bound at the end of the simulations and the final orbital separations between the donor's remnant and the companion, ranging from 26.8 down to 5.9 R{sub Sun }, are larger than the ones observed. We suggest that this discrepancy vouches for recombination playing an essential role in the ejection of the envelope and/or significant shrinkage of the orbit happening in the subsequent phase.

  8. Recent Advances in the Modeling of the Transport of Two-Plasmon-Decay Electrons in the 1-D Hydrodynamic Code LILAC

    NASA Astrophysics Data System (ADS)

    Delettrez, J. A.; Myatt, J. F.; Yaakobi, B.

    2015-11-01

    The modeling of the fast-electron transport in the 1-D hydrodynamic code LILAC was modified because of the addition of cross-beam-energy-transfer (CBET) in implosion simulations. Using the old fast-electron with source model CBET results in a shift of the peak of the hard x-ray (HXR) production from the end of the laser pulse, as observed in experiments, to earlier in the pulse. This is caused by a drop in the laser intensity of the quarter-critical surface from CBET interaction at lower densities. Data from simulations with the laser plasma simulation environment (LPSE) code will be used to modify the source algorithm in LILAC. In addition, the transport model in LILAC has been modified to include deviations from the straight-line algorithm and non-specular reflection at the sheath to take into account the scattering from collisions and magnetic fields in the corona. Simulation results will be compared with HXR emissions from both room-temperature plastic and cryogenic target experiments. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.

  9. Algebraic Flux Correction and Geometric Conservation in ALE Computations

    NASA Astrophysics Data System (ADS)

    Scovazzi, Guglielmo; López Ortega, Alejandro

    In this chapter, we describe the important role played by the so-called Geometric Conservation Law (GCL) in the design of Flux-Corrected Transport (FCT) methods for Arbitrary Lagrangian-Eulerian (ALE) applications. We propose a conservative synchronized remap algorithm applicable to arbitrary Lagrangian-Eulerian computations with nodal finite elements. Unique to the proposed method is the direct incorporation of the geometric conservation law (GCL) in the resulting numerical scheme. We show how the geometric conservation law allows the proposed method to inherit the positivity preserving and local extrema diminishing (LED) properties typical of FCT schemes for pure transport problems. The extension to systems of equations which typically arise in meteorological and compressible flow computations is performed by means of a synchronized strategy. The proposed approach also complements and extends the work of the first author on nodal-based methods for shock hydrodynamics, delivering a fully integrated suite of Lagrangian/remap algorithms for computations of compressible materials under extreme load conditions. Numerical tests in multiple dimensions show that the method is robust and accurate in typical computational scenarios.

  10. Measurement and ALE3D Simulation of Violence in a Deflagration Experiment With LX-10 and Aermet-100 Alloy

    SciTech Connect

    Knap, J; McClelland, M A; Maienschein, J L; Howard, W M; Nichols, A L; deHaven, M R; Strand, O T

    2006-06-22

    We describe the results of a Scaled-Thermal-Explosion-eXperiment (STEX) for LX-10 (94.7 % HMX, 5.3 % Viton A) confined in an AerMet 100 (iron-cobalt-nickel alloy) tube with reinforced end caps. The experimental measurements are compared with predictions of an Arbitrary-Lagrangian-Eulerian (ALE3D) computer model. ALE3D is a three-dimensional multi-physics computer code capable of solving coupled equations describing thermal, mechanical and chemical behavior of materials. In particular, we focus on the processes linked to fracture and fragmentation of the AerMet tube driven by the LX-10 deflagration.

  11. A New Multi-dimensional General Relativistic Neutrino Hydrodynamics Code for Core-collapse Supernovae. IV. The Neutrino Signal

    NASA Astrophysics Data System (ADS)

    Müller, Bernhard; Janka, Hans-Thomas

    2014-06-01

    Considering six general relativistic, two-dimensional (2D) supernova (SN) explosion models of progenitor stars between 8.1 and 27 M ⊙, we systematically analyze the properties of the neutrino emission from core collapse and bounce to the post-explosion phase. The models were computed with the VERTEX-COCONUT code, using three-flavor, energy-dependent neutrino transport in the ray-by-ray-plus approximation. Our results confirm the close similarity of the mean energies, langErang, of \\bar{\

  12. A New Multi-dimensional General Relativistic Neutrino Hydrodynamics Code for Core-collapse Supernovae. II. Relativistic Explosion Models of Core-collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Müller, Bernhard; Janka, Hans-Thomas; Marek, Andreas

    2012-09-01

    We present the first two-dimensional general relativistic (GR) simulations of stellar core collapse and explosion with the COCONUT hydrodynamics code in combination with the VERTEX solver for energy-dependent, three-flavor neutrino transport, using the extended conformal flatness condition for approximating the space-time metric and a ray-by-ray-plus ansatz to tackle the multi-dimensionality of the transport. For both of the investigated 11.2 and 15 M ⊙ progenitors we obtain successful, though seemingly marginal, neutrino-driven supernova explosions. This outcome and the time evolution of the models basically agree with results previously obtained with the PROMETHEUS hydro solver including an approximative treatment of relativistic effects by a modified Newtonian potential. However, GR models exhibit subtle differences in the neutrinospheric conditions compared with Newtonian and pseudo-Newtonian simulations. These differences lead to significantly higher luminosities and mean energies of the radiated electron neutrinos and antineutrinos and therefore to larger energy-deposition rates and heating efficiencies in the gain layer with favorable consequences for strong nonradial mass motions and ultimately for an explosion. Moreover, energy transfer to the stellar medium around the neutrinospheres through nucleon recoil in scattering reactions of heavy-lepton neutrinos also enhances the mentioned effects. Together with previous pseudo-Newtonian models, the presented relativistic calculations suggest that the treatment of gravity and energy-exchanging neutrino interactions can make differences of even 50%-100% in some quantities and is likely to contribute to a finally successful explosion mechanism on no minor level than hydrodynamical differences between different dimensions.

  13. A NEW MULTI-DIMENSIONAL GENERAL RELATIVISTIC NEUTRINO HYDRODYNAMICS CODE FOR CORE-COLLAPSE SUPERNOVAE. II. RELATIVISTIC EXPLOSION MODELS OF CORE-COLLAPSE SUPERNOVAE

    SciTech Connect

    Mueller, Bernhard; Janka, Hans-Thomas; Marek, Andreas E-mail: thj@mpa-garching.mpg.de

    2012-09-01

    We present the first two-dimensional general relativistic (GR) simulations of stellar core collapse and explosion with the COCONUT hydrodynamics code in combination with the VERTEX solver for energy-dependent, three-flavor neutrino transport, using the extended conformal flatness condition for approximating the space-time metric and a ray-by-ray-plus ansatz to tackle the multi-dimensionality of the transport. For both of the investigated 11.2 and 15 M{sub Sun} progenitors we obtain successful, though seemingly marginal, neutrino-driven supernova explosions. This outcome and the time evolution of the models basically agree with results previously obtained with the PROMETHEUS hydro solver including an approximative treatment of relativistic effects by a modified Newtonian potential. However, GR models exhibit subtle differences in the neutrinospheric conditions compared with Newtonian and pseudo-Newtonian simulations. These differences lead to significantly higher luminosities and mean energies of the radiated electron neutrinos and antineutrinos and therefore to larger energy-deposition rates and heating efficiencies in the gain layer with favorable consequences for strong nonradial mass motions and ultimately for an explosion. Moreover, energy transfer to the stellar medium around the neutrinospheres through nucleon recoil in scattering reactions of heavy-lepton neutrinos also enhances the mentioned effects. Together with previous pseudo-Newtonian models, the presented relativistic calculations suggest that the treatment of gravity and energy-exchanging neutrino interactions can make differences of even 50%-100% in some quantities and is likely to contribute to a finally successful explosion mechanism on no minor level than hydrodynamical differences between different dimensions.

  14. Magmatic degassing at Erta 'Ale volcano, Ethiopia

    NASA Astrophysics Data System (ADS)

    Sawyer, G. M.; Oppenheimer, C.; Tsanev, V. I.; Yirgu, G.

    2008-12-01

    Here we report measurements of the chemical composition and flux of gas emitted from the central lava lake at Erta 'Ale volcano (Ethiopia) made on 15 October 2005. We determined an average SO 2 flux of ˜ 0.69 ± 0.17 kg s - 1 using zenith sky ultraviolet spectroscopy of the plume, and molar proportions of magmatic H 2O, CO 2, SO 2, CO, HCl and HF gases to be 93.58, 3.66, 2.47, 0.06, 0.19 and 0.04%, respectively, by open-path Fourier transform infrared (FTIR) spectrometry. Together, these data imply fluxes of 7.3, 0.7, 0.008, 0.03 and 0.004 kg s - 1 for H 2O, CO 2, CO, HCl and HF, respectively. These are the first FTIR spectroscopic observations at Erta 'Ale, and are also some of the very few gas measurements made at the volcano since the early 1970s (Gerlach, T.M., 1980b. Investigation of volcanic gas analyses and magma outgassing from Erta 'Ale lava lake, Afar, Ethiopia. Journal of Volcanology and Geothermal Research, 7(3-4): 415-441). We identify significant increases in the proportion of H 2O in the plume with respect to both CO 2 and SO 2 across this 30-year interval, which we attribute to the depletion of volatiles in magma that sourced effusive eruptions during the early 1970s and/or to fractional magma degassing between the two active pit craters located in the summit caldera.

  15. Cookoff Response of PBXN-109: Material Characterization and ALE3D Thermal Predictions

    SciTech Connect

    McClelland, M A; Tran, T D; Cunningham, B J; Weese, R K; Maienschein, J L

    2001-05-29

    Materials properties measurements are made for the RDX-based explosive, PBXN-109, and initial ALE3D model predictions are given for the cookoff temperature in a U.S. Navy test. This work is part of an effort in the U.S. Navy and Department of Energy (DOE) laboratories to understand the thermal explosion behavior of this material. Benchmark cookoff experiments are being performed by the U.S. Navy to validate DOE materials models and computer codes. The ALE3D computer code can model the coupled thermal, mechanical, and chemical behavior of heating, ignition, and explosion in cookoff tests. In our application, a standard three-step step model is selected for the chemical kinetics. The strength behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the Equation Of State (EOS) for the solid and gas species, respectively. Materials characterization measurements are given for thermal expansion, heat capacity, shear modulus, bulk modulus, and One-Dimensional-Time-to-Explosion (ODTX). These measurements and those of the other project participants are used to determine parameters in the ALE3D chemical, mechanical, and thermal models. Time-dependent, two-dimensional results are given for the temperature and material expansion. The results show predicted cookoff temperatures slightly higher than the measured values.

  16. Cookoff Response of PBXN-109: Material Characterization and ALE3D Thermal Predictions

    SciTech Connect

    McClelland, M A; Tran, T D; Cunningham, B J; Weese, R K; Maienschein, J L

    2001-08-21

    Materials properties measurements are made for the RDX-based explosive, PBXN-109, and initial ALE3D model predictions are given for the cookoff temperature in a U.S. Navy test. This work is part of an effort in the U.S. Navy and Department of Energy (DOE) laboratories to understand the thermal explosion behavior of this material. Benchmark cookoff experiments are being performed by the U.S. Navy to validate DOE materials models and computer codes. The ALE3D computer code can model the coupled thermal, mechanical, and chemical behavior of heating, ignition, and explosion in cookoff tests. In our application, a standard three-step step model is selected for the chemical kinetics. The strength behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the Equation Of State (EOS) for the solid and gas species, respectively. Materials characterization measurements are given for thermal expansion, heat capacity, shear modulus, bulk modulus, and One-Dimensional-Time-to-Explosion (ODTX). These measurements and those of the other project participants are used to determine parameters in the ALE3D chemical, mechanical, and thermal models. Time-dependent, two-dimensional results are given for the temperature and material expansion. The results show predicted cookoff temperatures slightly higher than the measured values.

  17. Modeling Explosive/Rock Interaction During Presplitting Using ALE Computational Methods

    SciTech Connect

    Jensen, Richard P.; Preece, Dale S.

    1999-04-27

    Arbitrary Lagrangian Eulerian (ALE) computational techniques allow treatment of gases, liq- uids, and solids in the same simulation. ALE methods include the ability to treat shockwaves in gases, liquids, and solids and the interaction of shockwaves with each other and with media from one of the other categories. ALE codes can also treat explosive detonation and the expansion of the explosive gases and their interaction with air and solids. ALEGRA is a 3-DALE code that has been developed at Sandia National Laboratories over the past few years. ALEGRA has been applied to a 2-D simulation of presplitting using decoupled explosives in rock blasting with very interesting results. The detonation of the explosive at the bottom of the hole sends a shock wave up the borehole driven by the explosive gas expanding into air. The explosive gas compresses the air against the stemming column where it rebounds and recompresses at the bottom of the borehole. This type of ringing takes several cycles to damp out. The explosively induced expansion of the borehole is also treated by ALEGRA as well as the shock wave imparted to the rock. The presentation of this paper will include sev- eral computer animations to aid in understanding this complex phenomenon.

  18. A new multi-dimensional general relativistic neutrino hydrodynamics code for core-collapse supernovae. IV. The neutrino signal

    SciTech Connect

    Müller, Bernhard; Janka, Hans-Thomas E-mail: bjmuellr@mpa-garching.mpg.de

    2014-06-10

    Considering six general relativistic, two-dimensional (2D) supernova (SN) explosion models of progenitor stars between 8.1 and 27 M {sub ☉}, we systematically analyze the properties of the neutrino emission from core collapse and bounce to the post-explosion phase. The models were computed with the VERTEX-COCONUT code, using three-flavor, energy-dependent neutrino transport in the ray-by-ray-plus approximation. Our results confirm the close similarity of the mean energies, (E), of ν-bar {sub e} and heavy-lepton neutrinos and even their crossing during the accretion phase for stars with M ≳ 10 M {sub ☉} as observed in previous 1D and 2D simulations with state-of-the-art neutrino transport. We establish a roughly linear scaling of 〈E{sub ν-bar{sub e}}〉 with the proto-neutron star (PNS) mass, which holds in time as well as for different progenitors. Convection inside the PNS affects the neutrino emission on the 10%-20% level, and accretion continuing beyond the onset of the explosion prevents the abrupt drop of the neutrino luminosities seen in artificially exploded 1D models. We demonstrate that a wavelet-based time-frequency analysis of SN neutrino signals in IceCube will offer sensitive diagnostics for the SN core dynamics up to at least ∼10 kpc distance. Strong, narrow-band signal modulations indicate quasi-periodic shock sloshing motions due to the standing accretion shock instability (SASI), and the frequency evolution of such 'SASI neutrino chirps' reveals shock expansion or contraction. The onset of the explosion is accompanied by a shift of the modulation frequency below 40-50 Hz, and post-explosion, episodic accretion downflows will be signaled by activity intervals stretching over an extended frequency range in the wavelet spectrogram.

  19. SALE: a simplified ALE computer program for fluid flow at all speeds

    SciTech Connect

    Amsden, A.A.; Ruppel, H.M.; Hirt, C.W.

    1980-06-01

    A simplified numerical fluid-dynamics computing technique is presented for calculating two-dimensional fluid flows at all speeds. It combines an implicit treatment of the pressure equation similar to that in the Implicit Continuous-fluid Eulerian (ICE) technique with the grid rezoning philosophy of the Arbitrary Lagrangian-Eulerian (ALE) method. As a result, it can handle flow speeds from supersonic to the incompressible limit in a grid that may be moved with the fluid in typical Lagrangian fashion, or held fixed in an Eulerian manner, or moved in some arbitrary way to give a continuous rezoning capability. The report describes the combined (ICEd-ALE) technique in the framework of the SALE (Simplified ALE) computer program, for which a general flow diagram and complete FORTRAN listing are included. A set of sample problems show how to use or modify the basic code for a variety of applications. Numerical listings are provided for a sample problem run with the SALE program.

  20. ALE3D Model Predictions and Materials Characterization for the Cookoff Response of PBXN-109

    SciTech Connect

    McClelland, M A; Maienschein, J L; Nichols, A L; Wardell, J F; Atwood, A I; Curran, P O

    2002-03-19

    ALE3D simulations are presented for the thermal explosion of PBXN-109 (RDX, AI, HTPB, DOA) in support of an effort by the U. S. Navy and Department of Energy (DOE) to validate computational models. The U.S. Navy is performing benchmark tests for the slow cookoff of PBXN-109 in a sealed tube. Candidate models are being tested using the ALE3D code, which can simulate the coupled thermal, mechanical, and chemical behavior during heating, ignition, and explosion. The strength behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the Equation Of State (EOS) for the solid and gas species, respectively. A void model is employed to represent the air in gaps. ALE3D model 'parameters are specified using measurements of thermal and mechanical properties including thermal expansion, heat capacity, shear modulus, and bulk modulus. A standard three-step chemical kinetics model is used during the thermal ramp, and a pressure-dependent burn front model is employed during the rapid expansion. Parameters for the three-step kinetics model are specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate of pristine and thermally damaged material are employed to determine parameters in the burn front model. Results are given for calculations in which heating, ignition, and explosion are modeled in a single simulation. We compare model results to measurements for the cookoff temperature and tube wall strain.

  1. TRHD: Three-temperature radiation-hydrodynamics code with an implicit non-equilibrium radiation transport using a cell-centered monotonic finite volume scheme on unstructured-grids

    NASA Astrophysics Data System (ADS)

    Sijoy, C. D.; Chaturvedi, S.

    2015-05-01

    Three-temperature (3T), unstructured-mesh, non-equilibrium radiation hydrodynamics (RHD) code have been developed for the simulation of intense thermal radiation or high-power laser driven radiative shock hydrodynamics in two-dimensional (2D) axis-symmetric geometries. The governing hydrodynamics equations are solved using a compatible unstructured Lagrangian method based on a control volume differencing (CVD) scheme. A second-order predictor-corrector (PC) integration scheme is used for the temporal discretization of the hydrodynamics equations. For the radiation energy transport, frequency averaged gray model is used in which the flux-limited diffusion (FLD) approximation is used to recover the free-streaming limit of the radiation propagation in optically thin regions. The proposed RHD model allows to have different temperatures for the electrons and ions. In addition to this, the electron and thermal radiation temperatures are assumed to be in non-equilibrium. Therefore, the thermal relaxation between the electrons and ions and the coupling between the radiation and matter energies are required to be computed self-consistently. For this, the coupled flux limited electron heat conduction and the non-equilibrium radiation diffusion equations are solved simultaneously by using an implicit, axis-symmetric, cell-centered, monotonic, nonlinear finite volume (NLFV) scheme. In this paper, we have described the details of the 2D, 3T, non-equilibrium RHD code developed along with a suite of validation test problems to demonstrate the accuracy and performance of the algorithms. We have also conducted a performance analysis with different linearity preserving interpolation schemes that are used for the evaluation of the nodal values in the NLFV scheme. Finally, in order to demonstrate full capability of the code implementation, we have presented the simulation of laser driven thin Aluminum (Al) foil acceleration. The simulation results are found to be in good agreement

  2. An AMR capable finite element diffusion solver for ALE hydrocodes [An AMR capable diffusion solver for ALE-AMR

    SciTech Connect

    Fisher, A. C.; Bailey, D. S.; Kaiser, T. B.; Eder, D. C.; Gunney, B. T. N.; Masters, N. D.; Koniges, A. E.; Anderson, R. W.

    2015-02-01

    Here, we present a novel method for the solution of the diffusion equation on a composite AMR mesh. This approach is suitable for including diffusion based physics modules to hydrocodes that support ALE and AMR capabilities. To illustrate, we proffer our implementations of diffusion based radiation transport and heat conduction in a hydrocode called ALE-AMR. Numerical experiments conducted with the diffusion solver and associated physics packages yield 2nd order convergence in the L2 norm.

  3. An analysis of options available for developing a common laser ray tracing package for Ares and Kull code frameworks

    SciTech Connect

    Weeratunga, S K

    2008-11-06

    Ares and Kull are mature code frameworks that support ALE hydrodynamics for a variety of HEDP applications at LLNL, using two widely different meshing approaches. While Ares is based on a 2-D/3-D block-structured mesh data base, Kull is designed to support unstructured, arbitrary polygonal/polyhedral meshes. In addition, both frameworks are capable of running applications on large, distributed-memory parallel machines. Currently, both these frameworks separately support assorted collections of physics packages related to HEDP, including one for the energy deposition by laser/ion-beam ray tracing. This study analyzes the options available for developing a common laser/ion-beam ray tracing package that can be easily shared between these two code frameworks and concludes with a set of recommendations for its development.

  4. Ship Hydrodynamics

    ERIC Educational Resources Information Center

    Lafrance, Pierre

    1978-01-01

    Explores in a non-mathematical treatment some of the hydrodynamical phenomena and forces that affect the operation of ships, especially at high speeds. Discusses the major components of ship resistance such as the different types of drags and ways to reduce them and how to apply those principles for the hovercraft. (GA)

  5. Radiation Hydrodynamics

    SciTech Connect

    Castor, J I

    2003-10-16

    The discipline of radiation hydrodynamics is the branch of hydrodynamics in which the moving fluid absorbs and emits electromagnetic radiation, and in so doing modifies its dynamical behavior. That is, the net gain or loss of energy by parcels of the fluid material through absorption or emission of radiation are sufficient to change the pressure of the material, and therefore change its motion; alternatively, the net momentum exchange between radiation and matter may alter the motion of the matter directly. Ignoring the radiation contributions to energy and momentum will give a wrong prediction of the hydrodynamic motion when the correct description is radiation hydrodynamics. Of course, there are circumstances when a large quantity of radiation is present, yet can be ignored without causing the model to be in error. This happens when radiation from an exterior source streams through the problem, but the latter is so transparent that the energy and momentum coupling is negligible. Everything we say about radiation hydrodynamics applies equally well to neutrinos and photons (apart from the Einstein relations, specific to bosons), but in almost every area of astrophysics neutrino hydrodynamics is ignored, simply because the systems are exceedingly transparent to neutrinos, even though the energy flux in neutrinos may be substantial. Another place where we can do ''radiation hydrodynamics'' without using any sophisticated theory is deep within stars or other bodies, where the material is so opaque to the radiation that the mean free path of photons is entirely negligible compared with the size of the system, the distance over which any fluid quantity varies, and so on. In this case we can suppose that the radiation is in equilibrium with the matter locally, and its energy, pressure and momentum can be lumped in with those of the rest of the fluid. That is, it is no more necessary to distinguish photons from atoms, nuclei and electrons, than it is to distinguish

  6. Bacterial Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Lauga, Eric

    2016-01-01

    Bacteria predate plants and animals by billions of years. Today, they are the world's smallest cells, yet they represent the bulk of the world's biomass and the main reservoir of nutrients for higher organisms. Most bacteria can move on their own, and the majority of motile bacteria are able to swim in viscous fluids using slender helical appendages called flagella. Low-Reynolds number hydrodynamics is at the heart of the ability of flagella to generate propulsion at the micrometer scale. In fact, fluid dynamic forces impact many aspects of bacteriology, ranging from the ability of cells to reorient and search their surroundings to their interactions within mechanically and chemically complex environments. Using hydrodynamics as an organizing framework, I review the biomechanics of bacterial motility and look ahead to future challenges.

  7. ALE3D Model Predictions and Experimental Analysis of the Cookoff Response of Comp B*

    SciTech Connect

    Maienschein, J L; McClelland, M A; Wardell, J F; Reaugh, J E; Nichols, A L; Tran, T D

    2003-11-24

    ALE3D simulations are presented for the thermal explosion of Comp B (RDX,TNT) in a Scaled Thermal Explosion Experiment (STEX). Candidate models and numerical strategies are being tested using the ALE3D code which simulates the coupled thermal, mechanical, and chemical behavior during heating, ignition, and explosion. The mechanical behavior of the solid constituents is represented by a Steinberg-Guinan model while polynomial and gamma-law expressions are used for the equation of state of the solid and gas species, respectively. A gamma-law model is employed for the air in gaps, and a mixed material model is used for the interface between air and explosive. A three-step chemical kinetics model is used for each of the RDX and TNT reaction sequences during the heating and ignition phases, and a pressure-dependent deflagration model is employed during the rapid expansion. Parameters for the three-step kinetics model are specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate are employed to determine parameters in the burn front model. We compare model predictions to measurements for temperature fields, ignition temperature, and tube wall strain during the heating, ignition, and explosive phases.

  8. Soil Sampling to Demonstrate Compliance with Department of Energy Radiological Clearance Requirements for the ALE Unit of the Hanford Reach National Monument

    SciTech Connect

    Fritz, Brad G.; Dirkes, Roger L.; Napier, Bruce A.

    2007-04-01

    The Hanford Reach National Monument consists of several units, one of which is the Fitzner/Eberhardt Arid Lands Ecology Reserve (ALE) Unit. This unit is approximately 311 km2 of shrub-steppe habitat located to the south and west of Highway 240. To fulfill internal U. S. Department of Energy (DOE) requirements prior to any radiological clearance of land, DOE must evaluate the potential for residual radioactive contamination on this land and determine compliance with the requirements of DOE Order 5400.5. Historical soil monitoring conducted on ALE indicated soil concentrations of radionuclides were well below the Authorized Limits. However, the historical sampling was done at a limited number of sampling locations. Therefore, additional soil sampling was conducted to determine if the concentrations of radionuclides in soil on the ALE Unit were below the Authorized Limits. This report contains the results of 50 additional soil samples. The 50 soil samples collected from the ALE Unit all had concentrations of radionuclides far below the Authorized Limits. The average concentrations for all detectable radionuclides were less than the estimated Hanford Site background. Furthermore, the maximum observed soil concentrations for the radionuclides included in the Authorized Limits would result in a potential annual dose of 0.14 mrem assuming the most probable use scenario, a recreational visitor. This potential dose is well below the DOE 100-mrem per year dose limit for a member of the public. Spatial analysis of the results indicated no observable statistically significant differences between radionuclide concentrations across the ALE Unit. Furthermore, the results of the biota dose assessment screen, which used the ResRad Biota code, indicated that the concentrations of radionuclides in ALE Unit soil pose no significant health risk to biota.

  9. A Wavelet Based Dissipation Method for ALE Schemes

    SciTech Connect

    Cabot, B; Eliason, D.; Jameson, L.

    2000-07-01

    Wavelet analysis is natural tool to detect the presence of numerical noise, shocks and other features which might drive a calculation to become unstable. Here we suggest ways where wavelets can be used effectively to define a dissipation flag to replace dissipation flags traditionally used in ALE numerical schemes.

  10. Second order multidimensional sign-preserving remapping for ALE methods

    SciTech Connect

    Hill, Ryan N; Szmelter, J.

    2010-12-15

    A second-order conservative sign-preserving remapping scheme for Arbitrary Lagrangian-Eulerian (ALE) methods is developed utilising concepts of the Multidimensional Positive Definite Advection Transport Algorithm (MPDATA). The algorithm is inherently multidimensional, and so does not introduce splitting errors. The remapping is implemented in a two-dimensional, finite element ALE solver employing staggered quadrilateral meshes. The MPDATA remapping uses a finite volume discretization developed for volume coordinates. It is applied for the remapping of density and internal energy arranged as cell centered, and velocity as nodal, dependent variables. In the paper, the advection of scalar fields is examined first for test cases with prescribed mesh movement. A direct comparison of MPDATA with the performance of the van Leer MUSCL scheme indicates advantages of a multidimensional approach. Furthermore, distinctly different performance between basic MPDATA and the infinite gauge option is illustrated using benchmarks involving transport of a sign changing velocity field. Further development extends the application of MPDATA remapping to the full ALE solver with a staggered mesh arrangement for density, internal energy and momentum using volume coordinates. At present, two options of the algorithm - basic and infinite gauge - are implemented. To ensure a meaningful assessment, an identical Lagrangian solver and computational mesh update routines are used with either MPDATA or van Leer MUSCL remapping. The evaluation places particular focus on the abilities of both schemes to accurately model multidimensional problems. Theoretical considerations are supported with numerical examples. In addition to the prescribed mesh movement cases for advection of scalars, the demonstrations include two-dimensional Eulerian and ALE flow simulations on quadrilateral meshes with both fixed and variable timestep control. The key comparisons include the standard test cases of Sod and Noh

  11. Modeling the Structural Response from a Propagating High Explosive Using Smooth Particle Hydrodynamics

    SciTech Connect

    Margraf, J

    2012-06-12

    This report primarily concerns the use of two massively parallel finite element codes originally written and maintained at Lawrence Livermore National Laboratory. ALE3D is an explicit hydrodynamics code commonly employed to simulate wave propagation from high energy scenarios and the resulting interaction with nearby structures. This coupled response ensures that a structure is accurately applied with a blast loading varying both in space and time. Figure 1 illustrates the radial outward propagation of a pressure wave due to a center detonated spherical explosive originating from the lower left. The radial symmetry seen in this scenario is lost when instead a cylindrocal charge is detonated. Figure 2 indicates that a stronger, faster traveling pressure wave occurs in the direction of the normal axis to the cylinder. The ALE3D name is derived because of the use of arbitrary-Lagrange-Eulerian elements in which the mesh is allowed to advect; a process through which the mesh is modified to alleviate tanlging and general mesh distortion often cuased by high energy scenarios. The counterpart to an advecting element is a Lagrange element, whose mesh moves with the material. Ideally all structural components are kept Lagrange as long as possible to preserve accuracy of material variables and minimize advection related errors. Advection leads to mixed zoning, so using structural Lagrange elements also improves the visualization when post processing the results. A simplified representation of the advection process is shown in Figure 3. First the mesh is distorted due to material motion during the Lagrange step. The mesh is then shifted to an idealized and less distorted state to prevent irregular zones caused by the Lagrange motion. Lastly, the state variables are remapped to the elements of the newly constructed mesh. Note that Figure 3 represents a purely Eulerian mesh relaxation because the mesh is relocated back to the pre-Lagrange position. This is the case when the

  12. AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource.

    PubMed

    Scarpato, Margherita; Esposito, Roberta; Evangelista, Daniela; Aprile, Marianna; Ambrosio, Maria Rosaria; Angelini, Claudia; Ciccodicola, Alfredo; Costa, Valerio

    2014-01-01

    Transcriptome studies have shown the pervasive nature of transcription, demonstrating almost all the genes undergo alternative splicing. Accurately annotating all transcripts of a gene is crucial. It is needed to understand the impact of mutations on phenotypes, to shed light on genetic and epigenetic regulation of mRNAs and more generally to widen our knowledge about cell functionality and tissue diversity. RNA-sequencing (RNA-Seq), and the other applications of the next-generation sequencing, provides precious data to improve annotations' accuracy, simultaneously creating issues related to the variety, complexity and the size of produced data. In this 'scenario', the lack of user-friendly resources, easily accessible to researchers with low skills in bioinformatics, makes difficult to retrieve complete information about one or few genes without browsing a jungle of databases. Concordantly, the increasing amount of data from 'omics' technologies imposes to develop integrated databases merging different data formats coming from distinct but complementary sources. In light of these considerations, and given the wide interest in studying Down syndrome-a genetic condition due to the trisomy of human chromosome 21 (HSA21)-we developed an integrated relational database and a web interface, named ALE-HSA21 (AnaLysis of Expression on HSA21), accessible at http://bioinfo.na.iac.cnr.it/ALE-HSA21. This comprehensive and user-friendly web resource integrates-for all coding and noncoding transcripts of chromosome 21-existing gene annotations and transcripts identified de novo through RNA-Seq analysis with predictive computational analysis of regulatory sequences. Given the role of noncoding RNAs and untranslated regions of coding genes in key regulatory mechanisms, ALE-HSA21 is also an interesting web-based platform to investigate such processes. The 'transcript-centric' and easily-accessible nature of ALE-HSA21 makes this resource a valuable tool to rapidly retrieve data at

  13. AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource

    PubMed Central

    Scarpato, Margherita; Esposito, Roberta; Evangelista, Daniela; Aprile, Marianna; Ambrosio, Maria Rosaria; Angelini, Claudia; Ciccodicola, Alfredo; Costa, Valerio

    2014-01-01

    Transcriptome studies have shown the pervasive nature of transcription, demonstrating almost all the genes undergo alternative splicing. Accurately annotating all transcripts of a gene is crucial. It is needed to understand the impact of mutations on phenotypes, to shed light on genetic and epigenetic regulation of mRNAs and more generally to widen our knowledge about cell functionality and tissue diversity. RNA-sequencing (RNA-Seq), and the other applications of the next-generation sequencing, provides precious data to improve annotations' accuracy, simultaneously creating issues related to the variety, complexity and the size of produced data. In this ‘scenario’, the lack of user-friendly resources, easily accessible to researchers with low skills in bioinformatics, makes difficult to retrieve complete information about one or few genes without browsing a jungle of databases. Concordantly, the increasing amount of data from ‘omics’ technologies imposes to develop integrated databases merging different data formats coming from distinct but complementary sources. In light of these considerations, and given the wide interest in studying Down syndrome—a genetic condition due to the trisomy of human chromosome 21 (HSA21)—we developed an integrated relational database and a web interface, named ALE-HSA21 (AnaLysis of Expression on HSA21), accessible at http://bioinfo.na.iac.cnr.it/ALE-HSA21. This comprehensive and user-friendly web resource integrates—for all coding and noncoding transcripts of chromosome 21—existing gene annotations and transcripts identified de novo through RNA-Seq analysis with predictive computational analysis of regulatory sequences. Given the role of noncoding RNAs and untranslated regions of coding genes in key regulatory mechanisms, ALE-HSA21 is also an interesting web-based platform to investigate such processes. The ‘transcript-centric’ and easily-accessible nature of ALE-HSA21 makes this resource a valuable tool to

  14. Mesh size and code option effects of strength calculations

    SciTech Connect

    Kaul, Ann M

    2010-12-10

    Modern Lagrangian hydrodynamics codes include numerical methods which allow calculations to proceed past the point obtainable by a purely Lagrangian scheme. These options can be employed as the user deems necessary to 'complete' a calculation. While one could argue that any calculation is better than none, to truly understand the calculated results and their relationship to physical reality, the user needs to understand how their runtime choices affect the calculated results. One step toward this goal is to understand the effect of each runtime choice on particular pieces of the code physics. This paper will present simulation results for some experiments typically used for strength model validation. Topics to be covered include effect of mesh size, use of various ALE schemes for mesh detangling, and use of anti-hour-glassing schemes. Experiments to be modeled include the lower strain rate ({approx} 10{sup 4} s{sup -1}) gas gun driven Taylor impact experiments and the higher strain rate ({approx} 10{sup 5}-10{sup 6} s{sup -1}) HE products driven perturbed plate experiments. The necessary mesh resolution and the effect of the code runtime options are highly dependent on the amount of localization of strain and stress in each experiment. In turn, this localization is dependent on the geometry of the experimental setup and the drive conditions.

  15. Hydrodynamic supercontinuum.

    PubMed

    Chabchoub, A; Hoffmann, N; Onorato, M; Genty, G; Dudley, J M; Akhmediev, N

    2013-08-01

    We report the experimental observation of multi-bound-soliton solutions of the nonlinear Schrödinger equation (NLS) in the context of hydrodynamic surface gravity waves. Higher-order N-soliton solutions with N=2, 3 are studied in detail and shown to be associated with self-focusing in the wave group dynamics and the generation of a steep localized carrier wave underneath the group envelope. We also show that for larger input soliton numbers, the wave group experiences irreversible spectral broadening, which we refer to as a hydrodynamic supercontinuum by analogy with optics. This process is shown to be associated with the fission of the initial multisoliton into individual fundamental solitons due to higher-order nonlinear perturbations to the NLS. Numerical simulations using an extended NLS model described by the modified nonlinear Schrödinger equation, show excellent agreement with experiment and highlight the universal role that higher-order nonlinear perturbations to the NLS play in supercontinuum generation. PMID:23952405

  16. ALE shock calculations using a stabilized serendipity rezoning scheme

    SciTech Connect

    Budge, K.G.

    1991-01-01

    A rezone stencil for ALE shock calculations has been developed based on a stabilized variant of the serendipity element. This rezone stencil is compared to the Winslow rezone stencil. Unlike the Winslow stencil, which equalizes element volumes as well as node angles, the serendipity stencil equalizes node angles only. This may be advantageous for calculations involving strong density gradients such as those associated with shock compression. 5 refs., 5 figs.

  17. Radiation hydrodynamics

    SciTech Connect

    Pomraning, G.C.

    1982-12-31

    This course was intended to provide the participant with an introduction to the theory of radiative transfer, and an understanding of the coupling of radiative processes to the equations describing compressible flow. At moderate temperatures (thousands of degrees), the role of the radiation is primarily one of transporting energy by radiative processes. At higher temperatures (millions of degrees), the energy and momentum densities of the radiation field may become comparable to or even dominate the corresponding fluid quantities. In this case, the radiation field significantly affects the dynamics of the fluid, and it is the description of this regime which is generally the charter of radiation hydrodynamics. The course provided a discussion of the relevant physics and a derivation of the corresponding equations, as well as an examination of several simplified models. Practical applications include astrophysics and nuclear weapons effects phenomena.

  18. Regional and local tectonics at Erta Ale caldera, Afar (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Acocella, Valerio

    2006-10-01

    Erta Ale volcano lies along the on-shore Red Sea Rift (northern Afar, Ethiopia), separating the Nubia and Danakil plates. Erta Ale has a NNW-SSE elongated caldera, with a subvertical rim scarp, hosting a lava lake. Structural field work was aimed at defining the deformation pattern around the caldera. The caldera consists of along-rim and across-rim structures, resulting from local and regional (maximum extension ˜NE-SW) stress fields, respectively. These structures cross-cut each other at high angles, suggesting that the two stress fields remain distinct, each prevailing during rifting or caldera collapse. The local along-rim extensional fractures are gravity-driven structures that formed due to the retreat of the caldera wall after collapse, and are confined to the region of caldera subsidence. The across-rim structures are mainly located to the N and S of the caldera, where they form rift zones each accommodating a similar amount of extension (˜6.3 m), but displaying different trends and extension directions. Analogue models of interacting fractures are consistent with the Southern Rift being representative of the regional fault kinematics, while the Northern Rift is a local perturbation, resulting from the interaction between two right-stepping rift segments along the Erta Ale Range.

  19. SPH accuracy improvement through the combination of a quasi-Lagrangian shifting transport velocity and consistent ALE formalisms

    NASA Astrophysics Data System (ADS)

    Oger, G.; Marrone, S.; Le Touzé, D.; de Leffe, M.

    2016-05-01

    This paper addresses the accuracy of the weakly-compressible SPH method. Interpolation defects due to the presence of anisotropic particle structures inherent to the Lagrangian character of the Smoothed Particle Hydrodynamics (SPH) method are highlighted. To avoid the appearance of these structures which are detrimental to the quality of the simulations, a specific transport velocity is introduced and its inclusion within an Arbitrary Lagrangian Eulerian (ALE) formalism is described. Unlike most of existing particle disordering/shifting methods, this formalism avoids the formation of these anisotropic structures while a full consistency with the original Euler or Navier-Stokes equations is maintained. The gain in accuracy, convergence and numerical diffusion of this formalism is shown and discussed through its application to various challenging test cases.

  20. A NEW MULTI-DIMENSIONAL GENERAL RELATIVISTIC NEUTRINO HYDRODYNAMICS CODE OF CORE-COLLAPSE SUPERNOVAE. III. GRAVITATIONAL WAVE SIGNALS FROM SUPERNOVA EXPLOSION MODELS

    SciTech Connect

    Mueller, Bernhard; Janka, Hans-Thomas; Marek, Andreas E-mail: thj@mpa-garching.mpg.de

    2013-03-20

    We present a detailed theoretical analysis of the gravitational wave (GW) signal of the post-bounce evolution of core-collapse supernovae (SNe), employing for the first time relativistic, two-dimensional explosion models with multi-group, three-flavor neutrino transport based on the ray-by-ray-plus approximation. The waveforms reflect the accelerated mass motions associated with the characteristic evolutionary stages that were also identified in previous works: a quasi-periodic modulation by prompt post-shock convection is followed by a phase of relative quiescence before growing amplitudes signal violent hydrodynamical activity due to convection and the standing accretion shock instability during the accretion period of the stalled shock. Finally, a high-frequency, low-amplitude variation from proto-neutron star (PNS) convection below the neutrinosphere appears superimposed on the low-frequency trend associated with the aspherical expansion of the SN shock after the onset of the explosion. Relativistic effects in combination with detailed neutrino transport are shown to be essential for quantitative predictions of the GW frequency evolution and energy spectrum, because they determine the structure of the PNS surface layer and its characteristic g-mode frequency. Burst-like high-frequency activity phases, correlated with sudden luminosity increase and spectral hardening of electron (anti-)neutrino emission for some 10 ms, are discovered as new features after the onset of the explosion. They correspond to intermittent episodes of anisotropic accretion by the PNS in the case of fallback SNe. We find stronger signals for more massive progenitors with large accretion rates. The typical frequencies are higher for massive PNSs, though the time-integrated spectrum also strongly depends on the model dynamics.

  1. A hydrodynamic approach to cosmology - Methodology

    NASA Technical Reports Server (NTRS)

    Cen, Renyue

    1992-01-01

    The present study describes an accurate and efficient hydrodynamic code for evolving self-gravitating cosmological systems. The hydrodynamic code is a flux-based mesh code originally designed for engineering hydrodynamical applications. A variety of checks were performed which indicate that the resolution of the code is a few cells, providing accuracy for integral energy quantities in the present simulations of 1-3 percent over the whole runs. Six species (H I, H II, He I, He II, He III) are tracked separately, and relevant ionization and recombination processes, as well as line and continuum heating and cooling, are computed. The background radiation field is simultaneously determined in the range 1 eV to 100 keV, allowing for absorption, emission, and cosmological effects. It is shown how the inevitable numerical inaccuracies can be estimated and to some extent overcome.

  2. Grid and Zone Selection for AMR and ALE Schemes

    SciTech Connect

    Jameson, L; Johnson, J; Bihari, B; Eliason, D; Peyser, T

    2002-09-11

    Numerical algorithms are based fundamentally on polynomial interpolation. In regions of the computational domain where a low order polynomial fits the data well one will find small errors in the computed quantities. Therefore, in order to design robust methods for grid selection for AMR schemes or zone selection for ALE schemes, one needs some information on the local polynomial structure of the fields being computed. We provide here algorithms and software for selecting zones based on local estimates of polynomial interpolation error. The algorithms are based on multiresolution and wavelet analysis.

  3. Biotransformation of hop aroma terpenoids by ale and lager yeasts.

    PubMed

    King, Andrew J; Dickinson, J Richard

    2003-03-01

    Terpenoids are important natural flavour compounds, which are introduced to beer via hopping. It has been shown recently that yeasts are able to biotransform some monoterpene alcohols. As a first step towards examining whether yeasts are capable of altering hop terpenoids during the brewing of beer, we investigated whether they were transformed when an ale and lager yeast were cultured in the presence of a commercially available syrup. Both yeasts transformed the monoterpene alcohols geraniol and linalool. The lager yeast also produced acetate esters of geraniol and citronellol. The major terpenoids of hop oil, however, were not biotransformed. Oxygenated terpenoids persisted much longer than the alkenes. PMID:12702246

  4. Compressible Astrophysics Simulation Code

    2007-07-18

    This is an astrophysics simulation code involving a radiation diffusion module developed at LLNL coupled to compressible hydrodynamics and adaptive mesh infrastructure developed at LBNL. One intended application is to neutrino diffusion in core collapse supernovae.

  5. The Quantum Hydrodynamic Description of Tunneling

    SciTech Connect

    Kendrick, Brian K.

    2012-06-15

    The quantum hydrodynamic approach is based on the de Broglie-Bohm formulation of quantum mechanics. The resulting fluid-like equations of motion describe the flow of probability and an accurate solution to these equations is equivalent to solving the time-dependent Schroedinger equation. Furthermore, the hydrodynamic approach provides new insight into the mechanisms as well as an alternative computational approach for treating tunneling phenomena. New concepts include well-defined 'quantum trajectories', 'quantum potential', and 'quantum force' all of which have classical analogues. The quantum potential and its associated force give rise to all quantum mechanical effects such as zero point energy, tunneling, and interference. A new numerical approach called the Iterative Finite Difference Method (IFDM) will be discussed. The IFDM is used to solve the set of non-linear coupled hydrodynamic equations. It is 2nd-order accurate in both space and time and exhibits exponential convergence with respect to the iteration count. The stability and computational efficiency of the IFDM is significantly improved by using a 'smart' Eulerian grid which has the same computational advantages as a Lagrangian or Arbitrary Lagrangian Eulerian (ALE) grid. The IFDM is also capable of treating anharmonic potentials. Example calculations using the IFDM will be presented which include: a one-dimensional Gaussian wave packet tunneling through an Eckart barrier, a one-dimensional bound-state Morse oscillator, and a two-dimensional (2D) model collinear reaction using an anharmonic potential energy surface. Approximate treatments of the quantum hydrodynamic equations will also be discussed which could allow scaling of the calculations to hundreds of degrees of freedom which is important for treating tunneling phenomena in condensed phase systems.

  6. Developing an Argument Learning Environment Using Agent-Based ITS (ALES)

    ERIC Educational Resources Information Center

    Abbas, Safia; Sawamura, Hajime

    2009-01-01

    This paper presents an agent-based educational environment to teach argument analysis (ALES). The idea is based on the Argumentation Interchange Format Ontology (AIF)using "Walton Theory". ALES uses different mining techniques to manage a highly structured arguments repertoire. This repertoire was designed, developed and implemented by us. Our aim…

  7. Analysing Interlanguage Stages ALEs Pass through in the Acquisition of the Simple Past Tense

    ERIC Educational Resources Information Center

    Mourssi, Anwar

    2012-01-01

    Building on previous studies of cross-linguistic influence (CLI) on SLA, and principled criteria for confirming its existence in L2 data, an empirical study was run on 74 Arab learners of English (ALEs). A detailed analysis was made of interlanguage stages of the simple past tense forms in 222 written texts produced by ALEs in the classroom…

  8. HALFBREED, an extended capability version of the YAQUI code

    SciTech Connect

    Park, J.E.

    1985-06-01

    For 14 months, beginning in the fall of 1972, the writer was a visiting scientist at the Los Alamos National Laboratory, New Mexico. This memo was prepared at that time to describe several special modifications to the ICE-ALE computer code, YAQUI. The modified code was dubbed HALFBREED.

  9. Modeling thermally driven energetic response of high explosives in ALE3D

    SciTech Connect

    Aro, C.; McCallen, R.C.; Neely, R.; Nichols, A.L. III; Sharp, R.

    1998-10-01

    The authors have improved their ability to model the response of energetic materials to thermal stimuli and the processes involved in the energetic response. Traditionally, the analyses of energetic materials have involved coupled thermal transport/chemical reaction codes. This provides only a reasonable estimate of the time and location of ensuing rapid reaction. To predict the violence of the reaction, the mechanical motion must be included in the wide range of time scales associated with the thermal hazard. The ALE3D code has been modified to assess the hazards associated with heating energetic materials in weapons by coupling to thermal transport model and chemistry models. They have developed an implicit time step option to efficiently and accurately compute the hours of heating to reaction of the energetic material. Since, on these longer time scales materials can be expected to have significant motion, it is even more important to provide high-order advection for all components, including the chemical species. They show two examples of coupled thermal/mechanical/chemical models of energetic materials in thermal environments.

  10. ALE-Phase-field simulations of floating particles

    NASA Astrophysics Data System (ADS)

    Yue, Pengtao

    2015-11-01

    In this talk, we will present a hybrid Arbitrary-Lagrangian-Eulerian(ALE)-Phase-Field method for the direct numerical simulation of multiphase flows where fluid interfaces, moving rigid particles, and moving contact lines coexist. Practical applications include Pickering emulsions, froth flotation, and biolocomotion at fluid interface. An ALE algorithm based on the finite element method and an adaptive moving mesh is used to track the moving boundaries of rigid particles. A phase-field method based on the same moving mesh is used to capture the fluid interfaces; meanwhile, the Cahn-Hilliard diffusion automatically takes care of the stress singularity at the moving contact line when a fluid interface intersects a solid surface. To fully resolve the diffuse interface, mesh is locally refined at the fluid interface. All the governing equations, i.e., equations for fluids, interfaces, and particles, are solved implicitly in a unified variational framework. In the end we will present some recent results on the water entry problem and the capillary interaction between floating particles (a.k.a. the Cheerios effect), with a focus on the effect of contact-line dynamics.

  11. Matrix theory on ALE spaces and wrapped membranes

    NASA Astrophysics Data System (ADS)

    Berenstein, David; Corrado, Richard

    1998-09-01

    We study the properties of wrapped membranes in matrix theory on ALE spaces. We show that the only BPS bound states of wrapped membranes that can form are roots of the A- D- E group. We determine a bound on the energy of a bound state and find the correct dependence on the blow-up parameters and longitudinal momentum expected from M-theory. For the An-1 series, we construct explicit classical solutions for the wrapped membrane bound states. These states have a very rich structure and have a natural interpretation in terms of non-commutative geometry. In the A1 case, we examine the spectrum of excitations around the wrapped membrane solution and provide an explicit calculation of their energies. The results agree exactly with supergravity calculations.

  12. A Cell-Centered Multiphase ALE Scheme With Structural Coupling

    SciTech Connect

    Dunn, Timothy Alan

    2012-04-16

    A novel computational scheme has been developed for simulating compressible multiphase flows interacting with solid structures. The multiphase fluid is computed using a Godunov-type finite-volume method. This has been extended to allow computations on moving meshes using a direct arbitrary-Eulerian- Lagrangian (ALE) scheme. The method has been implemented within a Lagrangian hydrocode, which allows modeling the interaction with Lagrangian structural regions. Although the above scheme is general enough for use on many applications, the ultimate goal of the research is the simulation of heterogeneous energetic material, such as explosives or propellants. The method is powerful enough for application to all stages of the problem, including the initial burning of the material, the propagation of blast waves, and interaction with surrounding structures. The method has been tested on a number of canonical multiphase tests as well as fluid-structure interaction problems.

  13. The Montana ALE (Autonomous Lunar Excavator) Systems Engineering Report

    NASA Technical Reports Server (NTRS)

    Hull, Bethanne J.

    2012-01-01

    On May 2 1-26, 20 12, the third annual NASA Lunabotics Mining Competition will be held at the Kennedy Space Center in Florida. This event brings together student teams from universities around the world to compete in an engineering challenge. Each team must design, build and operate a robotic excavator that can collect artificial lunar soil and deposit it at a target location. Montana State University, Bozeman, is one of the institutions selected to field a team this year. This paper will summarize the goals of MSU's lunar excavator project, known as the Autonomous Lunar Explorer (ALE), along with the engineering process that the MSU team is using to fulfill these goals, according to NASA's systems engineering guidelines.

  14. Thermal imaging of Erta 'Ale active lava lake (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Spampinato, L.; Oppenheimer, C.; Calvari, S.; Cannata, A.; Montalto, P.

    2009-04-01

    Active lava lakes represent the uppermost portion of a volume of convective magma exposed to the atmosphere, and provide open windows on magma dynamics within shallow reservoirs. Erta ‘Ale volcano located within the Danakil Depression in Ethiopia, hosts one of the few permanent convecting lava lakes, active at least since the last century. We report here the main features of Erta ‘Ale lake surface investigated using a hand-held infrared thermal camera between 11 and 12 November 2006. In both days, the lake surface was mainly characterized by efficient magma circulation reflecting in the formation of well-marked incandescent cracks and wide crust plates. These crossed the lake from the upwelling to the downwelling margin with mean speeds ranging between 0.01 and 0.15 m s-1. Hot spots opened eventually in the middle of crust plates and/or along cracks. These produced explosive activity lasting commonly between ~10 and 200 sec. Apparent temperatures at cracks ranged between ~700 and 1070˚C, and between ~300 and 500˚C at crust plates. Radiant power output of the lake varied between ~45 and 76 MW according to the superficial activity and continuous resurfacing of the lake. Time series analysis of the radiant power output data reveals cyclicity with a period of ~10 min. The combination of visual and thermal observations with apparent mean temperatures and convection rates allows us to interpret these signals as the periodic release of hot overpressured gas bubbles at the lake surface.

  15. Hydrodynamics from Landau initial conditions

    SciTech Connect

    Sen, Abhisek; Gerhard, Jochen; Torrieri, Giorgio; Read jr, Kenneth F.; Wong, Cheuk-Yin

    2015-01-01

    We investigate ideal hydrodynamic evolution, with Landau initial conditions, both in a semi-analytical 1+1D approach and in a numerical code incorporating event-by-event variation with many events and transverse density inhomogeneities. The object of the calculation is to test how fast would a Landau initial condition transition to a commonly used boost-invariant expansion. We show that the transition to boost-invariant flow occurs too late for realistic setups, with corrections of O (20 - 30%) expected at freezeout for most scenarios. Moreover, the deviation from boost-invariance is correlated with both transverse flow and elliptic flow, with the more highly transversely flowing regions also showing the most violation of boost invariance. Therefore, if longitudinal flow is not fully developed at the early stages of heavy ion collisions, 2+1 dimensional hydrodynamics is inadequate to extract transport coefficients of the quark-gluon plasma. Based on [1, 2

  16. Hierarchical Material Models for Fragmentation Modeling in NIF-ALE-AMR

    SciTech Connect

    Fisher, A; Masters, N; Koniges, A; Anderson, R; Gunney, B; Wang, P; Becker, R; Benson, D; Dixit, P

    2007-08-28

    Fragmentation is a fundamental process that naturally spans micro to macroscopic scales. Recent advances in algorithms, computer simulations, and hardware enable us to connect the continuum to microstructural regimes in a real simulation through a heterogeneous multiscale mathematical model. We apply this model to the problem of predicting how targets in the NIF chamber dismantle, so that optics and diagnostics can be protected from damage. The mechanics of the initial material fracture depend on the microscopic grain structure. In order to effectively simulate the fragmentation, this process must be modeled at the subgrain level with computationally expensive crystal plasticity models. However, there are not enough computational resources to model the entire NIF target at this microscopic scale. In order to accomplish these calculations, a hierarchical material model (HMM) is being developed. The HMM will allow fine-scale modeling of the initial fragmentation using computationally expensive crystal plasticity, while the elements at the mesoscale can use polycrystal models, and the macroscopic elements use analytical flow stress models. The HMM framework is built upon an adaptive mesh refinement (AMR) capability. We present progress in implementing the HMM in the NIF-ALE-AMR code. Additionally, we present test simulations relevant to NIF targets.

  17. Hierarchical Material Models for Fragmentation Modeling in NIF-ALE-AMR

    SciTech Connect

    Fisher, A C; Masters, N D; Dixit, P; Benson, D J; Koniges, A E; Anderson, R W; Gunney, B N; Wang, P; Becker, R

    2008-01-10

    Fragmentation is a fundamental process that naturally spans micro to macroscopic scales. Recent advances in algorithms, computer simulations, and hardware enable us to connect the continuum to microstructural regimes in a real simulation through a heterogeneous multiscale mathematical model. We apply this model to the problem of predicting how targets in the NIF chamber dismantle, so that optics and diagnostics can be protected from damage. The mechanics of the initial material fracture depend on the microscopic grain structure. In order to effectively simulate the fragmentation, this process must be modeled at the subgrain level with computationally expensive crystal plasticity models. However, there are not enough computational resources to model the entire NIF target at this microscopic scale. In order to accomplish these calculations, a hierarchical material model (HMM) is being developed. The HMM will allow fine-scale modeling of the initial fragmentation using computationally expensive crystal plasticity, while the elements at the mesoscale can use polycrystal models, and the macroscopic elements use analytical flow stress models. The HMM framework is built upon an adaptive mesh refinement (AMR) capability. We present progress in implementing the HMM in the NIF-ALE-AMR code. Additionally, we present test simulations relevant to NIF targets.

  18. Testing hydrodynamics schemes in galaxy disc simulations

    NASA Astrophysics Data System (ADS)

    Few, C. G.; Dobbs, C.; Pettitt, A.; Konstandin, L.

    2016-08-01

    We examine how three fundamentally different numerical hydrodynamics codes follow the evolution of an isothermal galactic disc with an external spiral potential. We compare an adaptive mesh refinement code (RAMSES), a smoothed particle hydrodynamics code (SPHNG), and a volume-discretized mesh-less code (GIZMO). Using standard refinement criteria, we find that RAMSES produces a disc that is less vertically concentrated and does not reach such high densities as the SPHNG or GIZMO runs. The gas surface density in the spiral arms increases at a lower rate for the RAMSES simulations compared to the other codes. There is also a greater degree of substructure in the SPHNG and GIZMO runs and secondary spiral arms are more pronounced. By resolving the Jeans length with a greater number of grid cells, we achieve more similar results to the Lagrangian codes used in this study. Other alterations to the refinement scheme (adding extra levels of refinement and refining based on local density gradients) are less successful in reducing the disparity between RAMSES and SPHNG/GIZMO. Although more similar, SPHNG displays different density distributions and vertical mass profiles to all modes of GIZMO (including the smoothed particle hydrodynamics version). This suggests differences also arise which are not intrinsic to the particular method but rather due to its implementation. The discrepancies between codes (in particular, the densities reached in the spiral arms) could potentially result in differences in the locations and time-scales for gravitational collapse, and therefore impact star formation activity in more complex galaxy disc simulations.

  19. Hydrodynamics of micropipette aspiration.

    PubMed Central

    Drury, J L; Dembo, M

    1999-01-01

    The dynamics of human neutrophils during micropipette aspiration are frequently analyzed by approximating these cells as simple slippery droplets of viscous fluid. Here, we present computations that reveal the detailed predictions of the simplest and most idealized case of such a scheme; namely, the case where the fluid of the droplet is homogeneous and Newtonian, and the surface tension of the droplet is constant. We have investigated the behavior of this model as a function of surface tension, droplet radius, viscosity, aspiration pressure, and pipette radius. In addition, we have tabulated a dimensionless factor, M, which can be utilized to calculate the apparent viscosity of the slippery droplet. Computations were carried out using a low Reynolds number hydrodynamics transport code based on the finite-element method. Although idealized and simplistic, we find that the slippery droplet model predicts many observed features of neutrophil aspiration. However, there are certain features that are not observed in neutrophils. In particular, the model predicts dilation of the membrane past the point of being continuous, as well as a reentrant jet at high aspiration pressures. PMID:9876128

  20. Disruptive Innovation in Numerical Hydrodynamics

    SciTech Connect

    Waltz, Jacob I.

    2012-09-06

    We propose the research and development of a high-fidelity hydrodynamic algorithm for tetrahedral meshes that will lead to a disruptive innovation in the numerical modeling of Laboratory problems. Our proposed innovation has the potential to reduce turnaround time by orders of magnitude relative to Advanced Simulation and Computing (ASC) codes; reduce simulation setup costs by millions of dollars per year; and effectively leverage Graphics Processing Unit (GPU) and future Exascale computing hardware. If successful, this work will lead to a dramatic leap forward in the Laboratory's quest for a predictive simulation capability.

  1. A base-line model for direct-drive ICF implosions in the xRAGE code

    NASA Astrophysics Data System (ADS)

    Dodd, E. S.; Schmidt, J. H.; Cooley, J. H.

    2013-10-01

    xRAGE is a radiation-hydrodynamics code using a Godunov solver on an Eulerian mesh with an adaptive mesh refinement (AMR) algorithm, and a radiation diffusion algorithm. It has been used to study fluid flow in highly distorted systems, where arbitrary Langrian Eulerian (ALE) methods are not the method of choice, which can include ICF. A version of the code, called CASSIO, uses an implicit Monte Carlo (IMC) method for radiation transport. However, specific physics packages relevant to ICF have not been available in the past, and which include laser propagation, three-temperature plasma physics and non-LTE opacity calculations. As these physics packages become available and undergo testing, a suite of validation problems is being developed to test the code under conditions relevant to ICF. The direct-drive ICF capsules fielded for the High-Z project will be used as the initial suite of validation problems. This presentation will discuss the capsule experiments and the physics used in the modeling, as well as a brief overview of the software framework used to standardize the verification and validation process. Supported under the U. S. Department of Energy by the Los Alamos National Security, LLC under contract DE-AC52-06NA25396. LA-UR-13-25068.

  2. Field temperature measurements at Erta'Ale Lava Lake, Ethiopia

    NASA Astrophysics Data System (ADS)

    Burgi, Pierre-Yves; Caillet, Marc; Haefeli, Steven

    2002-06-01

    The shield volcano Erta'Ale, situated in the Danakil Depression, Ethiopia, is known for its active lava lake. In February 2001, our team visited this lake, located inside an 80-m-deep pit, to perform field temperature measurements. The distribution and variation of temperature inside the lake were obtained on the basis of infrared radiation measurements performed from the rim of the pit and from the lake shores. The crust temperature was also determined from the lake shores with a thermocouple to calibrate the pyrometer. We estimated an emissivity of the basalt of 0.74 from this experiment. Through the application of the Stefan-Boltzmann law, we then obtained an estimate of the total radiative heat flux, constrained by pyrometer measurements of the pit, and visual observations of the lake activity. Taking into account the atmospheric convective heat flux, the convected magma mass flux needed to balance the energy budget was subsequently derived and found to represent between 510 and 580 kg s-1. The surface circulation of this mass flux was also analyzed through motion processing techniques applied to video images of the lake. Electronic supplementary material to this paper can be obtained by using the Springer LINK server located at http://dx.doi.org/10.1007/s00445-002-0224-3.

  3. ICEd-ALE Treatment of 3-D Fluid Flow.

    1999-09-13

    Version: 00 SALE3D calculates three-dimensional fluid flow at all speeds, from the incompressible limit to highly supersonic. An implicit treatment of the pressure calculation similar to that in the Implicit Continuous-fluid Eulerian (ICE) technique provides this flow speed flexibility. In addition, the computing mesh may move with the fluid in a typical Lagrangian fashion, be held in an Eulerian manner, or move in some arbitrarily specified way to provide a continuous rezoning capability. This latitudemore » results from use of an Arbitrary Lagrangian-Eulerian (ALE) treatment of the mesh. The partial differential equations solved are the Navier-Stokes equations and the mass and internal energy equations. The fluid pressure is determined from an equation of state and supplemented with an artificial viscous pressure for the computation of shock waves. The computing mesh consists of a three-dimensional network of arbitrarily shaped, six-sided deformable cells, and a variety of user-selectable boundary conditions are provided in the program.« less

  4. Smoothed Particle Hydrodynamics for water wave propagation in a channel

    NASA Astrophysics Data System (ADS)

    Omidvar, Pourya; Norouzi, Hossein; Zarghami, Ahad

    2015-01-01

    In this paper, Smoothed Particle Hydrodynamics (SPH) is used to simulate the propagation of waves in an intermediate depth water channel. The major advantage of using SPH is that no special treatment of the free surface is required, which is advantageous for simulating highly nonlinear flows with possible wave breaking. The SPH method has an option of different formulations with their own advantages and drawbacks to be implemented. Here, we apply the classical and Arbitrary Lagrange-Euler (ALE) formulation for wave propagation in a water channel. The classical SPH should come with an artificial viscosity which stabilizes the numerical algorithm and increases the accuracy. Here, we will show that the use of classical SPH with an artificial viscosity may cause the waves in the channel to decay. On the other hand, we will show that using the ALE-SPH algorithm with a Riemann solver is more stable, and in addition to producing the pressure fields with much less numerical noise, the waves propagate in the channel without dissipation.

  5. Hydrodynamic simulations with the Godunov smoothed particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Murante, G.; Borgani, S.; Brunino, R.; Cha, S.-H.

    2011-10-01

    We present results based on an implementation of the Godunov smoothed particle hydrodynamics (GSPH), originally developed by Inutsuka, in the GADGET-3 hydrodynamic code. We first review the derivation of the GSPH discretization of the equations of moment and energy conservation, starting from the convolution of these equations with the interpolating kernel. The two most important aspects of the numerical implementation of these equations are (a) the appearance of fluid velocity and pressure obtained from the solution of the Riemann problem between each pair of particles, and (b) the absence of an artificial viscosity term. We carry out three different controlled hydrodynamical three-dimensional tests, namely the Sod shock tube, the development of Kelvin-Helmholtz instabilities in a shear-flow test and the 'blob' test describing the evolution of a cold cloud moving against a hot wind. The results of our tests confirm and extend in a number of aspects those recently obtained by Cha, Inutsuka & Nayakshin: (i) GSPH provides a much improved description of contact discontinuities, with respect to smoothed particle hydrodynamics (SPH), thus avoiding the appearance of spurious pressure forces; (ii) GSPH is able to follow the development of gas-dynamical instabilities, such as the Kevin-Helmholtz and the Rayleigh-Taylor ones; (iii) as a result, GSPH describes the development of curl structures in the shear-flow test and the dissolution of the cold cloud in the 'blob' test. Besides comparing the results of GSPH with those from standard SPH implementations, we also discuss in detail the effect on the performances of GSPH of changing different aspects of its implementation: choice of the number of neighbours, accuracy of the interpolation procedure to locate the interface between two fluid elements (particles) for the solution of the Riemann problem, order of the reconstruction for the assignment of variables at the interface, choice of the limiter to prevent oscillations of

  6. A point-centered arbitrary Lagrangian Eulerian hydrodynamic approach for tetrahedral meshes

    DOE PAGESBeta

    Morgan, Nathaniel R.; Waltz, Jacob I.; Burton, Donald E.; Charest, Marc R.; Canfield, Thomas R.; Wohlbier, John G.

    2015-02-24

    We present a three dimensional (3D) arbitrary Lagrangian Eulerian (ALE) hydrodynamic scheme suitable for modeling complex compressible flows on tetrahedral meshes. The new approach stores the conserved variables (mass, momentum, and total energy) at the nodes of the mesh and solves the conservation equations on a control volume surrounding the point. This type of an approach is termed a point-centered hydrodynamic (PCH) method. The conservation equations are discretized using an edge-based finite element (FE) approach with linear basis functions. All fluxes in the new approach are calculated at the center of each tetrahedron. A multidirectional Riemann-like problem is solved atmore » the center of the tetrahedron. The advective fluxes are calculated by solving a 1D Riemann problem on each face of the nodal control volume. A 2-stage Runge–Kutta method is used to evolve the solution forward in time, where the advective fluxes are part of the temporal integration. The mesh velocity is smoothed by solving a Laplacian equation. The details of the new ALE hydrodynamic scheme are discussed. Results from a range of numerical test problems are presented.« less

  7. A point-centered arbitrary Lagrangian Eulerian hydrodynamic approach for tetrahedral meshes

    SciTech Connect

    Morgan, Nathaniel R.; Waltz, Jacob I.; Burton, Donald E.; Charest, Marc R.; Canfield, Thomas R.; Wohlbier, John G.

    2015-02-24

    We present a three dimensional (3D) arbitrary Lagrangian Eulerian (ALE) hydrodynamic scheme suitable for modeling complex compressible flows on tetrahedral meshes. The new approach stores the conserved variables (mass, momentum, and total energy) at the nodes of the mesh and solves the conservation equations on a control volume surrounding the point. This type of an approach is termed a point-centered hydrodynamic (PCH) method. The conservation equations are discretized using an edge-based finite element (FE) approach with linear basis functions. All fluxes in the new approach are calculated at the center of each tetrahedron. A multidirectional Riemann-like problem is solved at the center of the tetrahedron. The advective fluxes are calculated by solving a 1D Riemann problem on each face of the nodal control volume. A 2-stage Runge–Kutta method is used to evolve the solution forward in time, where the advective fluxes are part of the temporal integration. The mesh velocity is smoothed by solving a Laplacian equation. The details of the new ALE hydrodynamic scheme are discussed. Results from a range of numerical test problems are presented.

  8. Supernova-relevant hydrodynamic instability experiment on the Nova laser

    SciTech Connect

    Kane, J.; Arnett, D.; Remington, B.A.; Glendinning, S.G.; Castor, J.; Rubenchik, A.; Berning, M.

    1996-02-12

    Supernova 1987A focused attention on the critical role of hydrodynamic instabilities in the evolution of supernovae. On quite a separate front, the detrimental effect of hydrodynamic instabilities in inertial confinement fusion (ICF) has long been known. Tools from both areas are being tested on a common project. At Lawrence Livermore National Laboratory (LLNL), the Nova Laser is being used in scaled laboratory experiments of hydrodynamic mixing under supernova-relevant conditions. Numerical simulations of the experiments are being done, using hydrodynamics codes at the Laboratory, and astrophysical codes successfully used to model the hydrodynamics of supernovae. A two-layer package composed of Cu and CH{sub 2} with a single mode sinusoidal 1D perturbation at the interface, shocked by indirect laser drive from the Cu side of the package, produced significant Rayleigh-Taylor (RT) growth in the nonlinear regime. The scale and gross structure of the growth was successfully modeled, by mapping an early-time simulation done with 1D HYADES, a radiation transport code, into 2D CALE, a LLNL hydrodynamics code. The HYADES result was also mapped in 2D into the supernova code PROMETHEUS, which was also able to reproduce the scale and gross structure of the growth.

  9. Identification of variable convective regimes at Erta Ale Lava Lake

    NASA Astrophysics Data System (ADS)

    Harris, Andrew J. L.; Carniel, Roberto; Jones, Josh

    2005-04-01

    During February 17-19, 2002, we collected a combined thermal and seismic data set for persistent lava lake activity at Erta Ale volcano, Ethiopia. These data indicate that the lake cycled between periods characterized by low (0.01-0.08 m s -1) and high (0.1-0.4 m s -1) surface velocities, typically lasting tens to hundreds of minutes. These periods of high and low velocity motion define periods of vigorous and sluggish convection, respectively. Spectral analysis revealed that vigorous convection periods were characterized by high frequencies and energies in the thermal data and an increased presence of high-frequency energy in the seismic data. The data show that vigorous periods were characterized by formation of hot, short-lived, plastic crusts, and sluggish periods by cooler, longer lived, brittle crusts. Here, the higher transit velocity across the lake surface from upwelling zones of crust formation to downwelling zones of crust destruction during the vigorous periods decreases the crust lifetime. This in turn decreases the total cooling and thickening experienced by a plate of crust moving across the lake surface. Two scenarios can be envisaged to explain such convection cycles. The first relates variable convection rates to changes in the volume flux and rheology of magma entering the lake. In the second, cyclic convection is set up by the generation of convective instabilities within the lake. In this case, cooling of a surface layer generates a slow moving, viscous, increasingly dense convection layer at the lake surface which is consumed and replaced during overturn.

  10. Two-dimensional protein map of an "ale"-brewing yeast strain: proteome dynamics during fermentation.

    PubMed

    Kobi, Dominique; Zugmeyer, Sandra; Potier, Serge; Jaquet-Gutfreund, Laurence

    2004-12-01

    The first protein map of an ale-fermenting yeast is presented in this paper: 205 spots corresponding to 133 different proteins were identified. Comparison of the proteome of this ale strain with a lager brewing yeast and the Saccharomyces cerevisiae strain S288c confirmed that this ale strain is much closer to S288c than the lager strain at the proteome level. The dynamics of the ale-brewing yeast proteome during production-scale fermentation was analysed at the beginning and end of the first and the third usage of the yeast (called generation in the brewing industry). During the first generation, most changes were related to the switch from aerobic propagation to anaerobic fermentation. Fewer changes were observed during the third generation but certain stress-response proteins such as Hsp26p, Ssa4p and Pnc1p exhibited constitutive expression in subsequent generations. The ale brewing yeast strain appears to be quite well adapted to fermentation conditions and stresses. PMID:15556083

  11. Calculation of Chemical Detonation Waves With Hydrodynamics and Thermochemical Equation of State

    SciTech Connect

    Howard, W M; Fried, L E; Souers, P C; Vitello, P A

    2001-08-01

    We model detonation waves for solid explosives, using 2-D Arbitrary Lagrange Eulerian (ALE) hydrodynamics, with an equation of state (EOS) based on thermochemical equilibrium, coupled with simple kinetic rate laws for a few reactants. The EOS for the product species is based on either a BKWC EOS or on an exponential-6 potential model, whose parameters are fitted to a wide range of shock Hugoniot and static compression data. We show some results for the non ideal explosive, urea nitrate. Such a model is a powerful tool for studying such processes as initiation, detonation wave propagation and detonation wave propagation as a function of cylindrical radius.

  12. Hydrodynamic effects in proteins

    NASA Astrophysics Data System (ADS)

    Szymczak, Piotr; Cieplak, Marek

    2011-01-01

    Experimental and numerical results pertaining to flow-induced effects in proteins are reviewed. Special emphasis is placed on shear-induced unfolding and on the role of solvent mediated hydrodynamic interactions in the conformational transitions in proteins.

  13. Hydrodynamic effects in proteins.

    PubMed

    Szymczak, Piotr; Cieplak, Marek

    2011-01-26

    Experimental and numerical results pertaining to flow-induced effects in proteins are reviewed. Special emphasis is placed on shear-induced unfolding and on the role of solvent mediated hydrodynamic interactions in the conformational transitions in proteins. PMID:21406855

  14. Multifunctional diamine AGE/ALE inhibitors with potential therapeutical properties against Alzheimer's disease.

    PubMed

    Lohou, Elodie; Sasaki, N André; Boullier, Agnès; Sonnet, Pascal

    2016-10-21

    An important part of pathogenesis of Alzheimer's disease (AD) is attributed to the contribution of AGE (Advanced Glycation Endproducts) and ALE (Advanced Lipid peroxidation Endproducts). In order to attenuate the progression of AD, we designed a new type of molecules that consist of two trapping parts for reactive carbonyl species (RCS) and reactive oxygen species (ROS), precursors of AGE and ALE, respectively. These molecules also chelate transition metals, the promoters of ROS formation. In this paper, synthesis of the new AGE/ALE inhibitors and evaluation of their physicochemical and biological properties (carbonyl trapping capacity, antioxidant activity, Cu(2+)-chelating capacity, cytotoxicity and protective effect against in vitro MGO-induced apoptosis in the model AD cell-line PC12) are described. It is found that compounds 40b and 51e possess promising therapeutic potentials for treating AD. PMID:27451257

  15. Decomposition, location, and persistence of seismic signals recovered from continuous tremor at Erta 'Ale, Ethiopia

    NASA Astrophysics Data System (ADS)

    Jones, J. P.; Carniel, R.; Malone, S. D.

    2012-02-01

    Subband decomposition and reconstruction (SDR) provides a quantitative, semi-automated, rapid means of analyzing volcanic tremor, which can recover signals that dominate different parts of the frequency spectrum while preserving polarization and phase. Here, applied to data from a two week experiment at Erta 'Ale in Nov-Dec 2003, we demonstrate that the SDR method can identify signals corresponding to source processes active in several different physical regions of the Erta 'Ale caldera. Different recovered signals suggest that the continuous tremor at Erta 'Ale is a composite of several seismic sources, including conduit resonance, bubble bursting phenomena, and degassing at fumaroles. These signals are seen throughout the 2003 experiment, suggesting that several competing source models of volcanic tremor can produce signals at the same volcanic conduit system simultaneously.

  16. Testing hydrodynamics schemes in galaxy disc simulations

    NASA Astrophysics Data System (ADS)

    Few, C. G.; Dobbs, C.; Pettitt, A.; Konstandin, L.

    2016-08-01

    We examine how three fundamentally different numerical hydrodynamics codes follow the evolution of an isothermal galactic disc with an external spiral potential. We compare an adaptive mesh refinement code (RAMSES), a smoothed particle hydrodynamics code (sphNG), and a volume-discretised meshless code (GIZMO). Using standard refinement criteria, we find that RAMSES produces a disc that is less vertically concentrated and does not reach such high densities as the sphNG or GIZMO runs. The gas surface density in the spiral arms increases at a lower rate for the RAMSES simulations compared to the other codes. There is also a greater degree of substructure in the sphNG and GIZMO runs and secondary spiral arms are more pronounced. By resolving the Jeans' length with a greater number of grid cells we achieve more similar results to the Lagrangian codes used in this study. Other alterations to the refinement scheme (adding extra levels of refinement and refining based on local density gradients) are less successful in reducing the disparity between RAMSES and sphNG/GIZMO. Although more similar, sphNG displays different density distributions and vertical mass profiles to all modes of GIZMO (including the smoothed particle hydrodynamics version). This suggests differences also arise which are not intrinsic to the particular method but rather due to its implementation. The discrepancies between codes (in particular, the densities reached in the spiral arms) could potentially result in differences in the locations and timescales for gravitational collapse, and therefore impact star formation activity in more complex galaxy disc simulations.

  17. Investigating flavour characteristics of British ale yeasts: techniques, resources and opportunities for innovation

    PubMed Central

    Parker, Neva; James, Steve; Dicks, Jo; Bond, Chris; Nueno-Palop, Carmen; White, Chris; Roberts, Ian N

    2015-01-01

    Five British ale yeast strains were subjected to flavour profiling under brewery fermentation conditions in which all other brewing parameters were kept constant. Significant variation was observed in the timing and quantity of flavour-related chemicals produced. Genetic tests showed no evidence of hybrid origins in any of the strains, including one strain previously reported as a possible hybrid of Saccharomyces cerevisiae and S. bayanus. Variation maintained in historical S. cerevisiae ale yeast collections is highlighted as a potential source of novelty in innovative strain improvement for bioflavour production. Copyright © 2014 John Wiley & Sons, Ltd. PMID:25361168

  18. Investigating flavour characteristics of British ale yeasts: techniques, resources and opportunities for innovation.

    PubMed

    Parker, Neva; James, Steve; Dicks, Jo; Bond, Chris; Nueno-Palop, Carmen; White, Chris; Roberts, Ian N

    2015-01-01

    Five British ale yeast strains were subjected to flavour profiling under brewery fermentation conditions in which all other brewing parameters were kept constant. Significant variation was observed in the timing and quantity of flavour-related chemicals produced. Genetic tests showed no evidence of hybrid origins in any of the strains, including one strain previously reported as a possible hybrid of Saccharomyces cerevisiae and S. bayanus. Variation maintained in historical S. cerevisiae ale yeast collections is highlighted as a potential source of novelty in innovative strain improvement for bioflavour production. PMID:25361168

  19. First light with ALES: A 2-5 micron adaptive optics Integral Field Spectrograph for the LBT

    NASA Astrophysics Data System (ADS)

    Skemer, Andrew J.; Hinz, Philip; Montoya, Manny; Skrutskie, Michael F.; Leisenring, Jarron; Durney, Oli; Woodward, Charles E.; Wilson, John; Nelson, Matt; Bailey, Vanessa; Defrere, Denis; Stone, Jordan

    2015-09-01

    Integral field spectrographs are an important technology for exoplanet imaging, due to their ability to take spectra in a high-contrast environment, and improve planet detection sensitivity through spectral differential imaging. ALES is the first integral field spectrograph capable of imaging exoplanets from 3-5 μm, and will extend our ability to characterize self-luminous exoplanets into a wavelength range where they peak in brightness. ALES is installed inside LBTI/LMIRcam on the Large Binocular Telescope, taking advantage of existing AO systems, camera optics, and a HAWAII-2RG detector. The new optics that comprise ALES are a Keplerian magnifier, a silicon lenslet array with diffraction suppressing pinholes, a direct vision prism, and calibration optics. All of these components are installed in filter wheels making ALES a completely modular design. ALES saw first light at the LBT in June 2015.

  20. Hydrodynamic simulations of recurrent novae

    NASA Astrophysics Data System (ADS)

    Starrfield, S.; Sparks, W. M.; Truran, J. W.; Sion, E. M.

    1984-12-01

    Simulations of the 1979 outburst of the recurrent nova U Scorpii using a Lagrangian, hydrodynamic computer code which incorporates accretion in the evolution to the outburst are discussed. Three evolutionary sequences were computed in an attempt to understand the very rapid outburst and short recurrence time of this most unusual nova. It is now possible to reproduce the CNO composition of the ejected material, the light curve, the amount of ejected material, and the kinetic energy of the ejecta. The best sequence studied involved accretion of solar rich material onto a 1.38 solar magnatude white dwarf at a rate of 1.6 x 10 to the minus 8 solar magnatude per year.

  1. Environmental Fluid Dynamics Code

    EPA Science Inventory

    The Environmental Fluid Dynamics Code (EFDC)is a state-of-the-art hydrodynamic model that can be used to simulate aquatic systems in one, two, and three dimensions. It has evolved over the past two decades to become one of the most widely used and technically defensible hydrodyn...

  2. Progress in smooth particle hydrodynamics

    SciTech Connect

    Wingate, C.A.; Dilts, G.A.; Mandell, D.A.; Crotzer, L.A.; Knapp, C.E.

    1998-07-01

    Smooth Particle Hydrodynamics (SPH) is a meshless, Lagrangian numerical method for hydrodynamics calculations where calculational elements are fuzzy particles which move according to the hydrodynamic equations of motion. Each particle carries local values of density, temperature, pressure and other hydrodynamic parameters. A major advantage of SPH is that it is meshless, thus large deformation calculations can be easily done with no connectivity complications. Interface positions are known and there are no problems with advecting quantities through a mesh that typical Eulerian codes have. These underlying SPH features make fracture physics easy and natural and in fact, much of the applications work revolves around simulating fracture. Debris particles from impacts can be easily transported across large voids with SPH. While SPH has considerable promise, there are some problems inherent in the technique that have so far limited its usefulness. The most serious problem is the well known instability in tension leading to particle clumping and numerical fracture. Another problem is that the SPH interpolation is only correct when particles are uniformly spaced a half particle apart leading to incorrect strain rates, accelerations and other quantities for general particle distributions. SPH calculations are also sensitive to particle locations. The standard artificial viscosity treatment in SPH leads to spurious viscosity in shear flows. This paper will demonstrate solutions for these problems that they and others have been developing. The most promising is to replace the SPH interpolant with the moving least squares (MLS) interpolant invented by Lancaster and Salkauskas in 1981. SPH and MLS are closely related with MLS being essentially SPH with corrected particle volumes. When formulated correctly, JLS is conservative, stable in both compression and tension, does not have the SPH boundary problems and is not sensitive to particle placement. The other approach to

  3. Resurgence in extended hydrodynamics

    NASA Astrophysics Data System (ADS)

    Aniceto, Inês; Spaliński, Michał

    2016-04-01

    It has recently been understood that the hydrodynamic series generated by the Müller-Israel-Stewart theory is divergent and that this large-order behavior is consistent with the theory of resurgence. Furthermore, it was observed that the physical origin of this is the presence of a purely damped nonhydrodynamic mode. It is very interesting to ask whether this picture persists in cases where the spectrum of nonhydrodynamic modes is richer. We take the first step in this direction by considering the simplest hydrodynamic theory which, instead of the purely damped mode, contains a pair of nonhydrodynamic modes of complex conjugate frequencies. This mimics the pattern of black brane quasinormal modes which appear on the gravity side of the AdS/CFT description of N =4 supersymmetric Yang-Mills plasma. We find that the resulting hydrodynamic series is divergent in a way consistent with resurgence and precisely encodes information about the nonhydrodynamic modes of the theory.

  4. Scaling supernova hydrodynamics to the laboratory

    SciTech Connect

    Kane, J.O.

    1999-06-01

    Supernova (SN) 1987A focused attention on the critical role of hydrodynamic instabilities in the evolution of supernovae. To test the modeling of these instabilities, we are developing laboratory experiments of hydrodynamic mixing under conditions relevant to supernovae. Initial results were reported in J. Kane et al., Astrophys. J.478, L75 (1997) The Nova laser is used to shock two-layer targets, producing Richtmyer-Meshkov (RM) and Rayleigh-Taylor (RT) instabilities at the interfaces between the layers, analogous to instabilities seen at the interfaces of SN 1987A. Because the hydrodynamics in the laser experiments at intermediate times (3-40 ns) and in SN 1987A at intermediate times (5 s-10{sup 4} s) are well described by the Euler equations, the hydrodynamics scale between the two regimes. The experiments are modeled using the hydrodynamics codes HYADES and CALE, and the supernova code PROMETHEUS, thus serving as a benchmark for PROMETHEUS. Results of the experiments and simulations are presented. Analysis of the spike and bubble velocities in the experiment using potential flow theory and a modified Ott thin shell theory is presented. A numerical study of 2D vs. 3D differences in instability growth at the O-He and He-H interface of SN 1987A, and the design for analogous laser experiments are presented. We discuss further work to incorporate more features of the SN in the experiments, including spherical geometry, multiple layers and density gradients. Past and ongoing work in laboratory and laser astrophysics is reviewed, including experimental work on supernova remnants (SNRs). A numerical study of RM instability in SNRs is presented.

  5. Synchronization via Hydrodynamic Interactions

    NASA Astrophysics Data System (ADS)

    Kendelbacher, Franziska; Stark, Holger

    2013-12-01

    An object moving in a viscous fluid creates a flow field that influences the motion of neighboring objects. We review examples from nature in the microscopic world where such hydrodynamic interactions synchronize beating or rotating filaments. Bacteria propel themselves using a bundle of rotating helical filaments called flagella which have to be synchronized in phase. Other micro-organisms are covered with a carpet of smaller filaments called cilia on their surfaces. They beat highly synchronized so that metachronal waves propagate along the cell surfaces. We explore both examples with the help of simple model systems and identify generic properties for observing synchronization by hydrodynamic interactions.

  6. Skew resisting hydrodynamic seal

    DOEpatents

    Conroy, William T.; Dietle, Lannie L.; Gobeli, Jeffrey D.; Kalsi, Manmohan S.

    2001-01-01

    A novel hydrodynamically lubricated compression type rotary seal that is suitable for lubricant retention and environmental exclusion. Particularly, the seal geometry ensures constraint of a hydrodynamic seal in a manner preventing skew-induced wear and provides adequate room within the seal gland to accommodate thermal expansion. The seal accommodates large as-manufactured variations in the coefficient of thermal expansion of the sealing material, provides a relatively stiff integral spring effect to minimize pressure-induced shuttling of the seal within the gland, and also maintains interfacial contact pressure within the dynamic sealing interface in an optimum range for efficient hydrodynamic lubrication and environment exclusion. The seal geometry also provides for complete support about the circumference of the seal to receive environmental pressure, as compared the interrupted character of seal support set forth in U.S. Pat. Nos. 5,873,576 and 6,036,192 and provides a hydrodynamic seal which is suitable for use with non-Newtonian lubricants.

  7. Simple Waves in Ideal Radiation Hydrodynamics

    SciTech Connect

    Johnson, B M

    2008-09-03

    In the dynamic diffusion limit of radiation hydrodynamics, advection dominates diffusion; the latter primarily affects small scales and has negligible impact on the large scale flow. The radiation can thus be accurately regarded as an ideal fluid, i.e., radiative diffusion can be neglected along with other forms of dissipation. This viewpoint is applied here to an analysis of simple waves in an ideal radiating fluid. It is shown that much of the hydrodynamic analysis carries over by simply replacing the material sound speed, pressure and index with the values appropriate for a radiating fluid. A complete analysis is performed for a centered rarefaction wave, and expressions are provided for the Riemann invariants and characteristic curves of the one-dimensional system of equations. The analytical solution is checked for consistency against a finite difference numerical integration, and the validity of neglecting the diffusion operator is demonstrated. An interesting physical result is that for a material component with a large number of internal degrees of freedom and an internal energy greater than that of the radiation, the sound speed increases as the fluid is rarefied. These solutions are an excellent test for radiation hydrodynamic codes operating in the dynamic diffusion regime. The general approach may be useful in the development of Godunov numerical schemes for radiation hydrodynamics.

  8. SPHGR: Smoothed-Particle Hydrodynamics Galaxy Reduction

    NASA Astrophysics Data System (ADS)

    Thompson, Robert

    2015-02-01

    SPHGR (Smoothed-Particle Hydrodynamics Galaxy Reduction) is a python based open-source framework for analyzing smoothed-particle hydrodynamic simulations. Its basic form can run a baryonic group finder to identify galaxies and a halo finder to identify dark matter halos; it can also assign said galaxies to their respective halos, calculate halo & galaxy global properties, and iterate through previous time steps to identify the most-massive progenitors of each halo and galaxy. Data about each individual halo and galaxy is collated and easy to access. SPHGR supports a wide range of simulations types including N-body, full cosmological volumes, and zoom-in runs. Support for multiple SPH code outputs is provided by pyGadgetReader (ascl:1411.001), mainly Gadget (ascl:0003.001) and TIPSY (ascl:1111.015).

  9. Hydrodynamic shock wave studies within a kinetic Monte Carlo approach

    NASA Astrophysics Data System (ADS)

    Sagert, Irina; Bauer, Wolfgang; Colbry, Dirk; Howell, Jim; Pickett, Rodney; Staber, Alec; Strother, Terrance

    2014-06-01

    We introduce a massively parallelized test-particle based kinetic Monte Carlo code that is capable of modeling the phase space evolution of an arbitrarily sized system that is free to move in and out of the continuum limit. Our code combines advantages of the DSMC and the Point of Closest Approach techniques for solving the collision integral. With that, it achieves high spatial accuracy in simulations of large particle systems while maintaining computational feasibility. Using particle mean free paths which are small with respect to the characteristic length scale of the simulated system, we reproduce hydrodynamic behavior. To demonstrate that our code can retrieve continuum solutions, we perform a test-suite of classic hydrodynamic shock problems consisting of the Sod, the Noh, and the Sedov tests. We find that the results of our simulations which apply millions of test-particles match the analytic solutions well. In addition, we take advantage of the ability of kinetic codes to describe matter out of the continuum regime when applying large particle mean free paths. With that, we study and compare the evolution of shock waves in the hydrodynamic limit and in a regime which is not reachable by hydrodynamic codes.

  10. Computational brittle fracture using smooth particle hydrodynamics

    SciTech Connect

    Mandell, D.A.; Wingate, C.A.; Schwalbe, L.A.

    1996-10-01

    We are developing statistically based, brittle-fracture models and are implementing them into hydrocodes that can be used for designing systems with components of ceramics, glass, and/or other brittle materials. Because of the advantages it has simulating fracture, we are working primarily with the smooth particle hydrodynamics code SPBM. We describe a new brittle fracture model that we have implemented into SPBM. To illustrate the code`s current capability, we have simulated a number of experiments. We discuss three of these simulations in this paper. The first experiment consists of a brittle steel sphere impacting a plate. The experimental sphere fragment patterns are compared to the calculations. The second experiment is a steel flyer plate in which the recovered steel target crack patterns are compared to the calculated crack patterns. We also briefly describe a simulation of a tungsten rod impacting a heavily confined alumina target, which has been recently reported on in detail.

  11. Hydrodynamics of Turning Flocks.

    PubMed

    Yang, Xingbo; Marchetti, M Cristina

    2015-12-18

    We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well-polarized flocks. The continuum equations controlled by only two dimensionless parameters, orientational inertia and alignment strength, are derived by coarse-graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields anisotropic spin waves that mediate the propagation of turning information throughout the flock. The coupling between spin-current density to the local vorticity field through a nonlinear friction gives rise to a hydrodynamic mode with angular-dependent propagation speed at long wavelengths. This mode becomes unstable as a result of the growth of bend and splay deformations augmented by the spin wave, signaling the transition to complex spatiotemporal patterns of continuously turning and swirling flocks. PMID:26722945

  12. Hydrodynamics of Turning Flocks

    NASA Astrophysics Data System (ADS)

    Yang, Xingbo; Marchetti, M. Cristina

    2015-12-01

    We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well-polarized flocks. The continuum equations controlled by only two dimensionless parameters, orientational inertia and alignment strength, are derived by coarse-graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields anisotropic spin waves that mediate the propagation of turning information throughout the flock. The coupling between spin-current density to the local vorticity field through a nonlinear friction gives rise to a hydrodynamic mode with angular-dependent propagation speed at long wavelengths. This mode becomes unstable as a result of the growth of bend and splay deformations augmented by the spin wave, signaling the transition to complex spatiotemporal patterns of continuously turning and swirling flocks.

  13. Fluctuations in relativistic causal hydrodynamics

    NASA Astrophysics Data System (ADS)

    Kumar, Avdhesh; Bhatt, Jitesh R.; Mishra, Ananta P.

    2014-05-01

    Formalism to calculate the hydrodynamic fluctuations by applying the Onsager theory to the relativistic Navier-Stokes equation is already known. In this work, we calculate hydrodynamic fluctuations within the framework of the second order hydrodynamics of Müller, Israel and Stewart and its generalization to the third order. We have also calculated the fluctuations for several other causal hydrodynamical equations. We show that the form for the Onsager-coefficients and form of the correlation functions remain the same as those obtained by the relativistic Navier-Stokes equation and do not depend on any specific model of hydrodynamics. Further we numerically investigate evolution of the correlation function using the one dimensional boost-invariant (Bjorken) flow. We compare the correlation functions obtained using the causal hydrodynamics with the correlation function for the relativistic Navier-Stokes equation. We find that the qualitative behavior of the correlation functions remains the same for all the models of the causal hydrodynamics.

  14. Hydrodynamics of insect spermatozoa

    NASA Astrophysics Data System (ADS)

    Pak, On Shun; Lauga, Eric

    2010-11-01

    Microorganism motility plays important roles in many biological processes including reproduction. Many microorganisms propel themselves by propagating traveling waves along their flagella. Depending on the species, propagation of planar waves (e.g. Ceratium) and helical waves (e.g. Trichomonas) were observed in eukaryotic flagellar motion, and hydrodynamic models for both were proposed in the past. However, the motility of insect spermatozoa remains largely unexplored. An interesting morphological feature of such cells, first observed in Tenebrio molitor and Bacillus rossius, is the double helical deformation pattern along the flagella, which is characterized by the presence of two superimposed helical flagellar waves (one with a large amplitude and low frequency, and the other with a small amplitude and high frequency). Here we present the first hydrodynamic investigation of the locomotion of insect spermatozoa. The swimming kinematics, trajectories and hydrodynamic efficiency of the swimmer are computed based on the prescribed double helical deformation pattern. We then compare our theoretical predictions with experimental measurements, and explore the dependence of the swimming performance on the geometric and dynamical parameters.

  15. Hydrodynamics of fossil fishes.

    PubMed

    Fletcher, Thomas; Altringham, John; Peakall, Jeffrey; Wignall, Paul; Dorrell, Robert

    2014-08-01

    From their earliest origins, fishes have developed a suite of adaptations for locomotion in water, which determine performance and ultimately fitness. Even without data from behaviour, soft tissue and extant relatives, it is possible to infer a wealth of palaeobiological and palaeoecological information. As in extant species, aspects of gross morphology such as streamlining, fin position and tail type are optimized even in the earliest fishes, indicating similar life strategies have been present throughout their evolutionary history. As hydrodynamical studies become more sophisticated, increasingly complex fluid movement can be modelled, including vortex formation and boundary layer control. Drag-reducing riblets ornamenting the scales of fast-moving sharks have been subjected to particularly intense research, but this has not been extended to extinct forms. Riblets are a convergent adaptation seen in many Palaeozoic fishes, and probably served a similar hydrodynamic purpose. Conversely, structures which appear to increase skin friction may act as turbulisors, reducing overall drag while serving a protective function. Here, we examine the diverse adaptions that contribute to drag reduction in modern fishes and review the few attempts to elucidate the hydrodynamics of extinct forms. PMID:24943377

  16. Hydrodynamics of fossil fishes

    PubMed Central

    Fletcher, Thomas; Altringham, John; Peakall, Jeffrey; Wignall, Paul; Dorrell, Robert

    2014-01-01

    From their earliest origins, fishes have developed a suite of adaptations for locomotion in water, which determine performance and ultimately fitness. Even without data from behaviour, soft tissue and extant relatives, it is possible to infer a wealth of palaeobiological and palaeoecological information. As in extant species, aspects of gross morphology such as streamlining, fin position and tail type are optimized even in the earliest fishes, indicating similar life strategies have been present throughout their evolutionary history. As hydrodynamical studies become more sophisticated, increasingly complex fluid movement can be modelled, including vortex formation and boundary layer control. Drag-reducing riblets ornamenting the scales of fast-moving sharks have been subjected to particularly intense research, but this has not been extended to extinct forms. Riblets are a convergent adaptation seen in many Palaeozoic fishes, and probably served a similar hydrodynamic purpose. Conversely, structures which appear to increase skin friction may act as turbulisors, reducing overall drag while serving a protective function. Here, we examine the diverse adaptions that contribute to drag reduction in modern fishes and review the few attempts to elucidate the hydrodynamics of extinct forms. PMID:24943377

  17. Ground deformation near Gada ‘Ale Volcano, Afar, observed by radar interferometry

    NASA Astrophysics Data System (ADS)

    Amelung, Falk; Oppenheimer, Clive; Segall, P.; Zebker, H.

    2000-10-01

    Radar interferometric measurements of ground-surface displacement using ERS data show a change in radar range, corresponding to up to 12 cm of subsidence near Gada ‘Ale volcano in northern Afar, Ethiopia, that occurred between June 1993 and May 1996. This is the area of lowest topography within the Danakil Depression (-126 m). Geodetic inverse modeling and geological evidence suggest a volcanic origin of the observed deformation; it was probably caused by a combined process of magma withdrawal from a larger reservoir and normal faulting. There is no evidence of subaerial eruption. This is the only identifiable deformation event during June 1993-October 1997 in the 80 km long Erta ‘Ale volcanic range, indicating surprising inactivity elsewhere in the range.

  18. Combining Hydrodynamic and Evolution Calculations of Rotating Stars

    NASA Astrophysics Data System (ADS)

    Deupree, R. G.

    1996-12-01

    Rotation has two primary effects on stellar evolutionary models: the direct influence on the model structure produced by the rotational terms, and the indirect influence produced by rotational instabilities which redistribute angular momentum and composition inside the model. Using a two dimensional, fully implicit finite difference code, I can follow events on both evolutionary and hydrodynamic timescales, thus allowing the simulation of both effects. However, there are several issues concerning how to integrate the results from hydrodynamic runs into evolutionary runs that must be examined. The schemes I have devised for the integration of the hydrodynamic simulations into evolutionary calculations are outlined, and the positive and negative features summarized. The practical differences among the various schemes are small, and a successful marriage between hydrodynamic and evolution calculations is possible.

  19. Coupling GSM/ALE with ES-FEM-T3 for fluid-deformable structure interactions

    NASA Astrophysics Data System (ADS)

    Wang, S.; Khoo, B. C.; Liu, G. R.; Xu, G. X.; Chen, L.

    2014-11-01

    In light of the effectiveness of the edge-based smoothed finite element method (ES-FEM-T3) and arbitrary Lagrangian-Eulerian gradient smoothing method (GSM/ALE) in, respectively, solving the pure solid and fluid flow problems using three-node triangular elements, they are coupled together in the present study to solve the more challenging fluid-deformable structure interaction (FSI) problems based on the weak coupling algorithm. Specifically, the fluid flow is tracked over the moving mesh with the well developed GSM/ALE and the transient response of the solid part is solved by the newly developed explicit ES-FEM-T3. The solutions from these two parts are “linked” together by the carefully formulated FSI coupling conditions on the FSI interface. Detailed procedures are summarized to illustrate the implementations of the GSM/ALE with ES-FEM-T3 in an FSI analysis. Three benchmarks are employed to validate the proposed coupled smoothed method in solving both transient and steady-state FSI problems. The mesh sensitivity analysis is further carried out showing that the results of an FSI system appear more sensitive to the change in the solid mesh as compared to the fluid mesh, thus suggesting a more refined mesh for the solid part. Another significant finding is that the present method can still produce reliable results even on the extremely distorted mesh near the FSI interface. The successful coupling GSM/ALE with ES-FEM-T3 for solving FSI problems serves as a good start for further implementing the family of smoothed methods in solving more complex cross-area problems.

  20. PINTofALE : Package for the interactive analysis of line emission

    NASA Astrophysics Data System (ADS)

    Kashyap, V.; Drake, J. J.

    2000-06-01

    PINTofALE was developed to analyze spectroscopic data from coronal sources in the 1-1500 Å range. It is based on a modular set of IDL tools that interact with an atomic database and with observational data. The tools allow us to easily identify spectral lines, measure fluxes, and carry out more detailed modeling. The package has been extended to handle analysis of high-resolution X-ray spectra that will be obtained with the Chandra X-ray Observatory.

  1. Integrated field, satellite and petrological observations of the November 2010 eruption of Erta Ale

    NASA Astrophysics Data System (ADS)

    Field, Lorraine; Barnie, Talfan; Blundy, Jon; Brooker, Richard A.; Keir, Derek; Lewi, Elias; Saunders, Kate

    2012-12-01

    Erta Ale volcano, Ethiopia, erupted in November 2010, emplacing new lava flows on the main crater floor, the first such eruption from the southern pit into the main crater since 1973, and the first eruption at this remote volcano in the modern satellite age. For many decades, Erta Ale has contained a persistently active lava lake which is ordinarily confined, several tens of metres below the level of the main crater, within the southern pit. We combine on-the-ground field observations with multispectral imaging from the SEVIRI satellite to reconstruct the entire eruptive episode beginning on 11 November and ending prior to 14 December 2010. A period of quiescence occurred between 14 and 19 November. The main eruptive activity developed between 19 and 22 November, finally subsiding to pre-eruptive levels between 8 and 15 December. The estimated total volume of lava erupted is ˜0.006 km3. The mineralogy of the 2010 lava is plagioclase + clinopyroxene + olivine. Geochemically, the lava is slightly more mafic than previously erupted lava lining the caldera floor, but lies within the range of historical lavas from Erta Ale. SIMS analysis of olivine-hosted melt inclusions shows the Erta Ale lavas to be relatively volatile-poor, with H2O contents ≤1,300 ppm and CO2 contents of ≤200 ppm. Incompatible trace and volatile element systematics of melt inclusions show, however, that the November 2010 lavas were volatile-saturated, and that degassing and crystallisation occurred concomitantly. Volatile saturation pressures are in the range 7-42 MPa, indicating shallow crystallisation. Calculated pre-eruption and melt inclusion entrapment temperatures from mineral/liquid thermometers are ˜1,150 °C, consistent with previously published field measurements.

  2. Performance evaluation of a mobile satellite system modem using an ALE method

    NASA Technical Reports Server (NTRS)

    Ohsawa, Tomoki; Iwasaki, Motoya

    1990-01-01

    Experimental performance of a newly designed demodulation concept is presented. This concept applies an Adaptive Line Enhancer (ALE) to a carrier recovery circuit, which makes pull-in time significantly shorter in noisy and large carrier offset conditions. This new demodulation concept was actually developed as an INMARSAT standard-C modem, and was evaluated. On a performance evaluation, 50 symbol pull-in time is confirmed under 4 dB Eb/No condition.

  3. RADONE: a computer code for simulating fast-transient, one-dimensional hydrodynamic conditions and two-layer radionuclide concentrations including the effect of bed-deposition in controlled rivers and tidal estuaries

    SciTech Connect

    Eraslan, A.H.; Abdel-Razek, M.M.

    1985-05-01

    RADONE is a computer code for predicting the transient, one-dimensional transport of radiouclides in receiving water bodies. The model formulation considers the one-dimensional (cross-sectionally averaged) conservation of mass and momentum equations and the two coupled, depth-averaged radionuclide transport equations for the water layer and the bottom sediment layer. The coupling conditions incorporate bottom deposition and resuspension effects. The computer code uses a discrete-element method that offers variable river cross-section spacing, accurate representation of cross-sectional geometry, and numerical accuracy. A sample application is provided for the problem of hypothetical accidental releases and actual routine releases of radionuclides to the Hudson River.

  4. Mapping anhedonia-specific dysfunction in a transdiagnostic approach: an ALE meta-analysis.

    PubMed

    Zhang, Bei; Lin, Pan; Shi, Huqing; Öngür, Dost; Auerbach, Randy P; Wang, Xiaosheng; Yao, Shuqiao; Wang, Xiang

    2016-09-01

    Anhedonia is a prominent symptom in neuropsychiatric disorders, most markedly in major depressive disorder (MDD) and schizophrenia (SZ). Emerging evidence indicates an overlap in the neural substrates of anhedonia between MDD and SZ, which supported a transdiagnostic approach. Therefore, we used activation likelihood estimation (ALE) meta-analysis of functional magnetic resonance imaging studies in MDD and SZ to examine the neural bases of three subdomains of anhedonia: consummatory anhedonia, anticipatory anhedonia and emotional processing. ALE analysis focused specifically on MDD or SZ was used later to dissociate specific anhedonia-related neurobiological impairments from potential disease general impairments. ALE results revealed that consummatory anhedonia was associated with decreased activation in ventral basal ganglia areas, while anticipatory anhedonia was associated with more substrates in frontal-striatal networks except the ventral striatum, which included the dorsal anterior cingulate, middle frontal gyrus and medial frontal gyrus. MDD and SZ patients showed similar neurobiological impairments in anticipatory and consummatory anhedonia, but differences in the emotional experience task, which may also involve affective/mood general processing. These results support that anhedonia is characterized by alterations in reward processing and relies on frontal-striatal brain circuitry. The transdiagnostic approach is a promising way to reveal the overall neurobiological framework that contributes to anhedonia and could help to improve targeted treatment strategies. PMID:26487590

  5. Ecological perspectives of land use history: The Arid Lands Ecology (ALE) Reserve

    SciTech Connect

    Hinds, N R; Rogers, L E

    1991-07-01

    The objective of this study was to gather information on the land use history of the Arid Land Ecology (ALE) Reserve so that current ecological research could be placed within a historical perspective. The data were gathered in the early 1980s by interviewing former users of the land and from previously published research (where available). Interviews with former land users of the ALE Reserve in Benton County, Washington, revealed that major land uses from 1880 to 1940 were homesteading, grazing, oil/gas production, and road building. Land use practices associated with grazing and homesteading have left the greatest impact on the landscape. Disturbed sites where succession is characterized by non-native species, plots where sagebrush was railed away, and sheep trails are major indications today of past land uses. Recent estimates of annual bunchgrass production do ALE do not support the widespread belief that bunchgrass were more productive during the homesteading era, though the invasion of cheatgrass (Bromus tectorum), Jim Hill mustard (Sisymbrium altissium), and other European alien plant species has altered pre-settlement succession patterns. 15 refs., 6 figs., 1 tab.

  6. Coordinate-based (ALE) meta-analysis of brain activation in patients with fibromyalgia.

    PubMed

    Dehghan, Mahboobeh; Schmidt-Wilcke, Tobias; Pfleiderer, Bettina; Eickhoff, Simon B; Petzke, Frank; Harris, Richard E; Montoya, Pedro; Burgmer, Markus

    2016-05-01

    There are an increasing number of neuroimaging studies that allow a better understanding of symptoms, neural correlates and associated conditions of fibromyalgia. However, the results of these studies are difficult to compare, as they include a heterogeneous group of patients, use different stimulation paradigms, tasks, and the statistical evaluation of neuroimaging data shows high variability. Therefore, this meta-analytic approach aimed at evaluating potential alterations in neuronal brain activity or structure related to pain processing in fibromyalgia syndrome (FMS) patients, using quantitative coordinate-based "activation likelihood estimation" (ALE) meta-analysis. 37 FMS papers met the inclusion criteria for an ALE analysis (1,264 subjects, 274 activation foci). A pooled ALE analysis of different modalities of neuroimaging and additional analyses according functional and structural changes indicated differences between FMS patients and controls in the insula, amygdala, anterior/mid cingulate cortex, superior temporal gyrus, the primary and secondary somatosensory cortex, and lingual gyrus. Our analysis showed consistent results across FMS studies with potential abnormalities especially in pain-related brain areas. Given that similar alterations have already been demonstrated in patients with other chronic pain conditions and the lack of adequate control groups of chronic pain subjects in most FMS studies, it is not clear however, whether these findings are associated with chronic pain in general or are unique features of patients with FMS. Hum Brain Mapp 37:1749-1758, 2016. © 2016 Wiley Periodicals, Inc. PMID:26864780

  7. Implications of longeval lava lakes for geomorphological and plutonic processes at Erta 'Ale volcano, Afar

    NASA Astrophysics Data System (ADS)

    Oppenheimer, Clive; Francis, Peter

    1998-01-01

    Erta 'Ale volcano, sited within the Afar Triangle of Ethiopia, is one of the least visited of perennially active, subaerial volcanoes. Satellite images recorded over the past thirty years illustrate the sustained activity of the volcano and complement the few brief periods of field observation. We consider that Erta 'Ale's lava lakes have probably persisted for ≥ 90 years, placing them among the longest-lived yet recorded. Despite sustained surface heat fluxes of 100-400 MW, the net surface growth rate integrated over the interval 1968-1995 was only ≈ 10 kg s -1. We speculate that this minimal lava discharge cannot be used to infer a low magma supply rate to the volcano, since heat losses from die lava lakes inhibit eruption by increasing magma density. This implies growth of the underlying crust by formation of dikes and sills containing cumulates, accommodated, and possibly promoted, by regional extension and intrusion loading. Open vent degassing and rift kinematics are clearly reflected in Erta 'Ale's morphology which is characterised by very gentle (< 3 °) slopes and a summit caldera.

  8. Mapping anhedonia-specific dysfunction in a transdiagnostic approach: an ALE meta-analysis

    PubMed Central

    Zhang, Bei; Lin, Pan; Shi, Huqing; Öngür, Dost; Auerbach, Randy P.; Wang, Xiaosheng; Yao, Shuqiao

    2015-01-01

    Anhedonia is a prominent symptom in neuropsychiatric disorders, most markedly in major depressive disorder (MDD) and schizophrenia (SZ). Emerging evidence indicates an overlap in the neural substrates of anhedonia between MDD and SZ, which supported a transdiagnostic approach. Therefore, we used activation likelihood estimation (ALE) meta-analysis of functional magnetic resonance imaging studies in MDD and SZ to examine the neural bases of three subdomains of anhedonia: consummatory anhedonia, anticipatory anhedonia and emotional processing. ALE analysis focused specifically on MDD or SZ was used later to dissociate specific anhedonia-related neurobiological impairments from potential disease general impairments. ALE results revealed that consummatory anhedonia was associated with decreased activation in ventral basal ganglia areas, while anticipatory anhedonia was associated with more substrates in frontal-striatal networks except the ventral striatum, which included the dorsal anterior cingulate, middle frontal gyrus and medial frontal gyrus. MDD and SZ patients showed similar neurobiological impairments in anticipatory and consummatory anhedonia, but differences in the emotional experience task, which may also involve affective/mood general processing. These results support that anhedonia is characterized by alterations in reward processing and relies on frontal-striatal brain circuitry. The transdiagnostic approach is a promising way to reveal the overall neurobiological framework that contributes to anhedonia and could help to improve targeted treatment strategies. PMID:26487590

  9. Microbial diversity and metabolite composition of Belgian red-brown acidic ales.

    PubMed

    Snauwaert, Isabel; Roels, Sanne P; Van Nieuwerburg, Filip; Van Landschoot, Anita; De Vuyst, Luc; Vandamme, Peter

    2016-03-16

    Belgian red-brown acidic ales are sour and alcoholic fermented beers, which are produced by mixed-culture fermentation and blending. The brews are aged in oak barrels for about two years, after which mature beer is blended with young, non-aged beer to obtain the end-products. The present study evaluated the microbial community diversity of Belgian red-brown acidic ales at the end of the maturation phase of three subsequent brews of three different breweries. The microbial diversity was compared with the metabolite composition of the brews at the end of the maturation phase. Therefore, mature brew samples were subjected to 454 pyrosequencing of the 16S rRNA gene (bacteria) and the internal transcribed spacer region (yeasts) and a broad range of metabolites was quantified. The most important microbial species present in the Belgian red-brown acidic ales investigated were Pediococcus damnosus, Dekkera bruxellensis, and Acetobacter pasteurianus. In addition, this culture-independent analysis revealed operational taxonomic units that were assigned to an unclassified fungal community member, Candida, and Lactobacillus. The main metabolites present in the brew samples were L-lactic acid, D-lactic acid, and ethanol, whereas acetic acid was produced in lower quantities. The most prevailing aroma compounds were ethyl acetate, isoamyl acetate, ethyl hexanoate, and ethyl octanoate, which might be of impact on the aroma of the end-products. PMID:26802571

  10. Nonlinear hydrodynamics of cosmological sheets. 1: Numerical techniques and tests

    NASA Technical Reports Server (NTRS)

    Anninos, Wenbo Y.; Norman, Michael J.

    1994-01-01

    We present the numerical techniques and tests used to construct and validate a computer code designed to study the multidimensional nonlinear hydrodynamics of large-scale sheet structures in the universe, especially the fragmentation of such structures under various instabilities. This code is composed of two codes, the hydrodynamical code ZEUS-2D and a particle-mesh code. The ZEUS-2D code solves the hydrodynamical equations in two dimensions using explicit Eulerian finite-difference techniques, with modifications made to incorporate the expansion of the universe and the gas cooling due to Compton scattering, bremsstrahlung, and hydrogen and helium cooling. The particle-mesh code solves the equation of motion for the collisionless dark matter. The code uses two-dimensional Cartesian coordinates with a nonuniform grid in one direction to provide high resolution for the sheet structures. A series of one-dimensional and two-dimensional linear perturbation tests are presented which are designed to test the hydro solver and the Poisson solver with and without the expansion of the universe. We also present a radiative shock wave test which is designed to ensure the code's capability to handle radiative cooling properly. And finally a series of one-dimensional Zel'dovich pancake tests used to test the dark matter code and the hydro solver in the nonlinear regime are discussed and compared with the results of Bond et al. (1984) and Shapiro & Struck-Marcell (1985). Overall, the code is shown to produce accurate and stable results, which provide us a powerful tool to further our studies.

  11. Hydrodynamic Simulations of Contact Binaries

    NASA Astrophysics Data System (ADS)

    Kadam, Kundan; Clayton, Geoffrey C.; Frank, Juhan; Marcello, Dominic; Motl, Patrick M.; Staff, Jan E.

    2015-01-01

    The motivation for our project is the peculiar case of the 'red nova" V1309 Sco which erupted in September 2008. The progenitor was, in fact, a contact binary system. We are developing a simulation of contact binaries, so that their formation, structural, and merger properties could be studied using hydrodynamics codes. The observed transient event was the disruption of the secondary star by the primary, and their subsequent merger into one star; hence to replicate this behavior, we need a core-envelope structure for both the stars. We achieve this using a combination of Self Consistant Field (SCF) technique and composite polytropes, also known as bipolytropes. So far we have been able to generate close binaries with various mass ratios. Another consequence of using bipolytropes is that according to theoretical calculations, the radius of a star should expand when the core mass fraction exceeds a critical value, resulting in interesting consequences in a binary system. We present some initial results of these simulations.

  12. Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast.

    PubMed

    Vidgren, Virve; Kankainen, Matti; Londesborough, John; Ruohonen, Laura

    2011-08-01

    Agt1 is an interesting α-glucoside transporter for the brewing industry, as it efficiently transports maltotriose, a sugar often remaining partly unused during beer fermentation. It has been shown that on maltose the expression level of AGT1 is much higher in ale strains than in lager strains, and that glucose represses the expression, particularly in the ale strains. In the present study the regulatory elements of the AGT1 promoter of one ale and two lager strains were identified by computational methods. Promoter regions up to 1.9 kbp upstream of the AGT1 gene were sequenced from the three brewer's yeast strains and the laboratory yeast strain CEN.PK-1D. The promoter sequence of the laboratory strain was identical to the AGT1 promoter of strain S288c of the Saccharomyces Genome Database, whereas the promoter sequences of the industrial strains diverged markedly from the S288c strain. The AGT1 promoter regions of the ale and lager strains were for the most part identical to each other, except for one 22 bp deletion and two 94 and 95 bp insertions in the ale strain. Computational analyses of promoter elements revealed that the promoter sequences contained several Mig1- and MAL-activator binding sites, as was expected. However, some of the Mig1 and MAL-activator binding sites were located on the two insertions of the ale strain, and thus offered a plausible explanation for the different expression pattern of the AGT1 gene in the ale strains. Accordingly, functional analysis of A60 ale and A15 lager strain AGT1 promoters fused to GFP (encoding the green fluorescent protein) showed a significant difference in the ability of these two promoters to drive GFP expression. Under the control of the AGT1 promoter of the ale strain the emergence of GFP was strongly induced by maltose, whereas only a low level of GFP was detected with the construct carrying the AGT1 promoter of the lager strain. Thus, the extra MAL-activator binding element, present in the AGT1 promoter of

  13. Impact modeling with Smooth Particle Hydrodynamics

    SciTech Connect

    Stellingwerf, R.F.; Wingate, C.A.

    1993-07-01

    Smooth Particle Hydrodynamics (SPH) can be used to model hypervelocity impact phenomena via the addition of a strength of materials treatment. SPH is the only technique that can model such problems efficiently due to the combination of 3-dimensional geometry, large translations of material, large deformations, and large void fractions for most problems of interest. This makes SPH an ideal candidate for modeling of asteroid impact, spacecraft shield modeling, and planetary accretion. In this paper we describe the derivation of the strength equations in SPH, show several basic code tests, and present several impact test cases with experimental comparisons.

  14. VAC: Versatile Advection Code

    NASA Astrophysics Data System (ADS)

    Tóth, Gábor; Keppens, Rony

    2012-07-01

    The Versatile Advection Code (VAC) is a freely available general hydrodynamic and magnetohydrodynamic simulation software that works in 1, 2 or 3 dimensions on Cartesian and logically Cartesian grids. VAC runs on any Unix/Linux system with a Fortran 90 (or 77) compiler and Perl interpreter. VAC can run on parallel machines using either the Message Passing Interface (MPI) library or a High Performance Fortran (HPF) compiler.

  15. RHALE: A 3-D MMALE code for unstructured grids

    SciTech Connect

    Peery, J.S.; Budge, K.G.; Wong, M.K.W.; Trucano, T.G.

    1993-08-01

    This paper describes RHALE, a multi-material arbitrary Lagrangian-Eulerian (MMALE) shock physics code. RHALE is the successor to CTH, Sandia`s 3-D Eulerian shock physics code, and will be capable of solving problems that CTH cannot adequately address. We discuss the Lagrangian solid mechanics capabilities of RHALE, which include arbitrary mesh connectivity, superior artificial viscosity, and improved material models. We discuss the MMALE algorithms that have been extended for arbitrary grids in both two- and three-dimensions. The MMALE addition to RHALE provides the accuracy of a Lagrangian code while allowing a calculation to proceed under very large material distortions. Coupling an arbitrary quadrilateral or hexahedral grid to the MMALE solution facilitates modeling of complex shapes with a greatly reduced number of computational cells. RHALE allows regions of a problem to be modeled with Lagrangian, Eulerian or ALE meshes. In addition, regions can switch from Lagrangian to ALE to Eulerian based on user input or mesh distortion. For ALE meshes, new node locations are determined with a variety of element based equipotential schemes. Element quantities are advected with donor, van Leer, or Super-B algorithms. Nodal quantities are advected with the second order SHALE or HIS algorithms. Material interfaces are determined with a modified Young`s high resolution interface tracker or the SLIC algorithm. RHALE has been used to model many problems of interest to the mechanics, hypervelocity impact, and shock physics communities. Results of a sampling of these problems are presented in this paper.

  16. Hydrodynamic modes for granular gases.

    PubMed

    Dufty, James W; Brey, J Javier

    2003-09-01

    The eigenfunctions and eigenvalues of the linearized Boltzmann equation for inelastic hard spheres (d=3) or disks (d=2) corresponding to d+2 hydrodynamic modes are calculated in the long wavelength limit for a granular gas. The transport coefficients are identified and found to agree with those from the Chapman-Enskog solution. The dominance of hydrodynamic modes at long times and long wavelengths is studied via an exactly solvable kinetic model. A collisional continuum is bounded away from the hydrodynamic spectrum, assuring a hydrodynamic description at long times. The bound is closely related to the power law decay of the velocity distribution in the reference homogeneous cooling state. PMID:14524742

  17. Molecular Hydrodynamics from Memory Kernels.

    PubMed

    Lesnicki, Dominika; Vuilleumier, Rodolphe; Carof, Antoine; Rotenberg, Benjamin

    2016-04-01

    The memory kernel for a tagged particle in a fluid, computed from molecular dynamics simulations, decays algebraically as t^{-3/2}. We show how the hydrodynamic Basset-Boussinesq force naturally emerges from this long-time tail and generalize the concept of hydrodynamic added mass. This mass term is negative in the present case of a molecular solute, which is at odds with incompressible hydrodynamics predictions. Lastly, we discuss the various contributions to the friction, the associated time scales, and the crossover between the molecular and hydrodynamic regimes upon increasing the solute radius. PMID:27104730

  18. Load responsive hydrodynamic bearing

    DOEpatents

    Kalsi, Manmohan S.; Somogyi, Dezso; Dietle, Lannie L.

    2002-01-01

    A load responsive hydrodynamic bearing is provided in the form of a thrust bearing or journal bearing for supporting, guiding and lubricating a relatively rotatable member to minimize wear thereof responsive to relative rotation under severe load. In the space between spaced relatively rotatable members and in the presence of a liquid or grease lubricant, one or more continuous ring shaped integral generally circular bearing bodies each define at least one dynamic surface and a plurality of support regions. Each of the support regions defines a static surface which is oriented in generally opposed relation with the dynamic surface for contact with one of the relatively rotatable members. A plurality of flexing regions are defined by the generally circular body of the bearing and are integral with and located between adjacent support regions. Each of the flexing regions has a first beam-like element being connected by an integral flexible hinge with one of the support regions and a second beam-like element having an integral flexible hinge connection with an adjacent support region. A least one local weakening geometry of the flexing region is located intermediate the first and second beam-like elements. In response to application of load from one of the relatively rotatable elements to the bearing, the beam-like elements and the local weakening geometry become flexed, causing the dynamic surface to deform and establish a hydrodynamic geometry for wedging lubricant into the dynamic interface.

  19. Hydrodynamics of pronuclear migration

    NASA Astrophysics Data System (ADS)

    Nazockdast, Ehssan; Needleman, Daniel; Shelley, Michael

    2014-11-01

    Microtubule (MT) filaments play a key role in many processes involved in cell devision including spindle formation, chromosome segregation, and pronuclear positioning. We present a direct numerical technique to simulate MT dynamics in such processes. Our method includes hydrodynamically mediated interactions between MTs and other cytoskeletal objects, using singularity methods for Stokes flow. Long-ranged many-body hydrodynamic interactions are computed using a highly efficient and scalable fast multipole method, enabling the simulation of thousands of MTs. Our simulation method also takes into account the flexibility of MTs using Euler-Bernoulli beam theory as well as their dynamic instability. Using this technique, we simulate pronuclear migration in single-celled Caenorhabditis elegans embryos. Two different positioning mechanisms, based on the interactions of MTs with the motor proteins and the cell cortex, are explored: cytoplasmic pulling and cortical pushing. We find that although the pronuclear complex migrates towards the center of the cell in both models, the generated cytoplasmic flows are fundamentally different. This suggest that cytoplasmic flow visualization during pronuclear migration can be utilized to differentiate between the two mechanisms.

  20. Hydrodynamic Studies of Turbulent AGN Tori

    NASA Astrophysics Data System (ADS)

    Schartmann, M.; Meisenheimer, K.; Klahr, H.; Camenzind, M.; Wolf, S.; Henning, Th.; Burkert, A.; Krause, M.

    2011-01-01

    Recently, the MID-infrared Interferometric instrument (MIDI) at the VLTI has shown that dust tori in the two nearby Seyfert galaxies NGC 1068 and the Circinus galaxy are geometrically thick and can be well described by a thin, warm central disk, surrounded by a colder and fluffy torus component. By carrying out hydrodynamical simulations with the help of the TRAMP code (Klahr et al. 1999), we follow the evolution of a young nuclear star cluster in terms of discrete mass-loss and energy injection from stellar processes. This naturally leads to a filamentary large scale torus component, where cold gas is able to flow radially inwards. The filaments join into a dense and very turbulent disk structure. In a post-processing step, we calculate spectral energy distributions and images with the 3D radiative transfer code MC3D Wolf (2003) and compare them to observations. Turbulence in the dense disk component is investigated in a separate project.

  1. The moving mesh code SHADOWFAX

    NASA Astrophysics Data System (ADS)

    Vandenbroucke, B.; De Rijcke, S.

    2016-07-01

    We introduce the moving mesh code SHADOWFAX, which can be used to evolve a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. The code is written in C++ and its source code is made available to the scientific community under the GNU Affero General Public Licence. We outline the algorithm and the design of our implementation, and demonstrate its validity through the results of a set of basic test problems, which are also part of the public version. We also compare SHADOWFAX with a number of other publicly available codes using different hydrodynamical integration schemes, illustrating the advantages and disadvantages of the moving mesh technique.

  2. Effect of Second-Order Hydrodynamics on a Floating Offshore Wind Turbine

    SciTech Connect

    Roald, L.; Jonkman, J.; Robertson, A.

    2014-05-01

    The design of offshore floating wind turbines uses design codes that can simulate the entire coupled system behavior. At the present, most codes include only first-order hydrodynamics, which induce forces and motions varying with the same frequency as the incident waves. Effects due to second- and higher-order hydrodynamics are often ignored in the offshore industry, because the forces induced typically are smaller than the first-order forces. In this report, first- and second-order hydrodynamic analysis used in the offshore oil and gas industry is applied to two different wind turbine concepts--a spar and a tension leg platform.

  3. Hydrodynamics of shear coaxial liquid rocket injectors

    NASA Astrophysics Data System (ADS)

    Tsohas, John

    Hydrodynamic instabilities within injector passages can couple to chamber acoustic modes and lead to unacceptable levels of combustion instabilities inside liquid rocket engines. The instability of vena-contracta regions and mixing between fuel and oxidizer can serve as a fundamental source of unsteadiness produced by the injector, even in the absence of upstream or downstream pressure perturbations. This natural or "unforced" response can provide valuable information regarding frequencies where the element could conceivably couple to chamber modes. In particular, during throttled conditions the changes in the injector response may lead to an alignment of the injector and chamber modes. For these reasons, the basic unforced response of the injector element is of particular interest when developing a new engine. The Loci/Chem code was used to perform single-element, 2-D unsteady CFD computations on the Hydrogen/Oxygen Multi-Element Experiment (HOMEE) injector which was hot-fire tested at Purdue University. The Loci/Chem code was used to evaluate the effects of O/F ratio, LOX post thickness, recess length and LOX tube length on the hydrodynamics of shear co-axial rocket injectors.

  4. Hydrodynamics, resurgence, and transasymptotics

    NASA Astrophysics Data System (ADS)

    Başar, Gökçe; Dunne, Gerald V.

    2015-12-01

    The second order hydrodynamical description of a homogeneous conformal plasma that undergoes a boost-invariant expansion is given by a single nonlinear ordinary differential equation, whose resurgent asymptotic properties we study, developing further the recent work of Heller and Spalinski [Phys. Rev. Lett. 115, 072501 (2015)]. Resurgence clearly identifies the nonhydrodynamic modes that are exponentially suppressed at late times, analogous to the quasinormal modes in gravitational language, organizing these modes in terms of a trans-series expansion. These modes are analogs of instantons in semiclassical expansions, where the damping rate plays the role of the instanton action. We show that this system displays the generic features of resurgence, with explicit quantitative relations between the fluctuations about different orders of these nonhydrodynamic modes. The imaginary part of the trans-series parameter is identified with the Stokes constant, and the real part with the freedom associated with initial conditions.

  5. Hydrodynamics of Peristaltic Propulsion

    NASA Astrophysics Data System (ADS)

    Athanassiadis, Athanasios; Hart, Douglas

    2014-11-01

    A curious class of animals called salps live in marine environments and self-propel by ejecting vortex rings much like jellyfish and squid. However, unlike other jetting creatures that siphon and eject water from one side of their body, salps produce vortex rings by pumping water through siphons on opposite ends of their hollow cylindrical bodies. In the simplest cases, it seems like some species of salp can successfully move by contracting just two siphons connected by an elastic body. When thought of as a chain of timed contractions, salp propulsion is reminiscent of peristaltic pumping applied to marine locomotion. Inspired by salps, we investigate the hydrodynamics of peristaltic propulsion, focusing on the scaling relationships that determine flow rate, thrust production, and energy usage in a model system. We discuss possible actuation methods for a model peristaltic vehicle, considering both the material and geometrical requirements for such a system.

  6. Hydrodynamics of Turning Flocks

    NASA Astrophysics Data System (ADS)

    Yang, Xingbo; Marchetti, M. Cristina

    2015-03-01

    We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well polarized flocks. The continuum equations are derived by coarse graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields spin waves that mediate the propagation of turning information throughout the flock. When the inertia is large, we find a novel instability that signals the transition to complex spatio-temporal patterns of continuously turning and swirling flocks. This work was supported by the NSF Awards DMR-1305184 and DGE-1068780 at Syracuse University and NSF Award PHY11-25915 and the Gordon and Betty Moore Foundation Grant No. 2919 at the KITP at the University of California, Santa Barbara.

  7. Hydrodynamic effects on coalescence.

    SciTech Connect

    Dimiduk, Thomas G.; Bourdon, Christopher Jay; Grillet, Anne Mary; Baer, Thomas A.; de Boer, Maarten Pieter; Loewenberg, Michael; Gorby, Allen D.; Brooks, Carlton, F.

    2006-10-01

    The goal of this project was to design, build and test novel diagnostics to probe the effect of hydrodynamic forces on coalescence dynamics. Our investigation focused on how a drop coalesces onto a flat surface which is analogous to two drops coalescing, but more amenable to precise experimental measurements. We designed and built a flow cell to create an axisymmetric compression flow which brings a drop onto a flat surface. A computer-controlled system manipulates the flow to steer the drop and maintain a symmetric flow. Particle image velocimetry was performed to confirm that the control system was delivering a well conditioned flow. To examine the dynamics of the coalescence, we implemented an interferometry capability to measure the drainage of the thin film between the drop and the surface during the coalescence process. A semi-automated analysis routine was developed which converts the dynamic interferogram series into drop shape evolution data.

  8. Synchronization and hydrodynamic interactions

    NASA Astrophysics Data System (ADS)

    Powers, Thomas; Qian, Bian; Breuer, Kenneth

    2008-03-01

    Cilia and flagella commonly beat in a coordinated manner. Examples include the flagella that Volvox colonies use to move, the cilia that sweep foreign particles up out of the human airway, and the nodal cilia that set up the flow that determines the left-right axis in developing vertebrate embryos. In this talk we present an experimental study of how hydrodynamic interactions can lead to coordination in a simple idealized system: two nearby paddles driven with fixed torques in a highly viscous fluid. The paddles attain a synchronized state in which they rotate together with a phase difference of 90 degrees. We discuss how synchronization depends on system parameters and present numerical calculations using the method of regularized stokeslets.

  9. Prototype Mixed Finite Element Hydrodynamics Capability in ARES

    SciTech Connect

    Rieben, R N

    2008-07-10

    This document describes work on a prototype Mixed Finite Element Method (MFEM) hydrodynamics algorithm in the ARES code, and its application to a set of standard test problems. This work is motivated by the need for improvements to the algorithms used in the Lagrange hydrodynamics step to make them more robust. We begin by identifying the outstanding issues with traditional numerical hydrodynamics algorithms followed by a description of the proposed method and how it may address several of these longstanding issues. We give a theoretical overview of the proposed MFEM algorithm as well as a summary of the coding additions and modifications that were made to add this capability to the ARES code. We present results obtained with the new method on a set of canonical hydrodynamics test problems and demonstrate significant improvement in comparison to results obtained with traditional methods. We conclude with a summary of the issues still at hand and motivate the need for continued research to develop the proposed method into maturity.

  10. Hydrodynamics of sediment threshold

    NASA Astrophysics Data System (ADS)

    Ali, Sk Zeeshan; Dey, Subhasish

    2016-07-01

    A novel hydrodynamic model for the threshold of cohesionless sediment particle motion under a steady unidirectional streamflow is presented. The hydrodynamic forces (drag and lift) acting on a solitary sediment particle resting over a closely packed bed formed by the identical sediment particles are the primary motivating forces. The drag force comprises of the form drag and form induced drag. The lift force includes the Saffman lift, Magnus lift, centrifugal lift, and turbulent lift. The points of action of the force system are appropriately obtained, for the first time, from the basics of micro-mechanics. The sediment threshold is envisioned as the rolling mode, which is the plausible mode to initiate a particle motion on the bed. The moment balance of the force system on the solitary particle about the pivoting point of rolling yields the governing equation. The conditions of sediment threshold under the hydraulically smooth, transitional, and rough flow regimes are examined. The effects of velocity fluctuations are addressed by applying the statistical theory of turbulence. This study shows that for a hindrance coefficient of 0.3, the threshold curve (threshold Shields parameter versus shear Reynolds number) has an excellent agreement with the experimental data of uniform sediments. However, most of the experimental data are bounded by the upper and lower limiting threshold curves, corresponding to the hindrance coefficients of 0.2 and 0.4, respectively. The threshold curve of this study is compared with those of previous researchers. The present model also agrees satisfactorily with the experimental data of nonuniform sediments.

  11. A Secret Decoder Ring for Volcanic Tremor: Method and Application to Erta 'Ale, Ethiopia

    NASA Astrophysics Data System (ADS)

    Jones, J. P.; Carniel, R.; Malone, S. D.

    2009-12-01

    A new method of analyzing volcanic tremor is presented, which uses properties of undecimated wavelet packet transforms to filter, decompose, and recover signals from continuous multichannel data. The method preserves many standard properties that are used to characterize tremor, such as wavefield polarization and seismic energy. In this way, we can better understand the (potentially many) seismic sources that combine to form continuous volcanic tremor, and we can specifically address the problem of what causes changing tremor spectral content. Using example data from two experiments at Erta 'Ale, Ethiopia, this method suggests that continuous volcanic tremor generally has multiple, simultaneously active seismic sources, not all of which are persistent. Our analysis suggests that continuous tremor was simultaneously generated at Erta 'Ale by magma flow in a conduit, degassing at a system of fumaroles, gas bubbles coalescing in the shallow, active lava lake, and degassing in a crater that formerly held a lava lake. Evidence for these diverse seismic sources can be seen in both the 2002 and 2003 data. Energy-based location of recovered signals from 2003 strongly supports this interpretation. The spectral transitions seen at Erta 'Ale in 2002 are resolved using this method, and result from secondary signals introduced during rapid convection. The signal which we interpret as being generated by magma flow in a conduit did not change between the two convective regimes. Thus, the recovered signals from the 2002 data argue strongly that changes in the rate of lava lake convection (and corresponding spectral changes) were driven entirely by shallow processes in the lava lake, rather than changing properties of the magma supply. This example demonstrates that using wavelet-based methods to understand the sources of continuous volcanic tremor can prove useful in understanding volcanic behavior, as well as detecting signals that relate to unrest.

  12. The ALE Discontinuous Galerkin Method for the Simulatio of Air Flow Through Pulsating Human Vocal Folds

    NASA Astrophysics Data System (ADS)

    Feistauer, Miloslav; Kučera, Václav; Prokopová, Jaroslav; Horáček, Jaromír

    2010-09-01

    The aim of this work is the simulation of viscous compressible flows in human vocal folds during phonation. The computational domain is a bounded subset of IR2, whose geometry mimics the shape of the human larynx. During phonation, parts of the solid impermeable walls are moving in a prescribed manner, thus simulating the opening and closing of the vocal chords. As the governing equations we take the compressible Navier-Stokes equations in ALE form. Space semidiscretization is carried out by the discontinuous Galerkin method combined with a linearized semi-implicit approach. Numerical experiments are performed with the resulting scheme.

  13. Afar unrest: the 2008 Alu eruption in the Erta `Ale volcanic system (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Pagli, C.; Wright, T. J.; Ayele, A.; Barnie, T.

    2009-04-01

    The Alu volcano is located within the Erta ‘Ale volcanic system in northern Afar (Ethiopia), about 30 km to the north of the Erta ‘Ale volcano whose summit caldera hosts a lava lake. Aster, Hotspot and S02 emissions images formed on 3rd November, 2008 showed that a fissural eruption was occurring east of the Alu volcano. Here we present an InSAR study of the area, using data from four tracks of the Envisat satellite both in descending ad ascending orbits, also including data in Wide Swath acquisition mode. The interferograms span different time periods allowing us to separate pre-, co- and post-eruptive deformation. In particular, an acquisition made on 3rd November at 19:20 (the day of the eruption) is used to observe deformation over two different co-eruptive periods. The co-eruptive interferograms show two closely-spaced but distinct concentric deformation patterns, both consistent with deflation, on the Alu volcano and on another unnamed volcano 3 km south of Alu. Most deformation in both volcanoes occurred during the first part of 3rd November (until 19:20) but significant deflation, up to ~ 45 cm, is also observed in the following interferogram from 3rd November at 19:20 to 8th December. Interestingly, no significant pre-eruptive deformation was observed in the area, nor any deformation was observed at the Erta ‘Ale lava lake prior to, during or after the Alu eruption. Preliminary modelling results, using two deflating Mogi sources, suggest that the two shallow magma chambers at ~1-1.5 km depth deflated during the eruption, with a volume change of the sources of ~-0.01 km3. Lack of pre-eruptive deformation suggests that the erupted magma was sitting at shallow depth under the Alu volcanoes. The lava lake in the nearby Erta 'Ale volcano also indicates that shallow magma reservoirs are a common feature in the area. We plan to model the observed deformations using different models, i.e. sill, penny shaped crack and ellipsoidal source and to compare our

  14. Migration trachéale d'une canule de trachéotomie: complication exceptionnelle

    PubMed Central

    Chouikh, Chakib; El Moqaddem, Amine; Benmakhlouf, Anas; Naanaa, Saad; El Koraichi, Alae; El Kettani, Salma; Jahidi, Ali

    2014-01-01

    La trachéotomie est un geste chirurgical de survie largement pratiqué dans les services des urgences et de réanimation. En fonction de l'indication de sa réalisation, elle peut être transitoire ou définitive. Dans ce dernier cas le port d'une canule de trachéotomie de manière prolongée peut exposer à certaines complications qui peuvent s'avérer graves. Nous présentons un cas très rare d'un enfant présentant un syndrome de Guillain Barré, trachéotomisé depuis 4 ans suite à une sténose trachéale par intubation prolongée et portant une canule de trachéotomie métallique de type KRISHABER qui s'est présenté aux urgences dans un tableau de détresse respiratoire suite à la migration trachéale de sa canule. La trachéotomie est l'ouverture à la peau de la trachée cervicale, et à la mise d'une canule qui a pour but de permettre la respiration en court-circuitant les voies aériennes supérieures. De réalisation simple et codifiée le plus souvent, elle présente des risques de complications post opératoires notamment tardives. Les plus décrites sont les granulomes, les sténoses trachéales, les infections, et les fistules. La migration trachéale de la canule de trachéotomie reste exceptionnelle. Elle résulte d'un mauvais entretien qui fragilise la canule et doit être prise en charge en urgence. La trachéotomie définitive nécessite une surveillance régulière, un entretien et des soins de canules rigoureux pour éviter la survenue de complications qui peuvent être graves. Chez l'enfant, l'utilisation de canules souples en PVC ou en silicone doit être préférée aux canules métalliques. PMID:25368730

  15. Hydrodynamic Simulations of Giant Impacts

    NASA Astrophysics Data System (ADS)

    Reinhardt, Christian; Stadel, Joachim

    2013-07-01

    We studied the basic numerical aspects of giant impacts using Smoothed Particles Hydrodynamics (SPH), which has been used in most of the prior studies conducted in this area (e.g., Benz, Canup). Our main goal was to modify the massive parallel, multi-stepping code GASOLINE widely used in cosmological simulations so that it can properly simulate the behavior of condensed materials such as granite or iron using the Tillotson equation of state. GASOLINE has been used to simulate hundreds of millions of particles for ideal gas physics so that using several millions of particles in condensed material simulations seems possible. In order to focus our attention of the numerical aspects of the problem we neglected the internal structure of the protoplanets and modelled them as homogenous (isothermal) granite spheres. For the energy balance we only considered PdV work and shock heating of the material during the impact (neglected cooling of the material). Starting at a low resolution of 2048 particles for the target and the impactor we run several simulations for different impact parameters and impact velocities and successfully reproduced the main features of the pioneering work of Benz from 1986. The impact sends a shock wave through both bodies heating the target and disrupting the remaining impactor. As in prior simulations material is ejected from the collision. How much, and whether it leaves the system or survives in an orbit for a longer time, depends on the initial conditions but also on resolution. Increasing the resolution (to 1.2x10⁶ particles) results in both a much clearer shock wave and deformation of the bodies during the impact and a more compact and detailed "arm" like structure of the ejected material. Currently we are investigating some numerical issues we encountered and are implementing differentiated models, making one step closer to more realistic protoplanets in such giant impact simulations.

  16. Multi-scale Godunov-type method for cell-centered discrete Lagrangian hydrodynamics

    NASA Astrophysics Data System (ADS)

    Maire, Pierre-Henri; Nkonga, Boniface

    2009-02-01

    This work presents a multi-dimensional cell-centered unstructured finite volume scheme for the solution of multimaterial compressible fluid flows written in the Lagrangian formalism. This formulation is considered in the Arbitrary-Lagrangian-Eulerian (ALE) framework with the constraint that the mesh velocity and the fluid velocity coincide. The link between the vertex velocity and the fluid motion is obtained by a formulation of the momentum conservation on a class of multi-scale encased volumes around mesh vertices. The vertex velocity is derived with a nodal Riemann solver constructed in such a way that the mesh motion and the face fluxes are compatible. Finally, the resulting scheme conserves both momentum and total energy and, it satisfies a semi-discrete entropy inequality. The numerical results obtained for some classical 2D and 3D hydrodynamic test cases show the robustness and the accuracy of the proposed algorithm.

  17. Hydrodynamic Elastic Magneto Plastic

    1985-02-01

    The HEMP code solves the conservation equations of two-dimensional elastic-plastic flow, in plane x-y coordinates or in cylindrical symmetry around the x-axis. Provisions for calculation of fixed boundaries, free surfaces, pistons, and boundary slide planes have been included, along with other special conditions.

  18. Recent development of hydrodynamic modeling

    NASA Astrophysics Data System (ADS)

    Hirano, Tetsufumi

    2014-09-01

    In this talk, I give an overview of recent development in hydrodynamic modeling of high-energy nuclear collisions. First, I briefly discuss about current situation of hydrodynamic modeling by showing results from the integrated dynamical approach in which Monte-Carlo calculation of initial conditions, quark-gluon fluid dynamics and hadronic cascading are combined. In particular, I focus on rescattering effects of strange hadrons on final observables. Next I highlight three topics in recent development in hydrodynamic modeling. These include (1) medium response to jet propagation in di-jet asymmetric events, (2) causal hydrodynamic fluctuation and its application to Bjorken expansion and (3) chiral magnetic wave from anomalous hydrodynamic simulations. (1) Recent CMS data suggest the existence of QGP response to propagation of jets. To investigate this phenomenon, we solve hydrodynamic equations with source term which exhibits deposition of energy and momentum from jets. We find a large number of low momentum particles are emitted at large angle from jet axis. This gives a novel interpretation of the CMS data. (2) It has been claimed that a matter created even in p-p/p-A collisions may behave like a fluid. However, fluctuation effects would be important in such a small system. We formulate relativistic fluctuating hydrodynamics and apply it to Bjorken expansion. We found the final multiplicity fluctuates around the mean value even if initial condition is fixed. This effect is relatively important in peripheral A-A collisions and p-p/p-A collisions. (3) Anomalous transport of the quark-gluon fluid is predicted when extremely high magnetic field is applied. We investigate this possibility by solving anomalous hydrodynamic equations. We found the difference of the elliptic flow parameter between positive and negative particles appears due to the chiral magnetic wave. Finally, I provide some personal perspective of hydrodynamic modeling of high energy nuclear collisions

  19. Constraining relativistic viscous hydrodynamical evolution

    SciTech Connect

    Martinez, Mauricio; Strickland, Michael

    2009-04-15

    We show that by requiring positivity of the longitudinal pressure it is possible to constrain the initial conditions one can use in second-order viscous hydrodynamical simulations of ultrarelativistic heavy-ion collisions. We demonstrate this explicitly for (0+1)-dimensional viscous hydrodynamics and discuss how the constraint extends to higher dimensions. Additionally, we present an analytic approximation to the solution of (0+1)-dimensional second-order viscous hydrodynamical evolution equations appropriate to describe the evolution of matter in an ultrarelativistic heavy-ion collision.

  20. Hydrodynamic body shape analysis and their impact on swimming performance.

    PubMed

    Li, Tian-Zeng; Zhan, Jie-Min

    2015-01-01

    This study presents the hydrodynamic characteristics of different adult male swimmer's body shape using computational fluid dynamics method. This simulation strategy is carried out by CFD fluent code with solving the 3D incompressible Navier-Stokes equations using the RNG k-ε turbulence closure. The water free surface is captured by the volume of fluid (VOF) method. A set of full body models, which is based on the anthropometrical characteristics of the most common male swimmers, is created by Computer Aided Industrial Design (CAID) software, Rhinoceros. The analysis of CFD results revealed that swimmer's body shape has a noticeable effect on the hydrodynamics performances. This explains why male swimmer with an inverted triangle body shape has good hydrodynamic characteristics for competitive swimming. PMID:26898107

  1. ALE3D Simulation of Heating and Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; Nichols, A L; deHaven, M R; Strand, O T

    2006-06-26

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  2. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-11-22

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  3. ALE Meta-Analysis of Schizophrenics Performing the N-Back Task

    NASA Astrophysics Data System (ADS)

    Harrell, Zachary

    2010-10-01

    MRI/fMRI has already proven itself as a valuable tool in the diagnosis and treatment of many illnesses of the brain, including cognitive problems. By exploiting the differences in magnetic susceptibility between oxygenated and deoxygenated hemoglobin, fMRI can measure blood flow in various regions of interest within the brain. This can determine the level of brain activity in relation to motor or cognitive functions and provide a metric for tissue damage or illness symptoms. Structural imaging techniques have shown lesions or deficiencies in tissue volumes in schizophrenics corresponding to areas primarily in the frontal and temporal lobes. These areas are currently known to be involved in working memory and attention, which many schizophrenics have trouble with. The ALE (Activation Likelihood Estimation) Meta-Analysis is able to statistically determine the significance of brain area activations based on the post-hoc combination of multiple studies. This process is useful for giving a general model of brain function in relation to a particular task designed to engage the affected areas (such as working memory for the n-back task). The advantages of the ALE Meta-Analysis include elimination of single subject anomalies, elimination of false/extremely weak activations, and verification of function/location hypotheses.

  4. The Atmospheric Lifetime Experiment and the Global Atmospheric Gas Experiment (ALE/GAGE)

    NASA Technical Reports Server (NTRS)

    Rasmussen, R. A.; Khalil, M. Aslam K.

    1995-01-01

    The ALE/GAGE project was designed to determine the global atmospheric lifetimes of the chlorofluorocarbons CCl3F and CCl2F2 (F-11 and F-12), which had been identified as the main gases that cause stratospheric ozone depletion. The experimental procedures also provided the concentrations of CH3CCl3, CCl4 and N2O. The extended role of the project was to evaluate the mass balances of these gases as well. Methylchloroform (CH3CCl3) serves as a tracer of average atmospheric OH concentrations and hence the oxidizing capacity of the atmosphere. Nitrous oxide (N2O) is a potent greenhouse gas and can also deplete the ozone layer. Measurements of these gases were taken with optimized instruments in the field at a frequency of about 1 sample/hr. Toward the end of the present project methane measurements were added to the program. The final report deals with the research of the Oregon Graduate Institute (OGI) as part of the ALE/GAGE program between 4/1/1988 and 1/31/1991. The report defines the scope of the OGI project, the approach, and the results.

  5. Voxel-Based Morphometry ALE meta-analysis of Bipolar Disorder

    NASA Astrophysics Data System (ADS)

    Magana, Omar; Laird, Robert

    2012-03-01

    A meta-analysis was performed independently to view the changes in gray matter (GM) on patients with Bipolar disorder (BP). The meta-analysis was conducted on a Talairach Space using GingerALE to determine the voxels and their permutation. In order to achieve the data acquisition, published experiments and similar research studies were uploaded onto the online Voxel-Based Morphometry database (VBM). By doing so, coordinates of activation locations were extracted from Bipolar disorder related journals utilizing Sleuth. Once the coordinates of given experiments were selected and imported to GingerALE, a Gaussian was performed on all foci points to create the concentration points of GM on BP patients. The results included volume reductions and variations of GM between Normal Healthy controls and Patients with Bipolar disorder. A significant amount of GM clusters were obtained in Normal Healthy controls over BP patients on the right precentral gyrus, right anterior cingulate, and the left inferior frontal gyrus. In future research, more published journals could be uploaded onto the database and another VBM meta-analysis could be performed including more activation coordinates or a variation of age groups.

  6. Validation of Air-Backed Underwater Explosion Experiments with ALE3D

    SciTech Connect

    Leininger, L D

    2005-02-04

    This paper summarizes an exercise carried out to validate the process of implementing LLNL's ALE3D to predict the permanent deformation and rupture of an air-backed steel plate subjected to underwater shock. Experiments were performed in a shock tank at the Naval Science and Technology Laboratory in Visakhapatnam India, and the results are documented in reference. A consistent set of air-backed plates is subjected to shocks from increasing weights of explosives ranging from 10g-80g. At 40g and above, rupture is recorded in the experiment and, without fracture mechanics implemented in ALE3D, only the cases of 10g, 20g, and 30g are presented here. This methodology applies the Jones-Wilkins-Lee (JWL) Equation of State (EOS) to predict the pressure of the expanding detonation products, the Gruneisein EOS for water under highly dynamic compressible flow - both on 1-point integrated 3-d continuum elements. The steel plates apply a bilinear elastic-plastic response with failure and are simulated with 3-point integrated shell elements. The failure for this exercise is based on effective (or equivalent) plastic strain.

  7. Shallow axial magma chamber at the slow-spreading Erta Ale Ridge

    NASA Astrophysics Data System (ADS)

    Pagli, Carolina; Wright, Tim J.; Ebinger, Cynthia J.; Yun, Sang-Ho; Cann, Johnson R.; Barnie, Talfan; Ayele, Atalay

    2012-04-01

    The existence of elongated, shallow magma chambers beneath the axes of fast-spreading mid-ocean ridges is well established. Yet, at slow-spreading ridges such shallow and elongated magma chambers are much less evident. Simple thermal models therefore predict that spreading velocity and magma supply may provide the main controls on magma-chamber depth and morphology. Here we use interferometric synthetic aperture radar data to investigate the dynamics of the magma chamber beneath the slow-spreading Erta Ale segment of the Ethiopian Rift. We show that an eruption from Alu-Dalafilla in November 2008 was sourced from a shallow, 1km deep, elongated magma chamber that is divided into two segments. The eruption was probably triggered by a small influx of magma into the northern segment. Both segments of the magma chamber fed the main eruption through a connecting dyke and both segments have been refilling rapidly since the eruption ended. Our results support the presence of independent sources of magma supply to segmented chambers located along the axes of spreading centres. However, the existence of a shallow, elongated axial chamber at Erta Ale indicates that spreading rate and magma supply may not be the only controls on magma-chamber characteristics.

  8. Spin hydrodynamic generation

    NASA Astrophysics Data System (ADS)

    Takahashi, R.; Matsuo, M.; Ono, M.; Harii, K.; Chudo, H.; Okayasu, S.; Ieda, J.; Takahashi, S.; Maekawa, S.; Saitoh, E.

    2016-01-01

    Magnetohydrodynamic generation is the conversion of fluid kinetic energy into electricity. Such conversion, which has been applied to various types of electric power generation, is driven by the Lorentz force acting on charged particles and thus a magnetic field is necessary. On the other hand, recent studies of spintronics have revealed the similarity between the function of a magnetic field and that of spin-orbit interactions in condensed matter. This suggests the existence of an undiscovered route to realize the conversion of fluid dynamics into electricity without using magnetic fields. Here we show electric voltage generation from fluid dynamics free from magnetic fields; we excited liquid-metal flows in a narrow channel and observed longitudinal voltage generation in the liquid. This voltage has nothing to do with electrification or thermoelectric effects, but turned out to follow a universal scaling rule based on a spin-mediated scenario. The result shows that the observed voltage is caused by spin-current generation from a fluid motion: spin hydrodynamic generation. The observed phenomenon allows us to make mechanical spin-current and electric generators, opening a door to fluid spintronics.

  9. Relativistic hydrodynamics on graphic cards

    NASA Astrophysics Data System (ADS)

    Gerhard, Jochen; Lindenstruth, Volker; Bleicher, Marcus

    2013-02-01

    We show how to accelerate relativistic hydrodynamics simulations using graphic cards (graphic processing units, GPUs). These improvements are of highest relevance e.g. to the field of high-energetic nucleus-nucleus collisions at RHIC and LHC where (ideal and dissipative) relativistic hydrodynamics is used to calculate the evolution of hot and dense QCD matter. The results reported here are based on the Sharp And Smooth Transport Algorithm (SHASTA), which is employed in many hydrodynamical models and hybrid simulation packages, e.g. the Ultrarelativistic Quantum Molecular Dynamics model (UrQMD). We have redesigned the SHASTA using the OpenCL computing framework to work on accelerators like graphic processing units (GPUs) as well as on multi-core processors. With the redesign of the algorithm the hydrodynamic calculations have been accelerated by a factor 160 allowing for event-by-event calculations and better statistics in hybrid calculations.

  10. Reciprocal relations in dissipationless hydrodynamics

    SciTech Connect

    Melnikovsky, L. A.

    2014-12-15

    Hidden symmetry in dissipationless terms of arbitrary hydrodynamics equations is recognized. We demonstrate that all fluxes are generated by a single function and derive conventional Euler equations using the proposed formalism.

  11. Boltzmann equation and hydrodynamic fluctuations.

    PubMed

    Colangeli, Matteo; Kröger, Martin; Ottinger, Hans Christian

    2009-11-01

    We apply the method of invariant manifolds to derive equations of generalized hydrodynamics from the linearized Boltzmann equation and determine exact transport coefficients, obeying Green-Kubo formulas. Numerical calculations are performed in the special case of Maxwell molecules. We investigate, through the comparison with experimental data and former approaches, the spectrum of density fluctuations and address the regime of finite Knudsen numbers and finite frequencies hydrodynamics. PMID:20364972

  12. Eightfold Classification of Hydrodynamic Dissipation.

    PubMed

    Haehl, Felix M; Loganayagam, R; Rangamani, Mukund

    2015-05-22

    We provide a complete characterization of hydrodynamic transport consistent with the second law of thermodynamics at arbitrary orders in the gradient expansion. A key ingredient in facilitating this analysis is the notion of adiabatic hydrodynamics, which enables isolation of the genuinely dissipative parts of transport. We demonstrate that most transport is adiabatic. Furthermore, in the dissipative part, only terms at the leading order in gradient expansion are constrained to be sign definite by the second law (as has been derived before). PMID:26047219

  13. Hemodynamics of a hydrodynamic injection

    PubMed Central

    Kanefuji, Tsutomu; Yokoo, Takeshi; Suda, Takeshi; Abe, Hiroyuki; Kamimura, Kenya; Liu, Dexi

    2014-01-01

    The hemodynamics during a hydrodynamic injection were evaluated using cone beam computed tomography (CBCT) and fluoroscopic imaging. The impacts of hydrodynamic (5 seconds) and slow (60 seconds) injections into the tail veins of mice were compared using 9% body weight of a phase-contrast medium. Hydrodynamically injected solution traveled to the heart and drew back to the hepatic veins (HV), which led to liver expansion and a trace amount of spillover into the portal vein (PV). The liver volumes peaked at 165.6 ± 13.3% and 165.5 ± 11.9% of the original liver volumes in the hydrodynamic and slow injections, respectively. Judging by the intensity of the CBCT images at the PV, HV, right atrium, liver parenchyma (LP), and the inferior vena cava (IVC) distal to the HV conjunction, the slow injection resulted in the higher intensity at PV than at LP. In contrast, a significantly higher intensity was observed in LP after hydrodynamic injection in comparison with that of PV, suggesting that the liver took up the iodine from the blood flow. These results suggest that the enlargement speed of the liver, rather than the expanded volume, primarily determines the efficiency of hydrodynamic delivery to the liver. PMID:26015971

  14. Slurry bubble column hydrodynamics

    NASA Astrophysics Data System (ADS)

    Rados, Novica

    Slurry bubble column reactors are presently used for a wide range of reactions in both chemical and biochemical industry. The successful design and scale up of slurry bubble column reactors require a complete understanding of multiphase fluid dynamics, i.e. phase mixing, heat and mass transport characteristics. The primary objective of this thesis is to improve presently limited understanding of the gas-liquid-solid slurry bubble column hydrodynamics. The effect of superficial gas velocity (8 to 45 cm/s), pressure (0.1 to 1.0 MPa) and solids loading (20 and 35 wt.%) on the time-averaged solids velocity and turbulent parameter profiles has been studied using Computer Automated Radioactive Particle Tracking (CARPT). To accomplish this, CARPT technique has been significantly improved for the measurements in highly attenuating systems, such as high pressure, high solids loading stainless steel slurry bubble column. At a similar set of operational conditions time-averaged gas and solids holdup profiles have been evaluated using the developed Computed Tomography (CT)/Overall gas holdup procedure. This procedure is based on the combination of the CT scans and the overall gas holdup measurements. The procedure assumes constant solids loading in the radial direction and axially invariant cross-sectionally averaged gas holdup. The obtained experimental holdup, velocity and turbulent parameters data are correlated and compared with the existing low superficial gas velocities and atmospheric pressure CARPT/CT gas-liquid and gas-liquid-solid slurry data. The obtained solids axial velocity radial profiles are compared with the predictions of the one dimensional (1-D) liquid/slurry recirculation phenomenological model. The obtained solids loading axial profiles are compared with the predictions of the Sedimentation and Dispersion Model (SDM). The overall gas holdup values, gas holdup radial profiles, solids loading axial profiles, solids axial velocity radial profiles and solids

  15. A Hydrochemical Hybrid Code for Astrophysical Problems. I. Code Verification and Benchmarks for a Photon-dominated Region (PDR)

    NASA Astrophysics Data System (ADS)

    Motoyama, Kazutaka; Morata, Oscar; Shang, Hsien; Krasnopolsky, Ruben; Hasegawa, Tatsuhiko

    2015-07-01

    A two-dimensional hydrochemical hybrid code, KM2, is constructed to deal with astrophysical problems that would require coupled hydrodynamical and chemical evolution. The code assumes axisymmetry in a cylindrical coordinate system and consists of two modules: a hydrodynamics module and a chemistry module. The hydrodynamics module solves hydrodynamics using a Godunov-type finite volume scheme and treats included chemical species as passively advected scalars. The chemistry module implicitly solves nonequilibrium chemistry and change of energy due to thermal processes with transfer of external ultraviolet radiation. Self-shielding effects on photodissociation of CO and H2 are included. In this introductory paper, the adopted numerical method is presented, along with code verifications using the hydrodynamics module and a benchmark on the chemistry module with reactions specific to a photon-dominated region (PDR). Finally, as an example of the expected capability, the hydrochemical evolution of a PDR is presented based on the PDR benchmark.

  16. ALES, the multi­mission Adaptive Leading Edge Sub­Waveform Retracker, design and validation

    NASA Astrophysics Data System (ADS)

    Passaro, Marcello; Benveniste, Jérôme; Vignudelli, Stefano; Cipollini, Paolo; Quartly, Graham; Snaith, Helen

    Satellite altimetry has revolutionized our understanding of ocean dynamics thanks to high repetition rate and global coverage. Nevertheless, coastal data has been flagged as unreliable due to land and calm water interference in the altimeter and radiometer footprint and high frequency tidal and atmospheric forcing. Our study addresses the first issue, i.e. retracking, presenting ALES, the Adaptive Leading Edge Subwaveform Retracker. ALES is potentially applicable to all the pulse­limited altimetry altimetry missions and its aim is to retrack with the same precision both open ocean and coastal data with the same algorithm. ALES selects part of each returned echo and models it with a classic ‘open ocean’ Brown functional form, by means of least square estimation whose convergence is found through the Nelder­Mead nonlinear optimization technique. By avoiding echoes from bright targets along the trailing edge, it is capable of retrieving the majority of coastal waveform up to 2 to 3 Km from the coasts. By adapting the estimation window to the significant wave height, it aims at preserving the precision of the standard data both in open ocean and in the coastal strip. ALES is validated against tide gauges in the Adriatic Sea and in the Greater Agulhas System for three different missions: Envisat, Jason­1 and Jason­2. Considerations on noise and biases provide a further verification of the strategy.

  17. 3D Hydrodynamic Simulations of Relativistic Jets

    NASA Astrophysics Data System (ADS)

    Hughes, P. A.; Miller, M. A.; Duncan, G. C.; Swift, C. M.

    1998-12-01

    We present the results of validation runs and the first extragalactic jet simulations performed with a 3D relativistic numerical hydrodynamic code employing a solver of the RHLLE type and using adaptive mesh refinement (AMR; Duncan & Hughes, 1994, Ap. J., 436, L119). Test problems include the shock tube, blast wave and spherical shock reflection (implosion). Trials with the code show that as a consequence of AMR it is viable to perform exploratory runs on workstation class machines (with no more than 128Mb of memory) prior to production runs. In the former case we achieve a resolution not much less than that normally regarded as the minimum needed to capture the essential physics of a problem, which means that such runs can provide valuable guidance allowing the optimum use of supercomputer resources. We present initial results from a program to explore the 3D stability properties of flows previously studied using a 2D axisymmetric code, and our first attempt to explore the structure and morphology of a relativistic jet encountering an ambient density gradient that mimics an ambient inhomogeneity or cloud.

  18. An analysis of smoothed particle hydrodynamics

    SciTech Connect

    Swegle, J.W.; Attaway, S.W.; Heinstein, M.W.; Mello, F.J.; Hicks, D.L.

    1994-03-01

    SPH (Smoothed Particle Hydrodynamics) is a gridless Lagrangian technique which is appealing as a possible alternative to numerical techniques currently used to analyze high deformation impulsive loading events. In the present study, the SPH algorithm has been subjected to detailed testing and analysis to determine its applicability in the field of solid dynamics. An important result of the work is a rigorous von Neumann stability analysis which provides a simple criterion for the stability or instability of the method in terms of the stress state and the second derivative of the kernel function. Instability, which typically occurs only for solids in tension, results not from the numerical time integration algorithm, but because the SPH algorithm creates an effective stress with a negative modulus. The analysis provides insight into possible methods for removing the instability. Also, SPH has been coupled into the transient dynamics finite element code PRONTO, and a weighted residual derivation of the SPH equations has been obtained.

  19. Clinical coding. Code breakers.

    PubMed

    Mathieson, Steve

    2005-02-24

    --The advent of payment by results has seen the role of the clinical coder pushed to the fore in England. --Examinations for a clinical coding qualification began in 1999. In 2004, approximately 200 people took the qualification. --Trusts are attracting people to the role by offering training from scratch or through modern apprenticeships. PMID:15768716

  20. The neuronal correlates of intranasal trigeminal function-an ALE meta-analysis of human functional brain imaging data.

    PubMed

    Albrecht, Jessica; Kopietz, Rainer; Frasnelli, Johannes; Wiesmann, Martin; Hummel, Thomas; Lundström, Johan N

    2010-03-01

    Almost every odor we encounter in daily life has the capacity to produce a trigeminal sensation. Surprisingly, few functional imaging studies exploring human neuronal correlates of intranasal trigeminal function exist, and results are to some degree inconsistent. We utilized activation likelihood estimation (ALE), a quantitative voxel-based meta-analysis tool, to analyze functional imaging data (fMRI/PET) following intranasal trigeminal stimulation with carbon dioxide (CO(2)), a stimulus known to exclusively activate the trigeminal system. Meta-analysis tools are able to identify activations common across studies, thereby enabling activation mapping with higher certainty. Activation foci of nine studies utilizing trigeminal stimulation were included in the meta-analysis. We found significant ALE scores, thus indicating consistent activation across studies, in the brainstem, ventrolateral posterior thalamic nucleus, anterior cingulate cortex, insula, precentral gyrus, as well as in primary and secondary somatosensory cortices-a network known for the processing of intranasal nociceptive stimuli. Significant ALE values were also observed in the piriform cortex, insula, and the orbitofrontal cortex, areas known to process chemosensory stimuli, and in association cortices. Additionally, the trigeminal ALE statistics were directly compared with ALE statistics originating from olfactory stimulation, demonstrating considerable overlap in activation. In conclusion, the results of this meta-analysis map the human neuronal correlates of intranasal trigeminal stimulation with high statistical certainty and demonstrate that the cortical areas recruited during the processing of intranasal CO(2) stimuli include those outside traditional trigeminal areas. Moreover, through illustrations of the considerable overlap between brain areas that process trigeminal and olfactory information; these results demonstrate the interconnectivity of flavor processing. PMID:19913573

  1. Diversity of Microfungi in Sandy Beach Soil of Teluk Aling, Pulau Pinang

    PubMed Central

    Zakaria, Latiffah; Yee, Teh Li; Zakaria, Maziah; Salleh, Baharuddin

    2011-01-01

    A total of 82 isolates of microfungi were isolated from 6 sandy soil samples collected from Teluk Aling beach, Pulau Pinang. The soil microfungi were isolated by using direct isolation, debris isolation and soil dilution techniques. Based on morphological characteristics, seven genera of microfungi were identified namely, Fusarium (42%), Aspergillus (24%), Trichoderma (13%), Curvularia (9%), Colletotrichum (6%), Helminthosporium (4%) and Penicillium (2%). The most common species isolated was Fusarium solani followed by Fusarium semitecum, Aspergillus niger, Trichoderma viride, Curvularia clavata, Curvularia lunata, Helminthosporium velutinum, Colletotrichum sp. and Penicillium chrysogenum. From the present study, it appears that the sandy beach contains a microfungi reservoir comprising of a variety of genera which contributes significantly to the ecological functioning of a marine ecosystem. PMID:24575210

  2. Investigation of volcanic gas analyses and magma outgassing from Erta' Ale lava lake, Afar, Ethiopia

    NASA Astrophysics Data System (ADS)

    Gerlach, T. M.

    1980-05-01

    The analyses of 18 volcanic gas samples collected over a two-hour period at 1075°C from Erta' Ale lava lake in December 1971 and of 18 samples taken over a half-hour period at 1125-1135°C in 1974 display moderately to intensely variable compositions. These variations result from imposed modifications caused by (1) atmospheric contamination and oxidation, (2) condensation and re-evaporation of water during collection, (3) analytical errors, and (4) chemical reactions between the erupted gases and a steel lead-in tube. Detailed examinations of the analyses indicate the erupted gases were at chemical equilibrium before collection. This condition was partially destroyed by the imposed modifications. High-temperature reaction equilibria were more completely preserved in the 1974 samples. Numerical procedures based on thermodynamic calculations have been used to restore each analysis to a composition representative of the erupted gases. These procedures have also been used to restore the anhydrous mean compositions reported for two series of collections taken at the lava lake in January 1973. The corrected analyses for 1971 and 1973 have similar compositions (69.6-71.3% H 2O, 1.6-2.4% H 2, 17.8-19.4% CO 2, 0.8-1.6% CO, 4.9-8.8% SO 2, 0.2-0.5% S 2, and 0.4-1.0% H 2S); those for 1974 were somewhat different (77.1% H 2O, 1.6% H 2, 11.7% CO 2, 0.5% CO, 7.4% SO 2, 0.3% S 2, 0.9% H 2S and 0.4% HCl). The O 2 and S 2 fugacities of all restored analyses are similar when compared at the same temperatures. O 2 fugacities are close to those of the quartz-magnetite-fayalite buffer. The restored analyses show no evidence of significant short-term (minutes, hours) variations in the compositions of the gases released from the lava lake, and evidence of long-term variations is limited. The restored analyses indicate the O 2 and S 2 potentials of the lava lake remained nearly constant from 1971 to 1974. However, there is a relative decrease in CO 2 between the 1973 and 1974 corrected

  3. ALE meta-analysis reveals dissociable networks for affective and discriminative aspects of touch.

    PubMed

    Morrison, India

    2016-04-01

    Emotionally-laden tactile stimulation-such as a caress on the skin or the feel of velvet-may represent a functionally distinct domain of touch, underpinned by specific cortical pathways. In order to determine whether, and to what extent, cortical functional neuroanatomy supports a distinction between affective and discriminative touch, an activation likelihood estimate (ALE) meta-analysis was performed. This meta-analysis statistically mapped reported functional magnetic resonance imaging (fMRI) activations from 17 published affective touch studies in which tactile stimulation was associated with positive subjective evaluation (n = 291, 34 experimental contrasts). A separate ALE meta-analysis mapped regions most likely to be activated by tactile stimulation during detection and discrimination tasks (n = 1,075, 91 experimental contrasts). These meta-analyses revealed dissociable regions for affective and discriminative touch, with posterior insula (PI) more likely to be activated for affective touch, and primary somatosensory cortices (SI) more likely to be activated for discriminative touch. Secondary somatosensory cortex had a high likelihood of engagement by both affective and discriminative touch. Further, meta-analytic connectivity (MCAM) analyses investigated network-level co-activation likelihoods independent of task or stimulus, across a range of domains and paradigms. Affective-related PI and discriminative-related SI regions co-activated with different networks, implicated in dissociable functions, but sharing somatosensory co-activations. Taken together, these meta-analytic findings suggest that affective and discriminative touch are dissociable both on the regional and network levels. However, their degree of shared activation likelihood in somatosensory cortices indicates that this dissociation reflects functional biases within tactile processing networks, rather than functionally and anatomically distinct pathways. PMID:26873519

  4. Numerical simulations of glass impacts using smooth particle hydrodynamics

    SciTech Connect

    Mandell, D.A.; Wingate, C.A.

    1996-05-01

    As part of a program to develop advanced hydrocode design tools, we have implemented a brittle fracture model for glass into the SPHINX smooth particle hydrodynamics code. We have evaluated this model and the code by predicting data from one-dimensional flyer plate impacts into glass. Since fractured glass properties, which are needed in the model, are not available, we did sensitivity studies of these properties, as well as sensitivity studies to determine the number of particles needed in the calculations. The numerical results are in good agreement with the data. {copyright} {ital 1996 American Institute of Physics.}

  5. Numerical simulations of glass impacts using smooth particle hydrodynamics

    SciTech Connect

    Mandell, D.A.; Wingate, C.A.

    1995-07-01

    As part of a program to develop advanced hydrocode design tools, we have implemented a brittle fracture model for glass into the SPHINX smooth particle hydrodynamics code. We have evaluated this model and the code by predicting data from one-dimensional flyer plate impacts into glass. Since fractured glass properties, which are needed in the model, are not available, we did sensitivity studies of these properties, as well as sensitivity studies to determine the number of particles needed in the calculations. The numerical results are in good agreement with the data.

  6. Abnormal pressures as hydrodynamic phenomena

    USGS Publications Warehouse

    Neuzil, C.E.

    1995-01-01

    So-called abnormal pressures, subsurface fluid pressures significantly higher or lower than hydrostatic, have excited speculation about their origin since subsurface exploration first encountered them. Two distinct conceptual models for abnormal pressures have gained currency among earth scientists. The static model sees abnormal pressures generally as relict features preserved by a virtual absence of fluid flow over geologic time. The hydrodynamic model instead envisions abnormal pressures as phenomena in which flow usually plays an important role. This paper develops the theoretical framework for abnormal pressures as hydrodynamic phenomena, shows that it explains the manifold occurrences of abnormal pressures, and examines the implications of this approach. -from Author

  7. Hydrodynamic interactions in protein folding

    NASA Astrophysics Data System (ADS)

    Cieplak, Marek; Niewieczerzał, Szymon

    2009-03-01

    We incorporate hydrodynamic interactions (HIs) in a coarse-grained and structure-based model of proteins by employing the Rotne-Prager hydrodynamic tensor. We study several small proteins and demonstrate that HIs facilitate folding. We also study HIV-1 protease and show that HIs make the flap closing dynamics faster. The HIs are found to affect time correlation functions in the vicinity of the native state even though they have no impact on same time characteristics of the structure fluctuations around the native state.

  8. Hydrodynamic interactions in protein folding.

    PubMed

    Cieplak, Marek; Niewieczerzał, Szymon

    2009-03-28

    We incorporate hydrodynamic interactions (HIs) in a coarse-grained and structure-based model of proteins by employing the Rotne-Prager hydrodynamic tensor. We study several small proteins and demonstrate that HIs facilitate folding. We also study HIV-1 protease and show that HIs make the flap closing dynamics faster. The HIs are found to affect time correlation functions in the vicinity of the native state even though they have no impact on same time characteristics of the structure fluctuations around the native state. PMID:19334888

  9. Isogeometric analysis of Lagrangian hydrodynamics

    NASA Astrophysics Data System (ADS)

    Bazilevs, Y.; Akkerman, I.; Benson, D. J.; Scovazzi, G.; Shashkov, M. J.

    2013-06-01

    Isogeometric analysis of Lagrangian shock hydrodynamics is proposed. The Euler equations of compressible hydrodynamics in the weak form are discretized using Non-Uniform Rational B-Splines (NURBS) in space. The discretization has all the advantages of a higher-order method, with the additional benefits of exact symmetry preservation and better per-degree-of-freedom accuracy. An explicit, second-order accurate time integration procedure, which conserves total energy, is developed and employed to advance the equations in time. The performance of the method is examined on a set of standard 2D and 3D benchmark examples, where good quality of the computational results is attained.

  10. Sulfur degassing at Erta Ale (Ethiopia) and Masaya (Nicaragua) volcanoes: Implications for degassing processes and oxygen fugacities of basaltic systems

    NASA Astrophysics Data System (ADS)

    Moor, J. M.; Fischer, T. P.; Sharp, Z. D.; King, P. L.; Wilke, M.; Botcharnikov, R. E.; Cottrell, E.; Zelenski, M.; Marty, B.; Klimm, K.; Rivard, C.; Ayalew, D.; Ramirez, C.; Kelley, K. A.

    2013-10-01

    We investigate the relationship between sulfur and oxygen fugacity at Erta Ale and Masaya volcanoes. Oxygen fugacity was assessed utilizing Fe3+/∑Fe and major element compositions measured in olivine-hosted melt inclusions and matrix glasses. Erta Ale melts have Fe3+/∑Fe of 0.15-0.16, reflecting fO2 of ΔQFM 0.0 ± 0.3, which is indistinguishable from fO2 calculated from CO2/CO ratios in high-temperature gases. Masaya is more oxidized at ΔQFM +1.7 ± 0.4, typical of arc settings. Sulfur isotope compositions of gases and scoria at Erta Ale (δ34Sgas - 0.5‰; δ34Sscoria + 0.9‰) and Masaya (δ34Sgas + 4.8‰; δ34Sscoria + 7.4‰) reflect distinct sulfur sources, as well as isotopic fractionation during degassing (equilibrium and kinetic fractionation effects). Sulfur speciation in melts plays an important role in isotope fractionation during degassing and S6+/∑S is <0.07 in Erta Ale melt inclusions compared to >0.67 in Masaya melt inclusions. No change is observed in Fe3+/∑Fe or S6+/∑S with extent of S degassing at Erta Ale, indicating negligible effect on fO2, and further suggesting that H2S is the dominant gas species exsolved from the S2--rich melt (i.e., no redistribution of electrons). High SO2/H2S observed in Erta Ale gas emissions is due to gas re-equilibration at low pressure and fixed fO2. Sulfur budget considerations indicate that the majority of S injected into the systems is emitted as gas, which is therefore representative of the magmatic S isotope composition. The composition of the Masaya gas plume (+4.8‰) cannot be explained by fractionation effects but rather reflects recycling of high δ34S oxidized sulfur through the subduction zone.

  11. Hydrodynamic slip in silicon nanochannels

    NASA Astrophysics Data System (ADS)

    Ramos-Alvarado, Bladimir; Kumar, Satish; Peterson, G. P.

    2016-03-01

    Equilibrium and nonequilibrium molecular dynamics simulations were performed to better understand the hydrodynamic behavior of water flowing through silicon nanochannels. The water-silicon interaction potential was calibrated by means of size-independent molecular dynamics simulations of silicon wettability. The wettability of silicon was found to be dependent on the strength of the water-silicon interaction and the structure of the underlying surface. As a result, the anisotropy was found to be an important factor in the wettability of these types of crystalline solids. Using this premise as a fundamental starting point, the hydrodynamic slip in nanoconfined water was characterized using both equilibrium and nonequilibrium calculations of the slip length under low shear rate operating conditions. As was the case for the wettability analysis, the hydrodynamic slip was found to be dependent on the wetted solid surface atomic structure. Additionally, the interfacial water liquid structure was the most significant parameter to describe the hydrodynamic boundary condition. The calibration of the water-silicon interaction potential performed by matching the experimental contact angle of silicon led to the verification of the no-slip condition, experimentally reported for silicon nanochannels at low shear rates.

  12. Meat Products, Hydrodynamic Pressure Processing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The hydrodynamic pressure process (HDP) has been shown to be very effective at improving meat tenderness in a variety of meat cuts. When compared to conventional aging for tenderization, HDP was more effective. The HDP process may offer the meat industry a new alternative for tenderizing meat in add...

  13. Google Earth as a tool in 2-D hydrodynamic modeling

    NASA Astrophysics Data System (ADS)

    Chien, Nguyen Quang; Keat Tan, Soon

    2011-01-01

    A method for coupling virtual globes with geophysical hydrodynamic models is presented. Virtual globes such as Google TM Earth can be used as a visualization tool to help users create and enter input data. The authors discuss techniques for representing linear and areal geographical objects with KML (Keyhole Markup Language) files generated using computer codes (scripts). Although virtual globes offer very limited tools for data input, some data of categorical or vector type can be entered by users, and then transformed into inputs for the hydrodynamic program by using appropriate scripts. An application with the AnuGA hydrodynamic model was used as an illustration of the method. Firstly, users draw polygons on the Google Earth screen. These features are then saved in a KML file which is read using a script file written in the Lua programming language. After the hydrodynamic simulation has been performed, another script file is used to convert the resulting output text file to a KML file for visualization, where the depths of inundation are represented by the color of discrete point icons. The visualization of a wind speed vector field was also included as a supplementary example.

  14. Hydrodynamic analysis of time series

    NASA Astrophysics Data System (ADS)

    Suciu, N.; Vamos, C.; Vereecken, H.; Vanderborght, J.

    2003-04-01

    It was proved that balance equations for systems with corpuscular structure can be derived if a kinematic description by piece-wise analytic functions is available [1]. For example, the hydrodynamic equations for one-dimensional systems of inelastic particles, derived in [2], were used to prove the inconsistency of the Fourier law of heat with the microscopic structure of the system. The hydrodynamic description is also possible for single particle systems. In this case, averages of physical quantities associated with the particle, over a space-time window, generalizing the usual ``moving averages'' which are performed on time intervals only, were shown to be almost everywhere continuous space-time functions. Moreover, they obey balance partial differential equations (continuity equation for the 'concentration', Navier-Stokes equation, a. s. o.) [3]. Time series can be interpreted as trajectories in the space of the recorded parameter. Their hydrodynamic interpretation is expected to enable deterministic predictions, when closure relations can be obtained for the balance equations. For the time being, a first result is the estimation of the probability density for the occurrence of a given parameter value, by the normalized concentration field from the hydrodynamic description. The method is illustrated by hydrodynamic analysis of three types of time series: white noise, stock prices from financial markets and groundwater levels recorded at Krauthausen experimental field of Forschungszentrum Jülich (Germany). [1] C. Vamoş, A. Georgescu, N. Suciu, I. Turcu, Physica A 227, 81-92, 1996. [2] C. Vamoş, N. Suciu, A. Georgescu, Phys. Rev E 55, 5, 6277-6280, 1997. [3] C. Vamoş, N. Suciu, W. Blaj, Physica A, 287, 461-467, 2000.

  15. Design and analysis of ALE schemes with provable second-order time-accuracy for inviscid and viscous flow simulations

    NASA Astrophysics Data System (ADS)

    Geuzaine, Philippe; Grandmont, Céline; Farhat, Charbel

    2003-10-01

    We consider the solution of inviscid as well as viscous unsteady flow problems with moving boundaries by the arbitrary Lagrangian-Eulerian (ALE) method. We present two computational approaches for achieving formal second-order time-accuracy on moving grids. The first approach is based on flux time-averaging, and the second one on mesh configuration time-averaging. In both cases, we prove that formally second-order time-accurate ALE schemes can be designed. We illustrate our theoretical findings and highlight their impact on practice with the solution of inviscid as well as viscous, unsteady, nonlinear flow problems associated with the AGARD Wing 445.6 and a complete F-16 configuration.

  16. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment for LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-05-23

    Fast cookoff is of interest in the areas of fire hazard reduction and the development of directed energy systems for defense. During a fast cookoff (thermal explosion), high heat fluxes cause rapid temperature increases and ignition in thin boundary layers. We are developing ALE3D models to describe the thermal, chemical, and mechanical behavior during the heating, ignition, and explosive phases. The candidate models and numerical strategies are being evaluated using benchmark cookoff experiments. Fast cookoff measurements were made in a Scaled-Thermal-Explosion-eXperiment (STEX) for LX-10 (94.7% HMX, 5.3% Viton A) confined in a 4130 steel tube with reinforced end caps. Gaps were present at the side and top of the explosive charge to allow for thermal expansion. The explosive was heated until explosion using radiant heaters. Temperatures were measured using thermocouples positioned on the tube wall and in the explosive. During the explosion, the tube expansion and fragment velocities were measured with strain gauges, Photonic-Doppler-Velocimeters (PDVs), and micropower radar units. A fragment size distribution was constructed from fragments captured in Lexan panels. ALE3D models for chemical, thermal, and mechanical behavior were developed for the heating and explosive processes. A multi-step chemical kinetics model is employed for the HMX while a one-step model is used for the Viton. A pressure-dependent deflagration model is employed during the expansion. A Steinberg-Guinan model represents the mechanical behavior of the solid constituents while polynomial and gamma-law expressions are used for the equation of state of the solid and gas species, respectively. Parameters for the kinetics model were specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate were employed to determine parameters in the burn front model. The simulations include radiative and conductive transport across the dynamic gaps between the

  17. Erta Ale Lava Lake: Identification and Modelling of Variable Convective Regimes

    NASA Astrophysics Data System (ADS)

    Carniel, R.; Harris, A. J.; Jones, J.

    2002-12-01

    After more than twenty years without access to Erta Ale volcano, field campaigns are once again feasible. Between February 15 and February 20, 2002, a combined thermal and seismic data set was recorded at Erta Ale volcano, Ethiopia, to study activity of the persistent lava lake. Analysis of continuous tremor and thermal fluctuations suggests that lava lake activity, as recorded by temperature variations, is related to seismic energy and spectral content. When we compare these parameters at timescales of minutes to hours, we find that correlations range from good to poor. However, these two parameters do not significantly correlate on timescales of a full day. Both thermal and seismic data indicate that the lava lake exhibits cyclical behavior between 20 to 80 minute periods characterized by low (~0.05 ms-1) and high (~0.2 ms-1) rates of convection, respectively. We use our measurements to constrain two models to explain these convection cycles. The first model relates variable convection rates to pulses in the rate at which magma is supplied to the lake. This model requires supply rates to cycle between high convection rate phases fed by a magma volume flux of 0.2 m3s-1 and low convection rate phases fed by a magma volume flux of 0.03 m3s-1. The second model assumes that supply to the lake is steady and that cyclic convection is set up by the generation of convective instabilities within the lake. In this case, cooling of the surface layer generates a slow moving, viscous convection cell at the lake surface overlying a faster moving convection cell of lower viscosity. Recharge of the lower cell increases the buoyancy of the lower layer, and eventually triggers an overturn event. At this point the surface of the low viscosity cell extends to the lake surface and the high viscosity cell sinks to be drained from the lake. We find that the second model, whereby cyclic convection is generated by processes acting within the lake, is more plausible.

  18. Impact of a grout curtain on groundwater regime in karst: the example of the Ðale reservoir (Croatia)

    NASA Astrophysics Data System (ADS)

    Bonacci, Ognjen; Roje-Bonacci, Tanja

    2010-05-01

    Construction of grout curtains in karst terrains is primarily connected with dams and reservoirs. Their role is to increase watertightness and prevent progressive erosion. In this presentation hourly continuous measurement of groundwater level in two deep piezometers near the Đale reservoir is analysed. The Đale reservoir in the Cetina River began operation in 1989. The total length of the grout curtain is 3.9 km. It spreads 120 m bellow the Đale dam. First analysed piezometer A is drilled in the interior part of the system, between the reservoir and the grout curtain, while the second one B is located in its external part. Distance between them is 200 m. In natural conditions, prior the grout curtain construction, groundwater level fluctuation in both of them was similar (practically the same). Construction of the grout curtain extremely changed groundwater behaviour in each of them. During the six month of continuous monitoring, differences between groundwater levels in them range between +19.86 m (groundwater in B is lower than in A) and -12.77 m (groundwater in A is lower than in B). During the 77% of analysed period the groundwater level in interior piezometer A is higher than the groundwater level in external piezometer B. In other 23% of analysed period the groundwater level in outside piezometer B is higher than in inside A. The construction of the grout curtain caused unnaturally high hydrostatic gradients, which can accelerate the dissolutional expansion of karst fractures. As a result, unbearable leakage of the reservoir Đale can occur over its lifetime. Careful analyses of groundwater level behaviour discover some other very important characteristics of karst underground morphology.

  19. γ^2 Velorum: combining interferometric observations with hydrodynamic simulations

    NASA Astrophysics Data System (ADS)

    Lamberts, A.; Millour, F.

    2015-12-01

    Colliding stellar winds in massive binary systems have been studied through their radio and strong X-ray emission for decades. More recently, spectro-interferometric observations in the near infrared have become available for certain binaries, but identifying the different contributions to the emission remains a challenge. Multidimensional hydrodynamic simulations reveal a complex double shocked structure and can guide the analysis of observational data. In this work, we analyse the wind collision region in the WR+O binary, γ^2 Velorum. We combine multi-epoch AMBER observations with mock data obtained with hydrodynamic simulations with the RAMSES code. We assess the contributions of the wind collision region in order to constrain the wind structure of both stars.

  20. New Equation of State Models for Hydrodynamic Applications

    NASA Astrophysics Data System (ADS)

    Young, David A.; Barbee, Troy W., III; Rogers, Forrest J.

    1997-07-01

    Accurate models of the equation of state of matter at high pressures and temperatures are increasingly required for hydrodynamic simulations. We have developed two new approaches to accurate EOS modeling: 1) ab initio phonons from electron band structure theory for condensed matter and 2) the ACTEX dense plasma model for ultrahigh pressure shocks. We have studied the diamond and high pressure phases of carbon with the ab initio model and find good agreement between theory and experiment for shock Hugoniots, isotherms, and isobars. The theory also predicts a comprehensive phase diagram for carbon. For ultrahigh pressure shock states, we have studied the comparison of ACTEX theory with experiments for deuterium, beryllium, polystyrene, water, aluminum, and silicon dioxide. The agreement is good, showing that complex multispecies plasmas are treated adequately by the theory. These models will be useful in improving the numerical EOS tables used by hydrodynamic codes.

  1. Development and Implementation of Radiation-Hydrodynamics Verification Test Problems

    SciTech Connect

    Marcath, Matthew J.; Wang, Matthew Y.; Ramsey, Scott D.

    2012-08-22

    Analytic solutions to the radiation-hydrodynamic equations are useful for verifying any large-scale numerical simulation software that solves the same set of equations. The one-dimensional, spherically symmetric Coggeshall No.9 and No.11 analytic solutions, cell-averaged over a uniform-grid have been developed to analyze the corresponding solutions from the Los Alamos National Laboratory Eulerian Applications Project radiation-hydrodynamics code xRAGE. These Coggeshall solutions have been shown to be independent of heat conduction, providing a unique opportunity for comparison with xRAGE solutions with and without the heat conduction module. Solution convergence was analyzed based on radial step size. Since no shocks are involved in either problem and the solutions are smooth, second-order convergence was expected for both cases. The global L1 errors were used to estimate the convergence rates with and without the heat conduction module implemented.

  2. Hydrodynamic Simulations of Close and Contact Binary Systems using Bipolytropes

    NASA Astrophysics Data System (ADS)

    Kadam, Kundan

    2016-01-01

    I will present the results of hydrodynamic simulations of close and contact bipolytropic binary systems. This project is motivated by the peculiar case of the red nova, V1309 Sco, which is indeed a merger of a contact binary. Both the stars are believed to have evolved off the main sequence by the time of the merger and possess a small helium core. In order to represent the binary accurately, I need a core-envelope structure for both the stars. I have achieved this using bipolytropes or composite polytropes. For the simulations, I use an explicit 3D Eulerian hydrodynamics code in cylindrical coordinates. I will discuss the evolution and merger scenarios of systems with different mass ratios and core mass fractions as well as the effects due to the treatment of the adiabatic exponent.

  3. Hydrodynamic Simulations of Shell Convection in Stellar Cores

    NASA Astrophysics Data System (ADS)

    Mocák, Miroslav; Müller, Ewald; Siess, Lionel

    Shell convection driven by nuclear burning in a stellar core is a common hydrodynamic event in the evolution of many types of stars. We encounter and simulate this convection (1) in the helium core of a low-mass red giant during core helium flash leading to a dredge-down of protons across an entropy barrier, (2) in a carbon-oxygen core of an intermediate-mass star during core carbon flash, and (3) in the oxygen and carbon burning shell above the silicon-sulfur rich core of a massive star prior to supernova explosion. Our results, which were obtained with the hydrodynamics code HERAKLES, suggest that both entropy gradients and entropy barriers are less important for stellar structure than commonly assumed. Our simulations further reveal a new dynamic mixing process operating below the base of shell convection zones.

  4. Hydrodynamic effects in the atmosphere of variable stars

    NASA Technical Reports Server (NTRS)

    Davis, C. G., Jr.; Bunker, S. S.

    1975-01-01

    Numerical models of variable stars are established, using a nonlinear radiative transfer coupled hydrodynamics code. The variable Eddington method of radiative transfer is used. Comparisons are for models of W Virginis, beta Doradus, and eta Aquilae. From these models it appears that shocks are formed in the atmospheres of classical Cepheids as well as W Virginis stars. In classical Cepheids, with periods from 7 to 10 days, the bumps occurring in the light and velocity curves appear as the result of a compression wave that reflects from the star's center. At the head of the outward going compression wave, shocks form in the atmosphere. Comparisons between the hydrodynamic motions in W Virginis and classical Cepheids are made. The strong shocks in W Virginis do not penetrate into the interior as do the compression waves formed in classical Cepheids. The shocks formed in W Virginis stars cause emission lines, while in classical Cepheids the shocks are weaker.

  5. A hybrid formalism combining fluctuating hydrodynamics and generalized Langevin dynamics for the simulation of nanoparticle thermal motion in an incompressible fluid medium

    PubMed Central

    Uma, B.; Eckmann, D.M.; Ayyaswamy, P.S.; Radhakrishnan, R.

    2012-01-01

    A novel hybrid scheme based on Markovian fluctuating hydrodynamics of the fluid and a non-Markovian Langevin dynamics with the Ornstein-Uhlenbeck noise perturbing the translational and rotational equations of motion of the nanoparticle is employed to study the thermal motion of a nanoparticle in an incompressible Newtonian fluid medium. A direct numerical simulation adopting an arbitrary Lagrangian-Eulerian (ALE) based finite element method (FEM) is employed in simulating the thermal motion of a particle suspended in the fluid confined in a cylindrical vessel. The results for thermal equilibrium between the particle and the fluid are validated by comparing the numerically predicted temperature of the nanoparticle with that obtained from the equipartition theorem. The nature of the hydrodynamic interactions is verified by comparing the velocity autocorrelation function (VACF) and mean squared displacement (MSD) with well-known analytical results. For nanoparticle motion in an incompressible fluid, the fluctuating hydrodynamics approach resolves the hydrodynamics correctly but does not impose the correct equipartition of energy based on the nanoparticle mass because of the added mass of the displaced fluid. In contrast, the Langevin approach with an appropriate memory is able to show the correct equipartition of energy, but not the correct short- and long-time hydrodynamic correlations. Using our hybrid approach presented here, we show for the first time, that we can simultaneously satisfy the equipartition theorem and the (short- and long-time) hydrodynamic correlations. In effect, this results in a thermostat that also simultaneously preserves the true hydrodynamic correlations. The significance of this result is that our new algorithm provides a robust computational approach to explore nanoparticle motion in arbitrary geometries and flow fields, while simultaneously enabling us to study carrier adhesion mediated by biological reactions (receptor

  6. Natural hazards in the karst areas of the Viñales National Park, Cuba

    NASA Astrophysics Data System (ADS)

    Govea Blanco, Darlenys; Farfan Gonzalez, Hermes; Dias Guanche, Carlos; Parise, Mario; Ramirez, Robert

    2010-05-01

    Cuban karst is subject to several natural hazards, the great majority of which is hydro-meteorological in character: intense rainstorms, tropical cyclones, seawater inundation, etc. A further, serious problem is represented by droughts, that have become very severe during the recent years, due to longer persistence of the dry season. Beside these hazards, seismic shocks in the eastern part of the country, and mass movements in the mountain areas have also to be mentioned. In general, it has to be noted that both casualties and economic losses from natural disasters have slowly decreased during the last decades at Cuba. Viñales National Park, as many other natural landforms in the Cuban karst, has a great potential for development and exploitation in several different fields, from agriculture, to tourism and recreational activities. At these aims, it is necessary to preserve the natural landscape, its beauty and resources, and, at the same time, improve the quality of people living in these environments. In particular, to face the social changes at present occurring in the area is one of the most difficult task for those people that are in charge of land management and development. It has also to be remembered that "Valle de Viñales" has been included by UNESCO in the World Cultural Heritage List. The main scenarios of natural hazards in the Viñales National Park are described in this contribution, and analyzed by means of different methodologies. Flooded areas have been mapped in the field soon after the occurrence of an extreme event as the hurricane Ike, characterized by rainfall higher than 300 mm/day, and preceded only ten days before by hurricane Gustav, that discharged in the area an amount of 120 mm/day of rain. As a consequence of the temporal vicinity of the two events, the terranes were already highly saturated at the time of occurrence of hurricane Ike, which thus resulted to be one of the most extreme floods ever recorded in the area. Electrostatic

  7. Brewhouse-Resident Microbiota Are Responsible for Multi-Stage Fermentation of American Coolship Ale

    PubMed Central

    Bokulich, Nicholas A.; Bamforth, Charles W.; Mills, David A.

    2012-01-01

    American coolship ale (ACA) is a type of spontaneously fermented beer that employs production methods similar to traditional Belgian lambic. In spite of its growing popularity in the American craft-brewing sector, the fermentation microbiology of ACA has not been previously described, and thus the interface between production methodology and microbial community structure is unexplored. Using terminal restriction fragment length polymorphism (TRFLP), barcoded amplicon sequencing (BAS), quantitative PCR (qPCR) and culture-dependent analysis, ACA fermentations were shown to follow a consistent fermentation progression, initially dominated by Enterobacteriaceae and a range of oxidative yeasts in the first month, then ceding to Saccharomyces spp. and Lactobacillales for the following year. After one year of fermentation, Brettanomyces bruxellensis was the dominant yeast population (occasionally accompanied by minor populations of Candida spp., Pichia spp., and other yeasts) and Lactobacillales remained dominant, though various aerobic bacteria became more prevalent. This work demonstrates that ACA exhibits a conserved core microbial succession in absence of inoculation, supporting the role of a resident brewhouse microbiota. These findings establish this core microbial profile of spontaneous beer fermentations as a target for production control points and quality standards for these beers. PMID:22530036

  8. Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale.

    PubMed

    Bokulich, Nicholas A; Bamforth, Charles W; Mills, David A

    2012-01-01

    American coolship ale (ACA) is a type of spontaneously fermented beer that employs production methods similar to traditional Belgian lambic. In spite of its growing popularity in the American craft-brewing sector, the fermentation microbiology of ACA has not been previously described, and thus the interface between production methodology and microbial community structure is unexplored. Using terminal restriction fragment length polymorphism (TRFLP), barcoded amplicon sequencing (BAS), quantitative PCR (qPCR) and culture-dependent analysis, ACA fermentations were shown to follow a consistent fermentation progression, initially dominated by Enterobacteriaceae and a range of oxidative yeasts in the first month, then ceding to Saccharomyces spp. and Lactobacillales for the following year. After one year of fermentation, Brettanomyces bruxellensis was the dominant yeast population (occasionally accompanied by minor populations of Candida spp., Pichia spp., and other yeasts) and Lactobacillales remained dominant, though various aerobic bacteria became more prevalent. This work demonstrates that ACA exhibits a conserved core microbial succession in absence of inoculation, supporting the role of a resident brewhouse microbiota. These findings establish this core microbial profile of spontaneous beer fermentations as a target for production control points and quality standards for these beers. PMID:22530036

  9. The neural basis of audiomotor entrainment: an ALE meta-analysis

    PubMed Central

    Chauvigné, Léa A. S.; Gitau, Kevin M.; Brown, Steven

    2014-01-01

    Synchronization of body movement to an acoustic rhythm is a major form of entrainment, such as occurs in dance. This is exemplified in experimental studies of finger tapping. Entrainment to a beat is contrasted with movement that is internally driven and is therefore self-paced. In order to examine brain areas important for entrainment to an acoustic beat, we meta-analyzed the functional neuroimaging literature on finger tapping (43 studies) using activation likelihood estimation (ALE) meta-analysis with a focus on the contrast between externally-paced and self-paced tapping. The results demonstrated a dissociation between two subcortical systems involved in timing, namely the cerebellum and the basal ganglia. Externally-paced tapping highlighted the importance of the spinocerebellum, most especially the vermis, which was not activated at all by self-paced tapping. In contrast, the basal ganglia, including the putamen and globus pallidus, were active during both types of tapping, but preferentially during self-paced tapping. These results suggest a central role for the spinocerebellum in audiomotor entrainment. We conclude with a theoretical discussion about the various forms of entrainment in humans and other animals. PMID:25324765

  10. Sulfur, heat, and magma budget of Erta ‘Ale lava lake, Ethiopia

    NASA Astrophysics Data System (ADS)

    Oppenheimer, C.; McGonigle, A. J. S.; Allard, P.; Wooster, M. J.; Tsanev, V.

    2004-06-01

    We report here the first measurements of the SO2 flux from Erta ‘Ale volcano (Ethiopia); the measurements were obtained in March 2003 with a portable ultraviolet spectrometer. Emission rates averaged 0.7 kg·s-1 from the active lava lake and 1.3 kg·s-1 from the whole volcano (including fumarolic emissions in the north part of the caldera). This modest output combined with an estimate of the melt sulfur content indicates a magma-supply rate of 350 650 kg·s-1 (˜0.13 0.25 m3·s-1). Radiant heat power from the lava lake, measured by infrared thermography, was found to vary between ˜5 and 30 MW according to activity of the lake surface and time elapsed since resurfacing events. We show that 8% 14% crystallization and/or 30 60 °C cooling of the upwelling magma reaching the lake, as well as degassing, are sufficient to increase magma density in the upper conduit and drive convection between the surface and a feeding reservoir. Fluctuations in the system, such as degree of vesiculation and magma supply rate, can be buffered by ascent or descent of the magma level within a flared vent region whose geometry directly controls lake surface area and hence heat loss.

  11. Lava lake surface characterization by thermal imaging: Erta 'Ale volcano (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Spampinato, L.; Oppenheimer, C.; Calvari, S.; Cannata, A.; Montalto, P.

    2008-12-01

    Active lava lakes represent the exposed, uppermost part of convecting magma systems and provide windows into the dynamics of magma transport and degassing. Erta 'Ale volcano located within the Danakil Depression in Ethiopia hosts one of the few permanent convecting lava lakes, probably active for a century or more. We report here on the main features of the lava lake surface based on observations from an infrared thermal camera made on 11 November 2006. Efficient magma circulation was reflected in the sustained transport of the surface, which was composed of pronounced incandescent cracks that separated wide plates of cooler crust. These crossed the lake from the upwelling to the downwelling margin with mean speeds ranging between 0.01 and 0.15 m s-1. Hot spots eventually opened in the middle of crust plates and/or along cracks. These produced mild explosive activity lasting commonly between ˜10 and ˜200 s. Apparent temperatures of cracks ranged between ˜700 and 1070°C, and of crust between ˜300 and 500°C. Radiant power output of the lake varied between ˜45 and 76 MW according to the superficial activity and continuous resurfacing of the lake. Time series analysis of the radiant power output data reveals cyclicity with a period of ˜10 min. The combination of visual and thermal observations with apparent mean temperatures and convection rates allows us to interpret these signals as the periodic release of hot overpressured gas bubbles at the lake surface.

  12. Prospects for utilization of air liquefaction and enrichment system (ALES) propulsion in fully reusable launch vehicles

    NASA Technical Reports Server (NTRS)

    Bond, W. H.; Yi, A. C.

    1993-01-01

    A concept is shown for a fully reusable, earth to orbit launch vehicle with horizontal takeoff and landing, employing an air-turborocket for low speed and a rocket for high speed acceleration, both using LH2 fuel. The turborocket employs a modified liquid air cycle to supply the oxidizer. The rocket uses 90 percent pure LOX that is collected from the atmosphere, separated, and stored during operation of the turborocket from about Mach 2 to Mach 5 or 6. The takeoff weight and the thrust required at takeoff are markedly reduced by collecting the rocket oxidizer in-flight. The paper shows an approach and the corresponding technology needs for using ALES propulsion in a SSTO vehicle. Reducing the trajectory altitude at the end of collection reduces the wing area and increases payload. The use of state-of-the-art materials, such as graphite polyimide, is critical to meet the structure weight objective for SSTO. Configurations that utilize 'waverider' aerodynamics show great promise to reduce the vehicle weight.

  13. Hydrodynamic interactions between rotating helices.

    PubMed

    Kim, MunJu; Powers, Thomas R

    2004-06-01

    Escherichia coli bacteria use rotating helical flagella to swim. At this scale, viscous effects dominate inertia, and there are significant hydrodynamic interactions between nearby helices. These interactions cause the flagella to bundle during the "runs" of bacterial chemotaxis. Here we use slender-body theory to solve for the flow fields generated by rigid helices rotated by stationary motors. We determine how the hydrodynamic forces and torques depend on phase and phase difference, show that rigid helices driven at constant torque do not synchronize, and solve for the flows. We also use symmetry arguments based on kinematic reversibility to show that for two rigid helices rotating with zero phase difference, there is no time-averaged attractive or repulsive force between the helices. PMID:15244620

  14. Hydrodynamic damage to animal cells.

    PubMed

    Chisti, Y

    2001-01-01

    Animal cells are affected by hydrodynamic forces that occur in culture vessel, transfer piping, and recovery operations such as microfiltration. Depending on the type, intensity, and duration of the force, and the specifics of the cell, the force may induce various kinds of responses in the subject cells. Both biochemical and physiological responses are observed, including apoptosis and purely mechanical destruction of the cell. This review examines the kinds of hydrodynamic forces encountered in bioprocessing equipment and the impact of those forces on cells. Methods are given for quantifying the magnitude of the specific forces, and the response thresholds are noted for the common types of cells cultured in free suspension, supported on microcarriers, and anchored to stationary surfaces. PMID:11451047

  15. Brain vascular and hydrodynamic physiology

    PubMed Central

    Tasker, Robert C.

    2013-01-01

    Protecting the brain in vulnerable infants undergoing surgery is a central aspect of perioperative care. Understanding the link between blood flow, oxygen delivery and oxygen consumption leads to a more informed approach to bedside care. In some cases, we need to consider how high can we let the partial pressure of carbon dioxide go before we have concerns about risk of increased cerebral blood volume and change in intracranial hydrodynamics? Alternatively, in almost all such cases, we have to address the question of how low can we let the blood pressure drop before we should be concerned about brain perfusion? This review, provides a basic understanding of brain bioenergetics, hemodynamics, hydrodynamics, autoregulation and vascular homeostasis to changes in blood gases that is fundamental to our thinking about bedside care and monitoring. PMID:24331089

  16. Generic Conditions for Hydrodynamic Synchronization

    NASA Astrophysics Data System (ADS)

    Uchida, Nariya; Golestanian, Ramin

    2011-02-01

    Synchronization of actively oscillating organelles such as cilia and flagella facilitates self-propulsion of cells and pumping fluid in low Reynolds number environments. To understand the key mechanism behind synchronization induced by hydrodynamic interaction, we study a model of rigid-body rotors making fixed trajectories of arbitrary shape under driving forces that are arbitrary functions of the phase. For a wide class of geometries, we obtain the necessary and sufficient conditions for synchronization of a pair of rotors. We also find a novel synchronized pattern with an oscillating phase shift. Our results shed light on the role of hydrodynamic interactions in biological systems, and could help in developing efficient mixing and transport strategies in microfluidic devices.

  17. Algorithm refinement for fluctuating hydrodynamics

    SciTech Connect

    Williams, Sarah A.; Bell, John B.; Garcia, Alejandro L.

    2007-07-03

    This paper introduces an adaptive mesh and algorithmrefinement method for fluctuating hydrodynamics. This particle-continuumhybrid simulates the dynamics of a compressible fluid with thermalfluctuations. The particle algorithm is direct simulation Monte Carlo(DSMC), a molecular-level scheme based on the Boltzmann equation. Thecontinuum algorithm is based on the Landau-Lifshitz Navier-Stokes (LLNS)equations, which incorporate thermal fluctuations into macroscopichydrodynamics by using stochastic fluxes. It uses a recently-developedsolver for LLNS, based on third-order Runge-Kutta. We present numericaltests of systems in and out of equilibrium, including time-dependentsystems, and demonstrate dynamic adaptive refinement by the computationof a moving shock wave. Mean system behavior and second moment statisticsof our simulations match theoretical values and benchmarks well. We findthat particular attention should be paid to the spectrum of the flux atthe interface between the particle and continuum methods, specificallyfor the non-hydrodynamic (kinetic) time scales.

  18. Microscopic derivation of discrete hydrodynamics.

    PubMed

    Español, Pep; Anero, Jesús G; Zúñiga, Ignacio

    2009-12-28

    By using the standard theory of coarse graining based on Zwanzig's projection operator, we derive the dynamic equations for discrete hydrodynamic variables. These hydrodynamic variables are defined in terms of the Delaunay triangulation. The resulting microscopically derived equations can be understood, a posteriori, as a discretization on an arbitrary irregular grid of the Navier-Stokes equations. The microscopic derivation provides a set of discrete equations that exactly conserves mass, momentum, and energy and the dissipative part of the dynamics produces strict entropy increase. In addition, the microscopic derivation provides a practical implementation of thermal fluctuations in a way that the fluctuation-dissipation theorem is satisfied exactly. This paper points toward a close connection between coarse-graining procedures from microscopic dynamics and discretization schemes for partial differential equations. PMID:20059064

  19. Hydrodynamic modelling of small upland lakes under strong wind forcing

    NASA Astrophysics Data System (ADS)

    Morales, L.; French, J.; Burningham, H.

    2012-04-01

    Small lakes (Area < 1 km2) represent 46.3% of the total lake surface globally and constitute an important source of water supply. Lakes also provide an important sedimentary archive of environmental and climate changes and ecosystem function. Hydrodynamic controls on the transport and distribution of lake sediments, and also seasonal variations in thermal structure due to solar radiation, precipitation, evaporation and mixing and the complex vertical and horizontal circulation patterns induced by the action of wind are not very well understood. The work presented here analyses hydrodynamic motions present in small upland lakes due to circulation and internal scale waves, and their linkages with the distribution of bottom sediment accumulation in the lake. For purpose, a 3D hydrodynamic is calibrated and implemented for Llyn Conwy, a small oligotrophic upland lake in North Wales, UK. The model, based around the FVCOM open source community model code, resolves the Navier-Stokes equations using a 3D unstructured mesh and a finite volume scheme. The model is forced by meteorological boundary conditions. Improvements made to the FVCOM code include a new graphical user interface to pre- and post process the model input and results respectively, and a JONSWAT wave model to include the effects of wind-wave induced bottom stresses on lake sediment dynamics. Modelled internal scale waves are validated against summer temperature measurements acquired from a thermistor chain deployed at the deepest part of the lake. Seiche motions were validated using data recorded by high-frequency level sensors around the lake margins, and the velocity field and the circulation patterns were validated using the data recorded by an ADCP and GPS drifters. The model is shown to reproduce the lake hydrodynamics and reveals well-developed seiches at different frequencies superimposed on wind-driven circulation patterns that appear to control the distribution of bottom sediments in this small

  20. Speech coding

    NASA Astrophysics Data System (ADS)

    Gersho, Allen

    1990-05-01

    Recent advances in algorithms and techniques for speech coding now permit high quality voice reproduction at remarkably low bit rates. The advent of powerful single-ship signal processors has made it cost effective to implement these new and sophisticated speech coding algorithms for many important applications in voice communication and storage. Some of the main ideas underlying the algorithms of major interest today are reviewed. The concept of removing redundancy by linear prediction is reviewed, first in the context of predictive quantization or DPCM. Then linear predictive coding, adaptive predictive coding, and vector quantization are discussed. The concepts of excitation coding via analysis-by-synthesis, vector sum excitation codebooks, and adaptive postfiltering are explained. The main idea of vector excitation coding (VXC) or code excited linear prediction (CELP) are presented. Finally low-delay VXC coding and phonetic segmentation for VXC are described.

  1. A hydrodynamics-reaction kinetics coupled model for evaluating bioreactors derived from CFD simulation.

    PubMed

    Wang, Xu; Ding, Jie; Guo, Wan-Qian; Ren, Nan-Qi

    2010-12-01

    Investigating how a bioreactor functions is a necessary precursor for successful reactor design and operation. Traditional methods used to investigate flow-field cannot meet this challenge accurately and economically. Hydrodynamics model can solve this problem, but to understand a bioreactor in sufficient depth, it is often insufficient. In this paper, a coupled hydrodynamics-reaction kinetics model was formulated from computational fluid dynamics (CFD) code to simulate a gas-liquid-solid three-phase biotreatment system for the first time. The hydrodynamics model is used to formulate prediction of the flow field and the reaction kinetics model then portrays the reaction conversion process. The coupled model is verified and used to simulate the behavior of an expanded granular sludge bed (EGSB) reactor for biohydrogen production. The flow patterns were visualized and analyzed. The coupled model also demonstrates a qualitative relationship between hydrodynamics and biohydrogen production. The advantages and limitations of applying this coupled model are discussed. PMID:20727741

  2. A Microfluidic-based Hydrodynamic Trap for Single Particles

    PubMed Central

    Johnson-Chavarria, Eric M.; Tanyeri, Melikhan; Schroeder, Charles M.

    2011-01-01

    The ability to confine and manipulate single particles in free solution is a key enabling technology for fundamental and applied science. Methods for particle trapping based on optical, magnetic, electrokinetic, and acoustic techniques have led to major advancements in physics and biology ranging from the molecular to cellular level. In this article, we introduce a new microfluidic-based technique for particle trapping and manipulation based solely on hydrodynamic fluid flow. Using this method, we demonstrate trapping of micro- and nano-scale particles in aqueous solutions for long time scales. The hydrodynamic trap consists of an integrated microfluidic device with a cross-slot channel geometry where two opposing laminar streams converge, thereby generating a planar extensional flow with a fluid stagnation point (zero-velocity point). In this device, particles are confined at the trap center by active control of the flow field to maintain particle position at the fluid stagnation point. In this manner, particles are effectively trapped in free solution using a feedback control algorithm implemented with a custom-built LabVIEW code. The control algorithm consists of image acquisition for a particle in the microfluidic device, followed by particle tracking, determination of particle centroid position, and active adjustment of fluid flow by regulating the pressure applied to an on-chip pneumatic valve using a pressure regulator. In this way, the on-chip dynamic metering valve functions to regulate the relative flow rates in the outlet channels, thereby enabling fine-scale control of stagnation point position and particle trapping. The microfluidic-based hydrodynamic trap exhibits several advantages as a method for particle trapping. Hydrodynamic trapping is possible for any arbitrary particle without specific requirements on the physical or chemical properties of the trapped object. In addition, hydrodynamic trapping enables confinement of a "single" target object in

  3. A Dynamically Adaptive Arbitrary Lagrangian-Eulerian Method for Hydrodynamics

    SciTech Connect

    Anderson, R W; Pember, R B; Elliott, N S

    2004-01-28

    A new method that combines staggered grid Arbitrary Lagrangian-Eulerian (ALE) techniques with structured local adaptive mesh refinement (AMR) has been developed for solution of the Euler equations. The novel components of the combined ALE-AMR method hinge upon the integration of traditional AMR techniques with both staggered grid Lagrangian operators as well as elliptic relaxation operators on moving, deforming mesh hierarchies. Numerical examples demonstrate the utility of the method in performing detailed three-dimensional shock-driven instability calculations.

  4. A Dynamically Adaptive Arbitrary Lagrangian-Eulerian Method for Hydrodynamics

    SciTech Connect

    Anderson, R W; Pember, R B; Elliott, N S

    2002-10-19

    A new method that combines staggered grid Arbitrary Lagrangian-Eulerian (ALE) techniques with structured local adaptive mesh refinement (AMR) has been developed for solution of the Euler equations. The novel components of the combined ALE-AMR method hinge upon the integration of traditional AMR techniques with both staggered grid Lagrangian operators as well as elliptic relaxation operators on moving, deforming mesh hierarchies. Numerical examples demonstrate the utility of the method in performing detailed three-dimensional shock-driven instability calculations.

  5. Uplink Coding

    NASA Technical Reports Server (NTRS)

    Pollara, Fabrizio; Hamkins, Jon; Dolinar, Sam; Andrews, Ken; Divsalar, Dariush

    2006-01-01

    This viewgraph presentation reviews uplink coding. The purpose and goals of the briefing are (1) Show a plan for using uplink coding and describe benefits (2) Define possible solutions and their applicability to different types of uplink, including emergency uplink (3) Concur with our conclusions so we can embark on a plan to use proposed uplink system (4) Identify the need for the development of appropriate technology and infusion in the DSN (5) Gain advocacy to implement uplink coding in flight projects Action Item EMB04-1-14 -- Show a plan for using uplink coding, including showing where it is useful or not (include discussion of emergency uplink coding).

  6. DualSPHysics: Open-source parallel CFD solver based on Smoothed Particle Hydrodynamics (SPH)

    NASA Astrophysics Data System (ADS)

    Crespo, A. J. C.; Domínguez, J. M.; Rogers, B. D.; Gómez-Gesteira, M.; Longshaw, S.; Canelas, R.; Vacondio, R.; Barreiro, A.; García-Feal, O.

    2015-02-01

    DualSPHysics is a hardware accelerated Smoothed Particle Hydrodynamics code developed to solve free-surface flow problems. DualSPHysics is an open-source code developed and released under the terms of GNU General Public License (GPLv3). Along with the source code, a complete documentation that makes easy the compilation and execution of the source files is also distributed. The code has been shown to be efficient and reliable. The parallel power computing of Graphics Computing Units (GPUs) is used to accelerate DualSPHysics by up to two orders of magnitude compared to the performance of the serial version.

  7. Simulating Rayleigh-Taylor (RT) instability using PPM hydrodynamics @scale on Roadrunner (u)

    SciTech Connect

    Woodward, Paul R; Dimonte, Guy; Rockefeller, Gabriel M; Fryer, Christopher L; Dimonte, Guy; Dai, W; Kares, R. J.

    2011-01-05

    The effect of initial conditions on the self-similar growth of the RT instability is investigated using a hydrodynamics code based on the piecewise-parabolic-method (PPM). The PPM code was converted to the hybrid architecture of Roadrunner in order to perform the simulations at extremely high speed and spatial resolution. This paper describes the code conversion to the Cell processor, the scaling studies to 12 CU's on Roadrunner and results on the dependence of the RT growth rate on initial conditions. The relevance of the Roadrunner implementation of this PPM code to other existing and anticipated computer architectures is also discussed.

  8. Cosmological Hydrodynamics on a Moving Mesh

    NASA Astrophysics Data System (ADS)

    Hernquist, Lars

    We propose to construct a model for the visible Universe using cosmological simulations of structure formation. Our simulations will include both dark matter and baryons, and will employ two entirely different schemes for evolving the gas: smoothed particle hydrodynamics (SPH) and a moving mesh approach as incorporated in the new code, AREPO. By performing simulations that are otherwise nearly identical, except for the hydrodynamics solver, we will isolate and understand differences in the properties of galaxies, galaxy groups and clusters, and the intergalactic medium caused by the computational approach that have plagued efforts to understand galaxy formation for nearly two decades. By performing simulations at different levels of resolution and with increasingly complex treatments of the gas physics, we will identify the results that are converged numerically and that are robust with respect to variations in unresolved physical processes, especially those related to star formation, black hole growth, and related feedback effects. In this manner, we aim to undertake a research program that will redefine the state of the art in cosmological hydrodynamics and galaxy formation. In particular, we will focus our scientific efforts on understanding: 1) the formation of galactic disks in a cosmological context; 2) the physical state of diffuse gas in galaxy clusters and groups so that they can be used as high-precision probes of cosmology; 3) the nature of gas inflows into galaxy halos and the subsequent accretion of gas by forming disks; 4) the co-evolution of galaxies and galaxy clusters with their central supermassive black holes and the implications of related feedback for galaxy evolution and the dichotomy between blue and red galaxies; 5) the physical state of the intergalactic medium (IGM) and the evolution of the metallicity of the IGM; and 6) the reaction of dark matter around galaxies to galaxy formation. Our proposed work will be of immediate significance for

  9. SPHRAY: A Smoothed Particle Hydrodynamics Ray Tracer for Radiative Transfer

    NASA Astrophysics Data System (ADS)

    Altay, Gabriel; Croft, Rupert A. C.; Pelupessy, Inti

    2011-03-01

    SPHRAY, a Smoothed Particle Hydrodynamics (SPH) ray tracer, is designed to solve the 3D, time dependent, radiative transfer (RT) equations for arbitrary density fields. The SPH nature of SPHRAY makes the incorporation of separate hydrodynamics and gravity solvers very natural. SPHRAY relies on a Monte Carlo (MC) ray tracing scheme that does not interpolate the SPH particles onto a grid but instead integrates directly through the SPH kernels. Given initial conditions and a description of the sources of ionizing radiation, the code will calculate the non-equilibrium ionization state (HI, HII, HeI, HeII, HeIII, e) and temperature (internal energy/entropy) of each SPH particle. The sources of radiation can include point like objects, diffuse recombination radiation, and a background field from outside the computational volume. The MC ray tracing implementation allows for the quick introduction of new physics and is parallelization friendly. A quick Axis Aligned Bounding Box (AABB) test taken from computer graphics applications allows for the acceleration of the raytracing component. We present the algorithms used in SPHRAY and verify the code by performing all the test problems detailed in the recent Radiative Transfer Comparison Project of Iliev et. al. The Fortran 90 source code for SPHRAY and example SPH density fields are made available online.

  10. Radiation Hydrodynamics Test Problems with Linear Velocity Profiles

    SciTech Connect

    Hendon, Raymond C.; Ramsey, Scott D.

    2012-08-22

    As an extension of the works of Coggeshall and Ramsey, a class of analytic solutions to the radiation hydrodynamics equations is derived for code verification purposes. These solutions are valid under assumptions including diffusive radiation transport, a polytropic gas equation of state, constant conductivity, separable flow velocity proportional to the curvilinear radial coordinate, and divergence-free heat flux. In accordance with these assumptions, the derived solution class is mathematically invariant with respect to the presence of radiative heat conduction, and thus represents a solution to the compressible flow (Euler) equations with or without conduction terms included. With this solution class, a quantitative code verification study (using spatial convergence rates) is performed for the cell-centered, finite volume, Eulerian compressible flow code xRAGE developed at Los Alamos National Laboratory. Simulation results show near second order spatial convergence in all physical variables when using the hydrodynamics solver only, consistent with that solver's underlying order of accuracy. However, contrary to the mathematical properties of the solution class, when heat conduction algorithms are enabled the calculation does not converge to the analytic solution.

  11. Comparison of Hydrodynamic Calculations of Heavy Ion Collisions with Different Equations of State

    NASA Astrophysics Data System (ADS)

    Soltz, Ron; Moreland, Scott

    2015-10-01

    The QCD Equation of State (EoS) is an essential ingredient for the hydrodynamic models used to study heavy ion collisions. Recent results by the HotQCD and Wuppertal-Budapest collaborations lattice gauge calculations of the QCD EoS at the continuum limit show good agreement within errors. However it is unknown whether current errors are sufficient for current simulations or whether further improvements are needed. We explore this question by performing hydrodynamic calculations with the VISHNU 2+1D hydrodynamic code with fluctuating initial conditions and UrQMD cascade code for the two EoS calculations and a sampling of EoS curves within the given errors. Comparisons are made to spectra (π, K, p), flow (v2 ,v3), and azimuthally averaged HBT radii for 200 GeV Au+Au collisions. Relative variations in the results and comparisons to data where appropriate will be presented and discussed.

  12. Hydrodynamical Simulations of the Uranian Rings

    NASA Astrophysics Data System (ADS)

    Mosqueira, I.; Estrada, P. R.; Brookshaw, L.

    1996-09-01

    We investigate the global dynamics of the Uranian rings using a modified 2-D smoothed particle hydrodynamic code combined with a 2-D tree code used to compute the particle-to-particle gravitational interactions. This code includes epicyclic fluid motion, non-axisymmetric flow, local and non-local shear viscocity, self-consistent scale height evolution, ring-satellites gravitational interaction and co-evolution, and ring self-gravity. To follow the scale height of each particle we solve the vertical momentum equation for the flow using a Runge-Kutta scheme with a second order polynomial fit to the vertical behavior of the fluid pressure (Borderies, Goldreich, and Tremaine 1985. Icarus, 63, 406). The behavior of the fluid viscocity is obtained from Mosqueira (1996. Icarus, 122, 128) who found good agreement between an extension to the non-local viscocity model of Borderies, Goldreich, and Tremaine (1985) that includes local terms with the results of a local patch-code ring simulation. Our present viscocity model incorporates further terms which account for the epicyclic limit to the mean free path (Goldreich and Tremaine 1978. Icarus, 34, 227). This treatment covers both the high and low ring density regimes. Our approach treats the fluid work terms and internal energy self-consistently even in the presence of a non-zero divergence of the fluid velocity. Even within a 2-D framework the Uranian rings are so thin compared to their semi-major axes that radial resolution requires too many particles given our present computer resources. To address this issue we have developed a physical scaling that reduces the semi-major axis of the ring while preserving its width and, we believe, retains the relevant global satellite-ring dynamics. With a conservative value of the scaling parameter that reduces the ring's semi-major axis by a factor of 10, our scaling allows for savings between a factor of 20 in the case of synodic time scales, a factor of 200 for shear timescales, and

  13. Numerical simulation of the hydrodynamic instability experiments and flow mixing

    NASA Astrophysics Data System (ADS)

    Bai, Jingsong; Wang, Tao; Li, Ping; Zou, Liyong; Liu, Cangli

    2009-12-01

    Based on the numerical methods of volume of fluid (VOF) and piecewise parabolic method (PPM) and parallel circumstance of Message Passing Interface (MPI), a parallel multi-viscosity-fluid hydrodynamic code MVPPM (Multi-Viscosity-Fluid Piecewise Parabolic Method) is developed and performed to study the hydrodynamic instability and flow mixing. Firstly, the MVPPM code is verified and validated by simulating three instability cases: The first one is a Riemann problem of viscous flow on the shock tube; the second one is the hydrodynamic instability and mixing of gaseous flows under re-shocks; the third one is a half height experiment of interfacial instability, which is conducted on the AWE’s shock tube. By comparing the numerical results with experimental data, good agreement is achieved. Then the MVPPM code is applied to simulate the two cases of the interfacial instabilities of jelly models accelerated by explosion products of a gaseous explosive mixture (GEM), which are adopted in our experiments. The first is implosive dynamic interfacial instability of cylindrical symmetry and mixing. The evolving process of inner and outer interfaces, and the late distribution of mixing mass caused by Rayleigh-Taylor (RT) instability in the center of different radius are given. The second is jelly layer experiment which is initialized with one periodic perturbation with different amplitude and wave length. It reveals the complex processes of evolution of interface, and presents the displacement of front face of jelly layer, bubble head and top of spike relative to initial equilibrium position vs. time. The numerical results are in excellent agreement with that experimental images, and show that the amplitude of initial perturbations affects the evolvement of fluid mixing zone (FMZ) growth rate extremely, especially at late times.

  14. Moving mesh cosmology: the hydrodynamics of galaxy formation

    NASA Astrophysics Data System (ADS)

    Sijacki, Debora; Vogelsberger, Mark; Kereš, Dušan; Springel, Volker; Hernquist, Lars

    2012-08-01

    We present a detailed comparison between the well-known smoothed particle hydrodynamics (SPH) code GADGET and the new moving-mesh code AREPO on a number of hydrodynamical test problems. Through a variety of numerical experiments with increasing complexity we establish a clear link between simple test problems with known analytic solutions and systematic numerical effects seen in cosmological simulations of galaxy formation. Our tests demonstrate deficiencies of the SPH method in several sectors. These accuracy problems not only manifest themselves in idealized hydrodynamical tests, but also propagate to more realistic simulation set-ups of galaxy formation, ultimately affecting local and global gas properties in the full cosmological framework, as highlighted in companion papers by Vogelsberger et al. and Keres et al. We find that an inadequate treatment of fluid instabilities in GADGET suppresses entropy generation by mixing, underestimates vorticity generation in curved shocks and prevents efficient gas stripping from infalling substructures. Moreover, in idealized tests of inside-out disc formation, the convergence rate of gas disc sizes is much slower in GADGET due to spurious angular momentum transport. In simulations where we follow the interaction between a forming central disc and orbiting substructures in a massive halo, the final disc morphology is strikingly different in the two codes. In AREPO, gas from infalling substructures is readily depleted and incorporated into the host halo atmosphere, facilitating the formation of an extended central disc. Conversely, gaseous sub-clumps are more coherent in GADGET simulations, morphologically transforming the central disc as they impact it. The numerical artefacts of the SPH solver are particularly severe for poorly resolved flows, and thus inevitably affect cosmological simulations due to their inherently hierarchical nature. Taken together, our numerical experiments clearly demonstrate that AREPO delivers a

  15. A simple coupling of ALE domain with empirical blast load function in LS-DYNA

    NASA Astrophysics Data System (ADS)

    Gilson, L.; Van Roey, J.; Guéders, C.; Gallant, J.; Rabet, L.

    2012-08-01

    Blast effects on structures are of great interest both in the civilian and military domain. This fact leads to the need of the development of simple and efficient simulation methods. The two common and most used methods have a very different philosophy. The first one is the construction of a full Eulerian domain containing both the detonating charge and the sollicitated structure. An inconvenience of this method is the very long duration of the simulation since the entire external domain is modelled, especially if the charge-structure distance is very large. The second method is the direct application of the corresponding loading based on empirical data (from ConWep) to the structure without simulating the external domain. Although this method allows a consequent time benefit, it has also some disadvantages such as the fact that shadowing, ground reflection and side effects are not taken into account. Moreover, every structure is considered as rigid since the load directly applied is the reflected pressure from ConWep's database, which gives only the reflected pressure in a rigid case. This can be a problem for the application of blast loading on elastic, low-impedance materials such as granular materials or even on small density structures that are able to have a non-negligible displacement during the positive phase duration of the loading. Material impedance and structure displacement might alter the shockwave-structure interaction. A new method using both philosophies has been developed by Slavik [2]. In this method, an Arbitrary Lagrangian-Eulerian mesh (ALE) is created only around the structure in which the empirical incident pressure is applied. The loading is applied onto the air domain, propagates to the structure and interacts with this structure. At this time, the material parameters of the structure and its displacement are taken into account. This paper aims to evaluate third method's capabilities. Moreover, it studies the influence of structure

  16. ALE meta-analysis of action observation and imitation in the human brain

    PubMed Central

    Caspers, Svenja; Zilles, Karl; Laird, Angela R.; Eickhoff, Simon B.

    2016-01-01

    Over the last decade, many neuroimaging studies have assessed the human brain networks underlying action observation and imitation using a variety of tasks and paradigms. Nevertheless, questions concerning which areas consistently contribute to these networks irrespective of the particular experimental design and how such processing may be lateralized remain unresolved. The current study aimed at identifying cortical areas consistently involved in action observation and imitation by combining activation likelihood estimation (ALE) meta-analysis with probabilistic cytoarchitectonic maps. Meta-analysis of 139 functional magnetic resonance and positron emission tomography experiments revealed a bilateral network for both action observation and imitation. Additional subanalyses for different effectors within each network revealed highly comparable activation patterns to the overall analyses on observation and imitation, respectively, indicating an independence of these findings from potential confounds. Conjunction analysis of action observation and imitation meta-analyses revealed a bilateral network within frontal premotor, parietal, and temporo-occipital cortex. The most consistently rostral inferior parietal area was PFt, providing evidence for a possible homology of this region to macaque area PF. The observation and imitation networks differed particularly with respect to the involvement of Broca's area: whereas both networks involved a caudo-dorsal part of BA 44, activation during observation was most consistent in a more rostro-dorsal location, i.e., dorsal BA 45, while activation during imitation was most consistent in a more ventro-caudal aspect, i.e., caudal BA 44. The present meta-analysis thus summarizes and amends previous descriptions of the human brain networks related to action observation and imitation. PMID:20056149

  17. Cerebellar contributions to visuomotor adaptation and motor sequence learning: an ALE meta-analysis

    PubMed Central

    Bernard, Jessica A.; Seidler, Rachael D.

    2013-01-01

    Cerebellar contributions to motor learning are well-documented. For example, under some conditions, patients with cerebellar damage are impaired at visuomotor adaptation and at acquiring new action sequences. Moreover, cerebellar activation has been observed in functional MRI (fMRI) investigations of various motor learning tasks. The early phases of motor learning are cognitively demanding, relying on processes such as working memory, which have been linked to the cerebellum as well. Here, we investigated cerebellar contributions to motor learning using activation likelihood estimation (ALE) meta-analysis. This allowed us to determine, across studies and tasks, whether or not the location of cerebellar activation is constant across differing motor learning tasks, and whether or not cerebellar activation in early learning overlaps with that observed for working memory. We found that different regions of the anterior cerebellum are engaged for implicit and explicit sequence learning and visuomotor adaptation, providing additional evidence for the modularity of cerebellar function. Furthermore, we found that lobule VI of the cerebellum, which has been implicated in working memory, is activated during the early stages of explicit motor sequence learning. This provides evidence for a potential role for the cerebellum in the cognitive processing associated with motor learning. However, though lobule VI was activated across both early explicit sequence learning and working memory studies, there was no spatial overlap between these two regions. Together, our results support the idea of modularity in the formation of internal representations of new motor tasks in the cerebellum, and highlight the cognitive processing relied upon during the early phases of motor skill learning. PMID:23403800

  18. An ALE Meta-Analysis on the Audiovisual Integration of Speech Signals

    PubMed Central

    Erickson, Laura C.; Heeg, Elizabeth; Rauschecker, Josef P.; Turkeltaub, Peter E.

    2014-01-01

    The brain improves speech processing through the integration of audiovisual (AV) signals. Situations involving AV speech integration may be crudely dichotomized into those where auditory and visual inputs contain 1) equivalent, complementary signals (validating AV speech), or 2) inconsistent, different signals (conflicting AV speech). This simple framework may allow for the systematic examination of broad commonalities and differences between AV neural processes engaged by various experimental paradigms frequently used to study AV speech integration. We conducted an activation likelihood estimation (ALE) meta-analysis of 22 functional imaging studies comprising 33 experiments, 311 subjects, and 347 foci examining “conflicting” versus “validating” AV speech. Experimental paradigms included content congruency, timing synchrony, and perceptual measures, such as the McGurk effect or synchrony judgments, across AV speech stimulus types (sub-lexical to sentence). Co-localization of conflicting AV speech experiments revealed consistency across at least two contrast types (e.g., synchrony and congruency) in a network of dorsal-stream regions in the frontal, parietal, and temporal lobes. There was consistency across all contrast types (synchrony, congruency, and percept) in the bilateral posterior superior/middle temporal cortex. Although fewer studies were available, validating AV speech experiments were localized to other regions, such as ventral-stream visual areas in the occipital and inferior temporal cortex. These results suggest that while equivalent, complementary AV speech signals may evoke activity in regions related to the corroboration of sensory input, conflicting AV speech signals recruit widespread dorsal-stream areas likely involved in the resolution of conflicting sensory signals. PMID:24996043

  19. Identifying neural correlates of visual consciousness with ALE meta-analyses.

    PubMed

    Bisenius, Sandrine; Trapp, Sabrina; Neumann, Jane; Schroeter, Matthias L

    2015-11-15

    Neural correlates of consciousness (NCC) have been a topic of study for nearly two decades. In functional imaging studies, several regions have been proposed to constitute possible candidates for NCC, but as of yet, no quantitative summary of the literature on NCC has been done. The question whether single (striate or extrastriate) regions or a network consisting of extrastriate areas that project directly to fronto-parietal regions are necessary and sufficient neural correlates for visual consciousness is still highly debated [e.g., Rees et al., 2002, Nat Rev. Neurosci 3, 261-270; Tong, 2003, Nat Rev. Neurosci 4, 219-229]. The aim of this work was to elucidate this issue and give a synopsis of the present state of the art by conducting systematic and quantitative meta-analyses across functional magnetic resonance imaging (fMRI) studies using several standard paradigms for conscious visual perception. In these paradigms, consciousness is operationalized via perceptual changes, while the visual stimulus remains invariant. An activation likelihood estimation (ALE) meta-analysis was performed, representing the best approach for voxel-wise meta-analyses to date. In addition to computing a meta-analysis across all paradigms, separate meta-analyses on bistable perception and masking paradigms were conducted to assess whether these paradigms show common or different NCC. For the overall meta-analysis, we found significant clusters of activation in inferior and middle occipital gyrus; fusiform gyrus; inferior temporal gyrus; caudate nucleus; insula; inferior, middle, and superior frontal gyri; precuneus; as well as in inferior and superior parietal lobules. These results suggest a subcortical-extrastriate-fronto-parietal network rather than a single region that constitutes the necessary NCC. The results of our exploratory paradigm-specific meta-analyses suggest that this subcortical-extrastriate-fronto-parietal network might be differentially activated as a function of the

  20. Discrete Wavelet Packet Transforms and volcanic tremor: method and application to Erta 'Ale, Ethiopia

    NASA Astrophysics Data System (ADS)

    Jones, J. P.; Carniel, R.; Malone, S.

    2005-12-01

    The time-varying properties of volcanic tremor demand advanced techniques capable of analyzing changes in both time and frequency domains. Specifically, rapid data preprocessing techniques with the ability to distinguish signal from noise are especially valuable in analyzing the temporal, spatial, and spectral properties of these signals. To this end, we use the Discrete Wavelet Packet Transform and the Best Shift Basis algorithm to select an orthonormal basis for continuous volcanic tremor data, then apply a simple statistical test to eliminate frequency bands that primarily consist of Gaussian white noise. We then use the Maximal Overlap Discrete Wavelet Packet Transform to compute and analyze features in the detail coefficients of each "signal" band. Because MODWPT detail coefficients are equivalent to a time series convolved with a zero phase filter, we apply standard polarization and amplitude-based location techniques to each frequency band's detail coefficients to analyze possible source locations and mechanisms. To demonstrate the usefulness of these techniques, we present a sample analysis of data from Erta 'Ale volcano, Ethiopia, recorded on a temporary network in November 2003. Data were sampled at 100 Hz and the DWPT was computed with the LA(16) wavelet to a maximum level of j = 7. The optimal basis for this data set consists of 54 frequency bands, but only 9 contain meaningful "signal" energy. We identify two frequency bands whose locations suggest a distributed source; three frequency bands whose signals may come from the lava lake itself; three high-frequency bands of scattered energy; and one very high frequency band of non-Gaussian instrument noise. Finally, we discuss optimization efforts, computational efficiency, and the feasibility of using similar wavelet methods to preprocess data in real time or near real time.

  1. Hydrodynamic Theory of Atomic Mixing in Multicomponent Gases and Plasmas

    SciTech Connect

    Ramshaw, J D

    2001-08-22

    Atomic mixing in multicomponent gases and plasmas is usually described as a diffusional process. The diffusional description is an approximation to a more general dynamical description in which the motion of each individual species or material is governed by its own momentum equation, with appropriate coupling terms to represent the exchange of momentum between different species. These equations are not new, but they are scattered in the literature. Here we summarize the form of these species momentum equations, and the coupling coefficients therein, in sufficient detail to facilitate their inclusion and use to simulate atomic mixing in hydrodynamics codes.

  2. Modeling hydrodynamics, water quality, and benthic processes to predict ecological effects in Narragansett Bay

    EPA Science Inventory

    The environmental fluid dynamics code (EFDC) was used to study the three dimensional (3D) circulation, water quality, and ecology in Narragansett Bay, RI. Predictions of the Bay hydrodynamics included the behavior of the water surface elevation, currents, salinity, and temperatur...

  3. Annual Report: Hydrodynamics and Radiative Hydrodynamics with Astrophysical Applications

    SciTech Connect

    R. Paul Drake

    2005-12-01

    We report the ongoing work of our group in hydrodynamics and radiative hydrodynamics with astrophysical applications. During the period of the existing grant, we have carried out two types of experiments at the Omega laser. One set of experiments has studied radiatively collapsing shocks, obtaining high-quality scaling data using a backlit pinhole and obtaining the first (ever, anywhere) Thomson-scattering data from a radiative shock. Other experiments have studied the deeply nonlinear development of the Rayleigh-Taylor (RT) instability from complex initial conditions, obtaining the first (ever, anywhere) dual-axis radiographic data using backlit pinholes and ungated detectors. All these experiments have applications to astrophysics, discussed in the corresponding papers either in print or in preparation. We also have obtained preliminary radiographs of experimental targets using our x-ray source. The targets for the experiments have been assembled at Michigan, where we also prepare many of the simple components. The above activities, in addition to a variety of data analysis and design projects, provide good experience for graduate and undergraduates students. In the process of doing this research we have built a research group that uses such work to train junior scientists.

  4. Forced wetting and hydrodynamic assist

    NASA Astrophysics Data System (ADS)

    Blake, Terence D.; Fernandez-Toledano, Juan-Carlos; Doyen, Guillaume; De Coninck, Joël

    2015-11-01

    Wetting is a prerequisite for coating a uniform layer of liquid onto a solid. Wetting failure and air entrainment set the ultimate limit to coating speed. It is well known in the coating art that this limit can be postponed by manipulating the coating flow to generate what has been termed "hydrodynamic assist," but the underlying mechanism is unclear. Experiments have shown that the conditions that postpone air entrainment also reduce the apparent dynamic contact angle, suggesting a direct link, but how the flow might affect the contact angle remains to be established. Here, we use molecular dynamics to compare the outcome of steady forced wetting with previous results for the spontaneous spreading of liquid drops and apply the molecular-kinetic theory of dynamic wetting to rationalize our findings and place them on a quantitative footing. The forced wetting simulations reveal significant slip at the solid-liquid interface and details of the flow immediately adjacent to the moving contact line. Our results confirm that the local, microscopic contact angle is dependent not simply only on the velocity of wetting but also on the nature of the flow that drives it. In particular, they support an earlier suggestion that during forced wetting, an intense shear stress in the vicinity of the contact line can assist surface tension forces in promoting dynamic wetting, thus reducing the velocity-dependence of the contact angle. Hydrodynamic assist then appears as a natural consequence of wetting that emerges when the contact line is driven by a strong and highly confined flow. Our theoretical approach also provides a self-consistent model of molecular slip at the solid-liquid interface that enables its magnitude to be estimated from dynamic contact angle measurements. In addition, the model predicts how hydrodynamic assist and slip may be influenced by liquid viscosity and solid-liquid interactions.

  5. Hydrodynamic loading of tensegrity structures

    NASA Astrophysics Data System (ADS)

    Wroldsen, Anders S.; Johansen, Vegar; Skelton, Robert E.; Sørensen, Asgeir J.

    2006-03-01

    This paper introduces hydrodynamic loads for tensegrity structures, to examine their behavior in marine environments. Wave compliant structures are of general interest when considering large marine structures, and we are motivated by the aquaculture industry where new concepts are investigated in order to make offshore installations for seafood production. This paper adds to the existing models and software simulations of tensegrity structures exposed to environmental loading from waves and current. A number of simulations are run to show behavior of the structure as a function of pretension level and string stiffness for a given loading condition.

  6. Flame front as hydrodynamic discontinuity

    NASA Astrophysics Data System (ADS)

    Fukumoto, Yasuhide; Abarzhi, Snezhana

    2012-11-01

    We applied generalized Rankine-Hugoniot conditions to study the dynamics of unsteady and curved fronts as a hydrodynamic discontinuity. It is shown that the front is unstable and Landau-Darrieus instability develops only if three conditions are satisfied (1) large-scale vorticity is generated in the fluid bulk; (2) energy flux across the front is imbalanced; (3) the energy imbalance is large. The structure of the solution is studied in details. Flows with and without gravity and thermal diffusion are analyzed. Stabilization mechanisms are identified. NSF 1004330.

  7. Quasi-Static Hydrodynamic Limits

    NASA Astrophysics Data System (ADS)

    De Masi, Anna; Olla, Stefano

    2015-12-01

    We consider hydrodynamic limits of interacting particles systems with open boundaries, where the exterior parameters change in a time scale slower than the typical relaxation time scale. The limit deterministic profiles evolve quasi-statically. These limits define rigorously the thermodynamic quasi static transformations also for transitions between non-equilibrium stationary states. We study first the case of the symmetric simple exclusion, where duality can be used, and then we use relative entropy methods to extend to other models like zero range systems. Finally we consider a chain of anharmonic oscillators in contact with a thermal Langevin bath with a temperature gradient and a slowly varying tension applied to one end.

  8. Hydrodynamics of a quark droplet

    NASA Astrophysics Data System (ADS)

    Bjerrum-Bohr, Johan J.; Mishustin, Igor N.; Døssing, Thomas

    2012-05-01

    We present a simple model of a multi-quark droplet evolution based on the hydrodynamical description. This model includes collective expansion of the droplet, effects of the vacuum pressure and surface tension. The hadron emission from the droplet is described following Weisskopf's statistical model. We have considered evolution of baryon-free droplets which have different initial temperatures and expansion rates. As a typical trend we observe an oscillating behavior of the droplet radius superimposed with a gradual shrinkage due to the hadron emission. The characteristic life time of droplets with radii 1.5-2 fm are about 9-16 fm/c.

  9. Microscale hydrodynamics near moving contact lines

    NASA Technical Reports Server (NTRS)

    Garoff, Stephen; Chen, Q.; Rame, Enrique; Willson, K. R.

    1994-01-01

    The hydrodynamics governing the fluid motions on a microscopic scale near moving contact lines are different from those governing motion far from the contact line. We explore these unique hydrodynamics by detailed measurement of the shape of a fluid meniscus very close to a moving contact line. The validity of present models of the hydrodynamics near moving contact lines as well as the dynamic wetting characteristics of a family of polymer liquids are discussed.

  10. Averaged implicit hydrodynamic model of semiflexible filaments.

    PubMed

    Chandran, Preethi L; Mofrad, Mohammad R K

    2010-03-01

    We introduce a method to incorporate hydrodynamic interaction in a model of semiflexible filament dynamics. Hydrodynamic screening and other hydrodynamic interaction effects lead to nonuniform drag along even a rigid filament, and cause bending fluctuations in semiflexible filaments, in addition to the nonuniform Brownian forces. We develop our hydrodynamics model from a string-of-beads idealization of filaments, and capture hydrodynamic interaction by Stokes superposition of the solvent flow around beads. However, instead of the commonly used first-order Stokes superposition, we do an equivalent of infinite-order superposition by solving for the true relative velocity or hydrodynamic velocity of the beads implicitly. We also avoid the computational cost of the string-of-beads idealization by assuming a single normal, parallel and angular hydrodynamic velocity over sections of beads, excluding the beads at the filament ends. We do not include the end beads in the averaging and solve for them separately instead, in order to better resolve the drag profiles along the filament. A large part of the hydrodynamic drag is typically concentrated at the filament ends. The averaged implicit hydrodynamics methods can be easily incorporated into a string-of-rods idealization of semiflexible filaments that was developed earlier by the authors. The earlier model was used to solve the Brownian dynamics of semiflexible filaments, but without hydrodynamic interactions incorporated. We validate our current model at each stage of development, and reproduce experimental observations on the mean-squared displacement of fluctuating actin filaments . We also show how hydrodynamic interaction confines a fluctuating actin filament between two stationary lateral filaments. Finally, preliminary examinations suggest that a large part of the observed velocity in the interior segments of a fluctuating filament can be attributed to induced solvent flow or hydrodynamic screening. PMID:20365783

  11. Altimetry in the coastal ocean: regional sea level from CryoSat-2 and ALES-reprocessed Envisat

    NASA Astrophysics Data System (ADS)

    Passaro, Marcello; Benveniste, Jérôme; Cipollini, Paolo; Dinardo, Salvatore; Lucas, Bruno; Quartly, Graham; Snaith, Helen

    2015-04-01

    Satellite altimetry has revolutionized our understanding of ocean dynamics thanks to finer spatial sampling and global coverage. Nevertheless, coastal data have been flagged as unreliable due to land and calm water interference in the altimeter and radiometer footprints and uncertainty about high frequency tidal and atmospheric forcing. Recent developments in processing and the availability of new instruments are now bringing new possibilities to sea level studies in the coastal zone. This contribution presents some of the improvements achievable with 1) enhanced processing ('retracking') of the waveforms from conventional ('pulse-limited') altimeters, and 2) the exploitation of the new generation of SAR altimeters. A dedicated retracking algorithm, ALES the Adaptive Leading Edge Subwaveform retracker, has been designed and validated with the aim of reaching the same precision in the estimate of geophysical parameters from pulse-limited altimetry both over open ocean and in the coastal zone. In this study we provide clear evidence that ALES reprocessing improves quality and quantity of Envisat sea level measurements, by comparing the data with the reference time series of Sea Level provided by the Sea Level Climate Change Initiative (SL_cci) and with in-situ data from tide gauges in the North Sea/Baltic Sea transition zone. In the western Arkona Basin (Baltic Sea) correlation between altimetry and tide gauges within 15 km of the coast almost doubles using ALES. In the eastern Arkona Basin, the annual sea level amplitude derived from ALES and tide gauges differ by ~10 mm, while SL_cci overestimates it by 4 cm. The new generation of altimeters ('SAR', or delay-doppler altimeters) is providing higher precision in the sea level measurements, thanks to their coherent processing of returns with a high Pulse Repetition Frequency (PRF) and the resultant reduced footprint. CryoSat-2 (CS-2) carries the first SAR altimeter in space. An experimental ocean product (SARvatore

  12. Hydrodynamics of Radioactivity Injection into the Presolar Cloud

    NASA Astrophysics Data System (ADS)

    Davis, K. W.; Leising, M. D.

    2003-05-01

    Live short-lived radionuclides detected in early solar system materials constrain the time between their creation and the formation of solids in the early solar system. The travel time from a stellar source and time for the presolar cloud to start condensing into solids would seem to take too long for radionuclides with lifetimes of only a few Myr to still be alive. Among several possible explanations is a supernova explosion near the presolar cloud both seeding the cloud with the short-lived radionuclides and initiating cloud collapse. Several of the detected short-lived radionuclides are only found deep within the supernova material, begging the question of how they become incorporated into a molecular cloud when the ISM and outer layers of ejecta lie between them and the cloud. Some have proposed that hydrodynamic instabilities can inject the appropriate material into the cloud. We perform simulations using the Zeus-2D hydrodynamic code to investigate the effect of hydrodynamic instabilites on injection of supernova material into a cold molecular cloud. We model the supernova as a hot, high density bubble of gas allowed to expand into the ISM and collide with a cold dense cloud and give it a very low value of angular momentum to distiguish its material from the ambiant ISM and cloud material.

  13. Collision-dominated nonlinear hydrodynamics in graphene

    NASA Astrophysics Data System (ADS)

    Briskot, U.; Schütt, M.; Gornyi, I. V.; Titov, M.; Narozhny, B. N.; Mirlin, A. D.

    2015-09-01

    We present an effective hydrodynamic theory of electronic transport in graphene in the interaction-dominated regime. We derive the emergent hydrodynamic description from the microscopic Boltzmann kinetic equation taking into account dissipation due to Coulomb interaction and find the viscosity of Dirac fermions in graphene for arbitrary densities. The viscous terms have a dramatic effect on transport coefficients in clean samples at high temperatures. Within linear response, we show that viscosity manifests itself in the nonlocal conductivity as well as dispersion of hydrodynamic plasmons. Beyond linear response, we apply the derived nonlinear hydrodynamics to the problem of hot-spot relaxation in graphene.

  14. Thermal transport in a noncommutative hydrodynamics

    SciTech Connect

    Geracie, M. Son, D. T.

    2015-03-15

    We find the hydrodynamic equations of a system of particles constrained to be in the lowest Landau level. We interpret the hydrodynamic theory as a Hamiltonian system with the Poisson brackets between the hydrodynamic variables determined from the noncommutativity of space. We argue that the most general hydrodynamic theory can be obtained from this Hamiltonian system by allowing the Righi-Leduc coefficient to be an arbitrary function of thermodynamic variables. We compute the Righi-Leduc coefficient at high temperatures and show that it satisfies the requirements of particle-hole symmetry, which we outline.

  15. Code Verification Results of an LLNL ASC Code on Some Tri-Lab Verification Test Suite Problems

    SciTech Connect

    Anderson, S R; Bihari, B L; Salari, K; Woodward, C S

    2006-12-29

    As scientific codes become more complex and involve larger numbers of developers and algorithms, chances for algorithmic implementation mistakes increase. In this environment, code verification becomes essential to building confidence in the code implementation. This paper will present first results of a new code verification effort within LLNL's B Division. In particular, we will show results of code verification of the LLNL ASC ARES code on the test problems: Su Olson non-equilibrium radiation diffusion, Sod shock tube, Sedov point blast modeled with shock hydrodynamics, and Noh implosion.

  16. Active and driven hydrodynamic crystals.

    PubMed

    Desreumaux, N; Florent, N; Lauga, E; Bartolo, D

    2012-08-01

    Motivated by the experimental ability to produce monodisperse particles in microfluidic devices, we study theoretically the hydrodynamic stability of driven and active crystals. We first recall the theoretical tools allowing to quantify the dynamics of elongated particles in a confined fluid. In this regime hydrodynamic interactions between particles arise from a superposition of potential dipolar singularities. We exploit this feature to derive the equations of motion for the particle positions and orientations. After showing that all five planar Bravais lattices are stationary solutions of the equations of motion, we consider separately the case where the particles are passively driven by an external force, and the situation where they are self-propelling. We first demonstrate that phonon modes propagate in driven crystals, which are always marginally stable. The spatial structures of the eigenmodes depend solely on the symmetries of the lattices, and on the orientation of the driving force. For active crystals, the stability of the particle positions and orientations depends not only on the symmetry of the crystals but also on the perturbation wavelengths and on the crystal density. Unlike unconfined fluids, the stability of active crystals is independent of the nature of the propulsion mechanism at the single-particle level. The square and rectangular lattices are found to be linearly unstable at short wavelengths provided the volume fraction of the crystals is high enough. Differently, hexagonal, oblique, and face-centered crystals are always unstable. Our work provides a theoretical basis for future experimental work on flowing microfluidic crystals. PMID:22864543

  17. Hydrodynamic dispersion within porous biofilms.

    PubMed

    Davit, Y; Byrne, H; Osborne, J; Pitt-Francis, J; Gavaghan, D; Quintard, M

    2013-01-01

    Many microorganisms live within surface-associated consortia, termed biofilms, that can form intricate porous structures interspersed with a network of fluid channels. In such systems, transport phenomena, including flow and advection, regulate various aspects of cell behavior by controlling nutrient supply, evacuation of waste products, and permeation of antimicrobial agents. This study presents multiscale analysis of solute transport in these porous biofilms. We start our analysis with a channel-scale description of mass transport and use the method of volume averaging to derive a set of homogenized equations at the biofilm-scale in the case where the width of the channels is significantly smaller than the thickness of the biofilm. We show that solute transport may be described via two coupled partial differential equations or telegrapher's equations for the averaged concentrations. These models are particularly relevant for chemicals, such as some antimicrobial agents, that penetrate cell clusters very slowly. In most cases, especially for nutrients, solute penetration is faster, and transport can be described via an advection-dispersion equation. In this simpler case, the effective diffusion is characterized by a second-order tensor whose components depend on (1) the topology of the channels' network; (2) the solute's diffusion coefficients in the fluid and the cell clusters; (3) hydrodynamic dispersion effects; and (4) an additional dispersion term intrinsic to the two-phase configuration. Although solute transport in biofilms is commonly thought to be diffusion dominated, this analysis shows that hydrodynamic dispersion effects may significantly contribute to transport. PMID:23410370

  18. The hydrodynamics of lamprey locomotion

    NASA Astrophysics Data System (ADS)

    Leftwich, Megan C.

    The lamprey, an anguilliform swimmer, propels itself by undulating most of its body. This type of swimming produces flow patterns that are highly three-dimensional in nature and not very well understood. However, substantial previous work has been done to understand two-dimensional unsteady propulsion, the possible wake structures and thrust performance. Limited studies of three-dimensional propulsors with simple geometries have displayed the importance of the third dimension in designing unsteady swimmers. Some of the results of those studies, primarily the ways in which vorticity is organized in the wake region, are seen in lamprey swimming as well. In the current work, the third dimension is not the only important factor, but complex geometry and body undulations also contribute to the hydrodynamics. Through dye flow visualization, particle induced velocimetry and pressure measurements, the hydrodynamics of anguilliform swimming are studied using a custom built robotic lamprey. These studies all indicate that the undulations of the body are not producing thrust. Instead, it is the tail which acts to propel the animal. This conclusion led to further investigation of the tail, specifically the role of varying tail flexibility on hydrodymnamics. It is found that by making the tail more flexible, one decreases the coherence of the vorticity in the lamprey's wake. Additional flexibility also yields less thrust.

  19. Web-based hydrodynamics computing

    NASA Astrophysics Data System (ADS)

    Shimoide, Alan; Lin, Luping; Hong, Tracie-Lynne; Yoon, Ilmi; Aragon, Sergio R.

    2005-01-01

    Proteins are long chains of amino acids that have a definite 3-d conformation and the shape of each protein is vital to its function. Since proteins are normally in solution, hydrodynamics (describes the movement of solvent around a protein as a function of shape and size of the molecule) can be used to probe the size and shape of proteins compared to those derived from X-ray crystallography. The computation chain needed for these hydrodynamics calculations consists of several separate programs by different authors on various platforms and often requires 3D visualizations of intermediate results. Due to the complexity, tools developed by a particular research group are not readily available for use by other groups, nor even by the non-experts within the same research group. To alleviate this situation, and to foment the easy and wide distribution of computational tools worldwide, we developed a web based interactive computational environment (WICE) including interactive 3D visualization that can be used with any web browser. Java based technologies were used to provide a platform neutral, user-friendly solution. Java Server Pages (JSP), Java Servlets, Java Beans, JOGL (Java bindings for OpenGL), and Java Web Start were used to create a solution that simplifies the computing chain for the user allowing the user to focus on their scientific research. WICE hides complexity from the user and provides robust and sophisticated visualization through a web browser.

  20. Web-based hydrodynamics computing

    NASA Astrophysics Data System (ADS)

    Shimoide, Alan; Lin, Luping; Hong, Tracie-Lynne; Yoon, Ilmi; Aragon, Sergio R.

    2004-12-01

    Proteins are long chains of amino acids that have a definite 3-d conformation and the shape of each protein is vital to its function. Since proteins are normally in solution, hydrodynamics (describes the movement of solvent around a protein as a function of shape and size of the molecule) can be used to probe the size and shape of proteins compared to those derived from X-ray crystallography. The computation chain needed for these hydrodynamics calculations consists of several separate programs by different authors on various platforms and often requires 3D visualizations of intermediate results. Due to the complexity, tools developed by a particular research group are not readily available for use by other groups, nor even by the non-experts within the same research group. To alleviate this situation, and to foment the easy and wide distribution of computational tools worldwide, we developed a web based interactive computational environment (WICE) including interactive 3D visualization that can be used with any web browser. Java based technologies were used to provide a platform neutral, user-friendly solution. Java Server Pages (JSP), Java Servlets, Java Beans, JOGL (Java bindings for OpenGL), and Java Web Start were used to create a solution that simplifies the computing chain for the user allowing the user to focus on their scientific research. WICE hides complexity from the user and provides robust and sophisticated visualization through a web browser.

  1. Inducer Hydrodynamic Load Measurement Devices

    NASA Technical Reports Server (NTRS)

    Skelley, Stephen E.; Zoladz, Thomas F.; Turner, Jim (Technical Monitor)

    2002-01-01

    Marshall Space Flight Center (MSFC) has demonstrated two measurement devices for sensing and resolving the hydrodynamic loads on fluid machinery. The first - a derivative of the six-component wind tunnel balance - senses the forces and moments on the rotating device through a weakened shaft section instrumented with a series of strain gauges. This rotating balance was designed to directly measure the steady and unsteady hydrodynamic loads on an inducer, thereby defining both the amplitude and frequency content associated with operating in various cavitation modes. The second device - a high frequency response pressure transducer surface mounted on a rotating component - was merely an extension of existing technology for application in water. MSFC has recently completed experimental evaluations of both the rotating balance and surface-mount transducers in a water test loop. The measurement bandwidth of the rotating balance was severely limited by the relative flexibility of the device itself, resulting in an unexpectedly low structural bending mode and invalidating the higher-frequency response data. Despite these limitations, measurements confirmed that the integrated loads on the four-bladed inducer respond to both cavitation intensity and cavitation phenomena. Likewise, the surface-mount pressure transducers were subjected to a range of temperatures and flow conditions in a non-rotating environment to record bias shifts and transfer functions between the transducers and a reference device. The pressure transducer static performance was within manufacturer's specifications and dynamic response accurately followed that of the reference.

  2. Hydrodynamics of Copepods: A Review

    NASA Astrophysics Data System (ADS)

    Jiang, Houshuo; Osborn, Thomas R.

    2004-07-01

    This paper reviews the hydrodynamics of copepods, guided by results obtained from recent theoretical and numerical studies of this topic to highlight the key concepts. First, we briefly summarize observational studies of the water flows (e.g., the feeding currents) created by copepods at their body scale. It is noticed that the water flows at individual copepod scale not only determine the net currents going around and through a copepod’s hair-bearing appendages but also set up a laminar flow field around the copepod. This laminar flow field interacts constantly with environmental background flows. Theoretically, we explain the creation of the laminar flow field in terms of the fact that a free-swimming copepod is a self-propelled body. This explanation is able to relate the various flow fields created by copepods to their complex swimming behaviors, and relevant results obtained from numerical simulations are summarized. Finally, we review the role of hydrodynamics in facilitating chemoreception and mechanoreception in copepods. As a conclusion, both past and current research suggests that the fluid mechanical phenomena occurring at copepod body scale play an important role in copepod feeding, sensing, swarming, mating, and predator avoidance.

  3. Hydromechanical transmission with hydrodynamic drive

    DOEpatents

    Orshansky, Jr., deceased, Elias; Weseloh, William E.

    1979-01-01

    This transmission has a first planetary gear assembly having first input means connected to an input shaft, first output means, and first reaction means, and a second planetary gear assembly having second input means connected to the first input means, second output means, and second reaction means connected directly to the first reaction means by a reaction shaft. First clutch means, when engaged, connect the first output means to an output shaft in a high driving range. A hydrodynamic drive is used; for example, a torque converter, which may or may not have a stationary case, has a pump connected to the second output means, a stator grounded by an overrunning clutch to the case, and a turbine connected to an output member, and may be used in a starting phase. Alternatively, a fluid coupling or other type of hydrodynamic drive may be used. Second clutch means, when engaged, for connecting the output member to the output shaft in a low driving range. A variable-displacement hydraulic unit is mechanically connected to the input shaft, and a fixed-displacement hydraulic unit is mechanically connected to the reaction shaft. The hydraulic units are hydraulically connected together so that when one operates as a pump the other acts as a motor, and vice versa. Both clutch means are connected to the output shaft through a forward-reverse shift arrangement. It is possible to lock out the torque converter after the starting phase is over.

  4. Radiation hydrodynamics including irradiation and adaptive mesh refinement with AZEuS. I. Methods

    NASA Astrophysics Data System (ADS)

    Ramsey, J. P.; Dullemond, C. P.

    2015-02-01

    Aims: The importance of radiation to the physical structure of protoplanetary disks cannot be understated. However, protoplanetary disks evolve with time, and so to understand disk evolution and by association, disk structure, one should solve the combined and time-dependent equations of radiation hydrodynamics. Methods: We implement a new implicit radiation solver in the AZEuS adaptive mesh refinement magnetohydrodynamics fluid code. Based on a hybrid approach that combines frequency-dependent ray-tracing for stellar irradiation with non-equilibrium flux limited diffusion, we solve the equations of radiation hydrodynamics while preserving the directionality of the stellar irradiation. The implementation permits simulations in Cartesian, cylindrical, and spherical coordinates, on both uniform and adaptive grids. Results: We present several hydrostatic and hydrodynamic radiation tests which validate our implementation on uniform and adaptive grids as appropriate, including benchmarks specifically designed for protoplanetary disks. Our results demonstrate that the combination of a hybrid radiation algorithm with AZEuS is an effective tool for radiation hydrodynamics studies, and produces results which are competitive with other astrophysical radiation hydrodynamics codes.

  5. Computer Code

    NASA Technical Reports Server (NTRS)

    1985-01-01

    COSMIC MINIVER, a computer code developed by NASA for analyzing aerodynamic heating and heat transfer on the Space Shuttle, has been used by Marquardt Company to analyze heat transfer on Navy/Air Force missile bodies. The code analyzes heat transfer by four different methods which can be compared for accuracy. MINIVER saved Marquardt three months in computer time and $15,000.

  6. Numerical prediction of hydrodynamic forces on a ship passing through a lock

    NASA Astrophysics Data System (ADS)

    Wang, Hong-zhi; Zou, Zao-jian

    2014-06-01

    While passing through a lock, a ship usually undergoes a steady forward motion at low speed. Owing to the size restriction of lock chamber, the shallow water and bank effects on the hydrodynamic forces acting on the ship may be remarkable, which may have an adverse effect on navigation safety. However, the complicated hydrodynamics is not yet fully understood. This paper focuses on the hydrodynamic forces acting on a ship passing through a lock. The unsteady viscous flow and hydrodynamic forces are calculated by applying an unsteady RANS code with a RNG k- ɛ turbulence model. User-defined function (UDF) is compiled to define the ship motion. Meanwhile, the grid regeneration is dealt with by using the dynamic mesh method and sliding interface technique. Numerical study is carried out for a bulk carrier ship passing through the Pierre Vandamme Lock in Zeebrugge at the model scale. The proposed method is validated by comparing the numerical results with the data of captive model tests. By analyzing the numerical results obtained at different speeds, water depths and eccentricities, the influences of speed, water depth and eccentricity on the hydrodynamic forces are illustrated. The numerical method proposed in this paper can qualitatively predict the ship-lock hydrodynamic interaction. It can provide certain guidance on the manoeuvring and control of ships passing through a lock.

  7. Out-of-Core Hydrodynamic Simulations of the IGM

    NASA Astrophysics Data System (ADS)

    Trac, H.; Pen, U.

    2003-12-01

    Probing the baryons in the intergalactic medium (IGM) through the Lyman alpha forest, the Sunyaev-Zeldovich effect, and the X-ray background is the next important task in cosmology. The evolution of the intergalactic medium is a numerically challenging problem to solve but advancements in hydrodynamic codes and computational techniques now make it tractable to simulate the IGM for the purpose of doing quantitative cosmology. We describe an out-of-core computing paradigm for very high-resolution simulations and a new code designed to handle the high Mach number dynamic range of the IGM. Out-of-core computation refers to the technique of using disk space as virtual memory and transferring data in and out of main memory at high I/O bandwidth. We present some results on the baryon budget and thermodynamic scaling relations from cosmological simulations with 20003 grid cells and 10003 dark matter particles.

  8. From the Sound of Erta Ale Lava Lake (Ethiopia) to Eruption Dynamics Into a Magma Reservoir

    NASA Astrophysics Data System (ADS)

    Bouche, E.; Vergniolle, S.

    2007-12-01

    The basaltic volcano of Erta Ale, located on the East African Rift, has a permanent lava lake whose behaviour presents similarity with a shallow magma reservoir. In March 2003, continuous measurements of acoustic pressure, images from video, temperature, seismicity and wind velocity were perfomed to quantify degassing of the lava lake in order to understand the eruptive behaviour of this volcano. The videos show that two types of gas bubbles break at the lava lake surface. Modelling acoustic pressure gives bubble overpressure and size. Bubbles are either large (radius 2 m) and overpressurised (4.104 Pa) or of intermediate size (radius 1 m) and weakly overpressurised (450 Pa). The large bubbles come from the conduit at the base of the lava lake whereas bubbles of intermediate size are produced by the destabilisation of a foam accumulated below the crust overlying the lava lake. Hence, their overpressure is related to capillary pressure of the rising small bubbles, suggesting that their diameter is 3.6 mm. The formation of bubbles of intermediate size is related to the local foam coalescence because of foam sluggish drainage. However, overpressure of intermediate size bubbles shows sudden peaks every eighteen hours, up to 6000 Pa. Each peak is related to a massive coalescence of a foam having reached its critical thickness. This involves a much larger number of bubbles than foam drainage, hence a much larger overpressure and energy. The rapid and massive coalescence leads to a sudden withdrawal of the foam. The disappearence of the foam suppress the buoyancy that sustained the cold and dense crust at the top of the lava lake, forcing the crust to sink. The average gas flux (6.10-3 m3s-1) is estimated over an eighteen-hour cycle from modelling the frequency of sound waves. Furthermore the diameter of the small bubbles deduced from the overpressure on synthetic waveforms can be combined with gas volume fraction observed on videos to estimate the gas flux between 3

  9. Seismic characteristics of variable convection at Erta ´Ale lava lake, Ethiopia

    NASA Astrophysics Data System (ADS)

    Jones, Joshua; Carniel, Roberto; Harris, Andrew J. L.; Malone, Steve

    2006-05-01

    The active summit lava lake of Erta ´Ale volcano, Ethiopia, offers a unique opportunity to study magma convection. In February 2002, we collected a multiparametric set of seismic, thermal and video data. These data indicate that the lake cycled between periods characterized by low (0.01-0.08 m s - 1 ) and high (0.1-0.4 m s - 1 ) convection rates, typically lasting tens to hundreds of minutes. Three seismometers placed around the active crater recorded continuous tremor with a dominant frequency of 2 Hz, and energy at frequencies from 0.8 to 12 Hz. Here, we characterize the seismic signature of each regime by its spectral content, wavefield polarization, and tremor source location. For both regimes, the wavefield is mostly rectilinear. Azimuths and incidence angles are consistent with P waves originating in one of two locations: the north edge of the active lava lake, or a region 100-150 m ENE of the lava lake. Because both regimes are dominated by a low frequency, rectilinearly polarized wavefield, we investigate the source location using a method that solves for location and isotropic source power by a weighted least-squares amplitude-based inversion of seismic data. We find that tremor source regions are unique to each convective regime, although some location overlap exists when tremor is located in short time windows. Wavefield composition suggests that the convective phases may share a common source process, but their differing locations indicate that either the source region is non-stationary, or a second source skews the location during the high convective phase. Tremor polarization and location suggests that the low-frequency tremor is caused by bubble coalescence and bursting in a conduit whose surface is the lava lake. The higher frequency signal associated with the high convective regime is associated with a scattered, more complex wavefield superimposed on the low-frequency background tremor, caused by bubble bursting and cracking of cooled crust at

  10. DNA codes

    SciTech Connect

    Torney, D. C.

    2001-01-01

    We have begun to characterize a variety of codes, motivated by potential implementation as (quaternary) DNA n-sequences, with letters denoted A, C The first codes we studied are the most reminiscent of conventional group codes. For these codes, Hamming similarity was generalized so that the score for matched letters takes more than one value, depending upon which letters are matched [2]. These codes consist of n-sequences satisfying an upper bound on the similarities, summed over the letter positions, of distinct codewords. We chose similarity 2 for matches of letters A and T and 3 for matches of the letters C and G, providing a rough approximation to double-strand bond energies in DNA. An inherent novelty of DNA codes is 'reverse complementation'. The latter may be defined, as follows, not only for alphabets of size four, but, more generally, for any even-size alphabet. All that is required is a matching of the letters of the alphabet: a partition into pairs. Then, the reverse complement of a codeword is obtained by reversing the order of its letters and replacing each letter by its match. For DNA, the matching is AT/CG because these are the Watson-Crick bonding pairs. Reversal arises because two DNA sequences form a double strand with opposite relative orientations. Thus, as will be described in detail, because in vitro decoding involves the formation of double-stranded DNA from two codewords, it is reasonable to assume - for universal applicability - that the reverse complement of any codeword is also a codeword. In particular, self-reverse complementary codewords are expressly forbidden in reverse-complement codes. Thus, an appropriate distance between all pairs of codewords must, when large, effectively prohibit binding between the respective codewords: to form a double strand. Only reverse-complement pairs of codewords should be able to bind. For most applications, a DNA code is to be bi-partitioned, such that the reverse-complementary pairs are separated

  11. Hydrodynamics, Fungal Physiology, and Morphology.

    PubMed

    Serrano-Carreón, L; Galindo, E; Rocha-Valadéz, J A; Holguín-Salas, A; Corkidi, G

    2015-01-01

    Filamentous cultures, such as fungi and actinomycetes, contribute substantially to the pharmaceutical industry and to enzyme production, with an annual market of about 6 billion dollars. In mechanically stirred reactors, most frequently used in fermentation industry, microbial growth and metabolite productivity depend on complex interactions between hydrodynamics, oxygen transfer, and mycelial morphology. The dissipation of energy through mechanically stirring devices, either flasks or tanks, impacts both microbial growth through shearing forces on the cells and the transfer of mass and energy, improving the contact between phases (i.e., air bubbles and microorganisms) but also causing damage to the cells at high energy dissipation rates. Mechanical-induced signaling in the cells triggers the molecular responses to shear stress; however, the complete mechanism is not known. Volumetric power input and, more importantly, the energy dissipation/circulation function are the main parameters determining mycelial size, a phenomenon that can be explained by the interaction of mycelial aggregates and Kolmogorov eddies. The use of microparticles in fungal cultures is also a strategy to increase process productivity and reproducibility by controlling fungal morphology. In order to rigorously study the effects of hydrodynamics on the physiology of fungal microorganisms, it is necessary to rule out the possible associated effects of dissolved oxygen, something which has been reported scarcely. At the other hand, the processes of phase dispersion (including the suspended solid that is the filamentous biomass) are crucial in order to get an integral knowledge about biological and physicochemical interactions within the bioreactor. Digital image analysis is a powerful tool for getting relevant information in order to establish the mechanisms of mass transfer as well as to evaluate the viability of the mycelia. This review focuses on (a) the main characteristics of the two most

  12. Type I X-ray burst simulation code

    2007-07-01

    dAGILE is an astrophysical code that simulates accretion of matter onto a neutron star and the subsequent x-ray burst. It is a one-dimensional time-dependent spherically symmetric code with generalized nuclear reaction networks, diffusive radiation/conduction, realistic boundary conditions, and general relativistic hydrodynamics. The code is described in more detail in Astrophysical Journal 650(2006)332 and Astrophysical Journal Supplements 174(2008)261.

  13. Application of CHAD hydrodynamics to shock-wave problems

    SciTech Connect

    Trease, H.E.; O`Rourke, P.J.; Sahota, M.S.

    1997-12-31

    CHAD is the latest in a sequence of continually evolving computer codes written to effectively utilize massively parallel computer architectures and the latest grid generators for unstructured meshes. Its applications range from automotive design issues such as in-cylinder and manifold flows of internal combustion engines, vehicle aerodynamics, underhood cooling and passenger compartment heating, ventilation, and air conditioning to shock hydrodynamics and materials modeling. CHAD solves the full unsteady Navier-Stoke equations with the k-epsilon turbulence model in three space dimensions. The code has four major features that distinguish it from the earlier KIVA code, also developed at Los Alamos. First, it is based on a node-centered, finite-volume method in which, like finite element methods, all fluid variables are located at computational nodes. The computational mesh efficiently and accurately handles all element shapes ranging from tetrahedra to hexahedra. Second, it is written in standard Fortran 90 and relies on automatic domain decomposition and a universal communication library written in standard C and MPI for unstructured grids to effectively exploit distributed-memory parallel architectures. Thus the code is fully portable to a variety of computing platforms such as uniprocessor workstations, symmetric multiprocessors, clusters of workstations, and massively parallel platforms. Third, CHAD utilizes a variable explicit/implicit upwind method for convection that improves computational efficiency in flows that have large velocity Courant number variations due to velocity of mesh size variations. Fourth, CHAD is designed to also simulate shock hydrodynamics involving multimaterial anisotropic behavior under high shear. The authors will discuss CHAD capabilities and show several sample calculations showing the strengths and weaknesses of CHAD.

  14. A moving frame algorithm for high Mach number hydrodynamics

    NASA Astrophysics Data System (ADS)

    Trac, Hy; Pen, Ue-Li

    2004-07-01

    We present a new approach to Eulerian computational fluid dynamics that is designed to work at high Mach numbers encountered in astrophysical hydrodynamic simulations. Standard Eulerian schemes that strictly conserve total energy suffer from the high Mach number problem and proposed solutions to additionally solve the entropy or thermal energy still have their limitations. In our approach, the Eulerian conservation equations are solved in an adaptive frame moving with the fluid where Mach numbers are minimized. The moving frame approach uses a velocity decomposition technique to define local kinetic variables while storing the bulk kinetic components in a smoothed background velocity field that is associated with the grid velocity. Gravitationally induced accelerations are added to the grid, thereby minimizing the spurious heating problem encountered in cold gas flows. Separately tracking local and bulk flow components allows thermodynamic variables to be accurately calculated in both subsonic and supersonic regions. A main feature of the algorithm, that is not possible in previous Eulerian implementations, is the ability to resolve shocks and prevent spurious heating where both the pre-shock and post-shock fluid are supersonic. The hybrid algorithm combines the high-resolution shock capturing ability of the second-order accurate Eulerian TVD scheme with a low-diffusion Lagrangian advection scheme. We have implemented a cosmological code where the hydrodynamic evolution of the baryons is captured using the moving frame algorithm while the gravitational evolution of the collisionless dark matter is tracked using a particle-mesh N-body algorithm. Hydrodynamic and cosmological tests are described and results presented. The current code is fast, memory-friendly, and parallelized for shared-memory machines.

  15. Relativistic Hydrodynamics for Heavy-Ion Collisions

    ERIC Educational Resources Information Center

    Ollitrault, Jean-Yves

    2008-01-01

    Relativistic hydrodynamics is essential to our current understanding of nucleus-nucleus collisions at ultrarelativistic energies (current experiments at the Relativistic Heavy Ion Collider, forthcoming experiments at the CERN Large Hadron Collider). This is an introduction to relativistic hydrodynamics for graduate students. It includes a detailed…

  16. Hydrodynamic description for ballistic annihilation systems

    SciTech Connect

    Garcia de Soria, Maria Isabel; Trizac, Emmanuel; Maynar, Pablo; Schehr, Gregory; Barrat, Alain

    2009-01-21

    The problem of the validity of a hydrodynamic description for a system in which there are no collisional invariants is addressed. Hydrodynamic equations have been derived and successfully tested against simulation data for a system where particles annihilate with a probability p, or collide elastically otherwise. The response of the system to a linear perturbation is analyzed as well.

  17. Update on Thermal and Hydrodynamic Simulations on LMJ Cryogenic Targets

    SciTech Connect

    Moll, G.; Charton, S.

    2004-03-15

    The temperature of the cryogenic target inside the hohlraum has been studied with a computational fluid dynamics code (FLUENT). Specific models have been developed and used for both thermal and hydrodynamic calculations.With thermal calculations only, we first have found the optimum heat flux required to counteract the effect of the laser entrance windows. This heat flux is centered on the hohlraum wall along the axis of revolution. With this heat flux, the temperature surface profiles of the capsule and the DT ice layer have been significantly reduced. Second, the sensitivity of the target temperature profiles (capsule and DT layer) relatively to capsule displacement has been determined. Thirdly, the effect of the shield extraction (shield surrounding the cryogenic structure) has been studied and has indicated that the target lifetime before the laser shot is less than 1s. Meanwhile, with hydrodynamic simulations, we have investigated the surface temperature profiles alteration due to He and H{sub 2} mixture convection within the hohlraum.In order to find out the variations between different configurations, results of these studies are given with seven significant digit outputs. Those results only indicate a trend because of the material's properties incertitude and the code approximation.

  18. Tecolote: An Object-Oriented Framework for Hydrodynamics Physics

    SciTech Connect

    Holian, K.S.; Ankeny, L.A.; Clancy, S.P.; Hall, J.H.; Marshall, J.C.; McNamara, G.R.; Painter, J.W.; Zander, M.E.

    1997-12-31

    Tecolote is an object-oriented framework for both developing and accessing a variety of hydrodynamics models. It is written in C++, and is in turn built on another framework - Parallel Object-Oriented Methods and Applications (POOMA). The Tecolote framework is meant to provide modules (or building blocks) to put together hydrodynamics applications that can encompass a wide variety of physics models, numerical solution options, and underlying data storage schemes, although with only those modules activated at runtime that are necessary. Tecolote has been designed to separate physics from computer science, as much as humanly possible. The POOMA framework provides fields in C++ to Tecolote that are analogous to Fortran-9O-like arrays in the way that they are used, but that, in addition, have underlying load balancing, message passing, and a special scheme for compact data storage. The POOMA fields can also have unique meshes associated with them that can allow more options than just the normal regularly-spaced Cartesian mesh. They also permit one-, two, and three-dimensions to be immediately accessible to the code developer and code user.

  19. Verification for ALEGRA using magnetized shock hydrodynamics problems.

    SciTech Connect

    Rider, William J.; Niederhaus, John H.; Robinson, Allen Conrad; Gardiner, Thomas Anthony

    2008-10-01

    Two classical verification problems from shock hydrodynamics are adapted for verification in the context of ideal magnetohydrodynamics (MHD) by introducing strong transverse magnetic fields, and simulated using the finite element Lagrange-remap MHD code ALEGRA for purposes of rigorous code verification. The concern in these verification tests is that inconsistencies related to energy advection are inherent in Lagrange-remap formulations for MHD, such that conservation of the kinetic and magnetic components of the energy may not be maintained. Hence, total energy conservation may also not be maintained. MHD shock propagation may therefore not be treated consistently in Lagrange-remap schemes, as errors in energy conservation are known to result in unphysical shock wave speeds and post-shock states. That kinetic energy is not conserved in Lagrange-remap schemes is well known, and the correction of DeBar has been shown to eliminate the resulting errors. Here, the consequences of the failure to conserve magnetic energy are revealed using order verification in the two magnetized shock-hydrodynamics problems. Further, a magnetic analog to the DeBar correction is proposed and its accuracy evaluated using this verification testbed. Results indicate that only when the total energy is conserved, by implementing both the kinetic and magnetic components of the DeBar correction, can simulations in Lagrange-remap formulation capture MHD shock propagation accurately. Additional insight is provided by the verification results, regarding the implementation of the DeBar correction and the advection scheme.

  20. Hydrodynamic model for drying emulsions

    NASA Astrophysics Data System (ADS)

    Feng, Huanhuan; Sprakel, Joris; van der Gucht, Jasper

    2015-08-01

    We present a hydrodynamic model for film formation in a dense oil-in-water emulsion under a unidirectional drying stress. Water flow through the plateau borders towards the drying end leads to the buildup of a pressure gradient. When the local pressure exceeds the critical disjoining pressure, the water films between droplets break and the droplets coalesce. We show that, depending on the critical pressure and the evaporation rate, the coalescence can occur in two distinct modes. At low critical pressures and low evaporation rates, coalescence occurs throughout the sample, whereas at high critical pressures and high evaporation rate, coalescence occurs only at the front. In the latter case, an oil layer develops on top of the film, which acts as a diffusive barrier and slows down film formation. Our findings, which are summarized in a state diagram for film formation, are in agreement with recent experimental findings.

  1. Anomalous hydrodynamics kicks neutron stars

    NASA Astrophysics Data System (ADS)

    Kaminski, Matthias; Uhlemann, Christoph F.; Bleicher, Marcus; Schaffner-Bielich, Jürgen

    2016-09-01

    Observations show that, at the beginning of their existence, neutron stars are accelerated briskly to velocities of up to a thousand kilometers per second. We argue that this remarkable effect can be explained as a manifestation of quantum anomalies on astrophysical scales. To theoretically describe the early stage in the life of neutron stars we use hydrodynamics as a systematic effective-field-theory framework. Within this framework, anomalies of the Standard Model of particle physics as underlying microscopic theory imply the presence of a particular set of transport terms, whose form is completely fixed by theoretical consistency. The resulting chiral transport effects in proto-neutron stars enhance neutrino emission along the internal magnetic field, and the recoil can explain the order of magnitude of the observed kick velocities.

  2. Hydrodynamics and phases of flocks

    SciTech Connect

    Toner, John; Tu Yuhai . E-mail: yuhai@us.ibm.com; Ramaswamy, Sriram

    2005-07-01

    We review the past decade's theoretical and experimental studies of flocking: the collective, coherent motion of large numbers of self-propelled 'particles' (usually, but not always, living organisms). Like equilibrium condensed matter systems, flocks exhibit distinct 'phases' which can be classified by their symmetries. Indeed, the phases that have been theoretically studied to date each have exactly the same symmetry as some equilibrium phase (e.g., ferromagnets, liquid crystals). This analogy with equilibrium phases of matter continues in that all flocks in the same phase, regardless of their constituents, have the same 'hydrodynamic'-that is, long-length scale and long-time behavior, just as, e.g., all equilibrium fluids are described by the Navier-Stokes equations. Flocks are nonetheless very different from equilibrium systems, due to the intrinsically nonequilibrium self-propulsion of the constituent 'organisms'. This difference between flocks and equilibrium systems is most dramatically manifested in the ability of the simplest phase of a flock, in which all the organisms are, on average moving in the same direction (we call this a 'ferromagnetic' flock; we also use the terms 'vector-ordered' and 'polar-ordered' for this situation) to exist even in two dimensions (i.e., creatures moving on a plane), in defiance of the well-known Mermin-Wagner theorem of equilibrium statistical mechanics, which states that a continuous symmetry (in this case, rotation invariance, or the ability of the flock to fly in any direction) can not be spontaneously broken in a two-dimensional system with only short-ranged interactions. The 'nematic' phase of flocks, in which all the creatures move preferentially, or are simply oriented preferentially, along the same axis, but with equal probability of moving in either direction, also differs dramatically from its equilibrium counterpart (in this case, nematic liquid crystals). Specifically, it shows enormous number fluctuations, which

  3. Radiation hydrodynamics in solar flares

    SciTech Connect

    Fisher, G.H.

    1985-10-18

    Solar flares are rather violent and extremely complicated phenomena, and it should be made clear at the outset that a physically complete picture describing all aspects of flares does not exist. From the wealth of data which is available, it is apparent that many different types of physical processes are involved during flares: energetic particle acceleration, rapid magnetohydrodynamic motion of complex field structures, magnetic reconnection, violent mass motion along magnetic field lines, and the heating of plasma to tens of millions of degrees, to name a few. The goal of this paper is to explore just one aspect of solar flares, namely, the interaction of hydrodynamics and radiation processes in fluid being rapidly heated along closed magnetic field lines. The models discussed are therefore necessarily restrictive, and will address only a few of the observed or observable phenomena. 46 refs., 6 figs.

  4. Hydrodynamic assembly for Fast Ignition

    NASA Astrophysics Data System (ADS)

    Tabak, Max; Clark, Daniel; Town, Richard; Hatchett, Stephen

    2007-11-01

    We present directly and indirectly driven implosion designs for Fast Ignition. Directly driven designs using various laser illumination wavelengths are described. We compare these designs with simple hydrodynamic efficiency models. Capsules illuminated with less than 1 MJ of light with perfect zooming at low intensity and low contrast ratio in power can assemble 4 mg of fuel to column density in excess of 3 g/cm^2. We contrast these designs with more optimized designs that lead to Guderley-style self similar implosions. Indirectly driven capsules absorbing 75 kJ of xrays can assemble 0.7 mg to column density 2.7 g/cm^2 in 1D simulations. We describe 2-D simulations including both capsules and attached cones driven by radiation. We describe issues in assembling fuel near the cone tip and cone disruption.

  5. Isotope (Sr, Nd, Pb, O) and trace-element geochemistry of volcanics from the Erta'Ale range (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Barrat, J. A.; Fourcade, S.; Jahn, B. M.; Cheminée, J. L.; Capdevila, R.

    1998-01-01

    The Erta'Ale range is the most important axial volcanic chain of the Afar region. The petrographic diversity of lavas erupted in this area is very important, ranging from magnesian transitional basalts to rhyolites. The variation in isotopic compositions and incompatible element ratios in the basalts (e.g., ɛNd = +4.5 to +7.5, ( {La}/{Yb}) n = 2.5 to 11) demonstrates the heterogeneous character for their mantle sources. Such heterogeneity can be interpreted by the participation of two mantle reservoirs: a depleted MORB and a HIMU OIB-type sources. These reservoirs are indistinguishable from those recently identified in the southern part of the Red Sea region. The isotopic data indicate that the contribution of continental sialic components is not significant in the petrogenesis of the volcanic rocks. Our data further suggest that the crust beneath the Erta'Ale volcanic range is not a thinned (Pan-african?) sialic crust, but could be gabbroic in nature. The acid volcanics have originated mostly through fractional crystallisation of basaltic magmas as revealed from major- and trace-element data and from the relatively homogeneous Sr and Nd isotopic ratios. However, the δ18O variation in the acid lavas suggests an important contribution from a low δ18O component in the petrogenesis of some low δ 18O acid lavas.

  6. The role of large bubbles detected from acoustic measurements on the dynamics of Erta 'Ale lava lake (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Bouche, E.; Vergniolle, S.; Staudacher, T.; Nercessian, A.; Delmont, J.-C.; Frogneux, M.; Cartault, F.; Le Pichon, A.

    2010-06-01

    The activity at the surface of the lava lake on Erta 'Ale volcano (Ethiopia) shows that large bubbles are regularly breaking at a fixed position on the lava lake. This is also where the small lava fountains are sometimes produced. Since this location is likely to be directly above the volcanic conduit feeding the lava lake, we have done continuous measurements between March 22 and 26, 2003 to understand the degassing of a volcano in permanent activity. The bubble size has been first estimated from videos, which once combined with the acoustic pressure, can constrain the source of the sound. The gas volume and overpressure stayed roughly constant, between 36-700 m3 and 4 × 103-1.8 × 104 Pa, respectively. Simultaneous thermal measurements showed regular peaks, which occurred when the crust was broken by a large bubble, hence gave a direct indication on the typical return time between the bubbles (1 h). These spherical cap bubbles had a high Reynolds number, 4600-20000, therefore a wake, periodically unstable, formed and detached from the bubble bottom. The bubbly wake, if the detachment occurs close to the surface, can explain the duration of lava fountains, measured on the videos. The periodic arrival of bubbly wakes, which mostly detach from the driving spherical cap within the lava lake, could explain the absence of cooling at Erta 'Ale, Erebus (Antartica), Villarica (Chile) and Nyiragongo (Democratic Republic of Congo) without invoking a convective downflow of magma in the conduit, as previously done.

  7. Long-term simulation of large deformation, mechano-chemical fluid-structure interactions in ALE and fully Eulerian coordinates

    NASA Astrophysics Data System (ADS)

    Frei, S.; Richter, T.; Wick, T.

    2016-09-01

    In this work, we develop numerical schemes for mechano-chemical fluid-structure interactions with long-term effects. We investigate a model of a growing solid interacting with an incompressible fluid. A typical example for such a situation is the formation and growth of plaque in blood vessels. This application includes two particular difficulties: First, growth may lead to very large deformations, up to full clogging of the fluid domain. We derive a simplified set of equations including a fluid-structure interaction system coupled to an ODE model for plaque growth in Arbitrary Lagrangian Eulerian (ALE) coordinates and in Eulerian coordinates. The latter novel technique is capable of handling very large deformations up to contact. The second difficulty stems from the different time scales: while the dynamics of the fluid demand to resolve a scale of seconds, growth typically takes place in a range of months. We propose a temporal two-scale approach using local small-scale problems to compute an effective wall stress that will enter a long-scale problem. Our proposed techniques are substantiated with several numerical tests that include comparisons of the Eulerian and ALE approaches as well as convergence studies.

  8. Parsing the neural correlates of moral cognition: ALE meta-analysis on morality, theory of mind, and empathy.

    PubMed

    Bzdok, Danilo; Schilbach, Leonhard; Vogeley, Kai; Schneider, Karla; Laird, Angela R; Langner, Robert; Eickhoff, Simon B

    2012-10-01

    Morally judicious behavior forms the fabric of human sociality. Here, we sought to investigate neural activity associated with different facets of moral thought. Previous research suggests that the cognitive and emotional sources of moral decisions might be closely related to theory of mind, an abstract-cognitive skill, and empathy, a rapid-emotional skill. That is, moral decisions are thought to crucially refer to other persons' representation of intentions and behavioral outcomes as well as (vicariously experienced) emotional states. We thus hypothesized that moral decisions might be implemented in brain areas engaged in 'theory of mind' and empathy. This assumption was tested by conducting a large-scale activation likelihood estimation (ALE) meta-analysis of neuroimaging studies, which assessed 2,607 peak coordinates from 247 experiments in 1,790 participants. The brain areas that were consistently involved in moral decisions showed more convergence with the ALE analysis targeting theory of mind versus empathy. More specifically, the neurotopographical overlap between morality and empathy disfavors a role of affective sharing during moral decisions. Ultimately, our results provide evidence that the neural network underlying moral decisions is probably domain-global and might be dissociable into cognitive and affective sub-systems. PMID:22270812

  9. Effect of Surface Roughness on Hydrodynamic Bearings

    NASA Technical Reports Server (NTRS)

    Majumdar, B. C.; Hamrock, B. J.

    1981-01-01

    A theoretical analysis on the performance of hydrodynamic oil bearings is made considering surface roughness effect. The hydrodynamic as well as asperity contact load is found. The contact pressure was calculated with the assumption that the surface height distribution was Gaussian. The average Reynolds equation of partially lubricated surface was used to calculate hydrodynamic load. An analytical expression for average gap was found and was introduced to modify the average Reynolds equation. The resulting boundary value problem was then solved numerically by finite difference methods using the method of successive over relaxation. The pressure distribution and hydrodynamic load capacity of plane slider and journal bearings were calculated for various design data. The effects of attitude and roughness of surface on the bearing performance were shown. The results are compared with similar available solution of rough surface bearings. It is shown that: (1) the contribution of contact load is not significant; and (2) the hydrodynamic and contact load increase with surface roughness.

  10. Stellar Explosions: Hydrodynamics and Nucleosynthesis

    NASA Astrophysics Data System (ADS)

    José, Jordi

    2015-12-01

    Stars are the main factories of element production in the universe through a suite of complex and intertwined physical processes. Such stellar alchemy is driven by multiple nuclear interactions that through eons have transformed the pristine, metal-poor ashes leftover by the Big Bang into a cosmos with 100 distinct chemical species. The products of stellar nucleosynthesis frequently get mixed inside stars by convective transport or through hydrodynamic instabilities, and a fraction of them is eventually ejected into the interstellar medium, thus polluting the cosmos with gas and dust. The study of the physics of the stars and their role as nucleosynthesis factories owes much to cross-fertilization of different, somehow disconnected fields, ranging from observational astronomy, computational astrophysics, and cosmochemistry to experimental and theoretical nuclear physics. Few books have simultaneously addressed the multidisciplinary nature of this field in an engaging way suitable for students and young scientists. Providing the required multidisciplinary background in a coherent way has been the driving force for Stellar Explosions: Hydrodynamics and Nucleosynthesis. Written by a specialist in stellar astrophysics, this book presents a rigorous but accessible treatment of the physics of stellar explosions from a multidisciplinary perspective at the crossroads of computational astrophysics, observational astronomy, cosmochemistry, and nuclear physics. Basic concepts from all these different fields are applied to the study of classical and recurrent novae, type I and II supernovae, X-ray bursts and superbursts, and stellar mergers. The book shows how a multidisciplinary approach has been instrumental in our understanding of nucleosynthesis in stars, particularly during explosive events.

  11. The hydrodynamics of dolphin drafting

    PubMed Central

    Weihs, Daniel

    2004-01-01

    Background Drafting in cetaceans is defined as the transfer of forces between individuals without actual physical contact between them. This behavior has long been surmised to explain how young dolphin calves keep up with their rapidly moving mothers. It has recently been observed that a significant number of calves become permanently separated from their mothers during chases by tuna vessels. A study of the hydrodynamics of drafting, initiated in the hope of understanding the mechanisms causing the separation of mothers and calves during fishing-related activities, is reported here. Results Quantitative results are shown for the forces and moments around a pair of unequally sized dolphin-like slender bodies. These include two major effects. First, the so-called Bernoulli suction, which stems from the fact that the local pressure drops in areas of high speed, results in an attractive force between mother and calf. Second is the displacement effect, in which the motion of the mother causes the water in front to move forwards and radially outwards, and water behind the body to move forwards to replace the animal's mass. Thus, the calf can gain a 'free ride' in the forward-moving areas. Utilizing these effects, the neonate can gain up to 90% of the thrust needed to move alongside the mother at speeds of up to 2.4 m/sec. A comparison with observations of eastern spinner dolphins (Stenella longirostris) is presented, showing savings of up to 60% in the thrust that calves require if they are to keep up with their mothers. Conclusions A theoretical analysis, backed by observations of free-swimming dolphin schools, indicates that hydrodynamic interactions with mothers play an important role in enabling dolphin calves to keep up with rapidly moving adult school members. PMID:15132740

  12. Hydrodynamics of explosion: models and software for modeling explosions and estimation of their consequences

    NASA Astrophysics Data System (ADS)

    Stepanov, K. L.; Stankevich, Y. A.; Smetannikov, A. S.

    2012-11-01

    Physical and hydrodynamic processes accompanying explosions of condensed explosives and fuel-air mixtures have been considered. Wide-range equations of state of explosion products and air have been used. A physical model and a program code based on the gas dynamics equations in the Lagrangian form have been developed for modeling one-dimensional hydrodynamic processes in the near zone of explosion. This firmware forms the basis for estimation of explosion consequences. The described model has shown its working efficiency within a wide range of explosion energies and environmental conditions.

  13. Particle Hydrodynamics with Material Strength for Multi-Layer Orbital Debris Shield Design

    NASA Technical Reports Server (NTRS)

    Fahrenthold, Eric P.

    1999-01-01

    Three dimensional simulation of oblique hypervelocity impact on orbital debris shielding places extreme demands on computer resources. Research to date has shown that particle models provide the most accurate and efficient means for computer simulation of shield design problems. In order to employ a particle based modeling approach to the wall plate impact portion of the shield design problem, it is essential that particle codes be augmented to represent strength effects. This report describes augmentation of a Lagrangian particle hydrodynamics code developed by the principal investigator, to include strength effects, allowing for the entire shield impact problem to be represented using a single computer code.

  14. Exploring spiral galaxy potentials with hydrodynamical simulations

    NASA Astrophysics Data System (ADS)

    Slyz, Adrianne D.; Kranz, Thilo; Rix, Hans-Walter

    2003-12-01

    We study how well the complex gas velocity fields induced by massive spiral arms are modelled by the hydrodynamical simulations that we used recently to constrain the dark matter fraction in nearby spiral galaxies. More specifically, we explore the dependence of the positions and amplitudes of features in the gas flow on the temperature of the interstellar medium (assumed to behave as a one-component isothermal fluid), the non-axisymmetric disc contribution to the galactic potential, the pattern speed Ωp, and finally the numerical resolution of the simulation. We argue that, after constraining the pattern speed reasonably well by matching the simulations to the observed spiral arm morphology, the amplitude of the non-axisymmetric perturbation (the disc fraction) is left as the primary parameter determining the gas dynamics. However, owing to the sensitivity of the positions of the shocks to modelling parameters, one has to be cautious when quantitatively comparing the simulations to observations. In particular, we show that a global least-squares analysis is not the optimal method for distinguishing different models, as it tends to slightly favour low disc fraction models. Nevertheless, we conclude that, given observational data of reasonably high spatial resolution and an accurate shock-resolving hydro-code, this method tightly constrains the dark matter content within spiral galaxies. We further argue that, even if the perturbations induced by spiral arms are weaker than those of strong bars, they are better suited for this kind of analysis because the spiral arms extend to larger radii where effects like inflows due to numerical viscosity and morphological dependence on gas sound speed are less of a concern than they are in the centres of discs.

  15. A 3D finite element ALE method using an approximate Riemann solution

    DOE PAGESBeta

    Chiravalle, V. P.; Morgan, N. R.

    2016-08-09

    Arbitrary Lagrangian–Eulerian finite volume methods that solve a multidimensional Riemann-like problem at the cell center in a staggered grid hydrodynamic (SGH) arrangement have been proposed. This research proposes a new 3D finite element arbitrary Lagrangian–Eulerian SGH method that incorporates a multidimensional Riemann-like problem. Here, two different Riemann jump relations are investigated. A new limiting method that greatly improves the accuracy of the SGH method on isentropic flows is investigated. A remap method that improves upon a well-known mesh relaxation and remapping technique in order to ensure total energy conservation during the remap is also presented. Numerical details and test problemmore » results are presented.« less

  16. Final Report for "Verification and Validation of Radiation Hydrodynamics for Astrophysical Applications"

    SciTech Connect

    Zingale, M; Howell, L H

    2010-03-17

    The motivation for this work is to gain experience in the methodology of verification and validation (V&V) of astrophysical radiation hydrodynamics codes. In the first period of this work, we focused on building the infrastructure to test a single astrophysical application code, Castro, developed in collaboration between Lawrence Livermore National Laboratory (LLNL) and Lawrence Berkeley Laboratory (LBL). We delivered several hydrodynamic test problems, in the form of coded initial conditions and documentation for verification, routines to perform data analysis, and a generalized regression test suite to allow for continued automated testing. Astrophysical simulation codes aim to model phenomena that elude direct experimentation. Our only direct information about these systems comes from what we observe, and may be transient. Simulation can help further our understanding by allowing virtual experimentation of these systems. However, to have confidence in our simulations requires us to have confidence in the tools we use. Verification and Validation is a process by which we work to build confidence that a simulation code is accurately representing reality. V&V is a multistep process, and is never really complete. Once a single test problem is working as desired (i.e. that problem is verified), one wants to ensure that subsequent code changes do not break that test. At the same time, one must also search for new verification problems that test the code in a new way. It can be rather tedious to manually retest each of the problems, so before going too far with V&V, it is desirable to have an automated test suite. Our project aims to provide these basic tools for astrophysical radiation hydrodynamics codes.

  17. Simulating hydrodynamics on tidal mudflats

    NASA Astrophysics Data System (ADS)

    Cook, S.; Lippmann, T. C.

    2014-12-01

    Biogeochemical cycling in estuaries is governed by fluxes from both riverine sources and through estuarine sediment deposits. Although estimates from river sources are relatively common and easily sampled, estimates of nutrient fluxes through the fluid-sediment interface are less common and limited to deeper portions of the bays away from intertidal areas. Lack of quantifiable shear stress estimates over intertidal areas limits our overall understanding of nutrient budgets in estuaries. Unfortunately, observation of intertidal hydrodynamics and nutrient fluxes over tidal flats and near the water's edge is difficult owing to the temporally varying and spatially extensive region where the tides inundate, and thus numerical modeling is often employed. In this work, the Regional Ocean Modeling System (ROMS), a three dimensional numerical hydrodynamic model was used to investigate the shear stresses over intertidal mudflats in the Great Bay, a tidally-dominated New England estuary cut by several tidal channels and with over 50% of the estuary exposed at low tide. The ROMS wetting and drying scheme was used to simulate the rising and falling tide on the flats, a successful approach adapted in other regions of the world but not always inclusive of tidal channels. Bathymetric data obtained in 2009 and 2013 was used to define the model grid. Predicted tides are forced at Adam's Pt., a natural constriction in the estuary about 20 km upstream of the mouth and at the entrance to the Great Bay. Of particular interest are fluxes of material on-to and off-of the tidal flats which contribute to water quality conditions in the estuary, and are largely governed by shear stresses that drive nutrient fluxes at the fluid-sediment interface. Basin wide estimates of near-bottom shear stresses can be used to estimate first order nutrient fluxes over a tidal cycle and hence describe general biogeochemical dynamics of the estuary. Future work will include enhanced forcing of currents by

  18. Non abelian hydrodynamics and heavy ion collisions

    SciTech Connect

    Calzetta, E.

    2014-01-14

    The goal of the relativistic heavy ion collisions (RHIC) program is to create a state of matter where color degrees of freedom are deconfined. The dynamics of matter in this state, in spite of the complexities of quantum chromodynamics, is largely determined by the conservation laws of energy momentum and color currents. Therefore it is possible to describe its main features in hydrodynamic terms, the very short color neutralization time notwithstanding. In this lecture we shall give a simple derivation of the hydrodynamics of a color charged fluid, by generalizing the usual derivation of hydrodynamics from kinetic theory to the non abelian case.

  19. Nonlinear waves in second order conformal hydrodynamics

    NASA Astrophysics Data System (ADS)

    Fogaça, D. A.; Marrochio, H.; Navarra, F. S.; Noronha, J.

    2015-02-01

    In this work we study wave propagation in dissipative relativistic fluids described by a simplified set of the 2nd order viscous conformal hydrodynamic equations corresponding to Israel-Stewart theory. Small amplitude waves are studied within the linearization approximation while waves with large amplitude are investigated using the reductive perturbation method, which is generalized to the case of 2nd order relativistic hydrodynamics. Our results indicate the presence of a "soliton-like" wave solution in Israel-Stewart hydrodynamics despite the presence of dissipation and relaxation effects.

  20. Survey of Multi-Material Closure Models in 1D Lagrangian Hydrodynamics

    SciTech Connect

    Maeng, Jungyeoul Brad; Hyde, David Andrew Bulloch

    2015-07-28

    Accurately treating the coupled sub-cell thermodynamics of computational cells containing multiple materials is an inevitable problem in hydrodynamics simulations, whether due to initial configurations or evolutions of the materials and computational mesh. When solving the hydrodynamics equations within a multi-material cell, we make the assumption of a single velocity field for the entire computational domain, which necessitates the addition of a closure model to attempt to resolve the behavior of the multi-material cells’ constituents. In conjunction with a 1D Lagrangian hydrodynamics code, we present a variety of both the popular as well as more recently proposed multi-material closure models and survey their performances across a spectrum of examples. We consider standard verification tests as well as practical examples using combinations of fluid, solid, and composite constituents within multi-material mixtures. Our survey provides insights into the advantages and disadvantages of various multi-material closure models in different problem configurations.

  1. Hydrodynamic modeling of an X-ray flare on Proxima Centauri observed by the Einstein telescope

    SciTech Connect

    Reale, F.; Peres, G.; Serio, S.; Rosner, R.; Schmitt, J.H.M.M.

    1988-05-01

    Hydrodynamic numerical calculations of a flare which occurred on Proxima Centauri and was observed by the Einstein satellite on August 20, 1980 at 12:50 UT are presented. The highlights of the hydrodynamic code are reviewed, and the physical and geometrical parameters necessary for the calculations are derived and compared with observations. The results are consistent with the stellar flare being caused by the rapid dissipation of 5.9 x 10 to the 31st ergs, within a magnetic loop structure whose semilength is 7 x 10 to the 9th cm and cross-sectional radius is 7.3 x 10 to the 8th cm. The results provide evidence that flares on late-type stars can be described by a hydrodynamic model with a relatively simple geometry, similar to solar compact flares. 39 references.

  2. Speech coding

    SciTech Connect

    Ravishankar, C., Hughes Network Systems, Germantown, MD

    1998-05-08

    Speech is the predominant means of communication between human beings and since the invention of the telephone by Alexander Graham Bell in 1876, speech services have remained to be the core service in almost all telecommunication systems. Original analog methods of telephony had the disadvantage of speech signal getting corrupted by noise, cross-talk and distortion Long haul transmissions which use repeaters to compensate for the loss in signal strength on transmission links also increase the associated noise and distortion. On the other hand digital transmission is relatively immune to noise, cross-talk and distortion primarily because of the capability to faithfully regenerate digital signal at each repeater purely based on a binary decision. Hence end-to-end performance of the digital link essentially becomes independent of the length and operating frequency bands of the link Hence from a transmission point of view digital transmission has been the preferred approach due to its higher immunity to noise. The need to carry digital speech became extremely important from a service provision point of view as well. Modem requirements have introduced the need for robust, flexible and secure services that can carry a multitude of signal types (such as voice, data and video) without a fundamental change in infrastructure. Such a requirement could not have been easily met without the advent of digital transmission systems, thereby requiring speech to be coded digitally. The term Speech Coding is often referred to techniques that represent or code speech signals either directly as a waveform or as a set of parameters by analyzing the speech signal. In either case, the codes are transmitted to the distant end where speech is reconstructed or synthesized using the received set of codes. A more generic term that is applicable to these techniques that is often interchangeably used with speech coding is the term voice coding. This term is more generic in the sense that the

  3. Detonation waves in relativistic hydrodynamics

    SciTech Connect

    Cissoko, M. )

    1992-02-15

    This paper is concerned with an algebraic study of the equations of detonation waves in relativistic hydrodynamics taking into account the pressure and the energy of thermal radiation. A new approach to shock and detonation wavefronts is outlined. The fluid under consideration is assumed to be perfect (nonviscous and nonconducting) and to obey the following equation of state: {ital p}=({gamma}{minus}1){rho} where {ital p}, {rho}, and {gamma} are the pressure, the total energy density, and the adiabatic index, respectively. The solutions of the equations of detonation waves are reduced to the problem of finding physically acceptable roots of a quadratic polynomial {Pi}({ital X}) where {ital X} is the ratio {tau}/{tau}{sub 0} of dynamical volumes behind and ahead of the detonation wave. The existence and the locations of zeros of this polynomial allow it to be shown that if the equation of state of the burnt fluid is known then the variables characterizing the unburnt fluid obey well-defined physical relations.

  4. Hydrodynamic Instabilities Produced by Evaporation

    NASA Astrophysics Data System (ADS)

    Romo-Cruz, Julio Cesar Ruben; Hernandez-Zapata, Sergio; Ruiz-Chavarria, Gerardo

    2012-11-01

    When a liquid layer (alcohol in the present work) is in an environment where its relative humidity is less than 100 percent evaporation appears. When RH is above a certain threshold the liquid is at rest. If RH decreases below this threshold the flow becomes unstable, and hydrodynamic cells develop. The aim of this work is to understand the formation of those cells and its main features. Firstly, we investigate how the cell size depends on the layer width. We also study how temperature depends on the vertical coordinate when the cells are present. An inverse temperature gradient is found, that is, the bottom of liquid layer is colder than the free surface. This shows that the intuitive idea that the cells are due to a direct temperature gradient, following a Marangoni-like process, does not work. We propose the hypothesis that the evaporation produce a pressure gradient that is responsible of the cell development. On the other hand, using a Schlieren technique we study the topography of the free surface when cells are present. Finally the alcohol vapor layer adjacent to the liquid surface is explored using scattering experiments, giving some insight on the plausibility of the hypothesis described previously. Authors acknowledge support by DGAPA-UNAM under project IN116312 ``Vorticidad y ondas no lineales en fluidos.''

  5. Hydrodynamic repulsion of elastic dumbbells

    NASA Astrophysics Data System (ADS)

    Ekiel-Jezewska, Maria L.; Bukowicki, Marek; Gruca, Marta

    2015-11-01

    Dynamics of two identical elastic dumbbells, settling under gravity in a viscous fluid at low Reynolds number are analyzed within the point-particle model. Initially, the dumbbells are vertical, their centers are aligned horizontally, and the springs which connect the dumbbell's beads are at the equilibrium. The motion of the beads is determined numerically with the use of the Runge-Kutta method. After an initial relaxation phase, the system converges to a universal time-dependent solution. The elastic dumbbells tumble while falling, but their relative motion is not periodic (as in case of rigid dumbbells or pairs of separated beads). The elastic constraints break the time-reversal symmetry of the motion. As the result, the horizontal distance between the dumbbells slowly increases - they are hydrodynamically repelled from each other. This effect can be very large even though the elastic forces are always much smaller than gravity. The dynamics described above are equivalent to the motion of a single elastic dumbbell under a constant external force which is parallel to a flat free surface. The dumbbell migrates away from the interface and its tumbling time increases.

  6. Glimm's Method for Relativistic Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Cannizzo, J. K.; Gehrels, N.; Vishniac, E. T.

    2008-06-01

    We present the results of standard one-dimensional test problems in relativistic hydrodynamics using Glimm's (random choice) method and compare them to results obtained using finite differencing methods. For problems containing profiles with sharp edges, such as shocks, we find Glimm's method yields global errors ~1-3 orders of magnitude smaller than the traditional techniques. The strongest differences are seen for problems in which a shear field is superposed. For smooth flows, Glimm's method is inferior to standard methods. The location of specific features can be off by up to two grid points with respect to an exact solution in Glimm's method, and furthermore, curved states are not modeled optimally, since the method idealizes solutions as being composed of piecewise constant states. Thus, although Glimm's method is superior at correctly resolving sharp features, especially in the presence of shear, for realistic applications in which one typically finds smooth flows plus strong gradients or discontinuities, standard finite-difference methods yield smaller global errors. Glimm's method may prove useful in certain applications such as GRB afterglow shock propagation into a uniform medium.

  7. Global hydrodynamics of the sun

    NASA Astrophysics Data System (ADS)

    Monin, A. S.

    1980-09-01

    A review of studies (1960's-1970's) on solar global hydrodynamics is presented, the main areas discussed being differential rotation and generation of the 11-year solar cycle, which seem to be related. A summary of current knowledge about the sun is given, including dimensions, rotation, radiation, solar atmosphere, and solar interior (neutrinos, convection zone). Solar atmospheric inhomogeneities with relatively short lifetimes are discussed, the most important perturbations being spots, faculae, chromospheric flares, prominences, and coronal streamers and holes. Data on solar rotation are reviewed: Solar differential rotation is accompanied by the expenditure of energy to overcome the viscous forces, and without some mechanism which would replenish this energy, the angular rotation velocities, at various heliographic latitudes, would become equal after a few solar rotations. It is thought that the replenishment mechanism is the meridional and radial transport of angular momentum in the convection zone by giant convection cells and of the parameterized turbulent viscosity. Familiar and undisputed effects of the 11-yr solar cycle include auroras, and magnetic storms. Less familiar effects include variations in the level of atmospheric radioactive carbon, and correlations between solar activity and earth climatic variations.

  8. Hydrodynamic gradient expansion in gauge theory plasmas.

    PubMed

    Heller, Michal P; Janik, Romuald A; Witaszczyk, Przemysław

    2013-05-24

    We utilize the fluid-gravity duality to investigate the large order behavior of hydrodynamic gradient expansion of the dynamics of a gauge theory plasma system. This corresponds to the inclusion of dissipative terms and transport coefficients of very high order. Using the dual gravity description, we calculate numerically the form of the stress tensor for a boost-invariant flow in a hydrodynamic expansion up to terms with 240 derivatives. We observe a factorial growth of gradient contributions at large orders, which indicates a zero radius of convergence of the hydrodynamic series. Furthermore, we identify the leading singularity in the Borel transform of the hydrodynamic energy density with the lowest nonhydrodynamic excitation corresponding to a 'nonhydrodynamic' quasinormal mode on the gravity side. PMID:23745858

  9. Hydrodynamic phonon transport in suspended graphene.

    PubMed

    Lee, Sangyeop; Broido, David; Esfarjani, Keivan; Chen, Gang

    2015-01-01

    Recent studies of thermal transport in nanomaterials have demonstrated the breakdown of Fourier's law through observations of ballistic transport. Despite its unique features, another instance of the breakdown of Fourier's law, hydrodynamic phonon transport, has drawn less attention because it has been observed only at extremely low temperatures and narrow temperature ranges in bulk materials. Here, we predict on the basis of first-principles calculations that the hydrodynamic phonon transport can occur in suspended graphene at significantly higher temperatures and wider temperature ranges than in bulk materials. The hydrodynamic transport is demonstrated through drift motion of phonons, phonon Poiseuille flow and second sound. The significant hydrodynamic phonon transport in graphene is associated with graphene's two-dimensional features. This work opens a new avenue for understanding and manipulating heat flow in two-dimensional materials. PMID:25693180

  10. The core helium flash revisited. II. Two and three-dimensional hydrodynamic simulations

    NASA Astrophysics Data System (ADS)

    Mocák, M.; Müller, E.; Weiss, A.; Kifonidis, K.

    2009-07-01

    Context: We study turbulent convection during the core helium flash close to its peak by comparing the results of two and three-dimensional hydrodynamic simulations. Aims: In a previous study we found that the temporal evolution and the properties of the convection inferred from two-dimensional hydrodynamic studies are similar to those predicted by quasi-hydrostatic stellar evolutionary calculations. However, as vorticity is conserved in axisymmetric flows, two-dimensional simulations of convection are characterized by incorrect dominant spatial scales and exaggerated velocities. Here, we present three-dimensional simulations that eliminate the restrictions and flaws of two-dimensional models and that provide a geometrically unbiased insight into the hydrodynamics of the core helium flash. In particular, we study whether the assumptions and predictions of stellar evolutionary calculations based on the mixing-length theory can be confirmed by hydrodynamic simulations. Methods: We used a multidimensional Eulerian hydrodynamics code based on state-of-the-art numerical techniques to simulate the evolution of the helium core of a 1.25 M⊙ Pop I star. Results: Our three-dimensional hydrodynamic simulations of the evolution of a star during the peak of the core helium flash do not show any explosive behavior. The convective flow patterns developing in the three-dimensional models are structurally different from those of the corresponding two-dimensional models, and the typical convective velocities are lower than those found in their two-dimensional counterparts. Three-dimensional models also tend to agree more closely with the predictions of mixing length theory. Our hydrodynamic simulations show the turbulent entrainment that leads to a growth of the convection zone on a dynamic time scale. In contrast to mixing length theory, the outer part of the convection zone is characterized by a subadiabatic temperature gradient.

  11. A dynamic broadband reflector built from microscopic silica spheres in the ‘disco’ clam Ctenoides ales

    PubMed Central

    Dougherty, Lindsey F.; Johnsen, Sönke; Caldwell, Roy L.; Marshall, N. Justin

    2014-01-01

    The ‘disco’ or ‘electric’ clam Ctenoides ales (Limidae) is the only species of bivalve known to have a behaviourally mediated photic display. This display is so vivid that it has been repeatedly confused for bioluminescence, but it is actually the result of scattered light. The flashing occurs on the mantle lip, where electron microscopy revealed two distinct tissue sides: one highly scattering side that contains dense aggregations of spheres composed of silica, and one highly absorbing side that does not. High-speed video confirmed that the two sides act in concert to alternate between vivid broadband reflectance and strong absorption in the blue region of the spectrum. Optical modelling suggests that the diameter of the spheres is nearly optimal for scattering visible light, especially at shorter wavelengths which predominate in their environment. This simple mechanism produces a striking optical effect that may function as a signal. PMID:24966236

  12. The neural bases of difficult speech comprehension and speech production: Two Activation Likelihood Estimation (ALE) meta-analyses.

    PubMed

    Adank, Patti

    2012-07-01

    The role of speech production mechanisms in difficult speech comprehension is the subject of on-going debate in speech science. Two Activation Likelihood Estimation (ALE) analyses were conducted on neuroimaging studies investigating difficult speech comprehension or speech production. Meta-analysis 1 included 10 studies contrasting comprehension of less intelligible/distorted speech with more intelligible speech. Meta-analysis 2 (21 studies) identified areas associated with speech production. The results indicate that difficult comprehension involves increased reliance of cortical regions in which comprehension and production overlapped (bilateral anterior Superior Temporal Sulcus (STS) and anterior Supplementary Motor Area (pre-SMA)) and in an area associated with intelligibility processing (left posterior MTG), and second involves increased reliance on cortical areas associated with general executive processes (bilateral anterior insulae). Comprehension of distorted speech may be supported by a hybrid neural mechanism combining increased involvement of areas associated with general executive processing and areas shared between comprehension and production. PMID:22633697

  13. Chemo-hydrodynamic patterns in porous media.

    PubMed

    De Wit, A

    2016-10-13

    Chemical reactions can interplay with hydrodynamic flows to generate chemo-hydrodynamic instabilities affecting the spatio-temporal evolution of the concentration of the chemicals. We review here such instabilities for porous media flows. We describe the influence of chemical reactions on viscous fingering, buoyancy-driven fingering in miscible systems, convective dissolution as well as precipitation patterns. Implications for environmental systems are discussed.This article is part of the themed issue 'Energy and the subsurface'. PMID:27597788

  14. Flagellar Synchronization Independent of Hydrodynamic Interactions

    NASA Astrophysics Data System (ADS)

    Friedrich, Benjamin M.; Jülicher, Frank

    2012-09-01

    Inspired by the coordinated beating of the flagellar pair of the green algae Chlamydomonas, we study theoretically a simple, mirror-symmetric swimmer, which propels itself at low Reynolds number by a revolving motion of a pair of spheres. We show that perfect synchronization between these two driven spheres can occur due to the motion of the swimmer and local hydrodynamic friction forces. Hydrodynamic interactions, though crucial for net propulsion, contribute little to synchronization for this free-moving swimmer.

  15. Prediction of hydrodynamic performance of an FLNG system in side-by-side offloading operation

    NASA Astrophysics Data System (ADS)

    Zhao, Wenhua; Yang, Jianmin; Hu, Zhiqiang; Tao, Longbin

    2014-04-01

    Floating liquefied natural gas (FLNG) is a type of liquefied natural gas (LNG) production system that shows prospects in exploitation of stranded offshore gas fields. The dynamic performance of an FLNG system in side-by-side configuration with a LNG carrier under the combined actions of wave, current and wind can be quite complex. This paper presents a comprehensive study on the hydrodynamics of an FLNG system with a focus on the nonlinear coupling effects of vessels and connection systems based on the concept FLNG prototype recently designed for South China Sea. In this study, the hydrodynamic characteristics of the two floating vessels connected through hawsers and fenders are investigated using a state-of-the-art time-domain simulation code SIMO, considering their mechanical and hydrodynamic coupling effects. The simulation model consisting of FLNG and LNG carrier is developed and calibrated by a series of model tests including a tuned damping and viscous levels. The hydrodynamic performances of the two floating vessels under an extreme sea state during side-by-side offloading operation are obtained, and their relative motions and the force responses of the connection hawsers and fenders are analyzed. Sensitivity studies are conducted to clarify contributions from the pretension and the stiffness of the connection hawsers. The effects on the hydrodynamic performance of the vessels and on the loads of the connection system are also investigated.

  16. The role of the right temporoparietal junction in attention and social interaction as revealed by ALE meta-analysis

    PubMed Central

    Rottschy, C.; Oberwelland, E.; Bzdok, D.; Fox, P. T.; Eickhoff, S. B.; Fink, G. R.; Konrad, K.

    2016-01-01

    The right temporoparietal junction (rTPJ) is frequently associated with different capacities that to shift attention to unexpected stimuli (reorienting of attention) and to understand others’ (false) mental state [theory of mind (ToM), typically represented by false belief tasks]. Competing hypotheses either suggest the rTPJ representing a unitary region involved in separate cognitive functions or consisting of subregions subserving distinct processes. We conducted activation likelihood estimation (ALE) meta-analyses to test these hypotheses. A conjunction analysis across ALE meta-analyses delineating regions consistently recruited by reorienting of attention and false belief studies revealed the anterior rTPJ, suggesting an overarching role of this specific region. Moreover, the anatomical difference analysis unravelled the posterior rTPJ as higher converging in false belief compared with reorienting of attention tasks. This supports the concept of an exclusive role of the posterior rTPJ in the social domain. These results were complemented by meta-analytic connectivity mapping (MACM) and resting-state functional connectivity (RSFC) analysis to investigate whole-brain connectivity patterns in task-constrained and task-free brain states. This allowed for detailing the functional separation of the anterior and posterior rTPJ. The combination of MACM and RSFC mapping showed that the posterior rTPJ has connectivity patterns with typical ToM regions, whereas the anterior part of rTPJ co-activates with the attentional network. Taken together, our data suggest that rTPJ contains two functionally fractionated subregions: while posterior rTPJ seems exclusively involved in the social domain, anterior rTPJ is involved in both, attention and ToM, conceivably indicating an attentional shifting role of this region. PMID:24915964

  17. The role of the right temporoparietal junction in attention and social interaction as revealed by ALE meta-analysis.

    PubMed

    Krall, S C; Rottschy, C; Oberwelland, E; Bzdok, D; Fox, P T; Eickhoff, S B; Fink, G R; Konrad, K

    2015-03-01

    The right temporoparietal junction (rTPJ) is frequently associated with different capacities that to shift attention to unexpected stimuli (reorienting of attention) and to understand others' (false) mental state [theory of mind (ToM), typically represented by false belief tasks]. Competing hypotheses either suggest the rTPJ representing a unitary region involved in separate cognitive functions or consisting of subregions subserving distinct processes. We conducted activation likelihood estimation (ALE) meta-analyses to test these hypotheses. A conjunction analysis across ALE meta-analyses delineating regions consistently recruited by reorienting of attention and false belief studies revealed the anterior rTPJ, suggesting an overarching role of this specific region. Moreover, the anatomical difference analysis unravelled the posterior rTPJ as higher converging in false belief compared with reorienting of attention tasks. This supports the concept of an exclusive role of the posterior rTPJ in the social domain. These results were complemented by meta-analytic connectivity mapping (MACM) and resting-state functional connectivity (RSFC) analysis to investigate whole-brain connectivity patterns in task-constrained and task-free brain states. This allowed for detailing the functional separation of the anterior and posterior rTPJ. The combination of MACM and RSFC mapping showed that the posterior rTPJ has connectivity patterns with typical ToM regions, whereas the anterior part of rTPJ co-activates with the attentional network. Taken together, our data suggest that rTPJ contains two functionally fractionated subregions: while posterior rTPJ seems exclusively involved in the social domain, anterior rTPJ is involved in both, attention and ToM, conceivably indicating an attentional shifting role of this region. PMID:24915964

  18. QR Codes

    ERIC Educational Resources Information Center

    Lai, Hsin-Chih; Chang, Chun-Yen; Li, Wen-Shiane; Fan, Yu-Lin; Wu, Ying-Tien

    2013-01-01

    This study presents an m-learning method that incorporates Integrated Quick Response (QR) codes. This learning method not only achieves the objectives of outdoor education, but it also increases applications of Cognitive Theory of Multimedia Learning (CTML) (Mayer, 2001) in m-learning for practical use in a diverse range of outdoor locations. When…

  19. The hydrodynamic focusing effect inside rectangular microchannels

    NASA Astrophysics Data System (ADS)

    Lee, Gwo-Bin; Chang, Chih-Chang; Huang, Sung-Bin; Yang, Ruey-Jen

    2006-05-01

    This paper presents a theoretical and experimental investigation into the hydrodynamic focusing effect in rectangular microchannels. Two theoretical models for two-dimensional hydrodynamic focusing are proposed. The first model predicts the width of the focused stream in symmetric hydrodynamic focusing in microchannels of various aspect ratios. The second model predicts the location and the width of the focused stream in asymmetric hydrodynamic focusing in microchannels with a low or high aspect ratio. In both models, the theoretical results are shown to be in good agreement with the experimental data. Hence, the models provide a useful means of performing a theoretical analysis of flow control in microfluidic devices using hydrodynamic focusing effects. The ability of the proposed models to control the focused stream within a micro flow cytometer is verified in a series of experimental trials performed using polystyrene microparticles with a diameter of 20 µm. The experimental data show that the width of the focused stream can be reduced to the same order of magnitude as that of the particle size. Furthermore, it is shown that the microparticles can be successfully hydrodynamically focused and switched to the desired outlet port of the cytometer. Hence, the models presented in this study provide sufficient control to support cell/particle counting and sorting applications.

  20. Hydrodynamic calculations of 20-TeV beam interactions with the SSC beam dump

    SciTech Connect

    Wilson, D.C.; Wingate, C.A.; Goldstein, J.C.; Godwin, R.P. ); Mokhov, N.V. )

    1993-01-01

    The 300[mu]s, 400 MJ SSC proton beam must be contained when extracted to the external beam dump. The current design for the SSC beam dump can tolerate the beat load produced if the beam is deflected into a raster scan over the face of the dump. If the high frequency deflecting magnet were to fail, the beam would scan a single strip across the dump face resulting in higher local energy deposition. This could vaporize some material and lead to high pressures. Since the beam duration is comparable to the characteristic time of expected hydrodynamic motions, we have combined the static energy deposition capability of the MARS computer code with the two- and three-dimensional hydrodynamics of the MBA and SPHINX codes. EOS data suggest an energy deposition threshold of 15 kJ/g, below which hydrodynamic effects are minimal. Above this our 2D calculations show a hole boring rate of 7 cm/[mu]s for the nominal beam, and pressures of a few kbar. Scanning the nominal beam faster than 0.08 cm/[mu]s should minimize hydrodynamic effects. 3D calculations support this.

  1. Hydrodynamic calculations of 20-TeV beam interactions with the SSC beam dump

    SciTech Connect

    Wilson, D.C.; Wingate, C.A.; Goldstein, J.C.; Godwin, R.P.; Mokhov, N.V.

    1993-06-01

    The 300{mu}s, 400 MJ SSC proton beam must be contained when extracted to the external beam dump. The current design for the SSC beam dump can tolerate the beat load produced if the beam is deflected into a raster scan over the face of the dump. If the high frequency deflecting magnet were to fail, the beam would scan a single strip across the dump face resulting in higher local energy deposition. This could vaporize some material and lead to high pressures. Since the beam duration is comparable to the characteristic time of expected hydrodynamic motions, we have combined the static energy deposition capability of the MARS computer code with the two- and three-dimensional hydrodynamics of the MBA and SPHINX codes. EOS data suggest an energy deposition threshold of 15 kJ/g, below which hydrodynamic effects are minimal. Above this our 2D calculations show a hole boring rate of 7 cm/{mu}s for the nominal beam, and pressures of a few kbar. Scanning the nominal beam faster than 0.08 cm/{mu}s should minimize hydrodynamic effects. 3D calculations support this.

  2. Validation of Hydrodynamic Load Models Using CFD for the OC4-DeepCwind Semisubmersible: Preprint

    SciTech Connect

    Benitz, M. A.; Schmidt, D. P.; Lackner, M. A.; Stewart, G. M.; Jonkman, J.; Robertson, A.

    2015-03-01

    Computational fluid dynamics (CFD) simulations were carried out on the OC4-DeepCwind semi-submersible to obtain a better understanding of how to set hydrodynamic coefficients for the structure when using an engineering tool such as FAST to model the system. The focus here was on the drag behavior and the effects of the free-surface, free-ends and multi-member arrangement of the semi-submersible structure. These effects are investigated through code-to-code comparisons and flow visualizations. The implications on mean load predictions from engineering tools are addressed. The work presented here suggests that selection of drag coefficients should take into consideration a variety of geometric factors. Furthermore, CFD simulations demonstrate large time-varying loads due to vortex shedding, which FAST's hydrodynamic module, HydroDyn, does not model. The implications of these oscillatory loads on the fatigue life needs to be addressed.

  3. GENASIS: General Astrophysical Simulation System. I. Refinable Mesh and Nonrelativistic Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Cardall, Christian Y.; Budiardja, Reuben D.; Endeve, Eirik; Mezzacappa, Anthony

    2014-02-01

    GenASiS (General Astrophysical Simulation System) is a new code being developed initially and primarily, though by no means exclusively, for the simulation of core-collapse supernovae on the world's leading capability supercomputers. This paper—the first in a series—demonstrates a centrally refined coordinate patch suitable for gravitational collapse and documents methods for compressible nonrelativistic hydrodynamics. We benchmark the hydrodynamics capabilities of GenASiS against many standard test problems; the results illustrate the basic competence of our implementation, demonstrate the strengths and limitations of the HLLC relative to the HLL Riemann solver in a number of interesting cases, and provide preliminary indications of the code's ability to scale and to function with cell-by-cell fixed-mesh refinement.

  4. Hydrodynamic models of a cepheid atmosphere. Ph.D. Thesis - Maryland Univ., College Park

    NASA Technical Reports Server (NTRS)

    Karp, A. H.

    1974-01-01

    A method for including the solution of the transfer equation in a standard Henyey type hydrodynamic code was developed. This modified Henyey method was used in an implicit hydrodynamic code to compute deep envelope models of a classical Cepheid with a period of 12(d) including radiative transfer effects in the optically thin zones. It was found that the velocity gradients in the atmosphere are not responsible for the large microturbulent velocities observed in Cepheids but may be responsible for the occurrence of supersonic microturbulence. It was found that the splitting of the cores of the strong lines is due to shock induced temperature inversions in the line forming region. The adopted light, color, and velocity curves were used to study three methods frequently used to determine the mean radii of Cepheids. It is concluded that an accuracy of 10% is possible only if high quality observations are used.

  5. Multi-phase SPH modelling of violent hydrodynamics on GPUs

    NASA Astrophysics Data System (ADS)

    Mokos, Athanasios; Rogers, Benedict D.; Stansby, Peter K.; Domínguez, José M.

    2015-11-01

    This paper presents the acceleration of multi-phase smoothed particle hydrodynamics (SPH) using a graphics processing unit (GPU) enabling large numbers of particles (10-20 million) to be simulated on just a single GPU card. With novel hardware architectures such as a GPU, the optimum approach to implement a multi-phase scheme presents some new challenges. Many more particles must be included in the calculation and there are very different speeds of sound in each phase with the largest speed of sound determining the time step. This requires efficient computation. To take full advantage of the hardware acceleration provided by a single GPU for a multi-phase simulation, four different algorithms are investigated: conditional statements, binary operators, separate particle lists and an intermediate global function. Runtime results show that the optimum approach needs to employ separate cell and neighbour lists for each phase. The profiler shows that this approach leads to a reduction in both memory transactions and arithmetic operations giving significant runtime gains. The four different algorithms are compared to the efficiency of the optimised single-phase GPU code, DualSPHysics, for 2-D and 3-D simulations which indicate that the multi-phase functionality has a significant computational overhead. A comparison with an optimised CPU code shows a speed up of an order of magnitude over an OpenMP simulation with 8 threads and two orders of magnitude over a single thread simulation. A demonstration of the multi-phase SPH GPU code is provided by a 3-D dam break case impacting an obstacle. This shows better agreement with experimental results than an equivalent single-phase code. The multi-phase GPU code enables a convergence study to be undertaken on a single GPU with a large number of particles that otherwise would have required large high performance computing resources.

  6. Numerical MHD codes for modeling astrophysical flows

    NASA Astrophysics Data System (ADS)

    Koldoba, A. V.; Ustyugova, G. V.; Lii, P. S.; Comins, M. L.; Dyda, S.; Romanova, M. M.; Lovelace, R. V. E.

    2016-05-01

    We describe a Godunov-type magnetohydrodynamic (MHD) code based on the Miyoshi and Kusano (2005) solver which can be used to solve various astrophysical hydrodynamic and MHD problems. The energy equation is in the form of entropy conservation. The code has been implemented on several different coordinate systems: 2.5D axisymmetric cylindrical coordinates, 2D Cartesian coordinates, 2D plane polar coordinates, and fully 3D cylindrical coordinates. Viscosity and diffusivity are implemented in the code to control the accretion rate in the disk and the rate of penetration of the disk matter through the magnetic field lines. The code has been utilized for the numerical investigations of a number of different astrophysical problems, several examples of which are shown.

  7. Spectral Differentiation Operators for Solving Hydrodynamic PSE Models

    NASA Astrophysics Data System (ADS)

    Alina Bistrian, Diana; Ioana Dragomirescu, Florica; Savii, George; Monica Stoica, Diana

    2010-09-01

    This paper explores the use of spectral methods in the numerical investigation of the eigenvalue problem governing the linear stability of the mechanical equilibria of the flow motion. Parabolized stability equations are used as a new approach to investigate the stability of the swirling flow ingested by the conical diffuser in the Francis hydropower turbine which determines the behavior and the performances of the draft tube. For the cases of sophisticated boundary conditions, the study involves a new mathematical model in spectral operators formulation and a simulation algorithm that translates the hydrodynamic PSE model into computer code instructions immediately following problem formulations. A two-dimensional stability analysis is performed and the frequency ranges of the most unstable modes are provided together with the perturbation amplitudes.

  8. CASTRO: A NEW COMPRESSIBLE ASTROPHYSICAL SOLVER. II. GRAY RADIATION HYDRODYNAMICS

    SciTech Connect

    Zhang, W.; Almgren, A.; Bell, J.; Howell, L.; Burrows, A.

    2011-10-01

    We describe the development of a flux-limited gray radiation solver for the compressible astrophysics code, CASTRO. CASTRO uses an Eulerian grid with block-structured adaptive mesh refinement based on a nested hierarchy of logically rectangular variable-sized grids with simultaneous refinement in both space and time. The gray radiation solver is based on a mixed-frame formulation of radiation hydrodynamics. In our approach, the system is split into two parts, one part that couples the radiation and fluid in a hyperbolic subsystem, and another parabolic part that evolves radiation diffusion and source-sink terms. The hyperbolic subsystem is solved explicitly with a high-order Godunov scheme, whereas the parabolic part is solved implicitly with a first-order backward Euler method.

  9. A method of smoothed particle hydrodynamics using spheroidal kernels

    NASA Technical Reports Server (NTRS)

    Fulbright, Michael S.; Benz, Willy; Davies, Melvyn B.

    1995-01-01

    We present a new method of three-dimensional smoothed particle hydrodynamics (SPH) designed to model systems dominated by deformation along a preferential axis. These systems cause severe problems for SPH codes using spherical kernels, which are best suited for modeling systems which retain rough spherical symmetry. Our method allows the smoothing length in the direction of the deformation to evolve independently of the smoothing length in the perpendicular plane, resulting in a kernel with a spheroidal shape. As a result the spatial resolution in the direction of deformation is significantly improved. As a test case we present the one-dimensional homologous collapse of a zero-temperature, uniform-density cloud, which serves to demonstrate the advantages of spheroidal kernels. We also present new results on the problem of the tidal disruption of a star by a massive black hole.

  10. SPLASH: An Interactive Visualization Tool for Smoothed Particle Hydrodynamics Simulations

    NASA Astrophysics Data System (ADS)

    Price, Daniel J.

    2011-03-01

    SPLASH (formerly SUPERSPHPLOT) is a visualization tool for output from (astrophysical) simulations using the Smoothed Particle Hydrodynamics (SPH) method in one, two and three dimensions. It is written in Fortran 90 and utilises the PGPLOT graphics subroutine library to do the actual plotting. It is based around a command-line menu structure but utilises the interactive capabilities of PGPLOT to manipulate data interactively in the plotting window. SPLASH is a fully interactive program; visualizations can be changed rapidly at the touch of a button (e.g. zooming, rotating, shifting cross section positions etc). Data is read directly from the code dump format giving rapid access to results and the visualization is advanced forwards and backwards through timesteps by single keystrokes. SPLASH uses the SPH kernel to render plots of not only density but other physical quantities, giving a smooth representation of the data.

  11. CNO abundances and hydrodynamic models of the nova outburst.

    NASA Technical Reports Server (NTRS)

    Starrfield, S.; Truran, J. W.; Sparks, W. M.; Kutter, G. S.

    1972-01-01

    We have used a fully implicit, Lagrangian, hydrodynamic computer code incorporating a nuclear reaction network to follow thermonuclear runaways in the hydrogen-rich envelopes of white dwarfs in order to produce a nova outburst. Because of the short time-scales and the high nuclear burning rates produced in our models, the nuclear reactions are far out of equilibrium and the beta-plus unstable nuclei become the most abundant nuclei in the envelope except for hydrogen and helium. Our models have ejected 1.00017 solar mass with kinetic energies of 8 times 10 to the 44-th power ergs, a value that agrees quite closely with the observed values for novae.

  12. Hydrodynamics calculations for mini jade gages. Technical report

    SciTech Connect

    Schlaug, R.N.

    1983-07-29

    Two-dimensional hydrodynamics calculations were made with the STEALTH code to determine the response under 10 GPa loading of three designs of the SAI particle velocity gage. The calculations showed which design best measured the free field particle velocity. Two-dimensional calculations were also made for four designs of the SRI cylindrical stress gage. The calculations determined that the internal gage dynamics, particularly shock reflections, were primarily responsible for differences between the gage response and the free field stress. A material parameter study using a one-dimensional model was made to see if the use of other material combinations would improve the gage response. The internal dynamics of the flat pack stress gage were investigated using a one-dimensional model. The calculations indicated the severe early-time ringing seen in the gage response is caused by oscillatory motion of the iron plates.

  13. Topology Studies of Hydrodynamics Using Two-Particle Correlation Analysis

    SciTech Connect

    Takahashi, J.; Tavares, B. M.; Qian, W. L.; Andrade, R.; Grassi, F.; Hama, Y.; Kodama, T.; Xu, N.

    2009-12-11

    The effects of fluctuating initial conditions are studied in the context of relativistic heavy ion collisions where a rapidly evolving system is formed. Two-particle correlation analysis is applied to events generated with the NEXSPHERIO hydrodynamic code, starting with fluctuating nonsmooth initial conditions (IC). The results show that the nonsmoothness in the IC survives the hydroevolution and can be seen as topological features of the angular correlation function of the particles emerging from the evolving system. A long range correlation is observed in the longitudinal direction and in the azimuthal direction a double peak structure is observed in the opposite direction to the trigger particle. This analysis provides clear evidence that these are signatures of the combined effect of tubular structures present in the IC and the proceeding collective dynamics of the hot and dense medium.

  14. Radiation Hydrodynamic Simulations of an Inertial Fusion Energy Reactor Chamber

    NASA Astrophysics Data System (ADS)

    Sacks, Ryan Foster

    Inertial fusion energy reactors present great promise for the future as they are capable of providing baseline power with no carbon footprint. Simulation work regarding the chamber response and first wall insult is carried out using the 1-D BUCKY radiation hydrodynamics code for a variety of differing chamber fills, radii, chamber obstructions and first wall materials. Discussion of the first wall temperature rise, x-ray spectrum incident on the wall, shock timing and maximum overpressure are presented. An additional discussion of the impact of different gas opacities and their effect on overall chamber dynamics, including the formation of two shock fronts, is also presented. This work is performed under collaboration with Lawrence Livermore National Laboratory at the University of Wisconsin-Madison's Fusion Technology Institute.

  15. A First Approach to Hydrodynamics in General Relativistic Systems Using SPH

    NASA Astrophysics Data System (ADS)

    Cruz-Pérez, J. P.; González, J. A.; Montoya, E.

    2010-07-01

    In this work we present the Lagrangian formulation of the general relativistic ideal fluid equations. With the help of the standard Smoothed Particle Hydrodynamics (SPH) method we obtain a discretization of the motion equations. Having in mind that several of the most interesting astrophysical systems that we observe in the universe have been shaped by fluid dynamical processes, we want to use this method to study them. We present the first steps to implement such general relativistic SPH codes.

  16. Beam Induced Hydrodynamic Tunneling in the Future Circular Collider Components

    NASA Astrophysics Data System (ADS)

    Tahir, N. A.; Burkart, F.; Schmidt, R.; Shutov, A.; Wollmann, D.; Piriz, A. R.

    2016-08-01

    A future circular collider (FCC) has been proposed as a post-Large Hadron Collider accelerator, to explore particle physics in unprecedented energy ranges. The FCC is a circular collider in a tunnel with a circumference of 80-100 km. The FCC study puts an emphasis on proton-proton high-energy and electron-positron high-intensity frontier machines. A proton-electron interaction scenario is also examined. According to the nominal FCC parameters, each of the 50 TeV proton beams will carry an amount of 8.5 GJ energy that is equivalent to the kinetic energy of an Airbus A380 (560 t) at a typical speed of 850 km /h . Safety of operation with such extremely energetic beams is an important issue, as off-nominal beam loss can cause serious damage to the accelerator and detector components with a severe impact on the accelerator environment. In order to estimate the consequences of an accident with the full beam accidently deflected into equipment, we have carried out numerical simulations of interaction of a FCC beam with a solid copper target using an energy-deposition code (fluka) and a 2D hydrodynamic code (big2) iteratively. These simulations show that, although the penetration length of a single FCC proton and its shower in solid copper is about 1.5 m, the full FCC beam will penetrate up to about 350 m into the target because of the "hydrodynamic tunneling." These simulations also show that a significant part of the target is converted into high-energy-density matter. We also discuss this interesting aspect of this study.

  17. New formulation of leading order anisotropic hydrodynamics

    NASA Astrophysics Data System (ADS)

    Tinti, Leonardo

    2015-05-01

    Anisotropic hydrodynamics is a reorganization of the relativistic hydrodynamics expansion, with the leading order already containing substantial momentum-space anisotropies. The latter are a cause of concern in the traditional viscous hydrodynamics, since large momentum anisotropies generated in ultrarelativistic heavy-ion collisions are not consistent with the hypothesis of small deviations from an isotropic background, i.e., from the local equilibrium distribution. We discuss the leading order of the expansion, presenting a new formulation for the (1+1)- dimensional case, namely, for the longitudinally boost invariant and cylindrically symmetric flow. This new approach is consistent with the well established framework of Israel and Stewart in the close to equilibrium limit (where we expect viscous hydrodynamics to work well). If we consider the (0+1)-dimensional case, that is, transversally homogeneous and longitudinally boost invariant flow, the new form of anisotropic hydrodynamics leads to better agreement with known solutions of the Boltzmann equation than the previous formulations, especially when we consider massive particles.

  18. Hydrodynamic modulation of pluripotent stem cells

    PubMed Central

    2012-01-01

    Controlled expansion and differentiation of pluripotent stem cells (PSCs) using reproducible, high-throughput methods could accelerate stem cell research for clinical therapies. Hydrodynamic culture systems for PSCs are increasingly being used for high-throughput studies and scale-up purposes; however, hydrodynamic cultures expose PSCs to complex physical and chemical environments that include spatially and temporally modulated fluid shear stresses and heterogeneous mass transport. Furthermore, the effects of fluid flow on PSCs cannot easily be attributed to any single environmental parameter since the cellular processes regulating self-renewal and differentiation are interconnected and the complex physical and chemical parameters associated with fluid flow are thus difficult to independently isolate. Regardless of the challenges posed by characterizing fluid dynamic properties, hydrodynamic culture systems offer several advantages over traditional static culture, including increased mass transfer and reduced cell handling. This article discusses the challenges and opportunities of hydrodynamic culture environments for the expansion and differentiation of PSCs in microfluidic systems and larger-volume suspension bioreactors. Ultimately, an improved understanding of the effects of hydrodynamics on the self-renewal and differentiation of PSCs could yield improved bioprocessing technologies to attain scalable PSC culture strategies that will probably be requisite for the development of therapeutic and diagnostic applications. PMID:23168068

  19. Hydrodynamic approaches in relativistic heavy ion reactions

    NASA Astrophysics Data System (ADS)

    Derradi de Souza, R.; Koide, T.; Kodama, T.

    2016-01-01

    We review several facets of the hydrodynamic description of the relativistic heavy ion collisions, starting from the historical motivation to the present understandings of the observed collective aspects of experimental data, especially those of the most recent RHIC and LHC results. In this report, we particularly focus on the conceptual questions and the physical foundations of the validity of the hydrodynamic approach itself. We also discuss recent efforts to clarify some of the points in this direction, such as the various forms of derivations of relativistic hydrodynamics together with the limitations intrinsic to the traditional approaches, variational approaches, known analytic solutions for special cases, and several new theoretical developments. Throughout this review, we stress the role of course-graining procedure in the hydrodynamic description and discuss its relation to the physical observables through the analysis of a hydrodynamic mapping of a microscopic transport model. Several questions to be answered to clarify the physics of collective phenomena in the relativistic heavy ion collisions are pointed out.

  20. Collisionless stellar hydrodynamics as an efficient alternative to N-body methods

    NASA Astrophysics Data System (ADS)

    Mitchell, Nigel L.; Vorobyov, Eduard I.; Hensler, Gerhard

    2013-01-01

    The dominant constituents of the Universe's matter are believed to be collisionless in nature and thus their modelling in any self-consistent simulation is extremely important. For simulations that deal only with dark matter or stellar systems, the conventional N-body technique is fast, memory efficient and relatively simple to implement. However when extending simulations to include the effects of gas physics, mesh codes are at a distinct disadvantage compared to Smooth Particle Hydrodynamics (SPH) codes. Whereas implementing the N-body approach into SPH codes is fairly trivial, the particle-mesh technique used in mesh codes to couple collisionless stars and dark matter to the gas on the mesh has a series of significant scientific and technical limitations. These include spurious entropy generation resulting from discreteness effects, poor load balancing and increased communication overhead which spoil the excellent scaling in massively parallel grid codes. In this paper we propose the use of the collisionless Boltzmann moment equations as a means to model the collisionless material as a fluid on the mesh, implementing it into the massively parallel FLASH Adaptive Mesh Refinement (AMR) code. This approach which we term `collisionless stellar hydrodynamics' enables us to do away with the particle-mesh approach and since the parallelization scheme is identical to that used for the hydrodynamics, it preserves the excellent scaling of the FLASH code already demonstrated on peta-flop machines. We find that the classic hydrodynamic equations and the Boltzmann moment equations can be reconciled under specific conditions, allowing us to generate analytic solutions for collisionless systems using conventional test problems. We confirm the validity of our approach using a suite of demanding test problems, including the use of a modified Sod shock test. By deriving the relevant eigenvalues and eigenvectors of the Boltzmann moment equations, we are able to use high order

  1. Downstream Transport System for the Second Axis of the Dual-Axis Radiographic Hydrodynamic Test Facility

    NASA Astrophysics Data System (ADS)

    Chen, Yu-Jiuan; Bertolini, Lou; Caporaso, George J.; Ho, Darwin D.-M.; McCarrick, James F.; Paul, Arthur C.; Pincosy, Philip A.; Poole, Brian R.; Wang, Li-Fang; Westenskow, Glen A.

    2002-12-01

    This paper presents physics design of the DARHT-II downstream system, which consists of a diagnostic beam stop, a novel, fast, high-precision kicker system and the x-ray converter target assembly. The beamline configuration and its beam parameter acceptance, the transverse resistive wall instability modeling, the ion hose instability in the presence of the background gas, and the simulations of beam spill are discussed. We also present the target converter assembly's configuration, and the simulated x-ray spot sizes and doses based on the radiation hydrodynamics code LASNEX and the Monte Carlo radiation transport code MCNP.

  2. Hydrodynamics of a unitary Bose gas

    NASA Astrophysics Data System (ADS)

    Man, Jay; Fletcher, Richard; Lopes, Raphael; Navon, Nir; Smith, Rob; Hadzibabic, Zoran

    2016-05-01

    In general, normal-phase Bose gases are well described by modelling them as ideal gases. In particular, hydrodynamic flow is usually not observed in the expansion dynamics of normal gases, and is more readily observable in Bose-condensed gases. However, by preparing strongly-interacting clouds, we observe hydrodynamic behaviour in normal-phase Bose gases, including the `maximally' hydrodynamic unitary regime. We avoid the atom losses that often hamper experimental access of this regime by using radio-frequency injection, which switches on interactions much faster than trap or loss timescales. At low phase-space densities, we find excellent agreement with a collisional model based on the Boltzmann equation. At higher phase-space densities our results show a deviation from this model in the vicinity of an Efimov resonance, which cannot be accounted for by measured losses.

  3. Dynamo efficiency controlled by hydrodynamic bistability.

    PubMed

    Miralles, Sophie; Herault, Johann; Herault, Johann; Fauve, Stephan; Gissinger, Christophe; Pétrélis, François; Daviaud, François; Dubrulle, Bérengère; Boisson, Jean; Bourgoin, Mickaël; Verhille, Gautier; Odier, Philippe; Pinton, Jean-François; Plihon, Nicolas

    2014-06-01

    Hydrodynamic and magnetic behaviors in a modified experimental setup of the von Kármán sodium flow-where one disk has been replaced by a propeller-are investigated. When the rotation frequencies of the disk and the propeller are different, we show that the fully turbulent hydrodynamic flow undergoes a global bifurcation between two configurations. The bistability of these flow configurations is associated with the dynamics of the central shear layer. The bistable flows are shown to have different dynamo efficiencies; thus for a given rotation rate of the soft-iron disk, two distinct magnetic behaviors are observed depending on the flow configuration. The hydrodynamic transition controls the magnetic field behavior, and bifurcations between high and low magnetic field branches are investigated. PMID:25019895

  4. Hydrodynamic stellar interactions in dense star clusters

    NASA Technical Reports Server (NTRS)

    Rasio, Frederic A.

    1993-01-01

    Highly detailed HST observations of globular-cluster cores and galactic nuclei motivate new theoretical studies of the violent dynamical processes which govern the evolution of these very dense stellar systems. These processes include close stellar encounters and direct physical collisions between stars. Such hydrodynamic stellar interactions are thought to explain the large populations of blue stragglers, millisecond pulsars, X-ray binaries, and other peculiar sources observed in globular clusters. Three-dimensional hydrodynamics techniques now make it possible to perform realistic numerical simulations of these interactions. The results, when combined with those of N-body simulations of stellar dynamics, should provide for the first time a realistic description of dense star clusters. Here I review briefly current theoretical work on hydrodynamic stellar interactions, emphasizing its relevance to recent observations.

  5. Nondecaying Hydrodynamic Interactions along Narrow Channels

    NASA Astrophysics Data System (ADS)

    Misiunas, Karolis; Pagliara, Stefano; Lauga, Eric; Lister, John R.; Keyser, Ulrich F.

    2015-07-01

    Particle-particle interactions are of paramount importance in every multibody system as they determine the collective behavior and coupling strength. Many well-known interactions such as electrostatic, van der Waals, or screened Coulomb interactions, decay exponentially or with negative powers of the particle spacing r . Similarly, hydrodynamic interactions between particles undergoing Brownian motion decay as 1 /r in bulk, and are assumed to decay in small channels. Such interactions are ubiquitous in biological and technological systems. Here we confine two particles undergoing Brownian motion in narrow, microfluidic channels and study their coupling through hydrodynamic interactions. Our experiments show that the hydrodynamic particle-particle interactions are distance independent in these channels. This finding is of fundamental importance for the interpretation of experiments where dense mixtures of particles or molecules diffuse through finite length, water-filled channels or pore networks.

  6. Nondecaying Hydrodynamic Interactions along Narrow Channels.

    PubMed

    Misiunas, Karolis; Pagliara, Stefano; Lauga, Eric; Lister, John R; Keyser, Ulrich F

    2015-07-17

    Particle-particle interactions are of paramount importance in every multibody system as they determine the collective behavior and coupling strength. Many well-known interactions such as electrostatic, van der Waals, or screened Coulomb interactions, decay exponentially or with negative powers of the particle spacing r. Similarly, hydrodynamic interactions between particles undergoing Brownian motion decay as 1/r in bulk, and are assumed to decay in small channels. Such interactions are ubiquitous in biological and technological systems. Here we confine two particles undergoing Brownian motion in narrow, microfluidic channels and study their coupling through hydrodynamic interactions. Our experiments show that the hydrodynamic particle-particle interactions are distance independent in these channels. This finding is of fundamental importance for the interpretation of experiments where dense mixtures of particles or molecules diffuse through finite length, water-filled channels or pore networks. PMID:26230830

  7. Hydrodynamics of bacterial colonies: A model

    NASA Astrophysics Data System (ADS)

    Lega, J.; Passot, T.

    2003-03-01

    We propose a hydrodynamic model for the evolution of bacterial colonies growing on soft agar plates. This model consists of reaction-diffusion equations for the concentrations of nutrients, water, and bacteria, coupled to a single hydrodynamic equation for the velocity field of the bacteria-water mixture. It captures the dynamics inside the colony as well as on its boundary and allows us to identify a mechanism for collective motion towards fresh nutrients, which, in its modeling aspects, is similar to classical chemotaxis. As shown in numerical simulations, our model reproduces both usual colony shapes and typical hydrodynamic motions, such as the whirls and jets recently observed in wet colonies of Bacillus subtilis. The approach presented here could be extended to different experimental situations and provides a general framework for the use of advection-reaction-diffusion equations in modeling bacterial colonies.

  8. Hydrodynamic instability in warped astrophysical discs

    NASA Astrophysics Data System (ADS)

    Ogilvie, Gordon I.; Latter, Henrik N.

    2013-08-01

    Warped astrophysical discs are usually treated as laminar viscous flows, which have anomalous properties when the disc is nearly Keplerian and the viscosity is small: fast horizontal shearing motions and large torques are generated, which cause the warp to evolve rapidly, in some cases at a rate that is inversely proportional to the viscosity. However, these flows are often subject to a linear hydrodynamic instability, which may produce small-scale turbulence and modify the large-scale dynamics of the disc. We use a warped shearing sheet to compute the oscillatory laminar flows in a warped disc and to analyse their linear stability by the Floquet method. We find widespread hydrodynamic instability deriving from the parametric resonance of inertial waves. Even very small, unobservable warps in nearly Keplerian discs of low viscosity can be expected to generate hydrodynamic turbulence, or at least wave activity, by this mechanism.

  9. Toward a Fully Consistent Radiation Hydrodynamics

    SciTech Connect

    Castor, J I

    2009-07-07

    Dimitri Mihalas set the standard for all work in radiation hydrodynamics since 1984. The present contribution builds on 'Foundations of Radiation Hydrodynamics' to explore the relativistic effects that have prevented having a consistent non-relativistic theory. Much of what I have to say is in FRH, but the 3-D development is new. Results are presented for the relativistic radiation transport equation in the frame obtained by a Lorentz boost with the fluid velocity, and the exact momentum-integrated moment equations. The special-relativistic hydrodynamic equations are summarized, including the radiation contributions, and it is shown that exact conservation is obtained, and certain puzzles in the non-relativistic radhydro equations are explained.

  10. The Discrete Geometric Conservation Law and the Nonlinear Stability of ALE Schemes for the Solution of Flow Problems on Moving Grids

    NASA Astrophysics Data System (ADS)

    Farhat, Charbel; Geuzaine, Philippe; Grandmont, Céline

    2001-12-01

    Discrete geometric conservation laws (DGCLs) govern the geometric parameters of numerical schemes designed for the solution of unsteady flow problems on moving grids. A DGCL requires that these geometric parameters, which include among others grid positions and velocities, be computed so that the corresponding numerical scheme reproduces exactly a constant solution. Sometimes, this requirement affects the intrinsic design of an arbitrary Lagrangian Eulerian (ALE) solution method. In this paper, we show for sample ALE schemes that satisfying the corresponding DGCL is a necessary and sufficient condition for a numerical scheme to preserve the nonlinear stability of its fixed grid counterpart. We also highlight the impact of this theoretical result on practical applications of computational fluid dynamics.

  11. Scaling laws in chiral hydrodynamic turbulence

    NASA Astrophysics Data System (ADS)

    Yamamoto, Naoki

    2016-06-01

    We study the turbulent regime of chiral (magneto)hydrodynamics for charged and neutral matter with chirality imbalance. We find that the chiral magnetohydrodynamics for charged plasmas possesses a unique scaling symmetry, only without fluid helicity under the local charge neutrality. We also find a different type of unique scaling symmetry in the chiral hydrodynamics for neutral matter with fluid helicity in the inertial range. We show that these symmetries dictate the self-similar inverse cascade of the magnetic and kinetic energies. Our results imply the possible inverse energy cascade in core-collapse supernovae due to the chiral transport of neutrinos.

  12. The quantum hydrodynamic model for semiconductor devices

    NASA Astrophysics Data System (ADS)

    Gardner, Carl L.

    1995-02-01

    Quantum semiconductor devices are playing an increasingly important role in advanced microelectronic applications, including multiple-state logic and memory devices. To model quantum devices, the classical hydrodynamic model for semiconductor devices can be extended to include O(h(2)) quantum corrections. This proposal focused on theoretical and computational investigations of the flow of electrons in semiconductor devices based on the quantum hydrodynamic model. The development of efficient, robots numerical methods for the QHD model in one and two spatial dimensions we also emphasized.

  13. Hydrodynamic Simulations with the Godunov SPH

    NASA Astrophysics Data System (ADS)

    Borgani, S.; Murante, G.; Brunino, R.; Cha, S.-H.

    2012-07-01

    We present results based on an implementation of the Godunov Smoothed Particle Hydrodynamics (GSPH). We carry out controlled hydrodynamical three-dimensional tests, namely the Sod shock tube and the development of Kelvin-Helmholtz instabilities in a shear flow test. The results of our tests demonstrate GSPH provides a much improved description of contact discontinuities, with respect to SPH, and is able to follow the development of gas-dynamical instabilities, such as the Kevin-Helmholtz and the Rayleigh-Taylor ones.

  14. Bounce-free spherical hydrodynamic implosion

    SciTech Connect

    Kagan, Grigory; Tang Xianzhu; Hsu, Scott C.; Awe, Thomas J.

    2011-12-15

    In a bounce-free spherical hydrodynamic implosion, the post-stagnation hot core plasma does not expand against the imploding flow. Such an implosion scheme has the advantage of improving the dwell time of the burning fuel, resulting in a higher fusion burn-up fraction. The existence of bounce-free spherical implosions is demonstrated by explicitly constructing a family of self-similar solutions to the spherically symmetric ideal hydrodynamic equations. When applied to a specific example of plasma liner driven magneto-inertial fusion, the bounce-free solution is found to produce at least a factor of four improvement in dwell time and fusion energy gain.

  15. Supernova hydrodynamics experiments using the Nova laser

    SciTech Connect

    Remington, B.A.; Glendinning, S.G.; Estabrook, K.; Wallace, R.J.; Rubenchik, A.; Kane, J.; Arnett, D.; Drake, R.P.; McCray, R.

    1997-04-01

    We are developing experiments using the Nova laser to investigate two areas of physics relevant to core-collapse supernovae (SN): (1) compressible nonlinear hydrodynamic mixing and (2) radiative shock hydrodynamics. In the former, we are examining the differences between the 2D and 3D evolution of the Rayleigh-Taylor instability, an issue critical to the observables emerging from SN in the first year after exploding. In the latter, we are investigating the evolution of a colliding plasma system relevant to the ejecta-stellar wind interactions of the early stages of SN remnant formation. The experiments and astrophysical implications are discussed.

  16. Inflate, Pause, Erupt, Recharge: the 2008 Alu eruption in the Erta ‘Ale volcanic system (Ethiopia)

    NASA Astrophysics Data System (ADS)

    Pagli, C.; Wright, T. J.; Ebinger, C. J.; Barnie, T. D.; Ayele, A.

    2009-12-01

    The Alu volcano is located within the Erta ‘Ale volcanic system in northern Afar (Ethiopia), about 30 km to the north of Erta ‘Ale volcano whose summit caldera hosts a persistent lava lake. On 3rd November 2008 a fissure eruption started east of Alu volcano. An unprecedented InSAR dataset, seismic records and other space satellite imagery allow us to study the temporal and spatial evolution of magma preceding, during and after the eruption. We use InSAR images from five tracks of the Envisat satellite both in descending ad ascending orbits. Small pre-eruptive inflation 3 cm/month started at Alu in July but had ceased by September 10. There was no deformation for around a month before the eruption began on November 3, 2008 at 11:10 GMT. During the eruption over 1 m of subsidence was observed at two distinct locations: at Alu and a volcanic ridge 3 km south of Alu. The co-eruptive subsidence continued for around 16 days at Alu, before deflation reversed into inflation. A swarm of earthquakes, some with magnitude (ml) > 4, occurred along the border fault escarpment, ~ 40 km west of Alu, at 22:00 GMT on November 2, and within ~4 hours a seismic activity started around Alu, leading to the eruption. The deformation was modelled with a Mogi source under Alu and a Sill under the ridge, undergoing different undergoing different volume changes from July 2008 to June 2009. In order to find the best-fit model parameters, first we modelled few selected co-eruptive interferograms with a non-linear inversion. Then, keeping fixed the model geometries we inverted a total of ~40 interferograms for the time-dependent volume change of the Mogi source and the opening of the sill, using a least-squares inversion. Results indicate that a small magma volume was intruded into Alu July-September but a time lag of ~ 1 month occurred between intrusion and eruption. Martin et al. (2008) used petrological evidence to suggest that fresh magma intruded into a magma chamber can cause volatile

  17. ALEGRA -- code validation: Experiments and simulations

    SciTech Connect

    Chhabildas, L.C.; Konrad, C.H.; Mosher, D.A.; Reinhart, W.D; Duggins, B.D.; Rodeman, R.; Trucano, T.G.; Summers, R.M.; Peery, J.S.

    1998-03-16

    In this study, the authors are providing an experimental test bed for validating features of the ALEGRA code over a broad range of strain rates with overlapping diagnostics that encompass the multiple responses. A unique feature of the Arbitrary Lagrangian Eulerian Grid for Research Applications (ALEGRA) code is that it allows simultaneous computational treatment, within one code, of a wide range of strain-rates varying from hydrodynamic to structural conditions. This range encompasses strain rates characteristic of shock-wave propagation (10{sup 7}/s) and those characteristic of structural response (10{sup 2}/s). Most previous code validation experimental studies, however, have been restricted to simulating or investigating a single strain-rate regime. What is new and different in this investigation is that the authors have performed well-instrumented experiments which capture features relevant to both hydrodynamic and structural response in a single experiment. Aluminum was chosen for use in this study because it is a well characterized material--its EOS and constitutive material properties are well defined over a wide range of loading rates. The current experiments span strain rate regimes of over 10{sup 7}/s to less than 10{sup 2}/s in a single experiment. The input conditions are extremely well defined. Velocity interferometers are used to record the high strain-rate response, while low strain rate data were collected using strain gauges.

  18. A Review and Critique of the 2008 United States "National Report on the Development and State of the Art of Adult Learning and Education" (ALE)

    ERIC Educational Resources Information Center

    Hill, Robert J.; Daigle, Elizabeth Anne; Graybeal, Lesley; Walker, Wayland; Avalon, Christian; Fowler, Nan; Massey, Michael W.

    2008-01-01

    This study is a review and a critique of the 2008 U.S. "National Report on the Development and State of the Art of Adult Learning and Education" (ALE) prepared by the U.S. Commission for UNESCO and the U.S. Department of Education as a preparatory document for CONFINTEA VI, the 6th International Conference on Adult Education. The study focuses on…

  19. Topology of 1-Acyl-sn-glycerol-3-phosphate Acyltransferases SLC1 and ALE1 and Related Membrane-bound O-Acyltransferases (MBOATs) of Saccharomyces cerevisiae*

    PubMed Central

    Pagac, Martin; de la Mora, Hector Vazquez; Duperrex, Cécile; Roubaty, Carole; Vionnet, Christine; Conzelmann, Andreas

    2011-01-01

    In yeast, phosphatidic acid, the biosynthetic precursor for all glycerophospholipids and triacylglycerols, is made de novo by the 1-acyl-sn-glycerol-3-phosphate acyltransferases Ale1p and Slc1p. Ale1p belongs to the membrane-bound O-acyltransferase (MBOAT) family, which contains many enzymes acylating lipids but also others that acylate secretory proteins residing in the lumen of the ER. A histidine present in a very short loop between two predicted transmembrane domains is the only residue that is conserved throughout the MBOAT gene family. The yeast MBOAT proteins of known function comprise Ale1p, the ergosterol acyltransferases Are1p and Are2p, and Gup1p, the last of which acylates lysophosphatidylinositol moieties of GPI anchors on ER lumenal GPI proteins. C-terminal topology reporters added to truncated versions of Gup1p yield a topology predicting a lumenal location of its uniquely conserved histidine 447 residue. The same approach shows that Ale1p and Are2p also have the uniquely conserved histidine residing in the ER lumen. Because these data raised the possibility that phosphatidic acid could be made in the lumen of the ER, we further investigated the topology of the second yeast 1-acyl-sn-glycerol-3-phosphate acyltransferase, Slc1p. The location of C-terminal topology reporters, microsomal assays probing the protease sensitivity of inserted tags, and the accessibility of natural or artificially inserted cysteines to membrane-impermeant alkylating agents all indicate that the most conserved motif containing the presumed active site histidine of Slc1p is oriented toward the ER lumen, whereas other conserved motifs are cytosolic. The implications of these findings are discussed. PMID:21849510

  20. A multi-dimensional high-order DG-ALE method based on gas-kinetic theory with application to oscillating bodies

    NASA Astrophysics Data System (ADS)

    Ren, Xiaodong; Xu, Kun; Shyy, Wei

    2016-07-01

    This paper presents a multi-dimensional high-order discontinuous Galerkin (DG) method in an arbitrary Lagrangian-Eulerian (ALE) formulation to simulate flows over variable domains with moving and deforming meshes. It is an extension of the gas-kinetic DG method proposed by the authors for static domains (X. Ren et al., 2015 [22]). A moving mesh gas kinetic DG method is proposed for both inviscid and viscous flow computations. A flux integration method across a translating and deforming cell interface has been constructed. Differently from the previous ALE-type gas kinetic method with piecewise constant mesh velocity at each cell interface within each time step, the mesh velocity variation inside a cell and the mesh moving and rotating at a cell interface have been accounted for in the finite element framework. As a result, the current scheme is applicable for any kind of mesh movement, such as translation, rotation, and deformation. The accuracy and robustness of the scheme have been improved significantly in the oscillating airfoil calculations. All computations are conducted in a physical domain rather than in a reference domain, and the basis functions move with the grid movement. Therefore, the numerical scheme can preserve the uniform flow automatically, and satisfy the geometric conservation law (GCL). The numerical accuracy can be maintained even for a largely moving and deforming mesh. Several test cases are presented to demonstrate the performance of the gas-kinetic DG-ALE method.

  1. The cruciform model of striate generation of the early VEP, re-illustrated, not revoked: a reply to Ales et al. (2013).

    PubMed

    Kelly, Simon P; Vanegas, M Isabel; Schroeder, Charles E; Lalor, Edmund C

    2013-11-15

    Here we summarize the points raised in our dialog with Ales and colleagues on the cortical generators of the early visual evoked potential (VEP), and offer observations on the results of additional simulations that were run in response to our original comment. For small stimuli placed at locations in the upper and lower visual field for which the human VEP has been well characterized, simulated scalp projections of each of the visual areas V1, V2 and V3 invert in polarity. However, the empirically measured, earliest VEP component, "C1," matches the simulated V1 generators in terms of polarity and topography, but not the simulated V2 and V3 generators. We thus conclude that, 1) consistent with the title of Ales et al. (2010a), polarity inversion on its own is not a sufficient criterion for inferring neuroelectric sources in primary visual cortex; but 2) inconsistent with additional claims made in Ales et al. (2010a), the simulated topographies provide additional evidence for - not against - the tenet that the C1 component is generated in V1. PMID:23735259

  2. Coupling hydrodynamic and wave propagation modeling for waveform modeling of SPE.

    NASA Astrophysics Data System (ADS)

    Larmat, C. S.; Steedman, D. W.; Rougier, E.; Delorey, A.; Bradley, C. R.

    2015-12-01

    The goal of the Source Physics Experiment (SPE) is to bring empirical and theoretical advances to the problem of detection and identification of underground nuclear explosions. This paper presents effort to improve knowledge of the processes that affect seismic wave propagation from the hydrodynamic/plastic source region to the elastic/anelastic far field thanks to numerical modeling. The challenge is to couple the prompt processes that take place in the near source region to the ones taking place later in time due to wave propagation in complex 3D geologic environments. In this paper, we report on results of first-principles simulations coupling hydrodynamic simulation codes (Abaqus and CASH), with a 3D full waveform propagation code, SPECFEM3D. Abaqus and CASH model the shocked, hydrodynamic region via equations of state for the explosive, borehole stemming and jointed/weathered granite. LANL has been recently employing a Coupled Euler-Lagrange (CEL) modeling capability. This has allowed the testing of a new phenomenological model for modeling stored shear energy in jointed material. This unique modeling capability has enabled highfidelity modeling of the explosive, the weak grout-filled borehole, as well as the surrounding jointed rock. SPECFEM3D is based on the Spectral Element Method, a direct numerical method for full waveform modeling with mathematical accuracy (e.g. Komatitsch, 1998, 2002) thanks to its use of the weak formulation of the wave equation and of high-order polynomial functions. The coupling interface is a series of grid points of the SEM mesh situated at the edge of the hydrodynamic code domain. Displacement time series at these points are computed from output of CASH or Abaqus (by interpolation if needed) and fed into the time marching scheme of SPECFEM3D. We will present validation tests and waveforms modeled for several SPE tests conducted so far, with a special focus on effect of the local topography.

  3. Fluid Film Bearing Code Development

    NASA Technical Reports Server (NTRS)

    1995-01-01

    The next generation of rocket engine turbopumps is being developed by industry through Government-directed contracts. These turbopumps will use fluid film bearings because they eliminate the life and shaft-speed limitations of rolling-element bearings, increase turbopump design flexibility, and reduce the need for turbopump overhauls and maintenance. The design of the fluid film bearings for these turbopumps, however, requires sophisticated analysis tools to model the complex physical behavior characteristic of fluid film bearings operating at high speeds with low viscosity fluids. State-of-the-art analysis and design tools are being developed at the Texas A&M University under a grant guided by the NASA Lewis Research Center. The latest version of the code, HYDROFLEXT, is a thermohydrodynamic bulk flow analysis with fluid compressibility, full inertia, and fully developed turbulence models. It can predict the static and dynamic force response of rigid and flexible pad hydrodynamic bearings and of rigid and tilting pad hydrostatic bearings. The Texas A&M code is a comprehensive analysis tool, incorporating key fluid phenomenon pertinent to bearings that operate at high speeds with low-viscosity fluids typical of those used in rocket engine turbopumps. Specifically, the energy equation was implemented into the code to enable fluid properties to vary with temperature and pressure. This is particularly important for cryogenic fluids because their properties are sensitive to temperature as well as pressure. As shown in the figure, predicted bearing mass flow rates vary significantly depending on the fluid model used. Because cryogens are semicompressible fluids and the bearing dynamic characteristics are highly sensitive to fluid compressibility, fluid compressibility effects are also modeled. The code contains fluid properties for liquid hydrogen, liquid oxygen, and liquid nitrogen as well as for water and air. Other fluids can be handled by the code provided that the

  4. A fast and explicit algorithm for simulating the dynamics of small dust grains with smoothed particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Price, Daniel J.; Laibe, Guillaume

    2015-07-01

    We describe a simple method for simulating the dynamics of small grains in a dusty gas, relevant to micron-sized grains in the interstellar medium and grains of centimetre size and smaller in protoplanetary discs. The method involves solving one extra diffusion equation for the dust fraction in addition to the usual equations of hydrodynamics. This `diffusion approximation for dust' is valid when the dust stopping time is smaller than the computational timestep. We present a numerical implementation using smoothed particle hydrodynamics that is conservative, accurate and fast. It does not require any implicit timestepping and can be straightforwardly ported into existing 3D codes.

  5. (Non)-dissipative hydrodynamics on embedded surfaces

    NASA Astrophysics Data System (ADS)

    Armas, Jay

    2014-09-01

    We construct the theory of dissipative hydrodynamics of uncharged fluids living on embedded space-time surfaces to first order in a derivative expansion in the case of codimension-1 surfaces (including fluid membranes) and the theory of non-dissipative hydrodynamics to second order in a derivative expansion in the case of codimension higher than one under the assumption of no angular momenta in transverse directions to the surface. This construction includes the elastic degrees of freedom, and hence the corresponding transport coefficients, that take into account transverse fluctuations of the geometry where the fluid lives. Requiring the second law of thermodynamics to be satisfied leads us to conclude that in the case of codimension-1 surfaces the stress-energy tensor is characterized by 2 hydrodynamic and 1 elastic independent transport coefficient to first order in the expansion while for codimension higher than one, and for non-dissipative flows, the stress-energy tensor is characterized by 7 hydrodynamic and 3 elastic independent transport coefficients to second order in the expansion. Furthermore, the constraints imposed between the stress-energy tensor, the bending moment and the entropy current of the fluid by these extra non-dissipative contributions are fully captured by equilibrium partition functions. This analysis constrains the Young modulus which can be measured from gravity by elastically perturbing black branes.

  6. Boundary conditions in tunneling via quantum hydrodynamics

    NASA Technical Reports Server (NTRS)

    Nassar, Antonio B.

    1993-01-01

    Via the hydrodynamical formulation of quantum mechanics, an approach to the problem of tunneling through sharp-edged potential barriers is developed. Above all, it is shown how more general boundary conditions follow from the continuity of mass, momentum, and energy.

  7. Hydrodynamic Issues in PAMS Mandrel Target Fabrication

    SciTech Connect

    McQuillan, B M; Paguio, R; Subramanian, P; Takagi, M; Zebib, A

    2003-08-27

    Imperfections in PAMS mandrels critically govern the quality of final ICF targets. Imperfections in the mandrels can have a wide range of origins. Here, they present observations of 3 types of imperfections, and data to support the proposal that hydrodynamic factors during the curing of the mandrel are potential causes of these imperfections.

  8. HYDRODYNAMIC ISSUES IN PAMS MANDREL TARGET FABRICATION

    SciTech Connect

    McQUILLAN,B.W; PAGUIO,R; SUBRAMANIAN,P; TAKAGI,M; ZEBIB,A

    2003-09-01

    OAK-B135 Imperfections in PAMS mandrels critically govern the quality of final ICF targets. Imperfections in the mandrels can have a wide range of origins. Here, they present observations of 3 types of imperfections, and data to support the proposal that hydrodynamic factors during the curing of the mandrel are potential causes of these imperfections.

  9. An analytical description of hydrodynamic instabilities

    NASA Astrophysics Data System (ADS)

    Bulanov, S. V.; Sasorov, P. V.

    The proper approach to the investigation of the nonlinear stage of hydrodynamic instabilities in a plasma has been discussed. Both the Buneman instability and the beam instability have been considered. A similarity between the nonlinear stage of the beam plasma instability and the process of self-modulation and self-focusing of nonlinear waves is revealed.

  10. Stabilizing geometry for hydrodynamic rotary seals

    SciTech Connect

    Dietle, Lannie L.; Schroeder, John E.

    2010-08-10

    A hydrodynamic sealing assembly including a first component having first and second walls and a peripheral wall defining a seal groove, a second component having a rotatable surface relative to said first component, and a hydrodynamic seal comprising a seal body of generally ring-shaped configuration having a circumference. The seal body includes hydrodynamic and static sealing lips each having a cross-sectional area that substantially vary in time with each other about the circumference. In an uninstalled condition, the seal body has a length defined between first and second seal body ends which varies in time with the hydrodynamic sealing lip cross-sectional area. The first and second ends generally face the first and second walls, respectively. In the uninstalled condition, the first end is angulated relative to the first wall and the second end is angulated relative to the second wall. The seal body has a twist-limiting surface adjacent the static sealing lip. In the uninstalled condition, the twist-limiting surface is angulated relative to the peripheral wall and varies along the circumference. A seal body discontinuity and a first component discontinuity mate to prevent rotation of the seal body relative to the first component.

  11. Chiral Magnetic Effect in Hydrodynamic Approximation

    NASA Astrophysics Data System (ADS)

    Zakharov, Valentin I.

    We review derivations of the chiral magnetic effect (ChME) in hydrodynamic approximation. The reader is assumed to be familiar with the basics of the effect. The main challenge now is to account for the strong interactions between the constituents of the fluid. The main result is that the ChME is not renormalized: in the hydrodynamic approximation it remains the same as for non-interacting chiral fermions moving in an external magnetic field. The key ingredients in the proof are general laws of thermodynamics and the Adler-Bardeen theorem for the chiral anomaly in external electromagnetic fields. The chiral magnetic effect in hydrodynamics represents a macroscopic manifestation of a quantum phenomenon (chiral anomaly). Moreover, one can argue that the current induced by the magnetic field is dissipation free and talk about a kind of "chiral superconductivity". More precise description is a quantum ballistic transport along magnetic field taking place in equilibrium and in absence of a driving force. The basic limitation is the exact chiral limit while temperature—excitingly enough—does not seemingly matter. What is still lacking, is a detailed quantum microscopic picture for the ChME in hydrodynamics. Probably, the chiral currents propagate through lower-dimensional defects, like vortices in superfluid. In case of superfluid, the prediction for the chiral magnetic effect remains unmodified although the emerging dynamical picture differs from the standard one.

  12. Hydrodynamic dispersion of microswimmers in suspension

    NASA Astrophysics Data System (ADS)

    Martin, Matthieu; Rafaï, Salima; Peyla, Philippe

    2014-11-01

    In our laboratory, we study hydrodynamics of suspensions of micro-swimmers. These micro-organisms are unicellular algae Chlamydomonas Rheinhardii which are able to swim by using their flagella. The swimming dynamics of these micro-swimmers can be seen as a random walk, in absence of any kind of interaction. In addition, these algae have the property of being phototactic, i.e. they swim towards the light. Combining this property with a hydrodynamic flow, we were able to reversibly separate algae from the rest of the fluid. But for sufficiently high volume fraction, these active particles interact with each other. We are now interested in how the coupling of hydrodynamic interactions between swimmers and phototaxis can modify the swimming dynamics at the scale of the suspension. To this aim, we conduct experiments in microfluidic devices to study the dispersion of the micro-organisms in a the liquid phase as a function of the volume fraction. We show that the dispersion of an assembly of puller type microswimmers is quantitatively affected by hydrodynamics interactions. Phd student.

  13. Hydrodynamically Driven Colloidal Assembly in Dip Coating

    NASA Astrophysics Data System (ADS)

    Colosqui, Carlos E.; Morris, Jeffrey F.; Stone, Howard A.

    2013-05-01

    We study the hydrodynamics of dip coating from a suspension and report a mechanism for colloidal assembly and pattern formation on smooth substrates. Below a critical withdrawal speed where the coating film is thinner than the particle diameter, capillary forces induced by deformation of the free surface prevent the convective transport of single particles through the meniscus beneath the film. Capillary-induced forces are balanced by hydrodynamic drag only after a minimum number of particles assemble within the meniscus. The particle assembly can thus enter the thin film where it moves at nearly the withdrawal speed and rapidly separates from the next assembly. The interplay between hydrodynamic and capillary forces produces periodic and regular structures below a critical ratio Ca2/3/Bo<0.7, where Ca and Bo are the capillary and Bond numbers, respectively. An analytical model and numerical simulations are presented for the case of two-dimensional flow with circular particles in suspension. The hydrodynamically driven assembly documented here is consistent with stripe pattern formations observed experimentally in dip coating.

  14. Thermodynamics, Hydrodynamics and Damping in Ultracold Gases

    NASA Astrophysics Data System (ADS)

    Chafin, Clifford

    Ultracold gases have provided experimental systems that span microscopic to macroscopic regimes of behavior and over a range of internal energy scales and interaction strengths that drive behavior from ballistic to hydrodynamic and degenerate to correlated. Here we will examine these systems from several points of view. First, we present a discussion from the standpoint of the evolution of a single many body wavefunction. In support of this picture we examine the longstanding vagueness surrounding measurement and thermalization and show the situation here is significantly better from this point of view than generally presented. The implications for how well defined a temperature can be achieved by various trap manipulation is discussed along with proposed experiments to distinguish these cases. Since hydrodynamic methods have worked well in some cases we then discuss the unitary limit for fermions with contact limited interactions. The scale invariance of the system implies limits on hydrodynamic behavior from which we extract bounds on viscous damping from free expansion and trap oscillation experiments. Linear response theory is used to probe the effect of quantum fluctuations on the viscosity and some nonuniversal contributions are derived. These show that the classical gradient expansion of hydrodynamics breaks down at lower than Burnett order, where problems with the classical expansions typically occur.

  15. Microflow Cytometers with Integrated Hydrodynamic Focusing

    PubMed Central

    Frankowski, Marcin; Theisen, Janko; Kummrow, Andreas; Simon, Peter; Ragusch, Hülya; Bock, Nicole; Schmidt, Martin; Neukammer, Jörg

    2013-01-01

    This study demonstrates the suitability of microfluidic structures for high throughput blood cell analysis. The microfluidic chips exploit fully integrated hydrodynamic focusing based on two different concepts: Two-stage cascade focusing and spin focusing (vortex) principle. The sample—A suspension of micro particles or blood cells—is injected into a sheath fluid streaming at a substantially higher flow rate, which assures positioning of the particles in the center of the flow channel. Particle velocities of a few m/s are achieved as required for high throughput blood cell analysis. The stability of hydrodynamic particle positioning was evaluated by measuring the pulse heights distributions of fluorescence signals from calibration beads. Quantitative assessment based on coefficient of variation for the fluorescence intensity distributions resulted in a value of about 3% determined for the micro-device exploiting cascade hydrodynamic focusing. For the spin focusing approach similar values were achieved for sample flow rates being 1.5 times lower. Our results indicate that the performances of both variants of hydrodynamic focusing suit for blood cell differentiation and counting. The potential of the micro flow cytometer is demonstrated by detecting immunologically labeled CD3 positive and CD4 positive T-lymphocytes in blood. PMID:23571670

  16. Effective hydrodynamics of black D3-branes

    NASA Astrophysics Data System (ADS)

    Emparan, Roberto; Hubeny, Veronika E.; Rangamani, Mukund

    2013-06-01

    The long-wavelength effective field theory of world-volume fluctuations of black D3-branes is shown to be a hydrodynamical system to leading order in a gradient expansion. We study the system on a fiducial `cutoff' surface: the fluctuating geometry imprints its dynamics on the surface via an induced stress tensor whose conservation encapsulates the hydrodynamical description. For a generic non-extremal D3-brane, as we move our cutoff surface from the asymptotically flat near-boundary region to the near-horizon region, this hydrodynamical system interpolates between a non-conformal relativistic fluid and a non-relativistic incompressible fluid. We also consider the dependence on the deviation from extremality of the D3-branes. In the near-extremal case we recover the description in terms of a conformal relativistic fluid encountered in the AdS/CFT context. We argue that this system allows us therefore to explore the various connections that have hitherto been suggested relating the dynamics of gravitational systems and fluid dynamics. In particular, we go on to show that the blackfold effective field theory approach allows us to capture this hydrodynamical behaviour and moreover subsumes the constructions encountered in the fluid/gravity correspondence and the black hole membrane paradigm, providing thereby a universal language to explore the effective dynamics of black branes.

  17. Simulating Brownian suspensions with fluctuating hydrodynamics

    NASA Astrophysics Data System (ADS)

    Delmotte, Blaise; Keaveny, Eric E.

    2015-12-01

    Fluctuating hydrodynamics has been successfully combined with several computational methods to rapidly compute the correlated random velocities of Brownian particles. In the overdamped limit where both particle and fluid inertia are ignored, one must also account for a Brownian drift term in order to successfully update the particle positions. In this paper, we present an efficient computational method for the dynamic simulation of Brownian suspensions with fluctuating hydrodynamics that handles both computations and provides a similar approximation as Stokesian Dynamics for dilute and semidilute suspensions. This advancement relies on combining the fluctuating force-coupling method (FCM) with a new midpoint time-integration scheme we refer to as the drifter-corrector (DC). The DC resolves the drift term for fluctuating hydrodynamics-based methods at a minimal computational cost when constraints are imposed on the fluid flow to obtain the stresslet corrections to the particle hydrodynamic interactions. With the DC, this constraint needs only to be imposed once per time step, reducing the simulation cost to nearly that of a completely deterministic simulation. By performing a series of simulations, we show that the DC with fluctuating FCM is an effective and versatile approach as it reproduces both the equilibrium distribution and the evolution of particulate suspensions in periodic as well as bounded domains. In addition, we demonstrate that fluctuating FCM coupled with the DC provides an efficient and accurate method for large-scale dynamic simulation of colloidal dispersions and the study of processes such as colloidal gelation.

  18. Livermore Unstructured Lagrange Explicit Shock Hydrodynamics

    2010-09-21

    LULESH v1.0 is a 3D unstructured Lagrange hydrodynamics simulation written specifically to solve a standard analytical test problem, known as the Sedov problem. In this problem, a quantum of energy is deposited into a gas and propagates through the gas over time.

  19. Neural correlates of personal goal processing during episodic future thinking and mind-wandering: An ALE meta-analysis.

    PubMed

    Stawarczyk, David; D'Argembeau, Arnaud

    2015-08-01

    The ability to imagine the future is a complex mental faculty that depends on an ensemble of cognitive processes supported by an extended set of brain regions. Our aim here was to shed light on one key component of future thinking--personal goal processing--and to determine its neural correlates during both directed and spontaneous forms of thoughts. To address this question, we performed separate ALE meta-analyses of neuroimaging studies of episodic future thinking (EFT), mind-wandering, and personal goal processing, and then investigated the commonalities and differences in brain activity between these three domains. The results showed that the three domains activated a common set of brain regions within the default network and, most notably, the medial prefrontal cortex. This finding suggests that the medial prefrontal cortex mediates the processing of personal goals during both EFT and mind-wandering. Differences in activation were also observed, and notably regions supporting cognitive control processes (the dorsolateral prefrontal cortex) were recruited to a lesser extent during mind-wandering than experimentally directed future thinking, suggesting that different kinds of self-generated thoughts may recruit varying levels of attentional control abilities. PMID:25931002

  20. Les fistules œsotrachéales congénitales isolées à propos de 2 cas

    PubMed Central

    El Biache, Imad; Lechqar, Maryem; Rami, Mohammed; Bouabdallah, Youssef

    2014-01-01

    Les auteurs rapportent 2 cas de fistules oesotrachéales isolées sans atrésie de l'oesophage, colligés au service de chirurgie pédiatrique au CHU Hassan II de Fès au Maroc entre 2008 et 2013. Il s'agit d'une anomalie rare représentée par un fin canal ascendant entre l'oesophage et la face postérieure de la trachée, à la hauteur du défilé cervico-thoracique. Elle se manifeste cliniquement par une symptomatologie respiratoire parfois digestive. Le diagnostic a été confirmé par le transit oesophagien dans les 2 cas et a permis aussi de déterminer le siège de la fistule. Le traitement était chirurgical, il a permis de supprimer la communication anormale entre l'oesophage et la trachée par un abord cervical avec interposition musculaire dans les 2 cas. Les suites post-opératoires et l’évolution à long terme étaient simples. Le but de ce travail est d'exposer les différents moyens diagnostique et thérapeutique. PMID:25328600

  1. A hydrodynamic treatment of the cold dark matter cosmological scenario

    NASA Technical Reports Server (NTRS)

    Cen, Renyue; Ostriker, Jeremiah

    1992-01-01

    The evolution of structure in a postrecombination Friedmann-Robertson-Walker universe containing both gaseous baryons and cold dark matter (CDM) is studied by means of an Eulerian code coupled with a standard particle-mesh code. Ionization state and radiative opacity are calculated in detail, and the hydrodynamic simulations make it possible to compute properties of gas distribution on scales larger than three cell sizes. The model yields a soft X-ray background consistent with the latest cosmic nucleosynthesis values, and can accurately reproduce the galaxy-galaxy two-point correlation. The rate of galaxy formation peaks at a relatively late epoch. With regard to mass function, the smallest objects are stabilized against collapse by thermal energy: the mass-weighted mass spectrum peaks in the vicinity of m(b) = 10 exp 9.2 solar masses with a reasonable fit to the Schecter luminosity function if the baryon mass to blue light ratio is approximately 4. Overall, the simulations provide strong support for the CMD scenario. Of particular interest is that, while the baryons are not biased on scales greater than 1/h Mpc, the galaxies are, and that the 'galaxies' have a correlation function of the required slope and the correct amplitude.

  2. Numeric spectral radiation hydrodynamic calculations of supernova shock breakouts

    SciTech Connect

    Sapir, Nir; Halbertal, Dorri

    2014-12-01

    We present here an efficient numerical scheme for solving the non-relativistic one-dimensional radiation-hydrodynamics equations including inelastic Compton scattering, which is not included in most codes and is crucial for solving problems such as shock breakout. The devised code is applied to the problems of a steady-state planar radiation mediated shock (RMS) and RMS breakout from a stellar envelope. The results are in agreement with those of a previous work on shock breakout, in which Compton equilibrium between matter and radiation was assumed and the 'effective photon' approximation was used to describe the radiation spectrum. In particular, we show that the luminosity and its temporal dependence, the peak temperature at breakout, and the universal shape of the spectral fluence derived in this earlier work are all accurate. Although there is a discrepancy between the spectral calculations and the effective photon approximation due to the inaccuracy of the effective photon approximation estimate of the effective photon production rate, which grows with lower densities and higher velocities, the difference in peak temperature reaches only 30% for the most discrepant cases of fast shocks in blue supergiants. The presented model is exemplified by calculations for supernova 1987A, showing the detailed evolution of the burst spectrum. The incompatibility of the stellar envelope shock breakout model results with observed properties of X-ray flashes (XRFs) and the discrepancy between the predicted and observed rates of XRFs remain unexplained.

  3. Simulation of fabrication variations in supernova hydrodynamics experiments

    NASA Astrophysics Data System (ADS)

    Budde, A.; Drake, R. P.; Kuranz, C. C.; Grosskopf, M. J.; Plewa, T.; Hearn, N. C.

    2010-06-01

    Recent experiments at the Omega laser facility have used ˜4.5 kJ of energy to create a blast wave similar to the one that occurs in a core-collapse supernova. In the experiment, the blast wave crosses an interface with a drop in density similar to the He-H interface in a supernova, which induces the growth of a machined perturbation on the interface surface due to the Rayleigh-Taylor instability. These experiments have exhibited different morphology than our simulations predict. It has been hypothesized that such differences may be the result of unintended structures created in the target fabrication process. We have used 2D Cartesian simulations to model such fabrication variations using a branch of the hydrodynamic code FLASH. We have studied the convergence of these numerical models and developed analysis techniques to gauge and compare the impact each variation has on numerical results. In addition to this, we have implemented and verified a new viscosity package for our code. These accomplishments have allowed us to perform a thorough analysis of the effects that such fabrication variations have on our results through the use of numerical simulations.

  4. Beyond Hydrodynamics via a Fluid Element PIC algorithm, GaPH

    NASA Astrophysics Data System (ADS)

    Bateson, William; Hewett, Dennis; Lambert, Michael

    1996-11-01

    For strongly-driven gas and plasma systems, issues of interpenetration and turbulence have led to difficulties with fluid models. For example, a Maxwell distribution within the finite volume could miss the interpenetration and shear regions between two fluids. To address these and other issues, we have extended our Grid and Particle Hydrodynamics (GaPH), a fluid element PIC code, beyond the initial high-precision, 1-D collisionless solutions[2] to 2-D with both binary and viscous drag collisions. The GaPH algorithm still aggressively probes for emerging phase space features by fitting new "particles" to the "hydrodynamic" evolution of individual particles and aggressively merges to preserves economy if interesting features fail to materialize. Recent extensions add collisonal diffusion to the hydrodynamics. Through these and other extensions, GaPH approximates Boltzmann transport thus leaving the fluid model assumption of a local Maxwell distribution behind. [1] This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract W-7405-Eng-48 and by Sandia National Laboratory under Contract DE-AC04-94AL85000. [2] "Beyond Hydrodynamics via Fluid Element Particle-In-Cell", WB Bateson and DW Hewett, (submitted J. Comp. Phys. July 1996).

  5. Numerical investigation of hydrodynamics behaviour of melt layer during laser cutting of steel

    NASA Astrophysics Data System (ADS)

    Tamsaout, Toufik; Amara, El-Hachemi

    2014-10-01

    Understanding of the melt layer hydrodynamic behaviour during laser-cutting process under gas jet assistance is of high importance for cut quality control. In the present work, a numerical model is developed to calculate the three-dimensional behaviour of the melt flow on the kerf front, while an inert gas jet interacts with the melt film. Fluent CFD code is used to solve the governing hydrodynamic equations by finite volume method. The results show that the melt flow on the kerf front reveals a strong instability, which depends on the cutting speed and on the gas jet velocity. Global flow behaviour (gas and molten metal flows) computed using a laminar model, reveals oscillations of the gas-metal liquid interface, which is assimilated to Kelvin-Helmholtz instability. The origin of this instability is discussed in terms of instabilities in thermal dynamics and hydrodynamics. Instability in thermal dynamics is related to the localized melting, while the instability in hydrodynamics is governed by forces balance between gas and resistant surface tension.

  6. Testing different formulations of leading-order anisotropic hydrodynamics

    NASA Astrophysics Data System (ADS)

    Tinti, Leonardo; Ryblewski, Radoslaw; Florkowski, Wojciech; Strickland, Michael

    2016-02-01

    A recently obtained set of the equations for leading-order (3+1)D anisotropic hydrodynamics is tested against exact solutions of the Boltzmann equation with the collisional kernel treated in the relaxation time approximation. In order to perform detailed comparisons, the new anisotropic hydrodynamics equations are reduced to the boost-invariant and transversally homogeneous case. The agreement with the exact solutions found using the new anisotropic hydrodynamics equations is similar to that found using previous, less general formulations of anisotropic hydrodynamics. In addition, we find that, when compared to a state-of-the-art second-order viscous hydrodynamics framework, leading-order anisotropic hydrodynamics better reproduces the exact solution for the pressure anisotropy and gives comparable results for the bulk pressure evolution. Finally, we compare the transport coefficients obtained using linearized anisotropic hydrodynamics with results obtained using second-order viscous hydrodynamics.

  7. Codes with special correlation.

    NASA Technical Reports Server (NTRS)

    Baumert, L. D.

    1964-01-01

    Uniform binary codes with special correlation including transorthogonality and simplex code, Hadamard matrices and difference sets uniform binary codes with special correlation including transorthogonality and simplex code, Hadamard matrices and difference sets

  8. An ALE Based FE Formulation for the 3D Numerical Simulation of Fineblanking Processes

    NASA Astrophysics Data System (ADS)

    Manopulo, Niko; Tong, Longchang; Hora, Pavel

    2010-06-01

    Fineblanking is a manufacturing process which allows the mass production of blanked products with superior surface quality. The 3D numerical simulation of this particularly precise process is however challenging. This is because quality-critical tool features such as the die clearance and the shape of the cutting edges have dimensions up to two orders of magnitude smaller than the average part dimensions. If conventional Updated Lagrange codes are used, a very high FE mesh resolution becomes a must in order to accurately represent the surface evolution along the edge, which in turn makes the computation unfeasible. The methodology presented in this paper makes use of the Arbitrary Lagrangian Eulerian FE Formulation in order to keep control over the mesh region in contact with the tools. This way an optimal FE mesh can be guaranteed throughout the computation. This not only reduces the computational cost considerably, but also avoids mesh distortion along the cutting edge, allowing an accurate representation of the tool features. This approach will be used in conjunction to the stress limit criterion delineated in order to predict material failure in fine blanked products. Numerical results will be validated against the experiments carried out with a specially designed fineblanking tool in use at our institute.

  9. Error-correction coding

    NASA Technical Reports Server (NTRS)

    Hinds, Erold W. (Principal Investigator)

    1996-01-01

    This report describes the progress made towards the completion of a specific task on error-correcting coding. The proposed research consisted of investigating the use of modulation block codes as the inner code of a concatenated coding system in order to improve the overall space link communications performance. The study proposed to identify and analyze candidate codes that will complement the performance of the overall coding system which uses the interleaved RS (255,223) code as the outer code.

  10. Collaborative Comparison of High-Energy-Density Physics Codes

    NASA Astrophysics Data System (ADS)

    Fatenejad, M.; Fryer, C.; Fryxell, B.; Lamb, D.; Myra, E.; Wohlbier, J.

    2011-10-01

    We will describe a collaborative effort involving the Flash Center for Computational Science, The Center for Radiative Shock Hydrodynamics (CRASH), LANL, and LLNL to compare several sophisticated radiation-hydrodynamics codes on a variety of HEDP test problems and experiments. Currently we are comparing efforts to simulate ongoing radiative shock experiments being conducted by CRASH at the OMEGA laser facility that are relevant to a wide range of astrophysical problems. The experiments drive a collapsed planar radiative shock through a Xenon-filled shock tube. Attempts to simulate these experiments have uncovered various challenges to obtaining agreement with experimental results. We will present the results of code-to-code comparisons that have enabled us to understand the impact of differences in numerical methods, physical approximations, microphysical parameters, etc. This work was supported in part by the US Department of Energy.

  11. Hydrodynamic Simulations and Tomographic Reconstructions of the Intergalactic Medium

    NASA Astrophysics Data System (ADS)

    Stark, Casey William

    The Intergalactic Medium (IGM) is the dominant reservoir of matter in the Universe from which the cosmic web and galaxies form. The structure and physical state of the IGM provides insight into the cosmological model of the Universe, the origin and timeline of the reionization of the Universe, as well as being an essential ingredient in our understanding of galaxy formation and evolution. Our primary handle on this information is a signal known as the Lyman-alpha forest (or Ly-alpha forest) -- the collection of absorption features in high-redshift sources due to intervening neutral hydrogen, which scatters HI Ly-alpha photons out of the line of sight. The Ly-alpha forest flux traces density fluctuations at high redshift and at moderate overdensities, making it an excellent tool for mapping large-scale structure and constraining cosmological parameters. Although the computational methodology for simulating the Ly-alpha forest has existed for over a decade, we are just now approaching the scale of computing power required to simultaneously capture large cosmological scales and the scales of the smallest absorption systems. My thesis focuses on using simulations at the edge of modern computing to produce precise predictions of the statistics of the Ly-alpha forest and to better understand the structure of the IGM. In the first part of my thesis, I review the state of hydrodynamic simulations of the IGM, including pitfalls of the existing under-resolved simulations. Our group developed a new cosmological hydrodynamics code to tackle the computational challenge, and I developed a distributed analysis framework to compute flux statistics from our simulations. I present flux statistics derived from a suite of our large hydrodynamic simulations and demonstrate convergence to the per cent level. I also compare flux statistics derived from simulations using different discretizations and hydrodynamic schemes (Eulerian finite volume vs. smoothed particle hydrodynamics) and

  12. Two-temperature hydrodynamics of laser-generated ultrashort shock waves in elasto-plastic solids

    NASA Astrophysics Data System (ADS)

    Ilnitsky, Denis K.; Khokhlov, Viktor A.; Inogamov, Nail A.; Zhakhovsky, Vasily V.; Petrov, Yurii V.; Khishchenko, Konstantin V.; Migdal, Kirill P.; Anisimov, Sergey I.

    2014-05-01

    Shock-wave generation by ultrashort laser pulses opens new doors for study of hidden processes in materials happened at an atomic-scale spatiotemporal scales. The poorly explored mechanism of shock generation is started from a short-living two-temperature (2T) state of solid in a thin surface layer where laser energy is deposited. Such 2T state represents a highly non-equilibrium warm dense matter having cold ions and hot electrons with temperatures of 1-2 orders of magnitude higher than the melting point. Here for the first time we present results obtained by our new hybrid hydrodynamics code combining detailed description of 2T states with a model of elasticity together with a wide-range equation of state of solid. New hydro-code has higher accuracy in the 2T stage than molecular dynamics method, because it includes electron related phenomena including thermal conduction, electron-ion collisions and energy transfer, and electron pressure. From the other hand the new code significantly improves our previous version of 2T hydrodynamics model, because now it is capable of reproducing the elastic compression waves, which may have an imprint of supersonic melting like as in MD simulations. With help of the new code we have solved a difficult problem of thermal and dynamic coupling of a molten layer with an uniaxially compressed elastic solid. This approach allows us to describe the recent femtosecond laser experiments.

  13. The simulation of a criticality accident excursion occurring in a simple fast metal system using the coupled neutronic-hydrodynamic method

    SciTech Connect

    Myers, W.L.

    1996-12-31

    Analysis of a criticality accident scenario occuring in a simple fast metal system using the coupled neutronic-hydrodynamic method is demonstrated by examining the last Godiva-I criticality accident. The basis tools and information for creating a coupled neutronic-hydrodynamic code are presented. Simplifying assumptions and approximations for creating an idealized model for the Godiva-I system are discussed. Estimates of the total energy generation and the maximum attainable kinetic energy yield are the most important results that are obtained from the code. With modifications, the methodology presented in this paper can be extended to analyze criticality accident excursions in other kinds of nuclear systems.

  14. 78 FR 9907 - Hydrodynamics, Inc.; Notice Denying Late Intervention

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-12

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Hydrodynamics, Inc.; Notice Denying Late Intervention On June 24, 2010, Commission staff issued a three-year preliminary permit to Hydrodynamics, Inc. (Hydrodynamics) to study...

  15. Influence of hydrodynamic interactions on mechanical unfolding of proteins

    NASA Astrophysics Data System (ADS)

    Szymczak, P.; Cieplak, Marek

    2007-07-01

    We incorporate hydrodynamic interactions in a structure-based model of ubiquitin and demonstrate that the hydrodynamic coupling may reduce the peak force when stretching the protein at constant speed, especially at larger speeds. Hydrodynamic interactions are also shown to facilitate unfolding at constant force and inhibit stretching by fluid flows.

  16. Hydrodynamic Moving-mesh Simulations of the Common Envelope Phase in Binary Stellar Systems

    NASA Astrophysics Data System (ADS)

    Ohlmann, Sebastian T.; Röpke, Friedrich K.; Pakmor, Rüdiger; Springel, Volker

    2016-01-01

    The common envelope (CE) phase is an important stage in binary stellar evolution. It is needed to explain many close binary stellar systems, such as cataclysmic variables, SN Ia progenitors, or X-ray binaries. To form the resulting close binary, the initial orbit has to shrink, thereby transferring energy to the primary giant's envelope that is hence ejected. The details of this interaction, however, are still not understood. Here, we present new hydrodynamic simulations of the dynamical spiral-in forming a CE system. We apply the moving-mesh code arepo to follow the interaction of a 1{M}⊙ compact star with a 2{M}⊙ red giant possessing a 0.4{M}⊙ core. The nearly Lagrangian scheme combines advantages of smoothed particle hydrodynamics and traditional grid-based hydrodynamic codes and allows us to capture also small flow features at high spatial resolution. Our simulations reproduce the initial transfer of energy and angular momentum from the binary core to the envelope by spiral shocks seen in previous studies, but after about 20 orbits a new phenomenon is observed. Large-scale flow instabilities are triggered by shear flows between adjacent shock layers. These indicate the onset of turbulent convection in the CE, thus altering the transport of energy on longer timescales. At the end of our simulation, only 8% of the envelope mass is ejected. The failure to unbind the envelope completely may be caused by processes on thermal timescales or unresolved microphysics.

  17. Density estimators in particle hydrodynamics. DTFE versus regular SPH

    NASA Astrophysics Data System (ADS)

    Pelupessy, F. I.; Schaap, W. E.; van de Weygaert, R.

    2003-05-01

    We present the results of a study comparing density maps reconstructed by the Delaunay Tessellation Field Estimator (DTFE) and by regular SPH kernel-based techniques. The density maps are constructed from the outcome of an SPH particle hydrodynamics simulation of a multiphase interstellar medium. The comparison between the two methods clearly demonstrates the superior performance of the DTFE with respect to conventional SPH methods, in particular at locations where SPH appears to fail. Filamentary and sheetlike structures form telling examples. The DTFE is a fully self-adaptive technique for reconstructing continuous density fields from discrete particle distributions, and is based upon the corresponding Delaunay tessellation. Its principal asset is its complete independence of arbitrary smoothing functions and parameters specifying the properties of these. As a result it manages to faithfully reproduce the anisotropies of the local particle distribution and through its adaptive and local nature proves to be optimally suited for uncovering the full structural richness in the density distribution. Through the improvement in local density estimates, calculations invoking the DTFE will yield a much better representation of physical processes which depend on density. This will be crucial in the case of feedback processes, which play a major role in galaxy and star formation. The presented results form an encouraging step towards the application and insertion of the DTFE in astrophysical hydrocodes. We describe an outline for the construction of a particle hydrodynamics code in which the DTFE replaces kernel-based methods. Further discussion addresses the issue and possibilities for a moving grid-based hydrocode invoking the DTFE, and Delaunay tessellations, in an attempt to combine the virtues of the Eulerian and Lagrangian approaches.

  18. An Adaptive Code for Radial Stellar Model Pulsations

    NASA Astrophysics Data System (ADS)

    Buchler, J. Robert; Kolláth, Zoltán; Marom, Ariel

    1997-09-01

    We describe an implicit 1-D adaptive mesh hydrodynamics code that is specially tailored for radial stellar pulsations. In the Lagrangian limit the code reduces to the well tested Fraley scheme. The code has the useful feature that unwanted, long lasting transients can be avoided by smoothly switching on the adaptive mesh features starting from the Lagrangean code. Thus, a limit cycle pulsation that can readily be computed with the relaxation method of Stellingwerf will converge in a few tens of pulsation cycles when put into the adaptive mesh code. The code has been checked with two shock problems, viz. Noh and Sedov, for which analytical solutions are known, and it has been found to be both accurate and stable. Superior results were obtained through the solution of the total energy (gravitational + kinetic + internal) equation rather than that of the internal energy only.

  19. OC5 Project Phase I: Validation of Hydrodynamic Loading on a Fixed Cylinder: Preprint

    SciTech Connect

    Robertson, A. N.; Wendt, F. F.; Jonkman, J. M.; Popko, W.; Vorpahl, F.; Stansberg, C. T.; Bachynski, E. E.; Bayati, I.; Beyer, F.; de Vaal, J. B.; Harries, R.; Yamaguchi, A.; Shin, H.; Kim, B.; van der Zee, T.; Bozonnet, P.; Aguilo, B.; Bergua, R.; Qvist, J.; Qijun, W.; Chen, X.; Guerinel, M.; Tu, Y.; Yutong, H.; Li, R.; Bouy, L.

    2015-04-23

    This paper describes work performed during the first half of Phase I of the Offshore Code Comparison Collaboration Continuation, with Correlation project (OC5). OC5 is a project run under the IEA Wind Research Task 30, and is focused on validating the tools used for modeling offshore wind systems. In this first phase, simulated responses from a variety of offshore wind modeling tools were modeling tools were validated against tank test data of a fixed, suspended cylinder (without a wind turbine) that was tested under regular and irregular wave conditions at MARINTEK. The results from this phase include an examination of different approaches one can use for defining and calibrating hydrodynamic coefficients for a model, and the importance of higher-order wave models in accurately modeling the hydrodynamic loads on offshore substructures.

  20. Influence of a postural change of the swimmer's head in hydrodynamic performances using 3D CFD.

    PubMed

    Popa, Catalin Viorel; Arfaoui, Ahlem; Fohanno, Stéphane; Taïar, Redha; Polidori, Guillaume

    2014-01-01

    This study deals with recent researches undertaken by the authors in the field of hydrodynamics of human swimming. The aim of this numerical study was to investigate the flow around the entire swimmer's body. The results presented in this article focus on the combination of a 3D computational fluid dynamics code and the use of the k-ω turbulence model, in the range of Reynolds numbers representative of a swimming level varying from national to international competition. Emphasis is placed on the influence of a postural change of the swimmer's head in hydrodynamic performances, which is directly related to the reduction of overall drag. These results confirm and complete those, less accurate, of a preliminary 2D study recently published by the authors and allow the authors to optimise the swimmer's head position in underwater swimming. PMID:22587390

  1. Coherent dynamic structure factors of strongly coupled plasmas: A generalized hydrodynamic approach

    NASA Astrophysics Data System (ADS)

    Luo, Di; Zhao, Bin; Hu, GuangYue; Gong, Tao; Xia, YuQing; Zheng, Jian

    2016-05-01

    A generalized hydrodynamic fluctuation model is proposed to simplify the calculation of the dynamic structure factor S(ω, k) of non-ideal plasmas using the fluctuation-dissipation theorem. In this model, the kinetic and correlation effects are both included in hydrodynamic coefficients, which are considered as functions of the coupling strength (Γ) and collision parameter (kλei), where λei is the electron-ion mean free path. A particle-particle particle-mesh molecular dynamics simulation code is also developed to simulate the dynamic structure factors, which are used to benchmark the calculation of our model. A good agreement between the two different approaches confirms the reliability of our model.

  2. Heavy flavor electron RAA and υ2 in event-by-event relativistic hydrodynamics

    NASA Astrophysics Data System (ADS)

    Prado, Caio A. G.; Cosentino, Mauro R.; Munhoz, Marcelo G.; Noronha, Jorge; Suaide, Alexandre A. P.

    2016-04-01

    In this work we investigate how event-by-event hydrodynamics fluctuations affect the nuclear suppression factor and elliptic flow of heavy flavor mesons and non-photonic electrons. We use a 2D+1 Lagrangian ideal hydrodynamic code [1, 2] on an event-by-event basis in order to compute local temperature and flow profiles. Using a strong coupling inspired energy loss parametrization [3] on top of the evolving space-time energy density distributions we are able to propagate the heavy quarks inside the medium until the freeze-out temperature is reached and a Pythia [4] modeling of hadronization takes place. The resulting D0 and heavy-flavor electron yield is compared with recent experimental data for R AA and υ 2 from the STAR and PHENIX collaborations [5-7]. In addition we present preditions for the higher order Fourier harmonic coefficients υ3(pt) of heavy-flavor electrons at Rhic’s collisions.

  3. Preasymptotic hydrodynamic dispersion as a quantitative probe of permeability.

    PubMed

    Brosten, Tyler R; Vogt, Sarah J; Seymour, Joseph D; Codd, Sarah L; Maier, Robert S

    2012-04-01

    We interpret a generalized short-time expansion of stochastic hydrodynamic dispersion dynamics in the case of small Reynolds number flow through macroscopically homogenous permeable porous media to directly determine hydrodynamic permeability. The approach allows determination of hydrodynamic permeability from pulsed field gradient spin-echo nuclear magnetic resonance measurement of the short-time effective hydrodynamic dispersion coefficient. The analytical expansion of asymptotic dynamics agrees with experimental NMR data and lattice Boltzmann simulation of hydrodynamic dispersion in consolidated random sphere pack media. PMID:22680531

  4. Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

    NASA Astrophysics Data System (ADS)

    Mehrnezhad, Ali; Bashir, Rashid; Park, Kidong

    2016-03-01

    Hydrodynamic loading greatly affects resonant characteristic of microfabricated structures immersed in a viscous fluid. In this letter, we demonstrate a technique to measure hydrodynamic loading on a MEMS resonator in a broad range of actuation frequency. The extracted hydrodynamic loading is in a good agreement with an analytical solution of an oscillating sphere, and a highly accurate model is developed for the hydrodynamic loading of the resonator. The developed technique can directly characterize the hydrodynamic loading of a microstructure with an arbitrary geometry and will facilitate the optimization of MEMS devices and AFM probes operating in a viscous fluid.

  5. 3D hydrodynamic lift force model for AREVA fuel assembly in EDF PWRs

    SciTech Connect

    Ekomie, S.; Bigot, J.; Dolleans, Ph.; Vallory, J.

    2007-07-01

    The accurate knowledge of the hydrodynamic lift force acting on a fuel assembly in PWR core is necessary to design the hold-down system of this assembly. This paper presents the model used by AREVA NP and EDF for computing this force. It results from a post-processing of sub-channel thermal-hydraulic codes respectively porous medium approach code THYC (EDF) and sub-channel type code FLICA III-F (AREVA NP). This model is based on the application of the Euler's theorem. Some hypotheses used to simplify the complexity of fuel assembly geometry are supported by CFD calculations. Then the model is compared to some experimental results obtained on a single fuel assembly inserted in the HERMES-T test facility located in CEA - Cadarache. Finally, the model is applied to calculate the lift force for the whole core. Various loading patterns including homogenous and mixed cores have been investigated and compared. (authors)

  6. An efficient approach to unstructured mesh hydrodynamics on the cell broadband engine

    SciTech Connect

    Ferenbaugh, Charles R

    2010-01-01

    Unstructured mesh physics for the Cell Broadband Engine (CBE) has received little or no attention to date, largely because the CBE architecture poses particular challenges for unstructured mesh algorithms. The most common SPU memory management strategies cannot be applied to the irregular memory access patterns of unstructured meshes, and the SPU vector instruction set does not support the indirect addressing needed by connectivity arrays. This paper presents an approach to unstructured mesh physics that addresses these challenges, by creating a new mesh data structure and reorganizing code to give efficient CBE performance. The approach is demonstrated on the FLAG production hydrodynamics code using standard test problems, and results show an average speedup of more than 5x over the original code.

  7. An efficient approach to unstructured mesh hydrodynamics on the cell broadband engine (u)

    SciTech Connect

    Ferenbaugh, Charles R

    2010-12-14

    Unstructured mesh physics for the Cell Broadband Engine (CBE) has received little or no attention to date, largely because the CBE architecture poses particular challenges for unstructured mesh algorithms. SPU memory management strategies such as data preloading cannot be applied to the irregular memory storage patterns of unstructured meshes; and the SPU vector instruction set does not support the indirect addressing needed by connectivity arrays. This paper presents an approach to unstructured mesh physics that addresses these challenges, by creating a new mesh data structure and reorganizing code to give efficient CBE performance. The approach is demonstrated on the FLAG production hydrodynamics code using standard test problems, and results show an average speedup of more than 5x over the original code.

  8. The Radiation Transport Conundrum in Radiation Hydrodynamics

    SciTech Connect

    Castor, J I

    2005-03-18

    The summary of this paper is: (1) The conundrum in the title is whether to treat radiation in the lab frame or the comoving frame in a radiation-hydrodynamic problem; (2) Several of the difficulties are associated with combining a somewhat relativistic treatment of radiation with a non-relativistic treatment of hydrodynamics; (3) The principal problem is a tradeoff between easily obtaining the correct diffusion limit and describing free-streaming radiation with the correct wave speed; (4) The computational problems of the comoving-frame formulation in more than one dimension, and the difficulty of obtaining both exact conservation and full u/c accuracy argue against this method; (5) As the interest in multi-D increases, as well as the power of computers, the lab-frame method is becoming more attractive; and (6) The Monte Carlo method combines the advantages of both lab-frame and comoving-frame approaches, its only disadvantage being cost.

  9. Hyperbolic metamaterial lens with hydrodynamic nonlocal response.

    PubMed

    Yan, Wei; Mortensen, N Asger; Wubs, Martijn

    2013-06-17

    We investigate the effects of hydrodynamic nonlocal response in hyperbolic metamaterials (HMMs), focusing on the experimentally realizable parameter regime where unit cells are much smaller than an optical wavelength but much larger than the wavelengths of the longitudinal pressure waves of the free-electron plasma in the metal constituents. We derive the nonlocal corrections to the effective material parameters analytically, and illustrate the noticeable nonlocal effects on the dispersion curves numerically. As an application, we find that the focusing characteristics of a HMM lens in the local-response approximation and in the hydrodynamic Drude model can differ considerably. In particular, the optimal frequency for imaging in the nonlocal theory is blueshifted with respect to that in the local theory. Thus, to detect whether nonlocal response is at work in a hyperbolic metamaterial, we propose to measure the near-field distribution of a hyperbolic metamaterial lens. PMID:23787690

  10. Stochastic Hydrodynamic Synchronization in Rotating Energy Landscapes

    NASA Astrophysics Data System (ADS)

    Koumakis, N.; Di Leonardo, R.

    2013-04-01

    Hydrodynamic synchronization provides a general mechanism for the spontaneous emergence of coherent beating states in independently driven mesoscopic oscillators. A complete physical picture of those phenomena is of definite importance to the understanding of biological cooperative motions of cilia and flagella. Moreover, it can potentially suggest novel routes to exploit synchronization in technological applications of soft matter. We demonstrate that driving colloidal particles in rotating energy landscapes results in a strong tendency towards synchronization, favoring states where all beads rotate in phase. The resulting dynamics can be described in terms of activated jumps with transition rates that are strongly affected by hydrodynamics leading to an increased probability and lifetime of the synchronous states. Using holographic optical tweezers we quantitatively verify our predictions in a variety of spatial configurations of rotors.

  11. A Hydrodynamical Mechanism for Generating Astrophysical Jets

    NASA Astrophysics Data System (ADS)

    Hernández, X.; Rendón, P. L.; Rodríguez-Mota, R. G.; Capella, A.

    2014-04-01

    Whenever in a classical accretion disk the thin disk approximation fails interior to a certain radius, a transition from Keplerian to radial infalling trajectories should occur. We show that this transition is actually expected to occur interior to a certain critical radius, provided surface density profiles are steeper than Sigma(R) ~ R(-1/2) , and further, that it probably corresponds to the observationally inferred phenomena of thick hot walls internally limiting the extent of many stellar accretion disks. Infalling trajectories will lead to the convergent focusing and concentration of matter towards the very central regions, most of which will simply be swallowed by the central object. We show through a perturbative hydrodynamical analysis, that this will naturally develop a well collimated pair of polar jets. A first analytic treatment of the problem described is given, proving the feasibility of purely hydrodynamical mechanisms for astrophysical jet generation.

  12. Structure and hydrodynamics of colloidal systems

    NASA Astrophysics Data System (ADS)

    Hayter, John B.

    1986-02-01

    Invited paperColloidal phases (for example, micellar solutions, latex suspensions, ferrofluids and microemulsions) provide excellent model systems with which to test structural and hydrodynamic theories of the liquid state. Interparticle potentials may be attractive or repulsive, and the experimentalist is often free to control the strength, range and symmetry of the interactions. Small-angle neutron scattering (SANS) and small-angle neutron spin-echo (SANSE) provide excellent complementary tools for studying the structure and time-dependence of these systems, where correlation lengths typically vary from about one to several tens of nm. Correlation times are usually in the nsec to μsec range, but may be of order minutes in certain systems. This paper will review some of the current theories and their recent experimental tests, using colloidal systems in which the direct interaction potentials may have spherical, dipolar or cylindrical symmetry and the hydrodynamic interactions may be weak or strong.

  13. Structure and hydrodynamics of colloidal systems

    NASA Astrophysics Data System (ADS)

    Hayter, J. B.

    1985-07-01

    Colloidal phases (for example, micellar solutions, latex suspensions, ferrofluids and microemulsions) provide excellent model systems with which to test structural and hydrodynamic theories of the liquid state. Interparticle potentials may be attractive or repulsive, and the experimentalist is often free to control the strength, range and symmetry of the interactions. Small-angle neutron scattering (SANS) and small-angle neutron spin-echo (SANSE) provide excellent complementary tools for studying the structure and time-dependence of these systems, where correlation lengths typically vary from about one to several tens of nm. Correlation times are usually in the nsec to (MU) sec range, but may be of order minutes in certain systems. This paper will review some of the current theories and their recent experimental tests, using colloidal systems in which the direct interaction potentials may have spherical, dipolar or cylindrical symmetry and the hydrodynamic interactions may be weak or strong.

  14. Scaling Laws for Hydrodynamically Equivalent Implosions

    NASA Astrophysics Data System (ADS)

    Murakami, Masakatsu

    2001-10-01

    The EPOC (equivalent physics of confinement) scenario for the proof of principle of high gain inertial confinement fusion is presented, where the key concept "hydrodynamically equivalent implosions" plays a crucial role. Scaling laws on the target and confinement parameters are derived by applying the Lie group analysis to the PDE (partially differential equations) chain of the hydrodynamic system. It turns out that the conventional scaling law based on adiabatic approximation significantly differs from one which takes such energy transport effect as electron heat conduction into account. Confinement plasma parameters of the hot spot such as the central temperature and the areal mass density at peak compression are obtained with a self-similar solution for spherical implosions.

  15. Modeling Reef Hydrodynamics to Predict Coral Bleaching

    NASA Astrophysics Data System (ADS)

    Bird, James; Steinberg, Craig; Hardy, Tom

    2005-11-01

    The aim of this study is to use environmental physics to predict water temperatures around and within coral reefs. Anomalously warm water is the leading cause for mass coral bleaching; thus a clearer understanding of the oceanographic mechanisms that control reef water temperatures will enable better reef management. In March 1998 a major coral bleaching event occurred at Scott Reef, a 40 km-wide lagoon 300 km off the northwest coast of Australia. Meteorological and coral cover observations were collected before, during, and after the event. In this study, two hydrodynamic models are applied to Scott Reef and validated against oceanographic data collected between March and June 2003. The models are then used to hindcast the reef hydrodynamics that led up to the 1998 bleaching event. Results show a positive correlation between poorly mixed regions and bleaching severity.

  16. Hydrodynamic synchronisation of optically driven rotors

    NASA Astrophysics Data System (ADS)

    Debono, Luke J.; Box, Stuart; Phillips, David B.; Simpson, Stephen H.; Hanna, Simon

    2015-08-01

    Hydrodynamic coupling is thought to play a role in the coordinated beating of cilia and flagella, and may inform the future design of artificial swimmers and pumps. In this study, optical tweezers are used to investigate the hydrodynamic coupling between a pair of driven oscillators. The theoretical model of Lenz and Ryskin [P. Lenz and A. Ryskin, Phys. Biol. 3, 285{294 (2006)] is experimentally recreated, in which each oscillator consists of a sphere driven in a circular trajectory. The optical trap position is maintained ahead of the sphere to provide a tangential driving force. The trap is also moved radially to harmonically constrain the sphere to the circular trajectory. Analytically, it has been shown that two oscillators of this type are able to synchronise or phase-lock under certain conditions. We explore the interplay between synchronisation mechanisms and find good agreement between experiment, theory and Brownian dynamics simulations.

  17. Hydrodynamics of charge fluctuations and balance functions

    NASA Astrophysics Data System (ADS)

    Ling, Bo; Springer, Todd; Stephanov, Mikhail

    2014-06-01

    We apply stochastic hydrodynamics to the study of charge-density fluctuations in QCD matter undergoing Bjorken expansion. We find that the charge-density correlations are given by a time integral over the history of the system, with the dominant contribution coming from the QCD crossover region where the change of susceptibility per entropy, χT /s, is most significant. We study the rapidity and azimuthal angle dependence of the resulting charge balance function using a simple analytic model of heavy-ion collision evolution. Our results are in agreement with experimental measurements, indicating that hydrodynamic fluctuations contribute significantly to the measured charge correlations in high-energy heavy-ion collisions. The sensitivity of the balance function to the value of the charge diffusion coefficient D allows us to estimate the typical value of this coefficient in the crossover region to be rather small, of the order of (2πT)-1, characteristic of a strongly coupled plasma.

  18. Hydrodynamics of ultra-relativistic bubble walls

    NASA Astrophysics Data System (ADS)

    Leitao, Leonardo; Mégevand, Ariel

    2016-04-01

    In cosmological first-order phase transitions, gravitational waves are generated by the collisions of bubble walls and by the bulk motions caused in the fluid. A sizeable signal may result from fast-moving walls. In this work we study the hydrodynamics associated to the fastest propagation modes, namely, ultra-relativistic detonations and runaway solutions. We compute the energy injected by the phase transition into the fluid and the energy which accumulates in the bubble walls. We provide analytic approximations and fits as functions of the net force acting on the wall, which can be readily evaluated for specific models. We also study the back-reaction of hydrodynamics on the wall motion, and we discuss the extrapolation of the friction force away from the ultra-relativistic limit. We use these results to estimate the gravitational wave signal from detonations and runaway walls.

  19. Filter-less submicron hydrodynamic size sorting.

    PubMed

    Fouet, M; Mader, M-A; Iraïn, S; Yanha, Z; Naillon, A; Cargou, S; Gué, A-M; Joseph, P

    2016-02-21

    We propose a simple microfluidic device able to separate submicron particles (critical size ∼0.1 μm) from a complex sample with no filter (minimum channel dimension being 5 μm) by hydrodynamic filtration. A model taking into account the actual velocity profile and hydrodynamic resistances enables prediction of the chip sorting properties for any geometry. Two design families are studied to obtain (i) small sizes within minutes (low-aspect ratio, two-level chip) and (ii) micron-sized sorting with a μL flow rate (3D architecture based on lamination). We obtain quantitative agreement of sorting performances both with experiments and with numerical solving, and determine the limits of the approach. We therefore demonstrate a passive, filter-less sub-micron size sorting with a simple, robust, and easy to fabricate design. PMID:26778818

  20. Impact of hydrodynamics on oral biofilm strength.

    PubMed

    Paramonova, E; Kalmykowa, O J; van der Mei, H C; Busscher, H J; Sharma, P K

    2009-10-01

    Mechanical removal of oral biofilms is ubiquitously accepted as the best way to prevent caries and periodontal diseases. Removal effectiveness strongly depends on biofilm strength. To investigate the influence of hydrodynamics on oral biofilm strength, we grew single- and multi-species biofilms of Streptococcus oralis J22, Actinomyces naeslundii TV14-J1, and full dental plaque at shear rates ranging from 0.1 to 50 1/sec and measured their compressive strength. Subsequently, biofilm architecture was evaluated by confocal laser scanning microscopy. Multi-species biofilms were stronger than single-species biofilms, with strength values ranging from 6 to 51 Pa and from 5 to 17 Pa, respectively. In response to increased hydrodynamic shear, biofilm strength decreased, and architecture changed from uniform carpet-like to more "fluffy" with higher thickness. S. oralis biofilms grown under variable shear of 7 and 50 1/sec possessed properties intermediate of those measured at the respective single shears. PMID:19783800