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Sample records for algal species composition

  1. Thermal effects on the growth and fatty acid composition of four harmful algal bloom species: Possible implications for ichthyotoxicity

    NASA Astrophysics Data System (ADS)

    Hyun, Bonggil; Ju, Se-Jong; Ko, Ah-Ra; Choi, Keun-Hyung; Jung, Seung Won; Jang, Pung-Guk; Jang, Min-Chul; Moon, Chang Ho; Shin, Kyoungsoon

    2016-09-01

    Little is known regarding how harmful algal bloom species respond to different temperatures in terms of fatty acid production. This study examined the effects of temperature on the growth rates, cell volumes, and fatty acid concentrations and compositions of four harmful algal bloom species (HABs), Akashiwo sanguinea, Alexandrium tamarense, Chattonella ovata, and Prorocentrum minimum. The HABs species were cultured at 15, 20, 25, and 30°C in a nutrient-enriched medium. Three of the species maintained optimal growth rates over a wide range of temperatures, but A. tamarense did not. The cell volumes of each species showed little change over the temperature range. The total fatty acid concentrations in A. sanguinea, A. tamarense and C. ovata decreased as the temperature increased, but P. minimum showed no trend in this respect. Polyunsaturated fatty acids (PUFAs), the key biochemical components that maintain cell membrane fluidity and which are associated with toxicity, decreased in both concentration and proportion of total fatty acids as temperature increased, except in A. sanguinea, in which the proportion of PUFAs to the total fatty acids increased. These reductions in PUFA concentration and proportion could reduce cell membrane fluidity and toxicity in HABs; however, enhanced growth and/or ruptured cells, which are considered more toxic than intact cells, could compensate for the reduced per-cell toxicity. This phenomenon might impact on the marine ecosystem and aquaculture industry.

  2. Biochemical composition of three algal species proposed as food for captive freshwater mussels

    USGS Publications Warehouse

    Gatenby, C.M.; Orcutt, D.M.; Kreeger, D.A.; Parker, B.C.; Jones, V.A.; Neves, R.J.

    2003-01-01

    To identify potential diets for rearing captive freshwater mussels, the protein, carbohydrate (CHO), and lipid contents of two green algae, Neochloris oleoabundans, Bracteacoccus grandis, and one diatom, Phaeodactylum tricornutum, were compared at different growth stages. The fatty acid and sterol composition were also identified. Protein was greatest (55-70%) for all species at late log growth stage (LL), and declined in late stationary (LS) growth. CHO was greatest at LS stage for all species (33.9-56.4% dry wt). No significant change in lipid levels occurred with growth stage, but tended to increase in N. oleoabundans. Mean lipid content differed significantly in the order: N. oleoabundans > P. tricornutum > B. grandis. Total fatty acids (TFA) were higher at LS stage compared to other stages in the two green algae, and stationary stage in the diatom. Mean unsaturated fatty acids (UFA) as %TFA was significantly higher in N. oleoabundans than the other species. The green algae contained high percentages of C-18 polyunsaturated fatty acids (PUFAs), while the diatom was abundant in C-16 saturated and mono-unsaturated fatty acids and C-20 PUFA fatty acids. Growth stage had no effect on sterol concentration of any species. B. grandis showed significantly higher sterol levels than the other species except P. tricornutum at S stage. B. grandis was characterized by predominantly ??5, C-29 sterols, while N. oleoabundans synthesized ??5,7, ??5,7,22, and ??7, C-28 sterols. P. tricornutum produced primarily a ??5,22, C-28 sterol, and a small amount of a ??7,22, C-28 sterol.

  3. Recycling algae to improve species control and harvest efficiency from a high rate algal pond.

    PubMed

    Park, J B K; Craggs, R J; Shilton, A N

    2011-12-15

    This paper investigates the influence of recycling gravity harvested algae on species dominance and harvest efficiency in wastewater treatment High Rate Algal Ponds (HRAP). Two identical pilot-scale HRAPs were operated over one year either with (HRAP(r)) or without (HRAP(c)) harvested algal biomass recycling. Algae were harvested from the HRAP effluent in algal settling cones (ASCs) and harvest efficiency was compared to settlability in Imhoff cones five times a week. A microscopic image analysis technique was developed to determine relative algal dominance based on biovolume and was conducted once a month. Recycling of harvested algal biomass back to the HRAP(r) maintained the dominance of a single readily settleable algal species (Pediastrum sp.) at >90% over one year (compared to the control with only 53%). Increased dominance of Pediastrum sp. greatly improved the efficiency of algal harvest (annual average of >85% harvest for the HRAP(r) compared with ∼60% for the control). Imhoff cone experiments demonstrated that algal settleability was influenced by both the dominance of Pediastrum sp. and the species composition of remaining algae. Algal biomass recycling increased the average size of Pediastrum sp. colonies by 13-30% by increasing mean cell residence time. These results indicate that recycling gravity harvested algae could be a simple and effective operational strategy to maintain the dominance of readily settleable algal species, and enhance algal harvest by gravity sedimentation.

  4. Near- and mid-infrared spectroscopic determination of algal composition

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to investigate the feasibility of using near-infrared reflectance spectroscopy (NIRS) and mid-infrared reflectance spectroscopy (MIRS) to determine the composition of algal samples. We assayed a set of algal biomass samples (n=117), collected from algae turf scrubber...

  5. Yield of trihalomethanes and haloacetic acids upon chlorinating algal cells, and its prediction via algal cellular biochemical composition.

    PubMed

    Hong, Hua Chang; Mazumder, Asit; Wong, Ming Hung; Liang, Yan

    2008-12-01

    The major objective of the present study was to investigate the contribution of major biomolecules, including protein, carbohydrates and lipids, in predicting DBPs formation upon chlorination of algal cells. Three model compounds, including bovine serum albumin (BSA), starch and fish oil, as surrogates of algal-derived proteins, carbohydrates and lipids, and cells of three algae species, representing blue-green algae, green algae, and diatoms, were chlorinated in the laboratory. The results showed that BSA (27 microg mg(-1) C) and fish oil (50 microg mg(-1) C) produced more than nine times higher levels of chloroform than starch (3 microg mg(-1) C). For the formation of HAAs, BSA was shown to have higher reactivity (49 microg mg(-1) C) than fish oil and starch (5 microg mg(-1) C). For the algal cells, Nitzschia sp. (diatom) showed higher chloroform yields (48 microg mg(-1) C) but lower HAA yields (43 microg mg(-1) C) than Chlamydomonas sp. (green algae) (chloroform: 34 microg mg(-1) C; HAA: 62 microg mg(-1) C) and Oscillatoria sp. (blue-green algae) (chloroform: 26 microg mg(-1) C; HAA: 72 microg mg(-1) C). The calculated chloroform formation of cells from the three algal groups, based on their biochemical compositions, was generally consistent with the experimental data, while the predicted values for HAAs were significantly lower than the observed ones. As compared to humic substances, such as humic and fulvic acids, the algal cells appeared to be important precursors of dichloroacetic acid.

  6. Seasonal patterns in stream periphyton fatty acids and community benthic algal composition in six high quality headwater streams

    USGS Publications Warehouse

    Honeyfield, Dale C.; Maloney, Kelly O.

    2015-01-01

    Fatty acids are integral components of periphyton and differ among algal taxa. We examined seasonal patterns in periphyton fatty acids in six minimally disturbed headwater streams in Pennsylvania’s Appalachian Mountains, USA. Environmental data and periphyton were collected across four seasons for fatty acid and algal taxa content. Non-metric multidimensional scaling ordination suggested significant seasonal differences in fatty acids; an ordination on algal composition revealed similar seasonal patterns, but with slightly weaker separation of summer and fall. Summer and fall fatty acid profiles were driven by temperature, overstory cover, and conductivity and winter profiles by measures of stream size. Ordination on algal composition suggested that summer and fall communities were driven by overstory and temperature, whereas winter communities were driven by velocity. The physiologically important fatty acid 18:3ω6 was highest in summer and fall. Winter samples had the highest 20:3ω3. Six saturated fatty acids differed among the seasons. Periphyton fatty acids profiles appeared to reflect benthic algal species composition. This suggests that periphyton fatty acid composition can be useful in characterizing basal food resources and stream water quality.

  7. Algal Species and Light Microenvironment in a Low-pH, Geothermal Microbial Mat Community

    PubMed Central

    Ferris, M. J.; Sheehan, K. B.; Kühl, M.; Cooksey, K.; Wigglesworth-Cooksey, B.; Harvey, R.; Henson, J. M.

    2005-01-01

    Unicellular algae are the predominant microbial mat-forming phototrophs in the extreme environments of acidic geothermal springs. The ecology of these algae is not well known because concepts of species composition are inferred from cultivated isolates and microscopic observations, methods known to provide incomplete and inaccurate assessments of species in situ. We used sequence analysis of 18S rRNA genes PCR amplified from mat samples from different seasons and different temperatures along a thermal gradient to identify algae in an often-studied acidic (pH 2.7) geothermal creek in Yellowstone National Park. Fiber-optic microprobes were used to show that light for algal photosynthesis is attenuated to <1% over the 1-mm surface interval of the mat. Three algal sequences were detected, and each was present year-round. A Cyanidioschyzon merolae sequence was predominant at temperatures of ≥49°C. A Chlorella protothecoides var. acidicola sequence and a Paradoxia multisita-like sequence were predominant at temperatures of ≤39°C. PMID:16269755

  8. Algal species and light microenvironment in a low-pH, geothermal microbial mat community.

    PubMed

    Ferris, M J; Sheehan, K B; Kühl, M; Cooksey, K; Wigglesworth-Cooksey, B; Harvey, R; Henson, J M

    2005-11-01

    Unicellular algae are the predominant microbial mat-forming phototrophs in the extreme environments of acidic geothermal springs. The ecology of these algae is not well known because concepts of species composition are inferred from cultivated isolates and microscopic observations, methods known to provide incomplete and inaccurate assessments of species in situ. We used sequence analysis of 18S rRNA genes PCR amplified from mat samples from different seasons and different temperatures along a thermal gradient to identify algae in an often-studied acidic (pH 2.7) geothermal creek in Yellowstone National Park. Fiber-optic microprobes were used to show that light for algal photosynthesis is attenuated to < 1% over the 1-mm surface interval of the mat. Three algal sequences were detected, and each was present year-round. A Cyanidioschyzon merolae sequence was predominant at temperatures of > or = 49 degrees C. A Chlorella protothecoides var. acidicola sequence and a Paradoxia multisita-like sequence were predominant at temperatures of < or = 39 degrees C.

  9. Strain, biochemistry, and cultivation-dependent measurement variability of algal biomass composition.

    PubMed

    Laurens, Lieve M L; Van Wychen, Stefanie; McAllister, Jordan P; Arrowsmith, Sarah; Dempster, Thomas A; McGowen, John; Pienkos, Philip T

    2014-05-01

    Accurate compositional analysis in biofuel feedstocks is imperative; the yields of individual components can define the economics of an entire process. In the nascent industry of algal biofuels and bioproducts, analytical methods that have been deemed acceptable for decades are suddenly critical for commercialization. We tackled the question of how the strain and biochemical makeup of algal cells affect chemical measurements. We selected a set of six procedures (two each for lipids, protein, and carbohydrates): three rapid fingerprinting methods and three advanced chromatography-based methods. All methods were used to measure the composition of 100 samples from three strains: Scenedesmus sp., Chlorella sp., and Nannochloropsis sp. The data presented point not only to species-specific discrepancies but also to cell biochemistry-related discrepancies. There are cases where two respective methods agree but the differences are often significant with over- or underestimation of up to 90%, likely due to chemical interferences with the rapid spectrophotometric measurements. We provide background on the chemistry of interfering reactions for the fingerprinting methods and conclude that for accurate compositional analysis of algae and process and mass balance closure, emphasis should be placed on unambiguous characterization using methods where individual components are measured independently.

  10. Mass cultivation of various algal species and their evaluation as a potential candidate for lipid production.

    PubMed

    Sharif, Nadia; Munir, Neelma; Saleem, Faiza; Aslam, Farheen; Naz, Shagufta

    2015-01-01

    Microalgae have been proposed as a promising source for biodiesel production. Focusing on algal strains for biodiesel production, efforts should be made to search new strains. Experiments were carried out to investigate the effects of growth parameters (nutrients, pH, light, aeration and temperature) and the oil percentage of eight algal strains (Chlorella sp., Cladophora sp., Hydrodictylium sp., Oedogonium sp., Oscillatoria sp., Spirogyra sp., Stigeocolonium sp., Ulothrix sp.). Results show that 6.5-7.5 is the optimum pH for the growth of all algal species. Temperature showed a greater variation (25°40°C). Ulothrix sp. gave more biomass productivity and is the most suitable strain for biodiesel production due to higher oil percentage (62%). Least biomass production was observed for Stigeocolonium sp. and least oil content was obtained from Hydrodictylium sp. It was observed that among these eight algal strains for biodiesel production, Ulothrix and Chlorella are the most promising algae species.

  11. Chemical composition influence of cement based mortars on algal biofouling

    NASA Astrophysics Data System (ADS)

    Estelle, Dalod; Alexandre, Govin; Philippe, Grosseau; Christine, Lors; René, Guyonnet; Denis, Damidot

    2013-04-01

    The main cause of building-facade biodegradation is the growth of microorganisms. This phenomenon depends on several parameters such as the geographical situation, the environmental conditions and the surface state of the substrate. Several researches have been devoted to the study of the effect of porosity and roughness on the biofouling of stones and mortars. However, none of them have addressed the influence of the mortar chemistry on the microorganism growth kinetic. The main objective of this study is to highlight the influence of the mortar chemistry in relationship with its physical properties on biological weathering. Earlier work showed a good resistance of Calcium Aluminate Cements to biodeterioration by acidogenic bacteria (Thiobacillus) and fungi (Alternaria alternata, Aspergillus Niger and Coniosporium uncinatum). In order to characterize the influence of the mortar chemistry on biofouling, two Portland cements and two alumina cements are used. Among micro-organisms able to grow, green algae are most involved in the aesthetic deterioration of facades. Indeed, they can colonize any type of media and can be a source of nutrients for other micro-organisms such as fungi. The green algae Klebsormidium flaccidum is chosen because of its representativeness. It is indeed the species the most frequently identified and isolated from samples taken on sites. The biofouling kinetic is followed on samples exposed outdoor and on samples tested in a laboratory bench which consists in spraying an algae culture on mortar specimens. The results obtained by in situ trials are compared with the results obtained on the laboratory bench. The microorganism growth kinetic is measured by image analysis. To improve the detection of algae on the surface of the cementitious samples, the raw image is converted in the YIQ color space. Y, I and Q correspond respectively to luminance, in-phase, and quadrature. On the Q channel, the areas covered by algae and the areas of clean mortar

  12. Comparing new and conventional methods to estimate benthic algal biomass and composition in freshwaters.

    PubMed

    Kahlert, Maria; McKie, Brendan G

    2014-11-01

    We compared conventional microscope-based methods for quantifying biomass and community composition of stream benthic algae with output obtained for these parameters from a new instrument (the BenthoTorch), which measures fluorescence of algal pigments in situ. Benthic algae were studied in 24 subarctic oligotrophic (1.7-26.9, median 7.2 μg total phosphorus L(-1)) streams in Northern Sweden. Readings for biomass of the total algal mat, quantified as chlorophyll a, did not differ significantly between the BenthoTorch (median 0.52 μg chlorophyll a cm(-2)) and the conventional method (median 0.53 μg chlorophyll a cm(-2)). However, quantification of community composition of the benthic algal mat obtained using the BenthoTorch did not match those obtained from conventional methods. The BenthoTorch indicated a dominance of diatoms, whereas microscope observations showed a fairly even distribution between diatoms, blue-green algae (mostly nitrogen-fixing) and green algae (mostly large filamentous), and also detected substantial biovolumes of red algae in some streams. These results most likely reflect differences in the exact parameters quantified by the two methods, as the BenthoTorch does not account for variability in cell size and the presence of non-chlorophyll bearing biomass in estimating the proportion of different algal groups, and does not distinguish red algal chlorophyll from that of other algal groups. Our findings suggest that the BenthoTorch has utility in quantifying biomass expressed as μg chlorophyll a cm(-2), but its output for the relative contribution of different algal groups to benthic algal biomass should be used with caution.

  13. Occurrence of Harmful Algal Species and Shellfish Toxicity in Sardinia (Italy)

    PubMed Central

    Bazzoni, Anna Maria; Mudadu, Alessandro Graziano; Lorenzoni, Giuseppa; Arras, Igor; Lugliè, Antonella; Vivaldi, Barbara; Cicotelli, Valentina; Sanna, Giovanna; Tedde, Giuseppe; Ledda, Salvatore; Alesso, Enrico; Marongiu, Edoardo; Virgilio, Sebastiano

    2016-01-01

    Sardinia (Italy, north-western Mediterranean) is a commercially important producer of edible bivalve molluscs. Since the early 2000s, it was subjected to recurring cases of mussel farm closures due to toxic algal poison. Here, we present the studies on toxin concentrations and the associated potentially toxic phytoplankton distribution and abundances carried out by a regular monitoring programme in Sardinian shellfish areas, from January to May 2015. Diarrheic shellfish poisoning (DSP) toxins were detected in several bivalve molluscs samples, while paralytic shellfish poisoning (PSP) and paralytic shellfish poisoning toxins were present just once, without exceeding the legal limits. Potentially toxic algal species have been constantly present. Pseudo-nitzschia species were present during the entire study often with high abundances, while Dinophysis species reached high densities sporadically. Among PSP phytoplankton, only Alexandrium minutum Halim was found. The data obtained in this study showed an increase in the DSP toxicity in mussels in Sardinia. No clear relation between the occurrence of toxins in shellfish and the presence of potentially toxic algal species was found, although a slight correlation between DSP toxins and Dinophysis species could be supported. PMID:28058244

  14. HPLC pigment profiles of 31 harmful algal bloom species isolated from the coastal sea areas of China

    NASA Astrophysics Data System (ADS)

    Liu, Shuxia; Yao, Peng; Yu, Zhigang; Li, Dong; Deng, Chunmei; Zhen, Yu

    2014-12-01

    Chemotaxonomy based on diagnostic pigments is now a routine tool for macroscopic determination of the composition and abundance of phytoplankton in various aquatic environments. Since the taxonomic capability of this method depends on the relationships between diagnostic pigments and chlorophyll a of classified groups, it is critical to calibrate it by using pigment relationships obtained from representative and/or dominant species local to targeted investigation area. In this study, pigment profiles of 31 harmful algal bloom (HAB) species isolated from the coastal sea areas of China were analyzed with high performance liquid chromatography (HPLC). Pigment compositions, cellular pigment densities and ratios of pigments to chlorophyll a were determined and calculated. Among all these species, 25 kinds of pigments were detected, of which fucoxanthin, peridinin, 19'-butanoyloxyfucoxanthin, 19'-hexanoyloxyfucoxanthin, violaxanthin, and antheraxanthin were diagnostic pigments. Cellular pigment density was basically independent of species and environmental conditions, and therefore was recommended as a bridge to compare the results of HPLC-CHEMTAX technique with the traditional microscopy method. Pigment ratios of algal species isolated from the coast of China, especially the diagnostic pigment ratios, were higher than those from other locations. According to these results, pigment ratio ranges of four classes of phytoplankton common off the coast of China were summarized for using in the current chemotaxonomic method. Moreover, the differences of pigments ratios among different species under the same culturing conditions were consistent with their biological differences. Such differences have the potential to be used to classify the phytoplankton below class, which is meaningful for monitoring HABs by HPLC-CHEMTAX.

  15. Most harmful algal bloom species are vitamin B1 and B12 auxotrophs.

    PubMed

    Tang, Ying Zhong; Koch, Florian; Gobler, Christopher J

    2010-11-30

    Eutrophication can play a central role in promoting harmful algal blooms (HABs), and therefore many HAB studies to date have focused on macronutrients (N, P, Si). Although a majority of algal species require exogenous B vitamins (i.e., auxotrophic for B vitamins), the possible importance of organic micronutrients such as B vitamins (B(1), B(7), B(12)) in regulating HABs has rarely been considered. Prior investigations of vitamins and algae have examined a relatively small number of dinoflagellates (n = 26) and a paucity of HAB species (n = 4). In the present study, the vitamin B(1), B(7), and B(12) requirements of 41 strains of 27 HAB species (19 dinoflagellates) were investigated. All but one species (two strains) of harmful algae surveyed required vitamin B(12), 20 of 27 species required B(1), and 10 of 27 species required B(7), all proportions higher than the previously reported for non-HAB species. Half-saturation (K(s)) constants of several HAB species for B(1) and B(12) were higher than those previously reported for other phytoplankton and similar to vitamin concentrations reported in estuaries. Cellular quotas for vitamins suggest that, in some cases, HAB demands for vitamins may exhaust standing stocks of vitamins in hours to days. The sum of these findings demonstrates the potentially significant ecological role of B-vitamins in regulating the dynamics of HABs.

  16. Differential response to green algal species to solvents

    SciTech Connect

    Tadros, M.G.; Philips, J.; Patel, H.; Pandiripally, V. )

    1994-03-01

    Unicellular algae in aquatic ecosystems are subjected to a variety of pollutants from sources such as runoff from agricultural lands and industrial outfalls. Organic solvents are natural components of oil deposits and commonly find their way into surface waters as a result discharges from refineries, waste oil, disposal, and accidental spills. Organic solvents can make their way into the environment as industrial wastes. Because of their carcinogenic potential, contamination of soil and water by solvents is cause for serious concern. Relatively few reports have been published on the comparative toxicity of solvents toward test organisms, and these dealt primarily with fish and aquatic invertebrates. However, limited data of toxicity effects of solvents on algae have been published. Algae have been considered to be good indicators of bioactivity of industrial wastes. Unicellular algae vary in their response to a variety of toxicants. Little is known, however, about toxicity of solvents to freshwater unicellular green algae. The work reported here was done to examine the effect of selected solvents on unicellular green algae species to determine whether they differed in their responses to these chemicals. 14 refs., 1 fig.

  17. Impacts of zooplankton composition and algal enrichment on the accumulation of mercury in an experimental freshwater food web.

    PubMed

    Pickhardt, Paul C; Folt, Carol L; Chen, Celia Y; Klaue, Bjoern; Blum, Joel D

    2005-03-01

    There is a well documented accumulation of mercury in fish to concentrations of concern for human consumption. Variation in fish Hg burden between lakes is often high and may result from differences in Hg transfer through lower levels of the food web where mercury is bioconcentrated to phytoplankton and transferred to herbivorous zooplankton. Prior research derived patterns of mercury accumulation in freshwater invertebrates from field collected animals. This study provides results from controlled mesocosm experiments comparing the effects of zooplankton composition, algal abundance, and the chemical speciation of mercury on the ability of zooplankton to accumulate mercury from phytoplankton and transfer that mercury to planktivores. Experiments were conducted in 550-L mesocosms across a gradient of algal densities manipulated by inorganic nutrient additions. Enriched, stable isotopes of organic (CH3(200HgCl)) and inorganic (201HgCl2) mercury were added to mesocosms and their concentrations measured in water, seston, and three common zooplankton species. After 2 weeks, monomethylmercury (MMHg) concentrations were two to three times lower in the two copepod species, Leptodiaptomus minutus and Mesocyclops edax than in the cladoceran, Daphnia mendotae. All three zooplankton species had higher MMHg concentrations in mesocosms with low versus high initial algal abundance. However, despite higher concentrations of inorganic mercury (HgI) in seston from low nutrient mesocosms, there were no significant differences in the HgI accumulated by zooplankton across nutrient treatments. Bioaccumulation factors for MMHg in the plankton were similar to those calculated for plankton in natural lakes and a four-compartment (aqueous, seston, macrozooplankton, and periphyton/sediments) mass balance model after 21 days accounted for approximately 18% of the CH3(200Hg) and approximately 33% of the 201Hg added. Results from our experiments corroborate results from field studies and

  18. Preliminary evaluation of an in vivo fluorometer to quantify algal periphyton biomass and community composition

    USGS Publications Warehouse

    Harris, Theodore D.; Graham, Jennifer

    2015-01-01

    The bbe-Moldaenke BenthoTorch (BT) is an in vivo fluorometer designed to quantify algal biomass and community composition in benthic environments. The BT quantifies total algal biomass via chlorophyll a (Chl-a) concentration and may differentiate among cyanobacteria, green algae, and diatoms based on pigment fluorescence. To evaluate how BT measurements of periphytic algal biomass (as Chl-a) compared with an ethanol extraction laboratory analysis, we collected BT- and laboratory-measured Chl-a data from 6 stream sites in the Indian Creek basin, Johnson County, Kansas, during August and September 2012. BT-measured Chl-a concentrations were positively related to laboratory-measured concentrations (R2 = 0.47); sites with abundant filamentous algae had weaker relations (R2 = 0.27). Additionally, on a single sample date, we used the BT to determine periphyton biomass and community composition upstream and downstream from 2 wastewater treatment facilities (WWTF) that discharge into Indian Creek. We found that algal biomass increased immediately downstream from the WWTF discharge then slowly decreased as distance from the WWTF increased. Changes in periphyton community structure also occurred; however, there were discrepancies between BT- and laboratory-measured community composition data. Most notably, cyanobacteria were present at all sites based on BT measurements but were present at only one site based on laboratory-analyzed samples. Overall, we found that the BT compared reasonably well with laboratory methods for relative patterns in Chl-a but not as well with absolute Chl-aconcentrations. Future studies need to test the BT over a wider range of Chl-aconcentrations, in colored waters, and across various periphyton assemblages.

  19. Bioaccumulation of heavy metals by freshwater algal species of Bhavnagar, Gujarat, India.

    PubMed

    Jaiswar, Santial; Kazi, Mudassar Anisoddin; Mehta, Shailesh

    2015-11-01

    The present study investigated copper, cadmium, lead and zinc accumulation in algal species Oedogonium, Cladophora, Oscillatoria and Spirogyra from freshwater habitats of Bhavnagar, India. Eight different locations were periodically sampled during August 2009 to March 2011. The general trend of heavy metal concentrations in all the algal species in present study (except at few stations), were found to be in the following order: Zn > Cu > Pb > Cd. Highest accumulation of Cu was recorded in Oedogonium, while Cladophora showed highest accumulation of Pb signifying a good bioaccumulator. Oscillatoria and Oedogonium were highest Zn accumulating algae which showed significant difference between the means at P < 0.05. ANOVA was performed for comparing significance mean between the groups and within the group for heavy metals in water. The concentration of heavy metals in water was in the following order: Zn > Cu > Pb > Cd. The present study showed that Oedogonium, Cladophora, Oscillatoria and Spirogyra were excellent bioaccumulator and could be utilized as biomonitoring agents in water bodies receiving waste contaminated by metals.

  20. Oxygen Metabolic Responses of Three Species of Large Benthic Foraminifers with Algal Symbionts to Temperature Stress

    PubMed Central

    Fujita, Kazuhiko; Okai, Takaaki; Hosono, Takashi

    2014-01-01

    Water temperature affects the physiology of large benthic foraminifers (LBFs) with algal symbionts dwelling in coral reef environments. However, the detailed physiological responses of LBF holobionts to temperature ranges occurring in their habitats are not known. We report net oxygen (O2) production and respiration rates of three LBF holobionts (Baculogypsina sphaerulata and Calcarina gaudichaudii hosting diatom symbionts, and Amphisorus kudakajimensis hosting dinoflagellate symbionts) measured in the laboratory at water temperatures ranging from 5°C to 45°C in 2.5°C or 5°C intervals and with light saturation levels of ∼500 µmol m−2 s−1. In addition, the recovery of net O2 production and respiration rates after exposure to temperature stress was assessed. The net O2 production and respiration rates of the three LBF holobionts peaked at ∼30°C, indicating their optimal temperature for a short exposure period. At extreme high temperatures (≥40°C), the net O2 production rates of all three LBF holobionts declined to less than zero and the respiration rates slightly decreased, indicating that photosynthesis of algal symbionts was inactivated. At extreme low temperatures (≤10°C for two calcarinid species and ≤5°C for A. kudakajimensis), the net O2 production and respiration rates were near zero, indicating a weakening of holobiont activity. After exposure to extreme high or low temperature, the net O2 production rates did not recover until the following day, whereas the respiration rates recovered rapidly, suggesting that a longer time (days) is required for recovery from damage to the photosystem by temperature stress compared to the respiration system. These results indicate that the oxygen metabolism of LBF holobionts can generally cope well with conditions that fluctuate diurnally and seasonally in their habitats. However, temporal heat and cold stresses with high light levels may induce severe damage to algal symbionts and also damage to host

  1. Oxygen metabolic responses of three species of large benthic foraminifers with algal symbionts to temperature stress.

    PubMed

    Fujita, Kazuhiko; Okai, Takaaki; Hosono, Takashi

    2014-01-01

    Water temperature affects the physiology of large benthic foraminifers (LBFs) with algal symbionts dwelling in coral reef environments. However, the detailed physiological responses of LBF holobionts to temperature ranges occurring in their habitats are not known. We report net oxygen (O2) production and respiration rates of three LBF holobionts (Baculogypsina sphaerulata and Calcarina gaudichaudii hosting diatom symbionts, and Amphisorus kudakajimensis hosting dinoflagellate symbionts) measured in the laboratory at water temperatures ranging from 5°C to 45°C in 2.5°C or 5°C intervals and with light saturation levels of ∼500 µmol m(-2) s(-1). In addition, the recovery of net O2 production and respiration rates after exposure to temperature stress was assessed. The net O2 production and respiration rates of the three LBF holobionts peaked at ∼30°C, indicating their optimal temperature for a short exposure period. At extreme high temperatures (≥40°C), the net O2 production rates of all three LBF holobionts declined to less than zero and the respiration rates slightly decreased, indicating that photosynthesis of algal symbionts was inactivated. At extreme low temperatures (≤10°C for two calcarinid species and ≤5°C for A. kudakajimensis), the net O2 production and respiration rates were near zero, indicating a weakening of holobiont activity. After exposure to extreme high or low temperature, the net O2 production rates did not recover until the following day, whereas the respiration rates recovered rapidly, suggesting that a longer time (days) is required for recovery from damage to the photosystem by temperature stress compared to the respiration system. These results indicate that the oxygen metabolism of LBF holobionts can generally cope well with conditions that fluctuate diurnally and seasonally in their habitats. However, temporal heat and cold stresses with high light levels may induce severe damage to algal symbionts and also damage to host

  2. Removal of Algal Blooms in Freshwater by Meso-porous Composite Coagulant

    NASA Astrophysics Data System (ADS)

    Liu, Dan; Li, Fengting; Hui, Franck; Lédion, Jean

    2010-11-01

    Based on the concept of "using waste to treat waste and changing waste into valuables", this paper put forward a new meso-porous composite coagulant with good performance and low cost, and the removal effects of meso-porous composite coagulant on algae cells and toxins, dissolved organics in water was studied, the object of this research was to provide a new and effective way for emergency needs to clear up harmful algal blooms in freshwater. The results showed that meso-porous composite coagulant at optimal loadings (1g/L) could remove over 99% algal cells; meanwhile, the removal efficiency of COD, microcystin, total nitrogen and phosphorus was found to be 87.5%, 97.7%, 41.5% and 77.8% respectively, moreover, the forming speed of floccules was fast, and the dense floccules had good settling performance. Furthermore, the mechanism of algae removal was explored preliminarily by meso-porous composite coagulant which played a dual role in adsorption and flocculation.

  3. Preparation and Characterization of Algal Polysaccharides/Magnetite Microparticles Composite Films

    NASA Astrophysics Data System (ADS)

    Diaz-Bleis, D.; Freile-Pelegrín, Y.; Vales-Pinzón, C.; Martínez-Torres, P.; Alvarado-Gil, J. J.

    2012-11-01

    Composites of magnetic particles in a polymeric matrix have received increasing interest due to their capacity to respond to external magnetic or electromagnetic fields. Algal polysaccharides such as agar are used extensively as gel-forming agents, thickeners, and stabilizers due to their low cost and high degree of biocompatibility and biodegradability. This study is focused on the preparation and characterization of algal polysaccharides-carbonyl iron composite films. The samples were analyzed using the photothermal radiometry (PTR) technique in the back-propagation emission configuration performing a modulation frequency scan. The amplitude and phase of the PTR experimental data were fitted simultaneously using a one-layer thermal-wave model considering homogeneous optical and thermal properties. The results indicate a systematic increase of the thermal diffusivity and optical absorption coefficient when the magnetic particle content increases. Scanning electron microscopy surface morphology of the agar/carbonyl iron composite indicates that a homogeneous distribution of particles can be obtained with the reported procedure and also provides evidence of agglomeration at high concentrations.

  4. Delineation of six species of the primitive algal genus Glaucocystis based on in situ ultrastructural characteristics

    PubMed Central

    Takahashi, Toshiyuki; Nishida, Tomoki; Tuji, Akihiro; Saito, Chieko; Matsuzaki, Ryo; Sato, Mayuko; Toyooka, Kiminori; Yasuda, Hidehiro; Nozaki, Hisayoshi

    2016-01-01

    The field of microbiology was established in the 17th century upon the discovery of microorganisms by Antonie van Leeuwenhoek using a single-lens microscope. Now, the detailed ultrastructures of microorganisms can be elucidated in situ using three-dimensional electron microscopy. Since the availability of electron microscopy, the taxonomy of microscopic organisms has entered a new era. Here, we established a new taxonomic system of the primitive algal genus Glaucocystis (Glaucophyta) using a new-generation electron microscopic methodology: ultra-high-voltage electron microscopy (UHVEM) and field-emission scanning electron microscopy (FE-SEM). Various globally distributed Glaucocystis strains were delineated into six species, based on differences in in situ ultrastructural features of the protoplast periphery under UHVEM tomography and in the mother cell wall by FE-SEM, as well as differences in the light microscopic characteristics and molecular phylogenetic results. The present work on Glaucocystis provides a model case of new-generation taxonomy. PMID:27383831

  5. Isolation and identification of bacteria associated with the surfaces of several algal species

    NASA Astrophysics Data System (ADS)

    Wang, Zifeng; Xiao, Tian; Pang, Shaojun; Liu, Min; Yue, Haidong

    2009-09-01

    We conducted this study to assess the diversity of bacteria associated with the surfaces of algae based on 16S rDNA sequence analyses. Twelve strains of bacteria were obtained from the surfaces of the following four species of algae: Gracilaria textorii, Ulva pertusa, Laminaria japonica, and Polysiphonia urceolata. The isolated strains of bacteria can be divided into two groups: Halomonas and Vibrio, in physiology, biochemical characteristics and 16S rDNA sequence analyses. The phylogenetic tree constructed based on 16S rDNA sequences of the isolates shows four obvious clusters, Halomonas venusta, Vibrio tasmaniensis, Vibrio lentus, and Vibrio splendidus. Isolates from the surface of P. urceolata are more abundant and diverse, of which strains P9 and P28 have a 16S rDNA sequence very similar (97.5%-99.8%) to that of V. splendidus. On the contrary, the isolates from the surfaces of G. textorii, U. pertusa and L. japonica are quite simple and distribute on different branches of the phylogenetic tree. In overall, the results of this study indicate that the genetic relationships among the isolates are quite close and display a certain level of host species specificity, and alga-associated bacteria species are algal species specific.

  6. Species identification of mixed algal bloom in the Northern Arabian Sea using remote sensing techniques.

    PubMed

    Dwivedi, R; Rafeeq, M; Smitha, B R; Padmakumar, K B; Thomas, Lathika Cicily; Sanjeevan, V N; Prakash, Prince; Raman, Mini

    2015-02-01

    Oceanic waters of the Northern Arabian Sea experience massive algal blooms during winter-spring (mid Feb-end Mar), which prevail for at least for 3 months covering the entire northern half of the basin from east to west. Ship cruises were conducted during winter-spring of 2001-2012 covering different stages of the bloom to study the biogeochemistry of the region. Phytoplankton analysis indicated the presence of green tides of dinoflagellate, Noctiluca scintillans (=N. miliaris), in the oceanic waters. Our observations indicated that diatoms are coupled and often co-exist with N. scintillans, making it a mixed-species ecosystem. In this paper, we describe an approach for detection of bloom-forming algae N. scintillans and its discrimination from diatoms using Moderate Resolution Imaging Spectroradiometer (MODIS)-Aqua data in a mixed-species environment. In situ remote sensing reflectance spectra were generated using Satlantic™ hyperspectral radiometer for the bloom and non-bloom waters. Spectral shapes of the reflectance spectra for different water types were distinct, and the same were used for species identification. Scatter of points representing different phytoplankton classes on a derivative plot revealed four diverse clusters, viz. N. scintillans, diatoms, non-bloom oceanic, and non-bloom coastal waters. The criteria developed for species discrimination were implemented on MODIS data and validated using inputs from a recent ship cruise conducted in March 2013.

  7. Algal and fungal diversity in Antarctic lichens.

    PubMed

    Park, Chae Haeng; Kim, Kyung Mo; Elvebakk, Arve; Kim, Ok-Sun; Jeong, Gajin; Hong, Soon Gyu

    2015-01-01

    The composition of lichen ecosystems except mycobiont and photobiont has not been evaluated intensively. In addition, recent studies to identify algal genotypes have raised questions about the specific relationship between mycobiont and photobiont. In the current study, we analyzed algal and fungal community structures in lichen species from King George Island, Antarctica, by pyrosequencing of eukaryotic large subunit (LSU) and algal internal transcribed spacer (ITS) domains of the nuclear rRNA gene. The sequencing results of LSU and ITS regions indicated that each lichen thallus contained diverse algal species. The major algal operational taxonomic unit (OTU) defined at a 99% similarity cutoff of LSU sequences accounted for 78.7-100% of the total algal community in each sample. In several cases, the major OTUs defined by LSU sequences were represented by two closely related OTUs defined by 98% sequence similarity of ITS domain. The results of LSU sequences indicated that lichen-associated fungi belonged to the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Leotiomycetes, and Sordariomycetes of the Ascomycota, and Tremellomycetes and Cystobasidiomycetes of the Basidiomycota. The composition of major photobiont species and lichen-associated fungal community were mostly related to the mycobiont species. The contribution of growth forms or substrates on composition of photobiont and lichen-associated fungi was not evident.

  8. The impact of atmospheric deposition of cadmium on dominant algal species in the East China Sea

    NASA Astrophysics Data System (ADS)

    Quan, Qiwei; Chen, Ying; Ma, Qingwei; Wang, Fujiang; Meng, Xi; Wang, Bo

    2016-04-01

    Cadmium (Cd) mainly derived from anthropogenic emissions can be transported through atmospheric pathway to marine ecosystem, affecting the phytoplankton community and primary productivity. In this study, we identified the toxicity threshold of Cd for phytoplankton under seawater conditions of the coastal East China Sea (ECS) through both laboratory and in situ mesocosm incubation experiments. The mesocosm experiment showed that Cd in low concentration (0.003 μg per μg chl a) was conducive to the growth of natural community and increased chl a productivity. In high concentration (0.03 μg per μg chl a) Cd acted as an inhibiting factor which decreased the total chl a productivity. The diatom community was found to be more sensitive to Cd toxicity than dinoflagellate, as the low concentration Cd showed toxicity to diatom but enhanced dinoflagellate growth. We noticed that the soluble Cd estimated from atmosphere deposition to the coastal ECS was below the toxicity threshold and the Cd deposition might promote phytoplankton growth in this region. In our laboratory experiments, adding Cd, similar to aerosol deposition, stimulated the growth of both dominant algal species Prorocentrum donghaiense Lu (dinoflagellate) and Skeletonema costatum (diatom). Adding Cd on a higher level inhibited the growth of both the species, but Skeletonema costatum seemed obviously more sensitive to toxicity. This indicates the potential impact of atmospheric deposition Cd on phytoplankton community succession in the ECS.

  9. Molecular detection and species identification of Alexandrium (Dinophyceae) causing harmful algal blooms along the Chilean coastline

    PubMed Central

    Jedlicki, Ana; Fernández, Gonzalo; Astorga, Marcela; Oyarzún, Pablo; Toro, Jorge E.; Navarro, Jorge M.; Martínez, Víctor

    2012-01-01

    Background and aims On the basis of morphological evidence, the species involved in South American Pacific coast harmful algal blooms (HABs) has been traditionally recognized as Alexandrium catenella (Dinophyceae). However, these observations have not been confirmed using evidence based on genomic sequence variability. Our principal objective was to accurately determine the species of Alexandrium involved in local HABs in order to implement a real-time polymerase chain reaction (PCR) assay for its rapid and easy detection on filter-feeding shellfish, such as mussels. Methodology For species-specific determination, the intergenic spacer 1 (ITS1), 5.8S subunit, ITS2 and the hypervariable genomic regions D1–D5 of the large ribosomal subunit of local strains were sequenced and compared with two data sets of other Alexandrium sequences. Species-specific primers were used to amplify signature sequences within the genomic DNA of the studied species by conventional and real-time PCR. Principal results Phylogenetic analysis determined that the Chilean strain falls into Group I of the tamarensis complex. Our results support the allocation of the Chilean Alexandrium species as a toxic Alexandrium tamarense rather than A. catenella, as currently defined. Once local species were determined to belong to Group I of the tamarensis complex, a highly sensitive and accurate real-time PCR procedure was developed to detect dinoflagellate presence in Mytilus spp. (Bivalvia) samples after being fed (challenged) in vitro with the Chilean Alexandrium strain. The results show that real-time PCR is useful to detect Alexandrium intake in filter-feeding molluscs. Conclusions It has been shown that the classification of local Alexandrium using morphological evidence is not very accurate. Molecular methods enabled the HAB dinoflagellate species of the Chilean coast to be assigned as A. tamarense rather than A. catenella. Real-time PCR analysis based on A. tamarense primers allowed the

  10. Measurement and feature analysis of absorption spectra of four algal species

    NASA Astrophysics Data System (ADS)

    Zhu, Jianhua; Zhou, Hongli; Han, Bing; Li, Tongji

    2016-04-01

    Two methods for particulate pigments (i.e., quantitative filter technique, QFT, and in vivo measurement, InVivo, respectively) and two methods for dissolved pigments (i.e., Acetone Extracts, AceEx, and high-performance liquid chromatography, HPLC, respectively) were used to obtain the optical absorption coefficient spectra for cultures of four typical algal species. Through normalization and analysis of the spectra, it is shown that (1) the four methods are able to measure optical absorption spectra of particulate and/or dissolved pigments; (2) that the optical absorption spectra of particulate and dissolved pigments were consistent in terms of the peak position in the blue wavelength, and the difference of the peak position in the near infrared wavelength was ~10 nm between each other; and (3) that the leveling effect of the absorption spectra of particulate pigments was significant. These four methods can all effectively measure the absorption coefficients of phytoplankton pigments, while each one has its unique advantages in different applications. Therefore, appropriate method should be carefully selected for various application due to their intrinsic difference.

  11. Measurement and feature analysis of absorption spectra of four algal species

    NASA Astrophysics Data System (ADS)

    Zhu, Jianhua; Zhou, Hongli; Han, Bing; Li, Tongji

    2017-03-01

    Two methods for particulate pigments (i.e., quantitative filter technique, QFT, and in vivo measurement, InVivo, respectively) and two methods for dissolved pigments (i.e., Acetone Extracts, AceEx, and high-performance liquid chromatography, HPLC, respectively) were used to obtain the optical absorption coefficient spectra for cultures of four typical algal species. Through normalization and analysis of the spectra, it is shown that (1) the four methods are able to measure optical absorption spectra of particulate and/or dissolved pigments; (2) that the optical absorption spectra of particulate and dissolved pigments were consistent in terms of the peak position in the blue wavelength, and the difference of the peak position in the near infrared wavelength was 10 nm between each other; and (3) that the leveling effect of the absorption spectra of particulate pigments was significant. These four methods can all effectively measure the absorption coefficients of phytoplankton pigments, while each one has its unique advantages in different applications. Therefore, appropriate method should be carefully selected for various application due to their intrinsic difference.

  12. Biosorption of copper by marine algae Gelidium and algal composite material in a packed bed column.

    PubMed

    Vilar, Vítor J P; Botelho, Cidália M S; Loureiro, José M; Boaventura, Rui A R

    2008-09-01

    Marine algae Gelidium and algal composite material were investigated for the continuous removal of Cu(II) from aqueous solution in a packed bed column. The biosorption behaviour was studied during one sorption-desorption cycle of Cu(II) in the flow through column fed with 50 and 25 mg l(-1) of Cu(II) in aqueous solution, at pH 5.3, leading to a maximum uptake capacity of approximately 13 and 3 mg g(-1), respectively, for algae Gelidium and composite material. The breakthrough time decreases as the inlet copper concentration increases, for the same flow rate. The pH of the effluent decreases over the breakthrough time of copper ions, which indicates that ion exchange is one of the mechanisms involved in the biosorption process. Temperature has little influence on the metal uptake capacity and the increase of the ionic strength reduces the sorption capacity, decreasing the breakthrough time. Desorption using 0.1M HNO(3) solution was 100% effective. After two consecutive sorption-desorption cycles no changes in the uptake capacity of the composite material were observed. A mass transfer model including film and intraparticle resistances, and the equilibrium relationship, for adsorption and desorption, was successfully applied for the simulation of the biosorption column performance.

  13. Emergence of Algal Blooms: The Effects of Short-Term Variability in Water Quality on Phytoplankton Abundance, Diversity, and Community Composition in a Tidal Estuary

    PubMed Central

    Egerton, Todd A.; Morse, Ryan E.; Marshall, Harold G.; Mulholland, Margaret R.

    2014-01-01

    Algal blooms are dynamic phenomena, often attributed to environmental parameters that vary on short timescales (e.g., hours to days). Phytoplankton monitoring programs are largely designed to examine long-term trends and interannual variability. In order to better understand and evaluate the relationships between water quality variables and the genesis of algal blooms, daily samples were collected over a 34 day period in the eutrophic Lafayette River, a tidal tributary within Chesapeake Bay’s estuarine complex, during spring 2006. During this period two distinct algal blooms occurred; the first was a cryptomonad bloom and this was followed by a bloom of the mixotrophic dinoflagellate, Gymnodinium instriatum. Chlorophyll a, nutrient concentrations, and physical and chemical parameters were measured daily along with phytoplankton abundance and community composition. While 65 phytoplankton species from eight major taxonomic groups were identified in samples and total micro- and nano-phytoplankton cell densities ranged from 5.8 × 106 to 7.8 × 107 cells L−1, during blooms, cryptomonads and G. instriatum were 91.6% and 99.0%, respectively, of the total phytoplankton biomass during blooms. The cryptomonad bloom developed following a period of rainfall and concomitant increases in inorganic nitrogen concentrations. Nitrate, nitrite and ammonium concentrations 0 to 5 days prior were positively lag-correlated with cryptomonad abundance. In contrast, the G. insriatum bloom developed during periods of low dissolved nitrogen concentrations and their abundance was negatively correlated with inorganic nitrogen concentrations. PMID:27694775

  14. Clostridium algifaecis sp. nov., an anaerobic bacterial species from decomposing algal scum.

    PubMed

    Wu, Yu-Fan; Zheng, Hui; Wu, Qing-Long; Yang, Hong; Liu, Shuang-Jiang

    2014-11-01

    Two anaerobic bacterial strains, MB9-7(T) and MB9-9, were isolated from decomposing algal scum and were characterized using a polyphasic approach. Phylogenetic analysis of 16S rRNA gene sequences showed that strains MB9-7(T) and MB9-9 are closely related to each other (99.7% similarity) and they are also closely related to Clostridium tyrobutyricum (96.5%). The two strains were Gram-stain positive and rod-shaped. Growth occurred at 20-45 °C, at pH 4.0-8.0 and at NaCl concentrations of up to 2% (w/v). Acid was produced from glucose, xylose and mannose. Products of fermentation in PYG medium were mainly butyrate, acetate, carbon dioxide and hydrogen. The predominant cellular fatty acids were C(14:0) and C(16:0). The cellular polar lipids comprised phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, two glycolipids, one phospholipid, one aminophospholipid and two aminolipids. The DNA G+C contents of strain MB9-7(T) and MB9-9 were 27.9 and 28.7 mol%, respectively. These results support the assignment of the new isolates to the genus Clostridium and also distinguish them from other species of the genus Clostridium. Hence, it is proposed that strains MB9-7(T) and MB9-9 represent a novel species of the genus Clostridium, with the suggested name Clostridium algifaecis sp. nov. The type strain is MB9-7(T) ( =CGMCC 1.5188(T) =DSM 28783(T)).

  15. Subtle biological responses to increased CO2 concentrations by Phaeocystis globosa Scherffel, a harmful algal bloom species

    NASA Astrophysics Data System (ADS)

    Wang, Yan; Smith, Walker O.; Wang, Xiaodong; Li, Shaoshan

    2010-05-01

    Recent investigations into the role of carbon dioxide on phytoplankton growth and composition have clearly shown differential effects among species and assemblages, suggesting that increases in oceanic CO2 may play a critical role in structuring lower trophic levels of marine systems in the future. Furthermore, alarming increases in the occurrence of harmful algal blooms (HABs) in coastal waters have been observed, and while not uniform among systems, appear in some manner to be linked to human impacts (eutrophication) on coastal systems. Models of HABs are in their infancy and do not at present include sophisticated biological effects or their environmental controls. Here we show that subtle biological responses occur in the HAB species Phaeocystis globosa Scherffel as a result of CO2 enrichment induced by gentle bubbling. The alga, which has a polymorphic life history involving the formation of both colonies and solitary cells, exhibited altered growth rates of colonial and solitary forms at [CO2] of 750 ppm, as well as increased colony formation. In addition, substantial modifications of elemental and photosynthetic constituents of the cells (C cell-1, N cell-1, potential quantum yield, chl a cell-1) occurred under elevated CO2 concentrations compared to those found at present CO2 levels. In contrast, other individual and population variables (e.g., colony diameter, total chlorophyll concentration, carbon/nitrogen ratio) were unaffected by increased CO2. Our results suggest that predictions of the future impacts of Phaeocystis blooms on coastal ecosystems and local biogeochemistry need to carefully examine the subtle biological responses of this alga in addition to community and ecosystem effects.

  16. Biosynthesis of metal nanoparticles using three marine plant species: anti-algal efficiencies against "Oscillatoria simplicissima".

    PubMed

    El-Kassas, Hala Y; Ghobrial, Mary G

    2017-01-29

    This study aims at controlling of the cyanobacteria Oscillatoria simplicissima, those that produce neurotoxins and have negative impacts on the aquatic organisms, using biosynthesized metal nanoparticles (NPs). Silver-NPs (Ag-NPs) have been successfully biosynthesized using Nannochloropsis oculata and Tetraselmis tetrathele cultures. Also, Ag-NPs and iron oxide-NPs (Fe3O4-NPs) were synthesized by Halophila stipulacea aqueous extract. The structural composition of the different biosynthesized NPs was studied. The algae cultures and the extract were used as reductants of AgNO3, and brown colors due to Ag-NP biosynthesis were observed. Silver signals were recorded in their corresponding EDX spectra. FTIR analyses showed that proteins in N. oculata and T. tetrathele cultures reduced AgNO3, and aromatic compounds stabilized the biogenic Ag-NPs. H. stipulacea extract contains proteins and polyphenols that could be in charge for the reduction of silver and iron ions into nanoparticles and polysaccharides which stabilized the biosynthesized Ag-NPs and Fe3O4-NPs. The Ag-NPs biosynthesized by T. tetrathele cultures and H. stipulacea aqueous extract exerted outstanding negative impacts on O. simplicissima (optical density and total chlorophyll) and the Ag-NPs biosynthesized using N. oculata culture exerted the moderate performance. The study results suggest that the bioactive compounds present in the FTIR profiles of the Ag-NPs and or ionic silver may be the main contributors in their anti-algal effects. A trial to use the biosynthesized Fe3O4-NPs using H. stipulacea aqueous extract to separate Ag-NPs was successfully carried out. Since the synthesis and applications of nanomaterials is a hot subject of research, the study outcomes not only provide a green approach for the synthesis of metal-NPs but also open the way for more nanoparticle applications.

  17. Algal and Invertebrate Community Composition along Agricultural Gradients: A Comparative Study from Two Regions of the Eastern United States

    USGS Publications Warehouse

    Calhoun, Daniel L.; Gregory, M. Brian; Weyers, Holly S.

    2008-01-01

    Benthic algal and invertebrate communities in two Coastal Plain regions of the Eastern United States?the Delmarva Peninsula (27 sites) and Georgia Upper Coastal Plain (29 sites)?were assessed to determine if aspects of agricultural land use and nutrient conditions (dissolved and whole-water nitrogen and phosphorus) could be linked to biological community compositions. Extensive effort was made to compile land-use data describing the basin and riparian conditions at multiple scales to determine if scale played a role in these relations. Large differences in nutrient condition were found between the two study areas, wherein on average, the Delmarva sites had three times the total phosphorus and total nitrogen as did the sites in the Georgia Upper Coastal Plain. A statistical approach was undertaken that included multivariate correlations between Bray-Curtis similarity matrices of the biological communities and Euclidean similarity matrices of instream nutrients and land-use categories. Invertebrate assemblage composition was most associated with land use near the sampled reach, and algal diatom assemblage composition was most associated with land use farther from the streams and into the watersheds. Link tree analyses were conducted to isolate portions of nonmetric multidimensional scaling ordinations of community compositions that could be explained by break points in abiotic datasets. Invertebrate communities were better defined by factors such as agricultural land use near streams and geographic position. Algal communities were better defined by agricultural land use at the basin scale and instream nutrient chemistry. Algal autecological indices were more correlated with gradients of nutrient condition than were typically employed invertebrate metrics and may hold more promise in indicating nutrient impairment in these regions. Nutrient conditions in the respective study areas are compared to draft nutrient criteria established by the U.S. Environmental Protection

  18. Spatial variability, structure and composition of crustose algal communities in Diadema africanum barrens

    NASA Astrophysics Data System (ADS)

    Sangil, Carlos; Sansón, Marta; Díaz-Villa, Tania; Hernández, José Carlos; Clemente, Sabrina; Afonso-Carrillo, Julio

    2014-12-01

    Crustose algal communities were studied in Diadema africanum urchin barrens around Tenerife (Canary Islands, NE Atlantic). A hierarchical nested sampling design was used to study patterns of community variability at different spatial scales (sectors, three sides of the island; sites within each sector, 5-10 km apart; stations within each site, 50-100 m apart). Although noncrustose species contributed the most to community richness, cover was dominated by crustose forms, like the coralline algae Hydrolithon farinosum, H. samoënse, H. onkodes, Neogoniolithon orotavicum and N. hirtum, and the phaeophycean Pseudolithoderma adriaticum. The structure of these communities showed high spatial variability, and we found differences in the structure of urchin barrens when compared across different spatial scales. Multivariate analysis showed that variability in community structure was related to the five environmental variables studied (wave exposure, urchin density, substrate roughness, productivity and depth). Wave exposure was the variable that contributed most to community variability, followed by urchin density and substrate roughness. Productivity and depth had limited influence. The effects of these variables differed depending on the spatial scale; wave exposure and productivity were the main variables influencing community changes at the largest scale (between different sectors of the island), while D. africanum density, roughness and depth were the most influential at medium and small scales.

  19. The death mechanism of the harmful algal bloom species Alexandrium tamarense induced by algicidal bacterium Deinococcus sp. Y35

    PubMed Central

    Li, Yi; Zhu, Hong; Lei, Xueqian; Zhang, Huajun; Cai, Guanjing; Chen, Zhangran; Fu, Lijun; Xu, Hong; Zheng, Tianling

    2015-01-01

    Harmful algal blooms (HABs) cause a variety of deleterious effects on aquatic ecosystems, especially the toxic dinoflagellate Alexandrium tamarense, which poses a serious threat to marine economic and human health based on releasing paralytic shellfish poison into the environment. The algicidal bacterium Deinococcus sp. Y35 which can induce growth inhibition on A. tamarense was used to investigate the functional mechanism. The growth status, reactive oxygen species (ROS) content, photosynthetic system and the nuclear system of algal cells were determined under algicidal activity. A culture of strain Y35 not only induced overproduction of ROS in algal cells within only 0.5 h of treatment, also decrease the total protein content as well as the response of the antioxidant enzyme. Meanwhile, lipid peroxidation was induced and cell membrane integrity was lost. Photosynthetic pigments including chlorophyll a and carotenoid decreased along with the photosynthetic efficiency being significantly inhibited. At the same time, photosynthesis-related gene expression showed down-regulation. More than, the destruction of cell nuclear structure and inhibition of proliferating cell nuclear antigen (PCNA) related gene expression were confirmed. The potential functional mechanism of the algicidal bacterium on A. tamarense was investigated and provided a novel viewpoint which could be used in HABs control. PMID:26441921

  20. The death mechanism of the harmful algal bloom species Alexandrium tamarense induced by algicidal bacterium Deinococcus sp. Y35.

    PubMed

    Li, Yi; Zhu, Hong; Lei, Xueqian; Zhang, Huajun; Cai, Guanjing; Chen, Zhangran; Fu, Lijun; Xu, Hong; Zheng, Tianling

    2015-01-01

    Harmful algal blooms (HABs) cause a variety of deleterious effects on aquatic ecosystems, especially the toxic dinoflagellate Alexandrium tamarense, which poses a serious threat to marine economic and human health based on releasing paralytic shellfish poison into the environment. The algicidal bacterium Deinococcus sp. Y35 which can induce growth inhibition on A. tamarense was used to investigate the functional mechanism. The growth status, reactive oxygen species (ROS) content, photosynthetic system and the nuclear system of algal cells were determined under algicidal activity. A culture of strain Y35 not only induced overproduction of ROS in algal cells within only 0.5 h of treatment, also decrease the total protein content as well as the response of the antioxidant enzyme. Meanwhile, lipid peroxidation was induced and cell membrane integrity was lost. Photosynthetic pigments including chlorophyll a and carotenoid decreased along with the photosynthetic efficiency being significantly inhibited. At the same time, photosynthesis-related gene expression showed down-regulation. More than, the destruction of cell nuclear structure and inhibition of proliferating cell nuclear antigen (PCNA) related gene expression were confirmed. The potential functional mechanism of the algicidal bacterium on A. tamarense was investigated and provided a novel viewpoint which could be used in HABs control.

  1. A systematic study on the extractability of arsenic species from algal certified reference material IAEA-140/TM (Fucus sp., Sea Plant Homogenate) using methanol/water extractant mixtures.

    PubMed

    van Elteren, Johannes Teun; Slejkovec, Zdenka; Kahn, Markus; Goessler, Walter

    2007-02-28

    Using methanol/water mixtures (from pure water to pure methanol), with different desorption and solubility parameters, and varying extractant volume to algal mass (V/m) ratios, the extractability of arsenic species from CRM IAEA-140/TM was investigated. A linear sorption isotherm-based model was developed to process the data obtained with variable volume extraction, allowing the unambiguous deduction of the maximal extractable species concentrations under the specific extraction conditions, even for more stable species. The maximal extractable arsenic fraction ranged from 41 to 68% of the total arsenic concentration in CRM IAEA-140/TM, depending on the extractant composition, with pure methanol giving the lowest extraction yield and pure water giving erratic extractability (probably due to bad wettability). The main arsenic species quantified in the methanol/water extracts were arsenosugars, with arsenosugars 1 (glycerol arsenosugar), 3 (sulfonate arsenosugar) and 4 (sulfate arsenosugar) making up ca. 90% of the maximal extractable arsenic. The rest accounts for DMA (dimethylarsinate), arsenosugar 2 (phosphate arsenosugar) and As(V). There is no clear extraction pattern emerging from the data although it may be seen that extraction of more polar species (e.g. arsenosugar 1) is favoured in pure methanol and less polar more ionic species (e.g. arsenosugar 2 and As(V)) in methanol extractants with a higher water percentage. The precise and highly accurate data may be used for quality control purposes under strictly followed extraction conditions since the extraction is operationally defined. Additionally, the variable volume extraction methodology presented may be applied to other elemental species in other matrices using other extractants. Although this approach does not maximise the absolute extractability but only that which is extractant-specific, experimentators are forewarned that in most cases only a fingerprint of the extractant-specific species is produced

  2. A shift in the dominant toxin-producing algal species in central California alters phycotoxins in food webs

    USGS Publications Warehouse

    Jester, R.; Lefebvre, K.; Langlois, G.; Vigilant, V.; Baugh, K.; Silver, M.W.

    2009-01-01

    In California, the toxic algal species of primary concern are the dinoflagellate Alexandrium catenella and members of the pennate diatom genus Pseudo-nitzschia, both producers of potent neurotoxins that are capable of sickening and killing marine life and humans. During the summer of 2004 in Monterey Bay, we observed a change in the taxonomic structure of the phytoplankton community-the typically diatom-dominated community shifted to a red tide, dinoflagellate-dominated community. Here we use a 6-year time series (2000-2006) to show how the abundance of the dominant harmful algal bloom (HAB) species in the Bay up to that point, Pseudo-nitzschia, significantly declined during the dinoflagellate-dominated interval, while two genera of toxic dinoflagellates, Alexandrium and Dinophysis, became the predominant toxin producers. This change represents a shift from a genus of toxin producers that typically dominates the community during a toxic bloom, to HAB taxa that are generally only minor components of the community in a toxic event. This change in the local HAB species was also reflected in the toxins present in higher trophic levels. Despite the small contribution of A. catenella to the overall phytoplankton community, the increase in the presence of this species in Monterey Bay was associated with an increase in the presence of paralytic shellfish poisoning (PSP) toxins in sentinel shellfish and clupeoid fish. This report provides the first evidence that PSP toxins are present in California's pelagic food web, as PSP toxins were detected in both northern anchovies (Engraulis mordax) and Pacific sardines (Sardinops sagax). Another interesting observation from our data is the co-occurrence of DA and PSP toxins in both planktivorous fish and sentinel shellfish. We also provide evidence, based on the statewide biotoxin monitoring program, that this increase in the frequency and abundance of PSP events related to A. catenella occurred not just in Monterey Bay, but also

  3. Secreted arginases from phylogenetically farrelated lichen species act as cross-recognition factors for two different algal cells.

    PubMed

    Legaz, María-Estrella; Fontaniella, Blanca; Millanes, Ana-María; Carlos, Vicente

    2004-08-01

    Purified arginases secreted from Evernia prunastri and Xanthoria parietina thalli hydrolyze arginine in a Mn2+ -dependent reaction. Ca2+ cannot replace Mn2+, but its addition to reaction mixtures in the presence of Mn2+ significantly inhibited arginase activity. Arginases from both lichen species also show lectin function, binding to the cell wall of both homologous and heterologous algae. Such binding is enhanced by both Ca2+ and Mn2+ and results in cytoagglutination, which is counteracted by alpha-D-galactose. A putative ligand for these lectins consists of a glycosylated urease, the polysaccharide moiety of which is uniquely composed of alpha-D-galactose. Binding of lectins inhibits its enzymatic activity, which is recovered after desorption of the lectin with alpha-D-galactose. Urease is also eluted from arginase-agarose columns by using alpha-D-galactose as eluent. Data demonstrate ligand-dependent retention of the fungal lectin on the algal cell surface and this is consistent with a model of recognition of compatible algae, through which algal cells would form a lichen with a lectin-secreting fungus only when these cells contain the specific ligand for the lectin in their cell walls. This is, lectin binding is used as a mechanism for ensuring specificity in the association.

  4. Algal bioremediation of waste waters from land-based aquaculture using ulva: selecting target species and strains.

    PubMed

    Lawton, Rebecca J; Mata, Leonardo; de Nys, Rocky; Paul, Nicholas A

    2013-01-01

    The optimised reduction of dissolved nutrient loads in aquaculture effluents through bioremediation requires selection of appropriate algal species and strains. The objective of the current study was to identify target species and strains from the macroalgal genus Ulva for bioremediation of land-based aquaculture facilities in Eastern Australia. We surveyed land-based aquaculture facilities and natural coastal environments across three geographic locations in Eastern Australia to determine which species of Ulva occur naturally in this region and conducted growth trials at three temperature treatments on a subset of samples from each location to determine whether local strains had superior performance under local environmental conditions. DNA barcoding using the markers ITS and tufA identified six species of Ulva, with U. ohnoi being the most common blade species and U. sp. 3 the most common filamentous species. Both species occurred at multiple land-based aquaculture facilities in Townsville and Brisbane and multiple strains of each species grew well in culture. Specific growth rates of U. ohnoi and U. sp. 3 were high (over 9% and 15% day(-1) respectively) across temperature treatments. Within species, strains of U. ohnoi had higher growth in temperatures corresponding to local conditions, suggesting that strains may be locally adapted. However, across all temperature treatments Townsville strains had the highest growth rates (11.2-20.4% day(-1)) and Sydney strains had the lowest growth rates (2.5-8.3% day(-1)). We also found significant differences in growth between strains of U. ohnoi collected from the same geographic location, highlighting the potential to isolate and cultivate fast growing strains. In contrast, there was no clearly identifiable competitive strain of filamentous Ulva, with multiple species and strains having variable performance. The fast growth rates and broad geographical distribution of U. ohnoi make this an ideal species to target for

  5. Producing docosahexaenoic acid (DHA)-rich algae from biodiesel-derived crude glycerol: effects of impurities on DHA production and algal biomass composition.

    PubMed

    Pyle, Denver J; Garcia, Rafael A; Wen, Zhiyou

    2008-06-11

    Crude glycerol is the primary byproduct of the biodiesel industry. Producing docosahexaenoic acid (DHA, 22:6 n-3) through fermentation of the alga Schizochytrium limacinum on crude glycerol provides a unique opportunity to utilize a large quantity of this byproduct. The objective of this work is to investigate the effects of impurities contained in the crude glycerol on DHA production and algal biomass composition. Crude glycerol streams were obtained from different biodiesel refineries. All of the glycerol samples contained methanol, soaps, and various elements including calcium, phosphorus, potassium, silicon, sodium, and zinc. Both methanol and soap were found to negatively influence algal DHA production; these two impurities can be removed from culture medium by evaporation through autoclaving (for methanol) and by precipitation through pH adjustment (for soap). The glycerol-derived algal biomass contained 45-50% lipid, 14-20% protein, and 25% carbohydrate, with 8-13% ash content. Palmitic acid (C16:0) and DHA were the two major fatty acids in the algal lipid. The algal biomass was rich in lysine and cysteine, relative to many common feedstuffs. Elemental analysis by inductively coupled plasma showed that boron, calcium, copper, iron, magnesium, phosphorus, potassium, silicon, sodium, and sulfur were present in the biomass, whereas no heavy metals (such as mercury) were detected in the algal biomass. Overall, the results show that crude glycerol was a suitable carbon source for algal fermentation. The crude glycerol-derived algal biomass had a high level of DHA and a nutritional profile similar to that of commercial algal biomass, suggesting a great potential for using crude glycerol-derived algae in omega-3-fortified food or feed.

  6. Impact of several harmful algal bloom (HAB) causing species, on life history characteristics of rotifer Brachionus plicatilis Müller

    NASA Astrophysics Data System (ADS)

    Lin, Jianing; Yan, Tian; Zhang, Qingchun; Zhou, Mingjiang

    2016-07-01

    In recent years, harmful algal blooms (HABs) have occurred frequently along the coast of China, and have been exhibiting succession from diatom- to dinoflagellate-dominated blooms. To examine the effects of different diatom and dinoflagellate HABs, the life history parameters of rotifers ( Brachionus plicatilis Müller) were measured after exposure to different concentrations of HAB species. The HAB species examined included a diatom ( Skeletonema costatum) and four dinoflagellates ( Prorocentrum donghaiense, Alexandrium catenella, Prorocentrum lima and Karlodinium veneficum). Compared with the control treatment (CT), the diatom S. costatum showed no adverse impacts on rotifers. Exposure to dinoflagellates at densities equivalent to those measured in the field resulted in a reduction in all the life history parameters measured. This included a reduction in: lifetime egg production (CT: 20.34 eggs/ind.) reduced to 10.11, 3.22, 4.17, 7.16 eggs/ind., life span (CT: 394.53 h) reduced to 261.11, 162.90, 203.67, 196 h, net reproductive rate (CT: 19.51/ind.) reduced to 3.01, 1.26, 3.53, 5.96/ind., finite rate of increase (CT: 1.47/d) reduced to 1.16, 1.03, 1.33, 1.38/d, and intrinsic rate of population increase (CT: 0.39/d) reduced to 0.15, 0.03, 0.28, 0.32/d, for the dinoflagellates P. donghaiense, A. catenella, P. lima and K. veneficum, respectively. The results showed that the diatom S. costatum had no detrimental consequences on the reproduction and growth of B. plicatilis, however, the four dinoflagellates tested did show adverse effects. This suggests that dinoflagellate HABs may suppress microzooplankton, resulting in an increase in algal numbers.

  7. Accelerating Commercialization of Algal Biofuels Through Partnerships (Brochure)

    SciTech Connect

    Not Available

    2011-10-01

    This brochure describes National Renewable Energy Laboratory's (NREL's) algal biofuels research capabilities and partnership opportunities. NREL is accelerating algal biofuels commercialization through: (1) Advances in applied biology; (2) Algal strain development; (3) Development of fuel conversion pathways; (4) Techno-economic analysis; and (5) Development of high-throughput lipid analysis methodologies. NREL scientists and engineers are addressing challenges across the algal biofuels value chain, including algal biology, cultivation, harvesting and extraction, and fuel conversion. Through partnerships, NREL can share knowledge and capabilities in the following areas: (1) Algal Biology - A fundamental understanding of algal biology is key to developing cost-effective algal biofuels processes. NREL scientists are experts in the isolation and characterization of microalgal species. They are identifying genes and pathways involved in biofuel production. In addition, they have developed a high-throughput, non-destructive technique for assessing lipid production in microalgae. (2) Cultivation - NREL researchers study algal growth capabilities and perform compositional analysis of algal biomass. Laboratory-scale photobioreactors and 1-m2 open raceway ponds in an on-site greenhouse allow for year-round cultivation of algae under a variety of conditions. A bioenergy-focused algal strain collection is being established at NREL, and our laboratory houses a cryopreservation system for long-term maintenance of algal cultures and preservation of intellectual property. (3) Harvesting and Extraction - NREL is investigating cost-effective harvesting and extraction methods suitable for a variety of species and conditions. Areas of expertise include cell wall analysis and deconstruction and identification and utilization of co-products. (4) Fuel Conversion - NREL's excellent capabilities and facilities for biochemical and thermochemical conversion of biomass to biofuels are being

  8. Composition, Buoyancy Regulation and Fate of Ice Algal Aggregates in the Central Arctic Ocean

    PubMed Central

    Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L.; Glud, Ronnie N.; Boetius, Antje

    2014-01-01

    Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8–35 and 9–40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m−2, maintaining an estimated net primary production of 0.4–40 mg C m−2 d−1, and accounted for 3–80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities. PMID:25208058

  9. Composition, buoyancy regulation and fate of ice algal aggregates in the Central Arctic Ocean.

    PubMed

    Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L; Glud, Ronnie N; Boetius, Antje

    2014-01-01

    Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8-35 and 9-40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m(-2), maintaining an estimated net primary production of 0.4-40 mg C m(-2) d(-1), and accounted for 3-80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities.

  10. Effects of acidification on algal assemblages in temporary ponds

    SciTech Connect

    Glackin, M.E.; Pratt, J.R.

    1994-12-31

    Atmospheric deposition monitoring in Pennsylvania has characterized a steep gradient of acidic ion depositions across the north-central portion of the state. This study evaluated acidification effects on the composition of algal assemblages in temporary ponds in two forested areas exposed to atmospheric deposition that varied in degree of acidity. Artificial substrates were used to sample and compare the algal assemblages in the two areas. Colonized communities were also transplanted to lower pH ponds to observe changes in species composition. A laboratory microcosm experiment manipulating pH was conducted to reduce the variables that differed between the two areas. Fewer algal taxa were present in lower pH ponds, on colonized substrates after transplant to lower pH ponds, and in lower pH laboratory treatments. Species composition was altered in the lower pH conditions. Most taxa that were excluded from the lower pH ponds naturally also did not survive when experimentally introduced to those conditions. These results suggest that acidification of temporary ponds can alter the structure of algal communities. There is interest in a possible link between acid deposition and reports of worldwide declines in amphibian populations. Algae are an important food source for larval amphibians, such as the wood frog, which require temporary ponds to breed. Changes in algal species composition could potentially impact the temporary pond and forest ecosystem.

  11. Treatment of Dairy and Swine Manure Effluents Using Freshwater Algae: Fatty Acid Content and Composition of Algal Biomass at Different Manure Loading Rates

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An alternative to land spreading of manure effluents is to grow crops of algae on the N and P present in the manure and convert manure N and P into algal biomass. The objective of this study was to determine how fatty acid (FA) content and composition of algae respond to changes in the type of manu...

  12. Capillary Electrophoresis Single-Strand Conformational Polymorphisms as a Method to Differentiate Algal Species.

    PubMed

    Jernigan, Alice; Hestekin, Christa

    2015-01-01

    Capillary electrophoresis single-strand conformational polymorphism (CE-SSCP) was explored as a fast and inexpensive method to differentiate both prokaryotic (blue-green) and eukaryotic (green and brown) algae. A selection of two blue-green algae (Nostoc muscorum and Anabaena inaequalis), five green algae (Chlorella vulgaris, Oedogonium foveolatum, Mougeotia sp., Scenedesmus quadricauda, and Ulothrix fimbriata), and one brown algae (Ectocarpus sp.) were examined and CE-SSCP electropherogram "fingerprints" were compared to each other for two variable regions of either the 16S or 18S rDNA gene. The electropherogram patterns were remarkably stable and consistent for each particular species. The patterns were unique to each species, although some common features were observed between the different types of algae. CE-SSCP could be a useful method for monitoring changes in an algae species over time as potential shifts in species occurred.

  13. Capillary Electrophoresis Single-Strand Conformational Polymorphisms as a Method to Differentiate Algal Species

    PubMed Central

    Jernigan, Alice; Hestekin, Christa

    2015-01-01

    Capillary electrophoresis single-strand conformational polymorphism (CE-SSCP) was explored as a fast and inexpensive method to differentiate both prokaryotic (blue-green) and eukaryotic (green and brown) algae. A selection of two blue-green algae (Nostoc muscorum and Anabaena inaequalis), five green algae (Chlorella vulgaris, Oedogonium foveolatum, Mougeotia sp., Scenedesmus quadricauda, and Ulothrix fimbriata), and one brown algae (Ectocarpus sp.) were examined and CE-SSCP electropherogram “fingerprints” were compared to each other for two variable regions of either the 16S or 18S rDNA gene. The electropherogram patterns were remarkably stable and consistent for each particular species. The patterns were unique to each species, although some common features were observed between the different types of algae. CE-SSCP could be a useful method for monitoring changes in an algae species over time as potential shifts in species occurred. PMID:26101693

  14. Gastropod grazers and nutrients, but not light, interact in determining periphytic algal diversity.

    PubMed

    Liess, Antonia; Kahlert, Maria

    2007-05-01

    The potential interactions of grazing, nutrients and light in influencing autotroph species diversity have not previously been considered. Earlier studies have shown that grazing and nutrients interact in determining autotroph species diversity, since grazing decreases species diversity when nutrients (i.e. N or P) limit autotroph growth, but increases it when nutrients are replete. We hypothesized that increased light intensities would intensify the interactions between grazing and nutrients on algal species diversity, resulting in even stronger reductions in algal species diversity through grazing under nutrient-poor conditions, and to even stronger increases of algal species diversity through grazing under nutrient-rich conditions. We studied the effects of grazing (absent, present), nutrients (ambient, N + P enriched) and light (low light, high light) on benthic algal diversity and periphyton C:nutrient ratios (which can indicate algal nutrient limitation) in a factorial laboratory experiment, using the gastropod grazer Viviparus viviparus. Grazing decreased algal biomass and algal diversity, but increased C:P and N:P ratios of periphyton. Grazing also affected periphyton species composition, by decreasing the proportion of Spirogyra sp. and increasing the proportion of species in the Chaetophorales. Grazing effects on diversity as well as on periphyton N:P ratios were weakened when nutrients were added (interaction between grazing and nutrients). Chlorophyll a (Chl a) per area increased with nutrient addition and decreased with high light intensities. Light did not increase the strength of the interaction between grazing and nutrients on periphytic algal diversity. This study shows that nutrient addition substantially reduced the negative effects of grazing on periphytic algal diversity, whereas light did not interact with grazing or nutrient enrichment in determining periphytic algal diversity.

  15. Effect of phosphorous concentrations on sedimentary distributions and isotopic composition of algal lipid biomarkers in lakes from central Switzerland

    NASA Astrophysics Data System (ADS)

    Ladd, N.; Dubois, N.; Schubert, C. J.

    2015-12-01

    Lakes in the Swiss central plateau experienced increasing anthropogenic phosphorous loading throughout much of the 20th century. Since the 1980s concerted remediation efforts on the part of the Swiss government have significantly reduced P concentrations in most lakes and reversed previous eutrophication. However, P concentrations remain elevated above their preindustrial levels in many sites. High quality monitoring of lake nutrient levels since the 1950s, along with several lakes of wide-ranging P concentrations in close proximity, make central Switzerland an ideal location for studying the ways in which nutrient loading affects the organic composition of lacustrine sediments. Results of such studies can be used to develop proxies of eutrophication in sites where fewer historical data exist, and to reconstruct historical P concentrations in local lakes from the time before record keeping began. We analyzed the distributions of algal lipid biomarkers from surface sediment and sediment traps collected in the spring of 2015 from ten lakes with variable P concentrations in central Switzerland. Sedimentary lipid distributions from these lakes confirm that biomarkers associated with algal and cyanobacterial sources are more abundant in the sediment of lakes with greater P loading. The dry sedimentary concentrations of biomarkers such as brassicasterol (primarily diatom source) and diplopterol (cyanobacteria source), as well as the less source specific short-chain n-alkanols, linearly increase from 0.3 - 1.9 μg/g as total phosphorous in the upper water column increases by 1 μg/L over a range of 7 - 50 μg/L. We also present preliminary hydrogen isotope data from these biomarkers. Hydrogen isotopes of algal lipids primarily reflect the source water in which the algae grew, and this relationship has been developed as a paleohydrologic proxy. However, laboratory cultures of marine algae demonstrate that they discriminate more against 2H under nutrient replete conditions

  16. Screening and identification of early warning algal species for metal contamination in fresh water bodies polluted from point and non-point sources.

    PubMed

    Rai, U N; Dubey, Smita; Shukla, O P; Dwivedi, S; Tripathi, R D

    2008-09-01

    The water bodies of Lucknow, Unnao and Kanpur (U.P.), India polluted through various point and non point sources were found to be either eutrophic or oligotrophic in nature. These water bodies supported a great number of algal diversity, which varied seasonally depending upon the physico-chemical properties of water. Further, the water bodies polluted through non point sources supports diverse algal species, while the water bodies polluted through point sources supports growth of tolerant blue green algae. High biomass producing algal species growing in these water bodies have accumulated significant amount of metals in their tissues. Maximum amount of Fe was found accumulated by species of Oedogonium sp. II (20,523.00 microg g(-1) dw) and Spirogyra sp. I (4,520.00 microg g(-1) dw), while maximum Chromium (Cr) was found accumulated in Phormedium bohneri (2,109.00 microg g(-1) dw) followed by Oscillatoria nigra (1,957.88 microg g(-1) dw) and Oedogonium sp. I (156.00 microg g(-1) dw) and Ni in Ulothrix sp. (495.00 microg g(-1) dw). Results showed that some of these forms growing in polluted environment and accumulating high amounts of toxic metals may be used as bioindicator species, however, their performance in metal contaminated water under different ecological niche is to be ascertained.

  17. Future climate change scenarios differentially affect three abundant algal species in southwestern Australia.

    PubMed

    Phelps, Charlie M; Boyce, Mary C; Huggett, Megan J

    2017-02-21

    Three species of macroalgae (Ecklonia radiata, Sargassum linearifolium, and Laurencia brongniartii) were subjected to future climate change conditions, tested directly for changes in their physiology and chemical ecology, and used in feeding assays with local herbivores to identify the indirect effects of climatic stressors on subsequent levels of herbivory. Each alga had distinct physical and chemical responses to the changes in environmental conditions. In high temperature conditions, S. linearifolium exhibited high levels of bleaching and low maximum quantum yield. For E. radiata, the alga became more palatable to herbivores and the C:N ratios were either higher or lower, dependent on the treatment. Laurencia brongniartii was effected in all manipulations when compared to controls, with increases in bleaching, blade density, and C:N ratios and decreases in growth, maximum quantum yield, blade toughness, total phenolics and consumption by mesograzers. The differential responses we observed in each species have important implications for benthic communities in projected climate change conditions and we suggest that future studies target multi-species assemblage responses.

  18. Algal biofuels.

    PubMed

    Razeghifard, Reza

    2013-11-01

    The world is facing energy crisis and environmental issues due to the depletion of fossil fuels and increasing CO2 concentration in the atmosphere. Growing microalgae can contribute to practical solutions for these global problems because they can harvest solar energy and capture CO2 by converting it into biofuel using photosynthesis. Microalgae are robust organisms capable of rapid growth under a variety of conditions including in open ponds or closed photobioreactors. Their reduced biomass compounds can be used as the feedstock for mass production of a variety of biofuels. As another advantage, their ability to accumulate or secrete biofuels can be controlled by changing their growth conditions or metabolic engineering. This review is aimed to highlight different forms of biofuels produced by microalgae and the approaches taken to improve their biofuel productivity. The costs for industrial-scale production of algal biofuels in open ponds or closed photobioreactors are analyzed. Different strategies for photoproduction of hydrogen by the hydrogenase enzyme of green algae are discussed. Algae are also good sources of biodiesel since some species can make large quantities of lipids as their biomass. The lipid contents for some of the best oil-producing strains of algae in optimized growth conditions are reviewed. The potential of microalgae for producing petroleum related chemicals or ready-make fuels such as bioethanol, triterpenic hydrocarbons, isobutyraldehyde, isobutanol, and isoprene from their biomass are also presented.

  19. Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea.

    PubMed

    Zubkov, M V; Fuchs, B M; Archer, S D; Kiene, R P; Amann, R; Burkill, P H

    2001-05-01

    The algal osmolyte, dimethylsulphoniopropionate (DMSP), is abundant in the surface oceans and is the major precursor of dimethyl sulphide (DMS), a gas involved in global climate regulation. Here, we report results from an in situ Lagrangian study that suggests a link between the microbially driven fluxes of dissolved DMSP (DMSPd) and specific members of the bacterioplankton community in a North Sea coccolithophore bloom. The bacterial population in the bloom was dominated by a single species related to the genus Roseobacter, which accounted for 24% of the bacterioplankton numbers and up to 50% of the biomass. The abundance of the Roseobacter cells showed significant paired correlation with DMSPd consumption and bacterioplankton production, whereas abundances of other bacteria did not. Consumed DMSPd (28 nM day(-1)) contributed 95% of the sulphur and up to 15% of the carbon demand of the total bacterial populations, suggesting the importance of DMSP as a substrate for the Roseobacter-dominated bacterioplankton. In dominating DMSPd flux, the Roseobacter species may exert a major control on DMS production. DMSPd turnover rate was 10 times that of DMS (2.7 nM day(-1)), indicating that DMSPd was probably the major source of DMS, but that most of the DMSPd was metabolized without DMS production. Our study suggests that single species of bacterioplankton may at times be important in metabolizing DMSP and regulating the generation of DMS in the sea.

  20. The seeding and cultivation of a tropical species of filamentous Ulva for algal biomass production.

    PubMed

    Carl, Christina; de Nys, Rocky; Paul, Nicholas A

    2014-01-01

    Filamentous species of Ulva are ideal for cultivation because they are robust with high growth rates and maintained across a broad range of environments. Temperate species of filamentous Ulva are commercially cultivated on nets which can be artificially 'seeded' under controlled conditions allowing for a high level of control over seeding density and consequently biomass production. This study quantified for the first time the seeding and culture cycle of a tropical species of filamentous Ulva (Ulva sp. 3) and identified seeding density and nursery period as key factors affecting growth and biomass yield. A seeding density of 621,000 swarmers m(-1) rope in combination with a nursery period of five days resulted in the highest growth rate and correspondingly the highest biomass yield. A nursery period of five days was optimal with up to six times the biomass yield compared to ropes under either shorter or longer nursery periods. These combined parameters of seeding density and nursery period resulted in a specific growth rate of more than 65% day(-1) between 7 and 10 days of outdoor cultivation post-nursery. This was followed by a decrease in growth through to 25 days. This study also demonstrated that the timing of harvest is critical as the maximum biomass yield of 23.0 ± 8.8 g dry weight m(-1) (228.7 ± 115.4 g fresh weight m(-1)) was achieved after 13 days of outdoor cultivation whereas biomass degraded to 15.5 ± 7.3 g dry weight m(-1) (120.2 ± 71.8 g fresh weight m(-1)) over a longer outdoor cultivation period of 25 days. Artificially seeded ropes of Ulva with high biomass yields over short culture cycles may therefore be an alternative to unattached cultivation in integrated pond-based aquaculture systems.

  1. The Seeding and Cultivation of a Tropical Species of Filamentous Ulva for Algal Biomass Production

    PubMed Central

    Carl, Christina; de Nys, Rocky; Paul, Nicholas A.

    2014-01-01

    Filamentous species of Ulva are ideal for cultivation because they are robust with high growth rates and maintained across a broad range of environments. Temperate species of filamentous Ulva are commercially cultivated on nets which can be artificially ‘seeded’ under controlled conditions allowing for a high level of control over seeding density and consequently biomass production. This study quantified for the first time the seeding and culture cycle of a tropical species of filamentous Ulva (Ulva sp. 3) and identified seeding density and nursery period as key factors affecting growth and biomass yield. A seeding density of 621,000 swarmers m-1 rope in combination with a nursery period of five days resulted in the highest growth rate and correspondingly the highest biomass yield. A nursery period of five days was optimal with up to six times the biomass yield compared to ropes under either shorter or longer nursery periods. These combined parameters of seeding density and nursery period resulted in a specific growth rate of more than 65% day−1 between 7 and 10 days of outdoor cultivation post-nursery. This was followed by a decrease in growth through to 25 days. This study also demonstrated that the timing of harvest is critical as the maximum biomass yield of 23.0±8.8 g dry weight m−1 (228.7±115.4 g fresh weight m−1) was achieved after 13 days of outdoor cultivation whereas biomass degraded to 15.5±7.3 g dry weight m−1 (120.2±71.8 g fresh weight m−1) over a longer outdoor cultivation period of 25 days. Artificially seeded ropes of Ulva with high biomass yields over short culture cycles may therefore be an alternative to unattached cultivation in integrated pond-based aquaculture systems. PMID:24897115

  2. The chemistry and immunochemistry of carrageenans from Eucheuma and related algal species.

    PubMed

    DiNinno, V; McCandless, E L

    1978-10-01

    Carrageenans from several species of Eucheuma have been fractionated into KC1-soluble and KC1-insoluble fractions and analyzed by the usual chemical procedures. An anti-kappa-carrageenan, the reactivity of which is directed to kappa-structures (i.e., 3-linked galactose 4-sulphate, and 4-linked 3,6-anhydrogalactose) was used to analyze these carrageenans immunochemically. The antibody preparation shows only a small amount of cross-reactivity with iota-type carrageenans and thus could be used to distinguish kappa- and iota-type carrageenans, the latter having an index of homology of less than 0.2. A comparison of chemical and immunochemical data yielded further information as to the nature of the carrageenan-anti-carrageenan interaction, as well as elucidating the finer structure of carrageenans.

  3. Species-specific engineered antifouling topographies: correlations between the settlement of algal zoospores and barnacle cyprids.

    PubMed

    Schumacher, James F; Aldred, Nick; Callow, Maureen E; Finlay, John A; Callow, James A; Clare, Anthony S; Brennan, Anthony B

    2007-01-01

    Novel, non-toxic antifouling technologies are focused on the manipulation of surface topography to deter settlement of the dispersal stages of fouling organisms. This study investigated the effect of the aspect ratio (feature height/feature width) of topographical features engineered in polydimethylsiloxane, on the settlement of cyprids of Balanus amphitrite and zoospores of Ulva linza. The correlation of relative aspect ratios to antifouling efficacy was proven to be significant. An increase in aspect ratio resulted in an increase of fouling deterrence for both zoospores and cyprids. The spore density of Ulva was reduced 42% with each unit increase in aspect ratio of the Ulva-specific Sharklet AF topography. Similarly, the number of settled cyprids was reduced 45% with each unit increase in aspect ratio. The newly described barnacle-specific Sharklet AF topography (40 microm feature height, aspect ratio of 2) reduced cyprid settled by 97%. Techniques have been developed to superimpose the smaller Ulva-specific topographies onto the barnacle-specific surfaces into a hierarchical structure to repel both organisms simultaneously. The results for spore settlement on first-generation hierarchical surfaces provide insight for the efficacious design of such structures when targeting multiple settling species.

  4. Biogas production from anaerobic digestion of Spirulina maxima algal biomass

    SciTech Connect

    Samson, R.; LeDuy, A.

    1982-08-01

    The photosynthetic spectrum of solar energy could be exploited for the production of chemical energy of methane through the combined algal-bacterial process. In this process, the algae are mass produced from light and from carbon in the first step. The algal biomass is then used as a nutrient for feeding the anaerobic digester, in the second step, for the production of methane by anaerobic bacteria. The carbon source for the production of algal biomass could be either organic carbon from wastewaters (for eucaryotic algae), or carbon dioxide from the atmosphere or from the combustion exhaust gases (for both prokaryotic and eukaryotic algae). The technical feasibility data on the anaerobic digestion of algal biomass have been reported for many species of algae including macroscopic algae and microscopic algae. Research being conducted in the authors' laboratory consists of using the semimicroscopic blue-green alga Spirulina maxima as the sole substrate for this combined algal-bacterial process. This species of alga is very attractive for the process because of its capability of using the atmospheric carbon dioxide as carbon source and its simple harvesting methods. Furthermore, it appeared that the fermentability of S. maxima is significantly higher than other microscopic algae. This communication presents the results on the anaerobic inoculum development by the adaptation technique. This inoculum was then used for the semicontinuous anaerobic digestion of S. maxima algal biomass. The evolutions of biogas production and composition, biogas yield, total volatile fatty acids, alkalinity, ammonia nitrogen, pH, and electrode potential were followed.

  5. Algicidal Effects of a Novel Marine Pseudoalteromonas Isolate (Class Proteobacteria, Gamma Subdivision) on Harmful Algal Bloom Species of the Genera Chattonella, Gymnodinium, and Heterosigma

    PubMed Central

    Lovejoy, Connie; Bowman, John P.; Hallegraeff, Gustaaf M.

    1998-01-01

    During a bacterial survey of the Huon Estuary in southern Tasmania, Australia, we isolated a yellow-pigmented Pseudoalteromonas strain (class Proteobacteria, gamma subdivision), designated strain Y, that had potent algicidal effects on harmful algal bloom species. This organism was identified by 16S rRNA sequencing as a strain with close affinities to Pseudoalteromonas peptidysin. This bacterium caused rapid cell lysis and death (within 3 h) of gymnodinoids (including Gymnodinium catenatum) and raphidophytes (Chattonella marina and Heterosigma akashiwo). It caused ecdysis of armored dinoflagellates (e.g., Alexandrium catenella, Alexandrium minutum, and Prorocentrum mexicanum), but the algal cultures then recovered over the subsequent 24 h. Strain Y had no effect on a cryptomonad (Chroomonas sp.), a diatom (Skeletonema sp.), a cyanobacterium (Oscillatoria sp.), and two aplastidic protozoans. The algicidal principle of strain Y was excreted into the seawater medium and lost its efficacy after heating. Another common bacterial species, Pseudoalteromonas carrageenovora, was isolated at the same time and did not have these algicidal effects. The minimum concentrations of strain Y required to kill G. catenatum were higher than the mean concentrations found in nature under nonbloom conditions. However, the new bacterium showed a chemotactic, swarming behavior that resulted in localized high concentrations around target organisms. These observations imply that certain bacteria could play an important role in regulating the onset and development of harmful algal blooms. PMID:9687434

  6. DNA barcoding unmasks overlooked diversity improving knowledge on the composition and origins of the Churchill algal flora

    PubMed Central

    2013-01-01

    Background Sampling expeditions to Churchill in the Canadian subarctic were completed with the aim of compiling a molecular-assisted survey of the macroalgal flora (seaweeds) for comparison to published accounts for this area, which are based on morphological identifications. Further, because the Churchill region was covered by ice until recently (~10,000 before present), the current algal flora has had to migrate from adjacent waters into that region. We used our DNA barcode data to predict the relative contribution of the North Atlantic and North Pacific floras (Likely Source Region) in repopulating the Churchill region following the most recent glacial retreat. Results We processed 422 collections representing ~50 morpho-species, which is the approximate number reported for this region, and generated DNA barcode data for 346 of these. In contrast to the morpho-species count, we recovered 57 genetic groups indicating overlooked species (this despite failing to generate barcode data for six of the ~50 morpho-species). However, we additionally uncovered numerous inconsistencies between the species that are currently listed in the Churchill flora (again as a result of overlooked species diversity, but combined with taxonomic confusion) and those identified following our molecular analyses including eight new records and another 17 genetic complexes in need of further study. Based on a comparison of DNA barcode data from the Churchill flora to collections from the contiguous Atlantic and Pacific floras we estimate that minimally 21% (possibly as much as 44%) of the Churchill flora was established by migration from the Pacific region with the balance of species arriving from the Atlantic (predominantly North American populations) following the last glacial retreat. Conclusions Owing to difficulties associated with the morphological identification of macroalgae, our results indicate that current comprehension of the Canadian Arctic flora is weak. We consider that

  7. Feeding behaviour of a serpulid polychaete: Turning a nuisance species into a natural resource to counter algal blooms?

    PubMed

    Leung, Jonathan Y S; Cheung, Napo K M

    2017-02-15

    Occurrence of algal blooms in coastal waters is predicted to be more prevalent in future. To minimize their occurrence, manipulating the grazing pressure by suspension feeders is a potential management strategy, but its effectiveness may depend on their feeding preference. Therefore, we assessed the clearance rate of a widespread serpulid polychaete Hydroides elegans in larval and adult stages on various coastal phytoplankton. Additionally, the growth and development of H. elegans after consuming these phytoplankton were determined to reflect its sustainability to counter algal blooms. Results showed that H. elegans can consume and utilize different phytoplankton, except diatom Thalassiosira pseudonana, for growth and development in both life stages. Given the fast-colonizing ability which allows easy manipulation of abundance, H. elegans is considered practically and biologically ideal for tackling algal blooms. Other suspension feeders with different feeding niches could be used in combination to maximize the versatility of the top-down control.

  8. Taxonomic and functional composition of the algal benthos exhibits similar successional trends in response to nutrient supply and current velocity.

    PubMed

    Larson, Chad A; Passy, Sophia I; Laanbroek, Riks

    2012-05-01

    In an effort to identify the causes and patterns of temporal change in periphytic communities, we examined biomass accumulation, taxonomic and functional composition, rate of species turnover, and pairwise species correlations in response to variability in current velocity and nutrient supply in artificial stream flumes. Divergent patterns in community growth and succession were observed between nutrient treatments and, to a lesser extent, between flow treatments best described by shifts in taxonomic and functional composition. Specifically, understory low profile species, tolerant to low resource supply, became dominant under low nutrients, while overstory high profile and motile species with higher nutrient demands dominated the high nutrient treatments. Increased resource supply or current velocity did not influence the species turnover rate, measured by a time-lag analysis. Interspecific interactions, especially competition, did not appear to be driving community dynamics, as the number of positive and negative pairwise species correlations ranged between low and extremely low, respectively. The overwhelming majority of correlations were not significant, indicating that species within the biofilm matrix were not perceptibly influencing one another. Thus, temporal trends in taxonomic and functional composition were largely environmentally driven, signifying that coexistence in biofilms is defined by the same mechanism along the hierarchy from species to functional groups.

  9. Kelp canopy facilitates understory algal assemblage via competitive release during early stages of secondary succession.

    PubMed

    Benes, Kylla M; Carpenter, Robert C

    2015-01-01

    Kelps are conspicuous foundation species in marine ecosystems that alter the composition of understory algal assemblages. While this may be due to changes in the competitive interactions between algal species, how kelp canopies mediate propagule supply and establishment success of understory algae is not well known. In Southern California, USA, Eisenia arborea forms dense kelp canopies in shallow subtidal environments and is associated with an understory dominated by red algal species. In canopy-free areas, however, the algal assemblage is comprised of mostly brown algal species. We used a combination of mensurative and manipulative experiments to test whether Eisenia facilitates the understory assemblage by reducing competition between these different types of algae by changes in biotic interactions and/or recruitment. Our results show Eisenia facilitates a red algal assemblage via inhibition of brown algal settlement into the canopy zone, allowing recruitment to occur by vegetative means rather than establishment of new individuals. In the canopy-free zone, however, high settlement and recruitment rates suggest competitive interactions shape the community there. These results demonstrate that foundation species alter the distribution and abundance of associated organisms by affecting not only interspecific interactions but also propagule supply and recruitment limitation.

  10. Algal biofuels from wastewater treatment high rate algal ponds.

    PubMed

    Craggs, R J; Heubeck, S; Lundquist, T J; Benemann, J R

    2011-01-01

    This paper examines the potential of algae biofuel production in conjunction with wastewater treatment. Current technology for algal wastewater treatment uses facultative ponds, however, these ponds have low productivity (∼10 tonnes/ha.y), are not amenable to cultivating single algal species, require chemical flocculation or other expensive processes for algal harvest, and do not provide consistent nutrient removal. Shallow, paddlewheel-mixed high rate algal ponds (HRAPs) have much higher productivities (∼30 tonnes/ha.y) and promote bioflocculation settling which may provide low-cost algal harvest. Moreover, HRAP algae are carbon-limited and daytime addition of CO(2) has, under suitable climatic conditions, the potential to double production (to ∼60 tonnes/ha.y), improve bioflocculation algal harvest, and enhance wastewater nutrient removal. Algae biofuels (e.g. biogas, ethanol, biodiesel and crude bio-oil), could be produced from the algae harvested from wastewater HRAPs, The wastewater treatment function would cover the capital and operation costs of algal production, with biofuel and recovered nutrient fertilizer being by-products. Greenhouse gas abatement results from both the production of the biofuels and the savings in energy consumption compared to electromechanical treatment processes. However, to achieve these benefits, further research is required, particularly the large-scale demonstration of wastewater treatment HRAP algal production and harvest.

  11. Mineral composition of basidiomes of Amanita species.

    PubMed

    Vetter, János

    2005-06-01

    Basidiomes of 43 samples of eight Amanita species were gathered from different habitats of Hungary. The mineral composition (22 elements) was analysed by the ICP method in three independent replications, and mineral compositions found as discussed and compared. The Amanita species analysed were very different in As-, Cd-, Cr-, Mo-, Mn-, Se- and mainly in V-content. Other elements (Al, B, Ba, Ca, Co, Cu, Fe, Mg, Na, Ni, Sr, Ti, Zn) occur in the basidiomes in balanced concentrations. The K and P contents have the lowest differences. Summarizing all the data (n = 43), the average mineral status of species of Amanita can be deduced. The lowest variability measured was for K and P, and the highest for chromium, nickel and vanadium. Specific, significant accumulation was found only for vanadium, due to the previously demonstrated occurrence of a binding molecule 'amavadine' in the basidiomes of A. muscaria. Remarkable Cd-levels were estimated in A. pantherina and A. muscaria (11.4 and 12.3 mg kg(-1) D.M., respectively). The higher contents of other elements (e.g. K, practically in all species; Se in A. strobiliformis) are analytical facts but, not accumulations. The mineral compositions of the ectomycorrhizal genus Amanita, of litter decomposing Agaricus and of wood decaying Trametes were compared. Some significant differences were found (AsAmanita < AsAgaricus; CdAmanita < CdAgaricus; CuAmanita < CuAgaricus; PAmanita KTrametes; PAmanita > PTrametes) but it seems that the mineral composition of the basidiomes is practically independent of the ectomycorrhizal habit. The specificities of the fungi-tree symbiotic interactions are known, and well documented (higher uptake and transport of certain elements first of all of P), however, the differences found in the mineral components are due to other factors (e.g. substrates, accumulating ability) and not to the mycorrhizal status.

  12. Consideration of species community composition in statistical ...

    EPA Pesticide Factsheets

    Diseases are increasing in marine ecosystems, and these increases have been attributed to a number of environmental factors including climate change, pollution, and overfishing. However, many studies pool disease prevalence into taxonomic groups, disregarding host species composition when comparing sites or assessing environmental impacts on patterns of disease presence. We used simulated data under a known environmental effect to assess the ability of standard statistical methods (binomial and linear regression, ANOVA) to detect a significant environmental effect on pooled disease prevalence with varying species abundance distributions and relative susceptibilities to disease. When one species was more susceptible to a disease and both species only partially overlapped in their distributions, models tended to produce a greater number of false positives (Type I error). Differences in disease risk between regions or along an environmental gradient tended to be underestimated, or even in the wrong direction, when highly susceptible taxa had reduced abundances in impacted sites, a situation likely to be common in nature. Including relative abundance as an additional variable in regressions improved model accuracy, but tended to be conservative, producing more false negatives (Type II error) when species abundance was strongly correlated with the environmental effect. Investigators should be cautious of underlying assumptions of species similarity in susceptib

  13. Interactions between macro-algal mats and invertebrates in the Ythan estuary, Aberdeenshire, Scotland

    NASA Astrophysics Data System (ADS)

    Raffaelli, D.

    2000-07-01

    Blooms of opportunistic green macro-algae are a common feature of coastal areas and their effects on mudflat invertebrates can be dramatic. On the Ythan estuary, Aberdeenshire, Scotland, we have carried out a number of manipulative field experiments designed to evaluate the effects on invertebrates of different species of macro-algae with contrasting ecologies, and the effects of invertebrates on the development of the blooms. Macro-algal mats were found to have dramatic nega- tive effects on the density of the amphipod Corophium volutator, with higher algal biomasses having greater impact. The mechanism for this interaction seems to be interference by the algal filaments with the feeding behaviour of the amphipod. In contrast, the polychaete Capitella spp. increases in abundance under macro-algal mats due to enrichment of the sediment with organic material. These two interactions are seen at all scales, in areas of less than 1 m2 to the scale of the entire estuary, irrespective of the species composition of the macro- algal mats. Bioturbation by Corophium and grazing by the snail Hydrobia ulvae had little effect on macro-algal biomass, but there were less algae when the polychaete Nereis diversicolor was present. The most significant interaction in this system is the pronounced negative impact of algal mats on the abundance of Corophium, probably the most important invertebrate species in the diets of the estuary's shorebirds, fish and epibenthic crustaceans.

  14. Seasonal variations in biomass and species composition of seaweeds along the northern coasts of Persian Gulf (Bushehr Province)

    NASA Astrophysics Data System (ADS)

    Dadolahi-Sohrab, A.; Garavand-Karimi, M.; Riahi, H.; Pashazanoosi, H.

    2012-02-01

    This study was carried out to evaluate the seasonal variations of seaweed biomass and species composition at six different sites along the coastal areas in Bushehr Province. Sampling depths varied among sites, from 0.3 to 2.0 m below mean sea level. A total of 37 (i.e., 10 Chlorophyta, 12 Phaeophyta and 15 Rhodophyta) seaweed species were collected. Studies were conducted for quantifying the seaweeds during four seasons from October 2008 until July 2009. During present research, Ulva intestinalis and Cladophora nitellopsis of green, Polycladia myrica, Sirophysalia trinodis and Sargassum angustifolium of brown and Gracilaria canaliculata and Hypnea cervicornis of red seaweeds showed highest biomass in coastal areas of Bushehr Province. The Cheney`s ratio of 2.1 indicated a temperate algal flora to this area. All sites exhibited more than 50% similarity of algal species, indicating a relatively homogenous algal distribution. Total biomass showed the highest value of 3280.7 ± 537.8 g dry wt m - 2 during summer and lowest value of 856.9 ± 92.0 g dry wt m - 2 during winter. During this study, the highest and lowest seaweed biomass were recorded on the site 2 (2473.7 ± 311.0 g dry wt m - 2) and site 5 (856.7 ± 96.8 g dry wt m - 2), respectively.

  15. Development and evaluation of a DNA microarray assay for the simultaneous detection of nine harmful algal species in ship ballast and seaport waters

    NASA Astrophysics Data System (ADS)

    Chen, Xianfeng; Zhou, Qianjin; Duan, Weijun; Zhou, Chengxu; Duan, Lijun; Zhang, Huili; Sun, Aili; Yan, Xiaojun; Chen, Jiong

    2016-01-01

    Rapid, high-throughput and reliable methods are urgently required to accurately detect and monitor harmful algae, which are responsible for algal blooms, such as red and green tides. In this study, we successfully developed a multiplex PCR-based DNA microarray method capable of detecting nine harmful algal species simultaneously, namely Alexandrium tamarense, Gyrodinium instriatum, Heterosigma akashiwo, Karenia mikimotoi, Prorocentrum donghaiense, Prorocentrum minimum, Ulva compressa, Ulva ohnoi and Ulva prolifera. This method achieved a limit of detection (LOD) of 0.5 ng of genomic DNA (orders of magnitude of the deci-nanogram range) in the tested algae cultures. Altogether, 230 field samples from ship ballast waters and seaport waters were used to evaluate the DNA microarray. The clinical sensitivity and specificity of the DNA microarray assay in detecting field samples were 96.4% and 90.9%, respectively, relative to conventional morphological methods. This indicated that this high-throughput, automatic, and specific method is well suited for the detection of algae in water samples.

  16. Structural Impacts on Thallus and Algal Cell Components of Two Lichen Species in Response to Low-Level Air Pollution in Pacific Northwest Forests

    NASA Astrophysics Data System (ADS)

    Ra, Hyung-Shim Y.; Rubin, Laura; Crang, Richard F. E.

    2004-04-01

    Lichens have long been regarded as bioindicators of air pollution, and structural studies typically have indicated negative impacts in highly polluted areas. In this research, Parmelia sulcata and Platismatia glauca were collected from one clean and two polluted sites in the Pacific Northwest forests of the United States to investigate the anatomical and ultrastructural responses of relatively resistant lichens to moderate air pollution. Light microscopy of polluted materials revealed only slight increases in the algal cell proportions of the thallus, and a decrease in the fungal cells of the medulla. Using transmission electron microscopy, increased lipid droplets in the cytoplasm and an increase in the cell wall thickness of the photobionts were found in the polluted lichens. These results were compared with physiological data in which the net carbon uptake did not show any significant differences; however, the total chlorophyll content was heightened in the polluted samples. The increased total chlorophyll content and the absence of any changes in the algal cell proportions of the polluted samples suggest that the photobionts possessed a higher chlorophyll content per unit volume of the photobiont at polluted sites. The results also indicate that lichens have altered their storage allocation in different cellular compartments. This may be a result of symbiotic readjustment(s) between the photobiont and the mycobiont. In comparison with the physiological results from these two species, these changes do not represent damaging effects by low-level air pollution.

  17. Cytoskeleton organisation during the infection of three brown algal species, Ectocarpus siliculosus, Ectocarpus crouaniorum and Pylaiella littoralis, by the intracellular marine oomycete Eurychasma dicksonii.

    PubMed

    Tsirigoti, A; Küpper, F C; Gachon, C M M; Katsaros, C

    2014-01-01

    Oomycete diseases in seaweeds are probably widespread and of significant ecological and economic impact, but overall still poorly understood. This study investigates the organisation of the cytoskeleton during infection of three brown algal species, Pylaiella littoralis, Ectocarpus siliculosus, and Ectocarpus crouaniorum, by the basal marine oomycete Eurychasma dicksonii. Immunofluorescence staining of tubulin revealed how the development of this intracellular biotrophic pathogen impacts on microtubule (MT) organisation of its algal host. The host MT cytoskeleton remains normal and organised by the centrosome until very late stages of the infection. Additionally, the organisation of the parasite's cytoskeleton was examined. During mitosis of the E. dicksonii nucleus the MT focal point (microtubule organisation centre, MTOC, putative centrosome) duplicates and each daughter MTOC migrates to opposite poles of the nucleus. This similarity in MT organisation between the host and pathogen reflects the relatively close phylogenetic relationship between oomycetes and brown algae. Moreover, actin labelling with rhodamine-phalloidin in E. dicksonii revealed typical images of actin dots connected by fine actin filament bundles in the cortical cytoplasm. The functional and phylogenetic implications of our observations are discussed.

  18. Nutrient sources and composition of recent algal blooms and eutrophication in the northern Jiulong River, Southeast China.

    PubMed

    Li, Ying; Cao, Wenzhi; Su, Caixia; Hong, Huasheng

    2011-01-01

    The natural process of eutrophication is accelerated by human activities worldwide that interrupt nutrient biogeochemical cycles. Three algal bloom events have been monitored in the northern tributary of the Jiulong River since 2009. The inflection points in a robust locally-weighted regression analysis (LOESS) of the relationship between TN and TP concentrations in the river water, and a TN:TP comparison with nutrient source loadings, suggested that both external loading and internal nutrient cycling contributed to these algal blooms. Nutrient release from the sediments may have played an important role in regulating the nutrients in the overlying water column. In particular, excessive nutrient inputs from various sources and ubiquitous river damming caused further accumulation of the nutrient loading. In-situ autochthonous primary production was enhanced in this relatively stable "river" to "lake" water body. Thus, attention must be paid to the effects of river damming and the consequent internal nutrient release.

  19. A comparison of the influences of urbanization in contrasting environmental settings on stream benthic algal assemblages

    USGS Publications Warehouse

    Potapova, M.; Coles, J.F.; Giddings, E.M.P.; Zappia, H.

    2005-01-01

    Patterns of stream benthic algal assemblages along urbanization gradients were investigated in three metropolitan areas-Boston (BOS), Massachusetts; Birmingham (BIR), Alabama; and Salt Lake City (SLC), Utah. An index of urban intensity derived from socioeconomic, infrastructure, and land-use characteristics was used as a measure of urbanization. Of the various attributes of the algal assemblages, species composition changed along gradients of urban intensity in a more consistent manner than biomass or diversity. In urban streams, the relative abundance of pollution-tolerant species was often higher than in less affected streams. Shifts in assemblage composition were associated primarily with increased levels of conductivity, nutrients, and alterations in physical habitat. Water mineralization and nutrients were the most important determinants of assemblage composition in the BOS and SLC study areas; flow regime and grazers were key factors in the BIR study area. Species composition of algal assemblages differed significantly among geographic regions, and no particular algal taxa were found to be universal indicators of urbanization. Patterns in algal biomass and diversity along urban gradients varied among study areas, depending on local environmental conditions and habitat alteration. Biomass and diversity increased with urbanization in the BOS area, apparently because of increased nutrients, light, and flow stability in urban streams, which often are regulated by dams. Biomass and diversity decreased with urbanization in the BIR study area because of intensive fish grazing and less stable flow regime. In the SLC study area, correlations between algal biomass, diversity, and urban intensity were positive but weak. Thus, algal responses to urbanization differed considerably among the three study areas. We concluded that the wide range of responses of benthic algae to urbanization implied that tools for stream bioassessment must be region specific. ?? 2005 by the

  20. Preparation of a new-style composite containing a key bioflocculant produced by Pseudomonas aeruginosa ZJU1 and its flocculating effect on harmful algal blooms.

    PubMed

    Sun, Peng-Fei; Lin, Hui; Wang, Guan; Lu, Li-Ling; Zhao, Yu-Hua

    2015-03-02

    A novel composite consisting of clay, bioflocculant, and inorganic flocculant was designed, and its flocculating effect on harmful algal blooms (HABs) was studied in this study. The extracellular polymeric substances (EPS), produced with a yield of 3.58±0.11 g/L by a newly isolated Pseudomonas aeruginosa ZJU1, was indicated to be a key component in the composite. The components and functional groups of the EPS were analyzed, and it showed that polysaccharides, proteins, and nucleic acids are the main components; polar functional groups in the EPS are responsible for its flocculating activity. The novel composite was optimized by the response surface methodology and after optimization, the optical components and contents of the composite were Kaolin 2.38 g/L, CaCl2 0.28 g/L, KAl(SO4)2 0.09 g/L, and EPS 1.75 mg/L. The flocculating rates of the composite were tested, and it could rapidly reach 100±0.13% within 2 min when OD680 of Microcystis aeruginosa was 0.1; it could reach 100±0.08% within 5 min for OD680 of M. aeruginosa in HABs up to 1.0. These results suggest that the novel composite will be a highly efficient material for the treatment of HABs caused by M. aeruginosa.

  1. Phytochip: development of a DNA-microarray for rapid and accurate identification of Pseudo-nitzschia spp and other harmful algal species.

    PubMed

    Noyer, Charlotte; Abot, Anne; Trouilh, Lidwine; Leberre, Véronique Anton; Dreanno, Catherine

    2015-05-01

    Detection of harmful algal blooms has become a challenging concern because of the direct impacts on public health and economy. The identification of toxic dinoflagellates and diatoms in monitoring programs requires an extensive taxonomic expertise and is time consuming. Advances in molecular biology have allowed the development of new approaches, more rapid, accurate and cost-effective for detecting these microorganisms. In this context, we developed a new DNA microarray (called, Phytochip) for the simultaneous detection of multiple HAB species with a particular emphasis on Pseudo-nitzschia species. Oligonucleotide probes were designed along the rRNA operon. After DNA extraction, the target rDNA genes were amplified and labeled using an asymmetric PCR; then, the amplicons were hybridized to the oligonucleotide probes present on the chips. The total assay from seawater sampling to data acquisition can be performed within a working day. Specificity and sensitivity were assessed by using monoclonal cultures, mixtures of species and field samples spiked with a known amount of cultured cells. The Phytochip with its 81 validated oligonucleotide probes was able to detect 12 species of Pseudo-nitzschia and 11 species of dinoflagellates among which were 3 species of Karenia and 3 species of Alexandrium. The Phytochip was applied to environmental samples already characterized by light microscopy and cloned into DNA libraries. The hybridizations on the Phytochip were in good agreement with the sequences retrieved from the clone libraries and the microscopic observations. The Phytochip enables a reliable multiplex detection of phytoplankton and can assist a water quality monitoring program as well as more general ecological research.

  2. Streptomyces alboflavus RPS and Its Novel and High Algicidal Activity against Harmful Algal Bloom Species Phaeocystis globosa

    PubMed Central

    Wang, Haitao; Li, Dong; Yang, Xujun; An, Xinli; Zheng, Xiaowei; Tian, Yun; Zheng, Wei; Zheng, Tianling

    2014-01-01

    Phaeocystis globosa blooms have frequently occurred along coastal waters and exerted serious impacts on ecological environments by releasing toxic hemolytic substances, forming nuisance foam, and causing oxygen depletion. An actinomycete strain RPS with high algicidal activity against P. globosa was isolated and identified as Streptomyces alboflavus, based on morphology, physiological and biochemical characteristics, and 16S rDNA sequence analysis. RPS lysed 95% of P. globosa within 48 h by releasing an extracellular active substance into the growth medium. The activity of RPS supernatant was sensitive to temperature at and above 50°C and insensitive to pH from 3 to 11. The molecular weight of the active substance was between 100 Da and 1000 Da, and approximately 90% of it was extracted by ethyl acetate. It was presumed that the active component efficiently inhibited the movement of P. globosa, caused the flagella to fall off the algae, and finally lysed the algal cells. RPS showed a wide target range against harmful algae. S. alboflavus RPS with high algicidal activity and such novel features of temperature and pH sensitivity, low molecular weight, algicidal process, and target range possesses great potential in the biological control of P. globosa blooms. PMID:24675867

  3. Retrospective analysis of diversity and species composition of marine macroalgae of Hainan Island (China)

    NASA Astrophysics Data System (ADS)

    Titlyanov, Eduard A.; Titlyanova, Tamara V.; Xia, Bangmei; Bartsch, Inka

    2016-09-01

    Retrospective analysis of diversity and species composition of marine macroalgae of Hainan Island in the period 1933-1992 is presented in this paper. There are two extensive sample collection periods of benthic macroalgae: the early collection (EC) covers a period between the early 1930s and the 1980s before considerable urbanization and reef degradation took place and a late collection (LC) was performed in 1990/1992 during a phase of rapid urbanization. Analysis of data also including an earlier published inventory of green algae covering the same collection sites (Titlyanov et al. 2011a) revealed that the marine flora of the island comprises 426 taxa in total, with 59% red algae, 18% brown algae and 23% green algae. In total 59 species of red algae, 11 species of brown algae and 37 species of green algae sampled during the LC are new records for Hainan Island. Considerable floristic changes between EC and LC became evident. In the LC there were significantly more filamentous, tubular or fine blade-like, and often epiphytic, green and red algae with a high surface-to-volume ratio. Additionally a reduction of green, brown and red algal species with larger fleshy or foliose thalli and a low surface-to-volume ratio was observed. It is assumed that the changes reflect the degradation of the coral reef ecosystem around Hainan, which was damaged by human activities especially in the 1950s-1970s.

  4. Stressor-Response Models Relating Nutrient Enrichment to Algal Communities in Pacific Northwest Streams and Rivers

    NASA Astrophysics Data System (ADS)

    Sobota, D. J.; Hubler, S.; Paul, M. J.; Labiosa, R.

    2015-12-01

    Excessive algal growth in streams and rivers from nutrient enrichment can cause costly human health and environmental problems. As part of the US Environmental Protection Agency's Nutrient Scientific Technical Exchange Partnership and Support (N-STEPS) program, we have been developing stressor-response (S-R) models relating nutrients to attached algal (periphyton) communities to help prioritize monitoring for water quality impairments in Oregon (Pacific Northwest, USA) streams and rivers. Existing data from the state and neighboring states were compiled and standardized from the Oregon Department of Environmental Quality, US Environmental Protection Agency, and the US Geological Survey. To develop S-R models, algal community and biomass metrics were compared with nitrogen (N) and phosphorus (P) concentration data, including total, dissolved, and inorganic forms of these nutrients. In total, 928 paired algal-nutrient samples were compiled from the 8 Level-III Ecoregions occurring in Oregon. Relationships between algal biomass metrics and nutrient concentrations were weak, with only ash-free dry mass and standing stock of chlorophyll a showing slight positive relationships across gradients of total N and soluble reactive P concentrations, respectively. In contrast, metrics describing algal community composition, including percent diatoms and abundance of nutrient-sensitive species, showed very strong nonlinear relationships with total N or P concentrations. This suggests that data describing algal community composition can help identify specific nutrient stressors across environmentally-diverse streams and rivers in the Pacific Northwest. Future analyses will examine if nutrient-algal S-R models vary across different hydrological, physiographical, and ecological settings in the region.

  5. Seasonality in the distribution of dinoflagellates with special reference to harmful algal species in tropical coastal environment, Bay of Bengal.

    PubMed

    Sahu, Gouri; Mohanty, A K; Samantara, M K; Satpathy, K K

    2014-10-01

    A study was carried out in the coastal waters of Kalpakkam, southeast coast of India, to find out the seasonal variation in dinoflagellate community structure. Samples were collected for a period of 4 years during 2006-2010. During the study 69 species of dinoflagellates were encountered among which Ceratium furca and Prorocentrum micans were most common during all the seasons. Genus Ceratium was found to be the most diverse one with 23 species which was followed by genus Protoperidinium with 16 species. Of 69 species, 27 species were considered as dominant based on their abundance during pre-monsoon (PRM), monsoon (MON) and post-monsoon (POM) periods. Relatively high density and diversity of dinoflagellates were encountered during the PRM period as compared to the MON and POM periods. Abundance pattern of dinoflagellates for three seasons showed the following trend: PRM > POM > MON. Salinity showed a positive correlation with dinoflagellate community showing its importance in dinoflagellate growth and sustenance. Ammonia and phosphate developed negative correlation with dinoflagellate density indicating the utilization of these nutrients by the dinoflagellate community. The presence of three dinoflagellate associations, broadly representing the three seasons experienced at this location, was evident from the cluster analysis. The study revealed presence of 19 relatively abundant toxic/red tide forming dinoflagellate species in the coastal waters of Kalpakkam.

  6. Characterisation of algal organic matter produced by bloom-forming marine and freshwater algae.

    PubMed

    Villacorte, L O; Ekowati, Y; Neu, T R; Kleijn, J M; Winters, H; Amy, G; Schippers, J C; Kennedy, M D

    2015-04-15

    Algal blooms can seriously affect the operation of water treatment processes including low pressure (micro- and ultra-filtration) and high pressure (nanofiltration and reverse osmosis) membranes mainly due to accumulation of algal-derived organic matter (AOM). In this study, the different components of AOM extracted from three common species of bloom-forming algae (Alexandrium tamarense, Chaetoceros affinis and Microcystis sp.) were characterised employing various analytical techniques, such as liquid chromatography - organic carbon detection, fluorescence spectroscopy, fourier transform infrared spectroscopy, alcian blue staining and lectin staining coupled with laser scanning microscopy to indentify its composition and force measurement using atomic force microscopy to measure its stickiness. Batch culture monitoring of the three algal species illustrated varying characteristics in terms of growth pattern, cell concentration and AOM release. The AOM produced by the three algal species comprised mainly biopolymers (e.g., polysaccharides and proteins) but some refractory compounds (e.g., humic-like substances) and other low molecular weight acid and neutral compounds were also found. Biopolymers containing fucose and sulphated functional groups were found in all AOM samples while the presence of other functional groups varied between different species. A large majority (>80%) of the acidic polysaccharide components (in terms of transparent exopolymer particles) were found in the colloidal size range (<0.4 μm). The relative stickiness of AOM substantially varied between algal species and that the cohesion between AOM-coated surfaces was much stronger than the adhesion of AOM on AOM-free surfaces. Overall, the composition as well as the physico-chemical characteristics (e.g., stickiness) of AOM will likely dictate the severity of fouling in membrane systems during algal blooms.

  7. Harmful Algal Bloom Webinar

    EPA Pesticide Factsheets

    The problem is complex. Excessive nitrogen and phosphorous levels can cause harmful algal blooms. Different algal/cyanobacteria strains bloom under different conditions. Different strains produce different toxins at varying amounts.

  8. Long-term declines in an intertidal foundation species parallel shifts in community composition.

    PubMed

    Sorte, Cascade J B; Davidson, Victoria E; Franklin, Marcus C; Benes, Kylla M; Doellman, Meredith M; Etter, Ron J; Hannigan, Robyn E; Lubchenco, Jane; Menge, Bruce A

    2017-01-01

    The earth is in the midst of a biodiversity crisis, and projections indicate continuing and accelerating rates of global changes. Future alterations in communities and ecosystems may be precipitated by changes in the abundance of strongly interacting species, whose disappearance can lead to profound changes in abundance of other species, including an increase in extinction rate for some. Nearshore coastal communities are often dependent on the habitat and food resources provided by foundational plant (e.g., kelp) and animal (e.g., shellfish) species. We quantified changes in the abundance of the blue mussel (Mytilus edulis), a foundation species known to influence diversity and productivity of intertidal habitats, over the past 40 years in the Gulf of Maine, USA, one of the fastest warming regions in the global ocean. Using consistent survey methods, we compared contemporary population sizes to historical data from sites spanning >400 km. The results of these comparisons showed that blue mussels have declined in the Gulf of Maine by >60% (range: 29-100%) at the site level since the earliest benchmarks in the 1970s. At the same time as mussels declined, community composition shifted: at the four sites with historical community data, the sessile community became increasingly algal dominated. Contemporary (2013-2014) surveys across 20 sites showed that sessile species richness was positively correlated to mussel abundance in mid to high intertidal zones. These results suggest that declines in a critical foundation species may have already impacted the intertidal community. To inform future conservation efforts, we provide a database of historical and contemporary baselines of mussel population abundance and dynamics in the Gulf of Maine. Our results underscore the importance of anticipating not only changes in diversity but also changes in the abundance and identity of component species, as strong interactors like foundation species have the potential to drive

  9. Effects of solar ultraviolet radiation on tropical algal communities

    SciTech Connect

    Santas, R.

    1989-01-01

    This study assessed some of the effects of solar ultraviolet (UV) radiation ion coral reef algal assemblages. The first part of the investigation was carried out under controlled laboratory conditions in the coral reef microcosm at the National Museum of Natural History in Washington, D.C., while a field counterpart was completed at the Smithsonian Institution's marine station on Grand Turk, Turks and Caicos Islands, in the eastern Caribbean. The study attempted to separate the effects of UV-A from those of UV-B. In the laboratory, algal turf assemblages exposed to simulated solar UV radiation produced 55.1% less biomass than assemblages that were not exposed to UV. Assemblages not exposed to UV were dominated by Ectocarpus rhodochondroides, whereas in the assemblage developing under high UV radiation, Enteromorpha prolifera and eventually Schizothrix calcicola dominated. Lower UV-B irradiances caused a proportional reduction in biomass production and had less pronounced effects on species composition. UV-A did not have any significant effects on either algal turf productivity or community structure. In the field, assemblages exposed to naturally occurring solar UV supported a biomass 40% lower than that of assemblages protected from UV-B exposure. Once again, UV-A did not inhibit algal turf productivity.

  10. Composition of cardiolipin molecular species in Escherichia coli.

    PubMed Central

    Yokota, K; Kanamoto, R; Kito, M

    1980-01-01

    The composition of the molecular species of acidic phospholipids in Escherichia coli B during the late exponential growth phase at 37 degrees C was determined. Two phosphatidyl groups of cardiolipin, the 3-(3-sn-phosphatidyl) and 1-(3-sn-phosphatidyl) moieties of cardiolipin, were isolated by limited hydrolysis with phospholipase C. No significant difference in the composition of the molecular species was found between the 3-(3-sn-phosphatidyl) and 1-(3-sn-phosphatidyl) moieties. On the other hand, the composition of the molecular species of phosphatidylglycerol was different from that of cardiolipin. Phosphatidylglycerol contained more of the 1-palmitoyl 2-cis-9,10-methylenehexadecanoyl and 1-palmitoyl 2-cis-11,12-methyleneoctadecanoyl species than did cardiolipin. The difference in the composition of the molecular species between cardiolipin and phosphatidylglycerol may depend on the difference in the turnover rates of both phospholipids. PMID:6988400

  11. Photosynthetic plasticity in the green algal species Klebsormidium flaccidum (Streptophyta) from a terrestrial and a freshwater habitat.

    PubMed

    Karsten, Ulf; Herburger, Klaus; Holzinger, Andreas

    2017-01-01

    The genus Klebsormidium (Klebsormidiales, Streptophyta) has a worldwide distribution in terrestrial habitats. In the present study, we focused on two strains of Klebsormidium flaccidum, the type species of the genus. The isolates used in this study were isolated from a soil and freshwater habitat. Photosynthetic activity was evaluated under different controlled gradients of light, temperature and desiccation. The data clearly indicate that both isolates of K. flaccidum exhibit conspicuously different photosynthetic response patterns to photon fluence rate, temperature and desiccation, and thus can be related to their different habitats. Although both strains represent the same species, their physiological response patterns to abiotic gradients, as well as their morphology differed to some extent, indicating high phenotypic plasticity of K. flaccidum, which was maintained even after long-term culture and thus can be explained by the formation of physiologically distinct ecotypes.

  12. Photosynthetic plasticity in the green algal species Klebsormidium flaccidum (Streptophyta) from a terrestrial and a freshwater habitat

    PubMed Central

    Karsten, Ulf; Herburger, Klaus; Holzinger, Andreas

    2016-01-01

    The genus Klebsormidium (Klebsormidiales, Streptophyta) has a worldwide distribution in terrestrial habitats. In the present study, we focused on two strains of Klebsormidium flaccidum, the type species of the genus. The isolates used in this study were isolated from a soil and freshwater habitat. Photosynthetic activity was evaluated under different controlled gradients of light, temperature and desiccation. The data clearly indicate that both isolates of K. flaccidum exhibit conspicuously different photosynthetic response patterns to photon fluence rate, temperature and desiccation, and thus can be related to their different habitats. Although both strains represent the same species, their physiological response patterns to abiotic gradients, as well as their morphology differed to some extent, indicating high phenotypic plasticity of K. flaccidum, which was maintained even after long-term culture and thus can be explained by the formation of physiologically distinct ecotypes. PMID:28057961

  13. Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg.

    PubMed

    Carrias, J-F; Céréghino, R; Brouard, O; Pélozuelo, L; Dejean, A; Couté, A; Corbara, B; Leroy, C

    2014-09-01

    The tank bromeliads Aechmea aquilega (Salisb.) and Catopsis berteroniana (Schultes f.) coexist on a sun-exposed Neotropical inselberg in French Guiana, where they permit conspicuous freshwater pools to form that differ in size, complexity and detritus content. We sampled the algal communities (both eukaryotic and cyanobacterial taxa, including colourless forms) inhabiting either A. aquilega (n = 31) or C. berteroniana (n = 30) and examined differences in community composition and biomass patterns in relation to several biotic and abiotic variables. Chlorella sp. and Bumilleriopsis sp. were the most common taxa and dominated the algal biomass in A. aquilega and C. berteroniana, respectively. Using a redundancy analysis, we found that water volume, habitat complexity and the density of phagotrophic protozoa and collector-gatherer invertebrates were the main factors explaining the distribution of the algal taxa among the samples. Hierarchical clustering procedures based on abundance and presence/absence data clearly segregated the samples according to bromeliad species, revealing that the algal communities in the smaller bromeliad species were not a subset of the communities found in the larger bromeliad species. We conclude that, even though two coexisting tank bromeliad populations create adjacent aquatic habitats, each population hosts a distinct algal community. Hence, bromeliad diversity is thought to promote the local diversity of freshwater algae in the Neotropics.

  14. Strong fungal specificity and selectivity for algal symbionts in Florida scrub Cladonia lichens.

    PubMed

    Yahr, Rebecca; Vilgalys, Rytas; Depriest, Paula T

    2004-11-01

    Symbiosis is a major theme in the history of life and can be an important force driving evolution. However, across symbioses, it is difficult to tease apart the mechanisms that structure the interactions among potential partners. We used genetic similarity and frequency-based methods to qualitatively and quantitatively examine the patterns of association among several co-occurring Cladonia lichen fungi and their algal photobionts in six disjunct Florida scrub sites. The patterns of association were described by the degree of specificity, i.e. the phylogenetic range of associated partners, and of selectivity, i.e. the frequency of association among partners. Six fungal species associated with only one algal internal transcribed spacer clade, with the remaining two fungi being associated with two algal clades. In all cases, the fungi associated in unequal frequencies with the observed algal photobiont genotypes within those clades--suggesting that both specificity and selectivity were higher than expected. Fungal species can be grouped into three significantly different specificity classes: photobiont specialists, intermediates and generalists. In contrast to the pronounced specificity for photobionts among fungal species, the different Florida scrub sites do not harbour distinct photobiont pools, and differential photobiont availability cannot explain the patterning of lichen associations at this spatial scale. Therefore, we conclude that fungal specificity and selectivity for algal photobionts are major factors in determining the local composition of symbiotic partnerships.

  15. Efficacy of algal metrics for assessing nutrient and organic enrichment in flowing waters

    USGS Publications Warehouse

    Porter, S.D.; Mueller, D.K.; Spahr, N.E.; Munn, M.D.; Dubrovsky, N.M.

    2008-01-01

    4. Although algal species tolerance to nutrient and organic enrichment is well documented, additional taxonomic and autecological research on sensitive, endemic algal species would further enhance water-quality assessments.

  16. Eukaryotic algal phytochromes span the visible spectrum

    PubMed Central

    Rockwell, Nathan C.; Duanmu, Deqiang; Martin, Shelley S.; Bachy, Charles; Price, Dana C.; Bhattacharya, Debashish; Worden, Alexandra Z.; Lagarias, J. Clark

    2014-01-01

    Plant phytochromes are photoswitchable red/far-red photoreceptors that allow competition with neighboring plants for photosynthetically active red light. In aquatic environments, red and far-red light are rapidly attenuated with depth; therefore, photosynthetic species must use shorter wavelengths of light. Nevertheless, phytochrome-related proteins are found in recently sequenced genomes of many eukaryotic algae from aquatic environments. We examined the photosensory properties of seven phytochromes from diverse algae: four prasinophyte (green algal) species, the heterokont (brown algal) Ectocarpus siliculosus, and two glaucophyte species. We demonstrate that algal phytochromes are not limited to red and far-red responses. Instead, different algal phytochromes can sense orange, green, and even blue light. Characterization of these previously undescribed photosensors using CD spectroscopy supports a structurally heterogeneous chromophore in the far-red–absorbing photostate. Our study thus demonstrates that extensive spectral tuning of phytochromes has evolved in phylogenetically distinct lineages of aquatic photosynthetic eukaryotes. PMID:24567382

  17. [Generalized behavior study on the growth dynamics for dominant algae species forming algal bloom in the three Gorges reservoir region].

    PubMed

    Liu, Xin-an; Feng, Li; Jia, Charles Q

    2008-08-01

    From the blue-green algae species a representative algae, namely, ChloreUlla vulgaris (CV)to belong to Chlorophyta is selected as one of algae species studied in order to investigate the effect of TN, TP on the growth behavior of CV with the Monod equation, and calculate the semi-saturation constants of CV to TP(K(SP)) and TN(K(SN)). K(SN) > K(SP) showed that the effect of TP on growth of CV is obvious significant than that of TN. The growth rate of Chlorella vulgaris is very sensitive to the concentration of phosphorus: Compares with the blank value, the special growth rate (mu) has been enhanced under the low concentration of 0.002 mg x L(-1), then the concentration turned to 0.2 mg x L(-1) the special growth rate (mu) has been enhanced obviously; but there was hardly any change under the concentration of nitrogen from 0.000 to 0.050 mg x L(-1). At the same time, in order to reveal whether there was a generalized character associating the growth dynamics of CV with that of dominant blue-green algae species, the dynamic models including CV constructed from our experimental data, dominant blue-green algae and sea algae from literature information have been compared and analyzed systemically, and the results showed that their growth dynamics behavior and ecological characteristic were extremely similar and common. According to extrapolation of the intercommunity of all growth dynamics we could describe and show availably there is a common behavior to the growth of dominant blue-green algae in the Three Gorges reservoir region. This conclusion would have some important theoretical and applied significance.

  18. Aerial extent, composition, bio-optics and biogeochemistry of a massive under-ice algal bloom in the Arctic

    NASA Astrophysics Data System (ADS)

    Balch, W. M.; Bowler, B. C.; Lubelczyk, L. C.; Stevens, M. W.

    2014-07-01

    It has been long thought that coccolithophores are a minor component of the phytoplankton assemblage in Arctic waters, with diatoms typically being more dominant. Little is known about how the phytoplankton communities will change, however, as the Arctic warms. We participated in the 2011 Impacts of Climate on EcoSystems and Chemistry of the Arctic Pacific Environment (ICESCAPE) cruise to the western Arctic, performing a combination of discrete measurements (microscopy, calcification, particulate inorganic carbon (PIC), particulate organic carbon (POC), biogenic silica (BSi)) plus continuous surface bio-optical measurements (absorption, scattering, backscattering and acid-labile backscattering; the latter specific for coccolithophores). Here, we report bio-optical and coccolithophore observations from the massive under-ice algal bloom originally described in Arrigo et al. (2012). The most intense portions of the bloom were centered in cold Winter Water and there was evidence for nitrate drawdown in the top 10-20 m with strong penetration of silicate rich water into the surface waters. Surface chlorophyll a and particulate absorption at 440 nm approached 30 μg L-1 and 1.0 m-1, respectively. Particulate absorption of detritus (ap at 412 nm) was highly correlated to ap at 440 nm associated with chlorophyll a and slopes of the absorption spectrum showed that both dissolved and particulate absorption at 412 nm exceeded that at 440 nm, with slopes, Sg, of 0.01 nm-1. Colored dissolved organic matter fluorescence (FDOM) was high in the bloom but the relative fluorescence yields were low, characteristic of phytoplankton-produced FDOM (as opposed to terrestrially-produced FDOM). Coccolithophore backscattering was elevated in the under-ice bloom, but it only accounted for 10% of the total particle backscattering, relatively low compared to typical subpolar waters further to the south. Total particle scattering was significantly elevated in the under-ice bloom (values of

  19. Interannual variability in species composition explained as seasonally entrained chaos.

    PubMed

    Dakos, Vasilis; Benincà, Elisa; van Nes, Egbert H; Philippart, Catharina J M; Scheffer, Marten; Huisman, Jef

    2009-08-22

    The species composition of plankton, insect and annual plant communities may vary markedly from year to year. Such interannual variability is usually thought to be driven by year-to-year variation in weather conditions. Here we examine an alternative explanation. We studied the effects of regular seasonal forcing on a multi-species predator-prey model consisting of phytoplankton and zooplankton species. The model predicts that interannual variability in species composition can easily arise without interannual variability in external conditions. Seasonal forcing increased the probability of chaos in our model communities, but squeezed these irregular species dynamics within the seasonal cycle. As a result, the population dynamics had a peculiar character. Consistent with long-term time series of natural plankton communities, seasonal variation led to a distinct seasonal succession of species, yet the species composition varied from year to year in an irregular fashion. Our results suggest that interannual variability in species composition is an intrinsic property of multi-species communities in seasonal environments.

  20. CHARACTERIZATION OF 17 NEW MICROSATELLITE MARKERS FOR THE DINOFLAGELLATE ALEXANDRIUM FUNDYENSE (DINOPHYCEAE), A HARMFUL ALGAL BLOOM SPECIES

    PubMed Central

    Sehein, Taylor; Richlen, Mindy L.; Nagai, Satoshi; Yasuike, Motoshige; Nakamura, Yoji; Anderson, Donald M.

    2016-01-01

    Alexandrium fundyense is the toxic marine dinoflagellate responsible for “red tide” events in temperate and sub-arctic waters worldwide. In the Gulf of Maine (GOM) and Bay of Fundy in the Northwest Atlantic, blooms of A. fundyense recur annually, and are associated with major health and ecosystem impacts. In this region, microsatellite markers have been used to investigate genetic structure and gene flow; however, the loci currently available for this species were isolated from populations from Japan and the North Sea, and only a subset are suitable for the analysis of A. fundyense populations in the Northwest Atlantic. To facilitate future studies of A. fundyense blooms, both in this region and globally, we isolated and characterized 17 polymorphic microsatellite loci from 31 isolates collected from the GOM and from the Nauset Marsh System, an estuary on Cape Cod, MA, USA. These loci yielded between two and 15 alleles per locus, with an average of 7.1. Gene diversities ranged from 0.297 to 0.952. We then analyzed these same 31 isolates using previously published markers for comparison. We determined the new markers are sufficiently variable and better suited for the investigation of genetic structure, bloom dynamics, and diversity in the Northwest Atlantic. PMID:27274617

  1. Transformation of algal turf by echinoids and scarid fishes on French Polynesian coral reefs

    NASA Astrophysics Data System (ADS)

    Harmelin-Vivien, Mireille L.; Peyrot-Clausade, Mireille; Romano, Jean-Claude

    1992-04-01

    The respective roles of regular echinoids and scarid fishes in the transformation of turf algae, the main food resource for reef herbivores, were investigated on French Polynesian coral reefs. The role of one species of parrotfish ( Scarus sordidus) was compared with that of four species of echinoids. The degree and ways of degradation of the algal matter were determined by the organic matter percentage, the composition of the sugar fraction, and the concentration and composition of chlorophylltype pigments as assayed by HPLC analysis. Chemical analyses were performed on anterior and posterior intestines for scarids, intestinal contents and faeces for echinoids, and on fresh algal turf as a control of initial food quality. A decrease in mean percentage of organic matter in gut content was observed from intestine (9.7%) to faeces (7%) in sea urchins, but not in parrotfishes. The total sugar fraction decreased from fresh algal turf (32% of total organic matter) to echinoid (28%) to scarid (18%) gut contents. The ratio of insoluble to soluble sugars (I/S ratios) was higher in echinoids (2.6) than in scarid gut contents (1.0). A decrease in the total pigment concentration was measured from fresh algal turf to echinoid and it was found to be even lower in scarid gut contents. Chromatograms showed that the composition of chlorophyll-type pigments in scarid intestines was very similar to fresh algal turf, with a dominance of native forms, mainly chlorophyll a and b. On the contrary, degraded pigment forms dominated in echinoids. The main degraded products were pheophorbides in sea urchins, and chlorophyllides in parrotfishes. These results provided evidence for differentiation in digestive processes occurring in the two types of grazers. Echinoids released higher degraded algal material than did scarids. Thus, these two types of grazers play different roles in the recycling of organic matter on coral reefs.

  2. Sustainable Algal Energy Production and Environmental Remediation

    SciTech Connect

    Cooke, William E.

    2012-07-14

    Overall, our results confirm that wild algal species sequester a wide range of organic and metal contaminants and excess nutrients (PAHs, trace metals, and nutrients) from natural waters, and suggest parameters that could be useful in predicting uptake rates for algae growing on an algal floway or other algal growth systems in the environment or in industrial processes. The implication for various fuel production processes differ with the detailed unit operations involved, and these results will be of use in the developing of scaling experiments for various types of engineering process designs.

  3. Influence of light, nutrients, and temperature on the toxicity of atrazine to the algal species Raphidocelis subcapitata: Implications for the risk assessment of herbicides.

    PubMed

    Baxter, Leilan; Brain, Richard A; Lissemore, Linda; Solomon, Keith R; Hanson, Mark L; Prosser, Ryan S

    2016-10-01

    The acute toxicity of herbicides to algae is commonly assessed under conditions (e.g., light intensity, water temperature, concentration of nutrients, pH) prescribed by standard test protocols. However, the observed toxicity may vary with changes in one or more of these parameters. This study examined variation in toxicity of the herbicide atrazine to a representative green algal species Raphidocelis subcapitata (formerly Pseudokirchneriella subcapitata) with changes in light intensity, water temperature, concentrations of nutrients or combinations of these three parameters. Conditions were chosen that could be representative of the intensive corn growing Midwestern region of the United States of America where atrazine is used extensively. Varying light intensity (4-58µmol/m(2)s) resulted in no observable trend in 96-h EC50 values for growth rate. EC50 values for PSII yield generally increased with decreasing light intensity but not significantly in all cases. The 96-h EC50 values for growth rate decreased with decreases in temperature (20-5°C) from standard conditions (25°C), but EC50 values for PSII yield at lower temperatures were not significantly different from standard conditions. Finally, there was no clear trend in 96-h EC50 values for both endpoints with increases in nitrogen (4.1-20mg/L) and phosphorus (0.24-1.2mg/L). The 96-h EC50 values for both endpoints under combinations of conditions mimicking aquatic systems in the Midwestern U.S. were not significantly different from EC50 values generated under standard test conditions. This combination of decreased light intensity and temperature and increased nutrients relative to standard conditions does not appear to significantly affect the observed toxicity of atrazine to R. subcapitata. For atrazine specifically, and for perhaps other herbicides, this means current laboratory protocols are useful for extrapolating to effects on algae under realistic environmental conditions.

  4. Chemical composition of various Ephedra species

    PubMed Central

    Ibragic, Saida; Sofić, Emin

    2015-01-01

    The medicinal significance of Ephedra is based on the sympathomimetic properties of ephedrine (E) alkaloids. Pharmacological effects depend on the phytocomposition of individual Ephedra species. The aim of this study was to measure the total alkaloids content (TAC), total phenolics content (TPC), and total flavonoids content (TFC) and determine their relationship in dry herb of Ephedra major, Ephedra distachya subsp. helvetica, Ephedra monosperma, Ephedra fragilis, Ephedra foeminea, Ephedra alata, Ephedra altissima and Ephedra foliata. Nowadays, medicinal use of Ephedrae herba is limited, but the abuse of its psychostimulants is rising. In this study, TAC, TPC and TFC were determined using spectrophotometric methods. For the first time, ultra-performance liquid chromatography with ultraviolet detection (UPLC-UV) was used for separation and quantification of E-type alkaloids of various Ephedra species. The highest TPC and TFC were found in E. alata (53.3 ± 0.1 mg Gallic acid equivalents/g dry weight, 2.8 mg quercetin equivalents/g dry weight, respectively). The total content of E and pseudoephedrine determined by UPLC-UV varied between 20.8 mg/g dry weight (E. distachya subsp. helvetica) and 34.7 mg/g dry weight (E. monosperma). The variable content and ratio between secondary metabolites determined in different Ephedra species reflects their metabolic activities. Utilization of UPLC-UV unveiled that this technique is sensitive, selective, and useful for separation and quantification of different alkaloids in complex biological matrixes. The limit of detection was 5 ng. Application of UPLC-UV can be recommended in quick analyses of E-type alkaloids in forensic medicine and quality control of pharmaceutical preparations. PMID:26295290

  5. Estimating Forest Species Composition Using a Multi-Sensor Approach

    NASA Astrophysics Data System (ADS)

    Wolter, P. T.

    2009-12-01

    The magnitude, duration, and frequency of forest disturbance caused by the spruce budworm and forest tent caterpillar has increased over the last century due to a shift in forest species composition linked to historical fire suppression, forest management, and pesticide application that has fostered the increase in dominance of host tree species. Modeling approaches are currently being used to understand and forecast potential management effects in changing insect disturbance trends. However, detailed forest composition data needed for these efforts is often lacking. Here, we used partial least squares (PLS) regression to integrate satellite sensor data from Landsat, Radarsat-1, and PALSAR, as well as pixel-wise forest structure information derived from SPOT-5 sensor data (Wolter et al. 2009), to estimate species-level forest composition of 12 species required for modeling efforts. C-band Radarsat-1 data and L-band PALSAR data were frequently among the strongest predictors of forest composition. Pixel-level forest structure data were more important for estimating conifer rather than hardwood forest composition. The coefficients of determination for species relative basal area (RBA) ranged from 0.57 (white cedar) to 0.94 (maple) with RMSE of 8.88 to 6.44 % RBA, respectively. Receiver operating characteristic (ROC) curves were used to determine the effective lower limits of usefulness of species RBA estimates which ranged from 5.94 % (jack pine) to 39.41 % (black ash). These estimates were then used to produce a dominant forest species map for the study region with an overall accuracy of 78 %. Most notably, this approach facilitated discrimination of aspen from birch as well as spruce and fir from other conifer species which is crucial for the study of forest tent caterpillar and spruce budworm dynamics, respectively, in the Upper Midwest. Thus, use of PLS regression as a data fusion strategy has proven to be an effective tool for regional characterization of forest

  6. Species-dependent variation in sensitivity of Microcystis species to copper sulfate: implication in algal toxicity of copper and controls of blooms

    NASA Astrophysics Data System (ADS)

    Wu, Haiming; Wei, Gaojie; Tan, Xiao; Li, Lin; Li, Ming

    2017-01-01

    Copper sulfate is a frequently used reagent for Microcystis blooms control but almost all the previous works have used Microcystis aeruginosa as the target organism to determine dosages. The aim of this study was to evaluate interspecific differences in the responses of various Microcystis species to varying Cu2+ concentrations (0, 0.05, 0.10, 0.25, and 0.50 mg L‑1). The half maximal effective concentration values for M. aeruginosa, M. wesenbergii, M. flos-aquae, and M. viridis were 0.16, 0.09, 0.49, and 0.45 mg L‑1 Cu2+, respectively. This showed a species-dependent variation in the sensitivity of Microcystis species to copper sulfate. Malonaldehyde content did not decrease with increasing superoxide dismutase content induced by increasing Cu2+, suggesting that superoxide dismutase failed to reduce Cu2+ damage in Microcystis. Considering the risk of microcystin release when Microcystis membranes are destroyed as a result of Cu2+ treatment and the stimulation effects of a low level of Cu2+ on growth in various species, our results suggest that copper sulfate treatment for Microcystis control could be applied before midsummer when M. aeruginosa and M. viridis are not the dominant species and actual amount of Cu2+ used to control M. wesenbergii should be much greater than 0.10 mg L‑1.

  7. Species-dependent variation in sensitivity of Microcystis species to copper sulfate: implication in algal toxicity of copper and controls of blooms

    PubMed Central

    Wu, Haiming; Wei, Gaojie; Tan, Xiao; Li, Lin; Li, Ming

    2017-01-01

    Copper sulfate is a frequently used reagent for Microcystis blooms control but almost all the previous works have used Microcystis aeruginosa as the target organism to determine dosages. The aim of this study was to evaluate interspecific differences in the responses of various Microcystis species to varying Cu2+ concentrations (0, 0.05, 0.10, 0.25, and 0.50 mg L−1). The half maximal effective concentration values for M. aeruginosa, M. wesenbergii, M. flos-aquae, and M. viridis were 0.16, 0.09, 0.49, and 0.45 mg L−1 Cu2+, respectively. This showed a species-dependent variation in the sensitivity of Microcystis species to copper sulfate. Malonaldehyde content did not decrease with increasing superoxide dismutase content induced by increasing Cu2+, suggesting that superoxide dismutase failed to reduce Cu2+ damage in Microcystis. Considering the risk of microcystin release when Microcystis membranes are destroyed as a result of Cu2+ treatment and the stimulation effects of a low level of Cu2+ on growth in various species, our results suggest that copper sulfate treatment for Microcystis control could be applied before midsummer when M. aeruginosa and M. viridis are not the dominant species and actual amount of Cu2+ used to control M. wesenbergii should be much greater than 0.10 mg L−1. PMID:28079177

  8. Algal exudates and stream organic matter influence the structure and function of denitrifying bacterial communities.

    PubMed

    Kalscheur, Kathryn N; Rojas, Miguel; Peterson, Christopher G; Kelly, John J; Gray, Kimberly A

    2012-11-01

    Within aquatic ecosystems, periphytic biofilms can be hot spots of denitrification, and previous work has suggested that algal taxa within periphyton can influence the species composition and activity of resident denitrifying bacteria. This study tested the hypothesis that algal species composition within biofilms influences the structure and function of associated denitrifying bacterial communities through the composition of organic exudates. A mixed population of bacteria was incubated with organic carbon isolated from one of seven algal species or from one of two streams that differed in anthropogenic inputs. Pyrolysis-gas chromatography-mass spectrometry (Py-GC/MS) revealed differences in the organic composition of algal exudates and stream waters, which, in turn, selected for distinct bacterial communities. Organic carbon source had a significant effect on potential denitrification rates (DNP) of the communities, with organics isolated from a stream with high anthropogenic inputs resulting in a bacterial community with the highest DNP. There was no correlation between DNP and numbers of denitrifiers (based on nirS copy numbers), but there was a strong relationship between the species composition of denitrifier communities (as indicated by tag pyrosequencing of nosZ genes) and DNP. Specifically, the relative abundance of Pseudomonas stutzeri-like nosZ sequences across treatments correlated significantly with DNP, and bacterial communities incubated with organic carbon from the stream with high anthropogenic inputs had the highest relative abundance of P. stutzeri-like nosZ sequences. These results demonstrate a significant relationship between bacterial community composition and function and provide evidence of the potential impacts of anthropogenic inputs on the structure and function of stream microbial communities.

  9. Effects of temperature, salinity, and irradiance on the growth of harmful algal bloom species Phaeocystis globosa Scherffel (Prymnesiophyceae) isolated from the South China Sea

    NASA Astrophysics Data System (ADS)

    Xu, Ning; Huang, Bozhu; Hu, Zhangxi; Tang, Yingzhong; Duan, Shunshan; Zhang, Chengwu

    2016-06-01

    Blooms of Phaeocystis globosa have been frequently reported in Chinese coastal waters, causing serious damage to marine ecosystems. To better understand the ecological characteristics of P. globosa in Chinese coastal waters that facilitate its rapid expansion, the effects of temperature, salinity and irradiance on the growth of P. globosa from the South China Sea were examined in the laboratory. The saturating irradiance for the growth of P. globosa (I s) was 60 μmol/(m2•s), which was lower than those of other harmful algal species (70-114 μmol/(m2•s)). A moderate growth rate of 0.22/d was observed at 2 μmol/(m2•s) (the minimum irradiance in the experiment), and photo-inhibition did not occur at 230 μmol/(m2•s) (the maximum irradiance in the experiment). Exposed to 42 different combinations of temperatures (10-31°C) and salinities (10-40) under saturating irradiance, P. globosa exhibited its maximum specific growth rate of 0.80/d at the combinations of 24°C and 35, and 27°C and 40. The optimum growth rates (>0.80/d) were observed at temperatures ranging from 24 to 27°C and salinities from 35 to 40. While P. globosa was able to grow well at temperatures from 20°C to 31°C and salinities from 20 to 40, it could not grow at temperatures lower than 15°C or salinities lower than 15. Factorial analysis revealed that temperature and salinity has similar influences on the growth of this species. This strain of P. globosa not only prefers higher temperatures and higher salinity, but also possesses a flexible nutrient competing strategy, adapted to lower irradiance. Therefore, the P. globosa population from South China Sea should belong to a new ecotype. There is also a potentially high risk of blooms developing in this area throughout the year.

  10. Conservation Tillage Affects Species Composition But Not Species Diversity: A Comparative Study in Northern Italy

    NASA Astrophysics Data System (ADS)

    Boscutti, Francesco; Sigura, Maurizia; Gambon, Nadia; Lagazio, Corrado; Krüsi, Bertil O.; Bonfanti, Pierluigi

    2015-02-01

    Conservation tillage (CT) is widely considered to be a practice aimed at preserving several ecosystem functions. In the literature, however, there seems to be no clear pattern with regard to its benefits on species diversity and species composition. In Northern Italy, we compared species composition and diversity of both vascular plants and Carabids under two contrasting tillage systems, i.e., CT and conventional tillage, respectively. We hypothesized a significant positive impact of CT on both species diversity and composition. We also considered the potential influence of crop type. The tillage systems were studied under open field conditions with three types of annual crops (i.e., maize, soybean, and winter cereals), using a split-plot design on pairs of adjacent fields. Linear mixed models were applied to test tillage system, crop, and interaction effects on diversity indices. Plant and Carabids communities were analyzed by multivariate methods (CCA). On the whole, 136 plant and 51 carabid taxa were recorded. The two tillage systems studied did not differ in floristic or carabid diversity. Species composition, by contrast, proved to be characteristic for each combination of tillage system and crop type. In particular, CT fields were characterized by nutrient demanding weeds and the associated Carabids. The differences were especially pronounced in fields with winter cereals. The same was true for the flora and Carabids along the field boundaries. For studying the effects of CT practices on the sustainability of agro-ecosystems, therefore, the focus should be on species composition rather than on diversity measures.

  11. Algal blooms and public health

    SciTech Connect

    Epstein, P.R. . Harvard Medical School)

    1993-06-01

    Alterations in coastal ecology are expanding the geographic extent, frequency, magnitude, and species complexity'' of algal blooms throughout the world, increasing the threat of fish and shellfish poisonings, anoxia in marine nurseries, and of cholera. The World Health Organization and members of the medical profession have described the potential health effects of global climate change. They warn of the consequences of increased ultraviolet-B (UV-B) rays and of warming: the possible damage to agriculture and nutrition, and the impact on habitats which may alter the distribution of vector-borne and water-based infectious diseases. Algal growth due to increased nitrogen (N) and phosphorus (P) and warming are already affecting marine microflora and aquatic plants; and there is now clear evidence that marine organisms are a reservoir for enteric pathogens. The pattern of cholera in the Western Hemisphere suggests that environmental changes have already begun to influence the epidemiology of this infectious disease. 106 refs.

  12. ALGAL RESPONSE TO NUTRIENT ENRICHMENT IN FORESTED OLIGOTROPHIC STREAM(1).

    PubMed

    Veraart, Annelies J; Romaní, Anna M; Tornés, Elisabet; Sabater, Sergi

    2008-06-01

    Nutrient input in streams alters the density and species composition of attached algal communities in open systems. However, in forested streams, the light reaching the streambed (rather than the local nutrient levels) may limit the growth of these communities. A nutrient-enrichment experiment in a forested oligotrophic stream was performed to test the hypothesis that nutrient addition has only minor effects on the community composition of attached algae and cyanobacteria under light limitation. Moderate nutrient addition consisted of increasing basal phosphorus (P) concentrations 3-fold and basal nitrogen (N) concentrations 2-fold. Two upstream control reaches were compared to a downstream reach before and after nutrient addition. Nutrients were added continuously to the downstream reach for 1 year. Algal biofilms growing on ceramic tiles were sampled and identified for more than a year before nutrient addition to 12 months after. Diatoms were the most abundant taxonomic group in the three stream reaches. Nutrient enrichment caused significant variations in the composition of the diatom community. While some taxa showed significant decreases (e.g., Achnanthes minutissima, Gomphonema angustum), increases for other taxa (such as Rhoicosphenia abbreviata and Amphora ovalis) were detected in the enriched reach (for taxonomic authors, see Table 2). Epiphytic and adnate taxa of large size were enhanced, particularly during periods of favorable growth conditions (spring). Nutrients also caused a change in the algal chl a, which increased from 0.5-5.8 to 2.1-10.7 μg chl · cm(-2) . Our results indicate that in oligotrophic forested streams, long-term nutrient addition has significant effects on the algal biomass and community composition, which are detectable despite the low light availability caused by the tree canopy. Low light availability moderates but does not detain the long-term tendency toward a nutrient-tolerant community. Furthermore, the effects

  13. The Impact of Harmful Algal Blooms on USACE Operations

    DTIC Science & Technology

    2009-01-01

    algae multiply rapidly and accumulate in large numbers, creating an event referred to as an algal bloom. Algal blooms have occurred throughout... algae for their color (Woods Hole Oceanographic Institute 2008; Vézie et al. 1998, 2002). Algal blooms can prove harmful through reductions in...when algae species produce toxins such as microcystin, saxitoxin, brevetoxin, ciguatoxin, or domoic acid (Van Dolah 2000). There is still much to be

  14. Algal pigments in Southern Ocean abyssal foraminiferans indicate pelagobenthic coupling

    NASA Astrophysics Data System (ADS)

    Cedhagen, Tomas; Cheah, Wee; Bracher, Astrid; Lejzerowicz, Franck

    2014-10-01

    The cytoplasm of four species of abyssal benthic foraminiferans from the Southern Ocean (around 51°S; 12°W and 50°S; 39°W) was analysed by High Performance Liquid Chromatography (HPLC) and found to contain large concentrations of algal pigments and their degradation products. The composition of the algal pigments in the foraminiferan cytoplasm reflected the plankton community at the surface. Some foraminiferans contained high ratios of chlorophyll a/degraded pigments because they were feeding on fresher phytodetritus. Other foraminiferans contained only degraded pigments which shows that they utilized degraded phytodetritus. The concentration of algal pigment and corresponding degradation products in the foraminiferan cytoplasm is much higher than in the surrounding sediment. It shows that the foraminiferans collect a diluted and sparse food resource and concentrate it as they build up their cytoplasm. This ability contributes to the understanding of the great quantitative success of foraminiferans in the deep sea. Benthic foraminiferans are a food source for many abyssal metazoans. They form a link between the degraded food resources, phytodetritus, back to the active metazoan food chains.

  15. Genetic diversity of algal and fungal partners in four species of Umbilicaria (Lichenized Ascomycetes) along a transect of the Antarctic peninsula.

    PubMed

    Romeike, J; Friedl, T; Helms, G; Ott, S

    2002-08-01

    Lichens from the genus Umbilicaria were collected across a 5,000-km transect through Antarctica and investigated for DNA sequence polymorphism in a region of 480-660 bp of the nuclear internal transcribed spacer region of ribosomal DNA. Sequences from both fungal (16 ascomycetes) and photosynthetic partners (22 chlorophytes from the genus Trebouxia) were determined and compared with homologs from lichens inhabiting more temperate, continental climates. The phylogenetic analyses reveal that Antarctic lichens have colonized their current habitats both through multiple independent colonization events from temperate embarkation zones and through recent long-range dispersal in the Antarctic of successful preexisting colonizers. Furthermore, the results suggest that relichenization-de novo establishment of the fungus-photosynthesizer symbiosis from nonlichenized algal and fungal cells-has occurred during the process of Antarctic lichen dispersal. Independent dispersal of algal and fungal cultures therefore can lead to a successful establishment of the lichen symbiosis even under harsh Antarctic conditions.

  16. Algal Attributes: An Autecological Classification of Algal Taxa Collected by the National Water-Quality Assessment Program

    USGS Publications Warehouse

    Porter, Stephen D.

    2008-01-01

    Algae are excellent indicators of water-quality conditions, notably nutrient and organic enrichment, and also are indicators of major ion, dissolved oxygen, and pH concentrations and stream microhabitat conditions. The autecology, or physiological optima and tolerance, of algal species for various water-quality contaminants and conditions is relatively well understood for certain groups of freshwater algae, notably diatoms. However, applications of autecological information for water-quality assessments have been limited because of challenges associated with compiling autecological literature from disparate sources, tracking name changes for a large number of algal species, and creating an autecological data base from which algal-indicator metrics can be calculated. A comprehensive summary of algal autecological attributes for North American streams and rivers does not exist. This report describes a large, digital data file containing 28,182 records for 5,939 algal taxa, generally species or variety, collected by the U.S. Geological Survey?s National Water-Quality Assessment (NAWQA) Program. The data file includes 37 algal attributes classified by over 100 algal-indicator codes or metrics that can be calculated easily with readily available software. Algal attributes include qualitative classifications based on European and North American autecological literature, and semi-quantitative, weighted-average regression approaches for estimating optima using regional and national NAWQA data. Applications of algal metrics in water-quality assessments are discussed and national quartile distributions of metric scores are shown for selected indicator metrics.

  17. Mechanism and challenges in commercialisation of algal biofuels.

    PubMed

    Singh, Anoop; Nigam, Poonam Singh; Murphy, Jerry D

    2011-01-01

    Biofuels made from algal biomass are being considered as the most suitable alternative energy in current global and economical scenario. Microalgae are known to produce and accumulate lipids within their cell mass which is similar to those found in many vegetable oils. The efficient lipid producer algae cell mass has been reported to contain more than 30% of their cell weight as lipids. According to US DOE microalgae have the potential to produce 100 times more oil per acre land than any terrestrial plants. This article reviews up to date literature on the composition of algae, mechanism of oil droplets, triacylglycerol (TAG) production in algal biomass, research and development made in the cultivation of algal biomass, harvesting strategies, and recovery of lipids from algal mass. The economical challenges in the production of biofuels from algal biomass have been discussed in view of the future prospects in the commercialisation of algal fuels.

  18. Wastewater treatment high rate algal ponds for biofuel production.

    PubMed

    Park, J B K; Craggs, R J; Shilton, A N

    2011-01-01

    While research and development of algal biofuels are currently receiving much interest and funding, they are still not commercially viable at today's fossil fuel prices. However, a niche opportunity may exist where algae are grown as a by-product of high rate algal ponds (HRAPs) operated for wastewater treatment. In addition to significantly better economics, algal biofuel production from wastewater treatment HRAPs has a much smaller environmental footprint compared to commercial algal production HRAPs which consume freshwater and fertilisers. In this paper the critical parameters that limit algal cultivation, production and harvest are reviewed and practical options that may enhance the net harvestable algal production from wastewater treatment HRAPs including CO(2) addition, species control, control of grazers and parasites and bioflocculation are discussed.

  19. Species loss on spatial patterns and composition of zoonotic parasites

    PubMed Central

    Harris, Nyeema C.; Dunn, Robert R.

    2013-01-01

    Species loss can result in the subsequent loss of affiliate species. Though largely ignored to date, these coextinctions can pose threats to human health by altering the composition, quantity and distribution of zoonotic parasites. We simulated host extinctions from more than 1300 host–parasite associations for 29 North American carnivores to investigate changes in parasite composition and species richness. We also explored the geography of zoonotic parasite richness under three carnivore composition scenarios and examined corresponding levels of human exposure. We found that changes in parasite assemblages differed among parasite groups. Because viruses tend to be generalists, the proportion of parasites that are viruses increased as more carnivores went extinct. Coextinction of carnivore parasites is unlikely to be common, given that few specialist parasites exploit hosts of conservation concern. However, local extirpations of widespread carnivore hosts can reduce overall zoonotic richness and shift distributions of parasite-rich areas. How biodiversity influences disease risks remains the subject of debate. Our results make clear that hosts vary in their contribution to human health risks. As a consequence, so too does the loss (or gain) of particular hosts. Anticipating changes in host composition in future environments may help inform parasite conservation and disease mitigation efforts. PMID:24068356

  20. Assessing the potential of polyculture to accelerate algal biofuel production

    SciTech Connect

    Newby, Deborah T.; Mathews, Teresa J.; Pate, Ron C.; Huesemann, Michael H.; Lane, Todd W.; Wahlen, Bradley D.; Mandal, Shovon; Engler, Robert K.; Feris, Kevin P.; Shurin, Jon B.

    2016-10-24

    To date, the algal biofuel industry has focused on the cultivation of monocultures of highly productive algal strains, but scaling up production remains challenging. However, algal monocultures are difficult to maintain because they are easily contaminated by wild algal strains, grazers, and pathogens. In contrast, theory suggests that polycultures (multispecies assemblages) can promote both ecosystem stability and productivity. A greater understanding of species interactions and how communities change with time will need to be developed before polycultures can be successfully applied to large-scale algal production efforts. Here in this paper we review the agricultural and ecological literature to explore opportunities for increased annual biomass production through the use of algal polycultures. We discuss case studies where algal polycultures have been successfully maintained for industries other than the biofuel industry, as well as the few studies that have compared biomass production of algal polycultures to that of monocultures. Assemblages that include species with complementary traits are of particular promise. These assemblages have the potential not only to increase crop productivity and stability, but they may also be capable of utilizing natural resources (e.g. light, nutrients, water) more efficiently via tighter niche packing. Therefore, algal polycultures show promise for enhancing biomass productivity, enabling sustainable production and reducing overall production costs.

  1. Assessing the potential of polyculture to accelerate algal biofuel production

    DOE PAGES

    Newby, Deborah T.; Mathews, Teresa J.; Pate, Ron C.; ...

    2016-10-24

    To date, the algal biofuel industry has focused on the cultivation of monocultures of highly productive algal strains, but scaling up production remains challenging. However, algal monocultures are difficult to maintain because they are easily contaminated by wild algal strains, grazers, and pathogens. In contrast, theory suggests that polycultures (multispecies assemblages) can promote both ecosystem stability and productivity. A greater understanding of species interactions and how communities change with time will need to be developed before polycultures can be successfully applied to large-scale algal production efforts. Here in this paper we review the agricultural and ecological literature to explore opportunitiesmore » for increased annual biomass production through the use of algal polycultures. We discuss case studies where algal polycultures have been successfully maintained for industries other than the biofuel industry, as well as the few studies that have compared biomass production of algal polycultures to that of monocultures. Assemblages that include species with complementary traits are of particular promise. These assemblages have the potential not only to increase crop productivity and stability, but they may also be capable of utilizing natural resources (e.g. light, nutrients, water) more efficiently via tighter niche packing. Therefore, algal polycultures show promise for enhancing biomass productivity, enabling sustainable production and reducing overall production costs.« less

  2. Reef structure drives parrotfish species composition on shelf edge reefs in La Parguera, Puerto Rico

    NASA Astrophysics Data System (ADS)

    Tzadik, Orian E.; Appeldoorn, Richard S.

    2013-02-01

    Shelf edge reefs that exist in coral reef ecosystems provide essential habitats for a large variety of fish and other marine organisms. Marine herbivores act as differential algal grazers that advocate coral reef colonization. In the Caribbean basin parrotfishes make up a large contingency of such herbivores and act as important ecological ichthyofauna. By investigating parrotfish relationship with habitat, this study aims to aid in future predictive mapping techniques that will outline parrotfish distributions via benthic quantification. Parrotfish communities were evaluated on the shelf edge reef off of La Parguera, Puerto Rico. Parrotfish abundances were found to positively correlate with high values of overall reef structure. High values of coral cover and of rugosity were strong indicators of most parrotfish species. The lone exception, Scarus taeniopterus, negatively correlated with these factors and positively correlated with algal cover. Indications exist that Scarus taeniopterus and Scarus iseri are sympatric species and can be found in abundance at opposite locations.

  3. Harmful Algal Blooms

    USGS Publications Warehouse

    Graham, Jennifer L.

    2007-01-01

    What are Harmful Algal Blooms (HABs)? Freshwater and marine harmful algal blooms (HABs) can occur anytime water use is impaired due to excessive accumulations of algae. HAB occurrence is affected by a complex set of physical, chemical, biological, hydrological, and meteorological conditions making it difficult to isolate specific causative environmental factors. Potential impairments include reduction in water quality, accumulation of malodorous scums in beach areas, algal production of toxins potent enough to poison both aquatic and terrestrial organisms, and algal production of taste-and-odor compounds that cause unpalatable drinking water and fish. HABs are a global problem, and toxic freshwater and (or) marine algae have been implicated in human and animal illness and death in over 45 countries worldwide and in at least 27 U.S. States (Yoo and others, 1995; Chorus and Bartram, 1999; Huisman and others, 2005).

  4. Indicators: Algal Toxins (microcystin)

    EPA Pesticide Factsheets

    Algal toxins are toxic substances released by some types of algae (phytoplankton) when they are present in large quantities (blooms) and decay or degrade. High nutrient levels and warm temperatures often result in favorable conditions for algae blooms.

  5. Bacterial community composition associated with freshwater algae: species specificity vs. dependency on environmental conditions and source community.

    PubMed

    Eigemann, Falk; Hilt, Sabine; Salka, Ivette; Grossart, Hans-Peter

    2013-03-01

    We studied bacterial associations with the green alga Desmodesmus armatus and the diatom Stephanodiscus minutulus under changing environmental conditions and bacterial source communities, to evaluate whether bacteria-algae associations are species-specific or more generalized and determined by external factors. Axenic and xenic algae were incubated in situ with and without allelopathically active macrophytes, and in the laboratory with sterile and nonsterile lake water and an allelochemical, tannic acid (TA). Bacterial community composition (BCC) of algae-associated bacteria was analyzed by denaturing gradient gel electrophoresis (DGGE), nonmetric multidimensional scaling, cluster analyses, and sequencing of DGGE bands. BCC of xenic algal cultures of both species were not significantly affected by changes in their environment or bacterial source community, except in the case of TA additions. Species-specific interactions therefore appear to overrule the effects of environmental conditions and source communities. The BCC of xenic and axenic D. armatus cultures subjected to in situ bacterial colonization, however, had lower similarities (ca. 55%), indicating that bacterial precolonization is a strong factor for bacteria-algae associations irrespective of environmental conditions and source community. Our findings emphasize the ecological importance of species-specific bacteria-algae associations with important repercussions for other processes, such as the remineralization of nutrients, and organic matter dynamics.

  6. Assessing the bioremediation potential of algal species indigenous to oil sands process-affected waters on mixtures of oil sands acid extractable organics.

    PubMed

    Ruffell, Sarah E; Frank, Richard A; Woodworth, Adam P; Bragg, Leslie M; Bauer, Anthony E; Deeth, Lorna E; Müller, Kirsten M; Farwell, Andrea J; Dixon, D George; Servos, Mark R; McConkey, Brendan J

    2016-11-01

    Surface mining extraction of bitumen from oil sand in Alberta, Canada results in the accumulation of oil sands process-affected water (OSPW). In attempts to maximize water recycling, and because its constituents are recognized as being toxic, OSPW is retained in settling basins. Consequently, research efforts are currently focused on developing remediation strategies capable of detoxifying OSPW to allow for eventual release. One potential bioremediation strategy proposes to utilize phytoplankton native to the Alberta oil sand region to sequester, break down, or modify the complex oil sands acid extractable organic (AEO) mixtures in OSPW. Preliminary attempts to quantify changes in total oil sands AEO concentration in test solutions by ESI-MS following a 14-day algal remediation period revealed the presence of unknown organic acids in control samples, likely released by the phytoplankton strains and often of the same atomic mass range as the oil sands AEO under investigation. To address the presence of these "biogenic" organic acids in test samples, ESI-MS in MRM mode was utilized to identify oil sands AEO "marker ions" that were a) present within the tested oil sands AEO extract and b) unique to the oil sands AEO extract only (e.g. atomic masses different from biogenic organic acids). Using this approach, one of the 21 tested algal strains, Stichococcus sp. 1, proved capable of significantly reducing the AEO marker ion concentration at test concentrations of 10, 30, and 100mgL(-1). This result, along with the accelerated growth rate and recalcitrance of this algal strain with exposure to oil sands AEO, suggests the strong potential for the use of the isolated Stichococcus sp. 1 as a candidate for bioremediation strategies.

  7. Fatty Acid Compositions of Six Wild Edible Mushroom Species

    PubMed Central

    Günç Ergönül, Pelin; Akata, Ilgaz; Kalyoncu, Fatih; Ergönül, Bülent

    2013-01-01

    The fatty acids of six wild edible mushroom species (Boletus reticulatus, Flammulina velutipes var. velutipes, Lactarius salmonicolor, Pleurotus ostreatus, Polyporus squamosus, and Russula anthracina) collected from different regions from Anatolia were determined. The fatty acids were identified and quantified by gas chromatography and studied using fruit bodies. Fatty acid composition varied among species. The dominant fatty acid in fruit bodies of all mushrooms was cis-linoleic acid (18 : 2). Percentage of cis-linoleic acid in species varied from 22.39% to 65.29%. The other major fatty acids were, respectively, cis-oleic, palmitic, and stearic acids. Fatty acids analysis of the mushrooms showed that the unsaturated fatty acids were at higher concentrations than saturated fatty acids. PMID:23844377

  8. Mosquitoes of Zika Forest, Uganda: species composition and relative abundance.

    PubMed

    Kaddumukasa, M A; Mutebi, J-P; Lutwama, J J; Masembe, C; Akol, A M

    2014-01-01

    Mosquito collections were conducted in Zika Forest near Entebbe, Uganda, from July 2009 through June 2010 using CO2-baited light traps, ovitraps, and human-baited catches. In total, 163,790 adult mosquitoes belonging to 12 genera and 58 species were captured. Of these, 22 species (38%) were captured in Zika Forest for the first time. All the new records found in the forest in this study had previously been captured in other regions of Uganda, implying that they are native to the country and do not represent new introductions. More than 20 species previously collected in Zika Forest were not detected in our collections, and this may suggest a change in the mosquito fauna during the past 40 yr or variation in species composition from year to year. Arboviruses of public health importance have previously been isolated from >50% of the 58 mosquito species captured in Zika Forest, which suggests ahigh potential for transmission and maintenance of a wide range of arboviruses in Zika Forest.

  9. Possible importance of algal toxins in the Salton Sea, California

    USGS Publications Warehouse

    Reifel, K.M.; McCoy, M.P.; Rocke, T.E.; Tiffany, M.A.; Hurlbert, S.H.; Faulkner, D.J.

    2002-01-01

    In response to wildlife mortality including unexplained eared grebe (Podiceps nigricollis) die-off events in 1992 and 1994 and other mortality events including large fish kills, a survey was conducted for the presence of algal toxins in the Salton Sea. Goals of this survey were to determine if and when algal toxins are present in the Salton Sea and to describe the phytoplankton composition during those times. A total of 29 samples was collected for toxicity analysis from both nearshore and midlake sites visited biweekly from January to December 1999. Dinoflagellates and diatoms dominated most samples, but some were dominated by a prymnesiophyte (Pleurochrysis pseudoroscoffensis) or a raphidophyte (Chattonella marina). Several types of blooms were observed and sampled. The dinoflagellate Gyrodinium uncatenum formed an extensive, dense (up to 310 000 cells ml-1) and long-lasting bloom during the winter in 1999. A coccolithophorid, Pleurochrysis pseudoroscoffensis, occurred at high densities in surface films and nearshore areas during the spring and summer of 1999. These surface films also contained high densities of one or two other species (an unidentified scrippsielloid, Heterocapsa niei, Chattonella marina). Localized blooms were also observed in the Salton Sea. An unknown small dinoflagellate reached high densities (110 000 cells ml-1) inside Varner Harbor, and an unidentified species of Gymnodinium formed a dense (270 000 cells ml-1) band along part of the southern shoreline during the summer. Three species known to produce toxins in other systems were found. Protoceratium reticulatum (=Gonyaulax grindleyi) and Chattonella marina were found in several samples taken during summer months, and Prorocentrum minimum was found in low densities in several samples. Extracts of most samples, including those containing known toxic species, showed a low level (<10% mortality across all concentrations) of activity in the brine shrimp lethality assay and were not considered

  10. Coccolithophore Dynamics In Alfonso Basin: Seasonal Variation And Species Composition

    NASA Astrophysics Data System (ADS)

    Cortés, M. Y.; Urcádiz-Cázares, F. J.; Silverberg, N.; Aguirre-Bahena, F.; Bollmann, J.

    2007-05-01

    The production of organic and inorganic carbon by coccolithophores is considered to play a significant role in the global carbon cycle. Therefore, detailed knowledge of their vertical flux is needed. Here we present a time-series record of coccolithophore standing stock and vertical coccolith flux from Alfonso Basin, southwest coast of the Gulf of California. This location is of particular interest as it is very sensitive to changes in environmental conditions and these may be preserved in laminated underlying sediments. Coccolithophore standing stock and assemblage composition were obtained from plankton samples taken at 3- month intervals during 2002-2003. Furthermore, coccolith flux and species composition were determined in samples from a time-series sediment trap (sampling intervals 7-14 days) deployed at 350 m depth from January 2002 to October 2003. The coccolithophore standing stock and coccolith flux varied considerably between sampling periods but, in general, a seasonal pattern was apparent, with low fluxes in spring-summer and maximal values in autumn- winter. During 2002, fluxes ranged from 0.02x108 coccoliths m-2 d-1 in summer to 64.7x108 coccoliths m-2 d-1 in autumn. Values increased considerably during 2003: registering 52.4 x108 coccoliths m-2 d-1 in spring to the highest (128.8x108 coccoliths m-2 d-1) in late summer/autumn. The latter are related to hurricanes that occurred during the sampling period. In total 47 taxa were identified but only three species, Gephyrocapsa oceanica (43.6%), Emiliania huxleyi (28%) and Florisphera profunda (15.7%), constituted 88 percent of the total coccolith flux. This corresponds to the species composition observed in the water column. G. oceanica was always present and its flux pattern followed that of the total flux. The flux of E. huxleyi remained almost constant during the observed time period whereas F. profunda showed peak fluxes in autumn. Although the cosmopolitan species E. huxleyi has been considered the

  11. [The species composition of mosquitoes and ticks in Armenia].

    PubMed

    Manukian, D V; Oganesian, A S; Shakhnazarian, S A; Aleksanian, Iu T

    2006-01-01

    Comprehensive epidemiological, entomological, virological, and parasitological studies were conducted to examine the species composition and size of bloodsucking arthropoda (mosquitoes and ticks). A total of 64,567 mosquitoes and 45,180 Ixodes ticks were collected. Among the mosquitoes, Anopheles maculipennis was a prevalent species (81.6%). In all climatic zones, Dermacentor marginatus was the largest in number and most abundant during flag collections from cattle and plants (62.5% and 95.5%, respectively). Virological studies of the collected field material identified 125 strains of arboviruses belonging to 10 viruses: Tyaginya, Sindbis, Batai, Dkhori, tick-borne encephalitis, West Nile fever, Tamdy, KGL, Geta, and Bkhandzha. The identified arboviruses are environmentally associated with both mosquitoes and ticks. The larger number and diversity of bloodsucking artropoda present a potential risk of outbursts of arbovirus infections on the territory of the republic.

  12. Chemical composition of seed oils in native Taiwanese Camellia species.

    PubMed

    Su, Mong Huai; Shih, Ming Chih; Lin, Kuan-Hung

    2014-08-01

    The aim of this study was to examine the fatty acid (FA) composition and levels in seeds of twelve native Camellia species collected in different populations of major producing regions in Taiwan. The constituents of FAs varied within and among populations. Oleic acid (OA) was found to be the predominant FA constituent in all species. Remarkably high levels of unsaturated OA and linoleic acid (LA), found in two populations of Camellia tenuiflora (CT), C. transarisanensis (CTA), and C. furfuracea (CFA), were similar to those reported for olive oil. The levels of saturated palmitic acid (PA) from most of the tested seed oils were less than 13%. Among the different fats, some FAs can be used as functional ingredients for topical applications. The seed oils of CT, CTA, and CFA possess chemical compounds that make them useful in health-oriented cooking due to their high OA and LA contents and low PA content.

  13. Industrial-strength ecology: trade-offs and opportunities in algal biofuel production.

    PubMed

    Shurin, Jonathan B; Abbott, Rachel L; Deal, Michael S; Kwan, Garfield T; Litchman, Elena; McBride, Robert C; Mandal, Shovon; Smith, Val H

    2013-11-01

    Microalgae represent one of the most promising groups of candidate organisms for replacing fossil fuels with contemporary primary production as a renewable source of energy. Algae can produce many times more biomass per unit area than terrestrial crop plants, easing the competing demands for land with food crops and native ecosystems. However, several aspects of algal biology present unique challenges to the industrial-scale aquaculture of photosynthetic microorganisms. These include high susceptibility to invading aquatic consumers and weeds, as well as prodigious requirements for nutrients that may compete with the fertiliser demands of other crops. Most research on algal biofuel technologies approaches these problems from a cellular or genetic perspective, attempting either to engineer or select algal strains with particular traits. However, inherent functional trade-offs may limit the capacity of genetic selection or synthetic biology to simultaneously optimise multiple functional traits for biofuel productivity and resilience. We argue that a community engineering approach that manages microalgal diversity, species composition and environmental conditions may lead to more robust and productive biofuel ecosystems. We review evidence for trade-offs, challenges and opportunities in algal biofuel cultivation with a goal of guiding research towards intensifying bioenergy production using established principles of community and ecosystem ecology.

  14. Response of an algal assemblage to nutrient enrichment and shading in a Hawaiian stream

    USGS Publications Warehouse

    Stephens, S.H.; Brasher, A.M.D.; Smith, C.M.

    2012-01-01

    To investigate the effects of nitrate enrichment, phosphate enrichment, and light availability on benthic algae, nutrient-diffusing clay flowerpots were colonized with algae at two sites in a Hawaiian stream during spring and autumn 2002 using a randomized factorial design. The algal assemblage that developed under the experimental conditions was investigated by determining biomass (ash-free dry mass and chlorophyll a concentrations) and composition of the diatom assemblage. In situ pulse amplitude-modulated fluorometry was also used to model photosynthetic rate of the algal assemblage. Algal biomass and maximum photosynthetic rate were significantly higher at the unshaded site than at the shaded site. These parameters were higher at the unshaded site with either nitrate, or to a lesser degree, nitrate plus phosphate enrichment. Analysis of similarity of diatom assemblages showed significant differences between shaded and unshaded sites, as well as between spring and autumn experiments, but not between nutrient treatments. However, several individual species of diatoms responded significantly to nitrate enrichment. These results demonstrate that light availability (shaded vs. unshaded) is the primary limiting factor to algal growth in this stream, with nitrogen as a secondary limiting factor. ?? 2011 Springer Science+Business Media B.V.

  15. Chemical composition of some wild peanut species (Arachis L.) seeds.

    PubMed

    Grosso, N R; Nepote, V; Guzmán, C A

    2000-03-01

    Oil, protein, ash, and carbohydrate contents, iodine value, and fatty acid and sterol compositions were studied in seeds of Arachis trinitensis, A. chiquitana, A. kempff-mercadoi, A. diogoi, A. benensis, A. appressipila, A. valida, A. kretschmeri, A. helodes, A. kuhlmannii, A. williamsii, A. sylvestris, A. matiensis, A. pintoi, A. hoehnei, A. villosa, and A. stenosperma. Oil content was greatest in A.stenosperma (mean value = 51.8%). The protein level was higher in A. sylvestris (30.1%) and A. villosa (29.5%). Mean value of oleic acid varied between 30.6% (A. matiensis) and 46.8% (Arachis villosa), and linoleic acid oscillated between 34.1% (A. villosa) and 47.4% (A. appressipila). The better oleic-to-linoleic (O/L) ratio was exhibited by A. villosa (1.38). Some species showed higher concentration of behenic acid. The greatest level of this fatty acid was found in A. matiensis (6.2%). Iodine value was lower in A. valida (99.2). The sterol composition in the different peanut species showed higher concentration of beta-sitosterol (mean values oscillated between 55.7 and 60.2%) followed by campesterol (12.4-16. 5%), stigmasterol (9.7-13.3%), and Delta(5)-avenasterol (9.7-13.4%). The chemical quality and stability of oils (iodine value and O/L ratio) from wild peanut studied in this work are not better than those of cultivated peanut.

  16. Algal Biofuels Fact Sheet

    SciTech Connect

    2009-10-27

    This fact sheet provides information on algal biofuels, which are generating considerable interest around the world. They may represent a sustainable pathway for helping to meet the U.S. biofuel production targets set by the Energy Independence and Security Act of 2007.

  17. Harmful Algal Blooms Research

    EPA Science Inventory

    This project represents the Agency’s first effort to unify harmful algal blooms (HABs) research that had been previously carried out in isolation within various laboratories. A unified program is the most efficient way generate useful results for the Agency’s decision...

  18. Algal Bloom Detection from HICO

    NASA Astrophysics Data System (ADS)

    Amin, Ruhul; Gould, Richard

    2014-05-01

    Ocean color satellites provide daily, global views of marine bio-optical properties in the upper ocean at various spatial scales. The most productive area of the global ocean is the coastal zone which is heavily impacted by urban and agricultural runoff, transportation, recreation, and oil and gas production. In recent years, harmful algal blooms (HABs) have become one of the serious environmental problems in the coastal areas on a global scale. The global nature of the problem has expanded in its frequency, severity, and extent over the last several decades. Human activities and population increases have contributed to an increase in various toxic and noxious algal species in the coastal regions worldwide. Eutrophication in estuaries and coastal waters is believed to be the major factor causing HABs. In this study, we assess the applicability of the Red Band Difference (RBD) HAB detection algorithm on data from the Hyperspectral Imager for the Coastal Ocean (HICO). Our preliminary results show that due to various uncertainties such as atmospheric correction, calibration and possibly also the relatively low signal-to-noise ratio of HICO for fluorescence detection, it is difficult to extract the fluorescence portion of the reflectance spectrum that RBD uses for bloom detection. We propose an improved bloom detection technique for HICO using red and NIR bands. Our results are validated using other space-borne and ground based measurements.

  19. Factors affecting Culicoides species composition and abundance in avian nests.

    PubMed

    Martínez-de la Puente, J; Merino, S; Tomás, G; Moreno, J; Morales, J; Lobato, E; Talavera, S; Sarto I Monteys, V

    2009-08-01

    Mechanisms affecting patterns of vector distribution among host individuals may influence the population and evolutionary dynamics of vectors, hosts and the parasites transmitted. We studied the role of different factors affecting the species composition and abundance of Culicoides found in nests of the blue tit (Cyanistes caeruleus). We identified 1531 females and 2 males of 7 different Culicoides species in nests, with C. simulator being the most abundant species, followed by C. kibunensis, C. festivipennis, C. segnis, C. truncorum, C. pictipennis and C. circumscriptus. We conducted a medicationxfumigation experiment randomly assigning bird's nests to different treatments, thereby generating groups of medicated and control pairs breeding in fumigated and control nests. Medicated pairs were injected with the anti-malarial drug Primaquine diluted in saline solution while control pairs were injected with saline solution. The fumigation treatment was carried out using insecticide solution or water for fumigated and control nests respectively. Brood size was the main factor associated with the abundance of biting midges probably because more nestlings may produce higher quantities of vector attractants. In addition, birds medicated against haemoparasites breeding in non-fumigated nests supported a higher abundance of C. festivipennis than the rest of the groups. Also, we found that the fumigation treatment reduced the abundance of engorged Culicoides in both medicated and control nests, thus indicating a reduction of feeding success produced by the insecticide. These results represent the first evidence for the role of different factors in affecting the Culicoides infracommunity in wild avian nests.

  20. Algal toxins alter copepod feeding behavior.

    PubMed

    Hong, Jiarong; Talapatra, Siddharth; Katz, Joseph; Tester, Patricia A; Waggett, Rebecca J; Place, Allen R

    2012-01-01

    Using digital holographic cinematography, we quantify and compare the feeding behavior of free-swimming copepods, Acartia tonsa, on nutritional prey (Storeatula major) to that occurring during exposure to toxic and non-toxic strains of Karenia brevis and Karlodinium veneficum. These two harmful algal species produce polyketide toxins with different modes of action and potency. We distinguish between two different beating modes of the copepod's feeding appendages-a "sampling beating" that has short durations (<100 ms) and involves little fluid entrainment and a longer duration "grazing beating" that persists up to 1200 ms and generates feeding currents. The durations of both beating modes have log-normal distributions. Without prey, A. tonsa only samples the environment at low frequency. Upon introduction of non-toxic food, it increases its sampling time moderately and the grazing period substantially. On mono algal diets for either of the toxic dinoflagellates, sampling time fraction is high but the grazing is very limited. A. tonsa demonstrates aversion to both toxic algal species. In mixtures of S. major and the neurotoxin producing K. brevis, sampling and grazing diminish rapidly, presumably due to neurological effects of consuming brevetoxins while trying to feed on S. major. In contrast, on mixtures of cytotoxin producing K. veneficum, both behavioral modes persist, indicating that intake of karlotoxins does not immediately inhibit the copepod's grazing behavior. These findings add critical insight into how these algal toxins may influence the copepod's feeding behavior, and suggest how some harmful algal species may alter top-down control exerted by grazers like copepods.

  1. Algal Toxins Alter Copepod Feeding Behavior

    PubMed Central

    Hong, Jiarong; Talapatra, Siddharth; Katz, Joseph; Tester, Patricia A.; Waggett, Rebecca J.; Place, Allen R.

    2012-01-01

    Using digital holographic cinematography, we quantify and compare the feeding behavior of free-swimming copepods, Acartia tonsa, on nutritional prey (Storeatula major) to that occurring during exposure to toxic and non-toxic strains of Karenia brevis and Karlodinium veneficum. These two harmful algal species produce polyketide toxins with different modes of action and potency. We distinguish between two different beating modes of the copepod’s feeding appendages–a “sampling beating” that has short durations (<100 ms) and involves little fluid entrainment and a longer duration “grazing beating” that persists up to 1200 ms and generates feeding currents. The durations of both beating modes have log-normal distributions. Without prey, A. tonsa only samples the environment at low frequency. Upon introduction of non-toxic food, it increases its sampling time moderately and the grazing period substantially. On mono algal diets for either of the toxic dinoflagellates, sampling time fraction is high but the grazing is very limited. A. tonsa demonstrates aversion to both toxic algal species. In mixtures of S. major and the neurotoxin producing K. brevis, sampling and grazing diminish rapidly, presumably due to neurological effects of consuming brevetoxins while trying to feed on S. major. In contrast, on mixtures of cytotoxin producing K. veneficum, both behavioral modes persist, indicating that intake of karlotoxins does not immediately inhibit the copepod’s grazing behavior. These findings add critical insight into how these algal toxins may influence the copepod’s feeding behavior, and suggest how some harmful algal species may alter top-down control exerted by grazers like copepods. PMID:22629336

  2. Discovery of an algicidal compound from Brevibacterium sp. BS01 and its effect on a harmful algal bloom-causing species, Alexandrium tamarense

    PubMed Central

    An, Xinli; Zhang, Bangzhou; Zhang, Huajun; Li, Yi; Zheng, Wei; Yu, Zhiming; Fu, Lijun; Zheng, Tianling

    2015-01-01

    Blooms of the dinoflagellate Alexandrium tamarense have become worldwide phenomena and have detrimental impacts on aquatic ecosystems and human health. In this study, a culture supernatant of the marine actinomycete BS01 exerted a strong algicidal effect on A. tamarense (ATGD98-006). The target algicide from BS01 was separated by adsorption chromatography and identified by MALDI-TOF-MS and NMR analysis. The results suggested that the purified algicidal component corresponded to a hydrophobic compound (2-isobutoxyphenyl)amine (C10H15NO) with a molecular weight of 165 Da, which exhibited a significant algicidal effect (64.5%) on A. tamarense. After incubation in 5 μg/mL of (2-isobutoxyphenyl)amine for 24 h, the algae lost mobility and sank to the bottom of the flasks, and 56.5% of the algae cells lost vitality at a concentration of 20 μg/mL (p < 0.01) despite having intact cell profiles. Morphological analysis revealed that the cell structure of A. tamarense was altered by (2-isobutoxyphenyl)amine resulting in cytoplasm degradation and the loss of organelle integrity. The images following propidium iodide staining suggested that the algal nucleus was also severely damaged and eventually degraded due to exposure to the algicidal compound. All of the results indicate that (2-isobutoxyphenyl)amine from the actinomycete might be a candidate for the control of bloom-forming A. tamarense. PMID:26594205

  3. Algal functional annotation tool

    SciTech Connect

    2012-07-12

    Abstract BACKGROUND: Progress in genome sequencing is proceeding at an exponential pace, and several new algal genomes are becoming available every year. One of the challenges facing the community is the association of protein sequences encoded in the genomes with biological function. While most genome assembly projects generate annotations for predicted protein sequences, they are usually limited and integrate functional terms from a limited number of databases. Another challenge is the use of annotations to interpret large lists of 'interesting' genes generated by genome-scale datasets. Previously, these gene lists had to be analyzed across several independent biological databases, often on a gene-by-gene basis. In contrast, several annotation databases, such as DAVID, integrate data from multiple functional databases and reveal underlying biological themes of large gene lists. While several such databases have been constructed for animals, none is currently available for the study of algae. Due to renewed interest in algae as potential sources of biofuels and the emergence of multiple algal genome sequences, a significant need has arisen for such a database to process the growing compendiums of algal genomic data. DESCRIPTION: The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG

  4. Viable Compositional Analysis of an Eleven Species Oral Polymicrobial Biofilm

    PubMed Central

    Sherry, Leighann; Lappin, Gillian; O'Donnell, Lindsay E.; Millhouse, Emma; Millington, Owain R.; Bradshaw, David J.; Axe, Alyson S.; Williams, Craig; Nile, Christopher J.; Ramage, Gordon

    2016-01-01

    Purpose: Polymicrobial biofilms are abundant in clinical disease, particularly within the oral cavity. Creating complex biofilm models that recapitulate the polymicrobiality of oral disease are important in the development of new chemotherapeutic agents. In order to do this accurately we require the ability to undertake compositional analysis, in addition to determine individual cell viability, which is difficult using conventional microbiology. The aim of this study was to develop a defined multispecies denture biofilm model in vitro, and to assess viable compositional analysis following defined oral hygiene regimens. Methods: An in vitro multispecies denture biofilm containing various oral commensal and pathogenic bacteria and yeast was created on poly (methyl methacrylate) (PMMA). Denture hygiene regimens tested against the biofilm model included brushing only, denture cleansing only and combinational brushing and denture cleansing. Biofilm composition and viability were assessed by culture (CFU) and molecular (qPCR) methodologies. Scanning electron microscopy and confocal laser scanning microscopy were also employed to visualize changes in denture biofilms following treatment. Results: Combinational treatment of brushing and denture cleansing had the greatest impact on multispecies denture biofilms, reducing the number of live cells by more than 2 logs, and altering the overall composition in favor of streptococci. This was even more evident during the sequential testing, whereby daily sequential treatment reduced the total and live number of bacteria and yeast more than those treated intermittently. Bacteria and yeast remaining following treatment tended to aggregate in the pores of the PMMA, proving more difficult to fully eradicate the biofilm. Conclusions: Overall, we are the first to develop a method to enable viable compositional analysis of an 11 species denture biofilm following chemotherapeutic challenge. We were able to demonstrate viable cell

  5. Phylogeography above the species level for perennial species in a composite genus.

    PubMed

    Tremetsberger, Karin; Ortiz, María Ángeles; Terrab, Anass; Balao, Francisco; Casimiro-Soriguer, Ramón; Talavera, María; Talavera, Salvador

    2015-12-07

    In phylogeography, DNA sequence and fingerprint data at the population level are used to infer evolutionary histories of species. Phylogeography above the species level is concerned with the genealogical aspects of divergent lineages. Here, we present a phylogeographic study to examine the evolutionary history of a western Mediterranean composite, focusing on the perennial species of Helminthotheca (Asteraceae, Cichorieae). We used molecular markers (amplified fragment length polymorphism (AFLP), internal transcribed spacer and plastid DNA sequences) to infer relationships among populations throughout the distributional range of the group. Interpretation is aided by biogeographic and molecular clock analyses. Four coherent entities are revealed by Bayesian mixture clustering of AFLP data, which correspond to taxa previously recognized at the rank of subspecies. The origin of the group was in western North Africa, from where it expanded across the Strait of Gibraltar to the Iberian Peninsula and across the Strait of Sicily to Sicily. Pleistocene lineage divergence is inferred within western North Africa as well as within the western Iberian region. The existence of the four entities as discrete evolutionary lineages suggests that they should be elevated to the rank of species, yielding H. aculeata, H. comosa, H. maroccana and H. spinosa, whereby the latter two necessitate new combinations.

  6. Phylogeography above the species level for perennial species in a composite genus

    PubMed Central

    Tremetsberger, Karin; Ortiz, María Ángeles; Terrab, Anass; Balao, Francisco; Casimiro-Soriguer, Ramón; Talavera, María; Talavera, Salvador

    2016-01-01

    In phylogeography, DNA sequence and fingerprint data at the population level are used to infer evolutionary histories of species. Phylogeography above the species level is concerned with the genealogical aspects of divergent lineages. Here, we present a phylogeographic study to examine the evolutionary history of a western Mediterranean composite, focusing on the perennial species of Helminthotheca (Asteraceae, Cichorieae). We used molecular markers (amplified fragment length polymorphism (AFLP), internal transcribed spacer and plastid DNA sequences) to infer relationships among populations throughout the distributional range of the group. Interpretation is aided by biogeographic and molecular clock analyses. Four coherent entities are revealed by Bayesian mixture clustering of AFLP data, which correspond to taxa previously recognized at the rank of subspecies. The origin of the group was in western North Africa, from where it expanded across the Strait of Gibraltar to the Iberian Peninsula and across the Strait of Sicily to Sicily. Pleistocene lineage divergence is inferred within western North Africa as well as within the western Iberian region. The existence of the four entities as discrete evolutionary lineages suggests that they should be elevated to the rank of species, yielding H. aculeata, H. comosa, H. maroccana and H. spinosa, whereby the latter two necessitate new combinations. PMID:26644340

  7. Effects of “Reduced” and “Business-As-Usual” CO2 Emission Scenarios on the Algal Territories of the Damselfish Pomacentrus wardi (Pomacentridae)

    PubMed Central

    Bender, Dorothea; Champ, Connor Michael; Kline, David; Diaz-Pulido, Guillermo; Dove, Sophie

    2015-01-01

    Turf algae are a very important component of coral reefs, featuring high growth and turnover rates, whilst covering large areas of substrate. As food for many organisms, turf algae have an important role in the ecosystem. Farming damselfish can modify the species composition and productivity of such algal assemblages, while defending them against intruders. Like all organisms however, turf algae and damselfishes have the potential to be affected by future changes in seawater (SW) temperature and pCO2. In this study, algal assemblages, in the presence and absence of farming Pomacentrus wardi were exposed to two combinations of SW temperature and pCO2 levels projected for the austral spring of 2100 (the B1 “reduced” and the A1FI “business-as-usual” CO2 emission scenarios) at Heron Island (GBR, Australia). These assemblages were dominated by the presence of red algae and non-epiphytic cyanobacteria, i.e. cyanobacteria that grow attached to the substrate rather than on filamentous algae. The endpoint algal composition was mostly controlled by the presence/absence of farming damselfish, despite a large variability found between the algal assemblages of individual fish. Different scenarios appeared to be responsible for a mild, species specific change in community composition, observable in some brown and green algae, but only in the absence of farming fish. Farming fish appeared unaffected by the conditions to which they were exposed. Algal biomass reductions were found under “reduced” CO2 emission, but not “business-as-usual” scenarios. This suggests that action taken to limit CO2 emissions may, if the majority of algae behave similarly across all seasons, reduce the potential for phase shifts that lead to algal dominated communities. At the same time the availability of food resources to damselfish and other herbivores would be smaller under “reduced” emission scenarios. PMID:26121163

  8. Effects of "Reduced" and "Business-As-Usual" CO2 Emission Scenarios on the Algal Territories of the Damselfish Pomacentrus wardi (Pomacentridae).

    PubMed

    Bender, Dorothea; Champ, Connor Michael; Kline, David; Diaz-Pulido, Guillermo; Dove, Sophie

    2015-01-01

    Turf algae are a very important component of coral reefs, featuring high growth and turnover rates, whilst covering large areas of substrate. As food for many organisms, turf algae have an important role in the ecosystem. Farming damselfish can modify the species composition and productivity of such algal assemblages, while defending them against intruders. Like all organisms however, turf algae and damselfishes have the potential to be affected by future changes in seawater (SW) temperature and pCO2. In this study, algal assemblages, in the presence and absence of farming Pomacentrus wardi were exposed to two combinations of SW temperature and pCO2 levels projected for the austral spring of 2100 (the B1 "reduced" and the A1FI "business-as-usual" CO2 emission scenarios) at Heron Island (GBR, Australia). These assemblages were dominated by the presence of red algae and non-epiphytic cyanobacteria, i.e. cyanobacteria that grow attached to the substrate rather than on filamentous algae. The endpoint algal composition was mostly controlled by the presence/absence of farming damselfish, despite a large variability found between the algal assemblages of individual fish. Different scenarios appeared to be responsible for a mild, species specific change in community composition, observable in some brown and green algae, but only in the absence of farming fish. Farming fish appeared unaffected by the conditions to which they were exposed. Algal biomass reductions were found under "reduced" CO2 emission, but not "business-as-usual" scenarios. This suggests that action taken to limit CO2 emissions may, if the majority of algae behave similarly across all seasons, reduce the potential for phase shifts that lead to algal dominated communities. At the same time the availability of food resources to damselfish and other herbivores would be smaller under "reduced" emission scenarios.

  9. Algal Cell Response to Pulsed Waved Stimulation and Its Application to Increase Algal Lipid Production

    PubMed Central

    Savchenko, Oleksandra; Xing, Jida; Yang, Xiaoyan; Gu, Quanrong; Shaheen, Mohamed; Huang, Min; Yu, Xiaojian; Burrell, Robert; Patra, Prabir; Chen, Jie

    2017-01-01

    Generating renewable energy while sequestering CO2 using algae has recently attracted significant research attention, mostly directing towards biological methods such as systems biology, genetic engineering and bio-refining for optimizing algae strains. Other approaches focus on chemical screening to adjust culture conditions or culture media. We report for the first time the physiological changes of algal cells in response to a novel form of mechanical stimulation, or a pulsed wave at the frequency of 1.5 MHz and the duty cycle of 20%. We studied how the pulsed wave can further increase algal lipid production on top of existing biological and chemical methods. Two commonly used algal strains, fresh-water Chlorella vulgaris and seawater Tetraselmis chuii, were selected. We have performed the tests in shake flasks and 1 L spinner-flask bioreactors. Conventional Gravimetric measurements show that up to 20% increase for algal lipid could be achieved after 8 days of stimulation. The total electricity cost needed for the stimulations in a one-liter bioreactor is only one-tenth of a US penny. Gas liquid chromatography shows that the fatty acid composition remains unchanged after pulsed-wave stimulation. Scanning electron microscope results also suggest that pulsed wave stimulation induces shear stress and thus increases algal lipid production. PMID:28186124

  10. Algal Cell Response to Pulsed Waved Stimulation and Its Application to Increase Algal Lipid Production

    NASA Astrophysics Data System (ADS)

    Savchenko, Oleksandra; Xing, Jida; Yang, Xiaoyan; Gu, Quanrong; Shaheen, Mohamed; Huang, Min; Yu, Xiaojian; Burrell, Robert; Patra, Prabir; Chen, Jie

    2017-02-01

    Generating renewable energy while sequestering CO2 using algae has recently attracted significant research attention, mostly directing towards biological methods such as systems biology, genetic engineering and bio-refining for optimizing algae strains. Other approaches focus on chemical screening to adjust culture conditions or culture media. We report for the first time the physiological changes of algal cells in response to a novel form of mechanical stimulation, or a pulsed wave at the frequency of 1.5 MHz and the duty cycle of 20%. We studied how the pulsed wave can further increase algal lipid production on top of existing biological and chemical methods. Two commonly used algal strains, fresh-water Chlorella vulgaris and seawater Tetraselmis chuii, were selected. We have performed the tests in shake flasks and 1 L spinner-flask bioreactors. Conventional Gravimetric measurements show that up to 20% increase for algal lipid could be achieved after 8 days of stimulation. The total electricity cost needed for the stimulations in a one-liter bioreactor is only one-tenth of a US penny. Gas liquid chromatography shows that the fatty acid composition remains unchanged after pulsed-wave stimulation. Scanning electron microscope results also suggest that pulsed wave stimulation induces shear stress and thus increases algal lipid production.

  11. Algal Cell Response to Pulsed Waved Stimulation and Its Application to Increase Algal Lipid Production.

    PubMed

    Savchenko, Oleksandra; Xing, Jida; Yang, Xiaoyan; Gu, Quanrong; Shaheen, Mohamed; Huang, Min; Yu, Xiaojian; Burrell, Robert; Patra, Prabir; Chen, Jie

    2017-02-10

    Generating renewable energy while sequestering CO2 using algae has recently attracted significant research attention, mostly directing towards biological methods such as systems biology, genetic engineering and bio-refining for optimizing algae strains. Other approaches focus on chemical screening to adjust culture conditions or culture media. We report for the first time the physiological changes of algal cells in response to a novel form of mechanical stimulation, or a pulsed wave at the frequency of 1.5 MHz and the duty cycle of 20%. We studied how the pulsed wave can further increase algal lipid production on top of existing biological and chemical methods. Two commonly used algal strains, fresh-water Chlorella vulgaris and seawater Tetraselmis chuii, were selected. We have performed the tests in shake flasks and 1 L spinner-flask bioreactors. Conventional Gravimetric measurements show that up to 20% increase for algal lipid could be achieved after 8 days of stimulation. The total electricity cost needed for the stimulations in a one-liter bioreactor is only one-tenth of a US penny. Gas liquid chromatography shows that the fatty acid composition remains unchanged after pulsed-wave stimulation. Scanning electron microscope results also suggest that pulsed wave stimulation induces shear stress and thus increases algal lipid production.

  12. Copper desorption from Gelidium algal biomass.

    PubMed

    Vilar, Vítor J P; Botelho, Cidália M S; Boaventura, Rui A R

    2007-04-01

    Desorption of divalent copper from marine algae Gelidium sesquipedale, an algal waste (from agar extraction industry) and a composite material (the algal waste immobilized in polyacrylonitrile) was studied in a batch system. Copper ions were first adsorbed until saturation and then desorbed by HNO(3) and Na(2)EDTA solutions. Elution efficiency using HNO(3) increases as pH decreases. At pH=1, for a solid to liquid ratio S/L=4gl(-1), elution efficiency was 97%, 95% and 88%, the stoichiometric coefficient for the ionic exchange, 0.70+/-0.02, 0.73+/-0.05 and 0.76+/-0.06 and the selectivity coefficient, 0.93+/-0.07, 1.0+/-0.3 and 1.1+/-0.3, respectively, for algae Gelidium, algal waste and composite material. Complexation of copper ions by EDTA occurs in a molar proportion of 1:1 and the elution efficiency increases with EDTA concentration. For concentrations of 1.4, 0.88 and 0.57 mmoll(-1), the elution efficiency for S/L=4gl(-1), was 91%, 86% and 78%, respectively, for algae Gelidium, algal waste and composite material. The S/L ratio, in the range 1-20gl(-1), has little influence on copper recovery by using 0.1M HNO(3). Desorption kinetics was very fast for all biosorbents. Kinetic data using HNO(3) as eluant were well described by the mass transfer model, considering the average metal concentration in the solid phase and the equilibrium relationship given by the mass action law. The homogeneous diffusion coefficient varied between 1.0 x 10(-7)cm(2)s(-1) for algae Gelidium and 3.0 x 10(-7)cm(2)s(-1) for the composite material.

  13. Inference methods for spatial variation in species richness and community composition when not all species are detected

    USGS Publications Warehouse

    Nichols, J.D.; Boulinier, T.; Hines, J.E.; Pollock, K.H.; Sauer, J.R.

    1998-01-01

    Inferences about spatial variation in species richness and community composition are important both to ecological hypotheses about the structure and function of communities and to community-level conservation and management. Few sampling programs for animal communities provide censuses, and usually some species present. We present estimators useful for drawing inferences about comparative species richness and composition between different sampling locations when not all species are detected in sampling efforts. Based on capture-recapture models using the robust design, our methods estimate relative species richness, proportion of species in one location that are also found in another, and number of species found in one location but not in another. The methods use data on the presence or absence of each species at different sampling occasions (or locations) to estimate the number of species not detected at any occasions (or locations). This approach permits estimation of the number of species in the sampled community and in subsets of the community useful for estimating the fraction of species shared by two communities. We provide an illustration of our estimation methods by comparing bird species richness and composition in two locations sampled by routes of the North American Breeding Bird Survey. In this example analysis, the two locations (an associated bird communities) represented different levels of urbanization. Estimates of relative richness, proportion of shared species, and number of species present on one route but not the other indicated that the route with the smaller fraction of urban area had greater richness and a larer number of species that were not found on the more urban route than vice versa. We developed a software package, COMDYN, for computing estimates based on the methods. Because these estimation methods explicitly deal with sampling in which not all species are detected, we recommend their use for addressing questions about species

  14. Algal taxonomy: a road to nowhere?

    PubMed

    De Clerck, Olivier; Guiry, Michael D; Leliaert, Frederik; Samyn, Yves; Verbruggen, Heroen

    2013-04-01

    The widespread view of taxonomy as an essentially retrogressive and outmoded science unable to cope with the current biodiversity crisis stimulated us to analyze the current status of cataloguing global algal diversity. Contrary to this largely pessimistic belief, species description rates of algae through time and trends in the number of active taxonomists, as revealed by the web resource AlgaeBase, show a much more positive picture. More species than ever before are being described by a large community of algal taxonomists. The lack of any decline in the rate at which new species and genera are described, however, is indicative of the large proportion of undiscovered diversity and bears heavily on any prediction of global algal species diversity and the time needed to catalogue it. The saturation of accumulation curves of higher taxa (family, order, and classes) on the other hand suggest that at these taxonomic levels most diversity has been discovered. This reasonably positive picture does not imply that algal taxonomy does not face serious challenges in the near future. The observed levels of cryptic diversity in algae, combined with the shift in methods used to characterize them, have resulted in a rampant uncertainty about the status of many older species. As a consequence, there is a tendency in phycology to move gradually away from traditional names to a more informal system whereby clade-, specimen- or strain-based identifiers are used to communicate biological information. Whether these informal names for species-level clades represent a temporary situation stimulated by the lag between species discovery and formal description, or an incipient alternative or parallel taxonomy, will be largely determined by how well we manage to integrate historical collections into modern taxonomic research. Additionally, there is a pressing need for a consensus about the organizational framework to manage the information about algal species names. An eventual strategy

  15. Effects of algal-derived carbon on sediment methane ...

    EPA Pesticide Factsheets

    Nutrient loading is known to have adverse consequences for aquatic ecosystems, particularly in the form of algal blooms that may result. These blooms pose problems for humans and wildlife, including harmful toxin release, aquatic hypoxia and increased costs for water treatment. Another potential disservice resulting from algal blooms is the enhanced production of methane (CH4), a potent greenhouse gas, in aquatic sediments. Laboratory experiments have shown that algal biomass additions to sediment cores increase rates of CH4 production, but it is unclear whether or not this effect occurs at the ecosystem scale. The goal of this research was to explore the link between algal-derived carbon and methane production in the sediment of a eutrophic reservoir located in southwest Ohio, using a sampling design that capitalized on spatial and temporal gradients in autochthonous carbon input to sediments. Specifically, we aimed to determine if the within-reservoir gradient of sediment algal-derived organic matter and sediment CH4 production rates correlate. This was done by retrieving sediment cores from 15 sites within the reservoir along a known gradient of methane emission rates, at two separate time points in 2016: late spring before the sediments had received large amounts of algal input and mid-summer after algal blooms had been prevalent in the reservoir. Potential CH4 production rates, sediment organic matter source, and microbial community composition were charac

  16. National Algal Biofuels Technology Roadmap

    SciTech Connect

    Ferrell, John; Sarisky-Reed, Valerie

    2010-05-01

    The framework for National Algal Biofuels Technology Roadmap was constructed at the Algal Biofuels Technology Roadmap Workshop, held December 9-10, 2008, at the University of Maryland-College Park. The Workshop was organized by the Biomass Program to discuss and identify the critical challenges currently hindering the development of a domestic, commercial-scale algal biofuels industry. This Roadmap presents information from a scientific, economic, and policy perspectives that can support and guide RD&D investment in algal biofuels. While addressing the potential economic and environmental benefits of using algal biomass for the production of liquid transportation fuels, the Roadmap describes the current status of algae RD&D. In doing so, it lays the groundwork for identifying challenges that likely need to be overcome for algal biomass to be used in the production of economically viable biofuels.

  17. DNA-Based Taxonomy in Ecologically Versatile Microalgae: A Re-Evaluation of the Species Concept within the Coccoid Green Algal Genus Coccomyxa (Trebouxiophyceae, Chlorophyta).

    PubMed

    Malavasi, Veronica; Škaloud, Pavel; Rindi, Fabio; Tempesta, Sabrina; Paoletti, Michela; Pasqualetti, Marcella

    2016-01-01

    Coccomyxa is a genus of unicellular green algae of the class Trebouxiophyceae, well known for its cosmopolitan distribution and great ecological amplitude. The taxonomy of this genus has long been problematic, due to reliance on badly-defined and environmentally variable morphological characters. In this study, based on the discovery of a new species from an extreme habitat, we reassess species circumscription in Coccomyxa, a unicellular genus of the class Trebouxiophyceae, using a combination of ecological and DNA sequence data (analyzed with three different methods of algorithmic species delineation). Our results are compared with those of a recent integrative study of Darienko and colleagues that reassessed the taxonomy of Coccomyxa, recognizing 7 species in the genus. Expanding the dataset from 43 to 61 sequences (SSU + ITS rDNA) resulted in a different delimitation, supporting the recognition of a higher number of species (24 to 27 depending on the analysis used, with the 27-species scenario receiving the strongest support). Among these, C. melkonianii sp. nov. is described from material isolated from a river highly polluted by heavy metals (Rio Irvi, Sardinia, Italy). Analyses performed on ecological characters detected a significant phylogenetic signal in six different characters. We conclude that the 27-species scenario is presently the most realistic for Coccomyxa and we suggest that well-supported lineages distinguishable by ecological preferences should be recognized as different species in this genus. We also recommend that for microbial lineages in which the overall diversity is unknown and taxon sampling is sparse, as is often the case for green microalgae, the results of analyses for algorithmic DNA-based species delimitation should be interpreted with extreme caution.

  18. DNA-Based Taxonomy in Ecologically Versatile Microalgae: A Re-Evaluation of the Species Concept within the Coccoid Green Algal Genus Coccomyxa (Trebouxiophyceae, Chlorophyta)

    PubMed Central

    Rindi, Fabio; Tempesta, Sabrina; Paoletti, Michela; Pasqualetti, Marcella

    2016-01-01

    Coccomyxa is a genus of unicellular green algae of the class Trebouxiophyceae, well known for its cosmopolitan distribution and great ecological amplitude. The taxonomy of this genus has long been problematic, due to reliance on badly-defined and environmentally variable morphological characters. In this study, based on the discovery of a new species from an extreme habitat, we reassess species circumscription in Coccomyxa, a unicellular genus of the class Trebouxiophyceae, using a combination of ecological and DNA sequence data (analyzed with three different methods of algorithmic species delineation). Our results are compared with those of a recent integrative study of Darienko and colleagues that reassessed the taxonomy of Coccomyxa, recognizing 7 species in the genus. Expanding the dataset from 43 to 61 sequences (SSU + ITS rDNA) resulted in a different delimitation, supporting the recognition of a higher number of species (24 to 27 depending on the analysis used, with the 27-species scenario receiving the strongest support). Among these, C. melkonianii sp. nov. is described from material isolated from a river highly polluted by heavy metals (Rio Irvi, Sardinia, Italy). Analyses performed on ecological characters detected a significant phylogenetic signal in six different characters. We conclude that the 27-species scenario is presently the most realistic for Coccomyxa and we suggest that well-supported lineages distinguishable by ecological preferences should be recognized as different species in this genus. We also recommend that for microbial lineages in which the overall diversity is unknown and taxon sampling is sparse, as is often the case for green microalgae, the results of analyses for algorithmic DNA-based species delimitation should be interpreted with extreme caution. PMID:27028195

  19. Advanced Algal Systems Fact Sheet

    SciTech Connect

    2016-06-01

    Research and development (R&D) on advanced algal biofuels and bioproducts presents an opportunity to sustainably expand biomass resource potential in the United States. The Bioenergy Technologies Office’s (BETO’s) Advanced Algal Systems Program is carrying out a long-term, applied R&D strategy to lower the costs of algal biofuel production by working with partners to develop revolutionary technologies and conduct crosscutting analyses to better understand the potential

  20. Effects of green algal mats on bivalves in a New England mud flat

    NASA Astrophysics Data System (ADS)

    Thiel, M.; Stearns, L. M.; Watling, L.

    1998-03-01

    Concurrent with the spread of green algal mats on tidal flats, reports of macrofauna dieoffs under dense algal mats have increased in numbers. Bivalves seem to be particularly affected by persistent dense algal mats. Bivalve species with a long extendible siphon seem to be less affected underneath algal mats, but no distinction has been made in the past between species with short and those with long siphons, Mya arenaria and Macoma balthica, on an intertidal mudflat in New England. Abundances of M. arenaria declined substantially during the study period when a thick green algal mat covered the mudflat for several months. Numbers of the small bivalve Gemma gemma also decreased substantially, whereas abundances of M. balthica showed minimal variation during the time of algal coverage. In algae removal/addition experiments numbers of M. arenaria decreased, but effects were only significant in an algal addition to previously algal-free mudflat areas. Abundance of M. balthica did not change significantly in the algal removal/additition experiments. Over the time period of the experiment (9 weeks), M. arenaria showed measurable size increase in uncovered mudflat areas, but not underneath algal mats. Similarly, M. balthica only increased in size in the uncovered mudflat area. From these results it is concluded that M. balthica can survive time periods of dense algal coverage because it is able to penetrate through the algal mat with its long extendible siphon, and thus can reach well-oxygenated water layers above the mat. M. arenaria with its thick, less extendible, siphon cannot push through dense algal mats and therefore is more likely to die underneath persistent algal mats.

  1. Factors affecting Archaeal Lipid Compositions of the Sulfolobus Species

    NASA Astrophysics Data System (ADS)

    He, L.; Han, J.; Wei, Y.; Lin, L.; Wei, Y.; Zhang, C.

    2010-12-01

    Temperature is the best known variable affecting the distribution of the archaeal glycerol dibiphytanyl glycerol tetraethers (GDGTs) in marine and freshwater systems. Other variables such as pH, ionic strength, or bicarbonate concentration may also affect archaeal GDGTs in terrestrial systems. Studies of pure cultures can help us pinpoint the specific effects these variables may have on archaeal lipid distribution in natural environments. In this study, three Sulfolobus species (HG4, HB5-2, HB9-6) isolated from Tengchong hot springs (pH 2-3, temperature 73-90°C) in China were used to investigate the effects of temperature, pH, substrate, and type of strain on the composition of GDGTs. Results showed that increase in temperature had negative effects on the relative contents of GDGT-0 (no cyclopentyl rings), GDGT-1 (one cyclopentyl ring), GDGT-2 and GDGT-3 but positive effects on GDGT-4, GDGT-4', GDGT-5 and GDGT-5'. Increase in pH, on the other hand, had negative effects on GDGT-0, GDGT-1, GDGT-4', GDGT-5 and GDGT-5', and positive effects on GDGT-3 and GDGT-4. GDGT-2 remained relatively constant with changing pH. When the HG4 was grown on different substrates, GDGT-5 was five time more abundant in sucrose-grown cultures than in yeast extract- or sulfur- grown cultures, suggesting that carbohydrates may stimulate the production of GDGT-5. For all three species, the ring index (average number of rings) of GDGTs correlated positively with incubation temperature. In HG4, ring index was much lower at optimal pH (3.5) than at other pH values. Ring index of HB5-2 or HB9-6 is higher than that of HG4, suggesting that speciation may affect the degree of cyclization of GDGT of the Sulfolobus. These results indicate that individual archaeal lipids respond differently to changes in environmental variables, which may be also species specific.

  2. DNA nucleoside composition and methylation in several species of microalgae

    SciTech Connect

    Jarvis, E.E.; Dunahay, T.G.; Brown, L.M. )

    1992-06-01

    Total DNA was isolated from 10 species of microalgae, including representatives of the Chlorophyceae (Chlorella ellipsoidea, Chlamydomonas reinhardtii, and Monoraphidium minutum), Bacillariophyceae (Cyclotella cryptica, Navicula saprophila, Nitzschia pusilla, and Phaeodactylum tricornutum), Charophyceae (Stichococcus sp.), Dinophyceae (Crypthecodinium cohnii), and Prasinophyceae (Tetraselmis suecica). Control samples of Escherichia coli and calf thymus DNA were also analyzed. The nucleoside base composition of each DNA sample was determined by reversed-phase high performance liquid chromatography. All samples contained 5-methyldeoxycytidine, although at widely varying levels. In M. minutum, about one-third of the cytidine residues were methylated. Restriction analysis supported this high degree of methylation in M. minutum and suggested that methylation is biased toward 5[prime]-CG dinucleotides. The guanosine + cytosine (GC) contents of the green algae were, with the exception of Stichococcus sp., consistently higher than those of the diatoms. Monoraphidium minutum exhibited an extremely high GC content of 71%. Such a value is rare among eukaryotic organisms and might indicate an unusual codon usage. This work is important for developing strategies for transformation and gene cloning in these algae. 46 refs., 1 fig., 2 tabs.

  3. Distribution, behavior, and condition of herbivorous fishes on coral reefs track algal resources.

    PubMed

    Tootell, Jesse S; Steele, Mark A

    2016-05-01

    Herbivore distribution can impact community structure and ecosystem function. On coral reefs, herbivores are thought to play an important role in promoting coral dominance, but how they are distributed relative to algae is not well known. Here, we evaluated whether the distribution, behavior, and condition of herbivorous fishes correlated with algal resource availability at six sites in the back reef environment of Moorea, French Polynesia. Specifically, we tested the hypotheses that increased algal turf availability would coincide with (1) increased biomass, (2) altered foraging behavior, and (3) increased energy reserves of herbivorous fishes. Fish biomass and algal cover were visually estimated along underwater transects; behavior of herbivorous fishes was quantified by observations of focal individuals; fish were collected to assess their condition; and algal turf production rates were measured on standardized tiles. The best predictor of herbivorous fish biomass was algal turf production, with fish biomass increasing with algal production. Biomass of herbivorous fishes was also negatively related to sea urchin density, suggesting competition for limited resources. Regression models including both algal turf production and urchin density explained 94 % of the variation in herbivorous fish biomass among sites spread over ~20 km. Behavioral observations of the parrotfish Chlorurus sordidus revealed that foraging area increased as algal turf cover decreased. Additionally, energy reserves increased with algal turf production, but declined with herbivorous fish density, implying that algal turf is a limited resource for this species. Our findings support the hypothesis that herbivorous fishes can spatially track algal resources on coral reefs.

  4. Specificity is rarely absolute in coral–algal symbiosis: implications for coral response to climate change

    PubMed Central

    Silverstein, Rachel N.; Correa, Adrienne M. S.; Baker, Andrew C.

    2012-01-01

    Some reef-building corals have been shown to respond to environmental change by shifting the composition of their algal symbiont (genus Symbiodinium) communities. These shifts have been proposed as a potential mechanism by which corals might survive climate stressors, such as increased temperatures. Conventional molecular methods suggest this adaptive capacity may not be widespread because few (∼25%) coral species have been found to associate with multiple Symbiodinium clades. However, these methods can fail to detect low abundance symbionts (typically less than 10–20% of the total algal symbiont community). To determine whether additional Symbiodinium clades are present, but are not detected using conventional techniques, we applied a high-resolution, real-time PCR assay to survey Symbiodinium (in clades A–D) from 39 species of phylogenetically and geographically diverse scleractinian corals. This survey included 26 coral species thought to be restricted to hosting a single Symbiodinium clade (‘symbiotic specialists’). We detected at least two Symbiodinium clades (C and D) in at least one sample of all 39 coral species tested; all four Symbiodinium clades were detected in over half (54%) of the 26 symbiotic specialist coral species. Furthermore, on average, 68 per cent of all sampled colonies within a given coral species hosted two or more symbiont clades. We conclude that the ability to associate with multiple symbiont clades is common in scleractinian (stony) corals, and that, in coral–algal symbiosis, ‘specificity’ and ‘flexibility’ are relative terms: specificity is rarely absolute. The potential for reef corals to adapt or acclimatize to environmental change via symbiont community shifts may therefore be more phylogenetically widespread than has previously been assumed. PMID:22367985

  5. Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change.

    PubMed

    Silverstein, Rachel N; Correa, Adrienne M S; Baker, Andrew C

    2012-07-07

    Some reef-building corals have been shown to respond to environmental change by shifting the composition of their algal symbiont (genus Symbiodinium) communities. These shifts have been proposed as a potential mechanism by which corals might survive climate stressors, such as increased temperatures. Conventional molecular methods suggest this adaptive capacity may not be widespread because few (∼25%) coral species have been found to associate with multiple Symbiodinium clades. However, these methods can fail to detect low abundance symbionts (typically less than 10-20% of the total algal symbiont community). To determine whether additional Symbiodinium clades are present, but are not detected using conventional techniques, we applied a high-resolution, real-time PCR assay to survey Symbiodinium (in clades A-D) from 39 species of phylogenetically and geographically diverse scleractinian corals. This survey included 26 coral species thought to be restricted to hosting a single Symbiodinium clade ('symbiotic specialists'). We detected at least two Symbiodinium clades (C and D) in at least one sample of all 39 coral species tested; all four Symbiodinium clades were detected in over half (54%) of the 26 symbiotic specialist coral species. Furthermore, on average, 68 per cent of all sampled colonies within a given coral species hosted two or more symbiont clades. We conclude that the ability to associate with multiple symbiont clades is common in scleractinian (stony) corals, and that, in coral-algal symbiosis, 'specificity' and 'flexibility' are relative terms: specificity is rarely absolute. The potential for reef corals to adapt or acclimatize to environmental change via symbiont community shifts may therefore be more phylogenetically widespread than has previously been assumed.

  6. Measuring Cellular-scale Nutrient Distribution in Algal Biofilms with Synchrotron Confocal Infrared Microspectroscopy

    SciTech Connect

    J Murdock; W Dodds; J Reffner; D Wetzel

    2011-12-31

    The microscope and infrared spectrometer are two of the most useful tools for the study of biological materials, and their combined analytical power far exceeds the sum of the two. Performing molecular spectroscopy through a microscope superimposes chemical information onto the physical microstructure obtained from the optical microscope when visible and infrared information are collected under the same conditions. The instrument developments that enable current infrared microspectroscopic studies began with the introduction of the first research-grade infrared microscope, patented in 1989 (1). By 1993, published reports using this method to determine macroalgae (seaweed) cell-wall composition appeared (2-4). Since these initial reports, the use of infrared microspectroscopy (IMS) in microalgal (single cells or groups of cells) research has grown. Primarily, cultured algae have been used to hone IMS methodology and evaluate its capabilities in algal research (5-8). Studies involving natural, mixed species assemblages, which can utilize the spatial resolution potential of this technique fully are rare (9-11). For instance, in a recent review of IMS microalgal ecological research (12), only 3 of the 29 peer-reviewed publications investigated natural algal assemblages. Both thermal and synchrotron infrared sources provide a resolution capable of measuring individual algae in mixed species assemblages, and each has its advantages. For example, thermal source IMS is more accessible, allowing more samples to be analyzed than synchrotron IMS. However, synchrotron IMS with confocal masking provides superior resolution, which can be critical in isolating small or contiguous cells. Algal ecology is the study of the interaction between algae and their environment. Infrared microspectroscopy addresses a major logistical problem in this field, obtaining species-specific cellular biochemical information from natural, mixed-species assemblages (11,12). Benthic (bottom

  7. Temporal and Spatial Dynamics of Tree Species Composition in Temperate Mountains of South Korea

    NASA Astrophysics Data System (ADS)

    Lee, Boknam; Park, Juhan; Cho, Sungsik; Ryu, Daun; Zaw Wynn, Khine; Park, Minji; Cho, Sunhee; Yoon, Jongguk; Park, Jongyoung; Kim, Hyun Seok

    2015-04-01

    Long term studies on vegetation dynamics are important to identify changes of ecosystem-level responses to climate change. To learn how tree species composition and stand structure change across temperate mountains, the temporal and spatial variations in tree species diversity and structure were investigated using the species composition and DBH size collected over the fourteen-year period across 134 sites in Jiri and Baekoon Mountains, South Korea. The overall temporal changes over fourteen years showed significant increase in stand density, species diversity and evenness according to the indices of Shannon-Weiner diversity, Bray-Curtis dissimilarity, and Pielou's evenness, contributing to the increase of basal area and biomass growth. The change of tree species composition could be categorized into five species communities, representing gradual increase or decrease, establishment, extinction, fluctuation of species population. However, in general, the change in species composition appeared to have consistent and directional patterns of increase in the annual rate of change in the mean species traits including species richness, pole growth rate, adult growth rate, and adult stature with five common dominant species (Quercus mongolica, Quercus variabilis, Quercus serrata, Carpinus laxiflora, and Styrax japonicus). The spatial patterns of species composition appeared to have a higher stand density and species diversity along with the low latitude and high slope ecosystem. The climate change was another main driver to vary the distribution of species abundance. Overall, both temporal and spatial changes of composition in tree species community was clear and further analysis to clarify the reasons for such fast and species-specific changes is underway especially to separate the effect of successional change and climate change. Keywords species composition; climate change; temporal and spatial variation ; forest structure; temperate forest

  8. Urban wastewater treatment by seven species of microalgae and an algal bloom: Biomass production, N and P removal kinetics and harvestability.

    PubMed

    Mennaa, Fatima Zahra; Arbib, Zouhayr; Perales, José Antonio

    2015-10-15

    This study evaluates the capacity of seven species and a Bloom of microalgae to grow in urban wastewater. Nutrient removal kinetics and biomass harvesting by means of centrifugation and coagulation-flocculation-sedimentation have been also tested. Results show that the best biomass productivities ranged from between 118 and 108 mgSS L(-1) d(-1) for the Bloom (Bl) and Scenedesmus obliquus (Sco). Regarding nutrient removal, microalgae were able to remove the total dissolved phosphorus and nitrogen concentrations by more than 80% and 87% respectively, depending on the species tested. The final total dissolved concentration of nitrogen and phosphorus in the culture media complies with the European Commission Directive 98/15/CE on urban wastewater treatment. Regarding harvesting, the results of coagulation-flocculation sedimentation using a 60 mg L(-1) dose of Ferric chloride were similar between species, exceeding the biomass removal efficiency by more than 90%. The results of centrifugation (time required to remove 90% of solids at 1000 rpm) were not similar between species, with the shortest time being 2.9 min for Sco, followed by the bloom (7.25 min). An overall analysis suggested that the natural bloom and Scenedesmus obliquus seem to be the best candidates to grow in pre-treated wastewater, according to their biomass production, nutrient removal capability and harvestability.

  9. Changes in Species Richness and Composition of Tiger Moths (Lepidoptera: Erebidae: Arctiinae) among Three Neotropical Ecoregions

    PubMed Central

    Beccacece, Hernán Mario; Zeballos, Sebastián Rodolfo; Zapata, Adriana Inés

    2016-01-01

    Paraná, Yungas and Chaco Serrano ecoregions are among the most species-rich terrestrial habitats at higher latitude. However, the information for tiger moths, one of the most speciose groups of moths, is unknown in these ecoregions. In this study, we assess their species richness and composition in all three of these ecoregions. Also we investigated whether the species composition of tiger moths is influenced by climatic factors and altitude. Tiger moth species were obtained with samples from 71 sites using standardized protocols (21 sites were in Yungas, 19 in Paraná and 31 in Chaco Serrano). Rarefaction-extrapolation curves, non-parametric estimators for incidence and sample coverage indices were performed to assess species richness in the ecoregions studied. Non metric multidimensional scaling and adonis tests were performed to compare the species composition of tiger moths among ecoregions. Permutest analysis and Pearson correlation were used to evaluate the relationship among species composition and annual mean temperature, annual temperature range, annual precipitation, precipitation seasonality and altitude. Among ecoregions Paraná was the richest with 125 species, followed by Yungas with 63 species and Chaco Serrano with 24 species. Species composition differed among these ecoregions, although Yungas and Chaco Serrano were more similar than Paraná. Species composition was significantly influenced by climatic factors and altitude. This study showed that species richness and species composition of tiger moths differed among the three ecoregions assessed. Furthermore, not only climatic factors and altitude influence the species composition of tiger moths among ecoregions, but also climatic seasonality at higher latitude in Neotropical South America becomes an important factor. PMID:27681478

  10. Strong interactions between stoichiometric constraints and algal defenses: evidence from population dynamics of Daphnia and algae in phosphorus-limited microcosms.

    PubMed

    DeMott, William R; Van Donk, Ellen

    2013-01-01

    The dynamic interactions among nutrients, algae and grazers were tested in a 2 × 3 factorial microcosm experiment that manipulated grazers (Daphnia present or absent) and algal composition (single species cultures and mixtures of an undefended and a digestion-resistant green alga). The experiment was run for 25 days in 10-L carboys under mesotrophic conditions that quickly led to strong phosphorus limitation of algal growth (TP is approximately equal to 0.5 μM, N:P 40:1). Four-day Daphnia juvenile growth assays tested for Daphnia P-limitation and nutrient-dependent or grazer-induced algal defenses. The maximal algal growth rate of undefended Ankistrodesmus (mean ± SE for three replicate microcosms; 0.92 ± 0.02 day(-1)) was higher than for defended Oocystis (0.62 ± 0.03 day(-1)), but by day 6, algal growth was strongly P-limited in all six treatments (molar C:P ratio >900). The P-deficient algae were poor quality resources in all three algal treatments. However, Daphnia population growth, reproduction, and survival were much lower in the digestion-resistant treatment even though growth assays provided evidence for Daphnia P-limitation in only the undefended and mixed treatments. Growth assays provided little or no support for simple threshold element ratio (TER) models that fail to consider algae defenses that result in viable gut passage. Our results show that strong P-limitation of algal growth enhances the defenses of a digestion-resistant alga, favoring high abundance of well-defended algae and energy limitation of zooplankton growth.

  11. Algal diseases: spotlight on a black box.

    PubMed

    Gachon, Claire M M; Sime-Ngando, Télesphore; Strittmatter, Martina; Chambouvet, Aurélie; Kim, Gwang Hoon

    2010-11-01

    Like any other living organisms, algae are plagued by diseases caused by fungi, protists, bacteria or viruses. As aquaculture continues to rise worldwide, pathogens of nori or biofuel sources are becoming a significant economic burden. Parasites are also increasingly being considered of equal importance with predators for ecosystem functioning. Altered disease patterns in disturbed environments are blamed for sudden extinctions, regime shifts, and spreading of alien species. Here we review the biodiversity and impact of pathogens and parasites of aquatic primary producers in freshwater and marine systems. We also cover recent advances on algal defence reactions, and discuss how emerging technologies can be used to reassess the profound, multi-faceted, and so far broadly-overlooked influence of algal diseases on ecosystem properties.

  12. TEMPERATURE AND MANGANESE AS DETERMINING FACTORS IN THE PRESENCE OF DIATOM OR BLUE-GREEN ALGAL FLORAS IN STREAMS*

    PubMed Central

    Patrick, Ruth; Crum, Bowman; Coles, John

    1969-01-01

    Diatoms are usually the major component of the algal flora in many streams, although green and blue-green algae may be present. These experiments were designed to determine if high temperature or a shift in the chemical composition of the water might bring about a dominance of blue-green algae and/or green algae rather than a dominance of diatoms in the algal flora. The results of these experiments indicate that an average temperature of 34° to 38°C results in a shift of dominance in the algal flora from diatoms to blue-green algae. Furthermore, a blue-green and green algal flora of species typically found in organically polluted water in favored if the manganese content is a few parts per billion. If the manganese content averaged 0.02-0.043 mg/liter in the natural stream to 0.04-0.28 mg/liter in the recycled water experiment, a diatom flora remained dominant. PMID:16591790

  13. Interaction between local hydrodynamics and algal community in epilithic biofilm.

    PubMed

    Graba, Myriam; Sauvage, Sabine; Moulin, Frédéric Y; Urrea, Gemma; Sabater, Sergi; Sanchez-Pérez, José Miguel

    2013-05-01

    Interactions between epilithic biofilm and local hydrodynamics were investigated in an experimental flume. Epilithic biofilm from a natural river was grown over a 41-day period in three sections with different flow velocities (0.10, 0.25 and 0.40 m s(-1) noted LV, IV and HV respectively). Friction velocities u* and boundary layer parameters were inferred from PIV measurement in the three sections and related to the biofilm structure. The results show that there were no significant differences in Dry Mass and Ash-Free Dry Mass (g m(-2)) at the end of experiment, but velocity is a selective factor in algal composition and the biofilms' morphology differed according to differences in water velocity. A hierarchical agglomerative cluster analysis (Bray-Curtis distances) and an Indicator Species Analysis (IndVal) showed that the indicator taxa were Fragilaria capucina var. mesolepta in the low-velocity (u*. = 0.010-0.012 m s(-1)), Navicula atomus, Navicula capitatoradiata and Nitzschia frustulum in the intermediate-velocity (u*. = 0.023-0.030 m s(-1)) and Amphora pediculus, Cymbella proxima, Fragilaria capucina var. vaucheriae and Surirella angusta in the high-velocity (u*. = 0.033-0.050 m s(-1)) sections. A sloughing test was performed on 40-day-old biofilms in order to study the resistance of epilithic biofilms to higher hydrodynamic regimes. The results showed an inverse relationship between the proportion of detached biomass and the average value of friction velocity during growth. Therefore, water velocity during epilithic biofilm growth conditioned the structure and algal composition of biofilm, as well as its response (ability to resist) to higher shear stresses. This result should be considered in modelling epilithic biofilm dynamics in streams subject to a variable hydrodynamics regime.

  14. Sugar composition of the pectic polysaccharides of charophytes, the closest algal relatives of land-plants: presence of 3-O-methyl-d-galactose residues

    PubMed Central

    O’Rourke, Christina; Gregson, Timothy; Murray, Lorna; Sadler, Ian H.; Fry, Stephen C.

    2015-01-01

    Background and Aims During evolution, plants have acquired and/or lost diverse sugar residues as cell-wall constituents. Of particular interest are primordial cell-wall features that existed, and in some cases abruptly changed, during the momentous step whereby land-plants arose from charophytic algal ancestors. Methods Polysaccharides were extracted from four charophyte orders [Chlorokybales (Chlorokybus atmophyticus), Klebsormidiales (Klebsormidium fluitans, K. subtile), Charales (Chara vulgaris, Nitella flexilis), Coleochaetales (Coleochaete scutata)] and an early-diverging land-plant (Anthoceros agrestis). ‘Pectins’ and ‘hemicelluloses’, operationally defined as extractable in oxalate (100 °C) and 6 m NaOH (37 °C), respectively, were acid- or Driselase-hydrolysed, and the monosaccharides analysed chromatographically. One unusual monosaccharide, ‘U’, was characterized by 1H/13C-nuclear magnetic resonance spectroscopy and also enzymically. Key Results ‘U’ was identified as 3-O-methyl-d-galactose (3-MeGal). All pectins, except in Klebsormidium, contained acid- and Driselase-releasable galacturonate, suggesting homogalacturonan. All pectins, without exception, released rhamnose and galactose on acid hydrolysis; however, only in ‘higher’ charophytes (Charales, Coleochaetales) and Anthoceros were these sugars also efficiently released by Driselase, suggesting rhamnogalacturonan-I. Pectins of ‘higher’ charophytes, especially Chara, contained little arabinose, instead possessing 3-MeGal. Anthoceros hemicelluloses were rich in glucose, xylose, galactose and arabinose (suggesting xyloglucan and arabinoxylan), none of which was consistently present in charophyte hemicelluloses. Conclusions Homogalacturonan is an ancient streptophyte feature, albeit secondarily lost in Klebsormidium. When conquering the land, the first embryophytes already possessed rhamnogalacturonan-I. In contrast, charophyte and land-plant hemicelluloses differ

  15. Addressing the challenges for sustainable production of algal biofuels: I. Algal strains and nutrient supply.

    PubMed

    Abdelaziz, Ahmed E M; Leite, Gustavo B; Hallenbeck, Patrick C

    2013-01-01

    Microalgae hold promise for the production of sustainable replacement of fossil fuels due to their high growth rates, ability to grow on non-arable land and their high content, under the proper conditions, of high energy compounds that can be relatively easily chemically converted to fuels using existing technology. However, projected large-scale algal production raises a number of sustainability concerns concerning land use, net energy return, water use and nutrient supply. The state-of-the-art of algal production of biofuels is presented with emphasis on some possible avenues to provide answers to the sustainability questions that have been raised. Here, issues concerning algal strains and supply of nutrients for large-scale production are discussed. Since sustainability concerns necessitate the use of wastewaters for supply of bulk nutrients, emphasis is placed on the composition and suitability of different wastewater streams. At the same time, algal cultivation has proven useful in waste treatment processes, and thus this aspect is also treated in some detail.

  16. Lipids of recently-deposited algal mats at Laguna Mormona, Baja California

    NASA Technical Reports Server (NTRS)

    Cardoso, J.; Brooks, P. W.; Eglinton, G.; Goodfellow, R.; Maxwell, J. R.; Philp, R. P.

    1976-01-01

    A preliminary survey of the lipid composition of the core of a recently deposited algal mat of a subtropical, hypersaline coastal pond is described. Two layers of the core were examined: the upper, 2-cm-thick layer, comprising the fresh algal mat of predominantly the blue-green species Microcoleus chthonoplastes, and the black anaerobic algal ooze at a depth of 10 cm. About 75% of the n-alkanes in the mat were accounted for by n-C17, with smaller amounts of higher homologues maximizing at n-C27. The ooze was characterized by a bimodal distribution with maxima at n-C17 and n-C27. The n-alkanoic acids distributions were similar to the corresponding n-alkane distributions. A marked decrease in the ratio of monounsaturated to saturated acids in the ooze relative to the mat was observed, which indicates a preferential removal of unsaturated components. Certain triterpenes of the hopane skeletal type were present in the mat and ooze. The presence of stanols and sterenes in the ooze with similar carbon number distributions suggests a relationship between them.

  17. Living in biological soil crust communities of African deserts-Physiological traits of green algal Klebsormidium species (Streptophyta) to cope with desiccation, light and temperature gradients.

    PubMed

    Karsten, Ulf; Herburger, Klaus; Holzinger, Andreas

    2016-05-01

    Green algae of the genus Klebsormidium (Klebsormidiales, Streptophyta) are typical members of biological soil crusts (BSCs) worldwide. The phylogeny and ecophysiology of Klebsormidium has been intensively studied in recent years, and a new lineage called superclade G, which was isolated from BSCs in arid southern Africa and comprising undescribed species, was reported. Three different African strains, that have previously been isolated from hot-desert BSCs and molecular-taxonomically characterized, were comparatively investigated. In addition, Klebsormidium subtilissimum from a cold-desert habitat (Alaska, USA, superclade E) was included in the study as well. Photosynthetic performance was measured under different controlled abiotic conditions, including dehydration and rehydration, as well as under a light and temperature gradient. All Klebsormidium strains exhibited optimum photosynthetic oxygen production at low photon fluence rates, but with no indication of photoinhibition under high light conditions pointing to flexible acclimation mechanisms of the photosynthetic apparatus. Respiration under lower temperatures was generally much less effective than photosynthesis, while the opposite was true for higher temperatures. The Klebsormidium strains tested showed a decrease and inhibition of the effective quantum yield during desiccation, however with different kinetics. While the single celled and small filamentous strains exhibited relatively fast inhibition, the uniserate filament forming isolates desiccated slower. Except one, all other strains fully recovered effective quantum yield after rehydration. The presented data provide an explanation for the regular occurrence of Klebsormidium strains or species in hot and cold deserts, which are characterized by low water availability and other stressful conditions.

  18. Living in biological soil crust communities of African deserts—Physiological traits of green algal Klebsormidium species (Streptophyta) to cope with desiccation, light and temperature gradients

    PubMed Central

    Karsten, Ulf; Herburger, Klaus; Holzinger, Andreas

    2015-01-01

    Green algae of the genus Klebsormidium (Klebsormidiales, Streptophyta) are typical members of biological soil crusts (BSCs) worldwide. The phylogeny and ecophysiology of Klebsormidium has been intensively studied in recent years, and a new lineage called superclade G, which was isolated from BSCs in arid southern Africa and comprising undescribed species, was reported. Three different African strains, that have previously been isolated from hot-desert BSCs and molecular-taxonomically characterized, were comparatively investigated. In addition, Klebsormidium subtilissimum from a cold-desert habitat (Alaska, USA, superclade E) was included in the study as well. Photosynthetic performance was measured under different controlled abiotic conditions, including dehydration and rehydration, as well as under a light and temperature gradient. All Klebsormidium strains exhibited optimum photosynthetic oxygen production at low photon fluence rates, but with no indication of photoinhibition under high light conditions pointing to flexible acclimation mechanisms of the photosynthetic apparatus. Respiration under lower temperatures was generally much less effective than photosynthesis, while the opposite was true for higher temperatures. The Klebsormidium strains tested showed a decrease and inhibition of the effective quantum yield during desiccation, however with different kinetics. While the single celled and small filamentous strains exhibited relatively fast inhibition, the uniserate filament forming isolates desiccated slower. Except one, all other strains fully recovered effective quantum yield after rehydration. The presented data provide an explanation for the regular occurrence of Klebsormidium strains or species in hot and cold deserts, which are characterized by low water availability and other stressful conditions. PMID:26422081

  19. Algal Culture Material

    ERIC Educational Resources Information Center

    Baldock, R.

    1971-01-01

    Suggests suitable species of microscopic green algae for demonstrating diversity of form, increasing complexity in related species, the animal" and plant" characteristics of protists, and protist behavior. (AL)

  20. Species composition of Black Sea marine planktonic copepods

    NASA Astrophysics Data System (ADS)

    Gubanova, A.; Altukhov, D.; Stefanova, K.; Arashkevich, E.; Kamburska, L.; Prusova, I.; Svetlichny, L.; Timofte, F.; Uysal, Z.

    2014-07-01

    This paper reviews the changes in the marine planktonic copepods of the Black Sea species' list from the beginning of taxonomic research to the present day. The study was based on the SESAME biological database, unpublished data, literature and data obtained during the course of the SESAME project. Comparisons were made with the Guidebook for Marine Fauna of the Black Sea and the Sea of Azov, which revealed changes both in the taxonomic status of some species and in the structure of the copepod community. The taxonomic status of two species (Acartia clausi small form and Centropages kroyeri pontica) and the nomenclature of two species (Oihona minuta and Calanus helgolandicus) have been changed. Three native species (Acartia margalefi, Oithona nana, and Paracartia latisetosa) have disappeared. Two non-indigenous copepods (Acartia tonsa and Oithona davisae) became established in the Black Sea ecosystem in the 1970s and 2000s, respectively. The success of their establishment was determined by biological features of the species and vulnerability of the native copepod community to invasions. It is highly probable that both species were introduced to the Black Sea by vessel ballast water. The hypothesis of "mediterranization" of the Black Sea fauna does not appear to hold true for zooplankton. Numerous claims of alien copepod species in the Black Sea remain largely unverified due to insufficient information. Data on newly discovered species of the Acartia genus are not authenticated. An updated list of marine planktonic copepods of the Black Sea is hereby presented.

  1. Algal Biofuels; Algal Biofuels R&D at NREL (Brochure)

    SciTech Connect

    Not Available

    2010-09-01

    An overview of NREL's algal biofuels projects, including U.S. Department of Energy-funded work, projects with U.S. and international partners, and Laboratory Directed Research and Development projects.

  2. Ecosystem consequences of species richness and composition in pond food webs.

    PubMed

    Downing, Amy L; Leibold, Mathew A

    2002-04-25

    Resolving current concerns about the role of biodiversity on ecosystems calls for understanding the separate roles of changes in species numbers and of composition. Recent work shows that primary productivity often, but not always, saturates with species richness within single trophic levels. However, any interpretation of such patterns must consider that variation in biodiversity is necessarily associated with changes in species composition (identity), and that changes in biodiversity often occur across multiple trophic levels. Here we present results from a mesocosm experiment in which we independently manipulated species richness and species composition across multiple trophic levels in pond food webs. In contrast to previous studies that focused on single trophic levels, we found that productivity is either idiosyncratic or increases with respect to species richness, and that richness influences trophic structure. However, the composition of species within richness levels can have equally or more marked effects on ecosystems than average effects of richness per se. Indirect evidence suggests that richness and associated changes in species composition affect ecosystem attributes through indirect effects and trophic interactions among species, features that are highly characteristic of natural, complex ecosystems.

  3. Potency of (doped) rare earth oxide particles and their constituent metals to inhibit algal growth and induce direct toxic effects.

    PubMed

    Joonas, Elise; Aruoja, Villem; Olli, Kalle; Syvertsen-Wiig, Guttorm; Vija, Heiki; Kahru, Anne

    2017-03-27

    Use of rare earth elements (REEs) has increased rapidly in recent decades due to technological advances. It has been accompanied by recurring rare earth element anomalies in water bodies. In this work we (i) studied the effects of eight novel doped and one non-doped rare earth oxide (REO) particles (aimed to be used in solid oxide fuel cells and gas separation membranes) on algae, (ii) quantified the individual adverse effects of the elements that constitute the (doped) REO particles and (iii) attempted to find a discernible pattern to relate REO particle physicochemical characteristics to algal growth inhibitory properties. Green algae Raphidocelis subcapitata (formerly Pseudokirchneriella subcapitata) were used as a test species in two different formats: a standard OECD201 algal growth inhibition assay and the algal viability assay (a 'spot test') that avoids nutrient removal effects. In the 24h 'spot' test that demonstrated direct toxicity, algae were not viable at REE concentrations above 1mgmetal/L. 72-hour algal growth inhibition EC50 values for four REE salts (Ce, Gd, La, Pr) were between 1.2 and 1.4mg/L, whereas the EC50 for REO particles ranged from 1 to 98mg/L. The growth inhibition of REEs was presumably the result of nutrient sequestration from the algal growth medium. The adverse effects of REO particles were at least in part due to the entrapment of algae within particle agglomerates. Adverse effects due to the dissolution of constituent elements from (doped) REO particles and the size or specific surface area of particles were excluded, except for La2NiO4. However, the structure of the particles and/or the varying effects of oxide composition might have played a role in the observed effects. As the production rates of these REO particles are negligible compared to other forms of REEs, there is presumably no acute risk for aquatic unicellular algae.

  4. Fueling Future with Algal Genomics

    SciTech Connect

    Grigoriev, Igor

    2012-07-05

    Algae constitute a major component of fundamental eukaryotic diversity, play profound roles in the carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world in algal genome sequencing (http://jgi.doe.gov/Algae) and contributes of the algal genome projects worldwide (GOLD database, 2012). The sequenced algal genomes offer catalogs of genes, networks, and pathways. The sequenced first of its kind genomes of a haptophyte E.huxleyii, chlorarachniophyte B.natans, and cryptophyte G.theta fill the gaps in the eukaryotic tree of life and carry unique genes and pathways as well as molecular fossils of secondary endosymbiosis. Natural adaptation to conditions critical for industrial production is encoded in algal genomes, for example, growth of A.anophagefferens at very high cell densities during the harmful algae blooms or a global distribution across diverse environments of E.huxleyii, able to live on sparse nutrients due to its expanded pan-genome. Communications and signaling pathways can be derived from simple symbiotic systems like lichens or complex marine algae metagenomes. Collectively these datasets derived from algal genomics contribute to building a comprehensive parts list essential for algal biofuel development.

  5. Detection of surface algal blooms using the newly developed algorithm surface algal bloom index (SABI)

    NASA Astrophysics Data System (ADS)

    Alawadi, Fahad

    2010-10-01

    Quantifying ocean colour properties has evolved over the past two decades from being able to merely detect their biological activity to the ability to estimate chlorophyll concentration using optical satellite sensors like MODIS and MERIS. The production of chlorophyll spatial distribution maps is a good indicator of plankton biomass (primary production) and is useful for the tracing of oceanographic currents, jets and blooms, including harmful algal blooms (HABs). Depending on the type of HABs involved and the environmental conditions, if their concentration rises above a critical threshold, it can impact the flora and fauna of the aquatic habitat through the introduction of the so called "red tide" phenomenon. The estimation of chlorophyll concentration is derived from quantifying the spectral relationship between the blue and the green bands reflected from the water column. This spectral relationship is employed in the standard ocean colour chlorophyll-a (Chlor-a) product, but is incapable of detecting certain macro-algal species that float near to or at the water surface in the form of dense filaments or mats. The ability to accurately identify algal formations that sometimes appear as oil spill look-alikes in satellite imagery, contributes towards the reduction of false-positive incidents arising from oil spill monitoring operations. Such algal formations that occur in relatively high concentrations may experience, as in land vegetation, what is known as the "red-edge" effect. This phenomena occurs at the highest reflectance slope between the maximum absorption in the red due to the surrounding ocean water and the maximum reflectance in the infra-red due to the photosynthetic pigments present in the surface algae. A new algorithm termed the surface algal bloom index (SABI), has been proposed to delineate the spatial distributions of floating micro-algal species like for example cyanobacteria or exposed inter-tidal vegetation like seagrass. This algorithm was

  6. [Comparative analysis of sea-ice diatom species composition in the seas of Russian Arctic].

    PubMed

    Il'iash, L V; Zhitina, L S

    2009-01-01

    Comparative analysis of species composition of ice diatom algae (IDA) of the White, Barents, Kara, Laptev, East Siberian, Chukchi Seas and the Basin of the Arctic Ocean was conducted on the basis of both original and published data. Species composition of IDA counts 567 taxa including 122 centric and 446 pennate diatoms. The freshwater algae composed about 18% of the total species number. In the White Sea, IDA were the most numerous (272 taxa), in the Kara Sea they are the least numerous (57 taxa). The species compositions in different seas differ significantly from each other. Similarity of IDA was consistent with the Arctic Ocean circulation and ice drift. IDA of Chukchi, East Siberian and Laptev Seas are the most similar, as are IDA of White and Kara Seas. Similarity of IDA of Chukchi Sea to those of other seas decrease in the west direction. IDA species differences between regions within one sea could be greater than those between different seas.

  7. Water-quality and algal conditions in the Clackamas River basin, Oregon, and their relations to land and water management

    USGS Publications Warehouse

    Carpenter, Kurt D.

    2003-01-01

    In 1998, the U.S. Geological Survey sampled the Clackamas River, its major tributaries, and reservoirs to characterize basic water quality (nutrients, dissolved oxygen, pH, temperature, and conductance), water quantity (water sources within the basin), and algal conditions (biomass and species composition). Sampling locations reflected the dominant land uses in the basin (forest management, agriculture, and urban development) as well as the influence of hydroelectric projects, to examine how these human influences might be affecting water quality and algal conditions. Nuisance algal growths, with accompanying negative effects on water quality, were observed at several locations in the basin during this study. Algal biomass in the lower Clackamas River reached a maximum of 300 mg/m2 chlorophyll a, producing nuisance algal conditions, including fouled stream channels and daily fluctuations in pH and dissolved oxygen concentrations to levels that did not meet water-quality standards. Algal biomass was highest at sites immediately downstream from the hydroelectric project's reservoirs and/or powerhouses. Nuisance algal conditions also were observed in some of the tributaries, including the North Fork of the Clackamas River, Clear Creek, Rock Creek, and Sieben Creek. High amounts of drifting algae increased turbidity levels in the Clackamas River during June, which coincided with a general increase in the concentration of disinfection by-products found in treated Clackamas River water used for drinking, presumably due to the greater amounts of organic matter in the river. The highest nutrient concentrations were found in the four lowermost tributaries (Deep, Richardson, Rock, and Sieben Creeks), where most of the agriculture and urban development is concentrated. Of these, the greatest load of nutrients came from Deep Creek, which had both high nutrient concentrations and relatively high streamflow. Streams draining forestland in the upper basin (upper Clackamas River

  8. Enantiomeric composition studies in Lavandula species using supercritical fluids.

    PubMed

    Flores, Gema; Blanch, Gracia Patricia; Ruiz del Castillo, Maria Luisa; Herraiz, Marta

    2005-11-01

    Characteristic aroma compounds in plants and essential oils of Lavandula from different varieties were examined. The study of the qualitative and quantitative composition of the major volatile components was faced by developing a method based on the use of supercritical fluid extraction-GC-MS (SFE-GC-MS). The optimization of a variety of parameters affecting SFE extraction enabled RSDs from three replicates lower than 2% to be achieved. Equally, recoveries of up to 59% were obtained by applying the proposed method. The use of multidimensional GC was necessary to enantiomerically resolve the target compounds. The obtained results showed enantiomeric purities >90% for all studied compounds in all varieties considered, proving the natural invariability of the enantiomeric composition of the compounds of interest. This information can be useful in authenticity studies as well as in selecting natural sources of enantiomerically pure compounds.

  9. Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species.

    PubMed

    Di Giallonardo, Francesca; Schlub, Timothy E; Shi, Mang; Holmes, Edward C

    2017-04-15

    Viruses use the cellular machinery of their hosts for replication. It has therefore been proposed that the nucleotide and dinucleotide compositions of viruses should match those of their host species. If this is upheld, it may then be possible to use dinucleotide composition to predict the true host species of viruses sampled in metagenomic surveys. However, it is also clear that different taxonomic groups of viruses tend to have distinctive patterns of dinucleotide composition that may be independent of host species. To determine the relative strength of the effect of host versus virus family in shaping dinucleotide composition, we performed a comparative analysis of 20 RNA virus families from 15 host groupings, spanning two animal phyla and more than 900 virus species. In particular, we determined the odds ratios for the 16 possible dinucleotides and performed a discriminant analysis to evaluate the capability of virus dinucleotide composition to predict the correct virus family or host taxon from which it was isolated. Notably, while 81% of the data analyzed here were predicted to the correct virus family, only 62% of these data were predicted to their correct subphylum/class host and a mere 32% to their correct mammalian order. Similarly, dinucleotide composition has a weak predictive power for different hosts within individual virus families. We therefore conclude that dinucleotide composition is generally uniform within a virus family but less well reflects that of its host species. This has obvious implications for attempts to accurately predict host species from virus genome sequences alone.IMPORTANCE Determining the processes that shape virus genomes is central to understanding virus evolution and emergence. One question of particular importance is why nucleotide and dinucleotide frequencies differ so markedly between viruses. In particular, it is currently unclear whether host species or virus family has the biggest impact on dinucleotide frequencies and

  10. Historical factors shaped species diversity and composition of Salix in eastern Asia

    NASA Astrophysics Data System (ADS)

    Wang, Qinggang; Su, Xiangyan; Shrestha, Nawal; Liu, Yunpeng; Wang, Siyang; Xu, Xiaoting; Wang, Zhiheng

    2017-02-01

    Ambient energy, niche conservatism, historical climate stability and habitat heterogeneity hypothesis have been proposed to explain the broad-scale species diversity patterns and species compositions, while their relative importance have been controversial. Here, we assessed the relative contributions of contemporary climate, historical climate changes and habitat heterogeneity in shaping Salix species diversity and species composition in whole eastern Asia as well as mountains and lowlands using linear regressions and distance-based redundancy analyses, respectively. Salix diversity was negatively related with mean annual temperature. Habitat heterogeneity was more important than contemporary climate in shaping Salix diversity patterns, and their relative contributions were different in mountains and lowlands. In contrast, the species composition was strongly influenced by contemporary climate and historical climate change than habitat heterogeneity, and their relative contributions were nearly the same both in mountains and lowlands. Our findings supported niche conservatism and habitat heterogeneity hypotheses, but did not support ambient energy and historical climate stability hypotheses. The diversity pattern and species composition of Salix could not be well-explained by any single hypothesis tested, suggesting that other factors such as disturbance history and diversification rate may be also important in shaping the diversity pattern and composition of Salix species.

  11. Historical factors shaped species diversity and composition of Salix in eastern Asia.

    PubMed

    Wang, Qinggang; Su, Xiangyan; Shrestha, Nawal; Liu, Yunpeng; Wang, Siyang; Xu, Xiaoting; Wang, Zhiheng

    2017-02-08

    Ambient energy, niche conservatism, historical climate stability and habitat heterogeneity hypothesis have been proposed to explain the broad-scale species diversity patterns and species compositions, while their relative importance have been controversial. Here, we assessed the relative contributions of contemporary climate, historical climate changes and habitat heterogeneity in shaping Salix species diversity and species composition in whole eastern Asia as well as mountains and lowlands using linear regressions and distance-based redundancy analyses, respectively. Salix diversity was negatively related with mean annual temperature. Habitat heterogeneity was more important than contemporary climate in shaping Salix diversity patterns, and their relative contributions were different in mountains and lowlands. In contrast, the species composition was strongly influenced by contemporary climate and historical climate change than habitat heterogeneity, and their relative contributions were nearly the same both in mountains and lowlands. Our findings supported niche conservatism and habitat heterogeneity hypotheses, but did not support ambient energy and historical climate stability hypotheses. The diversity pattern and species composition of Salix could not be well-explained by any single hypothesis tested, suggesting that other factors such as disturbance history and diversification rate may be also important in shaping the diversity pattern and composition of Salix species.

  12. Historical factors shaped species diversity and composition of Salix in eastern Asia

    PubMed Central

    Wang, Qinggang; Su, Xiangyan; Shrestha, Nawal; Liu, Yunpeng; Wang, Siyang; Xu, Xiaoting; Wang, Zhiheng

    2017-01-01

    Ambient energy, niche conservatism, historical climate stability and habitat heterogeneity hypothesis have been proposed to explain the broad-scale species diversity patterns and species compositions, while their relative importance have been controversial. Here, we assessed the relative contributions of contemporary climate, historical climate changes and habitat heterogeneity in shaping Salix species diversity and species composition in whole eastern Asia as well as mountains and lowlands using linear regressions and distance-based redundancy analyses, respectively. Salix diversity was negatively related with mean annual temperature. Habitat heterogeneity was more important than contemporary climate in shaping Salix diversity patterns, and their relative contributions were different in mountains and lowlands. In contrast, the species composition was strongly influenced by contemporary climate and historical climate change than habitat heterogeneity, and their relative contributions were nearly the same both in mountains and lowlands. Our findings supported niche conservatism and habitat heterogeneity hypotheses, but did not support ambient energy and historical climate stability hypotheses. The diversity pattern and species composition of Salix could not be well-explained by any single hypothesis tested, suggesting that other factors such as disturbance history and diversification rate may be also important in shaping the diversity pattern and composition of Salix species. PMID:28176816

  13. Species composition and biomasses of fishes in tropical seagrasses at Groote Eylandt, northern Australia

    NASA Astrophysics Data System (ADS)

    Blaber, S. J. M.; Brewer, D. T.; Salini, J. P.; Kerr, J. D.; Conacher, C.

    1992-12-01

    The species composition and biomasses of fishes in the tropical seagrasses of Groote Eylandt, northern Australia, were studied in 1989 and 1990. A total of 156 species was recorded. Tall dense seagrass, short seagrass and control (no seagrass) sites in different depths were compared. Shallow (<1 m) sites were dominated by small resident species and juveniles of non-resident species, while deeper waters (to 7 m) were dominated by larger species. Species composition was not significantly different between sites, but species diversity ( H) and evenness ( E) were higher in non-vegetated areas. In slightly deeper water (<2 m) species composition was different between habitats and species diversity was highest in tall seagrass and least in open areas. Most species were more abundant in tall seagrass and least abundant in open areas. Most of the larger fishes, including 11 species of sharks, are piscivores, and most move into shallow sea-grass areas at night, irrespective of tide height. Only five species showed abundance patterns related to tide height and there were no significant seasonal patterns of abundance in any of the communities. The biomasses for all sites and sampling methods were mostly from 1 to 2 g m -2, which is low relative to other inshore tropical areas. The possible causes—the characteristics of adjacent habitats (coral reefs and mangroves) and the role of seagrasses in the life cycle of fishes are discussed. It is suggested that habitat structure is a major determinant of the species composition of fish in tropical seagrass areas, primarily because it affects food availability, both for small residents and juveniles, and for visiting predators.

  14. The role of light availability and herbivory on algal responses to nutrient enrichment in a riparian wetland, Alaska.

    PubMed

    Rober, Allison R; Stevenson, R Jan; Wyatt, Kevin H

    2015-06-01

    We investigated how the relative availability of solar radiation in the presence or absence of grazing alters the ability of benthic algae to respond to nutrient enrichment in an Alaskan marsh. We used a factorial mesocosm experiment that included nutrient enrichment (enriched or control), grazing (grazed or ungrazed), and light (unshaded or shaded) to simulate shading by macrophytes early and late in the growing season, respectively. We found stronger effects of grazers and nutrients compared to light on benthic algal biomass and taxonomic composition. Algal biomass increased in nutrient-enriched treatments and was reduced by grazing. Shading did not have an effect on algal biomass or taxonomic composition, but the concentration of chl a per algal biovolume increased with shading, demonstrating the ability of algae to compensate for changes in light availability. Algal taxonomic composition was more affected by grazer presence than nutrients or light. Grazer-resistant taxa (basal filaments of Stigeoclonium) were replaced by diatoms (Nitzschia) and filamentous green algae (Ulothrix) when herbivores were removed. The interacting and opposing influences of nutrients and grazing indicate that the algal community is under dual control from the bottom-up (nutrient limitation) and from the top-down (consumption by herbivores), although grazers had a stronger influence on algal biomass and taxonomic composition than nutrient enrichment. Our results suggest that low light availability will not inhibit the algal response to elevated nutrient concentrations expected with ongoing climate change, but grazers rapidly consume algae following enrichment, masking the effects of elevated nutrients on algal production.

  15. Species composition and abundance of Brevipalpus spp. on different citrus species in Mexican orchards.

    PubMed

    Salinas-Vargas, D; Santillán-Galicia, M T; Valdez-Carrasco, J; Mora-Aguilera, G; Atanacio-Serrano, Y; Romero-Pescador, P

    2013-08-01

    We studied the abundance of Brevipalpus spp. in citrus orchards in the Mexican states of Yucatan, Quintana Roo and Campeche. Mites were collected from 100 trees containing a mixture of citrus species where sweet orange was always the main species. Eight collections were made at each location from February 2010 to February 2011. Mites from the genus Brevipalpus were separated from other mites surveyed and their abundance and relationships with the different citrus species were quantified throughout the collection period. A subsample of 25% of the total Brevipalpus mites collected were identified to species level and the interaction of mite species and citrus species were described. Brevipalpus spp. were present on all collection dates and their relative abundance was similar on all citrus species studies. The smallest number of mites collected was during the rainy season. Brevipalpus phoenicis (Geijskes) and Brevipalpus californicus (Banks) were the only two species present and they were found in all locations except Campeche, where only B. phoenicis was present. Yucatan and Campeche are at greater risk of leprosis virus transmission than Quintana Roo because the main vector, B. phoenicis, was more abundant than B. californicus. The implications of our results for the design of more accurate sampling and control methods for Brevipalpus spp. are discussed.

  16. Species composition of Malassezia yeasts in dogs in Slovakia.

    PubMed

    Sihelská, Zuzana; Váczi, Peter; Conková, Eva

    2016-01-01

    Malassezia (M.) pachydermatis is the lipophilic yeast, which is normally present on the skin and in the ear canal of dogs but under certain conditions it may cause dermatitis and otitis. There is less known about the occurrence of lipid-dependent Malassezia species in dogs. The aim of this study was to detect whether lipid-dependent yeasts are part of the normal microflora in dogs. Two groups of animals were selected for comparison. The group of healthy dogs contained samples of 118 individuals and the group of dogs with cutaneous lesions or otitis externa comprised 328 dogs. The isolates of Malassezia were identified by using genotypic methods that allow the precise identification. M. pachydermatis was the most frequently isolated species in this study (121 isolates). Only four isolates were identified as M. furfur and one isolate was identified as M. nana.

  17. [Species composition and geographical distribution of threatened fishes in Yunnan Province of Southwest China].

    PubMed

    Zhang, Qian; Zhong, Jin-Xin

    2013-05-01

    Based on the related published papers, and by using Geographic Information System (ArcGIS 9.3), this paper analyzed the species composition and geographical distribution of threatened fishes in Yunnan Province of Southwest China. There were 83 threatened species living in the Province, belonging to 5 orders, 13 families, and 47 genera. Cypriniformes was absolutely dominant, with 64 species, followed by Siluriformes, with 16 species. Cyprinidae fishes had 51 species, accounting for 79.7% of Cypriniformes. The most species of Cyprinid fishes were of Barbinae (14 species), Cyprininae (10 species), and Cultrinae (10 species). The threatened fishes could be divided into two zoogeographical regions, i. e., Tibetan Plateau region and Oriental region, and their species composition and geographical distribution were resulted from the historical evolution adapted to the related environments. Whatever in rivers and in lakes, the Cyprinid fishes were both absolutely dominant, occupying 36.1% and 31.3% of the total, respectively. The Cyprinid fishes in rivers were mostly of endangered species, while those in lakes were mostly of vulnerable species. The factors affecting the threatened fishes in the Province were discussed from the two aspects of geodynamic evolution and present situation.

  18. Algal culture studies for CELSS

    NASA Technical Reports Server (NTRS)

    Radmer, R.; Behrens, P.; Arnett, K.; Gladue, R.; Cox, J.; Lieberman, D.

    1987-01-01

    Microalgae are well-suited as a component of a Closed Environmental Life Support System (CELSS), since they can couple the closely related functions of food production and atmospheric regeneration. The objective was to provide a basis for predicting the response of CELSS algal cultures, and thus the food supply and air regeneration system, to changes in the culture parameters. Scenedesmus growth was measured as a function of light intensity, and the spectral dependence of light absorption by the algae as well as algal respiration in the light were determined as a function of cell concentration. These results were used to test and confirm a mathematical model that describes the productivity of an algal culture in terms of the competing processes of photosynthesis and respiration. The relationship of algal productivity to cell concentration was determined at different carbon dioxide concentrations, temperatures, and light intensities. The maximum productivity achieved by an air-grown culture was found to be within 10% of the computed maximum productivity, indicating that CO2 was very efficiently removed from the gas stream by the algal culture. Measurements of biomass productivity as a function of cell concentration at different light intensities indicated that both the productivity and efficiency of light utilization were greater at higher light intensities.

  19. The megaepifauna of the Dogger Bank (North Sea): species composition and faunal characteristics 1991-2008

    NASA Astrophysics Data System (ADS)

    Sonnewald, Moritz; Türkay, Michael

    2012-03-01

    During a long-term study in the summer months of the years 1991-2008, 176 megaepifaunal species were recorded through a series of beam trawl surveys on a grid of fixed stations on the Dogger Bank (central North Sea). This paper gives a qualitative overview on species composition throughout the research period, determined from samples collected during 15 cruises. In recent years, a number of species with more oceanic distribution patterns (e.g. species from SW British coasts) has been collected. In spite of these newcomers, there was a slight decrease in total species numbers during the research period.

  20. Species composition of a soil invertebrate multi-species test system determines the level of ecotoxicity.

    PubMed

    Sechi, Valentina; D'Annibale, Alessandra; Maraldo, Kristine; Johansen, Anders; Bossi, Rossana; Jensen, John; Krogh, Paul Henning

    2014-01-01

    A soil multi-species, SMS, experimental test system consisting of the natural microbial community, five collembolan species and a predatory mite along with either Enchytraeus crypticus or the earthworm Eisenia fetida were exposed to α-cypermethrin. A comparison of the performance of these two types of SMSs is given to aid the development of a standard test system. E. fetida had a positive effect on the majority of the species, reducing the negative insecticide effect. E. fetida affected the species sensitivity and decreased the degradation of the insecticide due to the organic matter incorporation of earthworm food. After 8 weeks, the EC50 was 0.76 mg kg(-1) for enchytraeids and ranged between 2.7 and 18.9 mg kg(-1) for collembolans, more sensitive than previously observed with single species. Changes observed in the community structure and function illustrates the strength of a multi-species test system as an ecotoxicological tool compared to single species tests.

  1. Energy evaluation of algal cell disruption by high pressure homogenisation.

    PubMed

    Yap, Benjamin H J; Dumsday, Geoff J; Scales, Peter J; Martin, Gregory J O

    2015-05-01

    The energy consumption of high pressure homogenisation (HPH) was analysed to determine the feasibility of rupturing algal cells for biodiesel production. Experimentally, the processing capacity (i.e. flow rate), power draw and cell disruption efficiency of HPH were independent of feed concentration (for Nannochloropsis sp. up to 25%w/w solids). Depending on the homogenisation pressure (60-150 MPa), the solids concentration (0.25-25%w/w), and triacylglyceride (TAG) content of the harvested algal biomass (10-30%), the energy consumed by HPH represented between 6% and 110-times the energy density of the resulting biodiesel. Provided the right species (weak cell wall and high TAG content) is selected and the biomass is processed at a sufficiently high solids concentration, HPH can consume a small fraction of the energy content of the biodiesel produced. This study demonstrates the feasibility of process-scale algal cell disruption by HPH based on its energy requirement.

  2. Influences of forest structure, climate and species composition on tree mortality across the eastern US.

    PubMed

    Lines, Emily R; Coomes, David A; Purves, Drew W

    2010-10-13

    Few studies have quantified regional variation in tree mortality, or explored whether species compositional changes or within-species variation are responsible for regional patterns, despite the fact that mortality has direct effects on the dynamics of woody biomass, species composition, stand structure, wood production and forest response to climate change. Using bayesian analysis of over 430,000 tree records from a large eastern US forest database we characterised tree mortality as a function of climate, soils, species and size (stem diameter). We found (1) mortality is U-shaped vs. stem diameter for all 21 species examined; (2) mortality is hump-shaped vs. plot basal area for most species; (3) geographical variation in mortality is substantial, and correlated with several environmental factors; and (4) individual species vary substantially from the combined average in the nature and magnitude of their mortality responses to environmental variation. Regional variation in mortality is therefore the product of variation in species composition combined with highly varied mortality-environment correlations within species. The results imply that variation in mortality is a crucial part of variation in the forest carbon cycle, such that including this variation in models of the global carbon cycle could significantly narrow uncertainty in climate change predictions.

  3. Biochemical composition of three species of unionid mussels after emersion

    USGS Publications Warehouse

    Greseth, Shari L.; Cope, W.G.; Rada, R.G.; Waller, D.L.; Bartsch, M.R.

    2003-01-01

    Freshwater mussels are emersed (exposed to air) during conservation activities such as surveys and relocations. Success of these activities depends upon the ability of mussels to survive emersion and to re-burrow in the substratum. We evaluated the acute sublethal effects of emersion on three species of unionid mussels [pocketbook, Lampsilis cardium (Rafinesque, 1820); pimpleback, Quadrula pustulosa pustulosa (I. Lea, 1831); spike, Elliptio dilatata (Rafinesque, 1820)] by measuring three biochemicals (carbohydrate, lipid, protein) indicative of biochemical function and energy storage. Mussels were acclimated in water at 25??C and exposed to five air temperatures (15, 20, 25, 35 and 45??C) for 15, 30 and 60 min. After emersion, mussels were returned to water at 25??C and observed for 14 days. Samples of mantle tissue were taken after the 14-day postexposure period and analysed for carbohydrate, lipid and protein. Three-way analysis of variance (ANOVA) did not reveal consistent trends in carbohydrate, lipid or protein concentrations due to sex of mussels, duration of emersion, air temperature or their interaction terms that indicated biological compensation to stress. Overall mean carbohydrate concentrations were greatest (range 447-615 mg/g dry wt) among the species, followed by protein (179-289 mg/g dry wt) and lipids (26.7-38.1 mg/g dry wt). These results have positive implications for conducting conservation activities, because emersion over the range of temperatures (15-35??C) and durations (15-60 min) examined did not appear acutely harmful to mussels.

  4. Floristic composition, environmental variation and species distribution patterns in burned grassland in southern Brazil.

    PubMed

    Overbeck, G E; Müller, S C; Pillar, V D; Pfadenhauer, J

    2006-11-01

    In regularly burned grassland on Morro Santana, Porto Alegre, RS, Brazil, we investigated differences in the floristic composition and their relation to soil properties, aspect and distance from the forest border. In 48 plots of 0.75 m2, we identified a total of 201 species from a local species pool of approximately 450 to 500 species. Most species occurred in low frequencies, showing clumpy distribution patterns in the studied area. Multivariate analysis showed that plots close to the forest edge clearly differed from plots in the open grassland concerning composition and structure. Plots exposed to the north differed from plots on the top of the hill both in the composition of species as well as in soil variables, mainly due to shallower soil in the former. No strong relation between soil properties and variation in vegetation composition could be detected at a finer scale. The studied grassland, as all grassland vegetation in southern Brazil, is very rich in species compared to other grassland formations worldwide. However, this high biodiversity and conservational value of Campos vegetation in general has so far not been recognized properly. Disturbance is essential to maintain this open vegetation type and its species richness. Fire should be considered as a management option in the absence of grazing.

  5. Explaining the effects of floral density on flower visitor species composition

    PubMed Central

    Essenberg, Carla J.

    2013-01-01

    Floral density often influences the species composition of flower visitors. This variation in visitor species composition could have significant effects on pollination success and plant fitness but is poorly understood, especially in the many pollination guilds dominated by non-territorial species. This paper presents a foraging model that explores how flower visitors with diverse traits should distribute themselves across resource patches differing in floral density. The model predicts that species with low flower search speeds and low flower handling costs compared to competitors will usually dominate dense flower patches. In addition, amongst flower visitors that have lower energy expenditure rates while handling flowers than while traveling, species maximizing energetic efficiency are typically associated with dense flower patches whereas those maximizing net rate of energy intake are associated with sparse patches. The model is able to predict some key aspects of a previously-observed effect of floral density on species composition of flower visitors to the yellowflower tarweed (Holocarpha virgata). By providing insights into how flower visitors’ traits shape the effects of floral density on the species composition of flower visitors, this study makes an important step towards understanding how pollinator diversity influences relationships between plant density and plant fitness. PMID:23448884

  6. Modern tree species composition reflects ancient Maya "forest gardens" in northwest Belize.

    PubMed

    Ross, Nanci J

    2011-01-01

    Ecology and ethnobotany were integrated to assess the impact of ancient Maya tree-dominated home gardens (i.e., "forest gardens"), which contained a diversity of tree species used for daily household needs, on the modern tree species composition of a Mesoamerican forest. Researchers have argued that the ubiquity of these ancient gardens throughout Mesoamerica led to the dominance of species useful to Maya in the contemporary forest, but this pattern may be localized depending on ancient land use. The tested hypothesis was that species composition would be significantly different between areas of dense ancient residential structures (high density) and areas of little or no ancient settlement (low density). Sixty-three 400-m2 plots (31 high density and 32 low density) were censused around the El Pilar Archaeological Reserve in northwestern Belize. Species composition was significantly different, with higher abundances of commonly utilized "forest garden" species still persisting in high-density forest areas despite centuries of abandonment. Subsequent edaphic analyses only explained 5% of the species composition differences. This research provides data on the long-term impacts of Maya forests gardens for use in development of future conservation models. For Mesoamerican conservation programs to work, we must understand the complex ecological and social interactions within an ecosystem that developed in intimate association with humans.

  7. DNA Barcoding of Shark Meats Identify Species Composition and CITES-Listed Species from the Markets in Taiwan

    PubMed Central

    Liu, Shang-Yin Vanson; Chan, Chia-Ling Carynn; Lin, Oceana; Hu, Chieh-Shen; Chen, Chaolun Allen

    2013-01-01

    Background An increasing awareness of the vulnerability of sharks to exploitation by shark finning has contributed to a growing concern about an unsustainable shark fishery. Taiwan’s fleet has the 4th largest shark catch in the world, accounting for almost 6% of the global figures. Revealing the diversity of sharks consumed by Taiwanese is important in designing conservation plans. However, fins make up less than 5% of the total body weight of a shark, and their bodies are sold as filets in the market, making it difficult or impossible to identify species using morphological traits. Methods In the present study, we adopted a DNA barcoding technique using a 391-bp fragment of the mitochondrial cytochrome oxidase I (COI) gene to examine the diversity of shark filets and fins collected from markets and restaurants island-wide in Taiwan. Results Amongst the 548 tissue samples collected and sequenced, 20 major clusters were apparent by phylogenetic analyses, each of them containing individuals belonging to the same species (most with more than 95% bootstrap values), corresponding to 20 species of sharks. Additionally, Alopias pelagicus, Carcharhinus falciformis, Isurus oxyrinchus, and Prionace glauca consisted of 80% of the samples we collected, indicating that these species might be heavily consumed in Taiwan. Approximately 5% of the tissue samples used in this study were identified as species listed in CITES Appendix II, including two species of Sphyrna, C. longimanus and Carcharodon carcharias. Conclusion DNA barcoding provides an alternative method for understanding shark species composition when species-specific data is unavailable. Considering the global population decline, stock assessments of Appendix II species and highly consumed species are needed to accomplish the ultimate goal of shark conservation. PMID:24260209

  8. Algal growth and community structure in a mixed-culture system using coal seam gas water as the water source.

    PubMed

    Buchanan, Jessica J; Slater, Frances R; Bai, Xue; Pratt, Steven

    2013-01-01

    Coal seam gas (CSG) is being touted as a transition fuel as the world moves towards low-carbon economies. However, the development of CSG reserves will generate enormous volumes of saline water. In this work, we investigate the potential of using this saline water to support mass algae production. Water and brine from a CSG water treatment facility (1.6 and 11.6 g total dissolved solids per litre (TDS L(-1)) respectively) were inoculated with algal biomass from freshwater and seawater environments and supplemented with nutrients in open, fed-batch reactors. Significant algal growth was recorded, with maximum specific growth rates in CSG water and CSG brine of 0.20 +/- 0.05 d(-1) and 0.26 +/- 0.04 d(-1) respectively. These maximum specific growth rates were equal to or greater than specific growth rates in deionized water and seawater diluted to the same salinity. However, algal growth lag time in CSG brine was between 7 and 9 times longer than in other waters. Microscopy and terminal-restriction fragment length polymorphism (T-RFLP) were used to monitor community structure in the reactors. The same few algal species dominated all of the reactors, except for the CSG brine reactor at day 15. This result indicates that conditions in CSG brine select for different species of algae compared to seawater of the same salinity and other waters tested. The findings suggest that mass algae production in CSG water is feasible but algae community composition may be a function of CSG water chemistry. This has implications for the downstream use of algae.

  9. Wood Chemical Composition in Species of Cactaceae: The Relationship between Lignification and Stem Morphology

    PubMed Central

    Canché-Escamilla, Gonzalo; Soto-Hernández, Marcos

    2015-01-01

    In Cactaceae, wood anatomy is related to stem morphology in terms of the conferred support. In species of cacti with dimorphic wood, a unique process occurs in which the cambium stops producing wide-band tracheids (WBTs) and produces fibers; this is associated with the aging of individuals and increases in size. Stem support and lignification have only been studied in fibrous tree-like species, and studies in species with WBTs or dimorphic wood are lacking. In this study, we approach this process with a chemical focus, emphasizing the role of wood lignification. We hypothesized that the degree of wood lignification in Cactaceae increases with height of the species and that its chemical composition varies with wood anatomy. To test this, we studied the chemical composition (cellulose, hemicellulose, and lignin content) in 13 species (2 WBTs wood, 3 dimorphic, and 8 fibrous) with contrasting growth forms. We also analyzed lignification in dimorphic and fibrous species to determine the chemical features of WBTs and fibers and their relationship with stem support. The lignin contents were characterized by Fourier transform infrared spectroscopy and high performance liquid chromatography. We found that 11 species have a higher percentage (>35%) of lignin in their wood than other angiosperms or gymnosperms. The lignin chemical composition in fibrous species is similar to that of other dicots, but it is markedly heterogeneous in non-fibrous species where WBTs are abundant. The lignification in WBTs is associated with the resistance to high water pressure within cells rather than the contribution to mechanical support. Dimorphic wood species are usually richer in syringyl lignin, and tree-like species with lignified rays have more guaiacyl lignin. The results suggest that wood anatomy and lignin distribution play an important role in the chemical composition of wood, and further research is needed at the cellular level. PMID:25880223

  10. Species richness effects on ecosystem multifunctionality depend on evenness, composition and spatial pattern

    USGS Publications Warehouse

    Maestre, F.T.; Castillo-Monroy, A. P.; Bowker, M.A.; Ochoa-Hueso, R.

    2012-01-01

    1. Recent studies have suggested that the simultaneous maintenance of multiple ecosystem functions (multifunctionality) is positively supported by species richness. However, little is known regarding the relative importance of other community attributes (e.g. spatial pattern, species evenness) as drivers of multifunctionality. 2. We conducted two microcosm experiments using model biological soil crust communities dominated by lichens to: (i) evaluate the joint effects and relative importance of changes in species composition, spatial pattern (clumped and random distribution of lichens), evenness (maximal and low evenness) and richness (from two to eight species) on soil functions related to nutrient cycling (β-glucosidase, urease and acid phosphatase enzymes, in situ N availability, total N, organic C, and N fixation), and (ii) assess how these community attributes affect multifunctionality. 3. Species richness, composition and spatial pattern affected multiple ecosystem functions (e.g. organic C, total N, N availability, β-glucosidase activity), albeit the magnitude and direction of their effects varied with the particular function, experiment and soil depth considered. Changes in species composition had effects on organic C, total N and the activity of β-glucosidase. Significant species richness × evenness and spatial pattern × evenness interactions were found when analysing functions such as organic C, total N and the activity of phosphatase. 4. The probability of sustaining multiple ecosystem functions increased with species richness, but this effect was largely modulated by attributes such as species evenness, composition and spatial pattern. Overall, we found that model communities with high species richness, random spatial pattern and low evenness increased multifunctionality. 5. Synthesis. Our results illustrate how different community attributes have a diverse impact on ecosystem functions related to nutrient cycling, and provide new

  11. Wood chemical composition in species of Cactaceae: the relationship between lignification and stem morphology.

    PubMed

    Reyes-Rivera, Jorge; Canché-Escamilla, Gonzalo; Soto-Hernández, Marcos; Terrazas, Teresa

    2015-01-01

    In Cactaceae, wood anatomy is related to stem morphology in terms of the conferred support. In species of cacti with dimorphic wood, a unique process occurs in which the cambium stops producing wide-band tracheids (WBTs) and produces fibers; this is associated with the aging of individuals and increases in size. Stem support and lignification have only been studied in fibrous tree-like species, and studies in species with WBTs or dimorphic wood are lacking. In this study, we approach this process with a chemical focus, emphasizing the role of wood lignification. We hypothesized that the degree of wood lignification in Cactaceae increases with height of the species and that its chemical composition varies with wood anatomy. To test this, we studied the chemical composition (cellulose, hemicellulose, and lignin content) in 13 species (2 WBTs wood, 3 dimorphic, and 8 fibrous) with contrasting growth forms. We also analyzed lignification in dimorphic and fibrous species to determine the chemical features of WBTs and fibers and their relationship with stem support. The lignin contents were characterized by Fourier transform infrared spectroscopy and high performance liquid chromatography. We found that 11 species have a higher percentage (>35%) of lignin in their wood than other angiosperms or gymnosperms. The lignin chemical composition in fibrous species is similar to that of other dicots, but it is markedly heterogeneous in non-fibrous species where WBTs are abundant. The lignification in WBTs is associated with the resistance to high water pressure within cells rather than the contribution to mechanical support. Dimorphic wood species are usually richer in syringyl lignin, and tree-like species with lignified rays have more guaiacyl lignin. The results suggest that wood anatomy and lignin distribution play an important role in the chemical composition of wood, and further research is needed at the cellular level.

  12. Species effects on ecosystem processes are modified by faunal responses to habitat composition.

    PubMed

    Bulling, Mark T; Solan, Martin; Dyson, Kirstie E; Hernandez-Milian, Gema; Luque, Patricia; Pierce, Graham J; Raffaelli, Dave; Paterson, David M; White, Piran C L

    2008-12-01

    Heterogeneity is a well-recognized feature of natural environments, and the spatial distribution and movement of individual species is primarily driven by resource requirements. In laboratory experiments designed to explore how different species drive ecosystem processes, such as nutrient release, habitat heterogeneity is often seen as something which must be rigorously controlled for. Most small experimental systems are therefore spatially homogeneous, and the link between environmental heterogeneity and its effects on the redistribution of individuals and species, and on ecosystem processes, has not been fully explored. In this paper, we used a mesocosm system to investigate the relationship between habitat composition, species movement and sediment nutrient release for each of four functionally contrasting species of marine benthic invertebrate macrofauna. For each species, various habitat configurations were generated by selectively enriching patches of sediment with macroalgae, a natural source of spatial variability in intertidal mudflats. We found that the direction and extent of faunal movement between patches differs with species identity, density and habitat composition. Combinations of these factors lead to concomitant changes in nutrient release, such that habitat composition effects are modified by species identity (in the case of NH4-N) and by species density (in the case of PO4-P). It is clear that failure to accommodate natural patterns of spatial heterogeneity in such studies may result in an incomplete understanding of system behaviour. This will be particularly important for future experiments designed to explore the effects of species richness on ecosystem processes, where the complex interactions reported here for single species may be compounded when species are brought together in multi-species combinations.

  13. Sapphire Energy - Integrated Algal Biorefinery

    SciTech Connect

    White, Rebecca L.; Tyler, Mike

    2015-07-22

    Sapphire Energy, Inc. (SEI) is a leader in large-scale photosynthetic algal biomass production, with a strongly cohesive research, development, and operations program. SEI takes a multidiscipline approach to integrate lab-based strain selection, cultivation and harvest and production scale, and extraction for the production of Green Crude oil, a drop in replacement for traditional crude oil.. SEI’s technical accomplishments since 2007 have produced a multifunctional platform that can address needs for fuel, feed, and other higher value products. Figure 1 outlines SEI’s commercialization process, including Green Crude production and refinement to drop in fuel replacements. The large scale algal biomass production facility, the SEI Integrated Algal Biorefinery (IABR), was built in Luna County near Columbus, New Mexico (see fig 2). The extraction unit was located at the existing SEI facility in Las Cruces, New Mexico, approximately 95 miles from the IABR. The IABR facility was constructed on time and on budget, and the extraction unit expansion to accommodate the biomass output from the IABR was completed in October 2012. The IABR facility uses open pond cultivation with a proprietary harvesting method to produce algal biomass; this biomass is then shipped to the extraction facility for conversion to Green Crude. The operation of the IABR and the extraction facilities has demonstrated the critical integration of traditional agricultural techniques with algae cultivation knowledge for algal biomass production, and the successful conversion of the biomass to Green Crude. All primary unit operations are de-risked, and at a scale suitable for process demonstration. The results are stable, reliable, and long-term cultivation of strains for year round algal biomass production. From June 2012 to November 2014, the IABR and extraction facilities produced 524 metric tons (MT) of biomass (on a dry weight basis), and 2,587 gallons of Green Crude. Additionally, the IABR

  14. Biochemical composition of three species of unionid mussels after emersion

    USGS Publications Warehouse

    Greseth, Shari L.; Cope, W.G.; Rada, R.G.; Waller, D.L.; Bartsch, M.R.

    2003-01-01

    Freshwater mussels are emersed (exposed to air) during conservation activities such as surveys and relocations. Success of these activities depends upon the ability of mussels to survive emersion and to re-burrow in the substratum. We evaluated the acute sublethal effects of emersion on three species of unionid mussels [pocketbook, Lampsilis cardium (Rafinesque, 1820); pimpleback, Quadrula pustulosa pustulosa (I. Lea, 1831); spike, Elliptio dilatata (Rafinesque, 1820)] by measuring three biochemicals (carbohydrate, lipid, protein) indicative of biochemical function and energy storage. Mussels were acclimated in water at 25A?C and exposed to five air temperatures (15, 20, 25, 35 and 45A?C) for 15, 30 and 60 min. After emersion, mussels were returned to water at 25A?C and observed for 14 days. Samples of mantle tissue were taken after the 14-day postexposure period and analysed for carbohydrate, lipid and protein. Three-way analysis of variance (ANOVA) did not reveal consistent trends in carbohydrate, lipid or protein concentrations due to sex of mussels, duration of emersion, air temperature or their interaction terms that indicated biological compensation to stress. Overall mean carbohydrate concentrations were greatest (range 447a??615 mg/g dry wt) among the species, followed by protein (179a??289 mg/g dry wt) and lipids (26.7a??38.1 mg/g dry wt). These results have positive implications for conducting conservation activities, because emersion over the range of temperatures (15a??35A?C) and durations (15a??60 min) examined did not appear acutely harmful to mussels.

  15. Stable and sporadic symbiotic communities of coral and algal holobionts

    PubMed Central

    Hester, Eric R; Barott, Katie L; Nulton, Jim; Vermeij, Mark JA; Rohwer, Forest L

    2016-01-01

    Coral and algal holobionts are assemblages of macroorganisms and microorganisms, including viruses, Bacteria, Archaea, protists and fungi. Despite a decade of research, it remains unclear whether these associations are spatial–temporally stable or species-specific. We hypothesized that conflicting interpretations of the data arise from high noise associated with sporadic microbial symbionts overwhelming signatures of stable holobiont members. To test this hypothesis, the bacterial communities associated with three coral species (Acropora rosaria, Acropora hyacinthus and Porites lutea) and two algal guilds (crustose coralline algae and turf algae) from 131 samples were analyzed using a novel statistical approach termed the Abundance-Ubiquity (AU) test. The AU test determines whether a given bacterial species would be present given additional sampling effort (that is, stable) versus those species that are sporadically associated with a sample. Using the AU test, we show that coral and algal holobionts have a high-diversity group of stable symbionts. Stable symbionts are not exclusive to one species of coral or algae. No single bacterial species was ubiquitously associated with one host, showing that there is not strict heredity of the microbiome. In addition to the stable symbionts, there was a low-diversity community of sporadic symbionts whose abundance varied widely across individual holobionts of the same species. Identification of these two symbiont communities supports the holobiont model and calls into question the hologenome theory of evolution. PMID:26555246

  16. Remnant Trees Affect Species Composition but Not Structure of Tropical Second-Growth Forest

    PubMed Central

    Sandor, Manette E.; Chazdon, Robin L.

    2014-01-01

    Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2–3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests (“control plots”). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields. PMID:24454700

  17. Remnant trees affect species composition but not structure of tropical second-growth forest.

    PubMed

    Sandor, Manette E; Chazdon, Robin L

    2014-01-01

    Remnant trees, spared from cutting when tropical forests are cleared for agriculture or grazing, act as nuclei of forest regeneration following field abandonment. Previous studies on remnant trees were primarily conducted in active pasture or old fields abandoned in the previous 2-3 years, and focused on structure and species richness of regenerating forest, but not species composition. Our study is among the first to investigate the effects of remnant trees on neighborhood forest structure, biodiversity, and species composition 20 years post-abandonment. We compared the woody vegetation around individual remnant trees to nearby plots without remnant trees in the same second-growth forests ("control plots"). Forest structure beneath remnant trees did not differ significantly from control plots. Species richness and species diversity were significantly higher around remnant trees. The species composition around remnant trees differed significantly from control plots and more closely resembled the species composition of nearby old-growth forest. The proportion of old-growth specialists and generalists around remnant trees was significantly greater than in control plots. Although previous studies show that remnant trees may initially accelerate secondary forest growth, we found no evidence that they locally affect stem density, basal area, and seedling density at later stages of regrowth. Remnant trees do, however, have a clear effect on the species diversity, composition, and ecological groups of the surrounding woody vegetation, even after 20 years of forest regeneration. To accelerate the return of diversity and old-growth forest species into regrowing forest on abandoned land, landowners should be encouraged to retain remnant trees in agricultural or pastoral fields.

  18. Algal taxonomy forum: Algal Taxonomist, Let Serendipity Reign!

    PubMed

    Druehl, Louis

    2013-04-01

    The publication of a mini-review by Olivier De Clerck et al. in this issue of the Journal of Phycology presented an opportunity to open a dialogue on challenges faced by contemporary algal taxonomists. The Editorial Office solicited the following two additional contributions in response to De Clerck et al.'s paper; the responses were edited solely for clarity, space and format.

  19. Floral scent composition predicts bee pollination system in five butterfly bush (Buddleja, Scrophulariaceae) species.

    PubMed

    Gong, W-C; Chen, G; Vereecken, N J; Dunn, B L; Ma, Y-P; Sun, W-B

    2015-01-01

    Traditionally, plant-pollinator interactions have been interpreted as pollination syndrome. However, the validity of pollination syndrome has been widely doubted in modern studies of pollination ecology. The pollination ecology of five Asian Buddleja species, B. asiatica, B. crispa, B. forrestii, B. macrostachya and B. myriantha, in the Sino-Himalayan region in Asia, flowering in different local seasons, with scented inflorescences were investigated during 2011 and 2012. These five species exhibited diverse floral traits, with narrow and long corolla tubes and concealed nectar. According to their floral morphology, larger bees and Lepidoptera were expected to be the major pollinators. However, field observations showed that only larger bees (honeybee/bumblebee) were the primary pollinators, ranging from 77.95% to 97.90% of total visits. In this study, floral scents of each species were also analysed using coupled gas chromatography and mass spectrometry (GC-MS). Although the five Buddleja species emitted differentiated floral scent compositions, our results showed that floral scents of the five species are dominated by substances that can serve as attractive signals to bees, including species-specific scent compounds and principal compounds with larger relative amounts. This suggests that floral scent compositions are closely associated with the principal pollinator assemblages in these five species. Therefore, we conclude that floral scent compositions rather than floral morphology traits should be used to interpret plant-pollinator interactions in these Asian Buddleja species.

  20. Effects of Previous Land-Use on Plant Species Composition and Diversity in Mediterranean Forests.

    PubMed

    Kouba, Yacine; Martínez-García, Felipe; de Frutos, Ángel; Alados, Concepción L

    2015-01-01

    At some point in their history, most forests in the Mediterranean Basin have been subjected to intensive management or converted to agriculture land. Knowing how forest plant communities recovered after the abandonment of forest-management or agricultural practices (including livestock grazing) provides a basis for investigating how previous land management have affected plant species diversity and composition in forest ecosystems. Our study investigated the consequences of historical "land management" practices on present-day Mediterranean forests by comparing species assemblages and the diversity of (i) all plant species and (ii) each ecological group defined by species' habitat preferences and successional status (i.e., early-, mid-, and late-successional species). We compared forest stands that differed both in land-use history and in successional stage. In addition, we evaluated the value of those stands for biodiversity conservation. The study revealed significant compositional differentiation among stands that was due to among-stand variations in the diversity (namely, species richness and evenness) of early-, intermediate-, and late-successional species. Historical land management has led to an increase in compositional divergences among forest stands and the loss of late-successional forest species.

  1. Nectar production dynamics and sugar composition in two Mucuna species (Leguminosae, Faboideae) with different specialized pollinators.

    PubMed

    Agostini, Kayna; Sazima, Marlies; Galetto, Leonardo

    2011-11-01

    Nectar is secreted in particular rhythms throughout the lifespan of a flower, which allows determining the nectar production dynamics. This paper compares nectar features in Mucuna japira and Mucuna urens describing: dynamics of nectar production, floral response to nectar removal, resorption, nectar sugar composition, and variation in nectar sugar composition. M. japira inflorescence bears 12-21 yellow flowers, which are in anthesis for 7 days, whereas M. urens inflorescence bears 36-54 greenish flowers, but only 1-3 flowers are in anthesis simultaneously that last one night. Nectar volume and sugar concentration were measured, and the amount of sugar was estimated. Qualitative and quantitative nectar sugar composition was determined. Both species had a constant nectar sugar concentration (ca. 10% for M. japira and ca. 16% for M. urens) and secreted high volumes of nectar (ca. 340 μl per flower for M. japira and 310 μl per flower for M. urens), during 5 days for M. japira and 6 h for M. urens, but after the first removal, i.e., when flower opening mechanism is triggered, nectar production stops immediately. Nectar resorption occurred in both species. Nectar sugar composition showed some similarities between the species. Variation in nectar sugar composition occurred in both species. The Mucuna species are dependent on their pollinators to produce fruits and seeds, and they have different strategies to promote the necessary interaction with birds or bats, especially related to nectar and flower characteristics.

  2. Nectar production dynamics and sugar composition in two Mucuna species (Leguminosae, Faboideae) with different specialized pollinators

    NASA Astrophysics Data System (ADS)

    Agostini, Kayna; Sazima, Marlies; Galetto, Leonardo

    2011-11-01

    Nectar is secreted in particular rhythms throughout the lifespan of a flower, which allows determining the nectar production dynamics. This paper compares nectar features in Mucuna japira and Mucuna urens describing: dynamics of nectar production, floral response to nectar removal, resorption, nectar sugar composition, and variation in nectar sugar composition. M. japira inflorescence bears 12-21 yellow flowers, which are in anthesis for 7 days, whereas M. urens inflorescence bears 36-54 greenish flowers, but only 1-3 flowers are in anthesis simultaneously that last one night. Nectar volume and sugar concentration were measured, and the amount of sugar was estimated. Qualitative and quantitative nectar sugar composition was determined. Both species had a constant nectar sugar concentration (ca. 10% for M. japira and ca. 16% for M. urens) and secreted high volumes of nectar (ca. 340 μl per flower for M. japira and 310 μl per flower for M. urens), during 5 days for M. japira and 6 h for M. urens, but after the first removal, i.e., when flower opening mechanism is triggered, nectar production stops immediately. Nectar resorption occurred in both species. Nectar sugar composition showed some similarities between the species. Variation in nectar sugar composition occurred in both species. The Mucuna species are dependent on their pollinators to produce fruits and seeds, and they have different strategies to promote the necessary interaction with birds or bats, especially related to nectar and flower characteristics.

  3. Linking variability in species composition and MODIS NDVI based on beta diversity measurements

    NASA Astrophysics Data System (ADS)

    He, Kate S.; Zhang, Jianting; Zhang, Qiaofeng

    2009-01-01

    Finding an effective method to quantify species compositional changes in time and space has been an important task for ecologists and biogeographers. Recently, exploring regional floristic patterns using data derived from satellite imagery, such as the normalized difference vegetation index (NDVI) has drawn considerable research interests among ecologists. Studies have shown that NDVI could be a fairly good surrogate for primary productivities. In this study, we used plant distribution data in the North and the South Carolina states to investigate the correlations between species composition and NDVI within defined ecoregions using Mantel test and multi-response permutation procedure (MRPP). Our analytical approach involved generating compositional dissimilarity matrices by computing pairwise beta diversities of the 145 counties in the two states for species distribution data and by computing Euclidian distances for NDVI time series data. We argue that beta diversity measurements take the pairwise dissimilarities into consideration explicitly and could provide more spatial correlation information compared with uni- or multi-dimensional regressions. Our results showed a significant positive correlation between species compositional dissimilarity matrices and NDVI distance matrices. We also found for the first time that the strength of correlation increased at a lower taxonomic rank. Same trends were discovered when incorporating variability in phenological patterns in NDVI. Our findings suggest that remotely sensed NDVI can be viable for monitoring species compositional changes at regional scales.

  4. Species composition and bathymetric distribution of gorgonians (Anthozoa: Octocorallia) on the Southern Mexican Pacific coast.

    PubMed

    Abeytia, Rosalinda; Guzmán, Hector M; Breedy, Odalisca

    2013-09-01

    Gorgonians are important components of coastal ecosystems, as they provide niches, natural compounds with medical applications and are used as bioindicators. Species composition and assemblage structure of gorgonians (Anthozoa: Octocorallia) were studied along a bathymetric profile in the Southern Mexican Pacific coast. Species composition was based on specimens collected within a depth range of 0-70 m in 15 sites. The relative abundance of species was determined in six sites at four depths (5, 10, 20 and 25 m) using three 10 m2 transects at each depth level. Twenty-seven species of gorgonians belonging to six genera and three families were registered. The species composition varied with depth: 11 species were distributed between 0-25m depth, while 17 species were found between 40-70 m depth interval. The shallow zone is characterized by a relatively large abundance of gorgonians, dominated by colonies of Leptogorgia cuspidata and L. ena. In contrast, the deepest zone was characterized by relatively low abundance of gorgonians, dominated by L. alba, the only species observed in both depth intervals. The similarity analysis showed differences in the composition and abundance of species by depth and site, suggesting that the main factor in determining the assemblage structure is depth. Results of this study suggest that the highest richness of gorgonian species in the study area may be located at depths of 40-70 m, whereas the highest abundances are found between 5 and 10 m depth. This study represents a contribution to the poorly known eastern Pacific gorgonian biota.

  5. [Species composition and ecological distribution of macrofungi in Huangpushan Natural Reserve of Anhui Province].

    PubMed

    Chai, Xin-Yi

    2010-01-01

    In order to understand and utilize the macrofungal resources in Huangpushan Natural Reserve of Anhui Province, their species composition and ecological distribution were investigated, and a comprehensive evaluation was made. A total of 87 macrofungal species were recorded, belonging to 46 genera, 22 families, 6 orders and 4 classes. They were widely distributed in broadleaf forest, coniferous forest, mixed broadleaf and coniferous forest, bamboo forest, and wasteland. According to their economic values, there were 42 edible species, 31 medicinal species, and 6 poisonous species; based on their ecological habitats, they were categorized into humicolous (44 species), lignicolous (30), ectomycorrhizal (19), and entomogenous species (2). The macro-fungi in the Reserve had great prospects of applying in food, medicine, and forestation.

  6. Essential Oils Composition and Antioxidant Properties of Three Thymus Species

    PubMed Central

    Amiri, Hamzeh

    2012-01-01

    The essential oils of three wild-growing Thymus species, collected from west of Iran during the flowering stage, were obtained by hydrodistillation and analyzed by gas chromatography (GC) and gas chromatography/mass spectrometry (GC-MS). Under the optimum extraction and analysis conditions, 44, 38, and 38 constituents (mainly monoterpenes compounds) were identified in T. kotschyanus Boiss. and Hohen, T. eriocalyx (Ronniger) Jalas, and T. daenensis subsp lancifolius (Celak) Jalas which represented 89.9%, 99.7%, and 95.8% of the oils, respectively. The main constituents were thymol (16.4–42.6%), carvacrol (7.6–52.3%), and γ-terpinene (3–11.4%). Antioxidant activity was employed by two complementary test systems, namely, 2,2-diphenyl-1-picrylhydrazyl (DPPH) free-radical scavenging and β-carotene/linoleic acid systems. Antioxidant activity of polar subfraction of T. daenensis subsp lancifolius (Celak) Jalas was found to be higher than those of the others in DPPH assay, while nonpolar subfraction of T. eriocalyx (Ronniger) Jalas has most antioxidant activity in β-carotene/linoleic acid test (19.1 ± 0.1 μg/mL and 96.1 ± 0.8% inhibition rate, resp.). PMID:21876714

  7. Effect of fertiliser application and abandonment on plant species composition of Festuca rubra grassland

    NASA Astrophysics Data System (ADS)

    Pavlů, Vilém; Gaisler, Jan; Pavlů, Lenka; Hejcman, Michal; Ludvíková, Vendula

    2012-11-01

    Little is known about the effects of nitrogen (N), phosphorus (P) and potassium (K) application on soil chemical properties and plant species composition of mountain Festuca rubra grasslands. In this study, we aimed to determine whether fertiliser application affects plant species composition and soil properties during periods of management, and whether residual after-effects of fertiliser application can be detected eight years after its use is abandoned. The experiment with unfertilised control, PK treatment and treatments with low and higher level of NPK application under three (intensive management from 1993 to 1997) and two cut management (moderate management from 1997 to 1999) was established in the Jizera Mts. (Czech Republic) on F. rubra meadow and then the experiment was eight years abandoned. Immediately after the introduction of intensive management, a decrease in species richness and diversification of plant species composition occurred. Plant communities which had diversified in different fertiliser treatments persisted under moderately intensive management. The cover of Alopecurus pratensis increased to >50% while the cover of Agrostis capillaris decreased to <5% in NPK treatments during the period of intensive management. Trifolium repens became the dominant species in the PK treatment. Within eight years, under no management, the differences in plant species composition disappeared, species richness decreased and F. rubra, followed by Hypericum maculatum, became dominant in all treatments. The differences in biomass P concentration and plant available P and K concentrations in the soil were still detectable eight years after the last fertiliser application. As shown in this study, moderate application of NPK and consequent abandonment need not generate irreversible changes in species composition of mountain grassland.

  8. Fungal-algal association patterns in lichen symbiosis linked to macroclimate.

    PubMed

    Singh, Garima; Dal Grande, Francesco; Divakar, Pradeep K; Otte, Jürgen; Crespo, Ana; Schmitt, Imke

    2017-04-01

    Both macroclimate and evolutionary events may influence symbiont association and diversity patterns. Here we assess how climatic factors and evolutionary events shape fungal-algal association patterns in the widely distributed lichen-forming fungal genus Protoparmelia. Multilocus phylogenies of fungal and algal partners were generated using 174 specimens. Coalescent-based species delimitation analysis suggested that 23 fungal hosts are associating with 20 algal species. Principal component analysis (PCA) was performed to infer how fungal-algal association patterns varied with climate. Fungi associated with one to three algal partners whereas algae accepted one to five fungal partners. Both fungi and algae were more specific, associating with fewer partners, in the warmer climates. Interaction with more than one partner was more frequent in cooler climates for both the partners. Cophylogenetic analyses suggest congruent fungal-algal phylogenies. Host switch was a more common event in warm climates, whereas failure of the photobiont to diverge with its fungal host was more frequent in cooler climates. We conclude that both environmental factors and evolutionary events drive fungal and algal evolution in Protoparmelia. The processes leading to phylogenetic congruence of fungi and algae are different in different macrohabitats in our study system. Hence, closely related species inhabiting diverse habitats may follow different evolutionary pathways.

  9. Algal Systems for Hydrogen Photoproduction

    SciTech Connect

    Ghirardi, Maria L

    2015-10-08

    The National Renewable Energy Laboratory (NREL), under the guidance of Drs. Michael Seibert (retired, Fellow Emeritus) and Maria Ghirardi (Fellow), led 15 years of research addressing the issue of algal H2 photoproduction. This project resulted in greatly increased rates and yields of algal hydrogen production; increased understanding of the H2 metabolism in the green alga, Chlamydomonas reinhardtii; expanded our knowledge of other physiological aspects relevant to sustained algal photosynthetic H2 production; led to the genetic identification, cloning and manipulation of algal hydrogenase genes; and contributed to a broader, fundamental understanding of the technical and scientific challenges to improving the conversion efficiencies in order to reach the U.S. Department of Energy’s Fuel Cell Technologies Office’s targets. Some of the tangible results are: (i) 64 publications and 6 patents, (ii) international visibility to NREL, (iii) reinvigoration of national and international biohydrogen research, and (iv) research progress that helped stimulate new funding from other DOE and non-DOE programs, including the AFOSR and the DOE Office of Science.

  10. A simple model for forecast of coastal algal blooms

    NASA Astrophysics Data System (ADS)

    Wong, Ken T. M.; Lee, Joseph H. W.; Hodgkiss, I. J.

    2007-08-01

    In eutrophic sub-tropical coastal waters around Hong Kong and South China, algal blooms (more often called red tides) due to the rapid growth of microscopic phytoplankton are often observed. Under favourable environmental conditions, these blooms can occur and subside over rather short time scales—in the order of days to a few weeks. Very often, these blooms are observed in weakly flushed coastal waters under calm wind conditions—with or without stratification. Based on high-frequency field observations of harmful algal blooms at two coastal mariculture zones in Hong Kong, a mathematical model has been developed to forecast algal blooms. The model accounts for algal growth, decay, settling and vertical turbulent mixing, and adopts the same assumptions as the classical Riley, Stommel and Bumpus model (Riley, G.A., Stommel, H., Bumpus, D.F., 1949. Quantitative ecology of the plankton of the western North Atlantic. Bulletin of the Bingham Oceanographic Collection Yale University 12, 1-169). It is shown that for algal blooms to occur, a vertical stability criterion, E < 4 μl2/ π2, must be satisfied, where E, μ, l are the vertical turbulent diffusivity, algal growth rate, and euphotic layer depth respectively. In addition, a minimum nutrient threshold concentration must be reached. Moreover, with a nutrient competition consideration, the type of bloom (caused by motile or non-motile species) can be classified. The model requires as input simple and readily available field measurements of water column transparency and nutrient concentration, and representative maximum algal growth rate of the motile and non-motile species. In addition, with the use of three-dimensional hydrodynamic circulation models, simple relations are derived to estimate the vertical mixing coefficient as a function of tidal range, wind speed, and density stratification. The model gives a quick assessment of the likelihood of algal bloom occurrence, and has been validated against field

  11. Explicitly correlated composite thermochemistry of transition metal species.

    PubMed

    Bross, David H; Hill, J Grant; Werner, H-J; Peterson, Kirk A

    2013-09-07

    Atomization energies were calculated using explicitly correlated coupled cluster methods with correlation consistent basis sets for a series of 19 small molecules containing 3d transition metal atoms. The atomization energies were calculated using a modified Feller-Peterson-Dixon approach in which CCSD(T) complete basis set (CBS) limits were obtained using extrapolations of aVTZ∕aVQZ CCSD(T)-F12b correlation energies, and then a series of additive contributions for relativity, core correlation, higher order correlation, and zero-point vibrations were included. The frozen-core CBS limits calculated with F12 methods closely matched the more computational expensive conventional awCVQZ∕awCV5Z CBS extrapolations, with a mean unsigned deviation of just 0.1 kcal∕mol. In particular, the CCSD(T∗)-F12b∕aVDZ and aVTZ atomization energies were more accurate on average than the conventional CCSD(T)∕aVQZ and aV5Z results, respectively. In several cases the effects of higher order correlation beyond CCSD(T), as judged by CCSDT and CCSDT(Q)Λ calculations, were greater than 1 kcal∕mol, reaching 4.5 kcal∕mol for CrO3. For the 16 molecules of this study with experimental uncertainties of ∼3.5 kcal∕mol or less, the final composite heats of formation have a mean unsigned deviation (MUD) from experiment of just 1.3 kcal∕mol, which is slightly smaller than the average of the experimental uncertainties, 1.8 kcal∕mol. The root mean square deviation (RMS) is only slightly larger at 1.7 kcal∕mol. Without the contributions due to higher order correlation effects, the MUD and RMS rise to 2.1 and 2.8 kcal∕mol, respectively. To facilitate the F12 calculations, new (aug-)cc-pVnZ∕MP2Fit (n = Q, 5) and (aug-)cc-pwCVTZ∕MP2Fit auxiliary basis sets were also developed for the transition metal atoms.

  12. Explicitly correlated composite thermochemistry of transition metal species

    NASA Astrophysics Data System (ADS)

    Bross, David H.; Hill, J. Grant; Werner, H.-J.; Peterson, Kirk A.

    2013-09-01

    Atomization energies were calculated using explicitly correlated coupled cluster methods with correlation consistent basis sets for a series of 19 small molecules containing 3d transition metal atoms. The atomization energies were calculated using a modified Feller-Peterson-Dixon approach in which CCSD(T) complete basis set (CBS) limits were obtained using extrapolations of aVTZ/aVQZ CCSD(T)-F12b correlation energies, and then a series of additive contributions for relativity, core correlation, higher order correlation, and zero-point vibrations were included. The frozen-core CBS limits calculated with F12 methods closely matched the more computational expensive conventional awCVQZ/awCV5Z CBS extrapolations, with a mean unsigned deviation of just 0.1 kcal/mol. In particular, the CCSD(T*)-F12b/aVDZ and aVTZ atomization energies were more accurate on average than the conventional CCSD(T)/aVQZ and aV5Z results, respectively. In several cases the effects of higher order correlation beyond CCSD(T), as judged by CCSDT and CCSDT(Q)Λ calculations, were greater than 1 kcal/mol, reaching 4.5 kcal/mol for CrO3. For the 16 molecules of this study with experimental uncertainties of ˜3.5 kcal/mol or less, the final composite heats of formation have a mean unsigned deviation (MUD) from experiment of just 1.3 kcal/mol, which is slightly smaller than the average of the experimental uncertainties, 1.8 kcal/mol. The root mean square deviation (RMS) is only slightly larger at 1.7 kcal/mol. Without the contributions due to higher order correlation effects, the MUD and RMS rise to 2.1 and 2.8 kcal/mol, respectively. To facilitate the F12 calculations, new (aug-)cc-pVnZ/MP2Fit (n = Q, 5) and (aug-)cc-pwCVTZ/MP2Fit auxiliary basis sets were also developed for the transition metal atoms.

  13. Mycorrhizal Fungal Diversity and Community Composition in Two Closely Related Platanthera (Orchidaceae) Species.

    PubMed

    Esposito, Fabiana; Jacquemyn, Hans; Waud, Michael; Tyteca, Daniel

    2016-01-01

    While it is generally acknowledged that orchid species rely on mycorrhizal fungi for completion of their life cycle, little is yet known about how mycorrhizal fungal diversity and community composition vary within and between closely related orchid taxa. In this study, we used 454 amplicon pyrosequencing to investigate variation in mycorrhizal communities between pure (allopatric) and mixed (sympatric) populations of two closely related Platanthera species (Platanthera bifolia and P. chlorantha) and putative hybrids. Consistent with previous research, the two species primarily associated primarily with members of the Ceratobasidiaceae and, to a lesser extent, with members of the Sebacinales and Tulasnellaceae. In addition, a large number of ectomycorrhizal fungi belonging to various families were observed. Although a considerable number of mycorrhizal fungi were common to both species, the fungal communities were significantly different between the two species. Individuals with intermediate morphology showed communities similar to P. bifolia, confirming previous results based on the genetic architecture and fragrance composition that putative hybrids essentially belonged to one of the parental species (P. bifolia). Differences in mycorrhizal communities between species were smaller in mixed populations than between pure populations, suggesting that variation in mycorrhizal communities was largely controlled by local environmental conditions. The small differences in mycorrhizal communities in mixed populations suggests that mycorrhizal fungi are most likely not directly involved in maintaining species boundaries between the two Platanthera species. However, seed germination experiments are needed to unambiguously assess the contribution of mycorrhizal divergence to reproductive isolation.

  14. Mycorrhizal Fungal Diversity and Community Composition in Two Closely Related Platanthera (Orchidaceae) Species

    PubMed Central

    Esposito, Fabiana; Jacquemyn, Hans; Waud, Michael; Tyteca, Daniel

    2016-01-01

    While it is generally acknowledged that orchid species rely on mycorrhizal fungi for completion of their life cycle, little is yet known about how mycorrhizal fungal diversity and community composition vary within and between closely related orchid taxa. In this study, we used 454 amplicon pyrosequencing to investigate variation in mycorrhizal communities between pure (allopatric) and mixed (sympatric) populations of two closely related Platanthera species (Platanthera bifolia and P. chlorantha) and putative hybrids. Consistent with previous research, the two species primarily associated primarily with members of the Ceratobasidiaceae and, to a lesser extent, with members of the Sebacinales and Tulasnellaceae. In addition, a large number of ectomycorrhizal fungi belonging to various families were observed. Although a considerable number of mycorrhizal fungi were common to both species, the fungal communities were significantly different between the two species. Individuals with intermediate morphology showed communities similar to P. bifolia, confirming previous results based on the genetic architecture and fragrance composition that putative hybrids essentially belonged to one of the parental species (P. bifolia). Differences in mycorrhizal communities between species were smaller in mixed populations than between pure populations, suggesting that variation in mycorrhizal communities was largely controlled by local environmental conditions. The small differences in mycorrhizal communities in mixed populations suggests that mycorrhizal fungi are most likely not directly involved in maintaining species boundaries between the two Platanthera species. However, seed germination experiments are needed to unambiguously assess the contribution of mycorrhizal divergence to reproductive isolation. PMID:27695108

  15. Factors associated with long-term species composition in dry tropical forests of Central India

    NASA Astrophysics Data System (ADS)

    Agarwala, M.; DeFries, R. S.; Qureshi, Q.; Jhala, Y. V.

    2016-10-01

    The long-term future of species composition in forests depends on regeneration. Many factors can affect regeneration, including human use, environmental conditions, and species’ traits. This study examines the influence of these factors in a tropical deciduous forest of Central India, which is heavily used by local, forest-dependent residents for livestock grazing, fuel-wood extraction, construction and other livelihood needs. We measure size-class proportions (the ratio of abundance of a species at a site in a higher size class to total abundance in both lower and higher size classes) for 39 tree species across 20 transects at different intensities of human use. The size-class proportions for medium to large trees and for small to medium-sized trees were negatively associated with species that are used for local construction, while size class proportions for saplings to small trees were positively associated with those species that are fire resistant and negatively associated with livestock density. Results indicate that grazing and fire prevent non-fire resistant species from reaching reproductive age, which can alter the long term composition and future availability of species that are important for local use and ecosystem services. Management efforts to reduce fire and forest grazing could reverse these impacts on long-term forest composition.

  16. Effects of Previous Land-Use on Plant Species Composition and Diversity in Mediterranean Forests

    PubMed Central

    Kouba, Yacine; Martínez-García, Felipe; de Frutos, Ángel; Alados, Concepción L.

    2015-01-01

    At some point in their history, most forests in the Mediterranean Basin have been subjected to intensive management or converted to agriculture land. Knowing how forest plant communities recovered after the abandonment of forest-management or agricultural practices (including livestock grazing) provides a basis for investigating how previous land management have affected plant species diversity and composition in forest ecosystems. Our study investigated the consequences of historical “land management” practices on present-day Mediterranean forests by comparing species assemblages and the diversity of (i) all plant species and (ii) each ecological group defined by species’ habitat preferences and successional status (i.e., early-, mid-, and late-successional species). We compared forest stands that differed both in land-use history and in successional stage. In addition, we evaluated the value of those stands for biodiversity conservation. The study revealed significant compositional differentiation among stands that was due to among-stand variations in the diversity (namely, species richness and evenness) of early-, intermediate-, and late-successional species. Historical land management has led to an increase in compositional divergences among forest stands and the loss of late-successional forest species. PMID:26397707

  17. Global pattern of phylogenetic species composition of shark and its conservation priority.

    PubMed

    Chen, Hungyen; Kishino, Hirohisa

    2015-10-01

    The diversity of marine communities is in striking contrast with the diversity of terrestrial communities. In all oceans, species richness is low in tropical areas and high at latitudes between 20 and 40°. While species richness is a primary metric used in conservation and management strategies, it is important to take into account the complex phylogenetic patterns of species compositions within communities. We measured the phylogenetic skew and diversity of shark communities throughout the world. We found that shark communities in tropical seas were highly phylogenetically skewed, whereas temperate sea communities had phylogenetically diversified species compositions. Interestingly, although geographically distant from one another, tropical sea communities were all highly skewed toward requiem sharks (Carcharhinidae), hammerhead sharks (Sphyrnidae), and whale sharks (Rhincodon typus). Worldwide, the greatest phylogenetic evenness in terms of clades was found in the North Sea and coastal regions of countries in temperate zones, such as the United Kingdom, Ireland, southern Australia, and Chile. This study is the first to examine patterns of phylogenetic diversity of shark communities on a global scale. Our findings suggest that when establishing conservation activities, it is important to take full account of phylogenetic patterns of species composition and not solely use species richness as a target. Protecting areas of high phylogenetic diversity in sharks, which were identified in this study, could form a broader strategy for protecting other threatened marine species.

  18. Invasive algal mats degrade coral reef physical habitat quality

    NASA Astrophysics Data System (ADS)

    Martinez, Jonathan A.; Smith, Celia M.; Richmond, Robert H.

    2012-03-01

    Invasive species alter the ecology of marine ecosystems through a variety of mechanisms or combination of mechanisms. This study documented critical physical parameters altered by the invasive red macroalga Gracilaria salicornia in situ, including: reduced irradiance, increased sedimentation, and marked variation in diurnal dissolved oxygen and pH cycles in Kāne'ohe Bay, O'ahu, Hawai'i. Paired studies showed that algal mats reduced irradiance by 99% and doubled sediment accumulation. Several mats developed hypoxia and hyperoxia in the extreme minima and maxima, though there was no statistical difference detected in the mean or the variability of dissolved oxygen between different 30 min time points of 24 h cycles between algal mat-open reef pairs. The algal mat significantly acidified the water under the algal mat by decreasing pH by 0.10-0.13 pH units below open reef pH. A minimum of pH 7.47 occurred between 14 and 19 h after sunrise. Our combined results suggest that mats of G. salicornia can alter various physical parameters on a fine scale and time course not commonly detected. These changes in parameters give insight into the underlying basis for negative impact, and suggest new ways in which the presence of invasive species leads to decline of coral reef ecosystems.

  19. [Comparative analysis of phospholipid composition in erythrocytes of mouse-like rodents of different species].

    PubMed

    Shevchenko, O G; Shishkina, L N

    2011-01-01

    Comparative analysis of phospholipid quantitative composition of blood erythrocytes has been performed in white (laboratory mice and rats) and wild (tundra voles) mouse-like rodents. A non-characteristic of mammals low relative content of sphingomyelin is revealed in erythrocyte phospholipids in tundra voles. A hypothesis is put forward that the unique composition of erythrocyte lipids is a peculiar evolutionary developed strategy of adaptation aimed at survival under condition of constant circulation of agents of leptospirosis in populations of this species.

  20. Small herbivores suppress algal accumulation on Agatti atoll, Indian Ocean

    NASA Astrophysics Data System (ADS)

    Cernohorsky, Nicole H.; McClanahan, Timothy R.; Babu, Idrees; Horsák, Michal

    2015-12-01

    Despite large herbivorous fish being generally accepted as the main group responsible for preventing algal accumulation on coral reefs, few studies have experimentally examined the relative importance of herbivore size on algal communities. This study used exclusion cages with two different mesh sizes (1 × 1 cm and 6 × 6 cm) to investigate the impact of different-sized herbivores on algal accumulation rates on the shallow (<2 m) back-reef of Agatti atoll, Lakshadweep. The fine-mesh cages excluded all visible herbivores, which had rapid and lasting effects on the benthic communities, and, after 127 d of deployment, there was a visible and significant increase in algae (mainly macroalgae) with algal volume being 13 times greater than in adjacent open areas. The coarse-mesh cages excluded larger fishes (>8 cm body depth) while allowing smaller fishes to access the plots. In contrast to the conclusions of most previous studies, the exclusion of large herbivores had no significant effect on the accumulation of benthic algae and the amount of algae present within the coarse-mesh cages was relatively consistent throughout the experimental period (around 50 % coverage and 1-2 mm height). The difference in algal accumulation between the fine-mesh and coarse-mesh cages appears to be related to the actions of small individuals from 12 herbivorous fish species (0.17 ind. m-2 and 7.7 g m-2) that were able to enter through the coarse mesh. Although restricted to a single habitat, these results suggest that when present in sufficient densities and diversity, small herbivorous fishes can prevent the accumulation of algal biomass on coral reefs.

  1. BOREAS TGB-3 Plant Species Composition Data over the NSA Fen

    NASA Technical Reports Server (NTRS)

    Bubier, Jill L.; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

    2000-01-01

    The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-3) team collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains information about the composition of plant species that were within the collars used to measure Net Ecosystem Exchange of CO2 (NEE). The species composition was identified to understand the differences in NEE among the various plant communities in the NSA fen. The data were collected in July of 1994 and 1996. The data are contained in comma-delimited, ASCII files.

  2. Forest Age and Plant Species Composition Determine the Soil Fungal Community Composition in a Chinese Subtropical Forest

    PubMed Central

    Trogisch, Stefan; Both, Sabine; Scholten, Thomas; Bruelheide, Helge; Buscot, François

    2013-01-01

    Fungal diversity and community composition are mainly related to soil and vegetation factors. However, the relative contribution of the different drivers remains largely unexplored, especially in subtropical forest ecosystems. We studied the fungal diversity and community composition of soils sampled from 12 comparative study plots representing three forest age classes (Young: 10–40 yrs; Medium: 40–80 yrs; Old: ≥80 yrs) in Gutianshan National Nature Reserve in South-eastern China. Soil fungal communities were assessed employing ITS rDNA pyrotag sequencing. Members of Basidiomycota and Ascomycota dominated the fungal community, with 22 putative ectomycorrhizal fungal families, where Russulaceae and Thelephoraceae were the most abundant taxa. Analysis of similarity showed that the fungal community composition significantly differed among the three forest age classes. Forest age class, elevation of the study plots, and soil organic carbon (SOC) were the most important factors shaping the fungal community composition. We found a significant correlation between plant and fungal communities at different taxonomic and functional group levels, including a strong relationship between ectomycorrhizal fungal and non-ectomycorrhizal plant communities. Our results suggest that in subtropical forests, plant species community composition is the main driver of the soil fungal diversity and community composition. PMID:23826151

  3. Species composition and morphology of protostrongylids (Nematoda: Protostrongylidae) in ruminants from Bulgaria.

    PubMed

    Panayotova-Pencheva, Mariana Stancheva

    2011-10-01

    Lungs of 52 ruminants from different regions of Bulgaria, 16 from goats (Capra aegagrus f. domestica L.), 15 from sheep (Ovis ammon f. domestica L.), 11 from mouflons (Ovis musimon L.), and 10 from chamois (Rupicapra rupicapra L.), were investigated. The aim of the study was to determine the species composition of small lungworms in these hosts. The obtained results are summarized with those of previous studies, and a picture of the present status of the species composition of protostrongylids in ruminants from Bulgaria is forwarded. Morphometric data about the species Muellerius capillaris, Cystocaulus ocreatus, Neostrongylus linearis, Protostrongylus brevispiculum, and Protostrongylus rufescens are presented. The data on the morphology of these five species are supplied for the first time both for Bulgaria and the south-east part of the European continent.

  4. Tree species composition affects the abundance of rowan (Sorbus aucuparia L.) in urban forests in Finland.

    PubMed

    Hamberg, Leena; Lehvävirta, Susanna; Kotze, D Johan; Heikkinen, Juha

    2015-03-15

    Recent studies have shown a considerable increase in the abundance of rowan (Sorbus aucuparia) saplings in urban forests in Finland, yet the reasons for this increase are not well understood. Here we investigated whether canopy cover or tree species composition, i.e., the basal areas of different tree species in Norway spruce dominated urban forests, affects the abundances of rowan seedlings, saplings and trees. Altogether 24 urban forest patches were investigated. We sampled the number of rowan and other saplings, and calculated the basal areas of trees. We showed that rowan abundance was affected by tree species composition. The basal area of rowan trees (≥ 5 cm in diameter at breast height, dbh) decreased with increasing basal area of Norway spruce, while the cover of rowan seedlings increased with an increase in Norway spruce basal area. However, a decrease in the abundance of birch (Betula pendula) and an increase in the broad-leaved tree group (Acer platanoides, Alnus glutinosa, Alnus incana, Amelanchier spicata, Prunus padus, Quercus robur, Rhamnus frangula and Salix caprea) coincided with a decreasing number of rowans. Furthermore, rowan saplings were scarce in the vicinity of mature rowan trees. Although it seems that tree species composition has an effect on rowan, the relationship between rowan saplings and mature trees is complex, and therefore we conclude that regulating tree species composition is not an easy way to keep rowan thickets under control in urban forests in Finland.

  5. Estimating size and composition of biological communities by modeling the occurrence of species

    USGS Publications Warehouse

    Dorazio, R.M.; Royle, J. Andrew

    2005-01-01

    We develop a model that uses repeated observations of a biological community to estimate the number and composition of species in the community. Estimators of community-level attributes are constructed from model-based estimators of occurrence of individual species that incorporate imperfect detection of individuals. Data from the North American Breeding Bird Survey are analyzed to illustrate the variety of ecologically important quantities that are easily constructed and estimated using our model-based estimators of species occurrence. In particular, we compute site-specific estimates of species richness that honor classical notions of species-area relationships. We suggest extensions of our model to estimate maps of occurrence of individual species and to compute inferences related to the temporal and spatial dynamics of biological communities.

  6. Long-term changes in species composition and relative abundances of sharks at a provisioning site.

    PubMed

    Brunnschweiler, Juerg M; Abrantes, Kátya G; Barnett, Adam

    2014-01-01

    Diving with sharks, often in combination with food baiting/provisioning, has become an important product of today's recreational dive industry. Whereas the effects baiting/provisioning has on the behaviour and abundance of individual shark species are starting to become known, there is an almost complete lack of equivalent data from multi-species shark diving sites. In this study, changes in species composition and relative abundances were determined at the Shark Reef Marine Reserve, a multi-species shark feeding site in Fiji. Using direct observation sampling methods, eight species of sharks (bull shark Carcharhinus leucas, grey reef shark Carcharhinus amblyrhynchos, whitetip reef shark Triaenodon obesus, blacktip reef shark Carcharhinus melanopterus, tawny nurse shark Nebrius ferrugineus, silvertip shark Carcharhinus albimarginatus, sicklefin lemon shark Negaprion acutidens, and tiger shark Galeocerdo cuvier) displayed inter-annual site fidelity between 2003 and 2012. Encounter rates and/or relative abundances of some species changed over time, overall resulting in more individuals (mostly C. leucas) of fewer species being encountered on average on shark feeding dives at the end of the study period. Differences in shark community composition between the years 2004-2006 and 2007-2012 were evident, mostly because N. ferrugineus, C. albimarginatus and N. acutidens were much more abundant in 2004-2006 and very rare in the period of 2007-2012. Two explanations are offered for the observed changes in relative abundances over time, namely inter-specific interactions and operator-specific feeding protocols. Both, possibly in combination, are suggested to be important determinants of species composition and encounter rates, and relative abundances at this shark provisioning site in Fiji. This study, which includes the most species from a spatially confined shark provisioning site to date, suggests that long-term provisioning may result in competitive exclusion among shark

  7. Experimental dry-season N deposition alters species composition in southern Californian mediterranean-type shrublands.

    PubMed

    Vourlitis, George L; Pasquini, Sarah C

    2009-08-01

    Nitrogen (N) deposition in heavily polluted southern Californian shrublands is estimated to be 20-45 kg N x ha(-1) x yr(-1), but more exposed locales can receive as much as 145 kg N x ha(-1) x yr(-1). This large anthropogenic N input has the capacity to alter the composition of plant communities. We conducted N-fertilization experiments in chaparral and coastal sage scrub (CSS) stands over a five-year period to test the hypothesis that plant community composition would change in response to dry-season N addition because of an increase in the relative abundance of herbaceous plant species. Our results indicate that dry-season addition of N significantly altered the community composition of CSS but not chaparral. Contrary to our original hypothesis, changes in community composition were due to changes in the relative abundance of dominant shrubs and not herbaceous plant species. Given that community-level responses to changes in resource availability may take years to decades in order to fully materialize, our results suggest that continued dry-season input of N will cause even larger changes in community composition over time. These results have implications for plant species composition and diversity of mediterranean-type shrublands as N deposition increases with population growth and fossil-fuel use.

  8. Species composition of larvae cultured after anthelmintic treatment indicates reduced moxidectin susceptibility of immature Cylicocyclus species in horses.

    PubMed

    Kooyman, F N J; van Doorn, D C K; Geurden, T; Mughini-Gras, L; Ploeger, H W; Wagenaar, J A

    2016-08-30

    For the control of cyathostomins in horses, the macrocyclic lactones (MLs), moxidectin (MOX) and ivermectin (IVM) are the most commonly used anthelmintics. However, reduced activity, observed as shortening of the egg reappearance period (ERP) has been described. Shortening of the ERP may be caused by a decreased susceptibility of immature worms for MLs. Alternatively, immature worms may develop faster into egg producing adults as a result of repeated ML treatments. The species composition of the larval cultures obtained shortly after ML and pyrantel (PYR) treatment can confirm the hypothesis of decreased ML susceptibility, as this is often class-specific, whereas faster development would also occur after treatment with anthelmintics with a different mode of action. From 3 farms with a known history of shortened ERP, 8 horses per farm were selected and divided into 2 groups. The MOX-PYR-MOX group was treated twice with MOX (day 0 and 126) and once with PYR (day 84) and the IVM-PYR-IVM group was treated twice with IVM (day 0 and 98) and once with PYR (day 56). Cultured infective larvae (L3s) were counted and differentiated with the reverse line blot on pooled samples. Per cyathostomin species, the number of larvae per gram was calculated. The efficacy of all ML treatments was 100% and a shortened ERP was found on all 3 farms. The species composition of the larval cultures after ML treatment did not differ significantly from that after PYR treatment in the IVM-PYR-IVM group, but it did differ in the MOX-PYR-MOX group. The larval cultures obtained after MOX treatment consisted mostly of Cylicocyclus nassatus, while after PYR treatment Cylicostephanus longibursatus was the most abundant species. In the cultures from 42days after MOX treatment 6 cyathostomin species from 3 genera were found on the farm with the lowest activity (farm 1), while on the farm with the highest activity (farm 3) only 3 species from one genus were found in the same number of examined L3s. The

  9. Habitat selection determines abundance, richness and species composition of beetles in aquatic communities.

    PubMed

    Binckley, Christopher A; Resetarits, William J

    2005-09-22

    Distribution and abundance patterns at the community and metacommunity scale can result from two distinct mechanisms. Random dispersal followed by non-random, site-specific mortality (species sorting) is the dominant paradigm in community ecology, while habitat selection provides an alternative, largely unexplored, mechanism with different demographic consequences. Rather than differential mortality, habitat selection involves redistribution of individuals among habitat patches based on perceived rather than realized fitness, with perceptions driven by past selection. In particular, habitat preferences based on species composition can create distinct patterns of positive and negative covariance among species, generating more complex linkages among communities than with random dispersal models. In our experiments, the mere presence of predatory fishes, in the absence of any mortality, reduced abundance and species richness of aquatic beetles by up to 80% in comparison with the results from fishless controls. Beetle species' shared habitat preferences generated distinct patterns of species richness, species composition and total abundance, matching large-scale field patterns previously ascribed to random dispersal and differential mortality. Our results indicate that landscape-level patterns of distribution and species diversity can be driven to a large extent by habitat selection behaviour, a critical, but largely overlooked, mechanism of community and metacommunity assembly.

  10. Mass algal culture system

    DOEpatents

    Raymond, Lawrence P.

    1981-01-01

    An apparatus and process for the culture of algae in a liquid medium is disclosed. The medium circulates through an open trough and is exposed to an atmosphere which is temperature regulated. The nutrient content of the liquid medium is regulated to control the chemical composition growth and reproduction characteristics of the cultured algae. Before it is allowed to strike the medium, sunlight is passed through a filter to remove wavelengths which are not photosynthetically active. Heat energy can be recovered from the filter.

  11. Mass algal culture system

    DOEpatents

    Raymond, Lawrence P.

    1982-01-01

    An apparatus and process for the culture of algae in a liquid medium is disclosed. The medium circulates through an open trough and is exposed to an atmosphere which is temperature regulated. The nutrient content of the liquid medium is regulated to control the chemical composition growth and reproduction characteristics of the cultured algae. Before it is allowed to strike the medium, sunlight is passed through a filter to remove wavelengths which are not photosynthetically active. Heat energy can be recovered from the filter.

  12. Fungal farmers or algal escorts: lichen adaptation from the algal perspective.

    PubMed

    Piercey-Normore, Michele D; Deduke, Christopher

    2011-09-01

    lichens in the genus Lepraria. Altitude has been suggested to influence species distributions in a wide range of taxonomic groups. This is one of the first studies to illustrate an ecological guild, mainly for exposure to rainfall (ombrophiles and ombrophobes), with green algal lichens.

  13. The ghosts of trees past: savanna trees create enduring legacies in plant species composition.

    PubMed

    Stahlheber, Karen A; Crispin, Kimberly L; Anton, Cassidy; D'Antonio, Carla M

    2015-09-01

    Isolated trees in savannas worldwide are known to modify their local environment and interact directly with neighboring plants. Less is known about how related tree species differ in their impacts on surrounding communities, how the effects of trees vary between years, and how composition might change following loss of the tree. To address these knowledge gaps, we explored the following questions: How do savanna trees influence the surrounding composition of herbaceous plants? Is the influence of trees consistent across different species and years? How does this change following the death of the tree? We surveyed herbaceous species composition and environmental attributes surrounding living and dead evergreen and deciduous Quercus trees in California (USA) savannas across several years that differed in their total precipitation. Oak trees of all species created distinct, homogenous understory communities dominated by exotic grasses across several sites. The composition of the low-diversity understory communities showed less interannual variation than open grassland, despite a two-fold difference in precipitation between the driest and wettest year. Vegetation composition was correlated with variation in soil properties, which were strongly affected by trees. Oaks also influenced the communities beyond the edge of the crown, but this depended on site and oak species. Low-diversity understory communities persisted up to 43 years following the death of the tree. A gradual decline in the effect of trees on the physical, environment following death did not result in vegetation becoming more similar to open grassland over time. The presence of long-lasting legacies of past tree crowns highlights the difficulty of assigning control of the current distribution of herbaceous species in grassland to their contemporary environment.

  14. Residential yards as designer ecosystems: effects of yard management on land snail species composition.

    PubMed

    Bergey, Elizabeth A; Figueroa, Laura L

    2016-12-01

    Residential yards comprise the majority of green space in urban landscapes, yet are an understudied system because of access issues and because yards may be considered biologically depauperate. Yards are purposely created and managed and, hence, qualify as designer ecosystems, a term borrowed from restoration ecology. We investigated whether yard management (watering regime, mulching, and chemical use) or dog presence affected land snail assemblage composition and described the pattern of native vs. nonnative species among yards. Land snails form an appropriate model system for yard-scale studies because snails are speciose, common, and have limited mobility. We found 32 land snail species in our survey of 61 yards in Norman, Oklahoma, USA (population size of 118,000). Snail richness in individual yards averaged nine species, with a range of three to 14 species. Native snails were found in all yards and nonnative snails were found in all but one yard. Although some of the nine nonnative species were rare, the most frequently encountered species was the nonnative Triodopsis hopetonensis. All encountered nonnative species also occur in Oklahoma plant nurseries, indicating possible introduction through the plant trade. Yard-scale watering regime and the presence of dogs were associated with differences in snail species composition but not species richness. Pesticide use and mulch type had little, if any, association with snail composition. Effects may have been diluted by treating yards as units, whereas snails were concentrated in specific microhabitats, such as under shrubs. Soil type also influenced snail assemblages and acted at a scale larger than individual yards. Considering yards as designer ecosystems facilitates investigation of how local variation in management affects biota within yards and across the residential landscape, and highlights the importance of variation among residential yards in understanding patterns of urban biodiversity.

  15. Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts

    DOE PAGES

    Unkefer, Clifford Jay; Sayre, Richard Thomas; Magnuson, Jon K.; ...

    2016-06-21

    In 2010,when the National Alliance for Advanced Biofuels and Bioproducts (NAABB) consortium began, little was known about the molecular basis of algal biomass or oil production. Very few algal genome sequences were available and efforts to identify the best-producing wild species through bioprospecting approaches had largely stalled after the U.S. Department of Energy's Aquatic Species Program. This lack of knowledge included how reduced carbon was partitioned into storage products like triglycerides or starch and the role played by metabolite remodeling in the accumulation of energy-dense storage products. Furthermore, genetic transformation and metabolic engineering approaches to improve algal biomass and oilmore » yields were in their infancy. Genome sequencing and transcriptional profiling were becoming less expensive, however; and the tools to annotate gene expression profiles under various growth and engineered conditions were just starting to be developed for algae. It was in this context that an integrated algal biology program was introduced in the NAABB to address the greatest constraints limiting algal biomass yield. Our review describes the NAABB algal biology program, including hypotheses, research objectives, and strategies to move algal biology research into the twenty-first century and to realize the greatest potential of algae biomass systems to produce biofuels.« less

  16. Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts

    SciTech Connect

    Unkefer, Clifford Jay; Sayre, Richard Thomas; Magnuson, Jon K.; Anderson, Daniel B.; Baxter, Ivan; Blaby, Ian K.; Brown, Judith K.; Carleton, Michael; Cattolico, Rose Ann; Dale, Taraka T.; Devarenne, Timothy P.; Downes, C. Meghan; Dutcher, Susan K.; Fox, David Thomas; Goodenough, Ursula; Jaworski, Jan; Holladay, Jonathan E.; Kramer, David M.; Koppisch, Andrew Thomas; Lipton, Mary S.; Marrone, Babetta Louise; McCormick, Margaret; Molnar, Istvan; Mott, John Blaine; Ogden, Kimberly L.; Panisko, Ellen A.; Pellegrini, Matteo; Polle, Juergen; Richardson, James W.; Sabarsky, Martin; Starkenburg, Shawn Robert; Stormo, Gary D.; Teshima, Munehiro; Twary, Scott Nicholas; Unkefer, Pat J.; Yuan, Joshua S.; Olivares, Jose Antonio

    2016-06-21

    In 2010,when the National Alliance for Advanced Biofuels and Bioproducts (NAABB) consortium began, little was known about the molecular basis of algal biomass or oil production. Very few algal genome sequences were available and efforts to identify the best-producing wild species through bioprospecting approaches had largely stalled after the U.S. Department of Energy's Aquatic Species Program. This lack of knowledge included how reduced carbon was partitioned into storage products like triglycerides or starch and the role played by metabolite remodeling in the accumulation of energy-dense storage products. Furthermore, genetic transformation and metabolic engineering approaches to improve algal biomass and oil yields were in their infancy. Genome sequencing and transcriptional profiling were becoming less expensive, however; and the tools to annotate gene expression profiles under various growth and engineered conditions were just starting to be developed for algae. It was in this context that an integrated algal biology program was introduced in the NAABB to address the greatest constraints limiting algal biomass yield. Our review describes the NAABB algal biology program, including hypotheses, research objectives, and strategies to move algal biology research into the twenty-first century and to realize the greatest potential of algae biomass systems to produce biofuels.

  17. Vegetation in Bangalore's Slums: Composition, Species Distribution, Density, Diversity, and History

    NASA Astrophysics Data System (ADS)

    Gopal, Divya; Nagendra, Harini; Manthey, Michael

    2015-06-01

    There is widespread acknowledgement of the need for biodiversity and greening to be part of urban sustainability efforts. Yet we know little about greenery in the context of urban poverty, particularly in slums, which constitute a significant challenge for inclusive development in many rapidly growing cities. We assessed the composition, density, diversity, and species distribution of vegetation in 44 slums of Bangalore, India, comparing these to published studies on vegetation diversity in other land-use categories. Most trees were native to the region, as compared to other land-use categories such as parks and streets which are dominated by introduced species. Of the most frequently encountered tree species, Moringa oleifera and Cocos nucifera are important for food, while Ficus religiosa plays a critical cultural and religious role. Tree density and diversity were much lower in slums compared to richer residential neighborhoods. There are also differences in species preferences, with most plant (herb, shrub and vines) species in slums having economic, food, medicinal, or cultural use, while the species planted in richer residential areas are largely ornamental. Historic development has had an impact on species distribution, with older slums having larger sized tree species, while recent slums were dominated by smaller sized tree species with greater economic and food use. Extensive focus on planting trees and plant species with utility value is required in these congested neighborhoods, to provide livelihood support.

  18. Improved polymerase chain reaction technique for determining the species composition of Eimeria in poultry litter.

    PubMed

    Jenkins, M C; Miska, K; Klopp, S

    2006-12-01

    An improved polymerase chain reaction (PCR)-based method for determining the species composition of Eimeria in poultry litter was developed by incorporating species-specific internal standards in the assay. Internal standard molecules were prepared by fusing seven different Eimeria species-specific intervening transcribed sequence 1 (ITS1) rDNA primer pairs to a non-Eimeria DNA molecule and by cloning the hybrid DNA molecules into a plasmid. The internal DNA standards were then used in Eimeria-specific ITS 1 PCR, and they were found to be capable of detecting E. acervulina, E. maxima, E. praecox, and E. tenella oocysts isolated directly from poultry litter.

  19. Species composition and richness of amphibians in logged forests at Hulu Terengganu, Peninsular Malaysia

    NASA Astrophysics Data System (ADS)

    Izam, Nur Amalina Mohd; Ahmad, Amirrudin; Grismer, L. Lee; Saidin, Ahmad Nazri; Nor, Shukor Md.; Ahmad, Norhayati

    2016-11-01

    A study was done to compare amphibian species composition and richness between a disturbed forest due to logging/dam construction and a 30-year old logged forest at Hulu Terengganu, Peninsular Malaysia. This study was conducted from August to October 2014, using drift fenced-pitfall traps. The upstream (UP) and downstream riverine area (DP) of a dam called Puah Dam (PD) represented the disturbed forest habitat, while Sg. Deka Wildlife Reserve (SDWR) represented a 30-year old regenerating logged forest. There were six amphibian species found at SDWR, while four species were recorded at UP and DP.

  20. Fuel options from microalgae with representative chemical compositions

    SciTech Connect

    Feinberg, D. A.

    1984-07-01

    Representative species of microalgae are examined with respect to their reported chemical compositions. Each species is analyzed under a variety of culture conditions, with the objective being to characterize an optimum mixture of fuel products (e.g., methane, ethanol, methylester) which should be produced by the particular species. Historically the emphasis has been on the entire algal cell mass. Using the reported chemical composition for the representative species under specific sets of growth conditions, some conclusions can be drawn about the preferred fuel product conversion routes that could be employed. 10 references, 7 figures, 12 tables.

  1. Assessment of oil content and fatty acid composition variability in two economically important Hibiscus species.

    PubMed

    Wang, Ming Li; Morris, Brad; Tonnis, Brandon; Davis, Jerry; Pederson, Gary A

    2012-07-04

    The Hibiscus genus encompasses more than 300 species, but kenaf (Hibiscus cannabinus L.) and roselle (Hibiscus sabdariffa L.) are the two most economically important species within the genus. Seeds from these two Hibiscus species contain a relatively high amount of oil with two unusual fatty acids: dihydrosterculic and vernolic acids. The fatty acid composition in the oil can directly affect oil quality and its utilization. However, the variability in oil content and fatty acid composition for these two species is unclear. For these two species, 329 available accessions were acquired from the USDA germplasm collection. Their oil content and fatty acid composition were determined by nuclear magnetic resonance (NMR) and gas chromatography (GC), respectively. Using NMR and GC analyses, we found that Hibiscus seeds on average contained 18% oil and seed oil was composed of six major fatty acids (each >1%) and seven minor fatty acids (each <1%). Hibiscus cannabinus seeds contained significantly higher amounts of oil (18.14%), palmitic (20.75%), oleic (28.91%), vernolic acids (VA, 4.16%), and significantly lower amounts of stearic (3.96%), linoleic (39.49%), and dihydrosterculic acids (DHSA, 1.08%) than H. sabdariffa seeds (17.35%, 18.52%, 25.16%, 3.52%, 4.31%, 44.72%, and 1.57%, respectively). For edible oils, a higher oleic/linoleic (O/L) ratio and lower level of DHSA are preferred, and for industrial oils a high level of VA is preferred. Our results indicate that seeds from H. cannabinus may be of higher quality than H. sabdariffa seeds for these reasons. Significant variability in oil content and major fatty acids was also detected within both species. The variability in oil content and fatty acid composition revealed from this study will be useful for exploring seed utilization and developing new cultivars in these Hibiscus species.

  2. Five new species of dicyemid mesozoans (Dicyemida: Dicyemidae) from two Australian cuttlefish species, with comments on dicyemid fauna composition.

    PubMed

    Catalano, Sarah R

    2013-10-01

    Five new species of dicyemid mesozoans in two genera are described from two Australian cuttlefish species, Sepia apama Gray (giant Australian cuttlefish) and S. novaehollandiae Hoyle (nova cuttlefish): Dicyema coffinense n. sp. from S. apama collected from Coffin Bay, South Australia (SA), Australia; D. koinonum n. sp. from S. apama and S. novaehollandiae collected from Gulf St Vincent (GSV) and Spencer Gulf (SG), SA, Australia; D. multimegalum n. sp. from S. apama collected from Cronulla and North Bondi, New South Wales, Australia; D. vincentense n. sp. from S. novaehollandiae collected from GSV, SA, Australia; and Dicyemennea spencerense n. sp. from S. novaehollandiae and S. apama collected from SG, SA, Australia. Totals of 51 S. apama and 27 S. novaehollandiae individuals were examined, of which all except for four S. apama were infected by at least one dicyemid species. Dicyemid parasites were also observed in host individuals that were held in tanks for 2-3 months prior to examination, including nematogen-exclusive infections, leading to questions about persistence of dicyemids after host death and the mechanism responsible for the switch between a nematogen phase and a rhombogen phase. Variations in host size, calotte shape and collection locality are explored as predictors of differences in observed composition of the parasite fauna. In particular, dicyemid parasite fauna varied with host collection locality. As these parasites are highly host-species specific, their use as biological tags to assess cephalopod population structure using a combined morphological and molecular approach is discussed. This study increases the number of dicyemid species described from Australian cephalopods from five to ten, and from 117 to 122 species described worldwide.

  3. Bumble bees (Hymenoptera: Apidae: Bombus spp.) of interior Alaska: Species composition, distribution, seasonal biology, and parasites

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Despite the ecological and agricultural significance of bumble bees in Alaska, very little is known and published about this important group at the regional level. The objectives of this study were to provide baseline data on species composition, distribution, seasonal biology, and parasites of the ...

  4. Comparison of the chemical compositions and nutritive values of various pumpkin (Cucurbitaceae) species and parts.

    PubMed

    Kim, Mi Young; Kim, Eun Jin; Kim, Young-Nam; Choi, Changsun; Lee, Bog-Hieu

    2012-02-01

    Pumpkins have considerable variation in nutrient contents depending on the cultivation environment, species, or part. In this study, the general chemical compositions and some bioactive components, such as tocopherols, carotenoids, and β-sitosterol, were analyzed in three major species of pumpkin (Cucurbitaceae pepo, C. moschata, and C. maxima) grown in Korea and also in three parts (peel, flesh, and seed) of each pumpkin species. C. maxima had significantly more carbohydrate, protein, fat, and fiber than C. pepo or C. moschata (P < 0.05). The moisture content as well as the amino acid and arginine contents in all parts of the pumpkin was highest in C. pepo. The major fatty acids in the seeds were palmitic, stearic, oleic, and linoleic acids. C. pepo and C. moschata seeds had significantly more γ-tocopherol than C. maxima, whose seeds had the highest β-carotene content. C. pepo seeds had significantly more β-sitosterol than the others. Nutrient compositions differed considerably among the pumpkin species and parts. These results will be useful in updating the nutrient compositions of pumpkin in the Korean food composition database. Additional analyses of various pumpkins grown in different years and in different areas of Korea are needed.

  5. Influence of Tree Species Composition and Community Structure on Carbon Density in a Subtropical Forest

    PubMed Central

    Hu, Yanqiu; Su, Zhiyao; Li, Wenbin; Li, Jingpeng; Ke, Xiandong

    2015-01-01

    We assessed the impact of species composition and stand structure on the spatial variation of forest carbon density using data collected from a 4-ha plot in a subtropical forest in southern China. We found that 1) forest biomass carbon density significantly differed among communities, reflecting a significant effect of community structure and species composition on carbon accumulation; 2) soil organic carbon density increased whereas stand biomass carbon density decreased across communities, indicating that different mechanisms might account for the accumulation of stand biomass carbon and soil organic carbon in the subtropical forest; and 3) a small number of tree individuals of the medium- and large-diameter class contributed predominantly to biomass carbon accumulation in the community, whereas a large number of seedlings and saplings were responsible for a small proportion of the total forest carbon stock. These findings demonstrate that both biomass carbon and soil carbon density in the subtropical forest are sensitive to species composition and community structure, and that heterogeneity in species composition and stand structure should be taken into account to ensure accurate forest carbon accounting. PMID:26317523

  6. Changes in Seagrass Species Composition in Northwestern Gulf of Mexico Estuaries: Effects on Associated Seagrass Fauna

    PubMed Central

    Ray, Brandon R.; Johnson, Matthew W.; Cammarata, Kirk; Smee, Delbert L.

    2014-01-01

    The objective of this study was to measure the communities associated with different seagrass species to predict how shifts in seagrass species composition may affect associated fauna. In the northwestern Gulf of Mexico, coverage of the historically dominant shoal grass (Halodule wrightii) is decreasing, while coverage of manatee grass (Syringodium filiforme) and turtle grass (Thalassia testudinum) is increasing. We conducted a survey of fishes, crabs, and shrimp in monospecific beds of shoal, manatee, and turtle grass habitats of South Texas, USA to assess how changes in sea grass species composition would affect associated fauna. We measured seagrass parameters including shoot density, above ground biomass, epiphyte type, and epiphyte abundance to investigate relationships between faunal abundance and these seagrass parameters. We observed significant differences in communities among three seagrass species, even though these organisms are highly motile and could easily travel among the different seagrasses. Results showed species specific relationships among several different characteristics of the seagrass community and individual species abundance. More work is needed to discern the drivers of the complex relationships between individual seagrass species and their associated fauna. PMID:25229897

  7. A decade of predatory control of zooplankton species composition of Lake Michigan

    USGS Publications Warehouse

    Makarewicz, Joseph C.; Bertram, Paul; Lewis, Theodore; Brown, Edward H.

    1995-01-01

    From 1983 to 1992, 71 species representing 38 genera from the Calanoida, Cladocera, Cyclopoida, Mysidacea, Rotifera, Mollusca and Harpacticoida comprised the offshore zooplankton community of Lake Michigan. Our data demonstrate that the composition and abundance of the calanoid community after 1983 is not unlike that of 1960s and that species diversity of the calanoid community is more diverse than the cladoceran community in the 1990s as compared to the early 1980s. Even though the relative biomass of the cladocerans has remained similar over the 1983-1993 period, the species diversity and evenness of the Cladocera community in the early 1990s is unlike anything that has been previously reported for Lake Michigan. Cladocera dominance is centered in one species, Daphnia galeata mendotae, and only three species of Cladocera were observed in the pelagic region of the lake in 1991 and 1992. Nutrient levels, phytoplankton biomass, and the abundance of planktivorous alewife and bloater chub and Bythotrephes are examined as possible causes of these changes in zooplankton species composition. The increase in Rotifera biomass, but not Crustacea, was correlated with an increase in relative biomass of unicellular algae. Food web models suggest Bythotrephes will cause Lake Michigan's plankton to return to a community similar to that of the 1970s; that is Diaptomus dominated. Such a change has occurred. However, correlational analysis suggest that alewife and bloater chubs (especially juveniles) are affecting size and biomass of larger species of zooplankton as well as Bythotrephes.

  8. Changes in seagrass species composition in northwestern Gulf of Mexico estuaries: effects on associated seagrass fauna.

    PubMed

    Ray, Brandon R; Johnson, Matthew W; Cammarata, Kirk; Smee, Delbert L

    2014-01-01

    The objective of this study was to measure the communities associated with different seagrass species to predict how shifts in seagrass species composition may affect associated fauna. In the northwestern Gulf of Mexico, coverage of the historically dominant shoal grass (Halodule wrightii) is decreasing, while coverage of manatee grass (Syringodium filiforme) and turtle grass (Thalassia testudinum) is increasing. We conducted a survey of fishes, crabs, and shrimp in monospecific beds of shoal, manatee, and turtle grass habitats of South Texas, USA to assess how changes in sea grass species composition would affect associated fauna. We measured seagrass parameters including shoot density, above ground biomass, epiphyte type, and epiphyte abundance to investigate relationships between faunal abundance and these seagrass parameters. We observed significant differences in communities among three seagrass species, even though these organisms are highly motile and could easily travel among the different seagrasses. Results showed species specific relationships among several different characteristics of the seagrass community and individual species abundance. More work is needed to discern the drivers of the complex relationships between individual seagrass species and their associated fauna.

  9. Macrophyte Species Drive the Variation of Bacterioplankton Community Composition in a Shallow Freshwater Lake

    PubMed Central

    Zeng, Jin; Bian, Yuanqi; Xing, Peng

    2012-01-01

    Macrophytes play an important role in structuring aquatic ecosystems. In this study, we explored whether macrophyte species are involved in determining the bacterioplankton community composition (BCC) in shallow freshwater lakes. The BCC in field areas dominated by different macrophyte species in Taihu Lake, a large, shallow freshwater lake, was investigated over a 1-year period. Subsequently, microcosm experiments were conducted to determine if single species of different types of macrophytes in an isolated environment would alter the BCC. Denaturing gradient gel electrophoresis (DGGE), followed by cloning and sequence analysis of selected samples, was employed to analyze the BCC. The DGGE results of the field investigations indicated that the BCC changed significantly from season to season and that the presence of different macrophyte species resulted in lower BCC similarities in the summer and fall. LIBSHUFF analysis of selected clone libraries from the summer demonstrated different BCCs in the water column surrounding different macrophytes. Relative to the field observations, the microcosm studies indicated that the BCC differed more pronouncedly when associated with different species of macrophytes, which was also supported by LIBSHUFF analysis of the selected clone libraries. Overall, this study suggested that macrophyte species might be an important factor in determining the composition of bacterial communities in this shallow freshwater lake and that the species-specific influence of macrophytes on BCC is variable with the season and distance. PMID:22038598

  10. Development and optimization of biofilm based algal cultivation

    NASA Astrophysics Data System (ADS)

    Gross, Martin Anthony

    This dissertation describes research done on biofilm based algal cultivation systems. The system that was developed in this work is the revolving algal biofilm cultivation system (RAB). A raceway-retrofit, and a trough-based pilot-scale RAB system were developed and investigated. Each of the systems significantly outperformed a control raceway pond in side-by-side tests. Furthermore the RAB system was found to require significantly less water than the raceway pond based cultivation system. Lastly a TEA/LCA analysis was conducted to evaluate the economic and life cycle of the RAB cultivation system in comparison to raceway pond. It was found that the RAB system was able to grow algae at a lower cost and was shown to be profitable at a smaller scale than the raceway pond style of algal cultivation. Additionally the RAB system was projected to have lower GHG emissions, and better energy and water use efficiencies in comparison to a raceway pond system. Furthermore, fundamental research was conducted to identify the optimal material for algae to attach on. A total of 28 materials with a smooth surface were tested for initial cell colonization and it was found that the tetradecane contact angle of the materials had a good correlation with cell attachment. The effects of surface texture were evaluated using mesh materials (nylon, polypropylene, high density polyethylene, polyester, aluminum, and stainless steel) with openings ranging from 0.05--6.40 mm. It was found that both surface texture and material composition influence algal attachment.

  11. Algal biofuels: challenges and opportunities.

    PubMed

    Leite, Gustavo B; Abdelaziz, Ahmed E M; Hallenbeck, Patrick C

    2013-10-01

    Biodiesel production using microalgae is attractive in a number of respects. Here a number of pros and cons to using microalgae for biofuels production are reviewed. Algal cultivation can be carried out using non-arable land and non-potable water with simple nutrient supply. In addition, algal biomass productivities are much higher than those of vascular plants and the extractable content of lipids that can be usefully converted to biodiesel, triacylglycerols (TAGs) can be much higher than that of the oil seeds now used for first generation biodiesel. On the other hand, practical, cost-effective production of biofuels from microalgae requires that a number of obstacles be overcome. These include the development of low-cost, effective growth systems, efficient and energy saving harvesting techniques, and methods for oil extraction and conversion that are environmentally benign and cost-effective. Promising recent advances in these areas are highlighted.

  12. Taxonomical Establishment and Compositional Studies of a New Cordyceps (Ascomycetes) Species from the Northwest Himalayas (India).

    PubMed

    Sharma, Sapan Kumar; Gautam, Nandini; Atri, Narender Singh; Dhancholia, Subhash

    2016-01-01

    During a frequent survey in the northwest Indian Himalayan region, a new species-Cordyceps macleodganensis-was encountered. This species is described on the basis of its macromorphological features, microscopic details, and internal transcribed spacer sequencing. This species showed only 90% resemblance to Cordyceps gracilis. The chemical composition of the mycelium showed protein (14.95 ± 0.2%) and carbohydrates (59.21 ± 3.8%) as the major nutrients. This species showed appreciable amounts of P-carotene, lycopene, phenolic compounds, polysaccharides, and flavonoids. Mycelial culture of this species showed higher effectiveness for ferric-reducing antioxidant power, DPPH radical scavenging activity, ferrous ion-chelating activity, and scavenging ability on superoxide anion-derived radicals, calculated by half-maximal effective concentrations.

  13. Enhanced Production of Green Tide Algal Biomass through Additional Carbon Supply

    PubMed Central

    de Paula Silva, Pedro H.; Paul, Nicholas A.; de Nys, Rocky; Mata, Leonardo

    2013-01-01

    Intensive algal cultivation usually requires a high flux of dissolved inorganic carbon (Ci) to support productivity, particularly for high density algal cultures. Carbon dioxide (CO2) enrichment can be used to overcome Ci limitation and enhance productivity of algae in intensive culture, however, it is unclear whether algal species with the ability to utilise bicarbonate (HCO3−) as a carbon source for photosynthesis will benefit from CO2 enrichment. This study quantified the HCO3− affinity of three green tide algal species, Cladophora coelothrix, Cladophora patentiramea and Chaetomorpha linum, targeted for biomass and bioenergy production. Subsequently, we quantified productivity and carbon, nitrogen and ash content in response to CO2 enrichment. All three species had similar high pH compensation points (9.7–9.9), and grew at similar rates up to pH 9, demonstrating HCO3− utilization. Algal cultures enriched with CO2 as a carbon source had 30% more total Ci available, supplying twenty five times more CO2 than the control. This higher Ci significantly enhanced the productivity of Cladophora coelothrix (26%), Chaetomorpha linum (24%) and to a lesser extent for Cladophora patentiramea (11%), compared to controls. We demonstrated that supplying carbon as CO2 can enhance the productivity of targeted green tide algal species under intensive culture, despite their clear ability to utilise HCO3−. PMID:24324672

  14. Enhanced production of green tide algal biomass through additional carbon supply.

    PubMed

    de Paula Silva, Pedro H; Paul, Nicholas A; de Nys, Rocky; Mata, Leonardo

    2013-01-01

    Intensive algal cultivation usually requires a high flux of dissolved inorganic carbon (Ci) to support productivity, particularly for high density algal cultures. Carbon dioxide (CO2) enrichment can be used to overcome Ci limitation and enhance productivity of algae in intensive culture, however, it is unclear whether algal species with the ability to utilise bicarbonate (HCO3 (-)) as a carbon source for photosynthesis will benefit from CO2 enrichment. This study quantified the HCO3 (-) affinity of three green tide algal species, Cladophora coelothrix, Cladophora patentiramea and Chaetomorpha linum, targeted for biomass and bioenergy production. Subsequently, we quantified productivity and carbon, nitrogen and ash content in response to CO2 enrichment. All three species had similar high pH compensation points (9.7-9.9), and grew at similar rates up to pH 9, demonstrating HCO3 (-) utilization. Algal cultures enriched with CO2 as a carbon source had 30% more total Ci available, supplying twenty five times more CO2 than the control. This higher Ci significantly enhanced the productivity of Cladophora coelothrix (26%), Chaetomorpha linum (24%) and to a lesser extent for Cladophora patentiramea (11%), compared to controls. We demonstrated that supplying carbon as CO2 can enhance the productivity of targeted green tide algal species under intensive culture, despite their clear ability to utilise HCO3 (-).

  15. Chemical composition and larvicidal activity of several essential oils from Hypericum species from Tunisia.

    PubMed

    Rouis, Zyed; Laamari, Ali; Abid, Nabil; Elaissi, Ameur; Cioni, Pier Luigi; Flamini, Guido; Aouni, Mahjoub

    2013-02-01

    The chemical composition of the essential oils extracted from some Tunisian Hypericum species and their larvicidal activity against Culex pipiens larvae were evaluated. The chemical compositions of the essential oils from the aerial plant parts were analyzed using gas chromatography-mass spectrometry. One hundred and thirty-four compounds were identified, ranging between 85.1 and 95.4 % of the oil's composition. The components were monoterpene hydrocarbons, oxygenated monoterpenes, sesquiterpene hydrocarbons, oxygenated sesquiterpenes, non-terpenic hydrocarbons, and others. The larvicidal activity of the essential oils was evaluated using a method recommended by WHO. Larvicidal tests revealed that essential oils from the Hypericum species have a significant larvicidal activity against C. pipiens, with LC(50) ranging between 102.82 and 194.70 ppm. The most powerful essential oils against these larvae were Hypericum tomentosum and Hypericum humifusum samples, followed by the essential oil of Hypericum perforatum.

  16. Effect of Tetracycline Antibiotics on Performance and Microbial Community of Algal Photo-Bioreactor.

    PubMed

    Taşkan, Ergin

    2016-07-01

    Tetracycline antibiotics have been increasingly used in medical applications and have been found in wastewater treatment plants as a result of human and industrial activities. This study investigates the combined effects of tetracycline antibiotics on the performance of an algal photo-bioreactor operated under different antibiotic concentrations in the ranges of 0.25 to 30 mg/L and considers the inhibition of algal growth, carbon and nutrient removal rates, and eukaryotic and cyanobacterial algal community changes. The results indicated that increases in the concentration of tetracycline mixtures have adverse effects on the algal community and the performance of a photo-bioreactor, and the eukaryotic algae species were more sensitive to tetracycline antibiotics than were the cyanobacterial species. Cultivation tests showed that approximately 94 % growth inhibition of mixed algae occurred at 30 mg/L.

  17. Process development for the production of bioethanol from waste algal biomass of Gracilaria verrucosa.

    PubMed

    Shukla, Rishikesh; Kumar, Manoj; Chakraborty, Subhojit; Gupta, Rishi; Kumar, Savindra; Sahoo, Dinabandhu; Kuhad, Ramesh Chander

    2016-11-01

    The algal biomass of different species of Gracilaria were collected from coasts of Orissa and Tamil Nadu, India and characterized biochemically. Among various species, G. verrucosa was found to be better in terms of total carbohydrate content (56.65%) and hence selected for further studies. The agar was extracted from algal biomass and the residual pulp was enzymatically hydrolyzed. The optimization of algal pulp hydrolysis for various parameters revealed a maximum sugar release of 75.8mg/ml with 63% saccharification yield. The fermentation of enzymatic hydrolysate of algal pulp was optimized and 8% (v/v) inoculum size, 12h inoculum age, pH 5.0 were found to be optimum parameters for maximum ethanol concentration (27.2g/L) after 12h. The process of enzymatic hydrolysis and fermentation were successfully scaled up to 2L bioreactor scale.

  18. Big plants — Do they affect neighbourhood species richness and composition in herbaceous vegetation?

    NASA Astrophysics Data System (ADS)

    Aarssen, Lonnie W.; Schamp, Brandon S.; Wight, Stephanie

    2014-02-01

    According to traditional theory, success in competition between plant species generally involves a 'size-advantage'. We predicted therefore that plants with larger body size should impose greater limits on the number of species — especially relatively small ones — that can reside within their immediate neighbourhoods. Species composition was compared within local neighbourhoods surrounding target plants of different sizes belonging to one of the largest herbaceous species found within old-field vegetation in eastern Ontario Canada — Centaurea jacea. Resident species density was generally greater within immediate 'inner' target neighbourhoods than within adjacent circular 'outer' neighbourhoods, and mean body size of resident neighbour species was unrelated to increases in target plant size. As target plant size increased, the proportion of resident neighbour species that were reproductive increased. Relatively big plants of C. jacea do not limit the number or the proportion of reproductive species that can coexist within their immediate neighbourhoods, nor do they cause local exclusion of relatively small species from these neighbourhoods. These results fail to support the 'size-advantage' hypothesis and are more consistent with the 'reproductive economy advantage' hypothesis: success under intense competition is promoted by capacity to recruit offspring that — despite severe suppression — are able to reach their minimum body size needed for reproduction, and hence produce grand-offspring for the next generation. The latter is facilitated by a relatively small minimum reproductive threshold size, which is generally negatively correlated with a relatively large maximum potential body size.

  19. Richness and species composition of arboreal arthropods affected by nutrients and predators: a press experiment.

    PubMed

    Gruner, Daniel S; Taylor, Andrew D

    2006-04-01

    A longstanding goal for ecologists is to understand the processes that maintain biological diversity in communities, yet few studies have investigated the combined effects of predators and resources on biodiversity in natural ecosystems. We fertilized nutrient limited plots and excluded insectivorous birds in a randomized block design, and examined the impacts on arthropods associated with the dominant tree in the Hawaiian Islands, Metrosideros polymorpha (Myrtaceae). After 33 months, the species load (per foliage mass) of herbivores and carnivores increased with fertilization, but rarified richness (standardized to abundance) did not change. Fertilization depressed species richness of arboreal detritivores, and carnivore richness dropped in caged, unfertilized plots, both because of the increased dominance of common, introduced species with treatments. Herbivore species abundance distributions were more equitable than other trophic levels following treatments, and fertilization added specialized native species without changing relativized species richness. Overall, bird removal and nutrient addition treatments on arthropod richness acted largely independently, but with countervailing influences that obscured distinct top-down and bottom-up effects on different trophic levels. This study demonstrates that species composition, biological invasions, and the individuality of species traits may complicate efforts to predict the interactive effects of resources and predation on species diversity in food webs.

  20. Cellular fatty acid compositions and isoprenoid quinone contents of 23 Legionella species.

    PubMed Central

    Lambert, M A; Moss, C W

    1989-01-01

    The cellular fatty acid compositions and ubiquinone contents of 182 Legionella strains representing 23 species were determined by capillary gas-liquid chromatography and reverse-phase high-performance liquid chromatography, respectively. Except for the type strain of Legionella erythra (ATCC 35303T), all Legionella species contained large (40 to 90%) amounts of branched-chain fatty acids and only trace to small (less than 0.5 to 5%) amounts of ester-linked hydroxy acids. The 23 species were placed in three major fatty acid groups on the basis of differences in the relative amounts of 14-methylpentadecanoic (Ci16:0), hexadecanoic (C16:1), and 12-methyltetradecanoic (Ca15:0) acids. All Legionella species contained ubiquinones with 9 to 14 isoprene units in the side chains and were divided into five different ubiquinone groups. The species were further differentiated into 16 groups on the basis of qualitative and quantitative differences in their fatty acid compositions and ubiquinone contents. Both of these chemical characteristics can be used to distinguish Legionella species from other gram-negative bacteria and rapidly and accurately identify suspected isolates before serologic and other tests are done. PMID:2715320

  1. Measuring size and composition of species pools: a comparison of dark diversity estimates.

    PubMed

    de Bello, Francesco; Fibich, Pavel; Zelený, David; Kopecký, Martin; Mudrák, Ondřej; Chytrý, Milan; Pyšek, Petr; Wild, Jan; Michalcová, Dana; Sádlo, Jiří; Šmilauer, Petr; Lepš, Jan; Pärtel, Meelis

    2016-06-01

    Ecological theory and biodiversity conservation have traditionally relied on the number of species recorded at a site, but it is agreed that site richness represents only a portion of the species that can inhabit particular ecological conditions, that is, the habitat-specific species pool. Knowledge of the species pool at different sites enables meaningful comparisons of biodiversity and provides insights into processes of biodiversity formation. Empirical studies, however, are limited due to conceptual and methodological difficulties in determining both the size and composition of the absent part of species pools, the so-called dark diversity. We used >50,000 vegetation plots from 18 types of habitats throughout the Czech Republic, most of which served as a training dataset and 1083 as a subset of test sites. These data were used to compare predicted results from three quantitative methods with those of previously published expert estimates based on species habitat preferences: (1) species co-occurrence based on Beals' smoothing approach; (2) species ecological requirements, with envelopes around community mean Ellenberg values; and (3) species distribution models, using species environmental niches modeled by Biomod software. Dark diversity estimates were compared at both plot and habitat levels, and each method was applied in different configurations. While there were some differences in the results obtained by different methods, particularly at the plot level, there was a clear convergence, especially at the habitat level. The better convergence at the habitat level reflects less variation in local environmental conditions, whereas variation at the plot level is an effect of each particular method. The co-occurrence agreed closest the expert estimate, followed by the method based on species ecological requirements. We conclude that several analytical methods can estimate species pools of given habitats. However, the strengths and weaknesses of different methods

  2. Environmental gradients explain species richness and community composition of coastal breeding birds in the Baltic Sea.

    PubMed

    Nord, Maria; Forslund, Pär

    2015-01-01

    Scientifically-based systematic conservation planning for reserve design requires knowledge of species richness patterns and how these are related to environmental gradients. In this study, we explore a large inventory of coastal breeding birds, in total 48 species, sampled in 4646 1 km2 squares which covered a large archipelago in the Baltic Sea on the east coast of Sweden. We analysed how species richness (α diversity) and community composition (β diversity) of two groups of coastal breeding birds (specialists, i.e. obligate coastal breeders; generalists, i.e. facultative coastal breeders) were affected by distance to open sea, land area, shoreline length and archipelago width. The total number of species per square increased with increasing shoreline length, but increasing land area counteracted this effect in specialists. The number of specialist bird species per square increased with decreasing distance to open sea, while the opposite was true for the generalists. Differences in community composition between squares were associated with differences in land area and distance to open sea, both when considering all species pooled and each group separately. Fourteen species were nationally red-listed, and showed similar relationships to the environmental gradients as did all species, specialists and generalists. We suggest that availability of suitable breeding habitats, and probably also proximity to feeding areas, explain much of the observed spatial distributions of coastal birds in this study. Our findings have important implications for systematic conservation planning of coastal breeding birds. In particular, we provide information on where coastal breeding birds occur and which environments they seem to prefer. Small land areas with long shorelines are highly valuable both in general and for red-listed species. Thus, such areas should be prioritized for protection against human disturbance and used by management in reserve selection.

  3. Environmental Gradients Explain Species Richness and Community Composition of Coastal Breeding Birds in the Baltic Sea

    PubMed Central

    Nord, Maria; Forslund, Pär

    2015-01-01

    Scientifically-based systematic conservation planning for reserve design requires knowledge of species richness patterns and how these are related to environmental gradients. In this study, we explore a large inventory of coastal breeding birds, in total 48 species, sampled in 4646 1 km2 squares which covered a large archipelago in the Baltic Sea on the east coast of Sweden. We analysed how species richness (α diversity) and community composition (β diversity) of two groups of coastal breeding birds (specialists, i.e. obligate coastal breeders; generalists, i.e. facultative coastal breeders) were affected by distance to open sea, land area, shoreline length and archipelago width. The total number of species per square increased with increasing shoreline length, but increasing land area counteracted this effect in specialists. The number of specialist bird species per square increased with decreasing distance to open sea, while the opposite was true for the generalists. Differences in community composition between squares were associated with differences in land area and distance to open sea, both when considering all species pooled and each group separately. Fourteen species were nationally red-listed, and showed similar relationships to the environmental gradients as did all species, specialists and generalists. We suggest that availability of suitable breeding habitats, and probably also proximity to feeding areas, explain much of the observed spatial distributions of coastal birds in this study. Our findings have important implications for systematic conservation planning of coastal breeding birds. In particular, we provide information on where coastal breeding birds occur and which environments they seem to prefer. Small land areas with long shorelines are highly valuable both in general and for red-listed species. Thus, such areas should be prioritized for protection against human disturbance and used by management in reserve selection. PMID:25714432

  4. Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia

    NASA Astrophysics Data System (ADS)

    Bonaldo, R. M.; Bellwood, D. R.

    2011-06-01

    Of all benthic components on tropical reefs, algal turfs are the most widespread and the main source of primary productivity. We compared the importance of grazing by herbivores on algal turfs on two zones with marked differences in terms of benthic composition, herbivore biomass and grazing pressure, the inner flat and crest, of an inshore reef on the Great Barrier Reef, Australia. A combination of herbivore exclusion cages and transplants of coral rubble covered by algal turfs between reef zones was used to examine changes in algal turfs over a 4-day experimental period. In situ crest turfs had lower algal height, sediment loads and particulate content than reef flat turfs. Caged samples on the crest exhibited an increase in all three variables. In contrast, in situ and caged treatments on the flat presented algal turfs with similar values for the three analysed variables, with high algal height and heavy particulate and sediment loads. In the absence of cages, reef flat turfs transplanted to the crest had decreased algal height, total particulate material and particulate inorganic content, while the opposite was found in crest turf samples transplanted to the flat. Our results highlight the dynamic nature of algal turfs and the clear differences in the relative importance of herbivory in shaping turf length and sediment load between the reef crest and inner flat.

  5. [Algal community structure and water quality assessment on drawdown area of Kaixian waters in Three Gorges Reservoir during winter storage period].

    PubMed

    Guo, Jing-Song; Xie, Dan; Li, Zhe; Chen, Yuan; Sun, Zhi-Yu; Chen, Yong-Bo; Long, Man

    2012-04-01

    The old town area of Kaixian county was flooded and showed reservoir characteristics after the water level of Three Gorges Reservoir got 172. 8 m in December 2008. The aquatic ecology and nutritional status of Kaixian drawdown area after water storage are still rarely reported. To understand the current water environment and changes in algal community structure of Kaixian drawdown area after 172.8 m water level, the algal composition, abundance, biomass distribution and changes of its sampling spots including Hanfeng Lake were observed twice during winter storage period in January and December 2009. The trends in phytoplankton community structure were analyzed and the water quality assessment of nutritional status was carried out. The results indicated that 6 phylums, 37 genera, 69 species of phytoplankton in total were identified in the two sampling, and the dominant species were Dinophyta and Cryptophyta. The cell density and biomass in December 2009 were lower than those in January 2009. The evaluation results of algal population structure and pollution indicators showed that the nutrition level of Kaixian drawdown area during the winter storage period was mesotrophic to eutrophic type, while diversity analysis result indicated moderate pollution.

  6. Anopheles culicifacies: siblings species composition and its relationship to malaria incidence.

    PubMed

    Subbarao, S K; Vasantha, K; Raghavendra, K; Sharma, V P; Sharma, G K

    1988-03-01

    Entomological and epidemiological surveys in May, August and November 1985 and March 1986 were conducted in villages in Bulandshahr, a western district in Uttar Pradesh and in three eastern districts, Jaunpur, Ballia and Saran. In Bulandshahr, Anopheles culicifacies sibling species A and B were found, with a predominance of species A. Both Plasmodium vivax and P. falciparum were present and the malaria incidence remained high (SPR, 6-50%) indicating an active transmission. In contrast, in three eastern districts predominance of species B with an occasional occurrence of species A was observed. Malaria cases were almost absent in Ballia and Saran and in Jaunpur 10.3% slide positivity rate was observed in May but in later surveys cases were considerably lower (SPR, 0.5-2.9%) indicating the absence of indigenous transmission. In the eastern districts, malaria parasites are regularly brought in from endemic areas by the migrant labor population. Although An. culicifacies s.l. occurs in both the areas, the difference in malaria incidence appears to be due to the difference in the composition of the sibling species which is, the predominant presence of species A in the western district and its absence in eastern districts. This indicates that species A is responsible for active malaria transmission while species B is not.

  7. Helminth community composition, structure, and pattern in six dove species (Columbiformes: Columbidae) of South Texas.

    PubMed

    Smith, Autumn J; Fedynich, Alan M

    2012-02-01

    The helminth community composition and structure of 6 species of columbids residing in south Texas are reported and compared herein. Sixty individuals of the following species, rock pigeons (Columba livia [RP]), mourning doves (Zenaida macroura [MD]), Eurasian collared-doves (Streptopelia decaocto [ECD]), white-winged doves (Zenaida asiatica [WWD]), and common ground doves (Columbina passerina [CGD]), and 48 Inca doves (Columbina inca [ID]) were collected during the summer of 2006 and examined for helminths. Twelve helminth species were found (9 nematodes and 3 cestodes), representing 486 individuals. Nematodes numerically dominated the component community in all host species. Overall, helminth prevalence was similar among host sex within all dove species. However, prevalence of Skrjabinia bonini and Hymenolepis sp. in RPs was significantly different among host age groups (P = 0.01, P = 0.0002, respectively). Likewise, prevalence of Killigrewia delafondi was higher (P = 0.0001) in adult WWDs. Based on percent similarity and Jaccard's coefficient of community indices, helminth component communities were dissimilar, and the number of shared helminth species varied among host species. Data from this study suggest that the environment surrounding preferred host habitat and foraging strategies of each host species is the driving force behind helminth component communities. This study emphasizes the importance of examining co-occurring hosts at both local and regional scales to elucidate helminth community structure and patterns.

  8. Phospholipid composition of plasma and erythrocyte membranes in animal species by 31P NMR.

    PubMed

    Ferlazzo, Alida Maria; Bruschetta, Giuseppe; Di Pietro, Patrizia; Medica, Pietro; Notti, Anna; Rotondo, Enrico

    2011-12-01

    The aim of this study was to provide basal values of phospholipid (PL) composition in different animal species by 31P NMR analysis using detergents. This fast and accurate method allowed a quantitative analysis of PLs without any previous separation. Plasma and erythrocyte membrane PLs were investigated in mammals (pig, cow, horse). Moreover, for the first time, the composition of plasma PLs in avian (chicken and ostrich) was performed by 31P NMR. Significant qualitative and quantitative interspecies differences in plasma PL levels were found. Phosphatidilcholine (PC) and sphingomyelin (SPH) levels were significantly higher (P < 0.001) in chicken plasma than all the other species tested. In erythrocytes, cow PC and phosphatidylcholine diarachidoyl were significantly lower (P < 0.001) than for pigs and horses, whereas pig PC presented intermediate values among cows and horses. Inorganic phosphate and 2,3-diphosphoglycerate levels were also significantly different between the species under investigation. The [SPH/total PLs] molar ratios in erythrocytes confirmed interspecies differences in phospholipid composition while the PC/SPH molar ratios could be related to a distinct erythrocyte flexibility and aggregability. Diet and nutrition may contribute primarily to the interspecies differences in plasma PL amounts detected. Significant differences between chicken plasma PC and SPH levels and those of the other animal species could be ascribed to a fat metabolism specific to egg production.

  9. Combined effect of predatory zooplankton and allelopathic aquatic macrophytes on algal suppression.

    PubMed

    Zuo, Shengpeng; Wan, Kun; Ma, Sumin

    2015-01-01

    The present study evaluated the combined effects of four typical predatory zooplankton and allelopathic aquatic macrophytes on algal control in a microcosm system. It would determine the effects of diverse species and biological restoration on the growth of harmful water-bloom microalgae in great lakes polluted by excess nutrients. It was found that the mixtures of each zooplankton and the floating plant Nymphoides peltatum had stronger inhibitory effects on harmful water-bloom microalgae than the individual species in clean or eutrophic water bodies. In addition, a community of four zooplankton types had a synergistic effect on algal inhibition. Algal suppression by the zooplankton community was enhanced significantly when the macrophyte was co-cultured in the microcosm. Furthermore, Chlorella pyrenoidosa was more susceptible than Microcystis aeruginosa when exposed to grazing by zooplankton and the allelopathic potential of the macrophyte. Algal inhibition was also weaker in eutrophic conditions compared with the control. These findings indicate that diverse species may enhance algal inhibition. Therefore, it is necessary to restore biological diversity and rebuild an ecologically balanced food chain or web to facilitate the control of harmful algal blooms in eutrophic lakes.

  10. Air pollutant production by algal cell cultures

    NASA Technical Reports Server (NTRS)

    Fong, F.; Funkhouser, E. A.

    1982-01-01

    The production of phytotoxic air pollutants by cultures of Chlorella vulgaris and Euglena gracilis is considered. Algal and plant culture systems, a fumigation system, and ethylene, ethane, cyanide, and nitrogen oxides assays are discussed. Bean, tobacco, mustard green, cantaloupe and wheat plants all showed injury when fumigated with algal gases for 4 hours. Only coleus plants showed any resistance to the gases. It is found that a closed or recycled air effluent system does not produce plant injury from algal air pollutants.

  11. Comparison of Phylogeny, Venom Composition and Neutralization by Antivenom in Diverse Species of Bothrops Complex

    PubMed Central

    Peixoto, Pedro S.; Bernardoni, Juliana L.; Oliveira, Sâmella S.; Portes-Junior, José Antonio; Mourão, Rosa Helena V.; Lima-dos-Santos, Isa; Sano-Martins, Ida S.; Chalkidis, Hipócrates M.; Valente, Richard H.; Moura-da-Silva, Ana M.

    2013-01-01

    In Latin America, Bothrops snakes account for most snake bites in humans, and the recommended treatment is administration of multispecific Bothrops antivenom (SAB – soro antibotrópico). However, Bothrops snakes are very diverse with regard to their venom composition, which raises the issue of which venoms should be used as immunizing antigens for the production of pan-specific Bothrops antivenoms. In this study, we simultaneously compared the composition and reactivity with SAB of venoms collected from six species of snakes, distributed in pairs from three distinct phylogenetic clades: Bothrops, Bothropoides and Rhinocerophis. We also evaluated the neutralization of Bothrops atrox venom, which is the species responsible for most snake bites in the Amazon region, but not included in the immunization antigen mixture used to produce SAB. Using mass spectrometric and chromatographic approaches, we observed a lack of similarity in protein composition between the venoms from closely related snakes and a high similarity between the venoms of phylogenetically more distant snakes, suggesting little connection between taxonomic position and venom composition. P-III snake venom metalloproteinases (SVMPs) are the most antigenic toxins in the venoms of snakes from the Bothrops complex, whereas class P-I SVMPs, snake venom serine proteinases and phospholipases A2 reacted with antibodies in lower levels. Low molecular size toxins, such as disintegrins and bradykinin-potentiating peptides, were poorly antigenic. Toxins from the same protein family showed antigenic cross-reactivity among venoms from different species; SAB was efficient in neutralizing the B. atrox venom major toxins. Thus, we suggest that it is possible to obtain pan-specific effective antivenoms for Bothrops envenomations through immunization with venoms from only a few species of snakes, if these venoms contain protein classes that are representative of all species to which the antivenom is targeted. PMID

  12. Comparison of phylogeny, venom composition and neutralization by antivenom in diverse species of bothrops complex.

    PubMed

    Sousa, Leijiane F; Nicolau, Carolina A; Peixoto, Pedro S; Bernardoni, Juliana L; Oliveira, Sâmella S; Portes-Junior, José Antonio; Mourão, Rosa Helena V; Lima-dos-Santos, Isa; Sano-Martins, Ida S; Chalkidis, Hipócrates M; Valente, Richard H; Moura-da-Silva, Ana M

    2013-01-01

    In Latin America, Bothrops snakes account for most snake bites in humans, and the recommended treatment is administration of multispecific Bothrops antivenom (SAB--soro antibotrópico). However, Bothrops snakes are very diverse with regard to their venom composition, which raises the issue of which venoms should be used as immunizing antigens for the production of pan-specific Bothrops antivenoms. In this study, we simultaneously compared the composition and reactivity with SAB of venoms collected from six species of snakes, distributed in pairs from three distinct phylogenetic clades: Bothrops, Bothropoides and Rhinocerophis. We also evaluated the neutralization of Bothrops atrox venom, which is the species responsible for most snake bites in the Amazon region, but not included in the immunization antigen mixture used to produce SAB. Using mass spectrometric and chromatographic approaches, we observed a lack of similarity in protein composition between the venoms from closely related snakes and a high similarity between the venoms of phylogenetically more distant snakes, suggesting little connection between taxonomic position and venom composition. P-III snake venom metalloproteinases (SVMPs) are the most antigenic toxins in the venoms of snakes from the Bothrops complex, whereas class P-I SVMPs, snake venom serine proteinases and phospholipases A2 reacted with antibodies in lower levels. Low molecular size toxins, such as disintegrins and bradykinin-potentiating peptides, were poorly antigenic. Toxins from the same protein family showed antigenic cross-reactivity among venoms from different species; SAB was efficient in neutralizing the B. atrox venom major toxins. Thus, we suggest that it is possible to obtain pan-specific effective antivenoms for Bothrops envenomations through immunization with venoms from only a few species of snakes, if these venoms contain protein classes that are representative of all species to which the antivenom is targeted.

  13. Degradation in the dentin-composite interface subjected to multi-species biofilm challenges.

    PubMed

    Li, Y; Carrera, C; Chen, R; Li, J; Lenton, P; Rudney, J D; Jones, R S; Aparicio, C; Fok, A

    2014-01-01

    Oral biofilms can degrade the components in dental resin-based composite restorations, thus compromising marginal integrity and leading to secondary caries. This study investigates the mechanical integrity of the dentin-composite interface challenged with multi-species oral biofilms. While most studies used single-species biofilms, the present study used a more realistic, diverse biofilm model produced directly from plaques collected from donors with a history of early childhood caries. Dentin-composite disks were made using bovine incisor roots filled with Z100(TM) or Filtek(TM) LS (3M ESPE). The disks were incubated for 72 h in paired CDC biofilm reactors, using a previously published protocol. One reactor was pulsed with sucrose, and the other was not. A sterile saliva-only control group was run with sucrose pulsing. The disks were fractured under diametral compression to evaluate their interfacial bond strength. The surface deformation of the disks was mapped using digital image correlation to ascertain the fracture origin. Fracture surfaces were examined using scanning electron microscopy/energy-dispersive X-ray spectroscopy to assess demineralization and interfacial degradation. Dentin demineralization was greater under sucrose-pulsed biofilms, as the pH dropped <5.5 during pulsing, with LS and Z100 specimens suffering similar degrees of surface mineral loss. Biofilm growth with sucrose pulsing also caused preferential degradation of the composite-dentin interface, depending on the composite/adhesive system used. Specifically, Z100 specimens showed greater bond strength reduction and more frequent cohesive failure in the adhesive layer. This was attributed to the inferior dentin coverage by Z100 adhesive, which possibly led to a higher level of chemical and enzymatic degradation. The results suggested that factors other than dentin demineralization were also responsible for interfacial degradation. A clinically relevant in vitro biofilm model was therefore

  14. Ecological Significance of a Geomorphic Stream Classification: Species and Functional Group Composition of Riparian Plant Communities

    NASA Astrophysics Data System (ADS)

    Shaw, J. R.; Cooper, D. J.

    2014-12-01

    We tested the ecological significance of a geomorphic classification of Sonoran Desert ephemeral stream channels based on channel plan-form, degree of lateral confinement, and boundary material composition. This typology has been shown to discriminate among channel geometry and hydraulic characteristics for bedrock, bedrock with alluvium, incised alluvium, braided, and piedmont headwater channels. We examined stream reach-scale relationships of geomorphic stream types to the relative cover and density of perennial plant species and functional groups, and identified the dominant fluvial drivers, within riparian communities at 101 ephemeral stream reaches on the U.S. Army Yuma Proving Ground and Barry M. Goldwater Air Force Range in southwestern Arizona, USA. Nonparametric multivariate analysis of variance showed that species and functional group composition differed significantly among geomorphic stream types, both in terms of relative cover and density. Partitioning of among-site multivariate dissimilarity revealed that species compositional differences between stream types were caused largely by variation in the cover and density of the most common members of the regional flora. Distinctive functional group composition among reach types resulted from differences in the cover and density of drought-deciduous shrubs and subshrubs, evergreen trees and shrubs, and photosynthetic-stemmed trees. Comparison of environmental and biotic dissimilarity matrices highlighted the role of channel gradient as the dominant abiotic driver of riparian plant community composition, with stream channel elevation and width:depth providing additional explanatory power. Distinctive riparian plant community composition among the geomorphic stream types demonstrates the ecological significance of this a priori channel classification, and indicates its potential utility in understanding spatial patterns of ecological dynamics, sample stratification for process-based studies, and reference

  15. Degradation in the Dentin-Composite Interface Subjected to Multi-Species Biofilm Challenges

    PubMed Central

    Li, Yuping; Carrera, Carola; Chen, Ruoqiong; Li, Jianying; Patricia, Lenton; Rudney, Joel. D.; Jones, Robert S.; Aparicio, Conrado; Fok, Alex

    2013-01-01

    Oral biofilms can degrade the components in dental resin-based composite restorations, thus compromising marginal integrity and leading to secondary caries. In this study, we investigated the mechanical integrity of the dentin-composite interface challenged with multi-species oral biofilms. While most studies used single-species biofilms, we used a more realistic, diverse biofilm model produced directly from plaques collected from donors with a history of early childhood caries. Dentin–composite disks were made using bovine incisor roots filled with Z100™ or Filtek™ LS (3M ESPE). The disks were incubated for 72hr in paired CDC biofilm reactors, using a previously published protocol. One reactor was pulsed with sucrose, and the other was not. A sterile saliva-only control group was run with sucrose pulsing. The disks were fractured under diametral compression to evaluate their interfacial bond strength. Surface deformation of the disks was mapped using digital image correlation (DIC) to ascertain fracture origin. Fracture surfaces were examined using SEM/EDS to assess demineralization and interfacial degradation. Dentin demineralization was greater under sucrose-pulsed biofilms, as the pH dropped below 5.5 during pulsing, with LS and Z100 specimens suffering similar degrees of surface mineral loss. Biofilm growth with sucrose pulsing also caused preferential degradation of the composite-dentin interface, depending on the composite/adhesive system used. Specifically, Z100 specimens showed greater bond strength reduction and more frequent cohesive failure in the adhesive layer. This was attributed to the inferior dentin coverage by Z100 adhesive which possibly led to a higher level of chemical and enzymatic degradation. The results suggested that factors other than dentin demineralization were also responsible for interfacial degradation. We have thus developed a clinically relevant in vitro biofilm model which would allow us to effectively assess the

  16. Tailoring of ion species composition in complex plasmas with charge exchange collisions

    NASA Astrophysics Data System (ADS)

    Ostrikov, K.

    2005-06-01

    A generic approach towards tailoring of ion species composition in reactive plasmas used for nanofabrication of various functional nanofilms and nanoassemblies, based on a simplified model of a parallel-plate rf discharge, is proposed. The model includes an idealized reactive plasma containing two neutral and two ionic species interacting via charge exchange collisions in the presence of a microdispersed solid component. It is shown that the number densities of the desired ionic species can be efficiently managed by adjusting the dilution of the working gas in a buffer gas, rates of electron impact ionization, losses of plasma species on the discharge walls, and surfaces of fine particles, charge exchange rates, and efficiency of three-body recombination processes in the plasma bulk. The results are relevant to the plasma-aided nanomanufacturing of ordered patterns of carbon nanotip and nanopyramid microemitters.

  17. Impact of Microalgae-Bacteria Interactions on the Production of Algal Biomass and Associated Compounds

    PubMed Central

    Fuentes, Juan Luis; Garbayo, Inés; Cuaresma, María; Montero, Zaida; González-del-Valle, Manuel; Vílchez, Carlos

    2016-01-01

    A greater insight on the control of the interactions between microalgae and other microorganisms, particularly bacteria, should be useful for enhancing the efficiency of microalgal biomass production and associated valuable compounds. Little attention has been paid to the controlled utilization of microalgae-bacteria consortia. However, the studies of microalgal-bacterial interactions have revealed a significant impact of the mutualistic or parasitic relationships on algal growth. The algal growth, for instance, has been shown to be enhanced by growth promoting factors produced by bacteria, such as indole-3-acetic acid. Vitamin B12 produced by bacteria in algal cultures and bacterial siderophores are also known to be involved in promoting faster microalgal growth. More interestingly, enhancement in the intracellular levels of carbohydrates, lipids and pigments of microalgae coupled with algal growth stimulation has also been reported. In this sense, massive algal production might occur in the presence of bacteria, and microalgae-bacteria interactions can be beneficial to the massive production of microalgae and algal products. This manuscript reviews the recent knowledge on the impact of the microalgae-bacteria interactions on the production of microalgae and accumulation of valuable compounds, with an emphasis on algal species having application in aquaculture. PMID:27213407

  18. Impact of Microalgae-Bacteria Interactions on the Production of Algal Biomass and Associated Compounds.

    PubMed

    Fuentes, Juan Luis; Garbayo, Inés; Cuaresma, María; Montero, Zaida; González-Del-Valle, Manuel; Vílchez, Carlos

    2016-05-19

    A greater insight on the control of the interactions between microalgae and other microorganisms, particularly bacteria, should be useful for enhancing the efficiency of microalgal biomass production and associated valuable compounds. Little attention has been paid to the controlled utilization of microalgae-bacteria consortia. However, the studies of microalgal-bacterial interactions have revealed a significant impact of the mutualistic or parasitic relationships on algal growth. The algal growth, for instance, has been shown to be enhanced by growth promoting factors produced by bacteria, such as indole-3-acetic acid. Vitamin B12 produced by bacteria in algal cultures and bacterial siderophores are also known to be involved in promoting faster microalgal growth. More interestingly, enhancement in the intracellular levels of carbohydrates, lipids and pigments of microalgae coupled with algal growth stimulation has also been reported. In this sense, massive algal production might occur in the presence of bacteria, and microalgae-bacteria interactions can be beneficial to the massive production of microalgae and algal products. This manuscript reviews the recent knowledge on the impact of the microalgae-bacteria interactions on the production of microalgae and accumulation of valuable compounds, with an emphasis on algal species having application in aquaculture.

  19. Comparison of toxicity to terrestrial plants with algal growth inhibition by herbicides

    SciTech Connect

    Garten, C.T. Jr.; Frank, M.L.

    1984-10-01

    The toxicities of 21 different herbicides to algae (Selenastrum capricornutum and Chlorella vulgaris) and to terrestrial plants (radishes, barley, and bush beans or soybeans) were compared to order to determine the feasibility of using a short-term (96-h) algal growth inhibition test for identifying chemicals having potential toxicity in a 4-week terrestrial plant bioassay. The toxicity of each test chemical, usually in combination with a commercial formulation, was evaluated at six nominal concentrations, between 0 and 100 mg/L growth medium in the algal bioassay or between 0 and 100 mg/kg substate in the terrestrial plant bioassay, in terms of both (1) the no-observed-effect concentration (NOEC), i.e., the highest concentration tested at which no significant (P < 0.05, one-sided test) reduction in algal growth rate or in terrestrial plant yield, relative to controls, was observed; and (2) the concentration at which algal growth rate or terrestrial plant yield was reduced by 50% or more relative to controls. There was generally poor agreement between results from the two types of bioassays; results from algal growth inhibition tests were not significantly correlated with results from the terrestrial plant bioassays. Overall, there was an approximately 50% chance of an algal bioassay, using Selenastrum capricornutum, successfully screening (detecting) herbicide levels that reduced terrestrial plant yield. The results indicated that algal growth inhibition tests cannot be used generically to predict phytotoxicity of herbicides to terrestrial plant species. 7 references, 14 tables.

  20. Evolutionary Divergences in Root Exudate Composition among Ecologically-Contrasting Helianthus Species.

    PubMed

    Bowsher, Alan W; Ali, Rifhat; Harding, Scott A; Tsai, Chung-Jui; Donovan, Lisa A

    2016-01-01

    Plant roots exude numerous metabolites into the soil that influence nutrient availability. Although root exudate composition is hypothesized to be under selection in low fertility soils, few studies have tested this hypothesis in a phylogenetic framework. In this study, we examined root exudates of three pairs of Helianthus species chosen as phylogenetically-independent contrasts with respect to native soil nutrient availability. Under controlled environmental conditions, seedlings were grown to the three-leaf-pair stage, then transferred to either high or low nutrient treatments. After five days of nutrient treatments, we used gas chromatography-mass spectrometry for analysis of root exudates, and detected 37 metabolites across species. When compared in the high nutrient treatment, species native to low nutrient soils exhibited overall higher exudation than their sister species native to high nutrient soils in all three species pairs, providing support for repeated evolutionary shifts in response to native soil fertility. Species native to low nutrient soils and those native to high nutrient soils responded similarly to low nutrient treatments with increased exudation of organic acids (fumaric, citric, malic acids) and glucose, potentially as a mechanism to enhance nutrition acquisition. However, species native to low nutrient soils also responded to low nutrient treatments with a larger decrease in exudation of amino acids than species native to high nutrient soils in all three species pairs. This indicates that species native to low nutrient soils have evolved a unique sensitivity to changes in nutrient availability for some, but not all, root exudates. Overall, these repeated evolutionary divergences between species native to low nutrient soils and those native to high nutrient soils provide evidence for the adaptive value of root exudation, and its plasticity, in contrasting soil environments.

  1. Evolutionary Divergences in Root Exudate Composition among Ecologically-Contrasting Helianthus Species

    PubMed Central

    Bowsher, Alan W.; Ali, Rifhat; Harding, Scott A.; Tsai, Chung-Jui; Donovan, Lisa A.

    2016-01-01

    Plant roots exude numerous metabolites into the soil that influence nutrient availability. Although root exudate composition is hypothesized to be under selection in low fertility soils, few studies have tested this hypothesis in a phylogenetic framework. In this study, we examined root exudates of three pairs of Helianthus species chosen as phylogenetically-independent contrasts with respect to native soil nutrient availability. Under controlled environmental conditions, seedlings were grown to the three-leaf-pair stage, then transferred to either high or low nutrient treatments. After five days of nutrient treatments, we used gas chromatography-mass spectrometry for analysis of root exudates, and detected 37 metabolites across species. When compared in the high nutrient treatment, species native to low nutrient soils exhibited overall higher exudation than their sister species native to high nutrient soils in all three species pairs, providing support for repeated evolutionary shifts in response to native soil fertility. Species native to low nutrient soils and those native to high nutrient soils responded similarly to low nutrient treatments with increased exudation of organic acids (fumaric, citric, malic acids) and glucose, potentially as a mechanism to enhance nutrition acquisition. However, species native to low nutrient soils also responded to low nutrient treatments with a larger decrease in exudation of amino acids than species native to high nutrient soils in all three species pairs. This indicates that species native to low nutrient soils have evolved a unique sensitivity to changes in nutrient availability for some, but not all, root exudates. Overall, these repeated evolutionary divergences between species native to low nutrient soils and those native to high nutrient soils provide evidence for the adaptive value of root exudation, and its plasticity, in contrasting soil environments. PMID:26824236

  2. Methods for removing contaminants from algal oil

    SciTech Connect

    Lupton, Francis Stephen

    2016-09-27

    Methods for removing contaminants from algal oil are provided. In an embodiment, a method comprises the steps of combining a sulfuric acid-aqueous solution that has a pH of about 1 or less with a contaminant-containing algal oil at treatment conditions effective to form an effluent. The effluent comprises a treated algal oil phase and contaminants in an acidic aqueous phase. The contaminants comprise metals, phosphorus, or combinations thereof. The acidic aqueous phase is removed from the effluent to form a contaminant-depleted algal oil.

  3. Fatty acid composition of seeds of some species of Nepeta L.

    PubMed

    Kiliç, Turgut; Dirmenci, Tuncay; Gören, Ahmet C

    2007-05-01

    The fatty acid compositions of Nepeta viscida, N. cilicica, N. crinita, N. nuda ssp. glandulifera and N. aristata were analyzed by GC/MS. The main free fatty acids were found as linolenic acid (49.8-58.5%), linoleic acid (10.9-23.5%), oleic acid (11.5-19.2%), palmitic acid (5.2-6.8%) and stearic acid (2.0-3.7%) and, total fatty acid compositions of species were analyzed and results were found as 36.2-49.8%, 17.1-25.8%, 15.4-25.8%, 6.4-7.8%, and 2.7-4.1%, respectively.

  4. [Species composition and biochemical properties of yeasts from the water of the Bratsk reservoir].

    PubMed

    Zemskaia, T I; Novozhilova, M I

    1980-01-01

    The specific composition of 370 yeast strains isolated from the water of the Bratsk Reservoir was studied. The strains were assigned to 7 genera and 16 species according to their morphological, cultural, and physiologo-biochemical properties. Asporogenous forms prevailed; 52 strains possessed the amylolytic activity. The proteolytic activity was found in the cultures very seldom. The capability to assimilate organic phosphorus compounds was detected in 8% of the strains, and the ability to use inorganic phosphorus compounds was registered in 38% of the strains. Up to 95% of the strains utilized oil; 88%--engine oil; 43%--phenol. The specific yeast composition varied depending on the biotype.

  5. Species composition of skates (Rajidae) in commercial fisheries around the British Isles and their discarding patterns.

    PubMed

    Silva, J F; Ellis, J R; Catchpole, T L

    2012-04-01

    Recent regulations have required European nations to report commercial landings of Rajidae (skates) to species level since 2008. Morphological similarities between some species, variability in colouration and regional differences in common names may compromise the accuracy of some of these data. An increased proportion of rajid landings reported by the U.K. (England, Wales and Northern Ireland) are now reported to species level (42% in 2008, rising to 92% in 2010). Recent landings (2007-2010) of Rajidae by the U.K. indicated that the majority of reported landings were made by otter trawl (55·9%), tangle and gillnet (18·7%) and beam trawl (15·5%). Approximately 70% of recent landings originated from four ICES Divisions: the Irish Sea (VIIa), western English Channel (VIIe), Bristol Channel (VIIf) and southern North Sea (IVc). Recent species-specific landings of Rajidae are appraised in terms of the species reported and the overall composition, and potential problems identified. Data from observer trips have been used to estimate the species composition of Rajidae taken in some of the main commercial fisheries operating around the British Isles, and these data are compared to landings. Although there was typically broad agreement between these data sets in terms of the main species landed, misidentification issues were apparent and Rajidae with highly patchy distributions may be under-represented in observer data. Data from observer trips were also used to examine the discard and retention pattern. Most rajid species were first retained from total lengths, L(T) , of 27-34 cm, with 50% retention occurring at between 49 and 51 cm and near-full retention at L(T) of 60-67 cm. Beam trawls captured a higher proportion of smaller individuals, whilst gillnets (>150 mm mesh size) caught proportionally more larger rajids.

  6. Changes in plant species composition of coastal dune habitats over a 20-year period.

    PubMed

    Del Vecchio, Silvia; Prisco, Irene; Acosta, Alicia T R; Stanisci, Angela

    2015-03-05

    Coastal sandy ecosystems are increasingly being threatened by human pressure, causing loss of biodiversity, habitat degradation and landscape modifications. However, there are still very few detailed studies focussing on compositional changes in coastal dune plant communities over time. In this work, we investigated how coastal dune European Union (EU) habitats (from pioneer annual beach communities to Mediterranean scrubs on the landward fixed dunes) have changed during the last 20 years. Using phytosociological relevés conducted in 1989-90 and in 2010-12, we investigated changes in floristic composition over time. We then compared plant cover and the proportion of ruderal, alien and habitat diagnostic species ('focal species') in the two periods. Finally, we used Ellenberg indicator values to define the 'preferences' of the plant species for temperature and moisture. We found that only fore dune habitats showed significant differences in species cover between the two time periods, with higher plant cover in the more recent relevés and a significant increase in thermophilic species. Although previous studies have demonstrated consistent habitat loss in this area, we observed that all coastal dune plant communities remain well represented, after a 20-year period. However, fore dunes have been experiencing significant compositional changes. Although we cannot confirm whether the observed changes are strictly related to climatic changes, to human pressure or to both, we hypothesize that a moderate increment in average yearly temperature may have promoted the increase in plant cover and the spread of thermophilic species. Thus, even though human activities are major driving forces of change in coastal dune vegetation, at the community scale climatic factors may also play important roles. Our study draws on re-visitation studies which appear to constitute a powerful tool for the assessment of the conservation status of EU habitats.

  7. Frog species richness, composition and beta-diversity in coastal Brazilian restinga habitats.

    PubMed

    Rocha, C F D; Hatano, F H; Vrcibradic, D; Van Sluys, M

    2008-02-01

    We studied the species richness and composition of frogs in 10 restinga habitats (sand dune environments dominated by herbaceous and shrubby vegetation) along approximately 1500 km of coastal areas of three Brazilian States: Rio de Janeiro (Grumari, Maricá, Massambaba, Jurubatiba and Grussaí), Espírito Santo (Praia das Neves and Setiba) and Bahia (Prado and Trancoso). We estimated beta-diversity and similarity among areas and related these parameters to geographic distance between areas. All areas were surveyed with a similar sampling procedure. We found 28 frog species belonging to the families Hylidae, Microhylidae, Leptodactylidae and Bufonidae. Frogs in restingas were in general nocturnal with no strictly diurnal species. The richest restinga was Praia das Neves (13 species), followed by Grussaí and Trancoso (eight species in each). The commonest species in the restingas was Scinax alter (found in eight restingas), followed by Aparasphenodon brunoi (seven areas). Our data shows that richness and composition of frog communities vary consistently along the eastern Brazilian coast and, in part, the rate of species turnover is affected by the distance among areas. Geographic distance explained approximately 12% of species turnover in restingas and about 9.5% of similarity among frog assemblages. Although geographic distance somewhat affects frog assemblages, other factors (e.g. historical factors, disturbances) seem to be also involved in explaining present frog assemblage composition in each area and species turnover among areas. The frog fauna along restinga habitats was significantly nested (matrix community temperature = 26.13 degrees; p = 0.007). Our data also showed that the most hospitable restinga was Praia das Neves and indicated that this area should be protected as a conservation unit. Frog assemblage of each area seems to partially represent a nested subset of the original assemblage, although we should not ignore the importance of historical

  8. Tree species composition, diversity and biomass of Bukit Panchor State Park, Pulau Pinang, Malaysia

    NASA Astrophysics Data System (ADS)

    Norazlinda, M.; Nizam, M. S.; Latiff, A.; Fitri, Z. Ahmad; Sani, M.

    2016-11-01

    A study on species composition, diversity and biomass of tree communities at Bukit Panchor State Park, Pulau Pinang, Malaysia was conducted. A total of 20 ecological plots of 25 m × 20 m that covered a total area of 1.0 ha were established. All trees with diameter at breast height (dbh) of 5.0 cm and above were tagged, measured and collected for voucher specimens. The floristic composition of Bukit Panchor State Park consists of 1,039 individuals represented by 46 families, 124 genera and 224 species. The most abundant family recorded was Euphorbiaceae with 144 individuals belonging to 26 species. Shorea leprosula (Dipterocarpaceae) was the most important species according to IVi calculated at IVi = 8.7%. Dipterocarpaceae (IVi = 15.5%) was also the most important family at family level. The Bukit Panchor State Park demonstrated high species diversity at H'=4.69 (H'max=5.41) and Evenness of E=0.87. Total tree biomass estimated was at 686.9 t/ha.

  9. Contributions of Dryland Forest (Caatinga) to Species Composition, Richness and Diversity of Drosophilidae.

    PubMed

    Oliveira, G F; Rohde, C; Garcia, A C L; Montes, M A; Valente, V L S

    2016-10-01

    In this study, semi-arid environments were tested to see if they support insect diversity. This was evaluated through the structure of the composition of assemblies of drosophilids in three conservation units placed in three different ecoregions in the dryland forests, Caatinga. This is a unique biome in northeast Brazil, comprising approximately 10% of the country. Species richness was investigated over 2 years during a prolonged drought, considered the worst affliction the Caatinga ecosystem had experienced in the last 50 years. Alpha diversity indices and the ecological similarity between the samples were calculated to determine how the environments drive the composition of Drosophilidae in such semi-arid places. A total of 7352 specimens were sampled. They were classified into 20 species belonging to four genera: Drosophila, Rhinoleucophenga, Scaptodrosophila, and Zaprionus. Drosophila nebulosa Sturtevant (44.5%) and Drosophila cardini Sturtevant (12.5%) were the most abundant species. The occurrences and abundances of all the species differed greatly between sites. These results and other ecological analyses indicate that although placed in the same biome, there are great variability in the drosophilid species and abundance among the three protected and conserved dryland environments.

  10. Variation in Eimeria oocyst count and species composition in weanling beef heifers.

    PubMed

    Lucas, A S; Swecker, W S; Scaglia, G; Lindsay, D S; Zajac, A M

    2006-10-01

    Rectal fecal samples were collected daily on 10 consecutive days in November 2004 from 11 weaned beef heifers to assess daily variation in fecal oocyst count and species composition. Subsequent samples were collected from the same animals on 15 April 2005 and 9 June 2005. Oocyst numbers were determined by the modified McMaster's test, and species were identified by examination of oocysts recovered with the Wisconsin sugar flotation technique. Soil samples were collected from the heifer pasture on 8 June 2005, and oocysts were quantified and identified to species. Mean fecal oocyst counts varied little at all sampling dates ranging from 134-377 oocysts/g. Ten Eimeria spp. were identified in fecal samples collected in November and April and 11 in June. Eimeria bovis was the most common species identified at all samplings. Mean species composition showed little variation during the 10-day sampling period in November, remained similar in April, and varied slightly in June. Twelve Eimeria spp. were identified in soil samples in proportions similar to those seen in fecal samples. The results indicate that clinically normal weanling beef heifers are likely to be infected with a diverse, but relatively stable, community of Eimeria spp.

  11. Assessing spider species richness and composition in Mediterranean cork oak forests

    NASA Astrophysics Data System (ADS)

    Cardoso, Pedro; Gaspar, Clara; Pereira, Luis C.; Silva, Israel; Henriques, Sérgio S.; da Silva, Ricardo R.; Sousa, Pedro

    2008-01-01

    Semi-quantitative sampling protocols have been proposed as the most cost-effective and comprehensive way of sampling spiders in many regions of the world. In the present study, a balanced sampling design with the same number of samples per day, time of day, collector and method, was used to assess the species richness and composition of a Quercus suber woodland in Central Portugal. A total of 475 samples, each corresponding to one hour of effective fieldwork, were taken. One hundred sixty eight species were captured, of which 150 were recorded inside a delimited one-hectare plot; this number corresponds to around 90% of the estimated species richness. We tested the effect of applying different sampling approaches (sampling day, time of day, collector experience and method) on species richness, abundance, and composition. Most sampling approaches were found to influence the species measures, of which method, time of day and the respective interaction had the strongest influence. The data indicated that fauna depletion of the sampled area possibly occurred and that the inventory was reaching a plateau by the end of the sampling process. We advocate the use of the Chao estimators as best for intensive protocols limited in space and time and the use of the asymptotic properties of the Michaelis-Menten curve as a stopping or reliability rule, as it allows the investigator to know when a close-to-complete inventory has been obtained and when reliable non-parametric estimators have been achieved.

  12. Plankton studies in San Francisco Bay; II, Phytoplankton abundance and species composition, July 1977-December 1979

    USGS Publications Warehouse

    Wong, Raymond L. J.; Cloern, James E.

    1981-01-01

    Data are presented on the phytoplankton species composition and abundance in San Francisco Bay from July 1977 through December 1979. Phytoplankton identification and enumerations were made at selected stations. Sample collections were made at selected stations in the main channel of the Bay from Rio Vista on the Sacramento River to Calaveras Point in South San Francisco Bay, and at shoal stations in the central portion of South San Francisco Bay, San Pablo Bay, and Suisun Bay. Also reported, from October 1978 through December 1979, are the calculated phytoplankton carbon and percent nondiatom carbon, and the species list. This study is one component of an ongoing interdisciplinary study of San Francisco Bay. (USGS)

  13. [Species composition of anaerobic microflora in parodontal pocket depending upon disease stage].

    PubMed

    Zyrianova, N V; Grigor'ian, A S; Grudianov, A I; Frolova, O A; Shil'nikova, I I; Kobozev, M I

    2009-01-01

    With the help of polymerase chain reaction (PCR) the dynamic of species composition of anaerobic microflora in cases of generalized parodontitis was established. It was detected that disease severity increase was followed by the increase of the number of anaerobic microflora species in parodontal pocket; at that it was impossible to connect the presence of some determined type of microorganism with the inflammatory parodontal process intensity. It was shown that proteins fimbrilin and gingipain were not the only parodontitis pathogenic factors although the first one (fimbrilin) could be connected with aggressive disease flow. The suggested PCR scheme could be useful for early disease stage diagnostic and substantiation of antimicrobial therapy method selection.

  14. Raman microspectroscopy of individual algal cells: sensing unsaturation of storage lipids in vivo.

    PubMed

    Samek, Ota; Jonáš, Alexandr; Pilát, Zdeněk; Zemánek, Pavel; Nedbal, Ladislav; Tříska, Jan; Kotas, Petr; Trtílek, Martin

    2010-01-01

    Algae are becoming a strategic source of fuels, food, feedstocks, and biologically active compounds. This potential has stimulated the development of innovative analytical methods focused on these microorganisms. Algal lipids are among the most promising potential products for fuels as well as for nutrition. The crucial parameter characterizing the algal lipids is the degree of unsaturation of the constituent fatty acids quantified by the iodine value. Here we demonstrate the capacity of the spatially resolved Raman microspectroscopy to determine the effective iodine value in lipid storage bodies of individual living algal cells. The Raman spectra were collected from three selected algal species immobilized in an agarose gel. Prior to immobilization, the algae were cultivated in the stationary phase inducing an overproduction of lipids. We employed the characteristic peaks in the Raman scattering spectra at 1,656 cm(-1) (cis C═C stretching mode) and 1,445 cm(-1) (CH(2) scissoring mode) as the markers defining the ratio of unsaturated-to-saturated carbon-carbon bonds of the fatty acids in the algal lipids. These spectral features were first quantified for pure fatty acids of known iodine value. The resultant calibration curve was then used to calculate the effective iodine value of storage lipids in the living algal cells from their Raman spectra. We demonstrated that the iodine value differs significantly for the three studied algal species. Our spectroscopic estimations of the iodine value were validated using GC-MS measurements and an excellent agreement was found for the Trachydiscus minutus species. A good agreement was also found with the earlier published data on Botryococcus braunii. Thus, we propose that Raman microspectroscopy can become technique of choice in the rapidly expanding field of algal biotechnology.

  15. Non-conventional approaches to food processing in CELSS, 1. Algal proteins: Characterization and process optimization

    NASA Technical Reports Server (NTRS)

    Nakhost, Z.; Karel, M.; Krukonis, V. J.

    1987-01-01

    Protein isolate obtained from green algae cultivated under controlled conditions was characterized. Molecular weight determination of fractionated algal proteins using SDS-polyacrylamide gel electrophoresis revealed a wide spectrum of molecular weights ranging from 15,000 to 220,000. Isoelectric points of dissociated proteins were in the range of 3.95 to 6.20. Amino acid composition of protein isolate compared favorably with FAO standards. High content of essential amino acids leucine, valine, phenylalanine and lysine make algal protein isolate a high quality component of closed ecological life support system diets. To optimize the removal of algal lipids and pigments supercritical carbon dioxide extraction (with and without ethanol as a co-solvent) was used. Addition of ethanol to supercritical carbon dioxide resulted in more efficient removal of algal lipids and produced protein isolate with a good yield and protein recovery. The protein isolate extracted by the above mixture had an improved water solubility.

  16. Non-conventional approaches to food processing in CELSS. I - Algal proteins: Characterization and process optimization

    NASA Technical Reports Server (NTRS)

    Nakhost, Z.; Karel, M.; Krukonis, V. J.

    1987-01-01

    Protein isolate obtained from green algae (Scenedesmus obliquus) cultivated under controlled conditions was characterized. Molecular weight determination of fractionated algal proteins using SDS-polyacrylamide gel electrophoresis revealed a wide spectrum of molecular weights ranging from 15,000 to 220,000. Isoelectric points of dissociated proteins were in the range of 3.95 to 6.20. Amino acid composition of protein isolate compared favorably with FAO standards. High content of essential amino acids leucine, valine, phenylalanine and lysine makes algal protein isolate a high quality component of CELSS diets. To optimize the removal of algal lipids and pigments supercritical carbon dioxide extraction (with and without ethanol as a co-solvent) was used. Addition of ethanol to supercritical CO2 resulted in more efficient removal of algal lipids and produced protein isolate with a good yield and protein recovery. The protein isolate extracted by the above mixture had an improved water solubility.

  17. Translocation of microbenthic algal assemblages used for In situ analysis of metal pollution in rivers

    PubMed

    Ivorra; Hettelaar; Tubbing; Kraak; Sabater; Admiraal

    1999-07-01

    Effects of metal pollution from a zinc factory on microbenthic algal communities were assessed in three neighboring streams on the Dutch-Belgian border. Diatom species composition was experimentally related to water quality by transferring racks with colonized glass discs from a polluted stream to a reference stream and vice versa. The succession of species and the changes in biomass and metal accumulation were measured during experiments in spring, autumn, and winter. Metal concentrations and dry weight in translocated biofilms tended to conform with those in local biofilms within an incubation time of 14 to 18 days. Bray-Curtis similarity values from the different communities indicated that diatom communities responded more completely to the metal-polluted conditions than to the reference water quality. Cymbella minuta, Diatoma vulgare var. ehrenbergii, Navicula sp., and Melosira varians had a lower percentage in assemblages placed in the metal-polluted streams. In contrast, Pinnularia sp. and Neidium ampliatum decreased in assemblages from the polluted streams that were transferred to the reference stream. Achnanthes minutissima and Navicula seminulum (N. atomus) proliferated on any translocation, possibly reflecting an opportunistic strategy and a high tolerance for Zn and Cd. The behavior of the species in relation to metal pollution generally accorded with observations in the literature. However, it seems that metal tolerance is not the only selective factor, and other ecological variables may also influence the composition of microphytobenthic communities.http://link.springer-ny. com/link/service/journals/00244/bibs/37n1p19.html

  18. Changes in composition, cellulose degradability and biochemical methane potential of Miscanthus species during the growing season.

    PubMed

    Peng, Xiaowei; Li, Chao; Liu, Jing; Yi, Zili; Han, Yejun

    2017-03-24

    The composition, cellulose degradability and biochemical methane potential (BMP) of M. sinensis, M. floridulus, Miscanthus×giganteus and M. lutarioriparius were investigated concomitantly at different growth/harvest times during their growing season. For all the four species, there was only a slight change in the compositional content. Meanwhile there was a huge change in the BMP values. At the growth time of 60days the BMPs ranged from 247.1 to 266.5mlg(-1)VS. As growth time was prolonged, the BMPs decreased by 11-35%. For each species, the BMP was positively correlated to the cellulose degradability with the correlation coefficients (R(2)) ranging from 0.8055 to 0.9925. This suggests that besides the biomass yield, it is justifiable to consider cellulose degradability when selecting the suitable harvest time for biofuels production from Miscanthus, especially in tropical and subtropical regions where Miscanthus can be harvested twice or more within a year.

  19. Walker Branch Throughfall Displacement Experiment Data Report: Site Characterization, System Performance, Weather, Species Composition, and Growth

    SciTech Connect

    Hanson, P.J.

    2001-09-04

    This numeric data package provides data sets, and accompanying documentation, on site characterization, system performance, weather, species composition, and growth for the Throughfall Displacement Experiment, which was established in the Walker Branch Watershed of East Tennessee to provide data on the responses of forests to altered precipitation regimes. The specific data sets include soil water content and potential, coarse fraction of the soil profile, litter layer temperature, soil temperature, monthly weather, daily weather, hourly weather, species composition of trees and saplings, mature tree and sapling annual growth, and relative leaf area index. Fortran and SAS{trademark} access codes are provided to read the ASCII data files. The data files and this documentation are available without charge on a variety of media and via the Internet from the Carbon Dioxide Information Analysis Center (CDIAC).

  20. Army ants in four forests: geographic variation in raid rates and species composition.

    PubMed

    O'Donnell, Sean; Lattke, John; Powell, Scott; Kaspari, Michael

    2007-05-01

    1. The New World army ants are top predators in the litter of tropical forest, but no comprehensive studies exist on variation in assemblage-wide activity and species composition. We used standardized protocols to estimate foraging raid rates and species composition of army ant communities in four Neotropical forests. The study sites spanned approximately 10 degrees latitude, with two sites each in Central and South America. 2. We recorded a total of 22 species of army ants. The four sites varied in observed and estimated species richness. Species overlap was highest between the Central American sites, and lowest between the South American sites. 3. Raid activity varied significantly among sites. Raid activity per kilometre of trail walks was over four times higher at the most active site (Sta. Maria, Venezuela) than at the least active site (Barro Colorado Island, Panama). Furthermore, each site showed a different diel pattern of activity. For example, raid activity was higher during daylight hours in Costa Rica, and higher at night in Venezuela. Raid activity relationships with ambient temperature also varied significantly among sites. 4. The overall rate of army ant raids passing through 1 m(2) plots was 0.73 raids per day, but varied among sites, from 0 raids per day (Panama) to 1.2 raids per day (Venezuela). 5. Primarily subterranean species were significantly more abundant in Venezuela, and above-ground foragers that form large swarm fronts were least abundant in Panama. The site heterogeneity in species abundance and diel activity patterns has implications for army ant symbionts, including ant-following birds, and for the animals hunted by these top predators.

  1. Chemical composition of the essential oil from Croton kimosorum, an endemic species to Madagascar.

    PubMed

    Rabehaja, Delphin J R; Ihandriharison, Harilala; Ramanoelina, Panja A R; Benja, Rakotonirina; Ratsimamanga-Urverg, Suzanne; Bighelli, Ange; Casanova, Joseph; Tomi, Félix

    2014-01-01

    Croton kimosorum Leandri is an endemic species to Madagascar. The chemical composition of aerial parts, leaf and stem oils is reported for the first time. Analysis was carried out by combination of chromatographic (CC, GC), spectroscopic and spectrometric (MS, 13C NMR) techniques. In total, 76 compounds have been identified. Essential oil isolated from aerial parts contained mainly linalool (21.6%), sabinene (10.4%), 1,8-cineole (6.3%), beta-pinene (6.2%), (E)-beta-caryophyllene (5.9%), terpinen-4-ol (4.8%), geraniol (4,5%) and germacrene D (2.3%). In comparison with the first sample, the composition of leaf and stem oils varied slightly, while essential oil isolated by vapor distillation from a semi-industrial still exhibited similar composition.

  2. Boron-bearing species in ceramic matrix composites for long-term aerospace applications

    NASA Astrophysics Data System (ADS)

    Naslain, R.; Guette, A.; Rebillat, F.; Pailler, R.; Langlais, F.; Bourrat, X.

    2004-02-01

    Boron-bearing refractory species are introduced in non-oxide ceramic matrix fibrous composites (such as SiC/SiC composites) to improve their oxidation resistance under load at high temperatures with a view to applications in the aerospace field. B-doped pyrocarbon and hex-BN have been successfully used as interphase (instead of pure pyrocarbon) either as homogeneous or multilayered fiber coatings, to arrest and deflect matrix cracks formed under load (mechanical fuse function) and to give toughness to the materials. A self-healing multilayered matrix is designed and used in a model composite, which combines B-doped pyrocarbon mechanical fuse layers and B- and Si-bearing compound (namely B 4C and SiC) layers forming B 2O 3-based fluid healing phases when exposed to an oxidizing atmosphere. All the materials are deposited by chemical vapor infiltration. Lifetimes under tensile loading of several hundreds hours at high temperatures are reported.

  3. Changes in plant species composition of coastal dune habitats over a 20-year period

    PubMed Central

    Del Vecchio, Silvia; Prisco, Irene; Acosta, Alicia T. R.; Stanisci, Angela

    2015-01-01

    Coastal sandy ecosystems are increasingly being threatened by human pressure, causing loss of biodiversity, habitat degradation and landscape modifications. However, there are still very few detailed studies focussing on compositional changes in coastal dune plant communities over time. In this work, we investigated how coastal dune European Union (EU) habitats (from pioneer annual beach communities to Mediterranean scrubs on the landward fixed dunes) have changed during the last 20 years. Using phytosociological relevés conducted in 1989–90 and in 2010–12, we investigated changes in floristic composition over time. We then compared plant cover and the proportion of ruderal, alien and habitat diagnostic species (‘focal species’) in the two periods. Finally, we used Ellenberg indicator values to define the ‘preferences’ of the plant species for temperature and moisture. We found that only fore dune habitats showed significant differences in species cover between the two time periods, with higher plant cover in the more recent relevés and a significant increase in thermophilic species. Although previous studies have demonstrated consistent habitat loss in this area, we observed that all coastal dune plant communities remain well represented, after a 20-year period. However, fore dunes have been experiencing significant compositional changes. Although we cannot confirm whether the observed changes are strictly related to climatic changes, to human pressure or to both, we hypothesize that a moderate increment in average yearly temperature may have promoted the increase in plant cover and the spread of thermophilic species. Thus, even though human activities are major driving forces of change in coastal dune vegetation, at the community scale climatic factors may also play important roles. Our study draws on re-visitation studies which appear to constitute a powerful tool for the assessment of the conservation status of EU habitats. PMID:25750408

  4. Grazing effects on species composition in different vegetation types (La Palma, Canary Islands)

    NASA Astrophysics Data System (ADS)

    Arévalo, J. R.; de Nascimento, L.; Fernández-Lugo, S.; Mata, J.; Bermejo, L.

    2011-05-01

    Grazing management is probably one of the most extensive land uses, but its effects on plant communities have in many cases been revealed to be contradictory. Some authors have related these contradictions to the stochastic character of grazing systems. Because of that, it is necessary to implement specific analyses of grazing effects on each community, especially in natural protected areas, in order to provide the best information to managers. We studied the effects of grazing on the species composition of the main vegetation types where it takes place (grasslands, shrublands and pine forests) on the island of La Palma, Canary Islands. We used the point-quadrat intersect method to study the species composition of grazed and ungrazed areas, which also were characterized by their altitude, distance to farms, distance to settlements, year of sampling, herbaceous aboveground biomass and soil organic matter. The variables organic matter, productivity and species richness were not significantly affected by grazing. The species composition of the analyzed plant communities was affected more by variables such as altitude or distance to farms than by extensive grazing that has been traditionally carried out on the island of La Palma involving certain practices such as continuous monitoring of animals by goat keepers, medium stocking rates adjusted to the availability of natural pastures, supplementation during the dry season using local forage shrubs or mown pastures and rotating animals within grazing areas Although some studies have shown a negative effect of grazing on endangered plant species, these results cannot be freely extrapolated to the traditional grazing systems that exert a low pressure on plant communities (as has been found in this study). We consider extensive grazing as a viable way of ensuring sustainable management of the studied ecosystems.

  5. Diet composition and resource partitioning in two small flatfish species in the German Bight

    NASA Astrophysics Data System (ADS)

    Schückel, S.; Sell, A.; Kröncke, I.; Reiss, H.

    2011-10-01

    Since the late 1980s, the small-sized non-commercial flatfish species solenette ( Buglossidium luteum) and scaldfish ( Arnoglossus laterna) have increased in abundance in the southern North Sea. Because these species are considered as possible competitors for prey of commercial flatfish, this study aimed at advancing knowledge of their feeding ecology. Between January 2009 and January 2010 stomach contents of solenette and scaldfish and benthic infauna were sampled seasonally in a study area in the German Bight. The objectives were to investigate the seasonal variability of feeding activity and diet composition of both flatfish species related to benthic prey availability. For both flatfish, the highest feeding activity was found in summer, at the same time that the highest prey densities occurred in the study area. A reduced feeding activity was observed during the winter of 2010, but not in the winter of 2009, probably related to higher 2009 water temperatures. In all seasons, diet composition of solenette was dominated by meiofauna, mainly harpacticoid copepods. Macrofauna prey species, namely juveniles of bivalves and echinoderms became important in spring. An increase in amphipods and cumaceans was found in the stomach contents during summer and autumn, simultaneously with their increased abundance in the benthic infauna. In contrast, polychaetes were rarely found in the diet, but dominated the infauna during all seasons. Diet composition of scaldfish was dominated by larger and mobile prey, and, during all seasons, was mainly comprised of crustaceans. Amphipods characterised the diet in both winters, while decapods such as Crangon spp. and Liocarcinus spp. were the dominant prey from spring to autumn. Additionally, juveniles of flatfish (Pleuronectids) and bivalves were found in the scaldfish diet in spring, replaced by cumaceans in summer. No dietary overlap between both flatfish species was found across seasons, indicating partitioning of prey resources

  6. The Costs of Evaluating Species Densities and Composition of Snakes to Assess Development Impacts in Amazonia

    PubMed Central

    de Fraga, Rafael; Stow, Adam J.; Magnusson, William E.; Lima, Albertina P.

    2014-01-01

    Studies leading to decision-making for environmental licensing often fail to provide accurate estimates of diversity. Measures of snake diversity are regularly obtained to assess development impacts in the rainforests of the Amazon Basin, but this taxonomic group may be subject to poor detection probabilities. Recently, the Brazilian government tried to standardize sampling designs by the implementation of a system (RAPELD) to quantify biological diversity using spatially-standardized sampling units. Consistency in sampling design allows the detection probabilities to be compared among taxa, and sampling effort and associated cost to be evaluated. The cost effectiveness of detecting snakes has received no attention in Amazonia. Here we tested the effects of reducing sampling effort on estimates of species densities and assemblage composition. We identified snakes in seven plot systems, each standardised with 14 plots. The 250 m long centre line of each plot followed an altitudinal contour. Surveys were repeated four times in each plot and detection probabilities were estimated for the 41 species encountered. Reducing the number of observations, or the size of the sampling modules, caused significant loss of information on species densities and local patterns of variation in assemblage composition. We estimated the cost to find a snake as $ 120 U.S., but general linear models indicated the possibility of identifying differences in assemblage composition for half the overall survey costs. Decisions to reduce sampling effort depend on the importance of lost information to target-issues, and may not be the preferred option if there is the potential for identifying individual snake species requiring specific conservation actions. However, in most studies of human disturbance on species assemblages, it is likely to be more cost-effective to focus on other groups of organisms with higher detection probabilities. PMID:25147930

  7. The costs of evaluating species densities and composition of snakes to assess development impacts in amazonia.

    PubMed

    Fraga, Rafael de; Stow, Adam J; Magnusson, William E; Lima, Albertina P

    2014-01-01

    Studies leading to decision-making for environmental licensing often fail to provide accurate estimates of diversity. Measures of snake diversity are regularly obtained to assess development impacts in the rainforests of the Amazon Basin, but this taxonomic group may be subject to poor detection probabilities. Recently, the Brazilian government tried to standardize sampling designs by the implementation of a system (RAPELD) to quantify biological diversity using spatially-standardized sampling units. Consistency in sampling design allows the detection probabilities to be compared among taxa, and sampling effort and associated cost to be evaluated. The cost effectiveness of detecting snakes has received no attention in Amazonia. Here we tested the effects of reducing sampling effort on estimates of species densities and assemblage composition. We identified snakes in seven plot systems, each standardised with 14 plots. The 250 m long centre line of each plot followed an altitudinal contour. Surveys were repeated four times in each plot and detection probabilities were estimated for the 41 species encountered. Reducing the number of observations, or the size of the sampling modules, caused significant loss of information on species densities and local patterns of variation in assemblage composition. We estimated the cost to find a snake as $ 120 U.S., but general linear models indicated the possibility of identifying differences in assemblage composition for half the overall survey costs. Decisions to reduce sampling effort depend on the importance of lost information to target-issues, and may not be the preferred option if there is the potential for identifying individual snake species requiring specific conservation actions. However, in most studies of human disturbance on species assemblages, it is likely to be more cost-effective to focus on other groups of organisms with higher detection probabilities.

  8. Compounds associated with algal surfaces mediate epiphytic colonization of the marine macroalga Fucus vesiculosus.

    PubMed

    Lachnit, Tim; Fischer, Matthias; Künzel, Sven; Baines, John F; Harder, Tilmann

    2013-05-01

    The macroalga Fucus vesiculosus carries a specific community of surface bacteria. To identify chemical compounds that possibly mediate abundance and community composition of algae-associated bacteria, we tested the effect of surface-available algal compounds on bacterial settlement and community composition under field conditions. Compounds on algal thalli were separated from the surface by extraction with organic solvents and investigated on growth inhibition and settlement of bacterial isolates. Based on in vitro data, partially purified extract fractions were then exposed to bacterial colonizers in vivo followed by bacterial enumeration and community analysis. The polar fraction of the algal surface extract revealed a significant profouling effect for Vibrionales, whereas the nonpolar fraction - containing the xanthophyll pigment fucoxanthin and other unidentified nonpolar surface compounds - revealed a significant 80% reduction of surface colonizing bacteria. The analysis of bacterial surface communities by 454 pyrosequencing demonstrated that the antifouling activity of nonpolar algal surface compounds was targeting the abundance of natural bacterial colonizers rather than the relative composition of bacterial members within the community. Moreover, the bacterial community composition on F. vesiculosus was markedly different from artificial control substrates and chemically manipulated experimental treatments, suggesting that other, nonextractable surface features and/or physical properties render algal-specific epiphytic bacterial communities.

  9. Cyanobacterial-algal cenoses in ordinary chernozems under the impact of different phytoameliorants

    NASA Astrophysics Data System (ADS)

    Dubovik, I. E.; Suyundukov, Ya. T.; Khasanova, R. F.; Shalygina, R. R.

    2016-04-01

    General ecological and taxonomic characteristics of cyanobacterial-algal cenoses in ordinary chernozems under different ameliorative plants (phytoameliorants) were studied in the Trans-Ural region of the Republic of Bashkortostan. A comparative analysis of the taxa of studied cenoses in the soils under leguminous herbs and grasses was performed. The phytoameliorative effect of different herbs and their relationships with cyanobacterial-algal cenoses were examined. Overall, 134 cyanoprokaryotic and algal species belonging to 70 genera, 36 families, 15 orders, and 9 classes were identified. Cyanobacterial-algal cenoses included the divisions of Chlorophyta, Cyanoprokaryota, Xanthophyta, Bacillariophyta, and Euglenophyta. Representatives of Ch-, X-, CF-, and P-forms were the leading ecobiomorphs in the studied cenoses.

  10. Divergence in periphytic algal assemblages on bryophyte and bedrock substrata: potential for differential response to environmental variation

    NASA Astrophysics Data System (ADS)

    Greenwood, J.; Rosemond, A.

    2005-05-01

    Algae grow on a variety of substrata and their response to environmental variables may be substratum-dependent. To examine the potential effects of variation in nutrient and light availability on periphyton from different substrata, algal biovolume and assemblage composition were examined on moss, liverwort and bedrock. The comparison was conducted in one nutrient-enriched and one control forested headwater stream, both sampled during months with high (May) and low (July) light availability. Assemblages were dominated by diatoms on all substrata; some filamentous reds and cyanophytes also occurred on bedrock. Ordination analysis (NMS) resulted in 3 axes explaining 86.6% of the variance in species composition and showed relatively strong separation across the three substrata. Bryophytes supported 2×106-fold greater total algal biovolume than bedrock (ANOVA p<0.0001). Periphyton biovolume was generally higher in May than July on all substrata. Two-way ANOVAs month (inferred light effect), stream (inferred nutrient effect)) on individual taxa indicated higher biovolume associated with higher light and lower biovolume associated with higher nutrient concentrations for some taxa, but effects were inconsistent across substratum types. Thus, variability in substratum types in headwater streams appears to support greater diversity of periphyton and response to environmental change than would be observed from a single substratum.

  11. Integrating species composition and leaf nitrogen content to indicate effects of nitrogen deposition.

    PubMed

    Du, Enzai

    2017-02-01

    Nitrogen (N) deposition has been increasing globally and has arisen concerns of its impacts on terrestrial ecosystems. Ecological indicators play an important role in ecosystem monitoring, assessment and management in the context of an anthropogenic transformation of the global N cycle. By integrating species composition and leaf N stoichiometry, a new community N indicator was defined and validated in the understory plots of an N enrichment (as NH4NO3) experiment in an old-growth boreal forest in Northeast China. Three-year N additions showed no significant effect on the understory species richness, but an obvious shift in species composition occurred. The response of leaf N content to N additions was generally positive but varied by species. Overall, the community N indicator increased significantly with higher N addition level and soil available N content, being in the shape of a non-linear saturation response curve. The results suggest that the community N indicator could be an effective tool to indicate changes in ecosystem N availability. Critical values of the community N indicator for specific vegetation type could potentially provide useful information for nature conservation managers and policy makers.

  12. Monthly Ensembles in Algal Bloom Predictions on the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Roiha, Petra; Westerlund, Antti; Stipa, Tapani

    2010-05-01

    In this work we explore the statistical features of monthly ensembles and their capability to predict biogeochemical conditions in the Baltic Sea. Operational marine environmental modelling has been considered hard, and consequently there are very few operational ecological models. Operational modelling of harmful algal blooms is harder still, since it is difficult to separate the algal species in models, and in general, very little is known of HAB properties. We present results of an ensemble approach to HAB forecasting in the Baltic, and discuss the applicability of the forecasting method to biochemical modelling. It turns out that HABs are indeed possible to forecast with useful accuracy. For modelling the algal blooms in Baltic Sea we used FMI operational 3-dimensional biogeochemical model to produce seasonal ensemble forecasts for different physical, chemical and biological variables. The modelled variables were temperature, salinity, velocity, silicate, phosphate, nitrate, diatoms, flagellates and two species of potentially toxic filamentous cyanobacteria nodularia spumigena and aphanizomenon flos-aquae. In this work we concentrate to the latter two. Ensembles were produced by running the biogeochemical model several times and forcing it on every run with different set of seasonal weather parameters from ECMWF's mathematically perturbed ensemble prediction forecasts. The ensembles were then analysed by statistical methods and the median, quartiles, minimum and maximum values were calculated for estimating the probable amounts of algae. Validation for the forecast method was made by comparing the final results against available and valid in-situ HAB data.

  13. Response of soil microbial community composition to afforestation with pure and mixed tree species

    NASA Astrophysics Data System (ADS)

    Gunina, Anna; Smith, Andrew; Godbold, Douglas; Kuzyakov, Yakov; Jones, Davey

    2016-04-01

    Afforestation of agricultural land affects soil ecosystem functions by inducing carbon (C) and nitrogen (N) sequestration and promoting shifts in microbial community structure. Soil C and N stocks undergo progressive changes over several decades after forest establishment, particularly in successional forests. In contrast, microbial community structure can be shifted already in the first decade and thus, direct effect of tree species can be revealed. Thus, the aim of this study was to determine how soil microbial community composition is altered by afforestation with either one, two or three species mixtures of trees, which possess strongly contrasting functional traits. The study was conducted at the BangorDIVERSE temperate forest experiment established in 2004 on a former arable soil. Soil samples were collected under single, two and three species mixtures of alder, birch, beech and oak, while contiguous field was chosen as a control. Soil samples were analysed for key quality indicators (total C and N, pH, nitrate and ammonium), and microbial community structure was determined by phospholipid fatty acids (PLFAs) analysis. Ten years after afforestation, total soil C, N and C/N ratios were not strongly affected, with the highest positive changes (up to 20%) for the birch, alder+oak and birch+beech plots. Decrease of C and N contents were observed for the pure beech plot. pH decreased by 1-1.2 units for all forest plots compare to the control soil. Total PLFAs content (370-630 nmol g-1 soil) increased in comparison to the control (315 nmol g-1 soil), resulting in the changes in total PLFAs content from 20 to 100%. Thus, changes of chemical properties (C, N) occur slower than changes of microbial biomarkers at the early stage of afforestation. Bacterial PLFA content was shifted by 20-120%, whereas fungal PLFAs were changed by 50-300%, reflecting stronger impact of afforestation on the recovery of fungal communities than on bacterial. Principal component analysis of

  14. Amatoxin and phallotoxin composition in species of the genus Amanita in Colombia: a taxonomic perspective.

    PubMed

    Vargas, N; Bernal, A; Sarria, V; Franco-Molano, A; Restrepo, S

    2011-11-01

    Some species in the genus Amanita have a great variety of toxic secondary metabolites. They are characterized macroscopically by having a white spore print and free gills, and microscopically by the presence of a divergent hymenophoral trama. Some species of Amanita present in Colombia were chemically characterized by analyzing their toxin composition using HPLC. Samples were collected in oak (Quercus humboldtii) and pine (Pinus radiata) forests. Twelve species were recovered, Amanita fuligineodisca, Amanita xylinivolva, Amanita flavoconia, Amanita rubescens, Amanita bisporigera, Amanita muscaria, Amanita humboldtii, Amanita sororcula, Amanita brunneolocularis, Amanita colombiana, Amanita citrina, Amanita porphyria as well as two unreported species. Results showed that most of the analyzed species have α -amanitin in concentrations ranging from 50 ppm to 6000 ppm. Concentrations of α-amanitin in the pileus were significantly greater than in the stipe. Phalloidin and phallacidin were only present in A. bisporigera. Chromatographic profiles are proposed as an additional taxonomic tool since specific peaks with similar retention times were conserved at the species level.

  15. The Prevalence and Species Composition of Malassezia yeasts in Patients with Clinically Suspected Onychomycosis

    PubMed Central

    Prohic, Asja; Kuskunovic-Vlahovljak, Suada; Sadikovic, Tamara Jovovic; Cavaljuga, Semra

    2015-01-01

    Introduction: There are limited numbers of studies which focused on the identification of Malassezia yeasts to a species level in onychomycosis. Therefore, the aim of our study was to determine the prevalence and species composition of Malassezia yeasts in patients with clinically suspected onychomycosis and to examine if the range of species varies with patient gender, age, site of involvement and clinical pattern of onychomycosis. Methods: Specimens were taken from 785 patients presenting signs of onychomycosis and then incubated on Sabouraud dextrose agar and modified Dixon agar. The yeasts isolated were identified according to their macroscopic and microscopic features and physiological characteristics. Results: Malassezia species were diagnosed both by microscopy and culture in fourteen (1.8%) patients. M. globosa was the predominant, if not only, species identified from nail samples. Mixed cultures were observed in five cases: in 4 cases Malassezia was co-isolated with Candida albicans and in one case with dermatophyte. Fingernails were affected more frequently than toenails (85.7%) and distolateral subungual onychomycosis was the most common clinical type (78.6%). Conclusion: No significant differences were found in the distribution of Malassezia species isolated according to demographic parameters. PMID:26005253

  16. USE OF DETRENDED CORRESPONDENCE ANALYSIS IN EVALUATING FACTORS CONTROLLING SPECIES COMPOSITION OF PERIPHYTON.

    USGS Publications Warehouse

    Leland, Harry V.; Carter, James L.; ,

    1986-01-01

    Detrended correspondence analysis (DCA) was evaluated for its usefulness in elucidating relationships among samples and among species of periphyton in an oligotrophic stream, and for its effectiveness in displaying major gradients where an experimental gradient (copper) affecting species composition was imposed. It was highly sensitive to differences among samples and consistently provided ecologically meaningful species ordinations. Gradients related to seasonality of taxa and year-to-year differences in population densities were evident in DCA ordinations if data for all sampling dates were included, and these gradients complicated interpretation of the copper gradient. Stage of succession was a secondary gradient during exposure and complicated interpretation of the copper gradient after a major disturbance event (flooding).

  17. NREL Algal Biofuels Projects and Partnerships

    SciTech Connect

    2016-10-01

    This fact sheet highlights several algal biofuels research and development projects focused on improving the economics of the algal biofuels production process. These projects should serve as a foundation for the research efforts toward algae as a source of fuels and other chemicals.

  18. A Taste of Algal Genomes from the Joint Genome Institute

    SciTech Connect

    Kuo, Alan; Grigoriev, Igor

    2012-06-17

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis, photosynthesis, and eukaryotic evolution, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE's Joint Genome Institute (JGI). To date JGI has sequenced, assembled, annotated, and released to the public the genomes of 18 species and strains of algae, sampling almost all of the major clades of photosynthetic eukaryotes. With more algal genomes currently undergoing analysis, JGI continues its commitment to driving forward basic and applied algal science. Among these ongoing projects are the pan-genome of the dominant coccolithophore Emiliania huxleyi, the interrelationships between the 4 genomes in the nucleomorph-containing Bigelowiella natans and Guillardia theta, and the search for symbiosis genes of lichens.

  19. Didymosphenia geminata: Algal blooms in oligotrophic streams and rivers

    NASA Astrophysics Data System (ADS)

    Sundareshwar, P. V.; Upadhayay, S.; Abessa, M.; Honomichl, S.; Berdanier, B.; Spaulding, S. A.; Sandvik, C.; Trennepohl, A.

    2011-05-01

    In recent decades, the diatom Didymosphenia geminata has emerged as nuisance species in river systems around the world. This periphytic alga forms large “blooms” in temperate streams, presenting a counterintuitive result: the blooms occur primarily in oligotrophic streams and rivers, where phosphorus (P) availability typically limits primary production. The goal of this study is to examine how high algal biomass is formed under low P conditions. We reveal a biogeochemical process by which D. geminata mats concentrate P from flowing waters. First, the mucopolysaccaride stalks of D. geminata adsorb both iron (Fe) and P. Second, enzymatic and bacterial processes interact with Fe to increase the biological availability of P. We propose that a positive feedback between total stalk biomass and high growth rate is created, which results in abundant P for cell division. The affinity of stalks for Fe in association with iron-phosphorus biogeochemistry suggest a resolution to the paradox of algal blooms in oliogotrophic streams and rivers.

  20. Unraveling algal lipid metabolism: Recent advances in gene identification.

    PubMed

    Khozin-Goldberg, Inna; Cohen, Zvi

    2011-01-01

    Microalgae are now the focus of intensive research due to their potential as a renewable feedstock for biodiesel. This research requires a thorough understanding of the biochemistry and genetics of these organisms' lipid-biosynthesis pathways. Genes encoding lipid-biosynthesis enzymes can now be identified in the genomes of various eukaryotic microalgae. However, an examination of the predicted proteins at the biochemical and molecular levels is mandatory to verify their function. The essential molecular and genetic tools are now available for a comprehensive characterization of genes coding for enzymes of the lipid-biosynthesis pathways in some algal species. This review mainly summarizes the novel information emerging from recently obtained algal gene identification.

  1. Algal polycultures enhance coproduct recycling from hydrothermal liquefaction.

    PubMed

    Godwin, Casey M; Hietala, David C; Lashaway, Aubrey R; Narwani, Anita; Savage, Phillip E; Cardinale, Bradley J

    2017-01-01

    The aim of this study was to determine if polycultures of algae could enhance tolerance to aqueous-phase coproduct (ACP) from hydrothermal liquefaction (HTL) of algal biomass to produce biocrude. The growth of algal monocultures and polycultures was characterized across a range ACP concentrations and sources. All of the monocultures were either killed or inhibited by 2% ACP, but polycultures of the same species were viable at up to 10%. The addition of ACP increased the growth rate (up to 25%) and biomass production (53%) of polycultures, several of which were more productive in ACP than any monoculture was in the presence or absence of ACP. These results suggest that a cultivation process that applies biodiversity to nutrient recycling could produce more algae with less fertilizer consumption.

  2. Species Composition of Bacterial Communities Influences Attraction of Mosquitoes to Experimental Plant Infusions

    PubMed Central

    Ponnusamy, Loganathan; Wesson, Dawn M.; Arellano, Consuelo; Schal, Coby

    2013-01-01

    In the container habitats of immature mosquitoes, catabolism of plant matter and other organic detritus by microbial organisms produces metabolites that mediate the oviposition behavior of Aedes aegypti and Aedes albopictus. Public health agencies commonly use oviposition traps containing plant infusions for monitoring populations of these mosquito species, which are global vectors of dengue viruses. In laboratory experiments, gravid females exhibited significantly diminished responses to experimental infusions made with sterilized white oak leaves, showing that attractive odorants were produced through microbial metabolic activity. We evaluated effects of infusion concentration and fermentation time on attraction of gravid females to infusions made from senescent bamboo or white oak leaves. We used plate counts of heterotrophic bacteria, total counts of 4′,6-diamidino-2-phenylindole-stained bacterial cells, and 16S ribosomal DNA (rDNA) polymerase chain reaction–denaturing gradient gel electrophoresis (DGGE) to show that changes in the relative abundance of bacteria and the species composition of bacterial communities influenced attraction of gravid A. aegypti and A. albopictus mosquitoes to infusions. DGGE profiles showed that bacterial species composition in infusions changed over time. Principal components analysis indicated that oviposition responses to plant infusions were in general most affected by bacterial diversity and abundance. Analysis of bacterial 16S rDNA sequences derived from DGGE bands revealed that Proteo-bacteria (Alpha-, Beta-, Delta-, and Gamma-) were the predominant bacteria detected in both types of plant infusions. Gravid A. aegypti were significantly attracted to a mix of 14 bacterial species cultured from bamboo leaf infusion. The oviposition response of gravid mosquitoes to plant infusions is strongly influenced by abundance and diversity of bacterial species, which in turn is affected by plant species, leaf biomass, and fermentation

  3. Relationships between pigment composition variation and reflectance for plant species from a coastal savannah in California

    NASA Technical Reports Server (NTRS)

    Ustin, Susan L.; Sanderson, Eric W.; Grossman, Yaffa; Hart, Quinn J.

    1993-01-01

    Advances in imaging spectroscopy have indicated that remotely sensed reflectance measurements of the plant canopy may be used to identify and qualify some classes of canopy biochemicals; however, the manner in which differences in biochemical compositions translate into differences is not well understood. Most frequently, multiple linear regression routines have been used to correlate narrow band reflectance values with measured biochemical concentrations. Although some success has been achieved with such methods for given data sets, the bands selected by multiple regression are not consistent between data sets, nor is it always clear what physical or biological basis underlies the correlation. To examine the relationship between biochemical concentration and leaf reflectance signal we chose to focus on the visible spectrum where the primary biochemical absorbances are due to photosynthetic pigments. Pigments provide a range of absorbance features, occur over a range of concentrations in natural samples, and are ecophysiologically important. Concentrations of chlorophyll, for example, have been strongly correlated to foliar nitrogen levels within a species and to photosynthetic capacity across many species. In addition pigments effectively absorb most of the photosynthetically active radiation between 400-700 nm, a spectral region for which silicon detectors have good signal/noise characteristics. Our strategy has been to sample a variety of naturally occurring species to measure leaf reflectance and pigment compositions. We hope to extend our understanding of pigment reflectance effects to interpret small overlapping absorbances of other biochemicals in the infrared region. For this reason, selected samples were also tested to determine total nitrogen, crude protein, cellulose, and lignin levels. Leaf reflectance spectra measured with AVIRIS bandwidths and wavelengths were compared between species and within species and for differences between seasons, for changes

  4. Seasonal variation in biomass and species composition of seaweeds stranded along Port Okha, northwest coast of India

    NASA Astrophysics Data System (ADS)

    Thakur, Mukund C.; Reddy, C. R. K.; Jha, Bhavanath

    2008-06-01

    Port Okha coast, which is known for its luxuriant growth of a diverse assemblage of seaweeds on Saurashtra coast, is found to have abundant quantities of seaweeds being drifted and washed ashore every year. Studies conducted for quantifying the stranded seaweeds from May 2004 to April 2005 showed an average biomass value of 3.10 kg fresh wt/m2/month with maximum being 6.60 kg fresh wt/m2 in April. The stranded weeds constituted a total of 62 species during the entire study period. Of this, Rhodophyta ranked high with 26 species followed by Chlorophyta with 22 species and Phaeophyta with 14 species. The stranded seaweeds that were washed ashore provide valuable floristic information about the intertidal and near shore sub-tidal algae of the respective regions. Although natural senescence of seaweeds is one of the major factors, strong currents primarily forced by tides, also contribute to the uprooting and subsequent drifting of seaweeds on to the beach. This ultimately causes changes in floristic features of the existing algal beds.

  5. Effect of nitrogen, phosphorous, and their interaction on coral reef algal succession in Glover's Reef, Belize.

    PubMed

    McClanahan, T R; Carreiro-Silva, M; DiLorenzo, M

    2007-12-01

    Nitrogen and phosphorous fertilizers were used to determine their short-term summer effects on algal colonization, abundance, and species composition in moderate herbivory treatments. Secondary succession of algae on coral skeletons was examined in four treatments: an untreated control, a pure phosphate fertilizer, a pure nitrogen fertilizer, and an equal mix of the two fertilizers. Turf algae cover was the only measure of algae abundance to respond significantly to fertilization. Turf cover was three times higher in treatments with added nitrogen when compared with the pure phosphorus treatment. These turfs were dominated by green and cyanobacteria taxa, namely Enteromorpha prolifera, Lyngbya confervoides, and two species of Cladophora. The phosphate treatment was dominated by encrusting corallines and the cyanobacteria L. confervoides, while the controls had the highest cover of frondose brown algae, namely Padina sanctae-crucis and two species of Dictyota. Results indicate that turf algae were co-limited by nitrogen and phosphorus but enrichment appeared to inhibit brown frondose algae that currently dominate these reefs. Number of species was lowest on the pure phosphorus and nitrogen treatments, highest in the controls and intermediate in the mixed treatments, which suggests that diversity is reduced most by an imbalanced nutrient ratio.

  6. Constraints to commercialization of algal fuels.

    PubMed

    Chisti, Yusuf

    2013-09-10

    Production of algal crude oil has been achieved in various pilot scale facilities, but whether algal fuels can be produced in sufficient quantity to meaningfully displace petroleum fuels, has been largely overlooked. Limitations to commercialization of algal fuels need to be understood and addressed for any future commercialization. This review identifies the major constraints to commercialization of transport fuels from microalgae. Algae derived fuels are expensive compared to petroleum derived fuels, but this could change. Unfortunately, improved economics of production are not sufficient for an environmentally sustainable production, or its large scale feasibility. A low-cost point supply of concentrated carbon dioxide colocated with the other essential resources is necessary for producing algal fuels. An insufficiency of concentrated carbon dioxide is actually a major impediment to any substantial production of algal fuels. Sustainability of production requires the development of an ability to almost fully recycle the phosphorous and nitrogen nutrients that are necessary for algae culture. Development of a nitrogen biofixation ability to support production of algal fuels ought to be an important long term objective. At sufficiently large scale, a limited supply of freshwater will pose a significant limitation to production even if marine algae are used. Processes for recovering energy from the algal biomass left after the extraction of oil, are required for achieving a net positive energy balance in the algal fuel oil. The near term outlook for widespread use of algal fuels appears bleak, but fuels for niche applications such as in aviation may be likely in the medium term. Genetic and metabolic engineering of microalgae to boost production of fuel oil and ease its recovery, are essential for commercialization of algal fuels. Algae will need to be genetically modified for improved photosynthetic efficiency in the long term.

  7. Temporal Decay in Timber Species Composition and Value in Amazonian Logging Concessions

    PubMed Central

    Peres, Carlos A.

    2016-01-01

    Throughout human history, slow-renewal biological resource populations have been predictably overexploited, often to the point of economic extinction. We assess whether and how this has occurred with timber resources in the Brazilian Amazon. The asynchronous advance of industrial-scale logging frontiers has left regional-scale forest landscapes with varying histories of logging. Initial harvests in unlogged forests can be highly selective, targeting slow-growing, high-grade, shade-tolerant hardwood species, while later harvests tend to focus on fast-growing, light-wooded, long-lived pioneer trees. Brazil accounts for 85% of all native neotropical forest roundlog production, and the State of Pará for almost half of all timber production in Brazilian Amazonia, the largest old-growth tropical timber reserve controlled by any country. Yet the degree to which timber harvests beyond the first-cut can be financially profitable or demographically sustainable remains poorly understood. Here, we use data on legally planned logging of ~17.3 million cubic meters of timber across 314 species extracted from 824 authorized harvest areas in private and community-owned forests, 446 of which reported volumetric composition data by timber species. We document patterns of timber extraction by volume, species composition, and monetary value along aging eastern Amazonian logging frontiers, which are then explained on the basis of historical and environmental variables. Generalized linear models indicate that relatively recent logging operations farthest from heavy-traffic roads are the most selective, concentrating gross revenues on few high-value species. We find no evidence that the post-logging timber species composition and total value of forest stands recovers beyond the first-cut, suggesting that the commercially most valuable timber species become predictably rare or economically extinct in old logging frontiers. In avoiding even more destructive land-use patterns, managing

  8. Temporal Decay in Timber Species Composition and Value in Amazonian Logging Concessions.

    PubMed

    Richardson, Vanessa A; Peres, Carlos A

    2016-01-01

    Throughout human history, slow-renewal biological resource populations have been predictably overexploited, often to the point of economic extinction. We assess whether and how this has occurred with timber resources in the Brazilian Amazon. The asynchronous advance of industrial-scale logging frontiers has left regional-scale forest landscapes with varying histories of logging. Initial harvests in unlogged forests can be highly selective, targeting slow-growing, high-grade, shade-tolerant hardwood species, while later harvests tend to focus on fast-growing, light-wooded, long-lived pioneer trees. Brazil accounts for 85% of all native neotropical forest roundlog production, and the State of Pará for almost half of all timber production in Brazilian Amazonia, the largest old-growth tropical timber reserve controlled by any country. Yet the degree to which timber harvests beyond the first-cut can be financially profitable or demographically sustainable remains poorly understood. Here, we use data on legally planned logging of ~17.3 million cubic meters of timber across 314 species extracted from 824 authorized harvest areas in private and community-owned forests, 446 of which reported volumetric composition data by timber species. We document patterns of timber extraction by volume, species composition, and monetary value along aging eastern Amazonian logging frontiers, which are then explained on the basis of historical and environmental variables. Generalized linear models indicate that relatively recent logging operations farthest from heavy-traffic roads are the most selective, concentrating gross revenues on few high-value species. We find no evidence that the post-logging timber species composition and total value of forest stands recovers beyond the first-cut, suggesting that the commercially most valuable timber species become predictably rare or economically extinct in old logging frontiers. In avoiding even more destructive land-use patterns, managing

  9. Copper removal by algae Gelidium, agar extraction algal waste and granulated algal waste: kinetics and equilibrium.

    PubMed

    Vilar, Vítor J P; Botelho, Cidália M S; Boaventura, Rui A R

    2008-03-01

    Biosorption of copper ions by an industrial algal waste, from agar extraction industry has been studied in a batch system. This biosorbent was compared with the algae Gelidium itself, which is the raw material for agar extraction, and the industrial waste immobilized with polyacrylonitrile (composite material). The effects of contact time, pH, ionic strength (IS) and temperature on the biosorption process have been studied. Equilibrium data follow both Langmuir and Langmuir-Freundlich models. The parameters of Langmuir equilibrium model were: q(max)=33.0mgg(-1), K(L)=0.015mgl(-1); q(max)=16.7mgg(-1), K(L)=0.028mgl(-1) and q(max)=10.3mgg(-1), K(L)=0.160mgl(-1) respectively for Gelidium, algal waste and composite material at pH=5.3, T=20 degrees C and IS=0.001M. Increasing the pH, the number of deprotonated active sites increases and so the uptake capacity of copper ions. In the case of high ionic strengths, the contribution of the electrostatic component to the overall binding decreases, and so the uptake capacity. The temperature has little influence on the uptake capacity principally for low equilibrium copper concentrations. Changes in standard enthalpy, Gibbs energy and entropy during biosorption were determined. Kinetic data at different solution pH (3, 4 and 5.3) were fitted to pseudo-first-order and pseudo-second-order models. The adsorptive behaviour of biosorbent particles was modelled using a batch reactor mass transfer kinetic model, which successfully predicts Cu(II) concentration profiles.

  10. Predator-induced fleeing behaviors in phytoplankton: a new mechanism for harmful algal bloom formation?

    PubMed

    Harvey, Elizabeth L; Menden-Deuer, Susanne

    2012-01-01

    In the plankton, heterotrophic microbes encounter and ingest phytoplankton prey, which effectively removes >50% of daily phytoplankton production in the ocean and influences global primary production and biochemical cycling rates. Factors such as size, shape, nutritional value, and presence of chemical deterrents are known to affect predation pressure. Effects of movement behaviors of either predator or prey on predation pressure, and particularly fleeing behaviors in phytoplankton are thus far unknown. Here, we quantified individual 3D movements, population distributions, and survival rates of the toxic phytoplankton species, Heterosigma akashiwo in response to a ciliate predator and predator-derived cues. We observed predator-induced defense behaviors previously unknown for phytoplankton. Modulation of individual phytoplankton movements during and after predator exposure resulted in an effective separation of predator and prey species. The strongest avoidance behaviors were observed when H. akashiwo co-occurred with an actively grazing predator. Predator-induced changes in phytoplankton movements resulted in a reduction in encounter rate and a 3-fold increase in net algal population growth rate. A spatially explicit population model predicted rapid phytoplankton bloom formation only when fleeing behaviors were incorporated. These model predictions reflected field observations of rapid H. akashiwo harmful algal bloom (HAB) formation in the coastal ocean. Our results document a novel behavior in phytoplankton that can significantly reduce predation pressure and suggests a new mechanism for HAB formation. Phytoplankton behaviors that minimize predatory losses, maximize resource acquisition, and alter community composition and distribution patterns could have major implications for our understanding and predictive capacity of marine primary production and biochemical cycling rates.

  11. Influence of global change-related impacts on the mercury toxicity of freshwater algal communities.

    PubMed

    Val, Jonatan; Muñiz, Selene; Gomà, Joan; Navarro, Enrique

    2016-01-01

    The climatic-change related increase of temperatures, are expected to alter the distribution and survival of freshwater species, ecosystem functions, and also the effects of toxicants to aquatic biota. This study has thus assessed, as a first time, the modulating effect of climate-change drivers on the mercury (Hg) toxicity of freshwater algal photosynthesis. Natural benthic algal communities (periphyton) have been exposed to Hg under present and future temperature scenarios (rise of 5 °C). The modulating effect of other factors (also altered by global change), as the quality and amount of suspended and dissolved materials in the rivers, has been also assessed, exposing algae to Hg in natural river water or a synthetic medium. The EC50 values ranged from the 0.15-0.74 ppm for the most sensitive communities, to the 24-40 ppm for the most tolerant. The higher tolerance shown by communities exposed to higher Hg concentrations, as Jabarrella was in agreement with the Pollution Induced Community Tolerance concept. In other cases, the dominance of the invasive diatom Didymosphenia geminata explained the tolerance or sensitivity of the community to the Hg toxicity. Results shown that while increases in the suspended solids reduced Hg bioavailability, changes in the dissolved materials - such as organic carbon - may increase it and thus its toxic effects on biota. The impacts of the increase of temperatures on the toxicological behaviour of periphyton (combining both changes at species composition and physiological acclimation) would be certainly modulated by other effects at the land level (i.e., alterations in the amount and quality of dissolved and particulate substances arriving to the rivers).

  12. Mapping Forest Species Composition Using Imaging Spectrometry and Airborne Laser Scanner Data

    NASA Astrophysics Data System (ADS)

    Torabzadeh, H.; Morsdorf, F.; Leiterer, R.; Schaepman, M. E.

    2013-09-01

    Accurate mapping of forest species composition is an important aspect of monitoring and management planning related to ecosystem functions and services associated with water refinement, carbon sequestration, biodiversity, and wildlife habitats. Although different vegetation species often have unique spectral signatures, mapping based on spectral reflectance properties alone is often an ill-posed problem, since the spectral signature is as well influenced by age, canopy gaps, shadows and background characteristics. Thus, reducing the unknown variation by knowing the structural parameters of different species should improve determination procedures. In this study we combine imaging spectrometry (IS) and airborne laser scanning (ALS) data of a mixed needle and broadleaf forest to differentiate tree species more accurately as single-instrument data could do. Since forest inventory data in dense forests involve uncertainties, we tried to refine them by using individual tree crowns (ITC) position and shape, which derived from ALS data. Comparison of the extracted spectra from original field data and the modified one shows how ALS-derived shape and position of ITCs can improve separablity of the different species. The spatially explicit information layers containing both the spectral and structural components from the IS and ALS datasets were then combined by using a non-parametric support vector machine (SVM) classifier.

  13. Use of DNA barcoding to reveal species composition of convenience seafood.

    PubMed

    Huxley-Jones, Elizabeth; Shaw, Jennifer L A; Fletcher, Carly; Parnell, Juliette; Watts, Phillip C

    2012-04-01

    Increased education of consumers can be an effective tool for conservation of commercially harvested marine species when product labeling is accurate and allows an informed choice. However, generic labeling (e.g., as white fish or surimi) and mislabeling of seafood prevents this and may erode consumer confidence in seafood product labels in general. We used DNA barcoding to identify the species composition of two types of convenience seafood (i.e., products processed for ease of consumption): fish fingers (long pieces of fish covered with bread crumbs or batter, n = 241) and seafood sticks (long pieces of cooked fish, n = 30). In products labeled as either white fish or surimi, four teleost species were present. Less than 1.5% of fish fingers with species-specific information were mislabeled. Results of other studies show substantially more mislabeling (e.g., >25%) of teleost products, which likely reflects the lower economic gains associated with mislabeling of convenience seafood compared with whole fillets. In addition to species identification, seafood product labels should be required to contain information about, for example, harvesting practices, and our data indicate that consumers can have reasonable confidence in the accuracy of the labels of convenience seafood and thus select brands on the basis of information about current fisheries practice.

  14. Species Composition and Distribution of Adult Anopheles (Diptera: Culicidae) in Panama

    PubMed Central

    LOAIZA, J. R.; BERMINGHAM, E.; SCOTT, M. E.; ROVIRA, J. R.; CONN, J. E.

    2010-01-01

    Anopheles (Diptera: Culicidae) species composition and distribution were studied using human landing catch data over a 35-yr period in Panama. Mosquitoes were collected from 77 sites during 228 field trips carried out by members of the National Malaria Eradication Service. Fourteen Anopheles species were identified. The highest average human biting rates were recorded from Anopheles (Nyssorhynchus) albimanus (Wiedemann) (9.8 bites/person/night) and Anopheles (Anopheles) punctimacula (Dyar and Knab) (6.2 bites/person/night). These two species were also the most common, present in 99.1 and 74.9%, respectively, of the sites. Anopheles (Nyssorhynchus) aquasalis (Curry) was encountered mostly in the indigenous Kuna Yala Comarca along the eastern Atlantic coast, where malaria case history and average human biting rate (9.3 bites/person/night) suggest a local role in malaria transmission. An. albimanus, An. punctimacula, and Anopheles (Anopheles) vestitipennis (Dyar and Knab) were more abundant during the rainy season (May–December), whereas An. aquasalis was more abundant in the dry season (January–April). Other vector species collected in this study were Anopheles (Kerteszia) neivai (Howard, Dyar, and Knab) and Anopheles (Anopheles) pseudopunctipennis s.l. (Theobald). High diversity of Anopheles species and six confirmed malaria vectors in endemic areas of Panama emphasize the need for more detailed studies to better understand malaria transmission dynamics. PMID:18826025

  15. Effect of growth phase on the fatty acid compositions of four species of marine diatoms

    NASA Astrophysics Data System (ADS)

    Liang, Ying; Mai, Kangsen

    2005-04-01

    The fatty acid compositions of four species of marine diatoms ( Chaetoceros gracilis MACC/B13, Cylindrotheca fusiformis MACC/B211, Phaeodactylum tricornutum MACC/B221 and Nitzschia closterium MACC/B222), cultivated at 22°C±1°C with the salinity of 28 in f/2 medium and harvested in the exponential growth phase, the early stationary phase and the late stationary phase, were determined. The results showed that growth phase has significant effect on most fatty acid contents in the four species of marine diatoms. The proportions of 16:0 and 16:1n-7 fatty acids increased while those of 16:3n-4 and eicosapentaenoic acid (EPA) decreased with increasing culture age in all species studied. The subtotal of saturated fatty acids (SFA) increased with the increasing culture age in all species with the exception of B13. The subtotal of monounsaturated fatty acids (MUFA) increased while that of polyunsaturated fatty acids (PUFA) decreased with culture age in the four species of marine diatoms. MUFA reached their lowest value in the exponential growth phase, whereas PUFA reached their highest value in the same phase.

  16. Estimates of nuclear DNA content in red algal lineages

    PubMed Central

    Kapraun, Donald F.; Freshwater, D. Wilson

    2012-01-01

    Background and aims The red algae are an evolutionarily ancient group of predominantly marine organisms with an estimated 6000 species. Consensus higher-level molecular phylogenies support a basal split between the unicellular Cyanidiophytina and morphologically diverse Rhodophytina, the later subphylum containing most red algal species. The Rhodophytina is divided into six classes, of which five represent early diverging lineages of generally uninucleate species, whose evolutionary relationships are poorly resolved. The remaining species compose the large (27 currently recognized orders), morphologically diverse and typically multinucleate Florideophyceae. Nuclear DNA content estimates have been published for <1 % of the described red algae. The present investigation summarizes the state of our knowledge and expands our coverage of DNA content information from 196 isolates of red algae. Methodology The DNA-localizing fluorochrome DAPI (4′,6-diamidino-2-phenylindole) and RBC (chicken erythrocytes) standards were used to estimate 2C values with static microspectrophotometry. Principal results Nuclear DNA contents are reported for 196 isolates of red algae, almost doubling the number of estimates available for these organisms. Present results also confirm the reported DNA content range of 0.1–2.8 pg, with species of Ceramiales, Nemaliales and Palmariales containing apparently polyploid genomes with 2C = 2.8, 2.3 and 2.8 pg, respectively. Conclusions Early diverging red algal lineages are characterized by relatively small 2C DNA contents while a wide range of 2C values is found within the derived Florideophyceae. An overall correlation between phylogenetic placement and 2C DNA content is not apparent; however, genome size data are available for only a small portion of red algae. Current data do support polyploidy and aneuploidy as pervasive features of red algal genome evolution. PMID:22479676

  17. Phytotoxic activity and chemical composition of aqueous volatile fractions from Eucalyptus species.

    PubMed

    Zhang, Jinbiao; An, Min; Wu, Hanwen; Liu, De Li; Stanton, Rex

    2014-01-01

    The essential oils from four Eucalyptus species (E. spathulata, E. salubris, E. brockwayii and E. dundasii) have been previously confirmed to have stronger inhibitory effects on germination and seedling growth of silverleaf nightshade (Solanum elaeagnifolium Cav.). The aqueous volatile fractions (AVFs) were the water soluble volatile fractions produced together with the essential oils (water insoluble fractions) during the steam distillation process. The aim of this study was to further assess the phytotoxicity of AVFs from the four Eucalyptus species and their chemical composition. The fresh leaves of the four Eucalyptus species were used for the extraction of AVFs. The AVFs were tested for their phytotoxic effects on the perennial weed, silverleaf nightshade under laboratory conditions. The chemical compositions of the AVFs were determined by gas chromatograph-mass spectrometry (GC-MS). Our results showed that the AVFs had strong inhibition on the germination and seedling growth of silverleaf nightshade. The inhibition index increased with the increasing concentrations of AVFs. The inhibitory effects of the AVFs varied between different Eucalyptus species. The AVF from E. salubris demonstrated the highest inhibitory activity on the weed tested, with complete inhibition on germination and seedling growth at a concentration of 75%. The GC-MS analysis revealed that 1,8-cineole, isopentyl isovalerate, isomenthol, pinocarvone, trans-pinocarveol, alpha-terpineol and globulol were the main compounds in the AVFs. These results indicated that all AVFs tested had differential inhibition on the germination and seedling growth of silverleaf nightshade, which could be due to the joint effects of compounds present in the AVFs as these compounds were present in different quantities and ratio between Eucalyptus species.

  18. Species richness and trait composition of butterfly assemblages change along an altitudinal gradient.

    PubMed

    Leingärtner, Annette; Krauss, Jochen; Steffan-Dewenter, Ingolf

    2014-06-01

    Species richness patterns along altitudinal gradients are well-documented ecological phenomena, yet very little data are available on how environmental filtering processes influence the composition and traits of butterfly assemblages at high altitudes. We have studied the diversity patterns of butterfly species at 34 sites along an altitudinal gradient ranging from 600 to 2,000 m a.s.l. in the National Park Berchtesgaden (Germany) and analysed traits of butterfly assemblages associated with dispersal capacity, reproductive strategies and developmental time from lowlands to highlands, including phylogenetic analyses. We found a linear decline in butterfly species richness along the altitudinal gradient, but the phylogenetic relatedness of the butterfly assemblages did not increase with altitude. Compared to butterfly assemblages at lower altitudes, those at higher altitudes were composed of species with larger wings (on average 9%) which laid an average of 68% more eggs. In contrast, egg maturation time in butterfly assemblages decreased by about 22% along the altitudinal gradient. Further, butterfly assemblages at higher altitudes were increasingly dominated by less widespread species. Based on our abundance data, but not on data in the literature, population density increased with altitude, suggesting a reversed density-distribution relationship, with higher population densities of habitat specialists in harsh environments. In conclusion, our data provide evidence for significant shifts in the composition of butterfly assemblages and for the dominance of different traits along the altitudinal gradient. In our study, these changes were mainly driven by environmental factors, whereas phylogenetic filtering played a minor role along the studied altitudinal range.

  19. Assessing the long-term species composition predicted by PrognAus

    PubMed Central

    Huber, Markus O.

    2010-01-01

    Tree growth models are supposed to contain stand growth laws as so called “emergent properties” which derive from interactions of individual-tree growth and mortality functions. This study investigates whether the evolving tree species composition in a long term simulation by the distance-independent tree growth model PrognAus matches the species composition of the potential natural vegetation type which is expected to occur if one refrains from further management interventions and major disturbances, climate change, and changes in site conditions can be excluded. For this purpose the development of 6933 sample plots of the Austrian National Forest Inventory was predicted for 2500 years. The resulting species proportions, derived from volume per hectare of 15 tree species or species groups, were used to classify every sample plot according to potential natural forest types, following a classification scheme based on expert knowledge. These simulated potential natural vegetation types were compared with expert reconstructions of the sample plots of the Austrian National Forest Inventory. A total of 5789 plots were actually classified with the scheme; in 33% of the cases the classification on the basis of the PrognAus-simulations was identical with the classification by the Austrian National Forest Inventory. A predominantly correct classification was achieved for the subalpine Picea abies-type and the Fagus sylvatica-type although PrognAus showed a tendency to overestimate the proportion of F. sylvatica and P. abies. Weaknesses in the ability to simulate forest types dominated by Quercus spp., Acer spp., and Pinus sylvestris were identified. This shortcoming might be caused by the mortality model which allows a larger diameter at breast height for F. sylvatica or by the ingrowth model whose terms for the consideration of inter-specific competition may lead to a disadvantage of Quercus spp., P. sylvestris, and Abies alba. Moreover, the ingrowth model might be

  20. Phytotoxic Activity and Chemical Composition of Aqueous Volatile Fractions from Eucalyptus Species

    PubMed Central

    Zhang, Jinbiao; An, Min; Wu, Hanwen; Liu, De Li; Stanton, Rex

    2014-01-01

    The essential oils from four Eucalyptus species (E. spathulata, E. salubris, E. brockwayii and E. dundasii) have been previously confirmed to have stronger inhibitory effects on germination and seedling growth of silverleaf nightshade (Solanum elaeagnifolium Cav.). The aqueous volatile fractions (AVFs) were the water soluble volatile fractions produced together with the essential oils (water insoluble fractions) during the steam distillation process. The aim of this study was to further assess the phytotoxicity of AVFs from the four Eucalyptus species and their chemical composition. The fresh leaves of the four Eucalyptus species were used for the extraction of AVFs. The AVFs were tested for their phytotoxic effects on the perennial weed, silverleaf nightshade under laboratory conditions. The chemical compositions of the AVFs were determined by gas chromatograph–mass spectrometry (GC-MS). Our results showed that the AVFs had strong inhibition on the germination and seedling growth of silverleaf nightshade. The inhibition index increased with the increasing concentrations of AVFs. The inhibitory effects of the AVFs varied between different Eucalyptus species. The AVF from E. salubris demonstrated the highest inhibitory activity on the weed tested, with complete inhibition on germination and seedling growth at a concentration of 75%. The GC-MS analysis revealed that 1,8-cineole, isopentyl isovalerate, isomenthol, pinocarvone, trans-pinocarveol, alpha-terpineol and globulol were the main compounds in the AVFs. These results indicated that all AVFs tested had differential inhibition on the germination and seedling growth of silverleaf nightshade, which could be due to the joint effects of compounds present in the AVFs as these compounds were present in different quantities and ratio between Eucalyptus species. PMID:24681490

  1. Biofilms of non-Candida albicans Candida species: quantification, structure and matrix composition.

    PubMed

    Silva, Sónia; Henriques, Mariana; Martins, António; Oliveira, Rosário; Williams, David; Azeredo, Joana

    2009-11-01

    Most cases of candidiasis have been attributed to C. albicans, but recently, non- Candida albicans Candida (NCAC) species have been identified as common pathogens. The ability of Candida species to form biofilms has important clinical repercussions due to their increased resistance to antifungal therapy and the ability of yeast cells within the biofilms to withstand host immune defenses. Given this clinical importance of the biofilm growth form, the aim of this study was to characterize biofilms produced by three NCAC species, namely C. parapsilosis, C. tropicalis and C. glabrata. The biofilm forming ability of clinical isolates of C. parapsilosis, C. tropicalis and C. glabrata recovered from different sources, was evaluated by crystal violet staining. The structure and morphological characteristics of the biofilms were also assessed by scanning electron microscopy and the biofilm matrix composition analyzed for protein and carbohydrate content. All NCAC species were able to form biofilms although these were less extensive for C. glabrata compared with C. parapsilosis and C. tropicalis. It was evident that C. parapsilosis biofilm production was highly strain dependent, a feature not evident with C. glabrata and C. tropicalis. Scanning electron microscopy revealed structural differences for biofilms with respect to cell morphology and spatial arrangement. Candida parapsilosis biofilm matrices had large amounts of carbohydrate with less protein. Conversely, matrices extracted from C. tropicalis biofilms had low amounts of carbohydrate and protein. Interestingly, C. glabrata biofilm matrix was high in both protein and carbohydrate content. The present work demonstrates that biofilm forming ability, structure and matrix composition are highly species dependent with additional strain variability occurring with C. parapsilosis.

  2. pCO2 effects on species composition and growth of an ...

    EPA Pesticide Factsheets

    The effects of ongoing changes in ocean carbonate chemistry on plankton ecology have important implications for food webs and biogeochemical cycling. However, conflicting results have emerged regarding species-specific responses to pCO2 enrichment and thus community responses have been difficult to predict. To assess community level effects (e.g., production) of altered carbonate chemistry, studies are needed that capitalize on the benefits of controlled experiments but also retain features of intact ecosystems that may exacerbate or ameliorate the effects observed in single-species or single cohort experiments. We performed incubations of natural plankton communities from Narragansett Bay, RI, USA in winter at ambient bay temperatures (5–13 °C), light and nutrient concentrations under three levels of controlled and constant CO2 concentrations, simulating past, present and future conditions at mean pCO2 levels of 224, 361, and 724 μatm respectively. Samples for carbonate analysis, chlorophyll a, plankton size-abundance, and plankton species composition were collected daily and phytoplankton growth rates in three different size fractions (20 μm) were measured at the end of the 7-day incubation period. Community composition changed during the incubation period with major increases in relative diatom abundance, which were similar across pCO2 treatments. At the end of the experiment, 24-hr growth responses to pCO2 levels varied as a function of cell size. The s

  3. Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species.

    PubMed

    Coleman-Derr, Devin; Desgarennes, Damaris; Fonseca-Garcia, Citlali; Gross, Stephen; Clingenpeel, Scott; Woyke, Tanja; North, Gretchen; Visel, Axel; Partida-Martinez, Laila P; Tringe, Susannah G

    2016-01-01

    Desert plants are hypothesized to survive the environmental stress inherent to these regions in part thanks to symbioses with microorganisms, and yet these microbial species, the communities they form, and the forces that influence them are poorly understood. Here we report the first comprehensive investigation of the microbial communities associated with species of Agave, which are native to semiarid and arid regions of Central and North America and are emerging as biofuel feedstocks. We examined prokaryotic and fungal communities in the rhizosphere, phyllosphere, leaf and root endosphere, as well as proximal and distal soil samples from cultivated and native agaves, through Illumina amplicon sequencing. Phylogenetic profiling revealed that the composition of prokaryotic communities was primarily determined by the plant compartment, whereas the composition of fungal communities was mainly influenced by the biogeography of the host species. Cultivated A. tequilana exhibited lower levels of prokaryotic diversity compared with native agaves, although no differences in microbial diversity were found in the endosphere. Agaves shared core prokaryotic and fungal taxa known to promote plant growth and confer tolerance to abiotic stress, which suggests common principles underpinning Agave-microbe interactions.

  4. [Species and size composition of fishes in Barra de Navidad lagoon, Mexican central Pacific].

    PubMed

    González-Sansón, Gaspar; Aguilar-Betancourt, Consuelo; Kosonoy-Aceves, Daniel; Lucano-Ramírez, Gabriela; Ruiz-Ramírez, Salvador; Flores-Ortega, Juan Ramón; Hinojosa-Larios, Angel; de Asís Silva-Bátiz, Francisco

    2014-03-01

    Coastal lagoons are considered important nursery areas for many coastal fishes. Barra de Navidad coastal lagoon (3.76km2) is important for local economy as it supports tourism development and artisanal fisheries. However, the role of this lagoon in the dynamics of coastal fish populations is scarcely known. Thus, the objectives of this research were: to characterize the water of the lagoon and related weather conditions, to develop a systematic list of the ichthyofauna, and to estimate the proportion of juveniles in the total number of individuals captured of most abundant species. Water and fish samples were collected between March 2011 and February 2012. Physical and chemical variables were measured in rainy and dry seasons. Several fishing gears were used including a cast net, beach purse seine and gillnets of four different mesh sizes. Our results showed that the lagoon is most of the time euhaline (salinity 30-40ups), although it can be mixopolyhaline (salinity 18-30ups) during short periods. Chlorophyll and nutrients concentrations suggested eutrophication in the lagoon. Mean water temperature changed seasonally from 24.9 degrees C (April, high tide) to 31.4 degrees C (October, low tide). Considering ichthyofauna species, a total of 36 448 individuals of 92 species were collected, 31 of them adding up to 95% of the total of individuals caught. Dominant species were Anchoa spp. (44.6%), Diapterus peruvianus (10.5%), Eucinostomus currani (8.1%), Cetengraulis mysticetus (7.8%), Mugil curema (5.2%) and Opisthonema libertate (4.5%). The lagoon is an important juvenile habitat for 22 of the 31 most abundant species. These included several species of commercial importance such as snappers (Lutjanus argentiventris, L. colorado and L. novemfasciatus), snook (Centropomus nigrescens) and white mullet (Mugil curema). Other four species seem to use the lagoon mainly as adults. This paper is the first contribution on the composition of estuarine ichthyofauna in Jalisco

  5. Abundance, species composition of microzooplankton from the coastal waters of Port Blair, South Andaman Island

    PubMed Central

    2012-01-01

    Background Microzooplankton consisting of protists and metazoa <200 μm. It displays unique feeding mechanisms and behaviours that allow them to graze cells up to five times their own volume. They can grow at rates which equal or exceed prey growth and can serve as a viable food source for metazoans. Moreover, they are individually inconspicuous, their recognition as significant consumers of oceanic primary production. The microzooplankton can be the dominant consumers of phytoplankton production in both oligo- and eutrophic regions of the ocean and are capable of consuming >100% of primary production. Results The microzooplankton of the South Andaman Sea were investigated during September 2011 to January 2012. A total of 44 species belong to 19 genera were recorded in this study. Tintinnids made larger contribution to the total abundance (34%) followed in order by dinoflagellates (24%), ciliates (20%) and copepod nauplii (18%). Foraminifera were numerically less (4%). Tintinnids were represented by 20 species belong to 13 genera, Heterotrophic dinoflagellates were represented by 17 species belong to 3 genera and Ciliates comprised 5 species belong to 3 genera. Eutintinus tineus, Tintinnopsis cylindrical, T. incertum, Protoperidinium divergens, Lomaniella oviformes, Strombidium minimum were the most prevalent microzooplankton. Standing stock of tintinnids ranged from 30–80 cells.L-1 and showed a reverse distribution with the distribution of chlorophyll a relatively higher species diversity and equitability was found in polluted harbour areas. Conclusions The change of environmental variability affects the species composition and abundance of microzooplankton varied spatially and temporarily. The observations clearly demonstrated that the harbor area differed considerably from other area in terms of species present and phytoplankton biomass. Further, the phytoplankton abundance is showed to be strongly influenced by tintinnid with respect to the relationship of

  6. Species composition, richness and nestedness of lizard assemblages from Restinga habitats along the brazilian coast.

    PubMed

    Rocha, C F D; Vrcibradic, D; Kiefer, M C; Menezes, V A; Fontes, A F; Hatano, F H; Galdino, C A B; Bergallo, H G; Van Sluys, M

    2014-05-01

    Habitat fragmentation is well known to adversely affect species living in the remaining, relatively isolated, habitat patches, especially for those having small range size and low density. This negative effect has been critical in coastal resting habitats. We analysed the lizard composition and richness of restinga habitats in 16 restinga habitats encompassing three Brazilian states (Rio de Janeiro, Espírito Santo and Bahia) and more than 1500km of the Brazilian coast in order to evaluate if the loss of lizard species following habitat reduction occur in a nested pattern or at random, using the "Nestedness Temperature Calculator" to analyse the distribution pattern of lizard species among the restingas studied. We also estimated the potential capacity that each restinga has to maintain lizard species. Eleven lizard species were recorded in the restingas, although not all species occurred in all areas. The restinga with the richest lizard fauna was Guriri (eight species) whereas the restinga with the lowest richness was Praia do Sul (located at Ilha Grande, a large coastal island). Among the restingas analysed, Jurubatiba, Guriri, Maricá and Praia das Neves, were the most hospitable for lizards. The matrix community temperature of the lizard assemblages was 20.49° (= P <0.00001; 5000 randomisations; randomisation temperature = 51.45° ± 7.18° SD), indicating that lizard assemblages in the coastal restingas exhibited a considerable nested structure. The degree in which an area is hospitable for different assemblages could be used to suggest those with greater value of conservation. We concluded that lizard assemblages in coastal restingas occur at a considerable level of ordination in restinga habitats and that some restinga areas such as Jurubatiba, Guriri, Maricá and Praia das Neves are quite important to preserve lizard diversity of restinga environments.

  7. Effects of habitat composition and landscape structure on worker foraging distances of five bumble bee species.

    PubMed

    Redhead, John W; Dreier, Stephanie; Bourke, Andrew F G; Heard, Matthew S; Jordan, William C; Sumner, Seirian; Wang, Jinliang; Carvell, Claire

    2016-04-01

    Bumble bees (Bombus spp.) are important pollinators of both crops and wildflowers. Their contribution to this essential ecosystem service has been threatened over recent decades by changes in land use, which have led to declines in their populations. In order to design effective conservation measures, it is important to understand the effects of variation in landscape composition and structure on the foraging activities of worker bumble bees. This is because the viability of individual colonies is likely to be affected by the trade-off between the energetic costs of foraging over greater distances and the potential gains from access to additional resources. We used field surveys, molecular genetics, and fine resolution remote sensing to estimate the locations of wild bumble bee nests and to infer foraging distances across a 20-km² agricultural landscape in southern England, UK. We investigated five species, including the rare B. ruderatus and ecologically similar but widespread B. hortorum. We compared worker foraging distances between species and examined how variation in landscape composition and structure affected foraging distances at the colony level. Mean worker foraging distances differed significantly between species. Bombus terrestris, B. lapidarius, and B. ruderatus exhibited significantly greater mean foraging distances (551, 536, and 501 m, respectively) than B. hortorum and B. pascuorum (336 and 272 m, respectively). There was wide variation in worker foraging distances between colonies of the same species, which was in turn strongly influenced by the amount and spatial configuration of available foraging habitats. Shorter foraging distances were found for colonies where the local landscape had high coverage and low fragmentation of semi-natural vegetation, including managed agri-environmental field margins. The strength of relationships between different landscape variables and foraging distance varied between species, for example the strongest

  8. Raman microspectroscopy based sensor of algal lipid unsaturation

    NASA Astrophysics Data System (ADS)

    Samek, Ota; Pilát, Zdeněk; Jonáš, Alexandr; Zemánek, Pavel; Šerý, Mojmír; Ježek, Jan; Bernatová, Silvie; Nedbal, Ladislav; Trtílek, Martin

    2011-05-01

    Raman spectroscopy is a powerful tool for chemical analysis. This technique can elucidate fundamental questions about the metabolic processes and intercellular variability on a single cell level. Therefore, Raman spectroscopy can significantly contribute to the study and use of microalgae in systems biology and biofuel technology. Raman spectroscopy can be combined with optical tweezers. We have employed microfluidic system to deliver the sampled microalgae to the Raman-tweezers. This instrument is able to measure chemical composition of cells and to track metabolic processes in vivo, in real-time and label-free making it possible to detect population variability in a wide array of traits. Moreover, employing an active sorting switch, cells can be separated depending on input parameters obtained from Raman spectra. We focus on algal lipids which are promising potential products for biofuel as well as for nutrition. Important parameter characterizing the algal lipids is the degree of unsaturation of the constituent fatty acids. We demonstrate the capacity of our Raman tweezers based sensor to sort cells according to the degree of unsaturation in lipid storage bodies of individual living algal cells.

  9. Logging impacts on avian species richness and composition differ across latitudes relative to foraging and breeding habitat preferences

    USGS Publications Warehouse

    LaManna, Joseph A.; Martin, Thomas E.

    2016-01-01

    Understanding the causes underlying changes in species diversity is a fundamental pursuit of ecology. Animal species richness and composition often change with decreased forest structural complexity associated with logging. Yet differences in latitude and forest type may strongly influence how species diversity responds to logging. We performed a meta-analysis of logging effects on local species richness and composition of birds across the world and assessed responses by different guilds (nesting strata, foraging strata, diet, and body size). This approach allowed identification of species attributes that might underlie responses to this anthropogenic disturbance. We only examined studies that allowed forests to regrow naturally following logging, and accounted for logging intensity, spatial extent, successional regrowth after logging, and the change in species composition expected due to random assembly from regional species pools. Selective logging in the tropics and clearcut logging in temperate latitudes caused loss of species from nearly all forest strata (ground to canopy), leading to substantial declines in species richness (up to 27% of species). Few species were lost or gained following any intensity of logging in lower-latitude temperate forests, but the relative abundances of these species changed substantially. Selective logging at higher-temperate latitudes generally replaced late-successional specialists with early-successional specialists, leading to no net changes in species richness but large changes in species composition. Removing less basal area during logging mitigated the loss of avian species from all forests and, in some cases, increased diversity in temperate forests. This meta-analysis provides insights into the important role of habitat specialization in determining differential responses of animal communities to logging across tropical and temperate latitudes.

  10. Logging impacts on avian species richness and composition differ across latitudes and foraging and breeding habitat preferences.

    PubMed

    LaManna, Joseph A; Martin, Thomas E

    2016-10-10

    Understanding the causes underlying changes in species diversity is a fundamental pursuit of ecology. Animal species richness and composition often change with decreased forest structural complexity associated with logging. Yet differences in latitude and forest type may strongly influence how species diversity responds to logging. We performed a meta-analysis of logging effects on local species richness and composition of birds across the world and assessed responses by different guilds (nesting strata, foraging strata, diet, and body size). This approach allowed identification of species attributes that might underlie responses to this anthropogenic disturbance. We only examined studies that allowed forests to regrow naturally following logging, and accounted for logging intensity, spatial extent, successional regrowth after logging, and the change in species composition expected due to random assembly from regional species pools. Selective logging in the tropics and clearcut logging in temperate latitudes caused loss of species from nearly all forest strata (ground to canopy), leading to substantial declines in species richness (up to 27% of species). Few species were lost or gained following any intensity of logging in lower-latitude temperate forests, but the relative abundances of these species changed substantially. Selective logging at higher-temperate latitudes generally replaced late-successional specialists with early-successional specialists, leading to no net changes in species richness but large changes in species composition. Removing less basal area during logging mitigated the loss of avian species from all forests and, in some cases, increased diversity in temperate forests. This meta-analysis provides insights into the important role of habitat specialization in determining differential responses of animal communities to logging across tropical and temperate latitudes.

  11. Metabolic systems analysis to advance algal biotechnology.

    PubMed

    Schmidt, Brian J; Lin-Schmidt, Xiefan; Chamberlin, Austin; Salehi-Ashtiani, Kourosh; Papin, Jason A

    2010-07-01

    Algal fuel sources promise unsurpassed yields in a carbon neutral manner that minimizes resource competition between agriculture and fuel crops. Many challenges must be addressed before algal biofuels can be accepted as a component of the fossil fuel replacement strategy. One significant challenge is that the cost of algal fuel production must become competitive with existing fuel alternatives. Algal biofuel production presents the opportunity to fine-tune microbial metabolic machinery for an optimal blend of biomass constituents and desired fuel molecules. Genome-scale model-driven algal metabolic design promises to facilitate both goals by directing the utilization of metabolites in the complex, interconnected metabolic networks to optimize production of the compounds of interest. Network analysis can direct microbial development efforts towards successful strategies and enable quantitative fine-tuning of the network for optimal product yields while maintaining the robustness of the production microbe. Metabolic modeling yields insights into microbial function, guides experiments by generating testable hypotheses, and enables the refinement of knowledge on the specific organism. While the application of such analytical approaches to algal systems is limited to date, metabolic network analysis can improve understanding of algal metabolic systems and play an important role in expediting the adoption of new biofuel technologies.

  12. Semi-volatile inorganic species: importance for atmospheric chemical composition on diurnal and seasonal timescales

    NASA Astrophysics Data System (ADS)

    Pearce, Hana; Mann, Graham; Arnold, Stephen; O'Connor, Fiona; Benduhn, Francois; Rumbold, Steven; Pringle, Kirsty

    2016-04-01

    Nitrate aerosol has become an important driver of reduced European air quality and climate forcing, following reductions in sulphate precursor emissions since the 1980s, and is expected to be more influential in future decades. Measurements from the European Integrated Project on Aerosol and Cloud Climate Air Quality Interactions (EUCAARI) field campaign have shown that semi-volatile aerosol species such as ammonium nitrate can comprise a major component of the sub-micron particulate matter, particularly in high pollution episodes. This presentation will assess the contribution of semi-volatile inorganic aerosol to diurnal and seasonal cycles in atmospheric chemical composition over Europe. We use the UM-UKCA composition-climate model, including the GLOMAP interactive aerosol microphysics module and a recently developed 'hybrid' dissolution solver (HyDis) to accurately represent size-resolved partitioning of ammonia and nitric acid to the particle phase. In particular, we evaluate simulated size-resolved composition variations over Europe through the diurnal cycle, comparing hourly model output to Aerosol Mass Spectrometer observations at several sites during 2008. We will present the results of this composition analysis, in addition to model evaluation from comparisons with European Monitoring for Environmental Protection (EMEP) network and EUCAARI field campaign observations.

  13. Leptospirosis risk increases with changes in species composition of rat populations.

    PubMed

    Theuerkauf, Jörn; Perez, Julie; Taugamoa, Alefosio; Niutoua, Iasinito; Labrousse, Didier; Gula, Roman; Bogdanowicz, Wieslaw; Jourdan, Hervé; Goarant, Cyrille

    2013-04-01

    Rats are major reservoirs of leptospirosis and considered as a main threat to biodiversity. A recent introduction of Rattus rattus to the island of Futuna (Western Polynesia) provided the opportunity to test if a possible change in species composition of rat populations would increase the risk of leptospirosis to humans. We trapped rodents on Wallis and Futuna and assessed Leptospira carriage in 357 rodents (Rattus norvegicus, R. rattus, Rattus exulans, and Mus domesticus) from 2008 to 2012. While Leptospira prevalence in rodents and the composition of rat populations on Futuna fluctuated with rainfall, the biomass of Leptospira-carrying rodents has been continuously rising from 2008 to 2012. Our results suggest that the introduction of R. rattus increases the risk to humans being infected with leptospirosis by rats.

  14. Process for derivatizing carbon nanotubes with diazonium species and compositions thereof

    NASA Technical Reports Server (NTRS)

    Tour, James M. (Inventor); Bahr, Jeffrey L. (Inventor); Yang, Jiping (Inventor)

    2011-01-01

    Methods for the chemical modification of carbon nanotubes involve the derivatization of multi- and single-wall carbon nanotubes, including small diameter (ca. 0.7 nm) single-wall carbon nanotubes, with diazonium species. The method allows the chemical attachment of a variety of organic compounds to the side and ends of carbon nanotubes. These chemically modified nanotubes have applications in polymer composite materials, molecular electronic applications, and sensor devices. The methods of derivatization include electrochemical induced reactions, thermally induced reactions, and photochemically induced reactions. Moreover, when modified with suitable chemical groups, the derivatized nanotubes are chemically compatible with a polymer matrix, allowing transfer of the properties of the nanotubes (such as, mechanical strength or electrical conductivity) to the properties of the composite material as a whole. Furthermore, when modified with suitable chemical groups, the groups can be polymerized to form a polymer that includes carbon nanotubes.

  15. ISOB: A Database of Indigenous Snake Species of Bangladesh with respective known venom composition

    PubMed Central

    Roly, Zahida Yesmin; Hakim, Md Abdul; Zahan, ASM Shahriar; Hossain, M Monzur; Reza, Md Abu

    2015-01-01

    At present there is no well structured database available for the venomous snakes and venom composition of snakes in the world although venom has immense importance in biomedical research. Searching for a specific venom component from NCBI, PDB or public databases is troublesome, because they contain huge amount of data entries. Therefore, we created a database named “ISOB” which is a web accessible unique secondary database that represents the first online available bioinformatics resource showing venom composition of snakes. This database provides a comprehensive overview of seventy-eight indigenous snake species covering description of snakes supplemented with structural information of the relevant individual available venom proteins. We strongly believe that this database will contribute significantly in the field of bioinformatics, environmental research, proteomics, drug development and rationale drug designing. Availability The database is freely available at http://www.snakebd.com/ PMID:25848172

  16. Contrasting patterns of fine-scale herb layer species composition in temperate forests

    NASA Astrophysics Data System (ADS)

    Chudomelová, Markéta; Zelený, David; Li, Ching-Feng

    2017-04-01

    Although being well described at the landscape level, patterns in species composition of forest herb layer are rarely studied at smaller scales. Here, we examined fine-scale environmental determinants and spatial structures of herb layer communities in thermophilous oak- and hornbeam dominated forests of the south-eastern part of the Czech Republic. Species composition of herb layer vegetation and environmental variables were recorded within a fixed grid of 2 × 2 m subplots regularly distributed within 1-ha quadrate plots in three forest stands. For each site, environmental models best explaining species composition were constructed using constrained ordination analysis. Spatial eigenvector mapping was used to model and account for spatial structures in community variation. Mean Ellenberg indicator values calculated for each subplot were used for ecological interpretation of spatially structured residual variation. The amount of variation explained by environmental and spatial models as well as the selection of variables with the best explanatory power differed among sites. As an important environmental factor, relative elevation was common to all three sites, while pH and canopy openness were shared by two sites. Both environmental and community variation was mostly coarse-scaled, as was the spatially structured portion of residual variation. When corrected for bias due to spatial autocorrelation, those environmental factors with already weak explanatory power lost their significance. Only a weak evidence of possibly omitted environmental predictor was found for autocorrelated residuals of site models using mean Ellenberg indicator values. Community structure was determined by different factors at different sites. The relative importance of environmental filtering vs. spatial processes was also site specific, implying that results of fine-scale studies tend to be shaped by local conditions. Contrary to expectations based on other studies, overall dominance of

  17. Closely related intertidal and deep-sea Halomonhystera species have distinct fatty acid compositions

    NASA Astrophysics Data System (ADS)

    Van Campenhout, Jelle; Vanreusel, Ann

    2017-01-01

    The deep-sea free-living nematode Halomonhystera hermesi, dominant in the sulphidic sediments of the Håkon Mosby mud volcano (1280 m, Barent sea slope), is part of the mainly estuarine Halomonhystera disjuncta species complex consisting of five cryptic species (GD1-GD5). Cryptic species have a very similar morphology raising questions on their specific environmental differences. This study analyzed total fatty acid (FA) compositions of H. hermesi and GD1, one of H. hermesi's closest relatives. Additionally, we experimentally investigated the effect of a temperature reduction, salinity increase and sulphide concentrations on GD1's FA composition. Because nematodes are expected to have low amounts of storage FA, total FA compositions most likely reflect FA contents of cellular membranes. The deep-sea nematode H. hermesi had significantly lower saturation levels and increased highly unsaturated fatty acid (HUFAs) proportions due to the presence of docosahexanoic acid (DHA—22:6ω3) and higher eicosapentaenoic acid (EPA—20:5ω3) proportions. HUFAs were absent in H. hermesi's food source indicating the ability and need for this nematode to synthesize HUFAs in a deep-sea environment. Our experimental data revealed that only a decrease in temperature resulted in lower saturated fatty acids proportions, indicating that the FA content of H. hermesi is most likely a response to temperature but not to sulphide concentrations or salinity differences. In experimental nematodes, EPA proportions were low and DHA was absent indicating that other factors than temperature, salinity and sulphides mediate the presence of these HUFAs in H. hermesi.

  18. Spatial distribution and species composition of small pelagic fishes in the Gulf of California.

    PubMed

    Lanz, Edgar; Nevárez-Martínez, Manuel O; López-Martínez, Juana; Dworak, Juan A

    2008-06-01

    Traditional regionalization methods in fisheries based on provinces or major fishing areas, includes large and arbitrary grids in which basic statistics or inferences on distribution or abundance are made. We describe a method for regionalization and analysis of fishing activities for small pelagic fisheries in the Gulf of California based on spatial patterns of landing and catch data in a Geographic Information System (GIS) environment. A fisheries database from logbooks with spatial attributes from October 2002 to June 2007 was analyzed. Landings and catching data were transformed to a Weighted Region Index (WRI) by using fuzzy logic operators. The WRI revealed fishing action centers characterized by areas with the highest WRI values, and a hierarchy for the relative importance of the regions was established. Guaymas, Desemboque de Caborca, Isla Patos, and Bahia San Rafael they were the most prominent ones. An analysis of the relative frequency of species composition showed that the Pacific sardine had an over 80 % abundance in the midriff islands, and remained as the most important in the upper gulf regions, while in the central part of the gulf, relative abundances of Pacific sardine and Northern anchovy were more balanced. Relative abundance of mackerel was significantly larger around Isla Patos than in any other place. Guaymas had the largest relative composition of Northern anchovy and the lowest values for Pacific sardine. Desemboque de Caborca showed the largest homogeneity in species relative composition. It is important to highlight that this results come from in situ data, while the results previously reported come from landing statistics by port. Therefore, the present method acknowledges the spatial differences of species by regions, additional to the traditional time series analysis.

  19. Sixty years in algal physiology and photosynthesis.

    PubMed

    Pirson, A

    1994-06-01

    This personal perspective records research experiences in chemistry and biology at four German universities, two before and two after World War II. The research themes came from cytophysiology of green unicellular algae, in particular their photosynthesis. The function of inorganic ions in photosynthesis and dark respiration was investigated at different degrees of specific mineral stress (deficiencies), and the kinetics of recovery followed after the addition of the missing element. Two types of recovery of photosynthesis were observed: indirect restitution via growth processes and immediate normalisation. From the latter case (K(+), phosphate, Mn(++)) the effect of manganese was emphasized as its role in photosynthetic O2 evolution became established during our research. Other themes of our group, with some bearing on photosynthesis were: synchronization of cell growth by light-dark change and effects of blue (vs. red) light on the composition of green cells. Some experiences in connection with algal mass cultures are included. Discussion of several editorial projects shows how photosynthesis, as an orginally separated field of plant biochemistry and biophysics, became included into general cell physiology and even ecophysiology of green plants. The paper contains an appreciation of the authors' main mentor Kurt Noack (1888-1963) and of Ernst Georg Pringsheim (1881-1970), founder of experimental phycology.

  20. Gamma-radiation-induced wood-plastic composites from Syrian tree species

    NASA Astrophysics Data System (ADS)

    Bakraji, Elias Hanna; Salman, Numan; Al-kassiri, Haroun

    2001-05-01

    Wood-plastic composites (WPC) have been prepared with five low-grade woods, native to Syria, using three monomer systems; acrylamide, butylmethacrylate, and styrene, with methanol as the swelling solvent. Polymerization was induced at various radiation doses (10, 20, and 30 kGy) at a dose rate of 3.5 kGy/h using a 60Co gamma radiation source. Some physical properties of WPC, namely polymer loading and compression strength have been measured. The polymer loading decreases approximately with increasing density of the wood species used.

  1. Context matters: matrix vegetation influences native and exotic species composition on habitat islands.

    PubMed

    Wiser, Susan K; Buxton, Rowan P

    2008-02-01

    The extensive research on plant communities of natural-habitat islands has primarily focused on the "islands." The island analogy, however, potentially limits understanding of processes influencing composition on habitat islands because the nature of their matrix is overlooked. We determine how plant community structure of the surrounding matrix influences vegetation on volcanic outcrops in the modified landscape of Banks Peninsula, New Zealand. Our primary purpose is to address whether the matrix is more important for recently established exotic species than it is for well-established native species and whether such invasion by exotics has led to homogenization of the outcrop flora. To test this, we examined our data at three spatial scales: that of the entire outcrop flora, between individual outcrops and their immediate surrounding matrix, and between individual outcrop faces and the individual relevés of the immediate surrounding matrix. We found that 81% of the native flora and 90% of the exotic flora also occur in the matrix. This high level of species shared between the outcrop and matrix persists at the scale of individual outcrop faces (68% of the total flora of individual faces is shared with the matrix). We predicted that floras from different outcrops would vary in their distinctiveness from their immediate matrix. We found Bray-Curtis distance coefficient values to range from 0.26 to 0.64; these were even higher at the outcrop-face scale. Variability in outcrop distinctiveness relates primarily to the outcrop face properties of area, vegetation height, and soil depth, and matrix properties of vegetation structure and vegetation heterogeneity. The effect of the vegetation structure of the matrix is more pronounced on the exotic than on the native outcrop flora. The component of composition and structure of the matrix that was independent of outcrop properties and local environment accounts for similar levels of explainable variation in total and native

  2. The biological activities and chemical composition of Pereskia species (Cactaceae)--a review.

    PubMed

    Pinto, Nícolas de Castro Campos; Scio, Elita

    2014-09-01

    The exploration of nature as a source of sustainable, novel bioactive substances continues to grow as natural products play a significant role in the search for new therapeutic and agricultural agents. In this context, plants of the genus Pereskia (Cactaceae) have been studied for their biological activities, and are evolving as an interesting subject in the search for new, bioactive compounds. These species are commonly used as human foodstuffs and in traditional medicine to treat a variety of diseases. This review focuses on the bioactivity and chemical composition of the genus Pereskia, and aims to stimulate further studies on the chemistry and biological potential of the genus.

  3. Chemical compositions and larvicidal activities of leaf essential oils from two eucalyptus species.

    PubMed

    Cheng, Sen-Sung; Huang, Chin-Gi; Chen, Ying-Ju; Yu, Jane-Jane; Chen, Wei-June; Chang, Shang-Tzen

    2009-01-01

    In the current study, the mosquito larvicidal activity of leaf essential oils and their constituents from two eucalyptus species (Eucalyptus camaldulensis and Eucalyptus urophylla) against two mosquito species, Aedes aegypti and Aedes albopictus, was investigated. In addition, the chemical compositions of the leaf essential oils were analyzed using gas chromatography-mass spectrometry. Results from the larvicidal tests revealed that essential oil from the leaves of E. camaldulensis had an excellent inhibitory effect against both A. aegypti and A. albopictus larvae. The 12 pure constituents extracted from the two eucalyptus leaf essential oils were also tested individually against two mosquito larvae. Among the six effective constituents, alpha-terpinene exhibits the best larvicidal effect against both A. aegypti and A. albopictus larvae. Results of this study show that the leaf essential oil of E. camaldulensis and its effective constituents might be considered as a potent source for the production of fine natural larvicides.

  4. Glucosinolate composition of young shoots and flower buds of capers (Capparis species) growing wild in Turkey.

    PubMed

    Matthäus, Bertrand; Ozcan, Musa

    2002-12-04

    The content and glucosinolate composition of young shoots and raw flower buds of Capparis spinosa var. spinosa and Capparis ovata Desf. var. canescens at three different sizes (x 13 mm) were investigated by HPLC with UV detection. Samples were harvested in August 2001 in Turkey. Twelve different glucosinolates were identified in the young shoots and buds of both species. Total content of glucosinolates ranged from 6.55 micromol/g (large buds of C. spinosa) to 45.56 micromol/g (young shoots of C. ovata). The main glucosinolate was glucocapperin, which amounted to approximately 90% of the total glucosinolates. In both species the total glucosinolate content varied in dependence on the bud size, whereas a greater variability was given for buds from C. spinosa.

  5. Study of cnidarian-algal symbiosis in the "omics" age.

    PubMed

    Meyer, Eli; Weis, Virginia M

    2012-08-01

    The symbiotic associations between cnidarians and dinoflagellate algae (Symbiodinium) support productive and diverse ecosystems in coral reefs. Many aspects of this association, including the mechanistic basis of host-symbiont recognition and metabolic interaction, remain poorly understood. The first completed genome sequence for a symbiotic anthozoan is now available (the coral Acropora digitifera), and extensive expressed sequence tag resources are available for a variety of other symbiotic corals and anemones. These resources make it possible to profile gene expression, protein abundance, and protein localization associated with the symbiotic state. Here we review the history of "omics" studies of cnidarian-algal symbiosis and the current availability of sequence resources for corals and anemones, identifying genes putatively involved in symbiosis across 10 anthozoan species. The public availability of candidate symbiosis-associated genes leaves the field of cnidarian-algal symbiosis poised for in-depth comparative studies of sequence diversity and gene expression and for targeted functional studies of genes associated with symbiosis. Reviewing the progress to date suggests directions for future investigations of cnidarian-algal symbiosis that include (i) sequencing of Symbiodinium, (ii) proteomic analysis of the symbiosome membrane complex, (iii) glycomic analysis of Symbiodinium cell surfaces, and (iv) expression profiling of the gastrodermal cells hosting Symbiodinium.

  6. Micro-structured surfaces for algal biofilm growth

    NASA Astrophysics Data System (ADS)

    Sathananthan, Suthamathy; Genin, Scott N.; Aitchison, J. Stewart; Allen, D. Grant

    2013-12-01

    It is well known that cells respond to structured surface cues that are on the micro/nanometer scale. Tissue engineering and bio-fouling fields have utilized the semiconductor device fabrication processes to make micro- and nanometer patterned surfaces to study animal cell tissue formation and to prevent algae attachment on marine surfaces respectively. In this paper we describe the use of micro-structured surfaces to study the attachment and growth of algal films. This paper gives an overview of how micro-structured surfaces are made for this purpose, how they are incorporated into a photo bioreactor and how this patterning influences the growth of an algal biofilm. Our results suggest that surface patterning with deeper V-groove patterns that are of the same size scale as the algal species has resulted in higher biomass productivity giving them a chance to embed and attach on the slope and flat surfaces whereas shallower size grooves and completely flat surfaces did not show this trend.

  7. Species composition and diversity of macrobenthos in the intertidal zone of Xiangshan bay, China

    NASA Astrophysics Data System (ADS)

    Jiao, Haifeng; Zheng, Dan; You, Zhongjie; Xu, Nianjun; Lou, Dan; Huang, Chengwei

    2015-04-01

    Xiangshan bay is a narrow semi-closed bay and situated on the northwestern coast of the East China Sea. Over past decades, it has become to a major bay with intensive human activities, dense urbanized area, and poor water quality. The aim of this paper was to reveal the ecological status through the elucidation of the species composition, abundance, biomass and diversity of macrobenthos in this bay. Six intertidal sections were surveyed from January 2007 to November 2008 quarterly. Sections TG, HD and XH are located in the three inner bays, sections QJ and WS are located near the thermal power plants, and section XX is located at the outer part of Xiangshan Bay. Great variations in macrobenthos community were indentified, and the species composition of the community in the present study showed the dominance in the order of molluscs (bivalves and gastropods), crustaceans and others, and only few Polychaeta were recorded. Only three dominant species, Littorina brevicula, Ilyplax tansuiensis, and Cerithidea cingulata were collected in all the sections, and a total of 19 dominant species were recorded only in one section. Two-way ANOVA analyses of abundance indicated that there were significant differences among sections or seasons. Shannon-Wiener diversity index ( H') had its maximum (2.45) in section QJ, and minimum (1.76) in section TG. Multiple irregular k-dominance plots clearly showed that the study area was polluted and the macrobenthos community was under stress. We conclude that the macrobenthos of Xiangshan Bay have been disturbed by human activities, especially at the interior bay.

  8. Biological Soil Crusts from Coastal Dunes at the Baltic Sea: Cyanobacterial and Algal Biodiversity and Related Soil Properties.

    PubMed

    Schulz, Karoline; Mikhailyuk, Tatiana; Dreßler, Mirko; Leinweber, Peter; Karsten, Ulf

    2016-01-01

    Biological soil crusts (BSCs) are known as "ecosystem-engineers" that have important, multifunctional ecological roles in primary production, in nutrient and hydrological cycles, and in stabilization of soils. These communities, however, are almost unstudied in coastal dunes of the temperate zone. Hence, for the first time, the biodiversity of cyanobacterial and algal dominated BSCs collected in five dunes from the southern Baltic Sea coast on the islands Rügen and Usedom (Germany) was investigated in connection with physicochemical soil parameters. The species composition of cyanobacteria and algae was identified with direct determination of crust subsamples, cultural methods, and diatom slides. To investigate the influence of soil properties on species composition, the texture, pH, electrical conductivity, carbonate content, total contents of carbon, nitrogen, phosphorus, and the bioavailable phosphorus-fraction (PO4 (3-)) were analyzed in adjacent BSC-free surface soils at each study site. The data indicate that BSCs in coastal dunes of the southern Baltic Sea represent an ecologically important vegetation form with a surprisingly high site-specific diversity of 19 cyanobacteria, 51 non-diatom algae, and 55 diatoms. All dominant species of the genera Coleofasciculus, Lyngbya, Microcoleus, Nostoc, Hydrocoryne, Leptolyngbya, Klebsormidium, and Lobochlamys are typical aero-terrestrial cyanobacteria and algae, respectively. This first study of coastal sand dunes in the Baltic region provides compelling evidence that here the BSCs were dominated by cyanobacteria, algae, or a mixture of both. Among the physicochemical soil properties, the total phosphorus content of the BSC-free sand was the only factor that significantly influenced the cyanobacterial and algal community structure of BSCs in coastal dunes.

  9. Exploring the Utilization of Complex Algal Communities to Address Algal Pond Crash and Increase Annual Biomass Production for Algal Biofuels

    SciTech Connect

    Hamilton, Cyd E.

    2014-03-25

    This white paper briefly reviews the research literature exploring complex algal communities as a means of increasing algal biomass production via increased tolerance, resilience, and resistance to a variety of abiotic and biotic perturbations occurring within harvesting timescales. This paper identifies what data are available and whether more research utilizing complex communities is needed to explore the potential of complex algal community stability (CACS) approach as a plausible means to increase biomass yields regardless of ecological context and resulting in decreased algal-based fuel prices by reducing operations costs. By reviewing the literature for what we do and do not know, in terms of CACS methodologies, this report will provide guidance for future research addressing pond crash phenomena.

  10. Species composition of grasshoppers (Orthoptera) in open plots and farmlands in calabar metropolis, southern Nigeria.

    PubMed

    Oku, E E; Arong, G A; Bassey, D A

    2011-04-15

    The grasshoppers are strategic in the welfare of man and may constitute a major threat when its population is not checked. A study on the distribution of grasshoppers in open plots and farmlands was carried out within Calabar Metropolis between August to November, 2010. A total of 295 grasshoppers belonging to 11 species grouped under 3 families (Tettigoniidae, Acrididae and Pyrgomorphidae) were collected from 8 study locations. Grasshoppers were collected weekly from all study sites using sweep nets between 11 a.m. to 4 p.m. The collection was done using sweep nets between 11 a.m. to 4 p.m. when grasshoppers baked themselves under the sun. The percentage abundance of these species were Spathosterrium pygmaeum (16.27%), Tettigonia viridissima (11.86%), Catantops spissus (11.19%) Acridaturita sp. (10.17%), Gastrimargus acrididae (9.83%), Schistocerca nitens (9.49%), Tylopsis sp. (7.46%), Zonocerus variegatus (6.78%), Omocestus viridulus (6.10%), Scudderia mexicana (5.76%) and Zonocerus elegans (5.08%). Tettigonia viridissima and Acridaturita sp. were largely distributed as it occurred in 7 of 8 study sites while Scudderia mexicana was the least distributed, as it was reported in 3 sites only. The dominant grasshopper species in open plot was Spathosterrium pygmaeum (19%) in relative abundance and the least was Zonocerus variegatus (0.64%). Zonocerus variegatus was the dominant species in farmland (14%) in relative abundance and the least was Schistocerca nitens (4%). Chi-square test showed a high significant difference between the distribution of grasshoppers in open plots and farmlands (p < 0.05). Variations in grasshopper species composition were attributed to lizard predation and management practices such as grass cutting, fertilizer and pesticide applications. It was therefore concluded that species abundance and population of grasshoppers could be enhanced by minimizing human activities that interfere with land use.

  11. Prospects for quantifying structure, floristic composition and species richness of tropical forests

    USGS Publications Warehouse

    Gillespie, T.W.; Brock, J.; Wright, C.W.

    2004-01-01

    Airborne spectral and light detection and ranging (lidar) sensors have been used to quantify biophysical characteristics of tropical forests. Lidar sensors have provided high-resolution data on forest height, canopy topography, volume, and gap size; and provided estimates on number of strata in a forest, successional status of forests, and above-ground biomass. Spectral sensors have provided data on vegetation types, foliar biochemistry content of forest canopies, tree and canopy phenology, and spectral signatures for selected tree species. A number of advances are theoretically possible with individual and combined spectral and lidar sensors for the study of forest structure, floristic composition and species richness. Delineating individual canopies of over-storey trees with small footprint lidar and discrimination of tree architectural types with waveform distributions is possible and would provide scientists with a new method to study tropical forest structure. Combined spectral and lidar data can be used to identify selected tree species and identify the successional status of tropical forest fragments in order to rank forest patches by levels of species richness. It should be possible in the near future to quantify selected patterns of tropical forests at a higher resolution than can currently be undertaken in the field or from space. ?? 2004 Taylor and Francis Ltd.

  12. Expected shifts in Fusarium species' composition on cereal grain in Northern Europe due to climatic change.

    PubMed

    Parikka, P; Hakala, K; Tiilikkala, K

    2012-01-01

    In Northern Europe, changes in climate may result in better growing conditions for many crops. However, the expected warmer and more humid conditions are favourable for Fusarium head blight infections on cereals. The Fusarium species prevalent in Nordic areas to date are the same as in Central Europe: F. avenaceum, F. culmorum, F. graminearum and F. poae. The prevalence of F. graminearum in cereal grain has already increased in Central Europe and is likely to increase in the North due to the expected changes in weather conditions, reduced tillage and the predicted increase in maize cultivation in Nordic countries. The possible weather extremes predispose cereals to Fusarium infections by increasing the populations of insect pests injuring plants. Adverse conditions may even create conditions suitable for F. subglutinans or F. verticilloides to infect maize and possibly other cereals in rotation in southern parts of Scandinavia. The importance of the species that infect in relatively dry conditions, F. langsethiae and F. poae, may also increase on winter cereals which are predicted to be more prevalent in future farming. If the number of crop species cultivated will increase and non-cereal crops are included in rotations effects of reduced tillage on Fusarium infections in grain could be limited. The predicted changes in climate towards 2050 are expected to slightly change Fusarium species composition in Northern Europe. An increase in F. graminearum and possibly the invasion of northern parts of Central Europe and Denmark by fumonisin producers is expected.

  13. Anthropophilic Anopheles species composition and malaria in Tierradentro, Córdoba, Colombia

    PubMed Central

    Schiemann, David Joachim; Pinzón, Martha Lucía Quiñones; Hankeln, Thomas

    2014-01-01

    Malaria is still a primary health problem in Colombia. The locality of Tierradentro is situated in the municipality of Montelíbano, Córdoba, in the northwest of Colombia, and has one of the highest annual parasite index of malaria nationwide. However, the vectors involved in malaria transmission in this locality have not yet been identified. In this study, the local anthropophilic Anopheles composition and natural infectivity with Plasmodium were investigated. In August 2009, 927 female Anopheles mosquitoes were collected in eight localities using the human landing catch method and identified based on their morphology. Cryptic species were determined by restriction fragment length polymorphism-internal transcribed spacer (ITS)2 molecular analysis. Eight species [Anopheles nuneztovari s.l. (92.8%), Anopheles darlingi (5.1%), Anopheles triannulatus s.l. (1.8%), Anopheles pseudopunctipennis s.l. (0.2%), Anopheles punctimacula s.l. (0.2%), Anopheles apicimacula (0.1%), Anopheles albimanus (0.1%) and Anopheles rangeli (0.1%)] were identified and species identity was confirmed by ITS2 sequencing. This is the first report of An. albimanus, An. rangeli and An. apicimacula in Tierradentro. Natural infectivity with Plasmodium was determined by ELISA. None of the mosquitoes was infectious for Plasmodium. An. nuneztovari s.l. was the predominant species and is considered the primary malaria vector; An. darlingi and An. triannulatus s.l. could serve as secondary vectors.

  14. Anopheles species composition explains differences in Plasmodium transmission in La Guajira, northern Colombia.

    PubMed

    Herrera-Varela, Manuela; Orjuela, Lorena I; Peñalver, Cilia; Conn, Jan E; Quiñones, Martha L

    2014-11-01

    Malaria in La Guajira, the most northern state of Colombia, shows two different epidemiological patterns. Malaria is endemic in the municipality of Dibulla whereas in Riohacha it is characterised by sporadic outbreaks. This study aimed to establish whether differences in transmission patterns could be attributed to different vector species. The most abundant adult female species were Anopheles aquasalis, exclusive to Riohacha, and Anopheles darlingi, restricted to Dibulla. Anopheles mosquitoes were identified using morphology and the molecular markers internal transcribed spacer 2 and cytochrome c oxidase I. All specimens (n = 1,393) were tested by ELISA to determine natural infection rates with Plasmodium falciparum and Plasmodium vivax. An. darlingi was positive for P. vivax 210, with an infection rate of 0.355% and an entomological inoculation rate of 15.87 infective bites/person/year. Anopheles albimanus larvae were the most common species in Riohacha, found in temporary swamps; in contrast, in Dibulla An. darlingi were detected mainly in permanent streams. Distinctive species composition and larval habitats in each municipality may explain the differences in Plasmodium transmission and suggest different local strategies should be used for vector control.

  15. Anopheles species composition explains differences in Plasmodium transmission in La Guajira, northern Colombia

    PubMed Central

    Herrera-Varela, Manuela; Orjuela, Lorena I; Peñalver, Cilia; Conn, Jan E; Quiñones, Martha L

    2014-01-01

    Malaria in La Guajira, the most northern state of Colombia, shows two different epidemiological patterns. Malaria is endemic in the municipality of Dibulla whereas in Riohacha it is characterised by sporadic outbreaks. This study aimed to establish whether differences in transmission patterns could be attributed to different vector species. The most abundant adult female species were Anopheles aquasalis, exclusive to Riohacha, and Anopheles darlingi, restricted to Dibulla. Anopheles mosquitoes were identified using morphology and the molecular markers internal transcribed spacer 2 and cytochrome c oxidase I. All specimens (n = 1,393) were tested by ELISA to determine natural infection rates with Plasmodium falciparum and Plasmodium vivax. An. darlingi was positive for P. vivax 210, with an infection rate of 0.355% and an entomological inoculation rate of 15.87 infective bites/person/year. Anopheles albimanus larvae were the most common species in Riohacha, found in temporary swamps; in contrast, in Dibulla An. darlingi were detected mainly in permanent streams. Distinctive species composition and larval habitats in each municipality may explain the differences in Plasmodium transmission and suggest different local strategies should be used for vector control. PMID:25411002

  16. Direct and indirect effects of high pCO2 on algal grazing by coral reef herbivores from the Gulf of Aqaba (Red Sea)

    NASA Astrophysics Data System (ADS)

    Borell, E. M.; Steinke, M.; Fine, M.

    2013-12-01

    Grazing on marine macroalgae is a key structuring process for coral reef communities. However, ocean acidification from rising atmospheric CO2 concentrations is predicted to adversely affect many marine animals, while seaweed communities may benefit and prosper. We tested how exposure to different pCO2 (400, 1,800 and 4,000 μatm) may affect grazing on the green alga Ulva lactuca by herbivorous fish and sea urchins from the coral reefs in the northern Gulf of Aqaba (Red Sea), either directly, by changing herbivore behaviour, or indirectly via changes in algal palatability. We also determined the effects of pCO2 on algal tissue concentrations of protein and the grazing-deterrent secondary metabolite dimethylsulfoniopropionate (DMSP). Grazing preferences and overall consumption were tested in a series of multiple-choice feeding experiments in the laboratory and in situ following exposure for 14 d (algae) and 28 d (herbivores). 4,000 μatm had a significant effect on the biochemical composition and palatability of U. lactuca. No effects were observed at 1,800 relative to 400 μatm (control). Exposure of U. lactuca to 4,000 μatm resulted in a significant decrease in protein and increase in DMSP concentration. This coincided with a reduced preference for these algae by the sea urchin Tripneustes gratilla and different herbivorous fish species in situ (Acanthuridae, Siganidae and Pomacanthidae). No feeding preferences were observed for the rabbitfish Siganus rivulatus under laboratory conditions. Exposure to elevated pCO2 had no direct effect on the overall algal consumption by T. gratilla and S. rivulatus. Our results show that CO2 has the potential to alter algal palatability to different herbivores which could have important implications for algal abundance and coral community structure. The fact that pCO2 effects were observed only at a pCO2 of 4,000 μatm, however, indicates that algal-grazer interactions may be resistant to predicted pCO2 concentrations in the

  17. Bird and mammal species composition in distinct geographic regions and their relationships with environmental factors across multiple spatial scales.

    PubMed

    Kent, Rafi; Bar-Massada, Avi; Carmel, Yohay

    2014-05-01

    Global patters of species distributions and their underlying mechanisms are a major question in ecology, and the need for multi-scale analyses has been recognized. Previous studies recognized climate, topography, habitat heterogeneity and disturbance as important variables affecting such patterns. Here we report on analyses of species composition - environment relationships among different taxonomic groups in two continents, and the components of such relationships, in the contiguous USA and Australia. We used partial Canonical Correspondence Analysis of occurrence records of mammals and breeding birds from the Global Biodiversity Information Facility, to quantify relationships between species composition and environmental variables in remote geographic regions at multiple spatial scales, with extents ranging from 10(5) to 10(7) km(2) and sampling grids from 10 to 10,000 km(2). We evaluated the concept that two elements contribute to the impact of environmental variables on composition: the strength of species' affinity to an environmental variable, and the amount of variance in the variable. To disentangle these two elements, we analyzed correlations between resulting trends and the amount of variance contained in different environmental variables to isolate the mechanisms behind the observed relationships. We found that climate and land use-land cover are responsible for most explained variance in species composition, regardless of scale, taxonomic group and geographic region. However, the amount of variance in species composition attributed to land use / land cover (LULC) was closely related to the amount of intrinsic variability in LULC in the USA, but not in Australia, while the effect of climate on species composition was negatively correlated to the variability found in the climatic variables. The low variance in climate, compared to LULC, suggests that species in both taxonomic groups have strong affinity to climate, thus it has a strong effect on species

  18. The paradox of algal blooms in oligotrophic waters

    NASA Astrophysics Data System (ADS)

    Sundareshwar, P. V.; Upadhyay, S.; Abessa, M. B.; Honomichl, S.; Berdanier, B.; Spaulding, S.; Sandvik, C.; Trennepohl, A.

    2010-12-01

    Nutrient inputs to streams and lakes, primarily from anthropogenic sources, lead to eutrophic conditions that favor algal blooms with undesirable consequences. In contrast, low nutrient or oligotrophic waters rarely support algal blooms; such ecosystems are typically lower in productivity. Since the mid-1980’s however, the diatom Didymosphenia geminata has dramatically expanded its range colonizing oligotrophic rivers worldwide with blooms appearing as thick benthic mats. This recent global occurrence of Didymosphenia geminata blooms in temperate rivers has been perplexing in its pace of spread and the paradoxical nature of the nuisance growths. The blooms occur primarily in oligotrophic flowing waters, where phosphorus (P) availability often limits primary production. We present a biogeochemical process by which D. geminata mats adsorb both P and iron (Fe) from flowing waters and make P available for cellular uptake. The adsorbed P becomes bioavailable through biogeochemical processes that occur within the mat. The biogeochemical processes observed here while well accepted in benthic systems are novel for algal blooms in lotic habits. Enzymatic and bacterial processes such as Fe and sulfate reduction can release the adsorbed P and increase its bioavailability, creating a positive feedback between total stalk biomass and nutrient availability. Stalk affinity for Fe, Fe-P biogeochemistry, and interaction between watershed processes and climatic setting explain the paradoxical blooms, and the recent global spread of this invasive aquatic species. At a broader scale the study also implies that such algal blooms in oligotrophic environments can fundamentally alter the retention and longitudinal transfer of important nutrients such as P in streams and rivers.

  19. Evaluating algal growth performance and water use efficiency of pilot-scale revolving algal biofilm (RAB) culture systems.

    PubMed

    Gross, Martin; Mascarenhas, Vernon; Wen, Zhiyou

    2015-10-01

    A Revolving Algal Biofilm (RAB) growth system in which algal cells are attached to a flexible material rotating between liquid and gas phases has been developed. In this work, different configurations of RAB systems were developed at pilot-scale by retrofitting the attachment materials to a raceway pond (2000-L with 8.5 m(2) footprint area) and a trough reservoir (150 L with 3.5 m(2) footprint area). The algal growth performance and chemical composition, as well as the water evaporative loss and specific water consumption were evaluated over a period of nine months in a greenhouse environment near Boone, Iowa USA. Additionally a raceway pond was run in parallel, which served as a control. On average the raceway-based RAB and the trough-based RAB outperformed the control pond by 309% and 697%, respectively. A maximum productivity of 46.8 g m(-2) day(-1) was achieved on the trough-based RAB system. The evaporative water loss of the RAB system was modeled based on an energy balance analysis and was experimentally validated. While the RAB system, particularly the trough-based RAB, had higher water evaporative loss, the specific water consumption per unit of biomass produced was only 26% (raceway-based RAB) and 7% (trough-based RAB) of that of the control pond. Collectively, this research shows that the RAB system is an efficient algal culture system and has great potential to commercially produce microalgae with high productivity and efficient water use.

  20. Copper removal by algal biomass: biosorbents characterization and equilibrium modelling.

    PubMed

    Vilar, Vítor J P; Botelho, Cidália M S; Pinheiro, José P S; Domingos, Rute F; Boaventura, Rui A R

    2009-04-30

    The general principles of Cu(II) binding to algal waste from agar extraction, composite material and algae Gelidium, and different modelling approaches, are discussed. FTIR analyses provided a detailed description of the possible binding groups present in the biosorbents, as carboxylic groups (D-glucuronic and pyruvic acids), hydroxyl groups (cellulose, agar and floridean starch) and sulfonate groups (sulphated galactans). Potentiometric acid-base titrations showed a heterogeneous distribution of two major binding groups, carboxyl and hydroxyl, following the quasi-Gaussian affinity constant distribution suggested by Sips, which permitted to estimate the maximum amount of acid functional groups (0.36, 0.25 and 0.1 mmol g(-1)) and proton binding parameters (pK(H)=5.0, 5.3 and 4.4; m(H)=0.43, 0.37, 0.33), respectively for algae Gelidium, algal waste and composite material. A non-ideal, semi-empirical, thermodynamically consistent (NICCA) isotherm fitted better the experimental ion binding data for different pH values and copper concentrations, considering only the acid functional groups, than the discrete model. Values of pK(M) (3.2; 3.6 and 3.3), n(M) (0.98, 0.91, 1.0) and p (0.67, 0.53 and 0.43) were obtained, respectively for algae Gelidium, algal waste and composite material. NICCA model reflects the complex macromolecular systems that take part in biosorption considering the heterogeneity of the biosorbent, the competition between protons and metals ions to the binding sites and the stoichiometry for different ions.

  1. Planococcus rifietensis sp. nov, isolated from algal mat collected from a sulfurous spring in Campania (Italy).

    PubMed

    Romano, Ida; Giordano, Assunta; Lama, Licia; Nicolaus, Barbara; Gambacorta, Agata

    2003-09-01

    The taxomony of strain M8, isolated from algal mat formed at the origin of a sulfurous spring in Rifieto (Savignano Irpino, Campania, Italy), was investigated in a polyphasic approach. The morphological, physiological and genetic characteristics were compared with of Planococcus and Planomicrobium species. The isolate grew optimally at pH 9.0, 1.8 M NaCl at 37 degrees C. The cells were Gram-positive cocci that form pairs, tetrads and aggregates of several cells. The isolate was aerobic/microaerophilic and accumulated glycine-betaine, as a major osmolyte, with minor components glutamate and an unknown compound. M8 was able to hydrolyse X-Glc (5-bromo-4-chloro-3-indoyl beta-d-glucopyranoside). The polar lipid profile consisted of phosphatidylglycerol and diphosphatidylglycerol as major components, and phosphocholine as a minor compound. MK8 was the only quinone found and the fatty acid composition was dominated by branched acids, mainly aiC15:0. The G+C content of DNA was 47.9% and its phylogenetic position was established by 16S rRNA gene sequencing as a member of the genus Planococcus. The DNA/DNA similarity of M8 to the type species Planococcus citreus was less than 55%. For this reason and for physiological and chemotaxonomic features, it is proposed to create a new species Planococcus rifietensis sp. nov.

  2. Characteristics of algal succession following rock scraping at Imwon area in the east coast of Korea

    NASA Astrophysics Data System (ADS)

    Kim, Young Dae; Ahn, Jung Kwan; Nam, Myung Mo; Lee, Chu; Yoo, Hyun Il; Yeon, Su Yeoung; Kim, Young Hwan; Kim, Jang Kyun; Choi, Jae Suk

    2016-12-01

    This study was conducted to clarify the characteristics of algal succession following rock scraping using hoe or high-pressure water sprayer in the period from June 2010 to April 2011. We divided the research area off the eastern coast of Korean near Imwon into 3 categories depending upon the severity of the barren ground, i.e., the urchin barren-affected, urchin barren-ongoing and urchin barren-free areas. In April 2011, in the urchin barren-affected area with 25 seaweed species, the cover percentage and importance value (IV) of crustose coralline algae were higher than those of other species. In the urchin barren-ongoing area with 33 seaweed species, crustose coralline algae (mean IV = 62%) as well as Sargassum sp. (mean IV = 28%), and Gelidium amansii (mean IV = 19%) were observed following rock scraping. In the urchin barren-free area where seaweed communities were relatively abundant with 42 species, a variety of algal species including G. amansii (mean IV = 32%) underwent algal succession. Overall, it was observed that, as an aspect of algal succession, the weaker the barren ground severity was, the more frequent and diverse the seaweeds were, and the more complex the succession pattern was in the study. As an aspect of recovering algal community, rock scraping using hoe was shown to be superior to the method using high-pressure water spraying. Therefore, we conclude that rock scraping using hoe is a very effective strategy for recovering the algal community in urchin barren-ongoing area.

  3. Microbial communities mediating algal detritus turnover under anaerobic conditions

    PubMed Central

    Morrison, Jessica M.; Murphy, Chelsea L.; Baker, Kristina; Zamor, Richard M.; Nikolai, Steve J.; Wilder, Shawn; Elshahed, Mostafa S.

    2017-01-01

    Background Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various algal species have been touted as promising candidates for anaerobic biogas production from biomass. Surprisingly, in spite of its ecological and economic relevance, the microbial community involved in algal detritus turnover under anaerobic conditions remains largely unexplored. Results Here, we characterized the microbial communities mediating the degradation of Chlorella vulgaris (Chlorophyta), Chara sp. strain IWP1 (Charophyceae), and kelp Ascophyllum nodosum (phylum Phaeophyceae), using sediments from an anaerobic spring (Zodlteone spring, OK; ZDT), sludge from a secondary digester in a local wastewater treatment plant (Stillwater, OK; WWT), and deeper anoxic layers from a seasonally stratified lake (Grand Lake O’ the Cherokees, OK; GL) as inoculum sources. Within all enrichments, the majority of algal biomass was metabolized within 13–16 weeks, and the process was accompanied by an increase in cell numbers and a decrease in community diversity. Community surveys based on the V4 region of the 16S rRNA gene identified different lineages belonging to the phyla Bacteroidetes, Proteobacteria (alpha, delta, gamma, and epsilon classes), Spirochaetes, and Firmicutes that were selectively abundant under various substrate and inoculum conditions. Within all kelp enrichments, the microbial communities structures at the conclusion of the experiment were highly similar regardless of the enrichment source, and were dominated by the genus Clostridium, or family Veillonellaceae within the Firmicutes. In all other enrichments the final microbial community was dependent on the inoculum source, rather than the type of algae utilized as substrate. Lineages enriched

  4. Substratum preference of two species of Xanthoparmelia.

    PubMed

    Deduke, Chris; Piercey-Normore, Michele D

    2015-09-01

    The distribution of established saxicolous lichens has been previously studied but substratum preference and elemental composition has been relatively unexplored. The objectives of this study were to compare ascospore germination and growth for two species of Xanthoparmelia using media supplemented with pulverized rock and to explore photobiont selectivity relative to ecological guilds. Mature apothecia from X. cumberlandia and X. viriduloumbrina were subjected to five treatments, which include water agar supplemented with crushed granodiorite, basalt, mica schist, dolostone, and malt yeast agar as the control. The algal actin gene was sequenced and the closest algal matches were retrieved from GenBank and analysed to produce a haplotype network. X. cumberlandia exhibited substratum preference for the mica schist treatment, while X. viriduloumbrina grew better on granodiorite and malt yeast agar relative to dolostone. Ascospore germination for both species failed to progress beyond the initial swelling and protrusion stage on the dolostone treatment. The actin gene sequences for the algae were most similar to those of Trebouxia jamesii. The rock substrates did not correspond with the photobiont haplotypes, which does not support the ecological guild hypothesis. This study provided insights into substratum preference and the suitability of the substratum for algal selection.

  5. Genome size and base composition of five Pinus species from the Balkan region.

    PubMed

    Bogunic, F; Muratovic, E; Brown, S C; Siljak-Yakovlev, S

    2003-08-01

    The 2C DNA content and base composition of five Pinus (2 n=24) species and two Pinus subspecies from the Balkan region have been estimated by flow cytometry. P. heldreichii (five populations) and P. peuce (one population) were assessed for the first time, as also were subspecies of P. nigra (three populations-two of subspecies nigra and one of subspecies dalmatica) along with P. sylvestris, and P. mugo from the same region. The 2C DNA values of these Pinus ranged from 42.5 pg to 54.9 pg (41.7-53.8 x 10(9)bp), and the base composition was quite stable (about 39.5% GC). Significant differences were observed between two subspecies of P. nigra and even between two populations of subsp. nigra. The two other species (P. sylvestris and P. mugo) had 2C values of 42.5 pg and 42.8 pg, respectively, while that of P. peuce was 54.9 pg. These genome sizes are in accordance with published values except for P. sylvestris, which was 20% below estimates made by other authors.

  6. Natural Chemical Composition of Commercial Fish Species: Characterisation of Pangasius, Wild and Farmed Turbot and Barramundi

    PubMed Central

    Manthey-Karl, Monika; Lehmann, Ines; Ostermeyer, Ute; Schröder, Ute

    2016-01-01

    To comply with the relevant legal requirements and correct labelling, it is necessary for business operators and inspection authorities to know the natural characteristics of the raw material. This study gives a comprehensive overview of muscle flesh composition of farmed and wild Atlantic turbot (Scophthalmus maximus) and barramundi (Lates calcarifer) and of farmed pangasius (Pangasianodon hypophthalmus). The proximate composition, di- and triphosphates and citric acid values are presented in order to evaluate possible indicators for a hidden treatment during processing to fillets. All moisture contents were ≤80%. Even for pangasius, protein values for deep skinned fillets of ≥18% were determined. Only small quantities of naturally occurring citric acid (up to 0.03 g·kg−1) were detectable. The lipid content was the most varying main component within the different species, ranging between 1.2% to 2.0% and 0.3% to 3.0% for farmed turbot and barramundi, respectively. Pangasius flesh had a mean lipid content of 7.8%. Trimming and separation of the red layer reduced the lipid content of the commercially sold white-flesh fillets to 2.7% to 3.5%. Fatty acids profiles, free amino acids, and minerals were analysed to show the nutritional quality of the aquaculture fish species and compared to wild turbot and barramundi. Despite some natural variation, these components can be considered as comparable. PMID:28231154

  7. Natural Chemical Composition of Commercial Fish Species: Characterisation of Pangasius, Wild and Farmed Turbot and Barramundi.

    PubMed

    Manthey-Karl, Monika; Lehmann, Ines; Ostermeyer, Ute; Schröder, Ute

    2016-08-30

    To comply with the relevant legal requirements and correct labelling, it is necessary for business operators and inspection authorities to know the natural characteristics of the raw material. This study gives a comprehensive overview of muscle flesh composition of farmed and wild Atlantic turbot (Scophthalmus maximus) and barramundi (Lates calcarifer) and of farmed pangasius (Pangasianodon hypophthalmus). The proximate composition, di- and triphosphates and citric acid values are presented in order to evaluate possible indicators for a hidden treatment during processing to fillets. All moisture contents were ≤80%. Even for pangasius, protein values for deep skinned fillets of ≥18% were determined. Only small quantities of naturally occurring citric acid (up to 0.03 g·kg(-1)) were detectable. The lipid content was the most varying main component within the different species, ranging between 1.2% to 2.0% and 0.3% to 3.0% for farmed turbot and barramundi, respectively. Pangasius flesh had a mean lipid content of 7.8%. Trimming and separation of the red layer reduced the lipid content of the commercially sold white-flesh fillets to 2.7% to 3.5%. Fatty acids profiles, free amino acids, and minerals were analysed to show the nutritional quality of the aquaculture fish species and compared to wild turbot and barramundi. Despite some natural variation, these components can be considered as comparable.

  8. Comparative study of pyrolysis of algal biomass from natural lake blooms with lignocellulosic biomass.

    PubMed

    Maddi, Balakrishna; Viamajala, Sridhar; Varanasi, Sasidhar

    2011-12-01

    Pyrolysis experiments were performed with algal and lignocellulosic feedstocks under similar reactor conditions for comparison of product (bio-oil, gas and bio-char) yields and composition. In spite of major differences in component bio-polymers, feedstock properties relevant to thermo-chemical conversions, such as overall C, H and O-content, C/O and H/C molar ratio as well as calorific values, were found to be similar for algae and lignocellulosic material. Bio-oil yields from algae and some lignocellulosic materials were similar; however, algal bio-oils were compositionally different and contained several N-compounds (most likely from protein degradation). Algal bio-char also had a significantly higher N-content. Overall, our results suggest that it is feasible to convert algal cultures deficient in lipids, such as nuisance algae obtained from natural blooms, into liquid fuels by thermochemical methods. As such, pyrolysis technologies being developed for lignocellulosic biomass may be directly applicable to algal feedstocks as well.

  9. Plant species composition alters the sign and strength of an emergent multi-predator effect by modifying predator foraging behaviour.

    PubMed

    Wilby, Andrew; Anglin, Linda Anderson; Nesbit, Christopher M

    2013-01-01

    The prediction of pest-control functioning by multi-predator communities is hindered by the non-additive nature of species functioning. Such non-additivity, commonly termed an emergent multi-predator effect, is known to be affected by elements of the ecological context, such as the structure and composition of vegetation, in addition to the traits of the predators themselves. Here we report mesocosm experiments designed to test the influence of plant density and species composition (wheat monoculture or wheat and faba bean polyculture) on the emergence of multi-predator effects between Adalia bipunctata and Chrysoperla carnea, in their suppression of populations of the aphid Metopolophium dirhodum. The mesocosm experiments were followed by a series of behavioural observations designed to identify how interactions among predators are modified by plant species composition and whether these effects are consistent with the observed influence of plant species composition on aphid population suppression. Although plant density was shown to have no influence on the multi-predator effect on aphid population growth, plant composition had a marked effect. In wheat monoculture, Adalia and Chrysoperla mixed treatments caused greater suppression of M. dirhodum populations than expected. However this positive emergent effect was reversed to a negative multi-predator effect in wheat and faba bean polyculture. The behavioural observations revealed that although dominant individuals did not respond to the presence of faba bean plants, the behaviour of sub-dominants was affected markedly, consistent with their foraging for extra-floral nectar produced by the faba bean. This interaction between plant composition and predator community composition on the foraging behaviour of sub-dominants is thought to underlie the observed effect of plant composition on the multi-predator effect. Thus, the emergence of multi-predator effects is shown to be strongly influenced by plant species

  10. Retention of Anionic Species on Granite: Influence of Granite Composition - 12129

    SciTech Connect

    Videnska, Katerina; Havlova, Vaclava

    2012-07-01

    Technetium (Tc-99, T{sub 1/2} = 2.1.10{sup 5} yrs) and selenium (Se-79, T{sub 1/2} = 6.5.10{sup 4} yrs) belong among fission products, being produced by fission of nuclear fuel. Both elements can significantly contribute to risk due to their complicated chemistry, long life times, high mobility and prevailing anionic character. Therefore, knowledge of migration behaviour under different conditions can significantly improve input into performance and safety assessment models. Granite is considered as a potential host rock for deep geological disposal of radioactive waste in many countries. Granitic rocks consist usually of quartz, feldspar, plagioclase (main components), mica, chlorite, kaolinite (minor components). The main feature of the rock is advection governed transport in fractures, complemented with diffusion process from fracture towards undisturbed rock matrix. The presented work is focused on interaction of anionic species (TcO{sub 4}{sup -}, SeO{sub 4}{sup 2-}, SeO{sub 3}{sup 2-}) with granitic rock. Furthermore, the importance of mineral composition on sorption of anionic species was also studied. The batch sorption experiments were conducted on the crushed granite from Bohemian Massive. Five fractions with defined grain size were used for static batch method. Mineral composition of each granitic fraction was evaluated using X-ray diffraction. The results showed differences in composition of granitic fractions, even though originating from one homogenized material. Sorption experiments showed influence of granite composition on adsorption of both TcO4{sup -} and SeO3{sup 2-} on granitic rock. Generally, Se(IV) showed higher retention than Tc(VII). Se(VI) was not almost sorbed at all. Fe containing minerals are pronounced as a selective Se and Tc sorbent, being reduced on their surface. As micas in granite are usually enriched in Fe, increased sorption of anionic species onto mica enriched fractions can be explained by this reason. On the other hand

  11. High Frequency Monitoring for Harmful Algal Blooms

    EPA Science Inventory

    Harmful algal blooms (HABs) are increasingly becoming a significant ecologic, economic, and social driver in the use of water resources. Cyanobacteria and their toxins play an important role in management decisions for drinking water utilities and public health officials. Online ...

  12. Factsheet: Climate Change and Harmful Algal Blooms

    EPA Pesticide Factsheets

    Climate change is predicted to change many environmental conditions that could affect the properties of fresh and marine waters. These changes could favor the growth of harmful algal blooms and habitat changes.

  13. Environmental performance of algal biofuel technology options.

    PubMed

    Vasudevan, Venkatesh; Stratton, Russell W; Pearlson, Matthew N; Jersey, Gilbert R; Beyene, Abraham G; Weissman, Joseph C; Rubino, Michele; Hileman, James I

    2012-02-21

    Considerable research and development is underway to produce fuels from microalgae, one of several options being explored for increasing transportation fuel supplies and mitigating greenhouse gas emissions (GHG). This work models life-cycle GHG and on-site freshwater consumption for algal biofuels over a wide technology space, spanning both near- and long-term options. The environmental performance of algal biofuel production can vary considerably and is influenced by engineering, biological, siting, and land-use considerations. We have examined these considerations for open pond systems, to identify variables that have a strong influence on GHG and freshwater consumption. We conclude that algal biofuels can yield GHG reductions relative to fossil and other biobased fuels with the use of appropriate technology options. Further, freshwater consumption for algal biofuels produced using saline pond systems can be comparable to that of petroleum-derived fuels.

  14. Climate Adaptation and Harmful Algal Blooms

    EPA Pesticide Factsheets

    EPA supports local, state and tribal efforts to maintain water quality. A key element of its efforts is to reduce excess nutrient pollution and the resulting adverse impacts, including harmful algal blooms.

  15. Recent Advances in Algal Genetic Tool Development

    SciTech Connect

    R. Dahlin, Lukas; T. Guarnieri, Michael

    2016-06-24

    The goal of achieving cost-effective biofuels and bioproducts derived from algal biomass will require improvements along the entire value chain, including identification of robust, high-productivity strains and development of advanced genetic tools. Though there have been modest advances in development of genetic systems for the model alga Chlamydomonas reinhardtii, progress in development of algal genetic tools, especially as applied to non-model algae, has generally lagged behind that of more commonly utilized laboratory and industrial microbes. This is in part due to the complex organellar structure of algae, including robust cell walls and intricate compartmentalization of target loci, as well as prevalent gene silencing mechanisms, which hinder facile utilization of conventional genetic engineering tools and methodologies. However, recent progress in global tool development has opened the door for implementation of strain-engineering strategies in industrially-relevant algal strains. Here, we review recent advances in algal genetic tool development and applications in eukaryotic microalgae.

  16. Assessment of fish abundance and species composition at selected sites in South Dakota: an overview

    USGS Publications Warehouse

    Harwood, Alison

    2010-01-01

    The U.S. Geological Survey (USGS) conducted surveys of streams throughout the State of South Dakota during 2008-09 as part of the U.S. Environmental Protection Agency?s (USEPA) National Rivers and Streams Assessment (NRSA) Program. During 2008-09, as part of the stream assessment, the USGS completed surveys of fish populations and species composition at 64 sites. Fish were inventoried at 60 of the 64 sites, but not at four of the sites because water was too low to sustain fish or specific conductivity was too high to electroshock effectively. Four of the sites were surveyed in 2000-04 during the USEPA's Environmental Monitoring and Assessment Program-West (EMAP-West) project. Two wadeable sites and two boatable sites were revisited for quality-assurance/quality-control requirements. During the study, both wadeable and boatable streams were sampled using electrofishing equipment and methods. Of the 64 sites, 62 were wadeable and 2 were boatable. Procedures for sampling wadeable streams differed slightly from procedures for boatable streams. Backpack electrofishing equipment was used for wadeable streams, whereas boat electrofishing equipment was used for boatable streams. Wadeable streams also were fished in an opposite direction than boatable streams. Several species of fish were collected during the NRSA. Species diversity ranged from 0-11 species in wadeable streams and from 6-26 species in boatable streams. Many common species were sampled during the study. The most frequently sampled fish was the sand shiner (Notropis stramineus), with 609 individuals sampled. In contrast, only one heritage species, the skipjack herring (Alosa chrysochloris), was identified during 2008-09. Common anomalies found in fish caught were parasitic lesions, "black spot disease," and tumors. When comparing the fish sampling results for the four sites visited in both 2000-04 and in 2008-09, more individuals and species were collected during 2008-09 than in 2000-04 at two sites, whereas

  17. Changes in Phlebotomine Sand Fly Species Composition Following Insecticide Thermal Fogging in a Rural Setting of Western Panamá

    PubMed Central

    Calzada, Jose E.; Saldaña, Azael; Rigg, Chystrie; Valderrama, Anayansi; Romero, Luz; Chaves, Luis Fernando

    2013-01-01

    American Cutaneous Leishmaniasis, ACL, is a zoonotic disease with a large richness of co-occurring vector species in transmission foci. Here, we describe changes in patterns of phlebotomine sand fly (Diptera: Psychodidae: Phlebotominae) species composition at the village of Trinidad de Las Minas, Capira, Panamá, a hyperendemic focus of ACL transmission, subjected to a vector control intervention with insecticide thermal fogging (ITF). Our study setting consisted of 24 houses, 12 subjected to two rounds of ITF and 12 kept as control. During 15 months (April 2010– June 2011) we monitored sand fly species composition and abundance with modified HP light traps inside (domicile) and outside (peridomicile) the studied houses. From 5628 sand flies collected, we were able to identify 5617 of the samples into 24 species, a number of species close to 25±1.6, the estimate from the Chao2 Index. The most abundant species were Lutzomya trapidoi (20%), Lu. gomezi (20%) and Lu. triramula (20%). Cluster analyses showed that most of the 24 houses had high similarity in relative abundance patterns of the six most common species, with only few peripheral houses not following the main cluster pattern. We also found that species richness was decreased to 22 species in the fogged houses, of which only 19 were found in the domiciliary environment. Changes in species richness were especially notorious at the end of the wet season. Our results suggest that species richness can decrease following ITF in domiciliary environments, primarily affecting the less common species. PMID:23536748

  18. Bryophyte species richness and composition along an altitudinal gradient in Gongga Mountain, China.

    PubMed

    Sun, Shou-Qin; Wu, Yan-Hong; Wang, Gen-Xu; Zhou, Jun; Yu, Dong; Bing, Hai-Jian; Luo, Ji

    2013-01-01

    An investigation of terrestrial bryophyte species diversity and community structure along an altitudinal gradient from 2,001 to 4,221 m a.s.l. in Gongga Mountain in Sichuan, China was carried out in June 2010. Factors which might affect bryophyte species composition and diversity, including climate, elevation, slope, depth of litter, vegetation type, soil pH and soil Eh, were examined to understand the altitudinal feature of bryophyte distribution. A total of 14 representative elevations were chosen along an altitudinal gradient, with study sites at each elevation chosen according to habitat type (forests, grasslands) and accessibility. At each elevation, three 100 m × 2 m transects that are 50 m apart were set along the contour line, and three 50 cm × 50 cm quadrats were set along each transect at an interval of 30 m. Species diversity, cover, biomass, and thickness of terrestrial bryophytes were examined. A total of 165 species, including 42 liverworts and 123 mosses, are recorded in Gongga mountain. Ground bryophyte species richness does not show any clear elevation trend. The terrestrial bryophyte cover increases with elevation. The terrestrial bryophyte biomass and thickness display a clear humped relationship with the elevation, with the maximum around 3,758 m. At this altitude, biomass is 700.3 g m(-2) and the maximum thickness is 8 cm. Bryophyte distribution is primarily associated with the depth of litter, the air temperature and the precipitation. Further studies are necessary to include other epiphytes types and vascular vegetation in a larger altitudinal range.

  19. Bryophyte Species Richness and Composition along an Altitudinal Gradient in Gongga Mountain, China

    PubMed Central

    Sun, Shou-Qin; Wu, Yan-Hong; Wang, Gen-Xu; Zhou, Jun; Yu, Dong; Bing, Hai-Jian; Luo, Ji

    2013-01-01

    An investigation of terrestrial bryophyte species diversity and community structure along an altitudinal gradient from 2,001 to 4,221 m a.s.l. in Gongga Mountain in Sichuan, China was carried out in June 2010. Factors which might affect bryophyte species composition and diversity, including climate, elevation, slope, depth of litter, vegetation type, soil pH and soil Eh, were examined to understand the altitudinal feature of bryophyte distribution. A total of 14 representative elevations were chosen along an altitudinal gradient, with study sites at each elevation chosen according to habitat type (forests, grasslands) and accessibility. At each elevation, three 100 m × 2 m transects that are 50 m apart were set along the contour line, and three 50 cm × 50 cm quadrats were set along each transect at an interval of 30 m. Species diversity, cover, biomass, and thickness of terrestrial bryophytes were examined. A total of 165 species, including 42 liverworts and 123 mosses, are recorded in Gongga mountain. Ground bryophyte species richness does not show any clear elevation trend. The terrestrial bryophyte cover increases with elevation. The terrestrial bryophyte biomass and thickness display a clear humped relationship with the elevation, with the maximum around 3,758 m. At this altitude, biomass is 700.3 g m−2 and the maximum thickness is 8 cm. Bryophyte distribution is primarily associated with the depth of litter, the air temperature and the precipitation. Further studies are necessary to include other epiphytes types and vascular vegetation in a larger altitudinal range. PMID:23472146

  20. Acceleration and novelty: community restoration speeds recovery and transforms species composition in Andean cloud forest.

    PubMed

    Wilson, Sarah Jane; Rhemtulla, Jeanine M

    2016-01-01

    Community-based tropical forest restoration projects, often promoted as a win-win solution for local communities and the environment, have increased dramatically in number in the past decade. Many such projects are underway in Andean cloud forests, which, given their extremely high biodiversity and history of extensive clearing, are understudied. This study investigates the efficacy of community-based tree-planting projects to accelerate cloud forest recovery, as compared to unassisted natural regeneration. This study takes place in northwest Andean Ecuador, where the majority of the original, highly diverse cloud forests have been cleared, in five communities that initiated tree-planting projects to restore forests in 2003. In 2011, we identified tree species along transects in planted forests (n = 5), naturally regenerating forests (n = 5), and primary forests (n = 5). We also surveyed 120 households about their restoration methods, tree preferences, and forest uses. We found that tree diversity was higher in planted than in unplanted secondary forest, but both were less diverse than primary forests. Ordination analysis showed that all three forests had distinct species compositions, although planted forests shared more species with primary forests than did unplanted forests. Planted forests also contained more animal-dispersed species in both the planted canopy and in the unplanted, regenerating understory than unplanted forests, and contained the highest proportion of species with use value for local people. While restoring forest increased biodiversity and accelerated forest recovery, restored forests may also represent novel ecosystems that are distinct from the region's previous ecosystems and, given their usefulness to people, are likely to be more common in the future.

  1. Remote Sensing Marine Ecology: Wind-driven algal blooms in the open oceans and their ecological impacts

    NASA Astrophysics Data System (ADS)

    Tang, DanLing

    2016-07-01

    Algal bloom not only can increase the primary production but also could result in negative ecological consequence, e.g., Harmful Algal Blooms (HABs). According to the classic theory for the formation of algal blooms "critical depth" and "eutrophication", oligotrophic sea area is usually difficult to form a large area of algal blooms, and actually the traditional observation is only sporadic capture to the existence of algal blooms. Taking full advantage of multiple data of satellite remote sensing, this study: 1), introduces "Wind-driven algal blooms in open oceans: observation and mechanisms" It explained except classic coastal Ekman transport, the wind through a variety of mechanisms affecting the formation of algal blooms. Proposed a conceptual model of "Strong wind -upwelling-nutrient-phytoplankton blooms" in Western South China Sea (SCS) to assess role of wind-induced advection transport in phytoplankton bloom formation. It illustrates the nutrient resources that support long-term offshore phytoplankton blooms in the western SCS; 2), Proposal of the theory that "typhoons cause vertical mixing, induce phytoplankton blooms", and quantify their important contribution to marine primary production; Proposal a new ecological index for typhoon. Proposed remote sensing inversion models. 3), Finding of the spatial and temporaldistributions pattern of harmful algal bloom (HAB)and species variations of HAB in the South Yellow Sea and East China Sea, and in the Pearl River estuary, and their oceanic dynamic mechanisms related with monsoon; The project developed new techniques and generated new knowledge, which significantly improved understanding of the formation mechanisms of algal blooms. 1), It proposed "wind-pump" mechanism integrates theoretical system combing "ocean dynamics, development of algal blooms, and impact on primary production", which will benefit fisheries management. 2), A new interdisciplinary subject "Remote Sensing Marine Ecology"(RSME) has been

  2. Direct conversion of algal biomass to biofuel

    DOEpatents

    Deng, Shuguang; Patil, Prafulla D; Gude, Veera Gnaneswar

    2014-10-14

    A method and system for providing direct conversion of algal biomass. Optionally, the method and system can be used to directly convert dry algal biomass to biodiesels under microwave irradiation by combining the reaction and combining steps. Alternatively, wet algae can be directly processed and converted to fatty acid methyl esters, which have the major components of biodiesels, by reacting with methanol at predetermined pressure and temperature ranges.

  3. Assessing Historical Fish Community Composition Using Surveys, Historical Collection Data, and Species Distribution Models

    PubMed Central

    Labay, Ben; Cohen, Adam E.; Sissel, Blake; Hendrickson, Dean A.; Martin, F. Douglas; Sarkar, Sahotra

    2011-01-01

    Accurate establishment of baseline conditions is critical to successful management and habitat restoration. We demonstrate the ability to robustly estimate historical fish community composition and assess the current status of the urbanized Barton Creek watershed in central Texas, U.S.A. Fish species were surveyed in 2008 and the resulting data compared to three sources of fish occurrence information: (i) historical records from a museum specimen database and literature searches; (ii) a nearly identical survey conducted 15 years earlier; and (iii) a modeled historical community constructed with species distribution models (SDMs). This holistic approach, and especially the application of SDMs, allowed us to discover that the fish community in Barton Creek was more diverse than the historical data and survey methods alone indicated. Sixteen native species with high modeled probability of occurrence within the watershed were not found in the 2008 survey, seven of these were not found in either survey or in any of the historical collection records. Our approach allowed us to more rigorously establish the true baseline for the pre-development fish fauna and then to more accurately assess trends and develop hypotheses regarding factors driving current fish community composition to better inform management decisions and future restoration efforts. Smaller, urbanized freshwater systems, like Barton Creek, typically have a relatively poor historical biodiversity inventory coupled with long histories of alteration, and thus there is a propensity for land managers and researchers to apply inaccurate baseline standards. Our methods provide a way around that limitation by using SDMs derived from larger and richer biodiversity databases of a broader geographic scope. Broadly applied, we propose that this technique has potential to overcome limitations of popular bioassessment metrics (e.g., IBI) to become a versatile and robust management tool for determining status of

  4. A bacterium capable of using phytol as its sole carbon source, isolated from algal sediment of Mud Lake, Florida.

    PubMed

    Hoag, K B; Bradley, W H; Tousimis, A J; Price, D L

    1969-07-01

    A species of Flavobacterium that consistently attacks pure phytol and can use it as a sole source of carbon has been isolated from the blue-green algal sediment of Mud Lake, Florida. Biochemical tests demonstrate that this bacterium also readily uses various other organic compounds. This bacterium may account for the degradation products of chlorophyll and its side chain phytol, which have been found in the Mud Lake algal sediment. Phytol and its degradation products play a role in Refsum's disease, but phytol is also the most promising precursor of the isoprenoid hydrocarbons found in oil shale of the Green River Formation (Eocene) of Colorado, Utah, and Wyoming. The discovery of this species of Flavobacterium is a significant product of a protracted study of the bacteriology, phycology, zoology, and geochemistry of the algal sediment forming in Mud Lake, which is believed to be a modern analogue of the kind of algal sediment that, through geologic time, became oil shale.

  5. Carotenoid composition and its chemotaxonomic significance in leaves of ten species of the genus Ceratozamia (Cycads).

    PubMed

    Cardinif, Franco; Bonzi, Laura Morassi

    2005-05-01

    The qualitative composition and localization of carotenoids in leaflets of ten species of the genus Ceratozamia (Cycads) was investigated, and the distributions of 16 of these carotenoids, which were isolated and differently located in the chloroplast, are discussed. Eight classic carotenoids are located in the thylakoidal membranes of the chloroplasts of all ten of the species examined. In contrast, eight red keto-carotenoids are unusually located in several plastoglobules present in the stroma of nine species Ceratozamia mexicana Brongn. excluded. The characteristic red-brown transitory coloration shown by the newly formed leaflets during the first stages of development is due to this latter keto mixture. It is constituted of three very rare keto-carotenoids, which were, in our case, identified for the first time from the photosynthetic tissues (semi-beta-carotenone, triphasiaxanthin, and beta-carotenone). It is also constituted of four others, which are completely novel (ceratoxanthin, ceratozamiaxanthin, kuesteriaxanthin, and ceratoxanthone). Some hypotheses about their presence and function are presented.

  6. Species composition and distribution patterns of fishes captured by longlines on the Mid-Atlantic Ridge

    NASA Astrophysics Data System (ADS)

    Fossen, I.; Cotton, C. F.; Bergstad, O. A.; Dyb, J. E.

    2008-01-01

    During the 2004 MAR-ECO expedition to the Mid-Atlantic Ridge, the M/S Loran deployed longlines and caught a total of 8518 fish, representing 40 species and 17 families. The 59 longline sets were distributed across the ridge axis at depths ranging from 400 to 4300 m within two sub-areas, i.e. just north of the Azores archipelago and in the Charlie-Gibbs Fracture Zone (CGFZ). Overall, chondrichthyans dominated the catches and contributed nearly 60% in terms of both weight and numbers. This was mainly due to the dominance of Etmopterus princeps in both sub-areas. Multidimensional scaling using species-by-station data indicated an assemblage distribution related primarily to factors varying by depth and latitude. Grouping patterns of stations were not very pronounced, suggesting a gradual spatial change rather than abrupt changes in species composition by depth or latitude. Catch rates peaked at the shallower stations in the CGFZ sub-area, and generally decreased with depth. Relatively large individuals dominated, and the overall mean weight was 2.4 kg. Average fish weight was lower in the CGFZ sub-area than in the southern sub-area. No depth-related pattern was found.

  7. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition

    PubMed Central

    Li, Yongfu; Chen, Na; Harmon, Mark E.; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A.; Mao, Jingdong

    2015-01-01

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11 litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced 13C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species. PMID:26515033

  8. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition

    NASA Astrophysics Data System (ADS)

    Li, Yongfu; Chen, Na; Harmon, Mark E.; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A.; Mao, Jingdong

    2015-10-01

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11 litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced 13C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species.

  9. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition.

    PubMed

    Li, Yongfu; Chen, Na; Harmon, Mark E; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A; Mao, Jingdong

    2015-10-30

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11 litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced (13)C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species.

  10. Formation of disinfection byproducts from chlor(am)ination of algal organic matter.

    PubMed

    Yang, Xin; Guo, Wanhong; Shen, Qianqian

    2011-12-15

    Algal cells and extracellular organic matter (EOM) of two algae species, Microcystis aeruginosa (blue-green algae) and Chlorella vulgaris (green algae), were characterized. The low specific UV absorbance (SUVA) values of EOM and cells from both algae species indicated the very hydrophilic nature of algal materials. Fluorescence excitation-emission matrix showed that algal EOM and cells were enriched with protein-like and soluble microbial by-product-like matters. The formation potential of a variety of disinfection by-products (DBPs) during chlorination and chloramination of algal cells and EOM were evaluated. Algal cells and EOM of Microcystis and Chlorella exhibited a high potential for DBP formation. Yields of total DBPs varied with the algae cultivation age. Cellular materials contributed more to DBP formation than EOM. The presence of bromide led to higher concentrations of total trihalomethanes (THMs), haloacetonitriles (HANs), and halonitromethanes (HNMs). Bromide also shifted the DBPs to brominated ones. Bromine incorporation was higher in HNMs than in THMs and HANs. Compared to natural organic matter, algae under bloom seasons can contribute significantly to the DBP precursor pool.

  11. Detecting state changes for ecosystem conservation with long-term monitoring of species composition.

    PubMed

    Mason, T J; Keith, D A; Letten, A D

    2017-03-01

    Effective conservation requires an understanding not only of contemporary vegetation distributions in the landscape, but also cognizance of vegetation transitions over time with the goal of maintaining persistence of all states within the landscape. Using a state and transition model framework, we investigated temporal transitions over 31 years in species composition among five upland swamp vegetation communities in southeastern Australia. We applied fuzzy clustering to document transitions across communities; evaluated the resilience and resistance of communities to change; and explored the relationship between ecosystem states and major environmental factors posited to structure the system. We also evaluated the predictive ability of an established vegetation dynamics model. We found that community composition remained stable or underwent reversible or directional transitions depending on the vegetation type. Wetter communities (Ti-tree thicket and Cyperoid heath) were more stable (i.e., resistant) while drier communities showed a greater propensity to transition (i.e., had lower resistance) under the observed disturbance regime (low variance fire intervals). The resilience of drier communities differed under this regime, with Banksia thicket showing reversible compositional change, while Restioid heath and Sedgeland showed directional change. In accord with an established conceptual model, we found that communities were distributed along a hydrological gradient. In addition, vegetation structure, along with light penetration to ground level, differentiated communities. However, internal dynamics of drier communities were complex: differences in fire regime (penultimate fire interval in 2014 and number of fires since 1965) were unable to predict differences in community membership among sites. Aspects of the fire regime are expected to be more important predictors if fire intervals vary more strongly among sites in the future. Fuzzy clustering of compositional

  12. Assemblage composition of fungal wood-decay species has major influence on how climate and wood quality modify decomposition.

    PubMed

    Venugopal, Parvathy; Junninen, Kaisa; Edman, Mattias; Kouki, Jari

    2017-01-10

    The interactions among saprotrophic fungal species, as well as their interactions with environmental factors, may have a major influence on wood decay and carbon release in ecosystems. We studied the effects that decomposer diversity (species richness and assemblage composition) have on wood decomposition when the climatic variables and substrate quality vary simultaneously. We used two temperature (16 and 21(°)C) and two humidity (70% and 90%) levels at two wood qualities (wood from managed and old-growth forests) of Pinus sylvestris In a nine-month experiment, the effects of fungal diversity were tested using four wood-decaying fungi (Antrodia xantha, Dichomitus squalens, Fomitopsis pinicola and Gloeophyllum protractum) at assemblage levels one, two and four species. Wood quality and assemblage composition affected the influence of climatic factors on decomposition rates. Fungal assemblage composition was found to be more important than fungal species richness, indicating that species-specific fungal traits are of paramount importance in driving decomposition. We conclude that models containing fungal wood-decay species (and wood-based carbon) need to take into account species - and assemblage composition - specific properties to improve predictive capacity in regard to decomposition related carbon dynamics.

  13. Consistency of effects of tropical forest disturbance on species composition and richness relative to use of indicator taxa.

    PubMed

    Stork, N E; Srivastava, D S; Eggleton, P; Hodda, M; Lawson, G; Leakey, R R B; Watt, A D

    2016-12-16

    A citation-classic study published almost twenty years ago found that the species richness of eight taxa each responded differently to anthropogenic disturbance in Cameroon forests. Recent developments in conservation biology suggest that net number of species is an insensitive measure of change and that understanding which species are affected by disturbance is more important. In addition, it is recognized that all disturbance types are not equal in their effect on species and that grouping species according to function rather than taxonomy is more informative of responses of biodiversity to change. In a reanalysis of most of the original Cameroon dataset (canopy/ground ants, termites, canopy beetles, nematodes and butterflies) using more a inclusive measure of forest disturbance, which recognised four component drivers of change, we found disturbance effects are always stronger on species composition than on species richness and are mostly concordant between taxa. Further, the magnitude of compositional change relative to reference site was correlated across several taxa. In contrast to findings in the original study, species richness for most groups did not decline with disturbance level, providing additional support to the view that trends in species richness at local scales do not reflect the resilience of ecosystems to disturbance. Although disturbance generally caused changes in composition, the strength of this relationship depended on the disturbance driver and the functional group of organisms considered. This re-analysis suggests consideration of the impact of different forms of disturbance on species composition rather than net numbers of species, and the functional similarity of different taxa are important for conservation management when assessing the impacts of disturbance on biodiversity. This article is protected by copyright. All rights reserved.