Science.gov

Sample records for algorithm developed specifically

  1. Algorithm development

    NASA Technical Reports Server (NTRS)

    Barth, Timothy J.; Lomax, Harvard

    1987-01-01

    The past decade has seen considerable activity in algorithm development for the Navier-Stokes equations. This has resulted in a wide variety of useful new techniques. Some examples for the numerical solution of the Navier-Stokes equations are presented, divided into two parts. One is devoted to the incompressible Navier-Stokes equations, and the other to the compressible form.

  2. NOSS altimeter algorithm specifications

    NASA Technical Reports Server (NTRS)

    Hancock, D. W.; Forsythe, R. G.; Mcmillan, J. D.

    1982-01-01

    A description of all algorithms required for altimeter processing is given. Each description includes title, description, inputs/outputs, general algebraic sequences and data volume. All required input/output data files are described and the computer resources required for the entire altimeter processing system were estimated. The majority of the data processing requirements for any radar altimeter of the Seasat-1 type are scoped. Additions and deletions could be made for the specific altimeter products required by other projects.

  3. NOSS Altimeter Detailed Algorithm specifications

    NASA Technical Reports Server (NTRS)

    Hancock, D. W.; Mcmillan, J. D.

    1982-01-01

    The details of the algorithms and data sets required for satellite radar altimeter data processing are documented in a form suitable for (1) development of the benchmark software and (2) coding the operational software. The algorithms reported in detail are those established for altimeter processing. The algorithms which required some additional development before documenting for production were only scoped. The algorithms are divided into two levels of processing. The first level converts the data to engineering units and applies corrections for instrument variations. The second level provides geophysical measurements derived from altimeter parameters for oceanographic users.

  4. Algorithm-development activities

    NASA Technical Reports Server (NTRS)

    Carder, Kendall L.

    1994-01-01

    The task of algorithm-development activities at USF continues. The algorithm for determining chlorophyll alpha concentration, (Chl alpha) and gelbstoff absorption coefficient for SeaWiFS and MODIS-N radiance data is our current priority.

  5. Parallel algorithm development

    SciTech Connect

    Adams, T.F.

    1996-06-01

    Rapid changes in parallel computing technology are causing significant changes in the strategies being used for parallel algorithm development. One approach is simply to write computer code in a standard language like FORTRAN 77 or with the expectation that the compiler will produce executable code that will run in parallel. The alternatives are: (1) to build explicit message passing directly into the source code; or (2) to write source code without explicit reference to message passing or parallelism, but use a general communications library to provide efficient parallel execution. Application of these strategies is illustrated with examples of codes currently under development.

  6. STAR Algorithm Integration Team - Facilitating operational algorithm development

    NASA Astrophysics Data System (ADS)

    Mikles, V. J.

    2015-12-01

    The NOAA/NESDIS Center for Satellite Research and Applications (STAR) provides technical support of the Joint Polar Satellite System (JPSS) algorithm development and integration tasks. Utilizing data from the S-NPP satellite, JPSS generates over thirty Environmental Data Records (EDRs) and Intermediate Products (IPs) spanning atmospheric, ocean, cryosphere, and land weather disciplines. The Algorithm Integration Team (AIT) brings technical expertise and support to product algorithms, specifically in testing and validating science algorithms in a pre-operational environment. The AIT verifies that new and updated algorithms function in the development environment, enforces established software development standards, and ensures that delivered packages are functional and complete. AIT facilitates the development of new JPSS-1 algorithms by implementing a review approach based on the Enterprise Product Lifecycle (EPL) process. Building on relationships established during the S-NPP algorithm development process and coordinating directly with science algorithm developers, the AIT has implemented structured reviews with self-contained document suites. The process has supported algorithm improvements for products such as ozone, active fire, vegetation index, and temperature and moisture profiles.

  7. Advanced CHP Control Algorithms: Scope Specification

    SciTech Connect

    Katipamula, Srinivas; Brambley, Michael R.

    2006-04-28

    The primary objective of this multiyear project is to develop algorithms for combined heat and power systems to ensure optimal performance, increase reliability, and lead to the goal of clean, efficient, reliable and affordable next generation energy systems.

  8. Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms

    PubMed Central

    Pacheco, Maria P.; Pfau, Thomas; Sauter, Thomas

    2016-01-01

    Recent progress in high-throughput data acquisition has shifted the focus from data generation to processing and understanding of how to integrate collected information. Context specific reconstruction based on generic genome scale models like ReconX or HMR has the potential to become a diagnostic and treatment tool tailored to the analysis of specific individuals. The respective computational algorithms require a high level of predictive power, robustness and sensitivity. Although multiple context specific reconstruction algorithms were published in the last 10 years, only a fraction of them is suitable for model building based on human high-throughput data. Beside other reasons, this might be due to problems arising from the limitation to only one metabolic target function or arbitrary thresholding. This review describes and analyses common validation methods used for testing model building algorithms. Two major methods can be distinguished: consistency testing and comparison based testing. The first is concerned with robustness against noise, e.g., missing data due to the impossibility to distinguish between the signal and the background of non-specific binding of probes in a microarray experiment, and whether distinct sets of input expressed genes corresponding to i.e., different tissues yield distinct models. The latter covers methods comparing sets of functionalities, comparison with existing networks or additional databases. We test those methods on several available algorithms and deduce properties of these algorithms that can be compared with future developments. The set of tests performed, can therefore serve as a benchmarking procedure for future algorithms. PMID:26834640

  9. Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms.

    PubMed

    Pacheco, Maria P; Pfau, Thomas; Sauter, Thomas

    2015-01-01

    Recent progress in high-throughput data acquisition has shifted the focus from data generation to processing and understanding of how to integrate collected information. Context specific reconstruction based on generic genome scale models like ReconX or HMR has the potential to become a diagnostic and treatment tool tailored to the analysis of specific individuals. The respective computational algorithms require a high level of predictive power, robustness and sensitivity. Although multiple context specific reconstruction algorithms were published in the last 10 years, only a fraction of them is suitable for model building based on human high-throughput data. Beside other reasons, this might be due to problems arising from the limitation to only one metabolic target function or arbitrary thresholding. This review describes and analyses common validation methods used for testing model building algorithms. Two major methods can be distinguished: consistency testing and comparison based testing. The first is concerned with robustness against noise, e.g., missing data due to the impossibility to distinguish between the signal and the background of non-specific binding of probes in a microarray experiment, and whether distinct sets of input expressed genes corresponding to i.e., different tissues yield distinct models. The latter covers methods comparing sets of functionalities, comparison with existing networks or additional databases. We test those methods on several available algorithms and deduce properties of these algorithms that can be compared with future developments. The set of tests performed, can therefore serve as a benchmarking procedure for future algorithms.

  10. Messy genetic algorithms: Recent developments

    SciTech Connect

    Kargupta, H.

    1996-09-01

    Messy genetic algorithms define a rare class of algorithms that realize the need for detecting appropriate relations among members of the search domain in optimization. This paper reviews earlier works in messy genetic algorithms and describes some recent developments. It also describes the gene expression messy GA (GEMGA)--an {Omicron}({Lambda}{sup {kappa}}({ell}{sup 2} + {kappa})) sample complexity algorithm for the class of order-{kappa} delineable problems (problems that can be solved by considering no higher than order-{kappa} relations) of size {ell} and alphabet size {Lambda}. Experimental results are presented to demonstrate the scalability of the GEMGA.

  11. Multisensor data fusion algorithm development

    SciTech Connect

    Yocky, D.A.; Chadwick, M.D.; Goudy, S.P.; Johnson, D.K.

    1995-12-01

    This report presents a two-year LDRD research effort into multisensor data fusion. We approached the problem by addressing the available types of data, preprocessing that data, and developing fusion algorithms using that data. The report reflects these three distinct areas. First, the possible data sets for fusion are identified. Second, automated registration techniques for imagery data are analyzed. Third, two fusion techniques are presented. The first fusion algorithm is based on the two-dimensional discrete wavelet transform. Using test images, the wavelet algorithm is compared against intensity modulation and intensity-hue-saturation image fusion algorithms that are available in commercial software. The wavelet approach outperforms the other two fusion techniques by preserving spectral/spatial information more precisely. The wavelet fusion algorithm was also applied to Landsat Thematic Mapper and SPOT panchromatic imagery data. The second algorithm is based on a linear-regression technique. We analyzed the technique using the same Landsat and SPOT data.

  12. Evolutionary development of path planning algorithms

    SciTech Connect

    Hage, M

    1998-09-01

    This paper describes the use of evolutionary software techniques for developing both genetic algorithms and genetic programs. Genetic algorithms are evolved to solve a specific problem within a fixed and known environment. While genetic algorithms can evolve to become very optimized for their task, they often are very specialized and perform poorly if the environment changes. Genetic programs are evolved through simultaneous training in a variety of environments to develop a more general controller behavior that operates in unknown environments. Performance of genetic programs is less optimal than a specially bred algorithm for an individual environment, but the controller performs acceptably under a wider variety of circumstances. The example problem addressed in this paper is evolutionary development of algorithms and programs for path planning in nuclear environments, such as Chernobyl.

  13. Developing Scoring Algorithms

    Cancer.gov

    We developed scoring procedures to convert screener responses to estimates of individual dietary intake for fruits and vegetables, dairy, added sugars, whole grains, fiber, and calcium using the What We Eat in America 24-hour dietary recall data from the 2003-2006 NHANES.

  14. Specification of Selected Performance Monitoring and Commissioning Verification Algorithms for CHP Systems

    SciTech Connect

    Brambley, Michael R.; Katipamula, Srinivas

    2006-10-06

    Pacific Northwest National Laboratory (PNNL) is assisting the U.S. Department of Energy (DOE) Distributed Energy (DE) Program by developing advanced control algorithms that would lead to development of tools to enhance performance and reliability, and reduce emissions of distributed energy technologies, including combined heat and power technologies. This report documents phase 2 of the program, providing a detailed functional specification for algorithms for performance monitoring and commissioning verification, scheduled for development in FY 2006. The report identifies the systems for which algorithms will be developed, the specific functions of each algorithm, metrics which the algorithms will output, and inputs required by each algorithm.

  15. ALGORITHM DEVELOPMENT FOR SPATIAL OPERATORS.

    USGS Publications Warehouse

    Claire, Robert W.

    1984-01-01

    An approach is given that develops spatial operators about the basic geometric elements common to spatial data structures. In this fashion, a single set of spatial operators may be accessed by any system that reduces its operands to such basic generic representations. Algorithms based on this premise have been formulated to perform operations such as separation, overlap, and intersection. Moreover, this generic approach is well suited for algorithms that exploit concurrent properties of spatial operators. The results may provide a framework for a geometry engine to support fundamental manipulations within a geographic information system.

  16. Specific optimization of genetic algorithm on special algebras

    NASA Astrophysics Data System (ADS)

    Habiballa, Hashim; Novak, Vilem; Dyba, Martin; Schenk, Jiri

    2016-06-01

    Searching for complex finite algebras can be succesfully done by the means of genetic algorithm as we showed in former works. This genetic algorithm needs specific optimization of crossover and mutation. We present details about these optimizations which are already implemented in software application for this task - EQCreator.

  17. Model Specification Searches Using Ant Colony Optimization Algorithms

    ERIC Educational Resources Information Center

    Marcoulides, George A.; Drezner, Zvi

    2003-01-01

    Ant colony optimization is a recently proposed heuristic procedure inspired by the behavior of real ants. This article applies the procedure to model specification searches in structural equation modeling and reports the results. The results demonstrate the capabilities of ant colony optimization algorithms for conducting automated searches.

  18. Passive microwave algorithm development and evaluation

    NASA Technical Reports Server (NTRS)

    Petty, Grant W.

    1995-01-01

    The scientific objectives of this grant are: (1) thoroughly evaluate, both theoretically and empirically, all available Special Sensor Microwave Imager (SSM/I) retrieval algorithms for column water vapor, column liquid water, and surface wind speed; (2) where both appropriate and feasible, develop, validate, and document satellite passive microwave retrieval algorithms that offer significantly improved performance compared with currently available algorithms; and (3) refine and validate a novel physical inversion scheme for retrieving rain rate over the ocean. This report summarizes work accomplished or in progress during the first year of a three year grant. The emphasis during the first year has been on the validation and refinement of the rain rate algorithm published by Petty and on the analysis of independent data sets that can be used to help evaluate the performance of rain rate algorithms over remote areas of the ocean. Two articles in the area of global oceanic precipitation are attached.

  19. The Development of Educational Specifications.

    ERIC Educational Resources Information Center

    North Carolina State Board of Education, Raleigh.

    This publication is intended to assist local boards of education, superintendents, and staff in the organization and development of educational specifications. It was written because most educators have little knowledge about the purpose, process, organization, or contents of the finished product (educational specifications). It provides a…

  20. Operational algorithm development and refinement approaches

    NASA Astrophysics Data System (ADS)

    Ardanuy, Philip E.

    2003-11-01

    takes into account the specific maturities of each system"s (sensor and algorithm) technology to provide for a program that contains continuous improvement while retaining its manageability.

  1. GOES-R Geostationary Lightning Mapper Performance Specifications and Algorithms

    NASA Technical Reports Server (NTRS)

    Mach, Douglas M.; Goodman, Steven J.; Blakeslee, Richard J.; Koshak, William J.; Petersen, William A.; Boldi, Robert A.; Carey, Lawrence D.; Bateman, Monte G.; Buchler, Dennis E.; McCaul, E. William, Jr.

    2008-01-01

    The Geostationary Lightning Mapper (GLM) is a single channel, near-IR imager/optical transient event detector, used to detect, locate and measure total lightning activity over the full-disk. The next generation NOAA Geostationary Operational Environmental Satellite (GOES-R) series will carry a GLM that will provide continuous day and night observations of lightning. The mission objectives for the GLM are to: (1) Provide continuous, full-disk lightning measurements for storm warning and nowcasting, (2) Provide early warning of tornadic activity, and (2) Accumulate a long-term database to track decadal changes of lightning. The GLM owes its heritage to the NASA Lightning Imaging Sensor (1997- present) and the Optical Transient Detector (1995-2000), which were developed for the Earth Observing System and have produced a combined 13 year data record of global lightning activity. GOES-R Risk Reduction Team and Algorithm Working Group Lightning Applications Team have begun to develop the Level 2 algorithms and applications. The science data will consist of lightning "events", "groups", and "flashes". The algorithm is being designed to be an efficient user of the computational resources. This may include parallelization of the code and the concept of sub-dividing the GLM FOV into regions to be processed in parallel. Proxy total lightning data from the NASA Lightning Imaging Sensor on the Tropical Rainfall Measuring Mission (TRMM) satellite and regional test beds (e.g., Lightning Mapping Arrays in North Alabama, Oklahoma, Central Florida, and the Washington DC Metropolitan area) are being used to develop the prelaunch algorithms and applications, and also improve our knowledge of thunderstorm initiation and evolution.

  2. Infrared algorithm development for ocean observations

    NASA Technical Reports Server (NTRS)

    Brown, Otis B.

    1995-01-01

    Efforts continue under this contract to develop algorithms for the computation of sea surface temperature (SST) from MODIS infrared retrievals. This effort includes radiative transfer modeling, comparison of in situ and satellite observations, development and evaluation of processing and networking methodologies for algorithm computation and data accession, evaluation of surface validation approaches for IR radiances, and participation in MODIS (project) related activities. Efforts in this contract period have focused on radiative transfer modeling, evaluation of atmospheric correction methodologies, involvement in field studies, production and evaluation of new computer networking strategies, and objective analysis approaches.

  3. Connected-Health Algorithm: Development and Evaluation.

    PubMed

    Vlahu-Gjorgievska, Elena; Koceski, Saso; Kulev, Igor; Trajkovik, Vladimir

    2016-04-01

    Nowadays, there is a growing interest towards the adoption of novel ICT technologies in the field of medical monitoring and personal health care systems. This paper proposes design of a connected health algorithm inspired from social computing paradigm. The purpose of the algorithm is to give a recommendation for performing a specific activity that will improve user's health, based on his health condition and set of knowledge derived from the history of the user and users with similar attitudes to him. The algorithm could help users to have bigger confidence in choosing their physical activities that will improve their health. The proposed algorithm has been experimentally validated using real data collected from a community of 1000 active users. The results showed that the recommended physical activity, contributed towards weight loss of at least 0.5 kg, is found in the first half of the ordered list of recommendations, generated by the algorithm, with the probability > 0.6 with 1 % level of significance. PMID:26922593

  4. Progress in AMSR Snow Algorithm Development

    NASA Technical Reports Server (NTRS)

    Chang, Alfred; Koike, Toshio

    1998-01-01

    Advanced Microwave Scanning Radiometer (AMSR) will be flown on-board of the Japanese Advanced Earth Observing Satellite-II (ADEOS-II) and United States Earth Observation System (EOS) PM-1 satellite. AMSR is a passive microwave radiometer with frequency ranges from 6.9 GHz to 89 GHz. It scans conically with a constant incidence angle of 55 deg at the Earth's surface. The swath width is about 1600 km. With a large antenna, AMSR will provide the best spatial resolution of multi-frequency radiometer from space. This provides us an opportunity to improve the snow parameter retrieval. Accurate determination of snow parameters from space is a challenging effort. Over the years, many different techniques have been used to account for the complicated snow parameters such as the density, stratigraphy, snow grain size, temperature variation of the snow-pack. Forest type, fractional forest cover and land use type also need to be considered in developing an improved retrieval algorithm. However, snow is such a dynamic variable, snow-pack parameter keeps changing once the snow is deposited on the earth surface. Currently, NASDA and NASA are developing AMSR snow retrieval algorithms. These algorithms are now being carefully tested and evaluated using the SSM/I data. Due to limited snow-pack data available for comparison, this activity is progressing slowly. However, it is clear that in order to improve the snow retrieval algorithm, it is necessary to model the metamorphism history of the snow-pack.

  5. Computational Fluid Dynamics. [numerical methods and algorithm development

    NASA Technical Reports Server (NTRS)

    1992-01-01

    This collection of papers was presented at the Computational Fluid Dynamics (CFD) Conference held at Ames Research Center in California on March 12 through 14, 1991. It is an overview of CFD activities at NASA Lewis Research Center. The main thrust of computational work at Lewis is aimed at propulsion systems. Specific issues related to propulsion CFD and associated modeling will also be presented. Examples of results obtained with the most recent algorithm development will also be presented.

  6. Algorithm Development Library for Environmental Satellite Missions

    NASA Astrophysics Data System (ADS)

    Smith, D. C.; Grant, K. D.; Miller, S. W.; Jamilkowski, M. L.

    2012-12-01

    science will need to migrate into the operational system. In addition, as new techniques are found to improve, supplement, or replace existing products, these changes will also require implementation into the operational system. In the past, operationalizing science algorithms and integrating them into active systems often required months of work. In order to significantly shorten the time and effort required for this activity, Raytheon has developed the Algorithm Development Library (ADL). The ADL enables scientist and researchers to develop algorithms on their own platforms, and provide these to Raytheon in a form that can be rapidly integrated directly into the operational baseline. As the JPSS CGS is a multi-mission ground system, algorithms are not restricted to Suomi NPP or JPSS missions. The ADL provides a development environment that any environmental remote sensing mission scientist can use to create algorithms that will plug into a JPSS CGS instantiation. This paper describes the ADL and how scientists and researchers can use it in their own environments.

  7. Design specification for the whole-body algorithm

    NASA Technical Reports Server (NTRS)

    Fitzjerrell, D. G.

    1974-01-01

    The necessary requirements and guidelines for the construction of a computer program of the whole-body algorithm are presented. The minimum subsystem models required to effectively simulate the total body response to stresses of interest are (1) cardiovascular (exercise/LBNP/tilt); (2) respiratory (Grodin's model); (3) thermoregulatory (Stolwijk's model); and (4) long-term circulatory fluid and electrolyte (Guyton's model). The whole-body algorithm must be capable of simulating response to stresses from CO2 inhalation, hypoxia, thermal environmental exercise (sitting and supine), LBNP, and tilt (changing body angles in gravity).

  8. A Proposed India-Specific Algorithm for Management of Type 2 Diabetes.

    PubMed

    2016-06-01

    Several algorithms and guidelines have been proposed by countries and international professional bodies; however, no recent updated management algorithm is available for Asian Indians. Specifically, algorithms developed and validated in developed nations may not be relevant or applicable to patients in India because of several factors: early age of onset of diabetes, occurrence of diabetes in nonobese and sometimes lean people, differences in the relative contributions of insulin resistance and β-cell dysfunction, marked postprandial glycemia, frequent infections including tuberculosis, low access to healthcare and medications in people of low socioeconomic stratum, ethnic dietary practices (e.g., ingestion of high-carbohydrate diets), and inadequate education regarding hypoglycemia. All these factors should be considered to choose appropriate therapeutic option in this population. The proposed algorithm is simple, suggests less expensive drugs, and tries to provide an effective and comprehensive framework for delivery of diabetes therapy in primary care in India. The proposed guidelines agree with international recommendations in favoring individualization of therapeutic targets as well as modalities of treatment in a flexible manner suitable to the Indian population. PMID:26909751

  9. Global Precipitation Measurement: GPM Microwave Imager (GMI) Algorithm Development Approach

    NASA Technical Reports Server (NTRS)

    Stocker, Erich Franz

    2009-01-01

    This slide presentation reviews the approach to the development of the Global Precipitation Measurement algorithm. This presentation includes information about the responsibilities for the development of the algorithm, and the calibration. Also included is information about the orbit, and the sun angle. The test of the algorithm code will be done with synthetic data generated from the Precipitation Processing System (PPS).

  10. Recognition of plant parts with problem-specific algorithms

    NASA Astrophysics Data System (ADS)

    Schwanke, Joerg; Brendel, Thorsten; Jensch, Peter F.; Megnet, Roland

    1994-06-01

    Automatic micropropagation is necessary to produce cost-effective high amounts of biomass. Juvenile plants are dissected in clean- room environment on particular points on the stem or the leaves. A vision-system detects possible cutting points and controls a specialized robot. This contribution is directed to the pattern- recognition algorithms to detect structural parts of the plant.

  11. Accuracy of patient specific organ-dose estimates obtained using an automated image segmentation algorithm

    NASA Astrophysics Data System (ADS)

    Gilat-Schmidt, Taly; Wang, Adam; Coradi, Thomas; Haas, Benjamin; Star-Lack, Josh

    2016-03-01

    The overall goal of this work is to develop a rapid, accurate and fully automated software tool to estimate patient-specific organ doses from computed tomography (CT) scans using a deterministic Boltzmann Transport Equation solver and automated CT segmentation algorithms. This work quantified the accuracy of organ dose estimates obtained by an automated segmentation algorithm. The investigated algorithm uses a combination of feature-based and atlas-based methods. A multiatlas approach was also investigated. We hypothesize that the auto-segmentation algorithm is sufficiently accurate to provide organ dose estimates since random errors at the organ boundaries will average out when computing the total organ dose. To test this hypothesis, twenty head-neck CT scans were expertly segmented into nine regions. A leave-one-out validation study was performed, where every case was automatically segmented with each of the remaining cases used as the expert atlas, resulting in nineteen automated segmentations for each of the twenty datasets. The segmented regions were applied to gold-standard Monte Carlo dose maps to estimate mean and peak organ doses. The results demonstrated that the fully automated segmentation algorithm estimated the mean organ dose to within 10% of the expert segmentation for regions other than the spinal canal, with median error for each organ region below 2%. In the spinal canal region, the median error was 7% across all data sets and atlases, with a maximum error of 20%. The error in peak organ dose was below 10% for all regions, with a median error below 4% for all organ regions. The multiple-case atlas reduced the variation in the dose estimates and additional improvements may be possible with more robust multi-atlas approaches. Overall, the results support potential feasibility of an automated segmentation algorithm to provide accurate organ dose estimates.

  12. Motion Cueing Algorithm Development: Initial Investigation and Redesign of the Algorithms

    NASA Technical Reports Server (NTRS)

    Telban, Robert J.; Wu, Weimin; Cardullo, Frank M.; Houck, Jacob A. (Technical Monitor)

    2000-01-01

    In this project four motion cueing algorithms were initially investigated. The classical algorithm generated results with large distortion and delay and low magnitude. The NASA adaptive algorithm proved to be well tuned with satisfactory performance, while the UTIAS adaptive algorithm produced less desirable results. Modifications were made to the adaptive algorithms to reduce the magnitude of undesirable spikes. The optimal algorithm was found to have the potential for improved performance with further redesign. The center of simulator rotation was redefined. More terms were added to the cost function to enable more tuning flexibility. A new design approach using a Fortran/Matlab/Simulink setup was employed. A new semicircular canals model was incorporated in the algorithm. With these changes results show the optimal algorithm has some advantages over the NASA adaptive algorithm. Two general problems observed in the initial investigation required solutions. A nonlinear gain algorithm was developed that scales the aircraft inputs by a third-order polynomial, maximizing the motion cues while remaining within the operational limits of the motion system. A braking algorithm was developed to bring the simulator to a full stop at its motion limit and later release the brake to follow the cueing algorithm output.

  13. Development of Speckle Interferometry Algorithm and System

    SciTech Connect

    Shamsir, A. A. M.; Jafri, M. Z. M.; Lim, H. S.

    2011-05-25

    Electronic speckle pattern interferometry (ESPI) method is a wholefield, non destructive measurement method widely used in the industries such as detection of defects on metal bodies, detection of defects in intergrated circuits in digital electronics components and in the preservation of priceless artwork. In this research field, this method is widely used to develop algorithms and to develop a new laboratory setup for implementing the speckle pattern interferometry. In speckle interferometry, an optically rough test surface is illuminated with an expanded laser beam creating a laser speckle pattern in the space surrounding the illuminated region. The speckle pattern is optically mixed with a second coherent light field that is either another speckle pattern or a smooth light field. This produces an interferometric speckle pattern that will be detected by sensor to count the change of the speckle pattern due to force given. In this project, an experimental setup of ESPI is proposed to analyze a stainless steel plate using 632.8 nm (red) wavelength of lights.

  14. Optimization of a Turboprop UAV for Maximum Loiter and Specific Power Using Genetic Algorithm

    NASA Astrophysics Data System (ADS)

    Dinc, Ali

    2016-09-01

    In this study, a genuine code was developed for optimization of selected parameters of a turboprop engine for an unmanned aerial vehicle (UAV) by employing elitist genetic algorithm. First, preliminary sizing of a UAV and its turboprop engine was done, by the code in a given mission profile. Secondly, single and multi-objective optimization were done for selected engine parameters to maximize loiter duration of UAV or specific power of engine or both. In single objective optimization, as first case, UAV loiter time was improved with an increase of 17.5% from baseline in given boundaries or constraints of compressor pressure ratio and burner exit temperature. In second case, specific power was enhanced by 12.3% from baseline. In multi-objective optimization case, where previous two objectives are considered together, loiter time and specific power were increased by 14.2% and 9.7% from baseline respectively, for the same constraints.

  15. Using patient-specific phantoms to evaluate deformable image registration algorithms for adaptive radiation therapy.

    PubMed

    Stanley, Nick; Glide-Hurst, Carri; Kim, Jinkoo; Adams, Jeffrey; Li, Shunshan; Wen, Ning; Chetty, Indrin J; Zhong, Hualiang

    2013-11-04

    The quality of adaptive treatment planning depends on the accuracy of its underlying deformable image registration (DIR). The purpose of this study is to evaluate the performance of two DIR algorithms, B-spline-based deformable multipass (DMP) and deformable demons (Demons), implemented in a commercial software package. Evaluations were conducted using both computational and physical deformable phantoms. Based on a finite element method (FEM), a total of 11 computational models were developed from a set of CT images acquired from four lung and one prostate cancer patients. FEM generated displacement vector fields (DVF) were used to construct the lung and prostate image phantoms. Based on a fast-Fourier transform technique, image noise power spectrum was incorporated into the prostate image phantoms to create simulated CBCT images. The FEM-DVF served as a gold standard for verification of the two registration algorithms performed on these phantoms. The registration algorithms were also evaluated at the homologous points quantified in the CT images of a physical lung phantom. The results indicated that the mean errors of the DMP algorithm were in the range of 1.0 ~ 3.1 mm for the computational phantoms and 1.9 mm for the physical lung phantom. For the computational prostate phantoms, the corresponding mean error was 1.0-1.9 mm in the prostate, 1.9-2.4mm in the rectum, and 1.8-2.1 mm over the entire patient body. Sinusoidal errors induced by B-spline interpolations were observed in all the displacement profiles of the DMP registrations. Regions of large displacements were observed to have more registration errors. Patient-specific FEM models have been developed to evaluate the DIR algorithms implemented in the commercial software package. It has been found that the accuracy of these algorithms is patient dependent and related to various factors including tissue deformation magnitudes and image intensity gradients across the regions of interest. This may suggest that

  16. Algorithm for automatic forced spirometry quality assessment: technological developments.

    PubMed

    Melia, Umberto; Burgos, Felip; Vallverdú, Montserrat; Velickovski, Filip; Lluch-Ariet, Magí; Roca, Josep; Caminal, Pere

    2014-01-01

    We hypothesized that the implementation of automatic real-time assessment of quality of forced spirometry (FS) may significantly enhance the potential for extensive deployment of a FS program in the community. Recent studies have demonstrated that the application of quality criteria defined by the ATS/ERS (American Thoracic Society/European Respiratory Society) in commercially available equipment with automatic quality assessment can be markedly improved. To this end, an algorithm for assessing quality of FS automatically was reported. The current research describes the mathematical developments of the algorithm. An innovative analysis of the shape of the spirometric curve, adding 23 new metrics to the traditional 4 recommended by ATS/ERS, was done. The algorithm was created through a two-step iterative process including: (1) an initial version using the standard FS curves recommended by the ATS; and, (2) a refined version using curves from patients. In each of these steps the results were assessed against one expert's opinion. Finally, an independent set of FS curves from 291 patients was used for validation purposes. The novel mathematical approach to characterize the FS curves led to appropriate FS classification with high specificity (95%) and sensitivity (96%). The results constitute the basis for a successful transfer of FS testing to non-specialized professionals in the community.

  17. A Developed ESPRIT Algorithm for DOA Estimation

    NASA Astrophysics Data System (ADS)

    Fayad, Youssef; Wang, Caiyun; Cao, Qunsheng; Hafez, Alaa El-Din Sayed

    2015-05-01

    A novel algorithm for estimating direction of arrival (DOAE) for target, which aspires to contribute to increase the estimation process accuracy and decrease the calculation costs, has been carried out. It has introduced time and space multiresolution in Estimation of Signal Parameter via Rotation Invariance Techniques (ESPRIT) method (TS-ESPRIT) to realize subspace approach that decreases errors caused by the model's nonlinearity effect. The efficacy of the proposed algorithm is verified by using Monte Carlo simulation, the DOAE accuracy has evaluated by closed-form Cramér-Rao bound (CRB) which reveals that the proposed algorithm's estimated results are better than those of the normal ESPRIT methods leading to the estimator performance enhancement.

  18. Nonlinear algorithm for task-specific tomosynthetic image reconstruction

    NASA Astrophysics Data System (ADS)

    Webber, Richard L.; Underhill, Hunter A.; Hemler, Paul F.; Lavery, John E.

    1999-05-01

    This investigation defines and tests a simple, nonlinear, task-specific method for rapid tomosynthetic reconstruction of radiographic images designed to allow an increase in specificity at the expense of sensitivity. Representative lumpectomy specimens containing cancer from human breasts were radiographed with a digital mammographic machine. Resulting projective data were processed to yield a series of tomosynthetic slices distributed throughout the breast. Five board-certified radiologists compared tomographic displays of these tissues processed both linearly (control) and nonlinearly (test) and ranked them in terms of their perceived interpretability. In another task, a different set of nine observers estimated the relative depths of six holes bored in a solid Lucite block as perceived when observed in three dimensions as a tomosynthesized series of test and control slices. All participants preferred the nonlinearly generated tomosynthetic mammograms to those produced conventionally, with or without subsequent deblurring by means of iterative deconvolution. The result was similar (p less than 0.015) when the hole-depth experiment was performed objectively. We therefore conclude for certain tasks that are unduly compromised by tomosynthetic blurring, the nonlinear tomosynthetic reconstruction method described here may improve diagnostic performance with a negligible increase in cost or complexity.

  19. Probabilistic structural analysis algorithm development for computational efficiency

    NASA Technical Reports Server (NTRS)

    Wu, Y.-T.

    1991-01-01

    The PSAM (Probabilistic Structural Analysis Methods) program is developing a probabilistic structural risk assessment capability for the SSME components. An advanced probabilistic structural analysis software system, NESSUS (Numerical Evaluation of Stochastic Structures Under Stress), is being developed as part of the PSAM effort to accurately simulate stochastic structures operating under severe random loading conditions. One of the challenges in developing the NESSUS system is the development of the probabilistic algorithms that provide both efficiency and accuracy. The main probability algorithms developed and implemented in the NESSUS system are efficient, but approximate in nature. In the last six years, the algorithms have improved very significantly.

  20. Motion Cueing Algorithm Development: Piloted Performance Testing of the Cueing Algorithms

    NASA Technical Reports Server (NTRS)

    Houck, Jacob A. (Technical Monitor); Telban, Robert J.; Cardullo, Frank M.; Kelly, Lon C.

    2005-01-01

    The relative effectiveness in simulating aircraft maneuvers with both current and newly developed motion cueing algorithms was assessed with an eleven-subject piloted performance evaluation conducted on the NASA Langley Visual Motion Simulator (VMS). In addition to the current NASA adaptive algorithm, two new cueing algorithms were evaluated: the optimal algorithm and the nonlinear algorithm. The test maneuvers included a straight-in approach with a rotating wind vector, an offset approach with severe turbulence and an on/off lateral gust that occurs as the aircraft approaches the runway threshold, and a takeoff both with and without engine failure after liftoff. The maneuvers were executed with each cueing algorithm with added visual display delay conditions ranging from zero to 200 msec. Two methods, the quasi-objective NASA Task Load Index (TLX), and power spectral density analysis of pilot control, were used to assess pilot workload. Piloted performance parameters for the approach maneuvers, the vertical velocity upon touchdown and the runway touchdown position, were also analyzed but did not show any noticeable difference among the cueing algorithms. TLX analysis reveals, in most cases, less workload and variation among pilots with the nonlinear algorithm. Control input analysis shows pilot-induced oscillations on a straight-in approach were less prevalent compared to the optimal algorithm. The augmented turbulence cues increased workload on an offset approach that the pilots deemed more realistic compared to the NASA adaptive algorithm. The takeoff with engine failure showed the least roll activity for the nonlinear algorithm, with the least rudder pedal activity for the optimal algorithm.

  1. User Interface Technology for Formal Specification Development

    NASA Technical Reports Server (NTRS)

    Lowry, Michael; Philpot, Andrew; Pressburger, Thomas; Underwood, Ian; Lum, Henry, Jr. (Technical Monitor)

    1994-01-01

    Formal specification development and modification are an essential component of the knowledge-based software life cycle. User interface technology is needed to empower end-users to create their own formal specifications. This paper describes the advanced user interface for AMPHION1 a knowledge-based software engineering system that targets scientific subroutine libraries. AMPHION is a generic, domain-independent architecture that is specialized to an application domain through a declarative domain theory. Formal specification development and reuse is made accessible to end-users through an intuitive graphical interface that provides semantic guidance in creating diagrams denoting formal specifications in an application domain. The diagrams also serve to document the specifications. Automatic deductive program synthesis ensures that end-user specifications are correctly implemented. The tables that drive AMPHION's user interface are automatically compiled from a domain theory; portions of the interface can be customized by the end-user. The user interface facilitates formal specification development by hiding syntactic details, such as logical notation. It also turns some of the barriers for end-user specification development associated with strongly typed formal languages into active sources of guidance, without restricting advanced users. The interface is especially suited for specification modification. AMPHION has been applied to the domain of solar system kinematics through the development of a declarative domain theory. Testing over six months with planetary scientists indicates that AMPHION's interactive specification acquisition paradigm enables users to develop, modify, and reuse specifications at least an order of magnitude more rapidly than manual program development.

  2. Development of a genetic algorithm for molecular scale catalyst design

    SciTech Connect

    McLeod, A.S.; Gladden, L.F.; Johnston, M.E.

    1997-04-01

    A genetic algorithm has been developed to determine the optimal design of a two-component catalyst for the diffusion-limited A + B AB{up_arrow} reaction in which each species is adsorbed specifically on one of two types of sites. Optimization of the distribution of catalytic sites on the surface is achieved by means of an evolutionary algorithm which repeatedly selects the more active surfaces from a population of possible solutions leading to a gradual improvement in the activity of the catalyst surface. A Monte Carlo simulation is used to determine the activity of each of the catalyst surfaces. It is found that for a reacting mixture composed of equal amounts of each component the optimal active site distribution is that of a checkerboard, this solution being approximately 25% more active than a random site distribution. Study of a range of reactant compositions has shown the optimal distribution of catalytically active sites to be dependent on the composition of the ratio of A to B in the reacting mixture. The potential for application of the optimization method introduced here to other catalysts systems is discussed. 27 refs., 7 figs.

  3. Advances in fracture algorithm development in GRIM

    NASA Astrophysics Data System (ADS)

    Cullis, I.; Church, P.; Greenwood, P.; Huntington-Thresher, W.; Reynolds, M.

    2003-09-01

    The numerical treatment of fracture processes has long been a major challenge in any hydrocode, but has been particularly acute in Eulerian Hydrocodes. This is due to the difficulties in establishing a consistent process for treating failure and the post failure treatment, which is complicated by advection, mixed cell and interface issues, particularly post failure. This alone increase the complexity of incorporating and validating a failure model compared to a Lagrange hydrocode, where the numerical treatment is much simpler. This paper outlines recent significant progress in the incorporation of fracture models in GRIM and the advection of damage across cell boundaries within the mesh. This has allowed a much more robust treatment of fracture in an Eulerian frame of reference and has greatly expanded the scope of tractable dynamic fracture scenarios. The progress has been possible due to a careful integration of the fracture algorithm within the numerical integration scheme to maintain a consistent representation of the physics. The paper describes various applications, which demonstrate the robustness and efficiency of the scheme and highlight some of the future challenges.

  4. Stoffenmanager exposure model: development of a quantitative algorithm.

    PubMed

    Tielemans, Erik; Noy, Dook; Schinkel, Jody; Heussen, Henri; Van Der Schaaf, Doeke; West, John; Fransman, Wouter

    2008-08-01

    In The Netherlands, the web-based tool called 'Stoffenmanager' was initially developed to assist small- and medium-sized enterprises to prioritize and control risks of handling chemical products in their workplaces. The aim of the present study was to explore the accuracy of the Stoffenmanager exposure algorithm. This was done by comparing its semi-quantitative exposure rankings for specific substances with exposure measurements collected from several occupational settings to derive a quantitative exposure algorithm. Exposure data were collected using two strategies. First, we conducted seven surveys specifically for validation of the Stoffenmanager. Second, existing occupational exposure data sets were collected from various sources. This resulted in 378 and 320 measurements for solid and liquid scenarios, respectively. The Spearman correlation coefficients between Stoffenmanager scores and exposure measurements appeared to be good for handling solids (r(s) = 0.80, N = 378, P < 0.0001) and liquid scenarios (r(s) = 0.83, N = 320, P < 0.0001). However, the correlation for liquid scenarios appeared to be lower when calculated separately for sets of volatile substances with a vapour pressure >10 Pa (r(s) = 0.56, N = 104, P < 0.0001) and non-volatile substances with a vapour pressure < or =10 Pa (r(s) = 0.53, N = 216, P < 0.0001). The mixed-effect regression models with natural log-transformed Stoffenmanager scores as independent parameter explained a substantial part of the total exposure variability (52% for solid scenarios and 76% for liquid scenarios). Notwithstanding the good correlation, the data show substantial variability in exposure measurements given a certain Stoffenmanager score. The overall performance increases our confidence in the use of the Stoffenmanager as a generic tool for risk assessment. The mixed-effect regression models presented in this paper may be used for assessment of so-called reasonable worst case exposures. This evaluation is

  5. Developer Tools for Evaluating Multi-Objective Algorithms

    NASA Technical Reports Server (NTRS)

    Giuliano, Mark E.; Johnston, Mark D.

    2011-01-01

    Multi-objective algorithms for scheduling offer many advantages over the more conventional single objective approach. By keeping user objectives separate instead of combined, more information is available to the end user to make trade-offs between competing objectives. Unlike single objective algorithms, which produce a single solution, multi-objective algorithms produce a set of solutions, called a Pareto surface, where no solution is strictly dominated by another solution for all objectives. From the end-user perspective a Pareto-surface provides a tool for reasoning about trade-offs between competing objectives. From the perspective of a software developer multi-objective algorithms provide an additional challenge. How can you tell if one multi-objective algorithm is better than another? This paper presents formal and visual tools for evaluating multi-objective algorithms and shows how the developer process of selecting an algorithm parallels the end-user process of selecting a solution for execution out of the Pareto-Surface.

  6. Development and Evaluation of Algorithms for Breath Alcohol Screening

    PubMed Central

    Ljungblad, Jonas; Hök, Bertil; Ekström, Mikael

    2016-01-01

    Breath alcohol screening is important for traffic safety, access control and other areas of health promotion. A family of sensor devices useful for these purposes is being developed and evaluated. This paper is focusing on algorithms for the determination of breath alcohol concentration in diluted breath samples using carbon dioxide to compensate for the dilution. The examined algorithms make use of signal averaging, weighting and personalization to reduce estimation errors. Evaluation has been performed by using data from a previously conducted human study. It is concluded that these features in combination will significantly reduce the random error compared to the signal averaging algorithm taken alone. PMID:27043576

  7. Development and Evaluation of Algorithms for Breath Alcohol Screening.

    PubMed

    Ljungblad, Jonas; Hök, Bertil; Ekström, Mikael

    2016-01-01

    Breath alcohol screening is important for traffic safety, access control and other areas of health promotion. A family of sensor devices useful for these purposes is being developed and evaluated. This paper is focusing on algorithms for the determination of breath alcohol concentration in diluted breath samples using carbon dioxide to compensate for the dilution. The examined algorithms make use of signal averaging, weighting and personalization to reduce estimation errors. Evaluation has been performed by using data from a previously conducted human study. It is concluded that these features in combination will significantly reduce the random error compared to the signal averaging algorithm taken alone. PMID:27043576

  8. Developing A Navier-Stokes Algorithm For Supercomputers

    NASA Technical Reports Server (NTRS)

    Swisshelm, Julie M.

    1992-01-01

    Report discusses development of algorithm for solution of Navier-Stokes equations of flow on parallel-processing supercomputers. Involves combination of prior techniques to form algorithm to compute flows in complicated three-dimensional configurations. Includes explicit finite-difference numerical-integration scheme applicable to flows represented by hierarchy of mathematical models ranging from Euler to full Navier-Stokes. Of interest to researchers looking for ways to structure problems for greater computational efficiency.

  9. Algorithm development for Maxwell's equations for computational electromagnetism

    NASA Technical Reports Server (NTRS)

    Goorjian, Peter M.

    1990-01-01

    A new algorithm has been developed for solving Maxwell's equations for the electromagnetic field. It solves the equations in the time domain with central, finite differences. The time advancement is performed implicitly, using an alternating direction implicit procedure. The space discretization is performed with finite volumes, using curvilinear coordinates with electromagnetic components along those directions. Sample calculations are presented of scattering from a metal pin, a square and a circle to demonstrate the capabilities of the new algorithm.

  10. AeroADL: applying the integration of the Suomi-NPP science algorithms with the Algorithm Development Library to the calibration and validation task

    NASA Astrophysics Data System (ADS)

    Houchin, J. S.

    2014-09-01

    A common problem for the off-line validation of the calibration algorithms and algorithm coefficients is being able to run science data through the exact same software used for on-line calibration of that data. The Joint Polar Satellite System (JPSS) program solved part of this problem by making the Algorithm Development Library (ADL) available, which allows the operational algorithm code to be compiled and run on a desktop Linux workstation using flat file input and output. However, this solved only part of the problem, as the toolkit and methods to initiate the processing of data through the algorithms were geared specifically toward the algorithm developer, not the calibration analyst. In algorithm development mode, a limited number of sets of test data are staged for the algorithm once, and then run through the algorithm over and over as the software is developed and debugged. In calibration analyst mode, we are continually running new data sets through the algorithm, which requires significant effort to stage each of those data sets for the algorithm without additional tools. AeroADL solves this second problem by providing a set of scripts that wrap the ADL tools, providing both efficient means to stage and process an input data set, to override static calibration coefficient look-up-tables (LUT) with experimental versions of those tables, and to manage a library containing multiple versions of each of the static LUT files in such a way that the correct set of LUTs required for each algorithm are automatically provided to the algorithm without analyst effort. Using AeroADL, The Aerospace Corporation's analyst team has demonstrated the ability to quickly and efficiently perform analysis tasks for both the VIIRS and OMPS sensors with minimal training on the software tools.

  11. Infrared Algorithm Development for Ocean Observations with EOS/MODIS

    NASA Technical Reports Server (NTRS)

    Brown, Otis B.

    1997-01-01

    Efforts continue under this contract to develop algorithms for the computation of sea surface temperature (SST) from MODIS infrared measurements. This effort includes radiative transfer modeling, comparison of in situ and satellite observations, development and evaluation of processing and networking methodologies for algorithm computation and data accession, evaluation of surface validation approaches for IR radiances, development of experimental instrumentation, and participation in MODIS (project) related activities. Activities in this contract period have focused on radiative transfer modeling, evaluation of atmospheric correction methodologies, undertake field campaigns, analysis of field data, and participation in MODIS meetings.

  12. System development of the Screwworm Eradication Data System (SEDS) algorithm

    NASA Technical Reports Server (NTRS)

    Arp, G.; Forsberg, F.; Giddings, L.; Phinney, D.

    1976-01-01

    The use of remotely sensed data is reported in the eradication of the screwworm and in the study of the role of the weather in the activity and development of the screwworm fly. As a result, the Screwworm Eradication Data System (SEDS) algorithm was developed.

  13. Development and Testing of Data Mining Algorithms for Earth Observation

    NASA Technical Reports Server (NTRS)

    Glymour, Clark

    2005-01-01

    The new algorithms developed under this project included a principled procedure for classification of objects, events or circumstances according to a target variable when a very large number of potential predictor variables is available but the number of cases that can be used for training a classifier is relatively small. These "high dimensional" problems require finding a minimal set of variables -called the Markov Blanket-- sufficient for predicting the value of the target variable. An algorithm, the Markov Blanket Fan Search, was developed, implemented and tested on both simulated and real data in conjunction with a graphical model classifier, which was also implemented. Another algorithm developed and implemented in TETRAD IV for time series elaborated on work by C. Granger and N. Swanson, which in turn exploited some of our earlier work. The algorithms in question learn a linear time series model from data. Given such a time series, the simultaneous residual covariances, after factoring out time dependencies, may provide information about causal processes that occur more rapidly than the time series representation allow, so called simultaneous or contemporaneous causal processes. Working with A. Monetta, a graduate student from Italy, we produced the correct statistics for estimating the contemporaneous causal structure from time series data using the TETRAD IV suite of algorithms. Two economists, David Bessler and Kevin Hoover, have independently published applications using TETRAD style algorithms to the same purpose. These implementations and algorithmic developments were separately used in two kinds of studies of climate data: Short time series of geographically proximate climate variables predicting agricultural effects in California, and longer duration climate measurements of temperature teleconnections.

  14. Development and Validation of a Polar Cloud Algorithm for CERES

    NASA Technical Reports Server (NTRS)

    1999-01-01

    The objectives of this project, as described in the original proposal, were to develop an algorithm for diagnosing cloud properties over snow- and ice-covered surfaces, particularly at night, using satellite radiances from the Advanced Very High Resolution Radiometer (AVHRR) and High-resolution Infrared Radiation Sounder (HIRS) sensors. Products from this algorithm include a cloud mask and additional cloud properties such as cloud phase, amount, and height. The SIVIS software package, developed as a part of the CERES project, was originally the primary tool used to develop the algorithm, but as it is no longer supported we have had to pursue a new tool to enable the combination and analysis of collocated radiances from AVHRR and HIRS. This turned out to be a much larger endeavor than we expected, but we now have the data sets collocated (with many thanks to B. Baum for the fundamental code) and we have developed a nighttime cloud detection algorithm. Using this algorithm we have also computed realistic-looking cloud fractions from AVHRR brightness temperatures. A method to identify cloud phase has also been implemented. Atmospheric information from the TIROS Operational Vertical Sounder (TOVS) Polar Pathfinder Data Set, which includes temperature and moisture profiles as well as surface information, provides information required for determining cloud-top height.

  15. Algorithm To Architecture Mapping Model (ATAMM) multicomputer operating system functional specification

    NASA Technical Reports Server (NTRS)

    Mielke, R.; Stoughton, J.; Som, S.; Obando, R.; Malekpour, M.; Mandala, B.

    1990-01-01

    A functional description of the ATAMM Multicomputer Operating System is presented. ATAMM (Algorithm to Architecture Mapping Model) is a marked graph model which describes the implementation of large grained, decomposed algorithms on data flow architectures. AMOS, the ATAMM Multicomputer Operating System, is an operating system which implements the ATAMM rules. A first generation version of AMOS which was developed for the Advanced Development Module (ADM) is described. A second generation version of AMOS being developed for the Generic VHSIC Spaceborne Computer (GVSC) is also presented.

  16. [Development of domain specific search engines].

    PubMed

    Takai, T; Tokunaga, M; Maeda, K; Kaminuma, T

    2000-01-01

    As cyber space exploding in a pace that nobody has ever imagined, it becomes very important to search cyber space efficiently and effectively. One solution to this problem is search engines. Already a lot of commercial search engines have been put on the market. However these search engines respond with such cumbersome results that domain specific experts can not tolerate. Using a dedicate hardware and a commercial software called OpenText, we have tried to develop several domain specific search engines. These engines are for our institute's Web contents, drugs, chemical safety, endocrine disruptors, and emergent response for chemical hazard. These engines have been on our Web site for testing.

  17. Infrared algorithm development for ocean observations with EOS/MODIS

    NASA Technical Reports Server (NTRS)

    Brown, Otis B.

    1994-01-01

    Efforts continue under this contract to develop algorithms for the computation of sea surface temperature (SST) from MODIS infrared retrievals. This effort includes radiative transfer modeling, comparison of in situ and satellite observations, development and evaluation of processing and networking methodologies for algorithm computation and data accession, evaluation of surface validation approaches for IR radiances, and participation in MODIS (project) related activities. Efforts in this contract period have focused on radiative transfer modeling and evaluation of atmospheric path radiance efforts on SST estimation, exploration of involvement in ongoing field studies, evaluation of new computer networking strategies, and objective analysis approaches.

  18. On the development of protein pKa calculation algorithms

    SciTech Connect

    Carstensen, Tommy; Farrell, Damien; Huang, Yong; Baker, Nathan A.; Nielsen, Jens E.

    2011-12-01

    Protein pKa calculation algorithms are typically developed to reproduce experimental pKa values and provide us with a better understanding of the fundamental importance of electrostatics for protein structure and function. However, the approximations and adjustable parameters employed in almost all pKa calculation methods means that there is the risk that pKa calculation algorithms are 'over-fitted' to the available datasets, and that these methods therefore do not model protein physics realistically. We employ simulations of the protein pKa calculation algorithm development process to show that careful optimization procedures and non-biased experimental datasets must be applied to ensure a realistic description of the underlying physical terms. We furthermore investigate the effect of experimental noise and find a significant effect on the pKa calculation algorithm optimization landscape. Finally, we comment on strategies for ensuring the physical realism of protein pKa calculation algorithms and we assess the overall state of the field with a view to predicting future directions of development.

  19. Development of High Specific Strength Envelope Materials

    NASA Astrophysics Data System (ADS)

    Komatsu, Keiji; Sano, Masa-Aki; Kakuta, Yoshiaki

    Progress in materials technology has produced a much more durable synthetic fabric envelope for the non-rigid airship. Flexible materials are required to form airship envelopes, ballonets, load curtains, gas bags and covering rigid structures. Polybenzoxazole fiber (Zylon) and polyalirate fiber (Vectran) show high specific tensile strength, so that we developed membrane using these high specific tensile strength fibers as a load carrier. The main material developed is a Zylon or Vectran load carrier sealed internally with a polyurethane bonded inner gas retention film (EVOH). The external surface provides weather protecting with, for instance, a titanium oxide integrated polyurethane or Tedlar film. The mechanical test results show that tensile strength 1,000 N/cm is attained with weight less than 230g/m2. In addition to the mechanical properties, temperature dependence of the joint strength and solar absorptivity and emissivity of the surface are measured. 

  20. Scheduling language and algorithm development study. Appendix: Study approach and activity summary

    NASA Technical Reports Server (NTRS)

    1974-01-01

    The approach and organization of the study to develop a high level computer programming language and a program library are presented. The algorithm and problem modeling analyses are summarized. The approach used to identify and specify the capabilities required in the basic language is described. Results of the analyses used to define specifications for the scheduling module library are presented.

  1. Development and Application of a Portable Health Algorithms Test System

    NASA Technical Reports Server (NTRS)

    Melcher, Kevin J.; Fulton, Christopher E.; Maul, William A.; Sowers, T. Shane

    2007-01-01

    This paper describes the development and initial demonstration of a Portable Health Algorithms Test (PHALT) System that is being developed by researchers at the NASA Glenn Research Center (GRC). The PHALT System was conceived as a means of evolving the maturity and credibility of algorithms developed to assess the health of aerospace systems. Comprising an integrated hardware-software environment, the PHALT System allows systems health management algorithms to be developed in a graphical programming environment; to be tested and refined using system simulation or test data playback; and finally, to be evaluated in a real-time hardware-in-the-loop mode with a live test article. In this paper, PHALT System development is described through the presentation of a functional architecture, followed by the selection and integration of hardware and software. Also described is an initial real-time hardware-in-the-loop demonstration that used sensor data qualification algorithms to diagnose and isolate simulated sensor failures in a prototype Power Distribution Unit test-bed. Success of the initial demonstration is highlighted by the correct detection of all sensor failures and the absence of any real-time constraint violations.

  2. Development of an Algorithm to Classify Colonoscopy Indication from Coded Health Care Data

    PubMed Central

    Adams, Kenneth F.; Johnson, Eric A.; Chubak, Jessica; Kamineni, Aruna; Doubeni, Chyke A.; Buist, Diana S.M.; Williams, Andrew E.; Weinmann, Sheila; Doria-Rose, V. Paul; Rutter, Carolyn M.

    2015-01-01

    Introduction: Electronic health data are potentially valuable resources for evaluating colonoscopy screening utilization and effectiveness. The ability to distinguish screening colonoscopies from exams performed for other purposes is critical for research that examines factors related to screening uptake and adherence, and the impact of screening on patient outcomes, but distinguishing between these indications in secondary health data proves challenging. The objective of this study is to develop a new and more accurate algorithm for identification of screening colonoscopies using electronic health data. Methods: Data from a case-control study of colorectal cancer with adjudicated colonoscopy indication was used to develop logistic regression-based algorithms. The proposed algorithms predict the probability that a colonoscopy was indicated for screening, with variables selected for inclusion in the models using the Least Absolute Shrinkage and Selection Operator (LASSO). Results: The algorithms had excellent classification accuracy in internal validation. The primary, restricted model had AUC= 0.94, sensitivity=0.91, and specificity=0.82. The secondary, extended model had AUC=0.96, sensitivity=0.88, and specificity=0.90. Discussion: The LASSO approach enabled estimation of parsimonious algorithms that identified screening colonoscopies with high accuracy in our study population. External validation is needed to replicate these results and to explore the performance of these algorithms in other settings. PMID:26290883

  3. Using Hypertext To Develop an Algorithmic Approach to Teaching Statistics.

    ERIC Educational Resources Information Center

    Halavin, James; Sommer, Charles

    Hypertext and its more advanced form Hypermedia represent a powerful authoring tool with great potential for allowing statistics teachers to develop documents to assist students in an algorithmic fashion. An introduction to the use of Hypertext is presented, with an example of its use. Hypertext is an approach to information management in which…

  4. Development, Comparisons and Evaluation of Aerosol Retrieval Algorithms

    NASA Astrophysics Data System (ADS)

    de Leeuw, G.; Holzer-Popp, T.; Aerosol-cci Team

    2011-12-01

    The Climate Change Initiative (cci) of the European Space Agency (ESA) has brought together a team of European Aerosol retrieval groups working on the development and improvement of aerosol retrieval algorithms. The goal of this cooperation is the development of methods to provide the best possible information on climate and climate change based on satellite observations. To achieve this, algorithms are characterized in detail as regards the retrieval approaches, the aerosol models used in each algorithm, cloud detection and surface treatment. A round-robin intercomparison of results from the various participating algorithms serves to identify the best modules or combinations of modules for each sensor. Annual global datasets including their uncertainties will then be produced and validated. The project builds on 9 existing algorithms to produce spectral aerosol optical depth (AOD and Ångström exponent) as well as other aerosol information; two instruments are included to provide the absorbing aerosol index (AAI) and stratospheric aerosol information. The algorithms included are: - 3 for ATSR (ORAC developed by RAL / Oxford university, ADV developed by FMI and the SU algorithm developed by Swansea University ) - 2 for MERIS (BAER by Bremen university and the ESA standard handled by HYGEOS) - 1 for POLDER over ocean (LOA) - 1 for synergetic retrieval (SYNAER by DLR ) - 1 for OMI retreival of the absorbing aerosol index with averaging kernel information (KNMI) - 1 for GOMOS stratospheric extinction profile retrieval (BIRA) The first seven algorithms aim at the retrieval of the AOD. However, each of the algorithms used differ in their approach, even for algorithms working with the same instrument such as ATSR or MERIS. To analyse the strengths and weaknesses of each algorithm several tests are made. The starting point for comparison and measurement of improvements is a retrieval run for 1 month, September 2008. The data from the same month are subsequently used for

  5. Algorithm integration using ADL (Algorithm Development Library) for improving CrIMSS EDR science product quality

    NASA Astrophysics Data System (ADS)

    Das, B.; Wilson, M.; Divakarla, M. G.; Chen, W.; Barnet, C.; Wolf, W.

    2013-05-01

    Algorithm Development Library (ADL) is a framework that mimics the operational system IDPS (Interface Data Processing Segment) that is currently being used to process data from instruments aboard Suomi National Polar-orbiting Partnership (S-NPP) satellite. The satellite was launched successfully in October 2011. The Cross-track Infrared and Microwave Sounder Suite (CrIMSS) consists of the Advanced Technology Microwave Sounder (ATMS) and Cross-track Infrared Sounder (CrIS) instruments that are on-board of S-NPP. These instruments will also be on-board of JPSS (Joint Polar Satellite System) that will be launched in early 2017. The primary products of the CrIMSS Environmental Data Record (EDR) include global atmospheric vertical temperature, moisture, and pressure profiles (AVTP, AVMP and AVPP) and Ozone IP (Intermediate Product from CrIS radiances). Several algorithm updates have recently been proposed by CrIMSS scientists that include fixes to the handling of forward modeling errors, a more conservative identification of clear scenes, indexing corrections for daytime products, and relaxed constraints between surface temperature and air temperature for daytime land scenes. We have integrated these improvements into the ADL framework. This work compares the results from ADL emulation of future IDPS system incorporating all the suggested algorithm updates with the current official processing results by qualitative and quantitative evaluations. The results prove these algorithm updates improve science product quality.

  6. EUV mask process specifics and development challenges

    NASA Astrophysics Data System (ADS)

    Nesladek, Pavel

    2014-07-01

    EUV lithography is currently the favorite and most promising candidate among the next generation lithography (NGL) technologies. Decade ago the NGL was supposed to be used for 45 nm technology node. Due to introduction of immersion 193nm lithography, double/triple patterning and further techniques, the 193 nm lithography capabilities was greatly improved, so it is expected to be used successfully depending on business decision of the end user down to 10 nm logic. Subsequent technology node will require EUV or DSA alternative technology. Manufacturing and especially process development for EUV technology requires significant number of unique processes, in several cases performed at dedicated tools. Currently several of these tools as e.g. EUV AIMS or actinic reflectometer are not available on site yet. The process development is done using external services /tools with impact on the single unit process development timeline and the uncertainty of the process performance estimation, therefore compromises in process development, caused by assumption about similarities between optical and EUV mask made in experiment planning and omitting of tests are further reasons for challenges to unit process development. Increased defect risk and uncertainty in process qualification are just two examples, which can impact mask quality / process development. The aim of this paper is to identify critical aspects of the EUV mask manufacturing with respect to defects on the mask with focus on mask cleaning and defect repair and discuss the impact of the EUV specific requirements on the experiments needed.

  7. Development and application of unified algorithms for problems in computational science

    NASA Technical Reports Server (NTRS)

    Shankar, Vijaya; Chakravarthy, Sukumar

    1987-01-01

    A framework is presented for developing computationally unified numerical algorithms for solving nonlinear equations that arise in modeling various problems in mathematical physics. The concept of computational unification is an attempt to encompass efficient solution procedures for computing various nonlinear phenomena that may occur in a given problem. For example, in Computational Fluid Dynamics (CFD), a unified algorithm will be one that allows for solutions to subsonic (elliptic), transonic (mixed elliptic-hyperbolic), and supersonic (hyperbolic) flows for both steady and unsteady problems. The objectives are: development of superior unified algorithms emphasizing accuracy and efficiency aspects; development of codes based on selected algorithms leading to validation; application of mature codes to realistic problems; and extension/application of CFD-based algorithms to problems in other areas of mathematical physics. The ultimate objective is to achieve integration of multidisciplinary technologies to enhance synergism in the design process through computational simulation. Specific unified algorithms for a hierarchy of gas dynamics equations and their applications to two other areas: electromagnetic scattering, and laser-materials interaction accounting for melting.

  8. Task Specificity in Early Oral Motor Development

    PubMed Central

    Wilson, Erin M.; Green, Jordan R.; Yunusova, Yana Y.; Moore, Christopher A.

    2009-01-01

    This article addresses a long-standing clinical and theoretical debate regarding the potential relationship between speech and nonspeech behaviors in the developing system. The review is motivated by the high popularity of nonspeech oral motor exercises (NSOMEs), including alimentary behaviors such as chewing, in the treatment of speech disorders in young children. The similarities and differences in the behavioral characteristics, sensory requirements, and task goals for speech and nonspeech oromotor behaviors are compared. Integrated theoretical paradigms and empirical data on the development of early oromotor behaviors are discussed. Although the efficacy of NSOMEs remains empirically untested at this time, studies of typical developmental speech physiology fail to support a theoretical framework promoting the use of NSOMEs. Well-designed empirical studies are necessary, however, to establish the efficacy of NSOMEs for specific clinical population and treatment targets. PMID:19058112

  9. Datasets for radiation network algorithm development and testing

    SciTech Connect

    Rao, Nageswara S; Sen, Satyabrata; Berry, M. L..; Wu, Qishi; Grieme, M.; Brooks, Richard R; Cordone, G.

    2016-01-01

    Domestic Nuclear Detection Office s (DNDO) Intelligence Radiation Sensors Systems (IRSS) program supported the development of networks of commercial-off-the-shelf (COTS) radiation counters for detecting, localizing, and identifying low-level radiation sources. Under this program, a series of indoor and outdoor tests were conducted with multiple source strengths and types, different background profiles, and various types of source and detector movements. Following the tests, network algorithms were replayed in various re-constructed scenarios using sub-networks. These measurements and algorithm traces together provide a rich collection of highly valuable datasets for testing the current and next generation radiation network algorithms, including the ones (to be) developed by broader R&D communities such as distributed detection, information fusion, and sensor networks. From this multiple TeraByte IRSS database, we distilled out and packaged the first batch of canonical datasets for public release. They include measurements from ten indoor and two outdoor tests which represent increasingly challenging baseline scenarios for robustly testing radiation network algorithms.

  10. Developing and Implementing the Data Mining Algorithms in RAVEN

    SciTech Connect

    Sen, Ramazan Sonat; Maljovec, Daniel Patrick; Alfonsi, Andrea; Rabiti, Cristian

    2015-09-01

    The RAVEN code is becoming a comprehensive tool to perform probabilistic risk assessment, uncertainty quantification, and verification and validation. The RAVEN code is being developed to support many programs and to provide a set of methodologies and algorithms for advanced analysis. Scientific computer codes can generate enormous amounts of data. To post-process and analyze such data might, in some cases, take longer than the initial software runtime. Data mining algorithms/methods help in recognizing and understanding patterns in the data, and thus discover knowledge in databases. The methodologies used in the dynamic probabilistic risk assessment or in uncertainty and error quantification analysis couple system/physics codes with simulation controller codes, such as RAVEN. RAVEN introduces both deterministic and stochastic elements into the simulation while the system/physics code model the dynamics deterministically. A typical analysis is performed by sampling values of a set of parameter values. A major challenge in using dynamic probabilistic risk assessment or uncertainty and error quantification analysis for a complex system is to analyze the large number of scenarios generated. Data mining techniques are typically used to better organize and understand data, i.e. recognizing patterns in the data. This report focuses on development and implementation of Application Programming Interfaces (APIs) for different data mining algorithms, and the application of these algorithms to different databases.

  11. Development of microwave rainfall retrieval algorithm for climate applications

    NASA Astrophysics Data System (ADS)

    KIM, J. H.; Shin, D. B.

    2014-12-01

    With the accumulated satellite datasets for decades, it is possible that satellite-based data could contribute to sustained climate applications. Level-3 products from microwave sensors for climate applications can be obtained from several algorithms. For examples, the Microwave Emission brightness Temperature Histogram (METH) algorithm produces level-3 rainfalls directly, whereas the Goddard profiling (GPROF) algorithm first generates instantaneous rainfalls and then temporal and spatial averaging process leads to level-3 products. The rainfall algorithm developed in this study follows a similar approach to averaging instantaneous rainfalls. However, the algorithm is designed to produce instantaneous rainfalls at an optimal resolution showing reduced non-linearity in brightness temperature (TB)-rain rate(R) relations. It is found that the resolution tends to effectively utilize emission channels whose footprints are relatively larger than those of scattering channels. This algorithm is mainly composed of a-priori databases (DBs) and a Bayesian inversion module. The DB contains massive pairs of simulated microwave TBs and rain rates, obtained by WRF (version 3.4) and RTTOV (version 11.1) simulations. To improve the accuracy and efficiency of retrieval process, data mining technique is additionally considered. The entire DB is classified into eight types based on Köppen climate classification criteria using reanalysis data. Among these sub-DBs, only one sub-DB which presents the most similar physical characteristics is selected by considering the thermodynamics of input data. When the Bayesian inversion is applied to the selected DB, instantaneous rain rate with 6 hours interval is retrieved. The retrieved monthly mean rainfalls are statistically compared with CMAP and GPCP, respectively.

  12. Oscillation Detection Algorithm Development Summary Report and Test Plan

    SciTech Connect

    Zhou, Ning; Huang, Zhenyu; Tuffner, Francis K.; Jin, Shuangshuang

    2009-10-03

    Small signal stability problems are one of the major threats to grid stability and reliability in California and the western U.S. power grid. An unstable oscillatory mode can cause large-amplitude oscillations and may result in system breakup and large-scale blackouts. There have been several incidents of system-wide oscillations. Of them, the most notable is the August 10, 1996 western system breakup produced as a result of undamped system-wide oscillations. There is a great need for real-time monitoring of small-signal oscillations in the system. In power systems, a small-signal oscillation is the result of poor electromechanical damping. Considerable understanding and literature have been developed on the small-signal stability problem over the past 50+ years. These studies have been mainly based on a linearized system model and eigenvalue analysis of its characteristic matrix. However, its practical feasibility is greatly limited as power system models have been found inadequate in describing real-time operating conditions. Significant efforts have been devoted to monitoring system oscillatory behaviors from real-time measurements in the past 20 years. The deployment of phasor measurement units (PMU) provides high-precision time-synchronized data needed for estimating oscillation modes. Measurement-based modal analysis, also known as ModeMeter, uses real-time phasor measure-ments to estimate system oscillation modes and their damping. Low damping indicates potential system stability issues. Oscillation alarms can be issued when the power system is lightly damped. A good oscillation alarm tool can provide time for operators to take remedial reaction and reduce the probability of a system breakup as a result of a light damping condition. Real-time oscillation monitoring requires ModeMeter algorithms to have the capability to work with various kinds of measurements: disturbance data (ringdown signals), noise probing data, and ambient data. Several measurement

  13. Implementation on Landsat Data of a Simple Cloud Mask Algorithm Developed for MODIS Land Bands

    NASA Technical Reports Server (NTRS)

    Oreopoulos, Lazaros; Wilson, Michael J.; Varnai, Tamas

    2010-01-01

    This letter assesses the performance on Landsat-7 images of a modified version of a cloud masking algorithm originally developed for clear-sky compositing of Moderate Resolution Imaging Spectroradiometer (MODIS) images at northern mid-latitudes. While data from recent Landsat missions include measurements at thermal wavelengths, and such measurements are also planned for the next mission, thermal tests are not included in the suggested algorithm in its present form to maintain greater versatility and ease of use. To evaluate the masking algorithm we take advantage of the availability of manual (visual) cloud masks developed at USGS for the collection of Landsat scenes used here. As part of our evaluation we also include the Automated Cloud Cover Assesment (ACCA) algorithm that includes thermal tests and is used operationally by the Landsat-7 mission to provide scene cloud fractions, but no cloud masks. We show that the suggested algorithm can perform about as well as ACCA both in terms of scene cloud fraction and pixel-level cloud identification. Specifically, we find that the algorithm gives an error of 1.3% for the scene cloud fraction of 156 scenes, and a root mean square error of 7.2%, while it agrees with the manual mask for 93% of the pixels, figures very similar to those from ACCA (1.2%, 7.1%, 93.7%).

  14. A rib-specific multimodal registration algorithm for fused unfolded rib visualization using PET/CT

    NASA Astrophysics Data System (ADS)

    Kaftan, Jens N.; Kopaczka, Marcin; Wimmer, Andreas; Platsch, Günther; Declerck, Jérôme

    2014-03-01

    Respiratory motion affects the alignment of PET and CT volumes from PET/CT examinations in a non-rigid manner. This becomes particularly apparent if reviewing fine anatomical structures such as ribs when assessing bone metastases, which frequently occur in many advanced cancers. To make this routine diagnostic task more efficient, a fused unfolded rib visualization for 18F-NaF PET/CT is presented. It allows to review the whole rib cage in a single image. This advanced visualization is enabled by a novel rib-specific registration algorithm that rigidly optimizes the local alignment of each individual rib in both modalities based on a matched filter response function. More specifically, rib centerlines are automatically extracted from CT and subsequently individually aligned to the corresponding bone-specific PET rib uptake pattern. The proposed method has been validated on 20 PET/CT scans acquired at different clinical sites. It has been demonstrated that the presented rib- specific registration method significantly improves the rib alignment without having to run complex deformable registration algorithms. At the same time, it guarantees that rib lesions are not further deformed, which may otherwise affect quantitative measurements such as SUVs. Considering clinically relevant distance thresholds, the centerline portion with good alignment compared to the ground truth improved from 60:6% to 86:7% after registration while approximately 98% can be still considered as acceptably aligned.

  15. Development and specification of GABAergic cortical interneurons

    PubMed Central

    2013-01-01

    GABAergic interneurons are inhibitory neurons of the nervous system that play a vital role in neural circuitry and activity. They are so named due to their release of the neurotransmitter gamma-aminobutyric acid (GABA), and occupy different areas of the brain. This review will focus primarily on GABAergic interneurons of the mammalian cerebral cortex from a developmental standpoint. There is a diverse amount of cortical interneuronal subtypes that may be categorized by a number of characteristics; this review will classify them largely by the protein markers they express. The developmental origins of GABAergic interneurons will be discussed, as well as factors that influence the complex migration routes that these interneurons must take in order to ultimately localize in the cerebral cortex where they will integrate with the neural circuitry set in place. This review will also place an emphasis on the transcriptional network of genes that play a role in the specification and maintenance of GABAergic interneuron fate. Gaining an understanding of the different aspects of cortical interneuron development and specification, especially in humans, has many useful clinical applications that may serve to treat various neurological disorders linked to alterations in interneuron populations. PMID:23618463

  16. Development of a biomimetic robotic fish and its control algorithm.

    PubMed

    Yu, Junzhi; Tan, Min; Wang, Shuo; Chen, Erkui

    2004-08-01

    This paper is concerned with the design of a robotic fish and its motion control algorithms. A radio-controlled, four-link biomimetic robotic fish is developed using a flexible posterior body and an oscillating foil as a propeller. The swimming speed of the robotic fish is adjusted by modulating joint's oscillating frequency, and its orientation is tuned by different joint's deflections. Since the motion control of a robotic fish involves both hydrodynamics of the fluid environment and dynamics of the robot, it is very difficult to establish a precise mathematical model employing purely analytical methods. Therefore, the fish's motion control task is decomposed into two control systems. The online speed control implements a hybrid control strategy and a proportional-integral-derivative (PID) control algorithm. The orientation control system is based on a fuzzy logic controller. In our experiments, a point-to-point (PTP) control algorithm is implemented and an overhead vision system is adopted to provide real-time visual feedback. The experimental results confirm the effectiveness of the proposed algorithms.

  17. Development of antibiotic regimens using graph based evolutionary algorithms.

    PubMed

    Corns, Steven M; Ashlock, Daniel A; Bryden, Kenneth M

    2013-12-01

    This paper examines the use of evolutionary algorithms in the development of antibiotic regimens given to production animals. A model is constructed that combines the lifespan of the animal and the bacteria living in the animal's gastro-intestinal tract from the early finishing stage until the animal reaches market weight. This model is used as the fitness evaluation for a set of graph based evolutionary algorithms to assess the impact of diversity control on the evolving antibiotic regimens. The graph based evolutionary algorithms have two objectives: to find an antibiotic treatment regimen that maintains the weight gain and health benefits of antibiotic use and to reduce the risk of spreading antibiotic resistant bacteria. This study examines different regimens of tylosin phosphate use on bacteria populations divided into Gram positive and Gram negative types, with a focus on Campylobacter spp. Treatment regimens were found that provided decreased antibiotic resistance relative to conventional methods while providing nearly the same benefits as conventional antibiotic regimes. By using a graph to control the information flow in the evolutionary algorithm, a variety of solutions along the Pareto front can be found automatically for this and other multi-objective problems.

  18. Data inversion algorithm development for the hologen occultation experiment

    NASA Technical Reports Server (NTRS)

    Gordley, Larry L.; Mlynczak, Martin G.

    1986-01-01

    The successful retrieval of atmospheric parameters from radiometric measurement requires not only the ability to do ideal radiometric calculations, but also a detailed understanding of instrument characteristics. Therefore a considerable amount of time was spent in instrument characterization in the form of test data analysis and mathematical formulation. Analyses of solar-to-reference interference (electrical cross-talk), detector nonuniformity, instrument balance error, electronic filter time-constants and noise character were conducted. A second area of effort was the development of techniques for the ideal radiometric calculations required for the Halogen Occultation Experiment (HALOE) data reduction. The computer code for these calculations must be extremely complex and fast. A scheme for meeting these requirements was defined and the algorithms needed form implementation are currently under development. A third area of work included consulting on the implementation of the Emissivity Growth Approximation (EGA) method of absorption calculation into a HALOE broadband radiometer channel retrieval algorithm.

  19. SMMR Simulator radiative transfer calibration model. 2: Algorithm development

    NASA Technical Reports Server (NTRS)

    Link, S.; Calhoon, C.; Krupp, B.

    1980-01-01

    Passive microwave measurements performed from Earth orbit can be used to provide global data on a wide range of geophysical and meteorological phenomena. A Scanning Multichannel Microwave Radiometer (SMMR) is being flown on the Nimbus-G satellite. The SMMR Simulator duplicates the frequency bands utilized in the spacecraft instruments through an amalgamate of radiometer systems. The algorithm developed utilizes data from the fall 1978 NASA CV-990 Nimbus-G underflight test series and subsequent laboratory testing.

  20. Development of an Inverse Algorithm for Resonance Inspection

    SciTech Connect

    Lai, Canhai; Xu, Wei; Sun, Xin

    2012-10-01

    Resonance inspection (RI), which employs the natural frequency spectra shift between the good and the anomalous part populations to detect defects, is a non-destructive evaluation (NDE) technique with many advantages such as low inspection cost, high testing speed, and broad applicability to structures with complex geometry compared to other contemporary NDE methods. It has already been widely used in the automobile industry for quality inspections of safety critical parts. Unlike some conventionally used NDE methods, the current RI technology is unable to provide details, i.e. location, dimension, or types, of the flaws for the discrepant parts. Such limitation severely hinders its wide spread applications and further development. In this study, an inverse RI algorithm based on maximum correlation function is proposed to quantify the location and size of flaws for a discrepant part. A dog-bone shaped stainless steel sample with and without controlled flaws are used for algorithm development and validation. The results show that multiple flaws can be accurately pinpointed back using the algorithms developed, and the prediction accuracy decreases with increasing flaw numbers and decreasing distance between flaws.

  1. Domain Specificity and Variability in Cognitive Development.

    ERIC Educational Resources Information Center

    Gelman, Rochel

    2000-01-01

    Maintains that there are core-specific and non-core-specific domains of knowledge, but that only the core-specific domains benefit from innate skeletal structures. Asserts that core skeletal domains are universally shared, even though their particular foci may vary. Emphasizes that individuals vary in terms of the noncore domains they acquire.…

  2. Chance of Vulnerability Reduction in Application-Specific NoC through Distance Aware Mapping Algorithm

    NASA Astrophysics Data System (ADS)

    Janidarmian, Majid; Fekr, Atena Roshan; Bokharaei, Vahhab Samadi

    2011-08-01

    Mapping algorithm which means which core should be linked to which router is one of the key issues in the design flow of network-on-chip. To achieve an application-specific NoC design procedure that minimizes the communication cost and improves the fault tolerant property, first a heuristic mapping algorithm that produces a set of different mappings in a reasonable time is presented. This algorithm allows the designers to identify the set of most promising solutions in a large design space, which has low communication costs while yielding optimum communication costs in some cases. Another evaluated parameter, vulnerability index, is then considered as a principle of estimating the fault-tolerance property in all produced mappings. Finally, in order to yield a mapping which considers trade-offs between these two parameters, a linear function is defined and introduced. It is also observed that more flexibility to prioritize solutions within the design space is possible by adjusting a set of if-then rules in fuzzy logic.

  3. A new training algorithm using artificial neural networks to classify gender-specific dynamic gait patterns.

    PubMed

    Andrade, Andre; Costa, Marcelo; Paolucci, Leopoldo; Braga, Antônio; Pires, Flavio; Ugrinowitsch, Herbert; Menzel, Hans-Joachim

    2015-01-01

    The aim of this study was to present a new training algorithm using artificial neural networks called multi-objective least absolute shrinkage and selection operator (MOBJ-LASSO) applied to the classification of dynamic gait patterns. The movement pattern is identified by 20 characteristics from the three components of the ground reaction force which are used as input information for the neural networks in gender-specific gait classification. The classification performance between MOBJ-LASSO (97.4%) and multi-objective algorithm (MOBJ) (97.1%) is similar, but the MOBJ-LASSO algorithm achieved more improved results than the MOBJ because it is able to eliminate the inputs and automatically select the parameters of the neural network. Thus, it is an effective tool for data mining using neural networks. From 20 inputs used for training, MOBJ-LASSO selected the first and second peaks of the vertical force and the force peak in the antero-posterior direction as the variables that classify the gait patterns of the different genders.

  4. Shared memory, cache, and frontwidth considerations in multifrontal algorithm development

    SciTech Connect

    Benner, R.E.

    1986-01-23

    A concurrent, multifrontal algorithm (Benner and Weigand 1986) for solution of finite element equations was modified to better use the cache and shared memories on the ELXSI 6400, and to achieve better load balancing between 'child' processes via frontwidth reduction. The changes were also tailored to use distributed memory machines efficiently by making most local to individual processors. The test code initially used 8 Mbytes of incached shared memory and 155 cp (concurrent processor) sec (a speedup of 1.4) when run on 4 processors. The changes left only 50 Kbytes of uncached, and 470 Kbytes of cached, shared memory, plus 530 Kbytes of data local to each 'child' process. Total cp time was reduced to 57 sec and speedup increased to 2.8 on 4 processors. Based on those results an addition to the ELXSI multitasking software, asynchronous I/O between processes, is proposed that would further decrease the shared memory requirements of the algorithm and make the ELXSI look like a distributed memory machine as far as algorithm development is concerned. This would make the ELXSI an extremely useful tool for further development of special-purpose, finite element computations. 16 refs., 8 tabs.

  5. Developing Information Power Grid Based Algorithms and Software

    NASA Technical Reports Server (NTRS)

    Dongarra, Jack

    1998-01-01

    This exploratory study initiated our effort to understand performance modeling on parallel systems. The basic goal of performance modeling is to understand and predict the performance of a computer program or set of programs on a computer system. Performance modeling has numerous applications, including evaluation of algorithms, optimization of code implementations, parallel library development, comparison of system architectures, parallel system design, and procurement of new systems. Our work lays the basis for the construction of parallel libraries that allow for the reconstruction of application codes on several distinct architectures so as to assure performance portability. Following our strategy, once the requirements of applications are well understood, one can then construct a library in a layered fashion. The top level of this library will consist of architecture-independent geometric, numerical, and symbolic algorithms that are needed by the sample of applications. These routines should be written in a language that is portable across the targeted architectures.

  6. The development of a whole-body algorithm

    NASA Technical Reports Server (NTRS)

    Kay, F. J.

    1973-01-01

    The whole-body algorithm is envisioned as a mathematical model that utilizes human physiology to simulate the behavior of vital body systems. The objective of this model is to determine the response of selected body parameters within these systems to various input perturbations, or stresses. Perturbations of interest are exercise, chemical unbalances, gravitational changes and other abnormal environmental conditions. This model provides for a study of man's physiological response in various space applications, underwater applications, normal and abnormal workloads and environments, and the functioning of the system with physical impairments or decay of functioning components. Many methods or approaches to the development of a whole-body algorithm are considered. Of foremost concern is the determination of the subsystems to be included, the detail of the subsystems and the interaction between the subsystems.

  7. Specificity and Sensitivity of Claims-Based Algorithms for Identifying Members of Medicare+Choice Health Plans That Have Chronic Medical Conditions

    PubMed Central

    Rector, Thomas S; Wickstrom, Steven L; Shah, Mona; Thomas Greeenlee, N; Rheault, Paula; Rogowski, Jeannette; Freedman, Vicki; Adams, John; Escarce, José J

    2004-01-01

    Objective To examine the effects of varying diagnostic and pharmaceutical criteria on the performance of claims-based algorithms for identifying beneficiaries with hypertension, heart failure, chronic lung disease, arthritis, glaucoma, and diabetes. Study Setting Secondary 1999–2000 data from two Medicare+Choice health plans. Study Design Retrospective analysis of algorithm specificity and sensitivity. Data Collection Physician, facility, and pharmacy claims data were extracted from electronic records for a sample of 3,633 continuously enrolled beneficiaries who responded to an independent survey that included questions about chronic diseases. Principal Findings Compared to an algorithm that required a single medical claim in a one-year period that listed the diagnosis, either requiring that the diagnosis be listed on two separate claims or that the diagnosis to be listed on one claim for a face-to-face encounter with a health care provider significantly increased specificity for the conditions studied by 0.03 to 0.11. Specificity of algorithms was significantly improved by 0.03 to 0.17 when both a medical claim with a diagnosis and a pharmacy claim for a medication commonly used to treat the condition were required. Sensitivity improved significantly by 0.01 to 0.20 when the algorithm relied on a medical claim with a diagnosis or a pharmacy claim, and by 0.05 to 0.17 when two years rather than one year of claims data were analyzed. Algorithms that had specificity more than 0.95 were found for all six conditions. Sensitivity above 0.90 was not achieved all conditions. Conclusions Varying claims criteria improved the performance of case-finding algorithms for six chronic conditions. Highly specific, and sometimes sensitive, algorithms for identifying members of health plans with several chronic conditions can be developed using claims data. PMID:15533190

  8. Accuracy of Optimized Branched Algorithms to Assess Activity-Specific PAEE

    PubMed Central

    Edwards, Andy G.; Hill, James O.; Byrnes, William C.; Browning, Raymond C.

    2009-01-01

    PURPOSE To assess the activity-specific accuracy achievable by branched algorithm (BA) analysis of simulated daily-living physical activity energy expenditure (PAEE) within a sedentary population. METHODS Sedentary men (n=8) and women (n=8) first performed a treadmill calibration protocol, during which heart rate (HR), accelerometry (ACC), and PAEE were measured in 1-minute epochs. From these data, HR-PAEE, and ACC-PAEE regressions were constructed and used in each of six analytic models to predict PAEE from ACC and HR data collected during a subsequent simulated daily-living protocol. Criterion PAEE was measured during both protocols via indirect calorimetry. The accuracy achieved by each model was assessed by the root mean square of the difference between model-predicted daily–living PAEE and the criterion daily-living PAEE (expressed here as % of mean daily living PAEE). RESULTS Across the range of activities an unconstrained post hoc optimized branched algorithm best predicted criterion PAEE. Estimates using individual calibration were generally more accurate than those using group calibration (14 vs. 16 % error, respectively). These analyses also performed well within each of the six daily-living activities, but systematic errors appeared for several of those activities, which may be explained by an inability of the algorithm to simultaneously accommodate a heterogeneous range of activities. Analyses of between mean square error by subject and activity suggest that optimization involving minimization of RMS for total daily-living PAEE is associated with decreased error between subjects but increased error between activities. CONCLUSION The performance of post hoc optimized branched algorithms may be limited by heterogeneity in the daily-living activities being performed. PMID:19952842

  9. International multidimensional authenticity specification (IMAS) algorithm for detection of commercial pomegranate juice adulteration.

    PubMed

    Zhang, Yanjun; Krueger, Dana; Durst, Robert; Lee, Rupo; Wang, David; Seeram, Navindra; Heber, David

    2009-03-25

    The pomegranate fruit ( Punica granatum ) has become an international high-value crop for the production of commercial pomegranate juice (PJ). The perceived consumer value of PJ is due in large part to its potential health benefits based on a significant body of medical research conducted with authentic PJ. To establish criteria for authenticating PJ, a new International Multidimensional Authenticity Specifications (IMAS) algorithm was developed through consideration of existing databases and comprehensive chemical characterization of 45 commercial juice samples from 23 different manufacturers in the United States. In addition to analysis of commercial juice samples obtained in the United States, data from other analyses of pomegranate juice and fruits including samples from Iran, Turkey, Azerbaijan, Syria, India, and China were considered in developing this protocol. There is universal agreement that the presence of a highly constant group of six anthocyanins together with punicalagins characterizes polyphenols in PJ. At a total sugar concentration of 16 degrees Brix, PJ contains characteristic sugars including mannitol at >0.3 g/100 mL. Ratios of glucose to mannitol of 4-15 and of glucose to fructose of 0.8-1.0 are also characteristic of PJ. In addition, no sucrose should be present because of isomerase activity during commercial processing. Stable isotope ratio mass spectrometry as > -25 per thousand assures that there is no added corn or cane sugar added to PJ. Sorbitol was present at <0.025 g/100 mL; maltose and tartaric acid were not detected. The presence of the amino acid proline at >25 mg/L is indicative of added grape products. Malic acid at >0.1 g/100 mL indicates adulteration with apple, pear, grape, cherry, plum, or aronia juice. Other adulteration methods include the addition of highly concentrated aronia, blueberry, or blackberry juices or natural grape pigments to poor-quality juices to imitate the color of pomegranate juice, which results in

  10. International multidimensional authenticity specification (IMAS) algorithm for detection of commercial pomegranate juice adulteration.

    PubMed

    Zhang, Yanjun; Krueger, Dana; Durst, Robert; Lee, Rupo; Wang, David; Seeram, Navindra; Heber, David

    2009-03-25

    The pomegranate fruit ( Punica granatum ) has become an international high-value crop for the production of commercial pomegranate juice (PJ). The perceived consumer value of PJ is due in large part to its potential health benefits based on a significant body of medical research conducted with authentic PJ. To establish criteria for authenticating PJ, a new International Multidimensional Authenticity Specifications (IMAS) algorithm was developed through consideration of existing databases and comprehensive chemical characterization of 45 commercial juice samples from 23 different manufacturers in the United States. In addition to analysis of commercial juice samples obtained in the United States, data from other analyses of pomegranate juice and fruits including samples from Iran, Turkey, Azerbaijan, Syria, India, and China were considered in developing this protocol. There is universal agreement that the presence of a highly constant group of six anthocyanins together with punicalagins characterizes polyphenols in PJ. At a total sugar concentration of 16 degrees Brix, PJ contains characteristic sugars including mannitol at >0.3 g/100 mL. Ratios of glucose to mannitol of 4-15 and of glucose to fructose of 0.8-1.0 are also characteristic of PJ. In addition, no sucrose should be present because of isomerase activity during commercial processing. Stable isotope ratio mass spectrometry as > -25 per thousand assures that there is no added corn or cane sugar added to PJ. Sorbitol was present at <0.025 g/100 mL; maltose and tartaric acid were not detected. The presence of the amino acid proline at >25 mg/L is indicative of added grape products. Malic acid at >0.1 g/100 mL indicates adulteration with apple, pear, grape, cherry, plum, or aronia juice. Other adulteration methods include the addition of highly concentrated aronia, blueberry, or blackberry juices or natural grape pigments to poor-quality juices to imitate the color of pomegranate juice, which results in

  11. Site-specific range uncertainties caused by dose calculation algorithms for proton therapy

    NASA Astrophysics Data System (ADS)

    Schuemann, J.; Dowdell, S.; Grassberger, C.; Min, C. H.; Paganetti, H.

    2014-08-01

    The purpose of this study was to assess the possibility of introducing site-specific range margins to replace current generic margins in proton therapy. Further, the goal was to study the potential of reducing margins with current analytical dose calculations methods. For this purpose we investigate the impact of complex patient geometries on the capability of analytical dose calculation algorithms to accurately predict the range of proton fields. Dose distributions predicted by an analytical pencil-beam algorithm were compared with those obtained using Monte Carlo (MC) simulations (TOPAS). A total of 508 passively scattered treatment fields were analyzed for seven disease sites (liver, prostate, breast, medulloblastoma-spine, medulloblastoma-whole brain, lung and head and neck). Voxel-by-voxel comparisons were performed on two-dimensional distal dose surfaces calculated by pencil-beam and MC algorithms to obtain the average range differences and root mean square deviation for each field for the distal position of the 90% dose level (R90) and the 50% dose level (R50). The average dose degradation of the distal falloff region, defined as the distance between the distal position of the 80% and 20% dose levels (R80-R20), was also analyzed. All ranges were calculated in water-equivalent distances. Considering total range uncertainties and uncertainties from dose calculation alone, we were able to deduce site-specific estimations. For liver, prostate and whole brain fields our results demonstrate that a reduction of currently used uncertainty margins is feasible even without introducing MC dose calculations. We recommend range margins of 2.8% + 1.2 mm for liver and prostate treatments and 3.1% + 1.2 mm for whole brain treatments, respectively. On the other hand, current margins seem to be insufficient for some breast, lung and head and neck patients, at least if used generically. If no case specific adjustments are applied, a generic margin of 6.3% + 1.2 mm would be

  12. Fuzzy logic algorithm to extract specific interaction forces from atomic force microscopy data

    NASA Astrophysics Data System (ADS)

    Kasas, Sandor; Riederer, Beat M.; Catsicas, Stefan; Cappella, Brunero; Dietler, Giovanni

    2000-05-01

    The atomic force microscope is not only a very convenient tool for studying the topography of different samples, but it can also be used to measure specific binding forces between molecules. For this purpose, one type of molecule is attached to the tip and the other one to the substrate. Approaching the tip to the substrate allows the molecules to bind together. Retracting the tip breaks the newly formed bond. The rupture of a specific bond appears in the force-distance curves as a spike from which the binding force can be deduced. In this article we present an algorithm to automatically process force-distance curves in order to obtain bond strength histograms. The algorithm is based on a fuzzy logic approach that permits an evaluation of "quality" for every event and makes the detection procedure much faster compared to a manual selection. In this article, the software has been applied to measure the binding strength between tubuline and microtubuline associated proteins.

  13. Collaborative workbench for cyberinfrastructure to accelerate science algorithm development

    NASA Astrophysics Data System (ADS)

    Ramachandran, R.; Maskey, M.; Kuo, K.; Lynnes, C.

    2013-12-01

    There are significant untapped resources for information and knowledge creation within the Earth Science community in the form of data, algorithms, services, analysis workflows or scripts, and the related knowledge about these resources. Despite the huge growth in social networking and collaboration platforms, these resources often reside on an investigator's workstation or laboratory and are rarely shared. A major reason for this is that there are very few scientific collaboration platforms, and those that exist typically require the use of a new set of analysis tools and paradigms to leverage the shared infrastructure. As a result, adoption of these collaborative platforms for science research is inhibited by the high cost to an individual scientist of switching from his or her own familiar environment and set of tools to a new environment and tool set. This presentation will describe an ongoing project developing an Earth Science Collaborative Workbench (CWB). The CWB approach will eliminate this barrier by augmenting a scientist's current research environment and tool set to allow him or her to easily share diverse data and algorithms. The CWB will leverage evolving technologies such as commodity computing and social networking to design an architecture for scalable collaboration that will support the emerging vision of an Earth Science Collaboratory. The CWB is being implemented on the robust and open source Eclipse framework and will be compatible with widely used scientific analysis tools such as IDL. The myScience Catalog built into CWB will capture and track metadata and provenance about data and algorithms for the researchers in a non-intrusive manner with minimal overhead. Seamless interfaces to multiple Cloud services will support sharing algorithms, data, and analysis results, as well as access to storage and computer resources. A Community Catalog will track the use of shared science artifacts and manage collaborations among researchers.

  14. Site-specific range uncertainties caused by dose calculation algorithms for proton therapy

    PubMed Central

    Schuemann, J.; Dowdell, S.; Grassberger, C.; Min, C. H.; Paganetti, H.

    2014-01-01

    The purpose of this study was to investigate the impact of complex patient geometries on the capability of analytical dose calculation algorithms to accurately predict the range of proton fields. Dose distributions predicted by an analytical pencil-beam algorithm were compared with those obtained using Monte Carlo simulations (TOPAS). A total of 508 passively scattered treatment fields were analyzed for 7 disease sites (liver, prostate, breast, medulloblastoma-spine, medulloblastoma-whole brain, lung and head & neck). Voxel-by-voxel comparisons were performed on two-dimensional distal dose surfaces calculated by pencil-beam and Monte Carlo algorithms to obtain the average range differences (ARD) and root mean square deviation (RMSD) for each field for the distal position of the 90% dose level (R90) and the 50% dose level (R50). The average dose degradation (ADD) of the distal falloff region, defined as the distance between the distal position of the 80% and 20% dose levels (R80-R20), was also analyzed. All ranges were calculated in water-equivalent distances. Considering total range uncertainties and uncertainties from dose calculation alone, we were able to deduce site-specific estimations. For liver, prostate and whole brain fields our results demonstrate that a reduction of currently used uncertainty margins is feasible even without introducing Monte Carlo dose calculations. We recommend range margins of 2.8% + 1.2 mm for liver and prostate treatments and 3.1% + 1.2 mm for whole brain treatments, respectively. On the other hand, current margins seem to be insufficient for some breast, lung and head & neck patients, at least if used generically. If no case specific adjustments are applied, a generic margin of 6.3% + 1.2 mm would be needed for breast, lung and head & neck treatments. We conclude that currently used generic range uncertainty margins in proton therapy should be redefined site specific and that complex geometries may require a field specific

  15. Automated coronary artery calcium scoring from non-contrast CT using a patient-specific algorithm

    NASA Astrophysics Data System (ADS)

    Ding, Xiaowei; Slomka, Piotr J.; Diaz-Zamudio, Mariana; Germano, Guido; Berman, Daniel S.; Terzopoulos, Demetri; Dey, Damini

    2015-03-01

    Non-contrast cardiac CT is used worldwide to assess coronary artery calcium (CAC), a subclinical marker of coronary atherosclerosis. Manual quantification of regional CAC scores includes identifying candidate regions, followed by thresholding and connected component labeling. We aimed to develop and validate a fully-automated, algorithm for both overall and regional measurement of CAC scores from non-contrast CT using a hybrid multi-atlas registration, active contours and knowledge-based region separation algorithm. A co-registered segmented CT atlas was created from manually segmented non-contrast CT data from 10 patients (5 men, 5 women) and stored offline. For each patient scan, the heart region, left ventricle, right ventricle, ascending aorta and aortic root are located by multi-atlas registration followed by active contours refinement. Regional coronary artery territories (left anterior descending artery, left circumflex artery and right coronary artery) are separated using a knowledge-based region separation algorithm. Calcifications from these coronary artery territories are detected by region growing at each lesion. Global and regional Agatston scores and volume scores were calculated in 50 patients. Agatston scores and volume scores calculated by the algorithm and the expert showed excellent correlation (Agatston score: r = 0.97, p < 0.0001, volume score: r = 0.97, p < 0.0001) with no significant differences by comparison of individual data points (Agatston score: p = 0.30, volume score: p = 0.33). The total time was <60 sec on a standard computer. Our results show that fast accurate and automated quantification of CAC scores from non-contrast CT is feasible.

  16. 2nd Generation ELT Performance Specification Development

    NASA Technical Reports Server (NTRS)

    Stimson, Chad M.

    2015-01-01

    NASA Search And Rescue is supporting RTCA SC-229 with research and recommendations for performance specifications for the 2nd generation of emergency locator transmitters. Areas for improvement and methods for collecting data will be presented.

  17. An effective algorithm for the generation of patient-specific Purkinje networks in computational electrocardiology

    NASA Astrophysics Data System (ADS)

    Palamara, Simone; Vergara, Christian; Faggiano, Elena; Nobile, Fabio

    2015-02-01

    The Purkinje network is responsible for the fast and coordinated distribution of the electrical impulse in the ventricle that triggers its contraction. Therefore, it is necessary to model its presence to obtain an accurate patient-specific model of the ventricular electrical activation. In this paper, we present an efficient algorithm for the generation of a patient-specific Purkinje network, driven by measures of the electrical activation acquired on the endocardium. The proposed method provides a correction of an initial network, generated by means of a fractal law, and it is based on the solution of Eikonal problems both in the muscle and in the Purkinje network. We present several numerical results both in an ideal geometry with synthetic data and in a real geometry with patient-specific clinical measures. These results highlight an improvement of the accuracy provided by the patient-specific Purkinje network with respect to the initial one. In particular, a cross-validation test shows an accuracy increase of 19% when only the 3% of the total points are used to generate the network, whereas an increment of 44% is observed when a random noise equal to 20% of the maximum value of the clinical data is added to the measures.

  18. Leadership development in the age of the algorithm.

    PubMed

    Buckingham, Marcus

    2012-06-01

    By now we expect personalized content--it's routinely served up by online retailers and news services, for example. But the typical leadership development program still takes a formulaic, one-size-fits-all approach. And it rarely happens that an excellent technique can be effectively transferred from one leader to all others. Someone trying to adopt a practice from a leader with a different style usually seems stilted and off--a Franken-leader. Breakthrough work at Hilton Hotels and other organizations shows how companies can use an algorithmic model to deliver training tips uniquely suited to each individual's style. It's a five-step process: First, a company must choose a tool with which to identify each person's leadership type. Second, it should assess its best leaders, and third, it should interview them about their techniques. Fourth, it should use its algorithmic model to feed tips drawn from those techniques to developing leaders of the same type. And fifth, it should make the system dynamically intelligent, with user reactions sharpening the content and targeting of tips. The power of this kind of system--highly customized, based on peer-to-peer sharing, and continually evolving--will soon overturn the generic model of leadership development. And such systems will inevitably break through any one organization, until somewhere in the cloud the best leadership tips from all over are gathered, sorted, and distributed according to which ones suit which people best.

  19. Leadership development in the age of the algorithm.

    PubMed

    Buckingham, Marcus

    2012-06-01

    By now we expect personalized content--it's routinely served up by online retailers and news services, for example. But the typical leadership development program still takes a formulaic, one-size-fits-all approach. And it rarely happens that an excellent technique can be effectively transferred from one leader to all others. Someone trying to adopt a practice from a leader with a different style usually seems stilted and off--a Franken-leader. Breakthrough work at Hilton Hotels and other organizations shows how companies can use an algorithmic model to deliver training tips uniquely suited to each individual's style. It's a five-step process: First, a company must choose a tool with which to identify each person's leadership type. Second, it should assess its best leaders, and third, it should interview them about their techniques. Fourth, it should use its algorithmic model to feed tips drawn from those techniques to developing leaders of the same type. And fifth, it should make the system dynamically intelligent, with user reactions sharpening the content and targeting of tips. The power of this kind of system--highly customized, based on peer-to-peer sharing, and continually evolving--will soon overturn the generic model of leadership development. And such systems will inevitably break through any one organization, until somewhere in the cloud the best leadership tips from all over are gathered, sorted, and distributed according to which ones suit which people best. PMID:22741421

  20. The development of solution algorithms for compressible flows

    NASA Astrophysics Data System (ADS)

    Slack, David Christopher

    Three main topics were examined. The first is the development and comparison of time integration schemes on 2-D unstructured meshes. Both explicit and implicit solution grids are presented. Cell centered and cell vertex finite volume upwind schemes using Roe's approximate Riemann solver are developed. The second topic involves an interactive adaptive remeshing algorithm which uses a frontal grid generator and is compared to a single grid calculation. The final topic examined is the capabilities developed for a structured 3-D code called GASP. The capabilities include: generalized chemistry and thermodynamic modeling, space marching, memory management through the use of binary C I/O, and algebraic and two equation eddy viscosity turbulence modeling. Results are given for Mach 1.7 3-D analytic forebody, a Mach 1.38 axisymmetric nozzle with hydrogen-air combustion, a Mach 14.15 deg ramp, and Mach 0.3 viscous flow over a flat plate.

  1. On the importance of FIB-SEM specific segmentation algorithms for porous media

    SciTech Connect

    Salzer, Martin; Thiele, Simon; Zengerle, Roland; Schmidt, Volker

    2014-09-15

    A new algorithmic approach to segmentation of highly porous three dimensional image data gained by focused ion beam tomography is described which extends the key-principle of local threshold backpropagation described in Salzer et al. (2012). The technique of focused ion beam tomography has shown to be capable of imaging the microstructure of functional materials. In order to perform a quantitative analysis on the corresponding microstructure a segmentation task needs to be performed. However, algorithmic segmentation of images obtained with focused ion beam tomography is a challenging problem for highly porous materials if filling the pore phase, e.g. with epoxy resin, is difficult. The gray intensities of individual voxels are not sufficient to determine the phase represented by them and usual thresholding methods are not applicable. We thus propose a new approach to segmentation that pays respect to the specifics of the imaging process of focused ion beam tomography. As an application of our approach, the segmentation of three dimensional images for a cathode material used in polymer electrolyte membrane fuel cells is discussed. We show that our approach preserves significantly more of the original nanostructure than a thresholding approach. - Highlights: • We describe a new approach to the segmentation of FIB-SEM images of porous media. • The first and last occurrences of structures are detected by analysing the z-profiles. • The algorithm is validated by comparing it to a manual segmentation. • The new approach shows significantly less artifacts than a thresholding approach. • A structural analysis also shows improved results for the obtained microstructure.

  2. The McCollough Facial Rejuvenation System: expanding the scope of a condition-specific algorithm.

    PubMed

    McCollough, E Gaylon; Ha, Chi D

    2012-02-01

    The ideal facial rejuvenation algorithm is comprised of an appropriate combination of procedures, thoughtfully chosen from an assortment of reliable alternatives, that when skillfully performed provide both short- and long-term enhancement to the undesirable conditions of aging that exists at the time of treatment. In 2010, the senior author published the first scientific article in which a condition-specific classification system and a treatment plan algorithm were applied to the discipline of facial rejuvenation. In the landmark article, the senior author reviewed his surgical experience of more than 5000 face-lifts and grouped patients into five major categories (or stages), based upon the extent of aging identified in various regions of the face and neck and the procedures performed to correct them. The criteria (that have now been suggested on a facial aging worksheet) were recorded in a data blank comprised of a first-generation worksheet. Once the data were collected--and using algorithmic charts for each region and/or facial feature--the most appropriate plan of action for a given patient was created. The sole objective in sharing the senior author's methodology was to launch a scholarly discussion among physicians and surgeons involved in the various disciplines that provide rejuvenation procedures on the face, head, and neck. From such a debate would, hopefully, emerge a definitive algorithmic system--one based squarely on the venerable ethics of medicine, coupled with the appropriate application of and skillful performance of the fundamental principles of surgery. A single, science-based system would restore order to a noble discipline, currently being challenged by narcissism, gimmickry, and commercialization. The implementation of a system rooted in universal truths would require its advocates to agree upon a common "language," the implementation of which allows aesthetically focused surgeons to share both new ideas and time-tested experiences. More

  3. Project Development Specification for Special Protective Coating

    SciTech Connect

    MCGREW, D.L.

    2000-09-28

    Establishes the performance, design development, and test requirements for the Special Protective Coating. The system engineering approach was used to develop this document in accordance with the guidelines laid out in the Systems Engineering Management Plan for Project W-314.

  4. Application of a Modified Garbage Code Algorithm to Estimate Cause-Specific Mortality and Years of Life Lost in Korea

    PubMed Central

    2016-01-01

    Years of life lost (YLLs) are estimated based on mortality and cause of death (CoD); therefore, it is necessary to accurately calculate CoD to estimate the burden of disease. The garbage code algorithm was developed by the Global Burden of Disease (GBD) Study to redistribute inaccurate CoD and enhance the validity of CoD estimation. This study aimed to estimate cause-specific mortality rates and YLLs in Korea by applying a modified garbage code algorithm. CoD data for 2010–2012 were used to calculate the number of deaths. The garbage code algorithm was then applied to calculate target cause (i.e., valid CoD) and adjusted CoD using the garbage code redistribution. The results showed that garbage code deaths accounted for approximately 25% of all CoD during 2010–2012. In 2012, lung cancer contributed the most to cause-specific death according to the Statistics Korea. However, when CoD was adjusted using the garbage code redistribution, ischemic heart disease was the most common CoD. Furthermore, before garbage code redistribution, self-harm contributed the most YLLs followed by lung cancer and liver cancer; however, after application of the garbage code redistribution, though self-harm was the most common leading cause of YLL, it is followed by ischemic heart disease and lung cancer. Our results showed that garbage code deaths accounted for a substantial amount of mortality and YLLs. The results may enhance our knowledge of burden of disease and help prioritize intervention settings by changing the relative importance of burden of disease. PMID:27775249

  5. Neural Networks algorithm development for polarimetric observations of above cloud aerosols (ACA)

    NASA Astrophysics Data System (ADS)

    Segal-Rosenhaimer, M.; Knobelspiesse, K. D.; Redemann, J.

    2015-12-01

    The direct and indirect radiative effects of above clouds aerosols (ACA) are still highly uncertain in current climate assessments. Much of this uncertainty is observational as most orbital remote sensing algorithms were not designed to simultaneously retrieve aerosol and cloud optical properties. Recently, several algorithms have been developed to infer ACA loading and properties using passive, single view angle instruments (OMI, MODIS). Yet, these are not operational and still require rigorous validation. Multiangle polarimetric instruments like POLDER, and RSP show promise for detection and quantification of ACA. However, the retrieval methods for polarimetric measurements entail some drawbacks such as assuming homogeneity of the underlying cloud field for POLDER and retrieved cloud effective radii as an input into RSP scheme. In addition, these methods require computationally expensive RT calculations, which precludes real-time polarimetric data analysis during field campaigns. Here we describe the development of a new algorithm to retrieve atmospheric aerosol and cloud optical properties from observations by polarimetrically sensitive instruments using Neural Networks (NN), which are computationally efficient and fast enough to produce results in the field. This algorithm is specific for ACA, and developed primarily to support the ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) campaign, which will acquire measurements of ACA in the South-East Atlantic Ocean during episodes of absorbing aerosols above Stratocumulus cloud decks in 2016-18. The algorithm will use a trained NN scheme for concurrent cloud and aerosol microphysical property retrievals that will be input to optimal estimation method. We will discuss the overall retrieval scheme, focusing on the input variables. Specifically, we use principle component analysis (PCA) to examine the information content available to describe the simulated cloud scenes (with adequate noise

  6. Development of Deterministic Disaggregation Algorithm for Remotely Sensed Soil Moisture Products

    NASA Astrophysics Data System (ADS)

    Shin, Y.; Mohanty, B. P.

    2011-12-01

    Soil moisture near the land surface and in the subsurface profile is an important issue for hydrology, agronomy, and meteorology. Soil moisture data are limited in the spatial and temporal scales. Till now, point-scaled soil moisture measurements representing regional scales are available. Remote sensing (RS) scheme can be an alternative to direct measurement. However, the availability of RS datasets has a limitation due to the scale discrepancy between the RS resolution and local-scale. A number of studies have been conducted to develop downscaling/disaggregation algorithm for extracting fine-scaled soil moisture within a remote sensing product using the stochastic methods. The stochastic downscaling/disaggregation schemes provide us only for soil texture information and sub-area fractions contained in a RS pixel indicating that their specific locations are not recognized. Thus, we developed the deterministic disaggregation algorithm (DDA) with a genetic algorithm (GA) adapting the inverse method for extracting/searching soil textures and their specific location of sub-pixels within a RS soil moisture product under the numerical experiments and field validations. This approach performs quite well in disaggregating/recognizing the soil textures and their specific locations within a RS soil moisture footprint compared to the results of stochastic method. On the basis of these findings, we can suggest that the DDA can be useful for improving the availability of RS products.

  7. Specificity, Transfer, and the Development of Expertise

    ERIC Educational Resources Information Center

    Brookes, David T.; Ross, Brian H.; Mestre, Jose P.

    2011-01-01

    In this paper we present the results of two experiments designed to understand how physics students' learning of the concept of refraction is influenced by the cognitive phenomenon of "specificity." In both experiments participants learned why light bends as it travels from one optical medium to another with an analogy made to a car driving from…

  8. Developing the Instructional Specification. Monograph Number 12.

    ERIC Educational Resources Information Center

    Gerlach, Vernon S.; And Others

    Analysis of a film script that makes the learner identify and distinguish between statements of observation and statements of inference leads an instructor (or other program writer) step by step through the processes of preparing an instructional specification--a blue-print for preparing powerful self-instructional materials. There are four parts…

  9. An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis.

    PubMed

    Kapp, Eugene A; Schütz, Frédéric; Connolly, Lisa M; Chakel, John A; Meza, Jose E; Miller, Christine A; Fenyo, David; Eng, Jimmy K; Adkins, Joshua N; Omenn, Gilbert S; Simpson, Richard J

    2005-08-01

    MS/MS and associated database search algorithms are essential proteomic tools for identifying peptides. Due to their widespread use, it is now time to perform a systematic analysis of the various algorithms currently in use. Using blood specimens used in the HUPO Plasma Proteome Project, we have evaluated five search algorithms with respect to their sensitivity and specificity, and have also accurately benchmarked them based on specified false-positive (FP) rates. Spectrum Mill and SEQUEST performed well in terms of sensitivity, but were inferior to MASCOT, X!Tandem, and Sonar in terms of specificity. Overall, MASCOT, a probabilistic search algorithm, correctly identified most peptides based on a specified FP rate. The rescoring algorithm, PeptideProphet, enhanced the overall performance of the SEQUEST algorithm, as well as provided predictable FP error rates. Ideally, score thresholds should be calculated for each peptide spectrum or minimally, derived from a reversed-sequence search as demonstrated in this study based on a validated data set. The availability of open-source search algorithms, such as X!Tandem, makes it feasible to further improve the validation process (manual or automatic) on the basis of "consensus scoring", i.e., the use of multiple (at least two) search algorithms to reduce the number of FPs. complement.

  10. An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and Specificity analysis.

    SciTech Connect

    Kapp, Eugene; Schutz, Frederick; Connolly, Lisa M.; Chakel, John A.; Meza, Jose E.; Miller, Christine A.; Fenyo, David; Eng, Jimmy K.; Adkins, Joshua N.; Omenn, Gilbert; Simpson, Richard

    2005-08-01

    MS/MS and associated database search algorithms are essential proteomic tools for identifying peptides. Due to their widespread use, it is now time to perform a systematic analysis of the various algorithms currently in use. Using blood specimens used in the HUPO Plasma Proteome Project, we have evaluated five search algorithms with respect to their sensitivity and specificity, and have also accurately benchmarked them based on specified false-positive (FP) rates. Spectrum Mill and SEQUEST performed well in terms of sensitivity, but were inferior to MASCOT, X-Tandem, and Sonar in terms of specificity. Overall, MASCOT, a probabilistic search algorithm, correctly identified most peptides based on a specified FP rate. The rescoring algorithm, Peptide Prophet, enhanced the overall performance of the SEQUEST algorithm, as well as provided predictable FP error rates. Ideally, score thresholds should be calculated for each peptide spectrum or minimally, derived from a reversed-sequence search as demonstrated in this study based on a validated data set. The availability of open-source search algorithms, such as X-Tandem, makes it feasible to further improve the validation process (manual or automatic) on the basis of ''consensus scoring'', i.e., the use of multiple (at least two) search algorithms to reduce the number of FPs. complement.

  11. DEVELOPMENT OF MONOSODIUM TITANATE (MST) PURCHASE SPECIFICATIONS

    SciTech Connect

    Hobbs, D

    2006-04-30

    Savannah River National Laboratory (SRNL) evaluated the previous monosodium titanate (MST) purchase specifications for particle size and strontium decontamination factor. Based on the measured particle size and filtration performance characteristics of several MST samples with simulated waste solutions and various filter membranes we recommend changing the particle size specification as follows. The recommended specification varies with the size and manufacturer of the filter membrane as shown below. We recommend that future batches of MST received at SRS be tested for particle size and filtration performance. This will increase the available database and provide increased confidence that particle size parameters are an accurate prediction of filtration performance. Testing demonstrated the feasibility of a non-radiochemical method for evaluating strontium removal performance of MST samples. Using this analytical methodology we recommend that the purchase specification include the requirement that the MST exhibits a strontium DF factor of >1.79 upon contact with a simulated waste solution with composition as reported for simulated waste solution SWS-7-2005-1 in Table 1 and containing 5.2 to 5.7 mg L{sup -1} strontium with 0.1 g L{sup -1} of the MST. We also recommend performing additional tests with these simulants and MST samples and, if available, new MST samples, to determine the reproducibility and increase the available database for the measurements by the ICP-ES instrument. These measurements will provide increased confidence that the non-radiological method provides a reliable method for evaluating the strontium and actinide removal performance for MST samples.

  12. Advanced three-dimensional Eulerian hydrodynamic algorithm development

    SciTech Connect

    Rider, W.J.; Kothe, D.B.; Mosso, S.

    1998-11-01

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The purpose of this project is to investigate, implement, and evaluate algorithms that have high potential for improving the robustness, fidelity and accuracy of three-dimensional Eulerian hydrodynamic simulations. Eulerian computations are necessary to simulate a number of important physical phenomena ranging from the molding process for metal parts to nuclear weapons safety issues to astrophysical phenomena such as that associated with a Type 2 supernovae. A number of algorithmic issues were explored in the course of this research including interface/volume tracking, surface physics integration, high resolution integration techniques, multilevel iterative methods, multimaterial hydrodynamics and coupling radiation with hydrodynamics. This project combines core strengths of several Laboratory divisions. The project has high institutional benefit given the renewed emphasis on numerical simulations in Science-Based Stockpile Stewardship and the Accelerated Strategic Computing Initiative and LANL`s tactical goals related to high performance computing and simulation.

  13. A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury

    PubMed Central

    Overby, Casey Lynnette; Pathak, Jyotishman; Gottesman, Omri; Haerian, Krystl; Perotte, Adler; Murphy, Sean; Bruce, Kevin; Johnson, Stephanie; Talwalkar, Jayant; Shen, Yufeng; Ellis, Steve; Kullo, Iftikhar; Chute, Christopher; Friedman, Carol; Bottinger, Erwin; Hripcsak, George; Weng, Chunhua

    2013-01-01

    Objective To describe a collaborative approach for developing an electronic health record (EHR) phenotyping algorithm for drug-induced liver injury (DILI). Methods We analyzed types and causes of differences in DILI case definitions provided by two institutions—Columbia University and Mayo Clinic; harmonized two EHR phenotyping algorithms; and assessed the performance, measured by sensitivity, specificity, positive predictive value, and negative predictive value, of the resulting algorithm at three institutions except that sensitivity was measured only at Columbia University. Results Although these sites had the same case definition, their phenotyping methods differed by selection of liver injury diagnoses, inclusion of drugs cited in DILI cases, laboratory tests assessed, laboratory thresholds for liver injury, exclusion criteria, and approaches to validating phenotypes. We reached consensus on a DILI phenotyping algorithm and implemented it at three institutions. The algorithm was adapted locally to account for differences in populations and data access. Implementations collectively yielded 117 algorithm-selected cases and 23 confirmed true positive cases. Discussion Phenotyping for rare conditions benefits significantly from pooling data across institutions. Despite the heterogeneity of EHRs and varied algorithm implementations, we demonstrated the portability of this algorithm across three institutions. The performance of this algorithm for identifying DILI was comparable with other computerized approaches to identify adverse drug events. Conclusions Phenotyping algorithms developed for rare and complex conditions are likely to require adaptive implementation at multiple institutions. Better approaches are also needed to share algorithms. Early agreement on goals, data sources, and validation methods may improve the portability of the algorithms. PMID:23837993

  14. Evolution and Development of Effective Feedstock Specifications

    SciTech Connect

    Garold Gresham; Rachel Emerson; Amber Hoover; Amber Miller; William Bauer; Kevin Kenney

    2013-09-01

    The U.S. Department of Energy promotes the production of a range of liquid fuels and fuel blend stocks from lignocellulosic biomass feedstocks by funding fundamental and applied research that advances the state of technology in biomass collection, conversion, and sustainability. As part of its involvement in this program, the Idaho National Laboratory (INL) investigates the feedstock logistics economics and sustainability of these fuels. The 2012 feedstock logistics milestone demonstrated that for high-yield areas that minimize the transportation distances of a low-density, unstable biomass, we could achieve a delivered cost of $35/ton. Based on current conventional equipment and processes, the 2012 logistics design is able to deliver the volume of biomass needed to fulfill the 2012 Renewable Fuel Standard’s targets for ethanol. However, the Renewable Fuel Standard’s volume targets are continuing to increase and are expected to peak in 2022 at 36 billion gallons. Meeting these volume targets and achieving a national-scale biofuels industry will require expansion of production capacity beyond the 2012 Conventional Feedstock Supply Design Case to access diverse available feedstocks, regardless of their inherent ability to meet preliminary biorefinery quality feedstock specifications. Implementation of quality specifications (specs), as outlined in the 2017 Design Case – “Feedstock Supply System Design and Economics for Conversion of Lignocellulosic Biomass to Hydrocarbon Fuels” (in progress), requires insertion of deliberate, active quality controls into the feedstock supply chain, whereas the 2012 Conventional Design only utilizes passive quality controls.

  15. Sensitivity of snow density and specific surface area measured by microtomography to different image processing algorithms

    NASA Astrophysics Data System (ADS)

    Hagenmuller, Pascal; Matzl, Margret; Chambon, Guillaume; Schneebeli, Martin

    2016-05-01

    Microtomography can measure the X-ray attenuation coefficient in a 3-D volume of snow with a spatial resolution of a few microns. In order to extract quantitative characteristics of the microstructure, such as the specific surface area (SSA), from these data, the greyscale image first needs to be segmented into a binary image of ice and air. Different numerical algorithms can then be used to compute the surface area of the binary image. In this paper, we report on the effect of commonly used segmentation and surface area computation techniques on the evaluation of density and specific surface area. The evaluation is based on a set of 38 X-ray tomographies of different snow samples without impregnation, scanned with an effective voxel size of 10 and 18 μm. We found that different surface area computation methods can induce relative variations up to 5 % in the density and SSA values. Regarding segmentation, similar results were obtained by sequential and energy-based approaches, provided the associated parameters were correctly chosen. The voxel size also appears to affect the values of density and SSA, but because images with the higher resolution also show the higher noise level, it was not possible to draw a definitive conclusion on this effect of resolution.

  16. Site-specific development plan: Carlin, Nevada

    SciTech Connect

    Fiore, J.H.

    1980-01-01

    The conditions for developing the geothermal resource near Carlin appear favorable. The resource has a favorable temperature range for direct applications (174/sup 0/F or 79/sup 0/C), the geothermal fluid has low total dissolved solids, no objectionable constituents that would result in costly scaling or corrosion problems and the resource is conveniently located within two miles from town. Direct space heating is the most realistic application and is recommended. Several clusters of homes are located less than 2 miles away. The project could be developed on a larger scale than this study proposes. The engineering and economic models are proposed on a small scale here for simplicity in evaluating the feasibility of pursuing development. Conceivably the producing well will provide sufficient hot water to accommodate more homes than the models include. The town of Carlin seems receptive to development and there does not appear to be any major barriers to exploration or development. The regulatory climate in both the state and county is conducive to geothermal development at this level. No major regulatory or environmental obstacles are noted which would severely curtail utilization for space heating. The prospect of replacing natural gas heat with geothermal heat for 60 or more homes is economically attractive. Geothermal rates for hot water are not expected to increase as rapidly as the price of natural gas to the consumer over the next 10 years. The increases for hot water from geothermal are primarily a function of power costs for the pumps plus inflation affecting maintenance costs. Individual homeowners can expect payback on retrofitting costs within two to three years.

  17. Development of a multivalent, PrP(Sc)-specific prion vaccine through rational optimization of three disease-specific epitopes.

    PubMed

    Marciniuk, Kristen; Määttänen, Pekka; Taschuk, Ryan; Airey, T Dean; Potter, Andrew; Cashman, Neil R; Griebel, Philip; Napper, Scott

    2014-04-01

    Prion diseases represent a novel form of infectivity caused by the propagated misfolding of a self-protein (PrP(C)) into a pathological, infectious conformation (PrP(Sc)). Efforts to develop a prion vaccine have been complicated by challenges and potential dangers associated with induction of strong immune responses to a self protein. There is considerable value in the development of vaccines that are specifically targeted to the misfolded conformation. Conformation specific immunotherapy depends on identification and optimization of disease-specific epitopes (DSEs)(1) that are uniquely exposed upon misfolding. Previously, we reported development of a PrP(Sc)-specific vaccine through empirical expansions of a YYR DSE. Here we describe optimization of two additional prion DSEs, YML of β-sheet 1 and a rigid loop (RL) linking β-sheet 2 to α-helix 2, through in silico predictions of B cell epitopes and further translation of these epitopes into PrP(Sc)-specific vaccines. The optimized YML and RL vaccines retain their properties of immunogenicity, specificity and safety when delivered individually or in a multivalent format. This investigation supports the utility of combining DSE prediction models with algorithms to infer logical peptide expansions to optimize immunogenicity. Incorporation of optimized DSEs into established vaccine formulation and delivery strategies enables rapid development of peptide-based vaccines for protein misfolding diseases.

  18. A graphically oriented specification language for automatic code generation. GRASP/Ada: A Graphical Representation of Algorithms, Structure, and Processes for Ada, phase 1

    NASA Technical Reports Server (NTRS)

    Cross, James H., II; Morrison, Kelly I.; May, Charles H., Jr.; Waddel, Kathryn C.

    1989-01-01

    The first phase of a three-phase effort to develop a new graphically oriented specification language which will facilitate the reverse engineering of Ada source code into graphical representations (GRs) as well as the automatic generation of Ada source code is described. A simplified view of the three phases of Graphical Representations for Algorithms, Structure, and Processes for Ada (GRASP/Ada) with respect to three basic classes of GRs is presented. Phase 1 concentrated on the derivation of an algorithmic diagram, the control structure diagram (CSD) (CRO88a) from Ada source code or Ada PDL. Phase 2 includes the generation of architectural and system level diagrams such as structure charts and data flow diagrams and should result in a requirements specification for a graphically oriented language able to support automatic code generation. Phase 3 will concentrate on the development of a prototype to demonstrate the feasibility of this new specification language.

  19. Developing Content-Specific Reading Placement Tests.

    ERIC Educational Resources Information Center

    Behrman, Edward H.

    This paper examines the efficacy of content-general reading tests used to place students into development courses. It argues that the discipline-generic model of comprehension supporting content-general reading tests is challenged by conclusions emerging from studies of schema theory, construction-integration theory, domain-knowledge theory, and…

  20. Longitudinal Algorithms to Estimate Cardiorespiratory Fitness: Associations with Nonfatal Cardiovascular Disease and Disease-Specific Mortality

    PubMed Central

    Artero, Enrique G.; Jackson, Andrew S.; Sui, Xuemei; Lee, Duck-chul; O’Connor, Daniel P.; Lavie, Carl J.; Church, Timothy S.; Blair, Steven N.

    2014-01-01

    Objective To predict risk for non-fatal cardiovascular disease (CVD) and disease-specific mortality using CRF algorithms that do not involve exercise testing. Background Cardiorespiratory fitness (CRF) is not routinely measured, as it requires trained personnel and specialized equipment. Methods Participants were 43,356 adults (21% women) from the Aerobics Center Longitudinal Study followed between 1974 and 2003. Estimated CRF was based on sex, age, body mass index, waist circumference, resting heart rate, physical activity level and smoking status. Actual CRF was measured by a maximal treadmill test. Results During a median follow-up of 14.5 years, 1,934 deaths occurred, 627 due to CVD. In a sub-sample of 18,095 participants, 1,049 cases of non-fatal CVD events were ascertained. After adjusting for potential confounders, both measured CRF and estimated CRF were inversely associated with risk of all-cause mortality, CVD mortality and non-fatal CVD incidence in men, and with all-cause mortality and non-fatal CVD in women. The risk reduction per 1-metabolic equivalent (MET) increase ranged approximately from 10 to 20 %. Measured CRF had a slightly better discriminative ability (c-statistic) than estimated CRF, and the net reclassification improvement (NRI) of measured CRF vs. estimated CRF was 12.3% in men (p<0.05) and 19.8% in women (p<0.001). Conclusions These algorithms utilize information routinely collected to obtain an estimate of CRF that provides a valid indication of health status. In addition to identifying people at risk, this method can provide more appropriate exercise recommendations that reflect initial CRF levels. PMID:24703924

  1. Developing an Algorithm to Identify History of Cancer Using Electronic Medical Records

    PubMed Central

    Clarke, Christina L.; Feigelson, Heather S.

    2016-01-01

    Introduction/Objective: The objective of this study was to develop an algorithm to identify Kaiser Permanente Colorado (KPCO) members with a history of cancer. Background: Tumor registries are used with high precision to identify incident cancer, but are not designed to capture prevalent cancer within a population. We sought to identify a cohort of adults with no history of cancer, and thus, we could not rely solely on the tumor registry. Methods: We included all KPCO members between the ages of 40–75 years who were continuously enrolled during 2013 (N=201,787). Data from the tumor registry, chemotherapy files, inpatient and outpatient claims were used to create an algorithm to identify members with a high likelihood of cancer. We validated the algorithm using chart review and calculated sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) for occurrence of cancer. Findings: The final version of the algorithm achieved a sensitivity of 100 percent and specificity of 84.6 percent for identifying cancer. If we relied on the tumor registry alone, 47 percent of those with a history of cancer would have been missed. Discussion: Using the tumor registry alone to identify a cohort of patients with prior cancer is not sufficient. In the final version of the algorithm, the sensitivity and PPV were improved when a diagnosis code for cancer was required to accompany oncology visits or chemotherapy administration. Conclusion: Electronic medical record (EMR) data can be used effectively in combination with data from the tumor registry to identify health plan members with a history of cancer. PMID:27195308

  2. Development and evaluation of thermal model reduction algorithms for spacecraft

    NASA Astrophysics Data System (ADS)

    Deiml, Michael; Suderland, Martin; Reiss, Philipp; Czupalla, Markus

    2015-05-01

    This paper is concerned with the topic of the reduction of thermal models of spacecraft. The work presented here has been conducted in cooperation with the company OHB AG, formerly Kayser-Threde GmbH, and the Institute of Astronautics at Technische Universität München with the goal to shorten and automatize the time-consuming and manual process of thermal model reduction. The reduction of thermal models can be divided into the simplification of the geometry model for calculation of external heat flows and radiative couplings and into the reduction of the underlying mathematical model. For simplification a method has been developed which approximates the reduced geometry model with the help of an optimization algorithm. Different linear and nonlinear model reduction techniques have been evaluated for their applicability in reduction of the mathematical model. Thereby the compatibility with the thermal analysis tool ESATAN-TMS is of major concern, which restricts the useful application of these methods. Additional model reduction methods have been developed, which account to these constraints. The Matrix Reduction method allows the approximation of the differential equation to reference values exactly expect for numerical errors. The summation method enables a useful, applicable reduction of thermal models that can be used in industry. In this work a framework for model reduction of thermal models has been created, which can be used together with a newly developed graphical user interface for the reduction of thermal models in industry.

  3. Development of sensor-based nitrogen recommendation algorithms for cereal crops

    NASA Astrophysics Data System (ADS)

    Asebedo, Antonio Ray

    through 2014 to evaluate the previously developed KSU sensor-based N recommendation algorithm in corn N fertigation systems. Results indicate that the current KSU corn algorithm was effective at achieving high yields, but has the tendency to overestimate N requirements. To optimize sensor-based N recommendations for N fertigation systems, algorithms must be specifically designed for these systems to take advantage of their full capabilities, thus allowing implementation of high NUE N management systems.

  4. RPC application in muography and specific developments

    NASA Astrophysics Data System (ADS)

    Le Menedeu, E.

    2016-06-01

    Muography is an imaging technique for large and dense structures as volcanoes or nuclear reactors using atmospheric muons. We applied this technique to the observation of the Puy de Dôme, a volcano 2 km wide close to Clermont-Ferrand, France. The detection is performed with a 1 m × 1 m × 1.80 m telescope made of 4 layers of single gap glass-RPCs operated in avalanche mode. The 1 cm2 pad readout uses the Hardroc2 ASICs. The three data taking campaigns over the last three years showed that a RPC detector can be operated in-situ with good performances. Further developments to decrease the gas and power consumption and to improve the position and timing resolution of the detector are ongoing.

  5. Developing Information Power Grid Based Algorithms and Software

    NASA Technical Reports Server (NTRS)

    Dongarra, Jack

    1998-01-01

    This was an exploratory study to enhance our understanding of problems involved in developing large scale applications in a heterogeneous distributed environment. It is likely that the large scale applications of the future will be built by coupling specialized computational modules together. For example, efforts now exist to couple ocean and atmospheric prediction codes to simulate a more complete climate system. These two applications differ in many respects. They have different grids, the data is in different unit systems and the algorithms for inte,-rating in time are different. In addition the code for each application is likely to have been developed on different architectures and tend to have poor performance when run on an architecture for which the code was not designed, if it runs at all. Architectural differences may also induce differences in data representation which effect precision and convergence criteria as well as data transfer issues. In order to couple such dissimilar codes some form of translation must be present. This translation should be able to handle interpolation from one grid to another as well as construction of the correct data field in the correct units from available data. Even if a code is to be developed from scratch, a modular approach will likely be followed in that standard scientific packages will be used to do the more mundane tasks such as linear algebra or Fourier transform operations. This approach allows the developers to concentrate on their science rather than becoming experts in linear algebra or signal processing. Problems associated with this development approach include difficulties associated with data extraction and translation from one module to another, module performance on different nodal architectures, and others. In addition to these data and software issues there exists operational issues such as platform stability and resource management.

  6. Understanding disordered systems through numerical simulation and algorithm development

    NASA Astrophysics Data System (ADS)

    Sweeney, Sean Michael

    Disordered systems arise in many physical contexts. Not all matter is uniform, and impurities or heterogeneities can be modeled by fixed random disorder. Numerous complex networks also possess fixed disorder, leading to applications in transportation systems, telecommunications, social networks, and epidemic modeling, to name a few. Due to their random nature and power law critical behavior, disordered systems are difficult to study analytically. Numerical simulation can help overcome this hurdle by allowing for the rapid computation of system states. In order to get precise statistics and extrapolate to the thermodynamic limit, large systems must be studied over many realizations. Thus, innovative algorithm development is essential in order reduce memory or running time requirements of simulations. This thesis presents a review of disordered systems, as well as a thorough study of two particular systems through numerical simulation, algorithm development and optimization, and careful statistical analysis of scaling properties. Chapter 1 provides a thorough overview of disordered systems, the history of their study in the physics community, and the development of techniques used to study them. Topics of quenched disorder, phase transitions, the renormalization group, criticality, and scale invariance are discussed. Several prominent models of disordered systems are also explained. Lastly, analysis techniques used in studying disordered systems are covered. In Chapter 2, minimal spanning trees on critical percolation clusters are studied, motivated in part by an analytic perturbation expansion by Jackson and Read that I check against numerical calculations. This system has a direct mapping to the ground state of the strongly disordered spin glass. We compute the path length fractal dimension of these trees in dimensions d = {2, 3, 4, 5} and find our results to be compatible with the analytic results suggested by Jackson and Read. In Chapter 3, the random bond Ising

  7. Development and Validation of a Diabetic Retinopathy Referral Algorithm Based on Single-Field Fundus Photography

    PubMed Central

    Srinivasan, Sangeetha; Shetty, Sharan; Natarajan, Viswanathan; Sharma, Tarun; Raman, Rajiv

    2016-01-01

    Purpose To develop a simplified algorithm to identify and refer diabetic retinopathy (DR) from single-field retinal images specifically for sight-threatening diabetic retinopathy for appropriate care (ii) to determine the agreement and diagnostic accuracy of the algorithm as a pilot study among optometrists versus “gold standard” (retinal specialist grading). Methods The severity of DR was scored based on colour photo using a colour coded algorithm, which included the lesions of DR and number of quadrants involved. A total of 99 participants underwent training followed by evaluation. Data of the 99 participants were analyzed. Fifty posterior pole 45 degree retinal images with all stages of DR were presented. Kappa scores (κ), areas under the receiver operating characteristic curves (AUCs), sensitivity and specificity were determined, with further comparison between working optometrists and optometry students. Results Mean age of the participants was 22 years (range: 19–43 years), 87% being women. Participants correctly identified 91.5% images that required immediate referral (κ) = 0.696), 62.5% of images as requiring review after 6 months (κ = 0.462), and 51.2% of those requiring review after 1 year (κ = 0.532). The sensitivity and specificity of the optometrists were 91% and 78% for immediate referral, 62% and 84% for review after 6 months, and 51% and 95% for review after 1 year, respectively. The AUC was the highest (0.855) for immediate referral, second highest (0.824) for review after 1 year, and 0.727 for review after 6 months criteria. Optometry students performed better than the working optometrists for all grades of referral. Conclusions The diabetic retinopathy algorithm assessed in this work is a simple and a fairly accurate method for appropriate referral based on single-field 45 degree posterior pole retinal images. PMID:27661981

  8. Hybrid Neural-Network: Genetic Algorithm Technique for Aircraft Engine Performance Diagnostics Developed and Demonstrated

    NASA Technical Reports Server (NTRS)

    Kobayashi, Takahisa; Simon, Donald L.

    2002-01-01

    As part of the NASA Aviation Safety Program, a unique model-based diagnostics method that employs neural networks and genetic algorithms for aircraft engine performance diagnostics has been developed and demonstrated at the NASA Glenn Research Center against a nonlinear gas turbine engine model. Neural networks are applied to estimate the internal health condition of the engine, and genetic algorithms are used for sensor fault detection, isolation, and quantification. This hybrid architecture combines the excellent nonlinear estimation capabilities of neural networks with the capability to rank the likelihood of various faults given a specific sensor suite signature. The method requires a significantly smaller data training set than a neural network approach alone does, and it performs the combined engine health monitoring objectives of performance diagnostics and sensor fault detection and isolation in the presence of nominal and degraded engine health conditions.

  9. Multi-objective optimization of a low specific speed centrifugal pump using an evolutionary algorithm

    NASA Astrophysics Data System (ADS)

    An, Zhao; Zhounian, Lai; Peng, Wu; Linlin, Cao; Dazhuan, Wu

    2016-07-01

    This paper describes the shape optimization of a low specific speed centrifugal pump at the design point. The target pump has already been manually modified on the basis of empirical knowledge. A genetic algorithm (NSGA-II) with certain enhancements is adopted to improve its performance further with respect to two goals. In order to limit the number of design variables without losing geometric information, the impeller is parametrized using the Bézier curve and a B-spline. Numerical simulation based on a Reynolds averaged Navier-Stokes (RANS) turbulent model is done in parallel to evaluate the flow field. A back-propagating neural network is constructed as a surrogate for performance prediction to save computing time, while initial samples are selected according to an orthogonal array. Then global Pareto-optimal solutions are obtained and analysed. The results manifest that unexpected flow structures, such as the secondary flow on the meridian plane, have diminished or vanished in the optimized pump.

  10. Mars Entry Atmospheric Data System Modelling and Algorithm Development

    NASA Technical Reports Server (NTRS)

    Karlgaard, Christopher D.; Beck, Roger E.; OKeefe, Stephen A.; Siemers, Paul; White, Brady; Engelund, Walter C.; Munk, Michelle M.

    2009-01-01

    The Mars Entry Atmospheric Data System (MEADS) is being developed as part of the Mars Science Laboratory (MSL), Entry, Descent, and Landing Instrumentation (MEDLI) project. The MEADS project involves installing an array of seven pressure transducers linked to ports on the MSL forebody to record the surface pressure distribution during atmospheric entry. These measured surface pressures are used to generate estimates of atmospheric quantities based on modeled surface pressure distributions. In particular, the quantities to be estimated from the MEADS pressure measurements include the total pressure, dynamic pressure, Mach number, angle of attack, and angle of sideslip. Secondary objectives are to estimate atmospheric winds by coupling the pressure measurements with the on-board Inertial Measurement Unit (IMU) data. This paper provides details of the algorithm development, MEADS system performance based on calibration, and uncertainty analysis for the aerodynamic and atmospheric quantities of interest. The work presented here is part of the MEDLI performance pre-flight validation and will culminate with processing flight data after Mars entry in 2012.

  11. Development of hybrid genetic algorithms for product line designs.

    PubMed

    Balakrishnan, P V Sundar; Gupta, Rakesh; Jacob, Varghese S

    2004-02-01

    In this paper, we investigate the efficacy of artificial intelligence (AI) based meta-heuristic techniques namely genetic algorithms (GAs), for the product line design problem. This work extends previously developed methods for the single product design problem. We conduct a large scale simulation study to determine the effectiveness of such an AI based technique for providing good solutions and bench mark the performance of this against the current dominant approach of beam search (BS). We investigate the potential advantages of pursuing the avenue of developing hybrid models and then implement and study such hybrid models using two very distinct approaches: namely, seeding the initial GA population with the BS solution, and employing the BS solution as part of the GA operator's process. We go on to examine the impact of two alternate string representation formats on the quality of the solutions obtained by the above proposed techniques. We also explicitly investigate a critical managerial factor of attribute importance in terms of its impact on the solutions obtained by the alternate modeling procedures. The alternate techniques are then evaluated, using statistical analysis of variance, on a fairy large number of data sets, as to the quality of the solutions obtained with respect to the state-of-the-art benchmark and in terms of their ability to provide multiple, unique product line options.

  12. A new radar technique for satellite rainfall algorithm development

    NASA Technical Reports Server (NTRS)

    Jameson, Arthur R.

    1987-01-01

    A potential new radar parameter was investigated for measuring rainfall, namely the summation of the phase shifts at horizontal and vertical polarizations due to propagation through precipitation. The proposed radar technique has several potential advantages over other approaches because it is insensitive to the drop size distribution and to the shapes of the raindrops. Such a parameter could greatly assist the development of satellite rainfall estimation algorithms by providing comparative measurements near the ground. It could also provide hydrologically useful information for such practical applications as urban hydrology. Results of the investigation showed that the parameters can not be measured by radar. However, a closely related radar parameter, propagation differential phase shift, can be readily measured using a polarization diversity radar. It is recommended that propagation differential phase shift be further investigated and developed for radar monitoring of rainfall using a polarization agile radar. It is also recommended that a prototype multiple frequency microwave link be constructed for attenuation measurements not possible by existing radar systems.

  13. Algorithm development for Prognostics and Health Management (PHM).

    SciTech Connect

    Swiler, Laura Painton; Campbell, James E.; Doser, Adele Beatrice; Lowder, Kelly S.

    2003-10-01

    This report summarizes the results of a three-year LDRD project on prognostics and health management. System failure over some future time interval (an alternative definition is the capability to predict the remaining useful life of a system). Prognostics are integrated with health monitoring (through inspections, sensors, etc.) to provide an overall PHM capability that optimizes maintenance actions and results in higher availability at a lower cost. Our goal in this research was to develop PHM tools that could be applied to a wide variety of equipment (repairable, non-repairable, manufacturing, weapons, battlefield equipment, etc.) and require minimal customization to move from one system to the next. Thus, our approach was to develop a toolkit of reusable software objects/components and architecture for their use. We have developed two software tools: an Evidence Engine and a Consequence Engine. The Evidence Engine integrates information from a variety of sources in order to take into account all the evidence that impacts a prognosis for system health. The Evidence Engine has the capability for feature extraction, trend detection, information fusion through Bayesian Belief Networks (BBN), and estimation of remaining useful life. The Consequence Engine involves algorithms to analyze the consequences of various maintenance actions. The Consequence Engine takes as input a maintenance and use schedule, spares information, and time-to-failure data on components, then generates maintenance and failure events, and evaluates performance measures such as equipment availability, mission capable rate, time to failure, and cost. This report summarizes the capabilities we have developed, describes the approach and architecture of the two engines, and provides examples of their use. 'Prognostics' refers to the capability to predict the probability of

  14. Algorithm development for deeply buried threat detection in GPR data

    NASA Astrophysics Data System (ADS)

    Reichman, Daniël.; Malof, Jordan M.; Collins, Leslie M.

    2016-05-01

    Ground penetrating radar (GPR) is a popular remote sensing modality for buried threat detection. Many algorithms have been developed to detect buried threats using GPR data. One on-going challenge with GPR is the detection of very deeply buried targets. In this work a detection approach is proposed that improves the detection of very deeply buried targets, and interestingly, shallow targets as well. First, it is shown that the signal of a target (the target "signature") is well localized in time, and well correlated with the target's burial depth. This motivates the proposed approach, where GPR data is split into two disjoint subsets: an early and late portion corresponding to the time at which shallow and deep target signatures appear, respectively. Experiments are conducted on real GPR data using the previously published histogram of oriented gradients (HOG) prescreener: a fast supervised processing method operated on HOG features. The results show substantial improvements in detection of very deeply buried targets (4.1% to 17.2%) and in overall detection performance (81.1% to 83.9%). Further, it is shown that the performance of the proposed approach is relatively insensitive to the time at which the data is split. These results suggest that other detection methods may benefit from depth-based processing as well.

  15. Toward Developing Genetic Algorithms to Aid in Critical Infrastructure Modeling

    SciTech Connect

    Not Available

    2007-05-01

    Today’s society relies upon an array of complex national and international infrastructure networks such as transportation, telecommunication, financial and energy. Understanding these interdependencies is necessary in order to protect our critical infrastructure. The Critical Infrastructure Modeling System, CIMS©, examines the interrelationships between infrastructure networks. CIMS© development is sponsored by the National Security Division at the Idaho National Laboratory (INL) in its ongoing mission for providing critical infrastructure protection and preparedness. A genetic algorithm (GA) is an optimization technique based on Darwin’s theory of evolution. A GA can be coupled with CIMS© to search for optimum ways to protect infrastructure assets. This includes identifying optimum assets to enforce or protect, testing the addition of or change to infrastructure before implementation, or finding the optimum response to an emergency for response planning. This paper describes the addition of a GA to infrastructure modeling for infrastructure planning. It first introduces the CIMS© infrastructure modeling software used as the modeling engine to support the GA. Next, the GA techniques and parameters are defined. Then a test scenario illustrates the integration with CIMS© and the preliminary results.

  16. Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

    PubMed

    Jiang, Guoqian; Kiefer, Richard C; Rasmussen, Luke V; Solbrig, Harold R; Mo, Huan; Pacheco, Jennifer A; Xu, Jie; Montague, Enid; Thompson, William K; Denny, Joshua C; Chute, Christopher G; Pathak, Jyotishman

    2016-08-01

    The Quality Data Model (QDM) is an information model developed by the National Quality Forum for representing electronic health record (EHR)-based electronic clinical quality measures (eCQMs). In conjunction with the HL7 Health Quality Measures Format (HQMF), QDM contains core elements that make it a promising model for representing EHR-driven phenotype algorithms for clinical research. However, the current QDM specification is available only as descriptive documents suitable for human readability and interpretation, but not for machine consumption. The objective of the present study is to develop and evaluate a data element repository (DER) for providing machine-readable QDM data element service APIs to support phenotype algorithm authoring and execution. We used the ISO/IEC 11179 metadata standard to capture the structure for each data element, and leverage Semantic Web technologies to facilitate semantic representation of these metadata. We observed there are a number of underspecified areas in the QDM, including the lack of model constraints and pre-defined value sets. We propose a harmonization with the models developed in HL7 Fast Healthcare Interoperability Resources (FHIR) and Clinical Information Modeling Initiatives (CIMI) to enhance the QDM specification and enable the extensibility and better coverage of the DER. We also compared the DER with the existing QDM implementation utilized within the Measure Authoring Tool (MAT) to demonstrate the scalability and extensibility of our DER-based approach. PMID:27392645

  17. Phase 2 development of Great Lakes algorithms for Nimbus-7 coastal zone color scanner

    NASA Technical Reports Server (NTRS)

    Tanis, Fred J.

    1984-01-01

    A series of experiments have been conducted in the Great Lakes designed to evaluate the application of the NIMBUS-7 Coastal Zone Color Scanner (CZCS). Atmospheric and water optical models were used to relate surface and subsurface measurements to satellite measured radiances. Absorption and scattering measurements were reduced to obtain a preliminary optical model for the Great Lakes. Algorithms were developed for geometric correction, correction for Rayleigh and aerosol path radiance, and prediction of chlorophyll-a pigment and suspended mineral concentrations. The atmospheric algorithm developed compared favorably with existing algorithms and was the only algorithm found to adequately predict the radiance variations in the 670 nm band. The atmospheric correction algorithm developed was designed to extract needed algorithm parameters from the CZCS radiance values. The Gordon/NOAA ocean algorithms could not be demonstrated to work for Great Lakes waters. Predicted values of chlorophyll-a concentration compared favorably with expected and measured data for several areas of the Great Lakes.

  18. Patient non-specific algorithm for seizures detection in scalp EEG.

    PubMed

    Orosco, Lorena; Correa, Agustina Garcés; Diez, Pablo; Laciar, Eric

    2016-04-01

    Epilepsy is a brain disorder that affects about 1% of the population in the world. Seizure detection is an important component in both the diagnosis of epilepsy and seizure control. In this work a patient non-specific strategy for seizure detection based on Stationary Wavelet Transform of EEG signals is developed. A new set of features is proposed based on an average process. The seizure detection consisted in finding the EEG segments with seizures and their onset and offset points. The proposed offline method was tested in scalp EEG records of 24-48h of duration of 18 epileptic patients. The method reached mean values of specificity of 99.9%, sensitivity of 87.5% and a false positive rate per hour of 0.9.

  19. Development and evaluation of task-specific NLP framework in China.

    PubMed

    Ge, Caixia; Zhang, Yinsheng; Huang, Zhenzhen; Jia, Zheng; Ju, Meizhi; Duan, Huilong; Li, Haomin

    2015-01-01

    Natural language processing (NLP) has been designed to convert narrative text into structured data. Although some general NLP architectures have been developed, a task-specific NLP framework to facilitate the effective use of data is still a challenge in lexical resource limited regions, such as China. The purpose of this study is to design and develop a task-specific NLP framework to extract targeted information from particular documents by adopting dedicated algorithms on current limited lexical resources. In this framework, a shared and evolving ontology mechanism was designed. The result has shown that such a free text driven platform will accelerate the NLP technology acceptance in China.

  20. Developing new algorithms for estimating river discharge from SWOT

    NASA Astrophysics Data System (ADS)

    Pavelsky, T. M.; Durand, M. T.

    2012-12-01

    Flow of water through rivers is a critical component of the global hydrologic cycle, yet discharge on many of the world's rivers remains poorly constrained by ground-based observations. The planned NASA/CNES Surface Water and Ocean Topography (SWOT) satellite mission will provide concurrent observations of inundated area, water surface elevation, and its spatial derivative (surface slope) for rivers wider than 100 m (and perhaps as narrow as 50 m), which will allow a step-change improvement in our ability to characterize river discharge from space. New discharge algorithms must be developed to incorporate SWOT's unprecedented observations. While ground-based discharge is usually measured at river cross-sections, SWOT will estimate discharge over river reaches of variable length. Cross-sectional discharge is often estimated using slope-area scaling methods such as Manning's Equation, and modified forms of these equations could be used to estimate reach-averaged discharge. While some of the parameters required to estimate discharge are measured directly by SWOT, others including baseflow depth and channel roughness (e.g. Manning's n) are not. Promising new methods are under development to estimate baseflow depth in selected river reaches by extrapolating width-stage relationships. In contrast, channel roughness has received relatively little attention. By combining SWOT observations of several reaches over multiple overpasses, however, it may be possible to simultaneously derive both depth and channel roughness from SWOT observations alone. The principle in this method is to start from mass and momentum conservation, apply a slope-area method such as Manning's equation, assume the roughness coefficient and bathymetry are temporally-invariant, then solve for the unknowns by constraining over a number of overpasses. In principle, only four overpasses are needed for this method, but in practice more will likely be needed to obtain an accurate solution; the actual number

  1. Accessing primary care Big Data: the development of a software algorithm to explore the rich content of consultation records

    PubMed Central

    MacRae, J; Darlow, B; McBain, L; Jones, O; Stubbe, M; Turner, N; Dowell, A

    2015-01-01

    Objective To develop a natural language processing software inference algorithm to classify the content of primary care consultations using electronic health record Big Data and subsequently test the algorithm's ability to estimate the prevalence and burden of childhood respiratory illness in primary care. Design Algorithm development and validation study. To classify consultations, the algorithm is designed to interrogate clinical narrative entered as free text, diagnostic (Read) codes created and medications prescribed on the day of the consultation. Setting Thirty-six consenting primary care practices from a mixed urban and semirural region of New Zealand. Three independent sets of 1200 child consultation records were randomly extracted from a data set of all general practitioner consultations in participating practices between 1 January 2008–31 December 2013 for children under 18 years of age (n=754 242). Each consultation record within these sets was independently classified by two expert clinicians as respiratory or non-respiratory, and subclassified according to respiratory diagnostic categories to create three ‘gold standard’ sets of classified records. These three gold standard record sets were used to train, test and validate the algorithm. Outcome measures Sensitivity, specificity, positive predictive value and F-measure were calculated to illustrate the algorithm's ability to replicate judgements of expert clinicians within the 1200 record gold standard validation set. Results The algorithm was able to identify respiratory consultations in the 1200 record validation set with a sensitivity of 0.72 (95% CI 0.67 to 0.78) and a specificity of 0.95 (95% CI 0.93 to 0.98). The positive predictive value of algorithm respiratory classification was 0.93 (95% CI 0.89 to 0.97). The positive predictive value of the algorithm classifying consultations as being related to specific respiratory diagnostic categories ranged from 0.68 (95% CI 0.40 to 1.00; other

  2. Using Ethnographic Methods for Development of Culture-Specific Interventions

    ERIC Educational Resources Information Center

    Varjas, K.; Nastasi, B.K.; Bernstein Moore, R.; Jayasena, A.

    2005-01-01

    Cultural specificity is considered important in developing effective school- and community-based interventions. This article illustrates the use of ethnographic research to enhance understanding of students' cultural experiences and facilitate the development of culturally specific interventions. Ethnographic data were collected during formative…

  3. Item Selection for the Development of Short Forms of Scales Using an Ant Colony Optimization Algorithm

    ERIC Educational Resources Information Center

    Leite, Walter L.; Huang, I-Chan; Marcoulides, George A.

    2008-01-01

    This article presents the use of an ant colony optimization (ACO) algorithm for the development of short forms of scales. An example 22-item short form is developed for the Diabetes-39 scale, a quality-of-life scale for diabetes patients, using a sample of 265 diabetes patients. A simulation study comparing the performance of the ACO algorithm and…

  4. SU-E-T-305: Study of the Eclipse Electron Monte Carlo Algorithm for Patient Specific MU Calculations

    SciTech Connect

    Wang, X; Qi, S; Agazaryan, N; DeMarco, J

    2014-06-01

    Purpose: To evaluate the Eclipse electron Monte Carlo (eMC) algorithm based on patient specific monitor unit (MU) calculations, and to propose a new factor which quantitatively predicts the discrepancy of MUs between the eMC algorithm and hand calculations. Methods: Electron treatments were planned for 61 patients on Eclipse (Version 10.0) using the eMC algorithm for Varian TrueBeam linear accelerators. For each patient, the same treatment beam angle was kept for a point dose calculation at dmax performed with the reference condition, which used an open beam with a 15×15 cm2 size cone and 100 SSD. A patient specific correction factor (PCF) was obtained by getting the ratio between this point dose and the calibration dose, which is 1 cGy per MU delivered at dmax. The hand calculation results were corrected by the PCFs and compared with MUs from the treatment plans. Results: The MU from the treatment plans were in average (7.1±6.1)% higher than the hand calculations. The average MU difference between the corrected hand calculations and the eMC treatment plans was (0.07±3.48)%. A correlation coefficient of 0.8 was found between (1-PCF) and the percentage difference between the treatment plan and hand calculations. Most outliers were treatment plans with small beam opening (< 4 cm) and low energy beams (6 and 9 MeV). Conclusion: For CT-based patient treatment plans, the eMC algorithm tends to generate a larger MU than hand calculations. Caution should be taken for eMC patient plans with small field sizes and low energy beams. We hypothesize that the PCF ratio reflects the influence of patient surface curvature and tissue inhomogeneity to patient specific percent depth dose (PDD) curve and MU calculations in eMC algorithm.

  5. Estimating aquifer recharge in Mission River watershed, Texas: model development and calibration using genetic algorithms

    NASA Astrophysics Data System (ADS)

    Uddameri, V.; Kuchanur, M.

    2007-01-01

    Soil moisture balance studies provide a convenient approach to estimate aquifer recharge when only limited site-specific data are available. A monthly mass-balance approach has been utilized in this study to estimate recharge in a small watershed in the coastal bend of South Texas. The developed lumped parameter model employs four adjustable parameters to calibrate model predicted stream runoff to observations at a gaging station. A new procedure was developed to correctly capture the intermittent nature of rainfall. The total monthly rainfall was assigned to a single-equivalent storm whose duration was obtained via calibration. A total of four calibrations were carried out using an evolutionary computing technique called genetic algorithms as well as the conventional gradient descent (GD) technique. Ordinary least squares and the heteroscedastic maximum likelihood error (HMLE) based objective functions were evaluated as part of this study as well. While the genetic algorithm based calibrations were relatively better in capturing the peak runoff events, the GD based calibration did slightly better in capturing the low flow events. Treating the Box-Cox exponent in the HMLE function as a calibration parameter did not yield better estimates and the study corroborates the suggestion made in the literature of fixing this exponent at 0.3. The model outputs were compared against available information and results indicate that the developed modeling approach provides a conservative estimate of recharge.

  6. Development of a generally applicable morphokinetic algorithm capable of predicting the implantation potential of embryos transferred on Day 3

    PubMed Central

    Petersen, Bjørn Molt; Boel, Mikkel; Montag, Markus; Gardner, David K.

    2016-01-01

    STUDY QUESTION Can a generally applicable morphokinetic algorithm suitable for Day 3 transfers of time-lapse monitored embryos originating from different culture conditions and fertilization methods be developed for the purpose of supporting the embryologist's decision on which embryo to transfer back to the patient in assisted reproduction? SUMMARY ANSWER The algorithm presented here can be used independently of culture conditions and fertilization method and provides predictive power not surpassed by other published algorithms for ranking embryos according to their blastocyst formation potential. WHAT IS KNOWN ALREADY Generally applicable algorithms have so far been developed only for predicting blastocyst formation. A number of clinics have reported validated implantation prediction algorithms, which have been developed based on clinic-specific culture conditions and clinical environment. However, a generally applicable embryo evaluation algorithm based on actual implantation outcome has not yet been reported. STUDY DESIGN, SIZE, DURATION Retrospective evaluation of data extracted from a database of known implantation data (KID) originating from 3275 embryos transferred on Day 3 conducted in 24 clinics between 2009 and 2014. The data represented different culture conditions (reduced and ambient oxygen with various culture medium strategies) and fertilization methods (IVF, ICSI). The capability to predict blastocyst formation was evaluated on an independent set of morphokinetic data from 11 218 embryos which had been cultured to Day 5. PARTICIPANTS/MATERIALS, SETTING, METHODS The algorithm was developed by applying automated recursive partitioning to a large number of annotation types and derived equations, progressing to a five-fold cross-validation test of the complete data set and a validation test of different incubation conditions and fertilization methods. The results were expressed as receiver operating characteristics curves using the area under the

  7. Development of standardized specifications for silicon solar cells

    NASA Technical Reports Server (NTRS)

    Scott-Monck, J. A.

    1977-01-01

    A space silicon solar cell assembly (cell and coverglass) specification aimed at standardizing the diverse requirements of current cell or assembly specifications was developed. This specification was designed to minimize both the procurement and manufacturing costs for space qualified silicon solar cell assembilies. In addition, an impact analysis estimating the technological and economic effects of employing a standardized space silicon solar cell assembly was performed.

  8. Beyond Morphosyntax in Developing Bilinguals and "Specific" Language Impairment

    ERIC Educational Resources Information Center

    Kohnert, Kathryn; Ebert, Kerry Danahy

    2010-01-01

    In the Keynote Article, "The Interface Between Bilingual Development and Specific Language Impairment," Johanne Paradis considers issues and evidence at the intersection of children learning two languages and primary or specific language impairment (SLI). The review focuses on morphosyntactic evidence and the fit of this evidence with maturational…

  9. Tactical Synthesis Of Efficient Global Search Algorithms

    NASA Technical Reports Server (NTRS)

    Nedunuri, Srinivas; Smith, Douglas R.; Cook, William R.

    2009-01-01

    Algorithm synthesis transforms a formal specification into an efficient algorithm to solve a problem. Algorithm synthesis in Specware combines the formal specification of a problem with a high-level algorithm strategy. To derive an efficient algorithm, a developer must define operators that refine the algorithm by combining the generic operators in the algorithm with the details of the problem specification. This derivation requires skill and a deep understanding of the problem and the algorithmic strategy. In this paper we introduce two tactics to ease this process. The tactics serve a similar purpose to tactics used for determining indefinite integrals in calculus, that is suggesting possible ways to attack the problem.

  10. Multivariate Generalizability Models for Tests Developed from Tables of Specifications.

    ERIC Educational Resources Information Center

    Jarjoura, David; Brennan, Robert L.

    1983-01-01

    Multivariate generalizability techniques are used to bridge the gap between psychometric constraints and the tables of specifications needed in test development. Techniques are illustrated with results from the American College Testing Assessment Program. (Author/PN)

  11. Crew interface specifications development for inflight maintenance and stowage functions

    NASA Technical Reports Server (NTRS)

    Carl, J. G.

    1974-01-01

    Findings and data products developed during crew specification study for inflight maintenance and stowage functions are reported. From this information base, a family of data concepts to support crew inflight troubleshooting and corrective maintenance activities was developed and specified. Recommendations are made for the improvement of inflight maintenance planning, preparations and operations in future space flight programs through the establishment of an inflight maintenance organization and specific suggestions for techniques to improve the management of the inflight maintenance function.

  12. Crew interface specifications development functions, phase 3A

    NASA Technical Reports Server (NTRS)

    Carl, J. G.

    1973-01-01

    The findings and data products developed during the crew interface specification study for inflight maintenance and stowage functions are presented. Guidelines are provided for improving the present progress of defining, controlling, and managing the flight crew requirements. The following data products were developed: (1) description of inflight maintenance management process, (2) specifications for inflight maintenance management requirements, and (3) suggested inflight maintenance data processing reports for logistics management.

  13. TIGER: Development of Thermal Gradient Compensation Algorithms and Techniques

    NASA Technical Reports Server (NTRS)

    Hereford, James; Parker, Peter A.; Rhew, Ray D.

    2004-01-01

    In a wind tunnel facility, the direct measurement of forces and moments induced on the model are performed by a force measurement balance. The measurement balance is a precision-machined device that has strain gages at strategic locations to measure the strain (i.e., deformations) due to applied forces and moments. The strain gages convert the strain (and hence the applied force) to an electrical voltage that is measured by external instruments. To address the problem of thermal gradients on the force measurement balance NASA-LaRC has initiated a research program called TIGER - Thermally-Induced Gradients Effects Research. The ultimate goals of the TIGER program are to: (a) understand the physics of the thermally-induced strain and its subsequent impact on load measurements and (b) develop a robust thermal gradient compensation technique. This paper will discuss the impact of thermal gradients on force measurement balances, specific aspects of the TIGER program (the design of a special-purpose balance, data acquisition and data analysis challenges), and give an overall summary.

  14. Remote Sensing of Ocean Color in the Arctic: Algorithm Development and Comparative Validation. Chapter 9

    NASA Technical Reports Server (NTRS)

    Cota, Glenn F.

    2001-01-01

    The overall goal of this effort is to acquire a large bio-optical database, encompassing most environmental variability in the Arctic, to develop algorithms for phytoplankton biomass and production and other optically active constituents. A large suite of bio-optical and biogeochemical observations have been collected in a variety of high latitude ecosystems at different seasons. The Ocean Research Consortium of the Arctic (ORCA) is a collaborative effort between G.F. Cota of Old Dominion University (ODU), W.G. Harrison and T. Platt of the Bedford Institute of Oceanography (BIO), S. Sathyendranath of Dalhousie University and S. Saitoh of Hokkaido University. ORCA has now conducted 12 cruises and collected over 500 in-water optical profiles plus a variety of ancillary data. Observational suites typically include apparent optical properties (AOPs), inherent optical property (IOPs), and a variety of ancillary observations including sun photometry, biogeochemical profiles, and productivity measurements. All quality-assured data have been submitted to NASA's SeaWIFS Bio-Optical Archive and Storage System (SeaBASS) data archive. Our algorithm development efforts address most of the potential bio-optical data products for the Sea-Viewing Wide Field-of-view Sensor (SeaWiFS), Moderate Resolution Imaging Spectroradiometer (MODIS), and GLI, and provides validation for a specific areas of concern, i.e., high latitudes and coastal waters.

  15. The development of a simplified epithelial tissue phantom for the evaluation of an autofluorescence mitigation algorithm

    NASA Astrophysics Data System (ADS)

    Hou, Vivian W.; Yang, Chenying; Nelson, Leonard Y.; Seibel, Eric J.

    2014-03-01

    Previously we developed an ultrathin, flexible, multimodal scanning fiber endoscope (SFE) for concurrent white light and fluorescence imaging. Autofluorescence (AF) arising from endogenous fluorophores (primarily collagen in the esophagus) act as major confounders in fluorescence-aided detection. To address the issue of AF, a real-time mitigation algorithm was developed and has been show to successfully remove AF during SFE imaging. To test our algorithm, we previously developed flexible, color-matched, synthetic phantoms featuring a homogenous distribution of collagen. In order to more rigorously test the AF mitigation algorithm, a phantom that better mimicked the in-vivo distribution of collagen in tissue was developed.

  16. Results from Development of Model Specifications for Multifamily Energy Retrofits

    SciTech Connect

    Brozyna, K.

    2012-08-01

    Specifications, modeled after CSI MasterFormat, provide the trade contractors and builders with requirements and recommendations on specific building materials, components and industry practices that comply with the expectations and intent of the requirements within the various funding programs associated with a project. The goal is to create a greater level of consistency in execution of energy efficiency retrofits measures across the multiple regions a developer may work. IBACOS and Mercy Housing developed sample model specifications based on a common building construction type that Mercy Housing encounters.

  17. Results From Development of Model Specifications for Multifamily Energy Retrofits

    SciTech Connect

    Brozyna, Kevin

    2012-08-01

    Specifications, modeled after CSI MasterFormat, provide the trade contractors and builders with requirements and recommendations on specific building materials, components and industry practices that comply with the expectations and intent of the requirements within the various funding programs associated with a project. The goal is to create a greater level of consistency in execution of energy efficiency retrofits measures across the multiple regions a developer may work. IBACOS and Mercy Housing developed sample model specifications based on a common building construction type that Mercy Housing encounters.

  18. Thermopolis/East Thermopolis, Wyoming site-specific development analysis

    SciTech Connect

    Burgess-Lyon, P.

    1981-06-01

    Some of the topics addressed are: what the area is like currently in terms of its land use, economics, and demographics; reservoir potentials; how the reservoir might be developed; marketing the final product; financial assistance for development; the legal aspects of development; and barriers to possible development. Some specific topics discussed are: leasing and permitting; heat exchangers for geothermal heating systems; and corrosion, scaling, and materials selection. (MHR)

  19. Motion Cueing Algorithm Development: New Motion Cueing Program Implementation and Tuning

    NASA Technical Reports Server (NTRS)

    Houck, Jacob A. (Technical Monitor); Telban, Robert J.; Cardullo, Frank M.; Kelly, Lon C.

    2005-01-01

    A computer program has been developed for the purpose of driving the NASA Langley Research Center Visual Motion Simulator (VMS). This program includes two new motion cueing algorithms, the optimal algorithm and the nonlinear algorithm. A general description of the program is given along with a description and flowcharts for each cueing algorithm, and also descriptions and flowcharts for subroutines used with the algorithms. Common block variable listings and a program listing are also provided. The new cueing algorithms have a nonlinear gain algorithm implemented that scales each aircraft degree-of-freedom input with a third-order polynomial. A description of the nonlinear gain algorithm is given along with past tuning experience and procedures for tuning the gain coefficient sets for each degree-of-freedom to produce the desired piloted performance. This algorithm tuning will be needed when the nonlinear motion cueing algorithm is implemented on a new motion system in the Cockpit Motion Facility (CMF) at the NASA Langley Research Center.

  20. Motion Cueing Algorithm Development: Human-Centered Linear and Nonlinear Approaches

    NASA Technical Reports Server (NTRS)

    Houck, Jacob A. (Technical Monitor); Telban, Robert J.; Cardullo, Frank M.

    2005-01-01

    While the performance of flight simulator motion system hardware has advanced substantially, the development of the motion cueing algorithm, the software that transforms simulated aircraft dynamics into realizable motion commands, has not kept pace. Prior research identified viable features from two algorithms: the nonlinear "adaptive algorithm", and the "optimal algorithm" that incorporates human vestibular models. A novel approach to motion cueing, the "nonlinear algorithm" is introduced that combines features from both approaches. This algorithm is formulated by optimal control, and incorporates a new integrated perception model that includes both visual and vestibular sensation and the interaction between the stimuli. Using a time-varying control law, the matrix Riccati equation is updated in real time by a neurocomputing approach. Preliminary pilot testing resulted in the optimal algorithm incorporating a new otolith model, producing improved motion cues. The nonlinear algorithm vertical mode produced a motion cue with a time-varying washout, sustaining small cues for longer durations and washing out large cues more quickly compared to the optimal algorithm. The inclusion of the integrated perception model improved the responses to longitudinal and lateral cues. False cues observed with the NASA adaptive algorithm were absent. The neurocomputing approach was crucial in that the number of presentations of an input vector could be reduced to meet the real time requirement without degrading the quality of the motion cues.

  1. Design requirements and development of an airborne descent path definition algorithm for time navigation

    NASA Technical Reports Server (NTRS)

    Izumi, K. H.; Thompson, J. L.; Groce, J. L.; Schwab, R. W.

    1986-01-01

    The design requirements for a 4D path definition algorithm are described. These requirements were developed for the NASA ATOPS as an extension of the Local Flow Management/Profile Descent algorithm. They specify the processing flow, functional and data architectures, and system input requirements, and recommended the addition of a broad path revision (reinitialization) function capability. The document also summarizes algorithm design enhancements and the implementation status of the algorithm on an in-house PDP-11/70 computer. Finally, the requirements for the pilot-computer interfaces, the lateral path processor, and guidance and steering function are described.

  2. Update on Development of Mesh Generation Algorithms in MeshKit

    SciTech Connect

    Jain, Rajeev; Vanderzee, Evan; Mahadevan, Vijay

    2015-09-30

    MeshKit uses a graph-based design for coding all its meshing algorithms, which includes the Reactor Geometry (and mesh) Generation (RGG) algorithms. This report highlights the developmental updates of all the algorithms, results and future work. Parallel versions of algorithms, documentation and performance results are reported. RGG GUI design was updated to incorporate new features requested by the users; boundary layer generation and parallel RGG support were added to the GUI. Key contributions to the release, upgrade and maintenance of other SIGMA1 libraries (CGM and MOAB) were made. Several fundamental meshing algorithms for creating a robust parallel meshing pipeline in MeshKit are under development. Results and current status of automated, open-source and high quality nuclear reactor assembly mesh generation algorithms such as trimesher, quadmesher, interval matching and multi-sweeper are reported.

  3. Developments in Human Centered Cueing Algorithms for Control of Flight Simulator Motion Systems

    NASA Technical Reports Server (NTRS)

    Houck, Jacob A.; Telban, Robert J.; Cardullo, Frank M.

    1997-01-01

    The authors conducted further research with cueing algorithms for control of flight simulator motion systems. A variation of the so-called optimal algorithm was formulated using simulated aircraft angular velocity input as a basis. Models of the human vestibular sensation system, i.e. the semicircular canals and otoliths, are incorporated within the algorithm. Comparisons of angular velocity cueing responses showed a significant improvement over a formulation using angular acceleration input. Results also compared favorably with the coordinated adaptive washout algorithm, yielding similar results for angular velocity cues while eliminating false cues and reducing the tilt rate for longitudinal cues. These results were confirmed in piloted tests on the current motion system at NASA-Langley, the Visual Motion Simulator (VMS). Proposed future developments by the authors in cueing algorithms are revealed. The new motion system, the Cockpit Motion Facility (CMF), where the final evaluation of the cueing algorithms will be conducted, is also described.

  4. Evaluating Knowledge Structure-Based Adaptive Testing Algorithms and System Development

    ERIC Educational Resources Information Center

    Wu, Huey-Min; Kuo, Bor-Chen; Yang, Jinn-Min

    2012-01-01

    In recent years, many computerized test systems have been developed for diagnosing students' learning profiles. Nevertheless, it remains a challenging issue to find an adaptive testing algorithm to both shorten testing time and precisely diagnose the knowledge status of students. In order to find a suitable algorithm, four adaptive testing…

  5. Clustering algorithm evaluation and the development of a replacement for procedure 1. [for crop inventories

    NASA Technical Reports Server (NTRS)

    Lennington, R. K.; Johnson, J. K.

    1979-01-01

    An efficient procedure which clusters data using a completely unsupervised clustering algorithm and then uses labeled pixels to label the resulting clusters or perform a stratified estimate using the clusters as strata is developed. Three clustering algorithms, CLASSY, AMOEBA, and ISOCLS, are compared for efficiency. Three stratified estimation schemes and three labeling schemes are also considered and compared.

  6. Geologist's Field Assistant: Developing Image and Spectral Analyses Algorithms for Remote Science Exploration

    NASA Astrophysics Data System (ADS)

    Gulick, V. C.; Morris, R. L.; Bishop, J.; Gazis, P.; Alena, R.; Sierhuis, M.

    2002-03-01

    We are developing science analyses algorithms to interface with a Geologist's Field Assistant device to allow robotic or human remote explorers to better sense their surroundings during limited surface excursions. Our algorithms will interpret spectral and imaging data obtained by various sensors.

  7. Editorial Commentary: The Importance of Developing an Algorithm When Diagnosing Hip Pain.

    PubMed

    Coleman, Struan H

    2016-08-01

    The differential diagnosis of groin pain is broad and complex. Therefore, it is essential to develop an algorithm when differentiating the hip as a cause of groin pain from other sources. Selective injections in and around the hip can be helpful when making the diagnosis but are only one part of the algorithm.

  8. Development of Online Cognitive and Algorithm Tests as Assessment Tools in Introductory Computer Science Courses

    ERIC Educational Resources Information Center

    Avancena, Aimee Theresa; Nishihara, Akinori; Vergara, John Paul

    2012-01-01

    This paper presents the online cognitive and algorithm tests, which were developed in order to determine if certain cognitive factors and fundamental algorithms correlate with the performance of students in their introductory computer science course. The tests were implemented among Management Information Systems majors from the Philippines and…

  9. Development of a Behavioural Algorithm for Autonomous Spacecraft

    NASA Astrophysics Data System (ADS)

    Radice, G.

    manner with the environment through the use of sensors and actuators. As such, there is little computational effort required to implement such an approach, which is clearly of great benefit for limited micro-satellites. Rather than using complex world models, which have to be updated, the agent is allowed to exploit the dynamics of its environment for cues as to appropriate actions to take to achieve mission goals. The particular artificial agent implementation used here has been borrowed from studies of biological systems, where it has been used successfully to provide models of motivation and opportunistic behaviour. The so called "cue-deficit" action selection algorithm considers the micro-spacecraft to be a non linear dynamical system with a number of observable states. Using optimal control theory rules are derived which determine which of a finite repertoire of behaviours the satellite should select and perform. It will also be shown that in the event of hardware failures the algorithm will resequence the spacecraft actions to ensure survival while still meeting the mission goals, albeit in a degraded manner.

  10. Development of a novel constellation based landmark detection algorithm

    NASA Astrophysics Data System (ADS)

    Ghayoor, Ali; Vaidya, Jatin G.; Johnson, Hans J.

    2013-03-01

    Anatomical landmarks such as the anterior commissure (AC) and posterior commissure (PC) are commonly used by researchers for co-registration of images. In this paper, we present a novel, automated approach for landmark detection that combines morphometric constraining and statistical shape models to provide accurate estimation of landmark points. This method is made robust to large rotations in initial head orientation by extracting extra information of the eye centers using a radial Hough transform and exploiting the centroid of head mass (CM) using a novel estimation approach. To evaluate the effectiveness of this method, the algorithm is trained on a set of 20 images with manually selected landmarks, and a test dataset is used to compare the automatically detected against the manually detected landmark locations of the AC, PC, midbrain-pons junction (MPJ), and fourth ventricle notch (VN4). The results show that the proposed method is accurate as the average error between the automatically and manually labeled landmark points is less than 1 mm. Also, the algorithm is highly robust as it was successfully run on a large dataset that included different kinds of images with various orientation, spacing, and origin.

  11. Specific volume coupling and convergence properties in hybrid particle/finite volume algorithms for turbulent reactive flows

    NASA Astrophysics Data System (ADS)

    Popov, Pavel P.; Wang, Haifeng; Pope, Stephen B.

    2015-08-01

    We investigate the coupling between the two components of a Large Eddy Simulation/Probability Density Function (LES/PDF) algorithm for the simulation of turbulent reacting flows. In such an algorithm, the Large Eddy Simulation (LES) component provides a solution to the hydrodynamic equations, whereas the Lagrangian Monte Carlo Probability Density Function (PDF) component solves for the PDF of chemical compositions. Special attention is paid to the transfer of specific volume information from the PDF to the LES code: the specific volume field contains probabilistic noise due to the nature of the Monte Carlo PDF solution, and thus the use of the specific volume field in the LES pressure solver needs careful treatment. Using a test flow based on the Sandia/Sydney Bluff Body Flame, we determine the optimal strategy for specific volume feedback. Then, the overall second-order convergence of the entire LES/PDF procedure is verified using a simple vortex ring test case, with special attention being given to bias errors due to the number of particles per LES Finite Volume (FV) cell.

  12. Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar.

    PubMed

    Ko, Jae-Heung; Kim, Hyun-Tae; Hwang, Ildoo; Han, Kyung-Hwan

    2012-06-01

    Plant biotechnology offers a means to create novel phenotypes. However, commercial application of biotechnology in crop improvement programmes is severely hindered by the lack of utility promoters (or freedom to operate the existing ones) that can drive gene expression in a tissue-specific or temporally controlled manner. Woody biomass is gaining popularity as a source of fermentable sugars for liquid fuel production. To improve the quantity and quality of woody biomass, developing xylem (DX)-specific modification of the feedstock is highly desirable. To develop utility promoters that can drive transgene expression in a DX-specific manner, we used the Affymetrix Poplar Genome Arrays to obtain tissue-type-specific transcriptomes from poplar stems. Subsequent bioinformatics analysis identified 37 transcripts that are specifically or strongly expressed in DX cells of poplar. After further confirmation of their DX-specific expression using semi-quantitative PCR, we selected four genes (DX5, DX8, DX11 and DX15) for in vivo confirmation of their tissue-specific expression in transgenic poplars. The promoter regions of the selected DX genes were isolated and fused to a β-glucuronidase (GUS)-reported gene in a binary vector. This construct was used to produce transgenic poplars via Agrobacterium-mediated transformation. The GUS expression patterns of the resulting transgenic plants showed that these promoters were active in the xylem cells at early seedling growth and had strongest expression in the developing xylem cells at later growth stages of poplar. We conclude that these DX promoters can be used as a utility promoter for DX-specific biomass engineering.

  13. Enhanced detection criteria in implantable cardioverter defibrillators: sensitivity and specificity of the stability algorithm at different heart rates.

    PubMed

    Kettering, K; Dörnberger, V; Lang, R; Vonthein, R; Suchalla, R; Bosch, R F; Mewis, C; Eigenberger, B; Kühlkamp, V

    2001-09-01

    The lack of specificity in the detection of ventricular tachyarrhythmias remains a major clinical problem in the therapy with ICDs. The stability criterion has been shown to be useful in discriminating ventricular tachyarrhythmias characterized by a small variation in cycle lengths from AF with rapid ventricular response presenting a higher degree of variability of RR intervals. But RR variability decreases with increasing heart rate during AF. Therefore, the aim of the study was to determine if the sensitivity and specificity of the STABILITY algorithm for spontaneous tachyarrhythmias is related to ventricular rate. Forty-two patients who had received an ICD (CPI Ventak Mini I, II, III or Ventak AV) were enrolled in the study. Two hundred ninety-eight episodes of AF with rapid ventricular response and 817 episodes of ventricular tachyarrhythmias were analyzed. Sensitivity and specificity in the detection of ventricular tachyarrhythmias were calculated at different heart rates. When a stability value of 30 ms was programmed the result was a sensitivity of 82.7% and a specificity of 91.4% in the detection of slow ventricular tachyarrhythmias (heart rate < 150 beats/min). When faster ventricular tachyarrhythmias with rates between 150 and 169 beats/min (170-189 beats/min) were analyzed, a stability value of 30 ms provided a sensitivity of 94.5% (94.7%) and a specificity of 76.5% (54.0%). For arrhythmia episodes > or = 190 beats/min, the same stability value resulted in a sensitivity of 78.2% and a specificity of 41.0%. Even when other stability values were taken into consideration, no acceptable sensitivity/specificity values could be obtained in this subgroup. RR variability decreases with increasing heart rate during AF while RR variability remains almost constant at different cycle lengths during ventricular tachyarrhythmias. Thus, acceptable performance of the STABILITY algorithm appears to be limited to ventricular rate zones < 170 beats/min.

  14. Decoding neural events from fMRI BOLD signal: a comparison of existing approaches and development of a new algorithm.

    PubMed

    Bush, Keith; Cisler, Josh

    2013-07-01

    Neuroimaging methodology predominantly relies on the blood oxygenation level dependent (BOLD) signal. While the BOLD signal is a valid measure of neuronal activity, variances in fluctuations of the BOLD signal are not only due to fluctuations in neural activity. Thus, a remaining problem in neuroimaging analyses is developing methods that ensure specific inferences about neural activity that are not confounded by unrelated sources of noise in the BOLD signal. Here, we develop and test a new algorithm for performing semiblind (i.e., no knowledge of stimulus timings) deconvolution of the BOLD signal that treats the neural event as an observable, but intermediate, probabilistic representation of the system's state. We test and compare this new algorithm against three other recent deconvolution algorithms under varied levels of autocorrelated and Gaussian noise, hemodynamic response function (HRF) misspecification and observation sampling rate. Further, we compare the algorithms' performance using two models to simulate BOLD data: a convolution of neural events with a known (or misspecified) HRF versus a biophysically accurate balloon model of hemodynamics. We also examine the algorithms' performance on real task data. The results demonstrated good performance of all algorithms, though the new algorithm generally outperformed the others (3.0% improvement) under simulated resting-state experimental conditions exhibiting multiple, realistic confounding factors (as well as 10.3% improvement on a real Stroop task). The simulations also demonstrate that the greatest negative influence on deconvolution accuracy is observation sampling rate. Practical and theoretical implications of these results for improving inferences about neural activity from fMRI BOLD signal are discussed.

  15. Development of an algorithm for production of inactivated arbovirus antigens in cell culture

    PubMed Central

    Goodman, C.H.; Russell, B.J.; Velez, J.O.; Laven, J.J.; Nicholson, W.L; Bagarozzi, D.A.; Moon, J.L.; Bedi, K.; Johnson, B.W.

    2015-01-01

    Arboviruses are medically important pathogens that cause human disease ranging from a mild fever to encephalitis. Laboratory diagnosis is essential to differentiate arbovirus infections from other pathogens with similar clinical manifestations. The Arboviral Diseases Branch (ADB) reference laboratory at the CDC Division of Vector-Borne Diseases (DVBD) produces reference antigens used in serological assays such as the virus-specific immunoglobulin M antibody-capture enzyme-linked immunosorbent assay (MAC-ELISA). Antigen production in cell culture has largely replaced the use of suckling mice; however, the methods are not directly transferable. The development of a cell culture antigen production algorithm for nine arboviruses from the three main arbovirus families, Flaviviridae, Togaviridae, and Bunyaviridae, is described here. Virus cell culture growth and harvest conditions were optimized, inactivation methods were evaluated, and concentration procedures were compared for each virus. Antigen performance was evaluated by the MAC-ELISA at each step of the procedure. The antigen production algorithm is a framework for standardization of methodology and quality control; however, a single antigen production protocol was not applicable to all arboviruses and needed to be optimized for each virus. PMID:25102428

  16. Development of an algorithm for production of inactivated arbovirus antigens in cell culture.

    PubMed

    Goodman, C H; Russell, B J; Velez, J O; Laven, J J; Nicholson, W L; Bagarozzi, D A; Moon, J L; Bedi, K; Johnson, B W

    2014-11-01

    Arboviruses are medically important pathogens that cause human disease ranging from a mild fever to encephalitis. Laboratory diagnosis is essential to differentiate arbovirus infections from other pathogens with similar clinical manifestations. The Arboviral Diseases Branch (ADB) reference laboratory at the CDC Division of Vector-Borne Diseases (DVBD) produces reference antigens used in serological assays such as the virus-specific immunoglobulin M antibody-capture enzyme-linked immunosorbent assay (MAC-ELISA). Antigen production in cell culture has largely replaced the use of suckling mice; however, the methods are not directly transferable. The development of a cell culture antigen production algorithm for nine arboviruses from the three main arbovirus families, Flaviviridae, Togaviridae, and Bunyaviridae, is described here. Virus cell culture growth and harvest conditions were optimized, inactivation methods were evaluated, and concentration procedures were compared for each virus. Antigen performance was evaluated by the MAC-ELISA at each step of the procedure. The antigen production algorithm is a framework for standardization of methodology and quality control; however, a single antigen production protocol was not applicable to all arboviruses and needed to be optimized for each virus.

  17. Development of an algorithm for production of inactivated arbovirus antigens in cell culture.

    PubMed

    Goodman, C H; Russell, B J; Velez, J O; Laven, J J; Nicholson, W L; Bagarozzi, D A; Moon, J L; Bedi, K; Johnson, B W

    2014-11-01

    Arboviruses are medically important pathogens that cause human disease ranging from a mild fever to encephalitis. Laboratory diagnosis is essential to differentiate arbovirus infections from other pathogens with similar clinical manifestations. The Arboviral Diseases Branch (ADB) reference laboratory at the CDC Division of Vector-Borne Diseases (DVBD) produces reference antigens used in serological assays such as the virus-specific immunoglobulin M antibody-capture enzyme-linked immunosorbent assay (MAC-ELISA). Antigen production in cell culture has largely replaced the use of suckling mice; however, the methods are not directly transferable. The development of a cell culture antigen production algorithm for nine arboviruses from the three main arbovirus families, Flaviviridae, Togaviridae, and Bunyaviridae, is described here. Virus cell culture growth and harvest conditions were optimized, inactivation methods were evaluated, and concentration procedures were compared for each virus. Antigen performance was evaluated by the MAC-ELISA at each step of the procedure. The antigen production algorithm is a framework for standardization of methodology and quality control; however, a single antigen production protocol was not applicable to all arboviruses and needed to be optimized for each virus. PMID:25102428

  18. Development and Validation of a HPV-32 Specific PCR Assay

    PubMed Central

    Herrel, Nicholas R; Johnson, Nadia L; Cameron, Jennifer E; Leigh, Janet; Hagensee, Michael E

    2009-01-01

    Background Human Papillomavirus-32 (HPV-32) has traditionally been associated with focal-epithelial-hyperplasia (FEH). It is also present in 58% of oral warts of HIV-positive individuals whose prevalence is increasing. Current methods for the detection of HPV-32 are labor-intensive and insensitive so the goal of this work was to develop a highly sensitive and easy to use specific polymerase chain reaction (PCR) assay. Materials and methods An HPV-32 L1 specific PCR assay was developed and optimized. The sensitivity and specificity was compared to previous assays utilized for detection (PGMY and MY09/11 PCR with dot blot hybridization) using cloned HPV-32 L1, the closely related HPV-42 L1 as well as clinical samples (oral swabs and fluids from 89 HIV-positive subjects). Results The HPV-32 specific PCR assay showed improved sensitivity to 5 copies of HPV-32 as compared to the PGMY PCR, MY09/11 PCR and dot blot which had a limit of detection of approximately 3,000 copies. Using the HPV-32 dot blot hybridization assay as the gold standard, the HPV-32 specific PCR assay has a sensitivity of 95.8% and 88.9% by sample and subject, respectively, and specificity was 87.8% and 58.8% by sample and subject, respectively. The low sensitivity is due to the HPV-32 specific PCR assays ability to detect more HPV-32 positive samples and may be the new gold standard. Conclusion Due to the ease, sensitivity, and specificity the HPV-32 specific PCR assay is superior to previous assays and is ideal for detection of HPV-32 in large cohorts. This assay provides an excellent tool to study the natural history of HPV-32 infection and the development of oral warts. PMID:19558697

  19. Development of a specification for Christmas tree and wellhead components

    SciTech Connect

    Joosten, M.W.; Robinson, G.C.

    1983-05-01

    The development of a specification for wellhead and Christmas tree components exposed to aggressive production environments is described in terms of supplemental requirements to the American Petroleum Institute Specifications 6A and 14D for Wellhead Equipment. The supplemental requirements provide for material selection and confirmation of the integrity of these materials. Implementation of this quality control program has been effective in preventing offshore wellhead failures.

  20. Double images encryption method with resistance against the specific attack based on an asymmetric algorithm.

    PubMed

    Wang, Xiaogang; Zhao, Daomu

    2012-05-21

    A double-image encryption technique that based on an asymmetric algorithm is proposed. In this method, the encryption process is different from the decryption and the encrypting keys are also different from the decrypting keys. In the nonlinear encryption process, the images are encoded into an amplitude cyphertext, and two phase-only masks (POMs) generated based on phase truncation are kept as keys for decryption. By using the classical double random phase encoding (DRPE) system, the primary images can be collected by an intensity detector that located at the output plane. Three random POMs that applied in the asymmetric encryption can be safely applied as public keys. Simulation results are presented to demonstrate the validity and security of the proposed protocol.

  1. Development of response models for the Earth Radiation Budget Experiment (ERBE) sensors. Part 4: Preliminary nonscanner models and count conversion algorithms

    NASA Technical Reports Server (NTRS)

    Halyo, Nesim; Choi, Sang H.

    1987-01-01

    Two count conversion algorithms and the associated dynamic sensor model for the M/WFOV nonscanner radiometers are defined. The sensor model provides and updates the constants necessary for the conversion algorithms, though the frequency with which these updates were needed was uncertain. This analysis therefore develops mathematical models for the conversion of irradiance at the sensor field of view (FOV) limiter into data counts, derives from this model two algorithms for the conversion of data counts to irradiance at the sensor FOV aperture and develops measurement models which account for a specific target source together with a sensor. The resulting algorithms are of the gain/offset and Kalman filter types. The gain/offset algorithm was chosen since it provided sufficient accuracy using simpler computations.

  2. Development of new flux splitting schemes. [computational fluid dynamics algorithms

    NASA Technical Reports Server (NTRS)

    Liou, Meng-Sing; Steffen, Christopher J., Jr.

    1992-01-01

    Maximizing both accuracy and efficiency has been the primary objective in designing a numerical algorithm for computational fluid dynamics (CFD). This is especially important for solutions of complex three dimensional systems of Navier-Stokes equations which often include turbulence modeling and chemistry effects. Recently, upwind schemes have been well received for their capability in resolving discontinuities. With this in mind, presented are two new flux splitting techniques for upwind differencing. The first method is based on High-Order Polynomial Expansions (HOPE) of the mass flux vector. The second new flux splitting is based on the Advection Upwind Splitting Method (AUSM). The calculation of the hypersonic conical flow demonstrates the accuracy of the splitting in resolving the flow in the presence of strong gradients. A second series of tests involving the two dimensional inviscid flow over a NACA 0012 airfoil demonstrates the ability of the AUSM to resolve the shock discontinuity at transonic speed. A third case calculates a series of supersonic flows over a circular cylinder. Finally, the fourth case deals with tests of a two dimensional shock wave/boundary layer interaction.

  3. The development of a bearing spectral analyzer and algorithms to detect turbopump bearing wear from deflectometer and strain gage data

    NASA Astrophysics Data System (ADS)

    Martinez, Carol L.

    1992-07-01

    Over the last several years, Rocketdyne has actively developed condition and health monitoring techniques and their elements for rocket engine components, specifically high pressure turbopumps. Of key interest is the development of bearing signature analysis systems for real-time monitoring of the cryogen-cooled turbopump shaft bearings, which spin at speeds up to 36,000 RPM. These system elements include advanced bearing vibration sensors, signal processing techniques, wear mode algorithms, and integrated control software. Results of development efforts in the areas of signal processing and wear mode identification and quantification algorithms based on strain gage and deflectometer data are presented. Wear modes investigated include: inner race wear, cage pocket wear, outer race wear, differential ball wear, cracked inner race, and nominal wear.

  4. Development of a dose algorithm for the modified panasonic UD-802 personal dosimeter used at three mile island

    SciTech Connect

    Miklos, J. A.; Plato, P.

    1988-01-01

    During the fall of 1981, the personnel dosimetry group at GPU Nuclear Corporation at Three Mile Island (TMI) requested assistance from The University of Michigan (UM) in developing a dose algorithm for use at TMI-2. The dose algorithm had to satisfy the specific needs of TMI-2, particularly the need to distinguish beta-particle emitters of different energies, as well as having the capability of satisfying the requirements of the American National Standards Institute (ANSI) N13.11-1983 standard. A standard Panasonic UD-802 dosimeter was modified by having the plastic filter over element 2 removed. The dosimeter and hanger consists of the elements with a 14 mg/cm/sup 2/ density thickness and the filtrations shown. The hanger on this dosimeter had a double open window to facilitate monitoring for low-energy beta particles. The dose algorithm was written to satisfy the requirements of the ANSI N13.11-1983 standard, to include /sup 204/Tl with mixtures of /sup 204/Tl with /sup 90/Sr//sup 90/Y and /sup 137/Cs, and to include 81- and 200-keV average energy X-ray spectra. Stress tests were conducted to observe the algorithm performance to low doses, temperature, humidity, and the residual response following high-dose irradiations. The ability of the algorithm to determine dose from the beta particles of /sup 147/Pm was also investigated.

  5. Dendrite and Axon Specific Geometrical Transformation in Neurite Development

    PubMed Central

    Mironov, Vasily I.; Semyanov, Alexey V.; Kazantsev, Victor B.

    2016-01-01

    We propose a model of neurite growth to explain the differences in dendrite and axon specific neurite development. The model implements basic molecular kinetics, e.g., building protein synthesis and transport to the growth cone, and includes explicit dependence of the building kinetics on the geometry of the neurite. The basic assumption was that the radius of the neurite decreases with length. We found that the neurite dynamics crucially depended on the relationship between the rate of active transport and the rate of morphological changes. If these rates were in the balance, then the neurite displayed axon specific development with a constant elongation speed. For dendrite specific growth, the maximal length was rapidly saturated by degradation of building protein structures or limited by proximal part expansion reaching the characteristic cell size. PMID:26858635

  6. Human third molars development: Comparison of 9 country specific populations.

    PubMed

    Thevissen, P W; Fieuws, S; Willems, G

    2010-09-10

    The majority of age estimation models based on third molar development are constructed on samples from populations with described and outlined origin. Due to unlike research protocols these studies can rarely be compared for the evaluation of possible geographical or ethnical influences on third molar development. The aim of this study is to evaluate country specific third molar development on standardized collected and analyzed data. On panoramic radiographs selected from subjects out of 9 country specific populations (Belgium, China, Japan, Korea, Poland, Thailand, Turkey, Saudi-Arabia and South-India) the four third molar scores were registered, according to a modified Gleiser and Hunt methodology. To obtain for each subject a (factor) score which represents the degree of third molar development, a generalized linear mixed model for multivariate ordinal data was fitted on the repeated third molar scores. Differences between countries are analyzed using gender-specific regression models for these factor scores with age and country as predictors. Comparisons between countries revealed differences in speed and onset of development. However, although reaching statistical significance, differences in actual value were small and not constant over the considered age range. In all countries, at all ages, males were ahead in third molar development compared to females.

  7. Development of an automatic identification algorithm for antibiogram analysis.

    PubMed

    Costa, Luan F R; da Silva, Eduardo S; Noronha, Victor T; Vaz-Moreira, Ivone; Nunes, Olga C; Andrade, Marcelino M de

    2015-12-01

    Routinely, diagnostic and microbiology laboratories perform antibiogram analysis which can present some difficulties leading to misreadings and intra and inter-reader deviations. An Automatic Identification Algorithm (AIA) has been proposed as a solution to overcome some issues associated with the disc diffusion method, which is the main goal of this work. AIA allows automatic scanning of inhibition zones obtained by antibiograms. More than 60 environmental isolates were tested using susceptibility tests which were performed for 12 different antibiotics for a total of 756 readings. Plate images were acquired and classified as standard or oddity. The inhibition zones were measured using the AIA and results were compared with reference method (human reading), using weighted kappa index and statistical analysis to evaluate, respectively, inter-reader agreement and correlation between AIA-based and human-based reading. Agreements were observed in 88% cases and 89% of the tests showed no difference or a <4mm difference between AIA and human analysis, exhibiting a correlation index of 0.85 for all images, 0.90 for standards and 0.80 for oddities with no significant difference between automatic and manual method. AIA resolved some reading problems such as overlapping inhibition zones, imperfect microorganism seeding, non-homogeneity of the circumference, partial action of the antimicrobial, and formation of a second halo of inhibition. Furthermore, AIA proved to overcome some of the limitations observed in other automatic methods. Therefore, AIA may be a practical tool for automated reading of antibiograms in diagnostic and microbiology laboratories. PMID:26513468

  8. Characterizing interplanetary shocks for development and optimization of an automated solar wind shock detection algorithm

    NASA Astrophysics Data System (ADS)

    Cash, M. D.; Wrobel, J. S.; Cosentino, K. C.; Reinard, A. A.

    2014-06-01

    Human evaluation of solar wind data for interplanetary (IP) shock identification relies on both heuristics and pattern recognition, with the former lending itself to algorithmic representation and automation. Such detection algorithms can potentially alert forecasters of approaching shocks, providing increased warning of subsequent geomagnetic storms. However, capturing shocks with an algorithmic treatment alone is challenging, as past and present work demonstrates. We present a statistical analysis of 209 IP shocks observed at L1, and we use this information to optimize a set of shock identification criteria for use with an automated solar wind shock detection algorithm. In order to specify ranges for the threshold values used in our algorithm, we quantify discontinuities in the solar wind density, velocity, temperature, and magnetic field magnitude by analyzing 8 years of IP shocks detected by the SWEPAM and MAG instruments aboard the ACE spacecraft. Although automatic shock detection algorithms have previously been developed, in this paper we conduct a methodical optimization to refine shock identification criteria and present the optimal performance of this and similar approaches. We compute forecast skill scores for over 10,000 permutations of our shock detection criteria in order to identify the set of threshold values that yield optimal forecast skill scores. We then compare our results to previous automatic shock detection algorithms using a standard data set, and our optimized algorithm shows improvements in the reliability of automated shock detection.

  9. The settling dynamics of flocculating mud-sand mixtures: Part 1—Empirical algorithm development

    NASA Astrophysics Data System (ADS)

    Manning, Andrew James; Baugh, John V.; Spearman, Jeremy R.; Pidduck, Emma L.; Whitehouse, Richard J. S.

    2011-03-01

    , and in most cases produced excessive over-estimations in MSF. The reason for these predictive errors was that this hybrid approach still treated mud and sand separately. This is potentially reasonable if the sediments are segregated and non-interactive, but appears to be unacceptable when the mud and sand are flocculating via an interactive matrix. The MSSV empirical model may be regarded as a `first stage' approximation for scientists and engineers either wishing to investigate mixed-sediment flocculation and its depositional characteristics in a quantifiable framework, or simulate mixed-sediment settling in a numerical sediment transport model where flocculation is occurring. The preliminary assessment concluded that in general when all the SPM and shear stress range data were combined, the net result indicated that the new mixed-sediment settling velocity empirical model was only in error by -3 to -6.7% across the experimental mud:sand mixture ratios. Tuning of the algorithm coefficients is required for the accurate prediction of depositional rates in a specific estuary, as was demonstrated by the algorithm calibration using data from Portsmouth Harbour. The development of a more physics-based model, which captures the essential features of the empirical MSSV model, would be more universally applicable.

  10. Application of multiple imputation using the two-fold fully conditional specification algorithm in longitudinal clinical data

    PubMed Central

    Welch, Catherine; Bartlett, Jonathan; Petersen, Irene

    2014-01-01

    Electronic health records of longitudinal clinical data are a valuable resource for health care research. One obstacle of using databases of health records in epidemiological analyses is that general practitioners mainly record data if they are clinically relevant. We can use existing methods to handle missing data, such as multiple imputation (mi), if we treat the unavailability of measurements as a missing-data problem. Most software implementations of MI do not take account of the longitudinal and dynamic structure of the data and are difficult to implement in large databases with millions of individuals and long follow-up. Nevalainen, Kenward, and Virtanen (2009, Statistics in Medicine 28: 3657–3669) proposed the two-fold fully conditional specification algorithm to impute missing data in longitudinal data. It imputes missing values at a given time point, conditional on information at the same time point and immediately adjacent time points. In this article, we describe a new command, twofold, that implements the two-fold fully conditional specification algorithm. It is extended to accommodate MI of longitudinal clinical records in large databases. PMID:25420071

  11. Molecular logic of neocortical projection neuron specification, development and diversity

    PubMed Central

    Galazo, MJ; Padmanabhan, H; Macklis, JD

    2013-01-01

    The sophisticated circuitry of the neocortex is assembled from a diverse repertoire of neuronal subtypes generated during development under precise molecular regulation. In recent years, several key controls over the specification and differentiation of neocortical projection neurons have been identified. This work provides substantial insight into the “molecular logic” underlying cortical development, increasingly supporting a model in which individual progenitor-stage and postmitotic regulators are embedded within highly-interconnected networks that gate sequential developmental decisions. Here, we provide an integrative account of the molecular controls that direct the progressive development and delineation of subtype and area identity of neocortical projection neurons. PMID:24105342

  12. GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides.

    PubMed

    Toghi Eshghi, Shadi; Shah, Punit; Yang, Weiming; Li, Xingde; Zhang, Hui

    2015-01-01

    Glycoprotein changes occur in not only protein abundance but also the occupancy of each glycosylation site by different glycoforms during biological or pathological processes. Recent advances in mass spectrometry instrumentation and techniques have facilitated analysis of intact glycopeptides in complex biological samples by allowing the users to generate spectra of intact glycopeptides with glycans attached to each specific glycosylation site. However, assigning these spectra, leading to identification of the glycopeptides, is challenging. Here, we report an algorithm, named GPQuest, for site-specific identification of intact glycopeptides using higher-energy collisional dissociation (HCD) fragmentation of complex samples. In this algorithm, a spectral library of glycosite-containing peptides in the sample was built by analyzing the isolated glycosite-containing peptides using HCD LC-MS/MS. Spectra of intact glycopeptides were selected by using glycan oxonium ions as signature ions for glycopeptide spectra. These oxonium-ion-containing spectra were then compared with the spectral library generated from glycosite-containing peptides, resulting in assignment of each intact glycopeptide MS/MS spectrum to a specific glycosite-containing peptide. The glycan occupying each glycosite was determined by matching the mass difference between the precursor ion of intact glycopeptide and the glycosite-containing peptide to a glycan database. Using GPQuest, we analyzed LC-MS/MS spectra of protein extracts from prostate tumor LNCaP cells. Without enrichment of glycopeptides from global tryptic peptides and at a false discovery rate of 1%, 1008 glycan-containing MS/MS spectra were assigned to 769 unique intact N-linked glycopeptides, representing 344 N-linked glycosites with 57 different N-glycans. Spectral library matching using GPQuest assigns the HCD LC-MS/MS generated spectra of intact glycopeptides in an automated and high-throughput manner. Additionally, spectral library

  13. Development of a new genetic algorithm to solve the feedstock scheduling problem in an anaerobic digester

    NASA Astrophysics Data System (ADS)

    Cram, Ana Catalina

    As worldwide environmental awareness grow, alternative sources of energy have become important to mitigate climate change. Biogas in particular reduces greenhouse gas emissions that contribute to global warming and has the potential of providing 25% of the annual demand for natural gas in the U.S. In 2011, 55,000 metric tons of methane emissions were reduced and 301 metric tons of carbon dioxide emissions were avoided through the use of biogas alone. Biogas is produced by anaerobic digestion through the fermentation of organic material. It is mainly composed of methane with a rage of 50 to 80% in its concentration. Carbon dioxide covers 20 to 50% and small amounts of hydrogen, carbon monoxide and nitrogen. The biogas production systems are anaerobic digestion facilities and the optimal operation of an anaerobic digester requires the scheduling of all batches from multiple feedstocks during a specific time horizon. The availability times, biomass quantities, biogas production rates and storage decay rates must all be taken into account for maximal biogas production to be achieved during the planning horizon. Little work has been done to optimize the scheduling of different types of feedstock in anaerobic digestion facilities to maximize the total biogas produced by these systems. Therefore, in the present thesis, a new genetic algorithm is developed with the main objective of obtaining the optimal sequence in which different feedstocks will be processed and the optimal time to allocate to each feedstock in the digester with the main objective of maximizing the production of biogas considering different types of feedstocks, arrival times and decay rates. Moreover, all batches need to be processed in the digester in a specified time with the restriction that only one batch can be processed at a time. The developed algorithm is applied to 3 different examples and a comparison with results obtained in previous studies is presented.

  14. Software requirements: Guidance and control software development specification

    NASA Technical Reports Server (NTRS)

    Withers, B. Edward; Rich, Don C.; Lowman, Douglas S.; Buckland, R. C.

    1990-01-01

    The software requirements for an implementation of Guidance and Control Software (GCS) are specified. The purpose of the GCS is to provide guidance and engine control to a planetary landing vehicle during its terminal descent onto a planetary surface and to communicate sensory information about that vehicle and its descent to some receiving device. The specification was developed using the structured analysis for real time system specification methodology by Hatley and Pirbhai and was based on a simulation program used to study the probability of success of the 1976 Viking Lander missions to Mars. Three versions of GCS are being generated for use in software error studies.

  15. Northwest Energy Efficient Manufactured Housing Program Specification Development

    SciTech Connect

    Hewes, Tom; Peeks, Brady

    2013-02-01

    The DOE research team Building America Partnership for Improved Residential Construction (BA-PIRC), Bonneville Power Administration (BPA), and Northwest Energy Works (NEW), the current Northwest Energy Efficient Manufactured Home Program (NEEM) program administrator, collaborated to research a new specification that would reduce the energy requirements of a NEEM home.This research identified and developed combinations of cost-effective high performance building assemblies and mechanical systems that can readily can be deployed in the manufacturing setting that reduce energy used for space conditioning, water heating and lighting by 50% over the present NEEM specifications.

  16. The development of an algebraic multigrid algorithm for symmetric positive definite linear systems

    SciTech Connect

    Vanek, P.; Mandel, J.; Brezina, M.

    1996-12-31

    An algebraic multigrid algorithm for symmetric, positive definite linear systems is developed based on the concept of prolongation by smoothed aggregation. Coarse levels are generated automatically. We present a set of requirements motivated heuristically by a convergence theory. The algorithm then attempts to satisfy the requirements. Input to the method are the coefficient matrix and zero energy modes, which are determined from nodal coordinates and knowledge of the differential equation. Efficiency of the resulting algorithm is demonstrated by computational results on real world problems from solid elasticity, plate blending, and shells.

  17. Modeling the Development of Goal-Specificity in Mirror Neurons.

    PubMed

    Thill, Serge; Svensson, Henrik; Ziemke, Tom

    2011-12-01

    Neurophysiological studies have shown that parietal mirror neurons encode not only actions but also the goal of these actions. Although some mirror neurons will fire whenever a certain action is perceived (goal-independently), most will only fire if the motion is perceived as part of an action with a specific goal. This result is important for the action-understanding hypothesis as it provides a potential neurological basis for such a cognitive ability. It is also relevant for the design of artificial cognitive systems, in particular robotic systems that rely on computational models of the mirror system in their interaction with other agents. Yet, to date, no computational model has explicitly addressed the mechanisms that give rise to both goal-specific and goal-independent parietal mirror neurons. In the present paper, we present a computational model based on a self-organizing map, which receives artificial inputs representing information about both the observed or executed actions and the context in which they were executed. We show that the map develops a biologically plausible organization in which goal-specific mirror neurons emerge. We further show that the fundamental cause for both the appearance and the number of goal-specific neurons can be found in geometric relationships between the different inputs to the map. The results are important to the action-understanding hypothesis as they provide a mechanism for the emergence of goal-specific parietal mirror neurons and lead to a number of predictions: (1) Learning of new goals may mostly reassign existing goal-specific neurons rather than recruit new ones; (2) input differences between executed and observed actions can explain observed corresponding differences in the number of goal-specific neurons; and (3) the percentage of goal-specific neurons may differ between motion primitives.

  18. Deciphering the Minimal Algorithm for Development and Information-genesis

    NASA Astrophysics Data System (ADS)

    Li, Zhiyuan; Tang, Chao; Li, Hao

    During development, cells with identical genomes acquires different fates in a highly organized manner. In order to decipher the principles underlining development, we used C.elegans as the model organism. Based on a large set of microscopy imaging, we first constructed a ``standard worm'' in silico: from the single zygotic cell to about 500 cell stage, the lineage, position, cell-cell contact and gene expression dynamics are quantified for each cell in order to investigate principles underlining these intensive data. Next, we reverse-engineered the possible gene-gene/cell-cell interaction rules that are capable of running a dynamic model recapitulating the early fate decisions during C.elegans development. we further formulized the C.elegans embryogenesis in the language of information genesis. Analysis towards data and model uncovered the global landscape of development in the cell fate space, suggested possible gene regulatory architectures and cell signaling processes, revealed diversity and robustness as the essential trade-offs in development, and demonstrated general strategies in building multicellular organisms.

  19. MODIS algorithm development and data visualization using ACTS

    NASA Technical Reports Server (NTRS)

    Abbott, Mark R.

    1992-01-01

    The study of the Earth as a system will require the merger of scientific and data resources on a much larger scale than has been done in the past. New methods of scientific research, particularly in the development of geographically dispersed, interdisciplinary teams, are necessary if we are to understand the complexity of the Earth system. Even the planned satellite missions themselves, such as the Earth Observing System, will require much more interaction between researchers and engineers if they are to produce scientifically useful data products. A key component in these activities is the development of flexible, high bandwidth data networks that can be used to move large amounts of data as well as allow researchers to communicate in new ways, such as through video. The capabilities of the Advanced Communications Technology Satellite (ACTS) will allow the development of such networks. The Pathfinder global AVHRR data set and the upcoming SeaWiFS Earthprobe mission would serve as a testbed in which to develop the tools to share data and information among geographically distributed researchers. Our goal is to develop a 'Distributed Research Environment' that can be used as a model for scientific collaboration in the EOS era. The challenge is to unite the advances in telecommunications with the parallel advances in computing and networking.

  20. Development of HF radar inversion algorithm for spectrum estimation (HIAS)

    NASA Astrophysics Data System (ADS)

    Hisaki, Yukiharu

    2015-03-01

    A method for estimating ocean wave directional spectra using an HF (high-frequency) ocean radar was developed. This method represents the development of work conducted in previous studies. In the present method, ocean wave directional spectra are estimated on polar coordinates whose center is the radar position, while spectra are estimated on regular grids. This method can be applied to both single and multiple radar cases. The area for wave estimation is more flexible than that of the previous method. As the signal to noise (SN) ratios of Doppler spectra are critical for wave estimation, we develop a method to exclude low SN ratio Doppler spectra. The validity of the method is demonstrated by comparing results with in situ observed wave data that it would be impossible to estimate by the methods of other groups.

  1. The Development of FPGA-Based Pseudo-Iterative Clustering Algorithms

    NASA Astrophysics Data System (ADS)

    Drueke, Elizabeth; Fisher, Wade; Plucinski, Pawel

    2016-03-01

    The Large Hadron Collider (LHC) in Geneva, Switzerland, is set to undergo major upgrades in 2025 in the form of the High-Luminosity Large Hadron Collider (HL-LHC). In particular, several hardware upgrades are proposed to the ATLAS detector, one of the two general purpose detectors. These hardware upgrades include, but are not limited to, a new hardware-level clustering algorithm, to be performed by a field programmable gate array, or FPGA. In this study, we develop that clustering algorithm and compare the output to a Python-implemented topoclustering algorithm developed at the University of Oregon. Here, we present the agreement between the FPGA output and expected output, with particular attention to the time required by the FPGA to complete the algorithm and other limitations set by the FPGA itself.

  2. Development of practical multiband algorithms for estimating land-surface temperature from EOS/MODIS data

    NASA Technical Reports Server (NTRS)

    Dozier, J.; Wan, Z.

    1994-01-01

    A practical multiband, hierarchical algorithm for estimating land-surface temperature from NASA's future Earth Observing System (EOS) instruments Moderate Resolution Imaging Spectroradiometer (MODIS) and Advance Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is developed through comprehensive, accurate, radiative transfer simulations at moderate spectral steps of 1-5/cm for wide ranges of atmospheric and surface conditions. The algorithm will accept empirical or estimated information about the surface emissivity and reflectivity and the atmospheric temperature and water-vapor profiles. Ground-based and aircraft measurements are necessary to validate and improve the algorithm and to establish its quality. Its accuracy depends on the calibration accuracy of thermal infrared data, uncertainties in surface heterogeneity, and temperature-dependent atmospheric absorption coefficients. Better knowledge of land-surface spectral emissivities and more accurate coefficients for atmospheric molecular band absorption and water vapor continuum absorption are needed to develop global land-surface temperature algorithms accurate to 1-2 K.

  3. Innovative approach in the development of computer assisted algorithm for spine pedicle screw placement.

    PubMed

    Solitro, Giovanni F; Amirouche, Farid

    2016-04-01

    Pedicle screws are typically used for fusion, percutaneous fixation, and means of gripping a spinal segment. The screws act as a rigid and stable anchor points to bridge and connect with a rod as part of a construct. The foundation of the fusion is directly related to the placement of these screws. Malposition of pedicle screws causes intraoperative complications such as pedicle fractures and dural lesions and is a contributing factor to fusion failure. Computer assisted spine surgery (CASS) and patient-specific drill templates were developed to reduce this failure rate, but the trajectory of the screws remains a decision driven by anatomical landmarks often not easily defined. Current data shows the need of a robust and reliable technique that prevents screw misplacement. Furthermore, there is a need to enhance screw insertion guides to overcome the distortion of anatomical landmarks, which is viewed as a limiting factor by current techniques. The objective of this study is to develop a method and mathematical lemmas that are fundamental to the development of computer algorithms for pedicle screw placement. Using the proposed methodology, we show how we can generate automated optimal safe screw insertion trajectories based on the identification of a set of intrinsic parameters. The results, obtained from the validation of the proposed method on two full thoracic segments, are similar to previous morphological studies. The simplicity of the method, being pedicle arch based, is applicable to vertebrae where landmarks are either not well defined, altered or distorted. PMID:26922675

  4. Domain specificity in social interactions, social thought, and social development.

    PubMed

    Turiel, Elliot

    2010-01-01

    J. E. Grusec and M. Davidov (this issue) have taken good steps in formulating a domain-specific view of parent-child interactions. This commentary supports the introduction of domain specificity to analyses of parenting. Their formulation is an advance over formulations that characterized parental practices globally. This commentary calls for inclusion of definitions of the classification system of domain-specific interactions and criteria for each domain. It is also maintained that Grusec and Davidov's domains of social interaction imply that processes of development are involved, along with socialization; that bidirectionality in parent-child relations needs to be extended to include mutual influences and the construction of domains of social thought; and that conflicts and opposition within families coexist with compliance and social harmony.

  5. Development of a remote sensing algorithm for cyanobacterial phycocyanin pigment in the Baltic Sea using neural network approach

    NASA Astrophysics Data System (ADS)

    Riha, Stefan; Krawczyk, Harald

    2011-11-01

    Water quality monitoring in the Baltic Sea is of high ecological importance for all its neighbouring countries. They are highly interested in a regular monitoring of water quality parameters of their regional zones. A special attention is paid to the occurrence and dissemination of algae blooms. Among the appearing blooms the possibly toxicological or harmful cyanobacteria cultures are a special case of investigation, due to their specific optical properties and due to the negative influence on the ecological state of the aquatic system. Satellite remote sensing, with its high temporal and spatial resolution opportunities, allows the frequent observations of large areas of the Baltic Sea with special focus on its two seasonal algae blooms. For a better monitoring of the cyanobacteria dominated summer blooms, adapted algorithms are needed which take into account the special optical properties of blue-green algae. Chlorophyll-a standard algorithms typically fail in a correct recognition of these occurrences. To significantly improve the opportunities of observation and propagation of the cyanobacteria blooms, the Marine Remote Sensing group of DLR has started the development of a model based inversion algorithm that includes a four component bio-optical water model for Case2 waters, which extends the commonly calculated parameter set chlorophyll, Suspended Matter and CDOM with an additional parameter for the estimation of phycocyanin absorption. It was necessary to carry out detailed optical laboratory measurements with different cyanobacteria cultures, occurring in the Baltic Sea, for the generation of a specific bio-optical model. The inversion of satellite remote sensing data is based on an artificial Neural Network technique. This is a model based multivariate non-linear inversion approach. The specifically designed Neural Network is trained with a comprehensive dataset of simulated reflectance values taking into account the laboratory obtained specific optical

  6. Millimeter-wave imaging radiometer data processing and development of water vapor retrieval algorithms

    NASA Technical Reports Server (NTRS)

    Chang, L. Aron

    1995-01-01

    This document describes the current status of Millimeter-wave Imaging Radiometer (MIR) data processing and the technical development of the first version of a water vapor retrieval algorithm. The algorithm is being used by NASA/GSFC Microwave Sensors Branch, Laboratory for Hydrospheric Processes. It is capable of a three dimensional mapping of moisture fields using microwave data from airborne sensor of MIR and spaceborne instrument of Special Sensor Microwave/T-2 (SSM/T-2).

  7. Applications of feature selection. [development of classification algorithms for LANDSAT data

    NASA Technical Reports Server (NTRS)

    Guseman, L. F., Jr.

    1976-01-01

    The use of satellite-acquired (LANDSAT) multispectral scanner (MSS) data to conduct an inventory of some crop of economic interest such as wheat over a large geographical area is considered in relation to the development of accurate and efficient algorithms for data classification. The dimension of the measurement space and the computational load for a classification algorithm is increased by the use of multitemporal measurements. Feature selection/combination techniques used to reduce the dimensionality of the problem are described.

  8. Ocean observations with EOS/MODIS: Algorithm development and post launch studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1995-01-01

    An investigation of the influence of stratospheric aerosol on the performance of the atmospheric correction algorithm was carried out. The results indicate how the performance of the algorithm is degraded if the stratospheric aerosol is ignored. Use of the MODIS 1380 nm band to effect a correction for stratospheric aerosols was also studied. The development of a multi-layer Monte Carlo radiative transfer code that includes polarization by molecular and aerosol scattering and wind-induced sea surface roughness has been completed. Comparison tests with an existing two-layer successive order of scattering code suggests that both codes are capable of producing top-of-atmosphere radiances with errors usually less than 0.1 percent. An initial set of simulations to study the effects of ignoring the polarization of the the ocean-atmosphere light field, in both the development of the atmospheric correction algorithm and the generation of the lookup tables used for operation of the algorithm, have been completed. An algorithm was developed that can be used to invert the radiance exiting the top and bottom of the atmosphere to yield the columnar optical properties of the atmospheric aerosol under clear sky conditions over the ocean, for aerosol optical thicknesses as large as 2. The algorithm is capable of retrievals with such large optical thicknesses because all significant orders of multiple scattering are included.

  9. Unified Framework for Development, Deployment and Robust Testing of Neuroimaging Algorithms

    PubMed Central

    Joshi, Alark; Scheinost, Dustin; Okuda, Hirohito; Belhachemi, Dominique; Murphy, Isabella; Staib, Lawrence H.; Papademetris, Xenophon

    2011-01-01

    Developing both graphical and command-line user interfaces for neuroimaging algorithms requires considerable effort. Neuroimaging algorithms can meet their potential only if they can be easily and frequently used by their intended users. Deployment of a large suite of such algorithms on multiple platforms requires consistency of user interface controls, consistent results across various platforms and thorough testing. We present the design and implementation of a novel object-oriented framework that allows for rapid development of complex image analysis algorithms with many reusable components and the ability to easily add graphical user interface controls. Our framework also allows for simplified yet robust nightly testing of the algorithms to ensure stability and cross platform interoperability. All of the functionality is encapsulated into a software object requiring no separate source code for user interfaces, testing or deployment. This formulation makes our framework ideal for developing novel, stable and easy-to-use algorithms for medical image analysis and computer assisted interventions. The framework has been both deployed at Yale and released for public use in the open source multi-platform image analysis software—BioImage Suite (bioimagesuite.org). PMID:21249532

  10. Formal Specification and Validation of a Hybrid Connectivity Restoration Algorithm for Wireless Sensor and Actor Networks †

    PubMed Central

    Imran, Muhammad; Zafar, Nazir Ahmad

    2012-01-01

    Maintaining inter-actor connectivity is extremely crucial in mission-critical applications of Wireless Sensor and Actor Networks (WSANs), as actors have to quickly plan optimal coordinated responses to detected events. Failure of a critical actor partitions the inter-actor network into disjoint segments besides leaving a coverage hole, and thus hinders the network operation. This paper presents a Partitioning detection and Connectivity Restoration (PCR) algorithm to tolerate critical actor failure. As part of pre-failure planning, PCR determines critical/non-critical actors based on localized information and designates each critical node with an appropriate backup (preferably non-critical). The pre-designated backup detects the failure of its primary actor and initiates a post-failure recovery process that may involve coordinated multi-actor relocation. To prove the correctness, we construct a formal specification of PCR using Z notation. We model WSAN topology as a dynamic graph and transform PCR to corresponding formal specification using Z notation. Formal specification is analyzed and validated using the Z Eves tool. Moreover, we simulate the specification to quantitatively analyze the efficiency of PCR. Simulation results confirm the effectiveness of PCR and the results shown that it outperforms contemporary schemes found in the literature.

  11. Development of Fast Algorithms Using Recursion, Nesting and Iterations for Computational Electromagnetics

    NASA Technical Reports Server (NTRS)

    Chew, W. C.; Song, J. M.; Lu, C. C.; Weedon, W. H.

    1995-01-01

    In the first phase of our work, we have concentrated on laying the foundation to develop fast algorithms, including the use of recursive structure like the recursive aggregate interaction matrix algorithm (RAIMA), the nested equivalence principle algorithm (NEPAL), the ray-propagation fast multipole algorithm (RPFMA), and the multi-level fast multipole algorithm (MLFMA). We have also investigated the use of curvilinear patches to build a basic method of moments code where these acceleration techniques can be used later. In the second phase, which is mainly reported on here, we have concentrated on implementing three-dimensional NEPAL on a massively parallel machine, the Connection Machine CM-5, and have been able to obtain some 3D scattering results. In order to understand the parallelization of codes on the Connection Machine, we have also studied the parallelization of 3D finite-difference time-domain (FDTD) code with PML material absorbing boundary condition (ABC). We found that simple algorithms like the FDTD with material ABC can be parallelized very well allowing us to solve within a minute a problem of over a million nodes. In addition, we have studied the use of the fast multipole method and the ray-propagation fast multipole algorithm to expedite matrix-vector multiplication in a conjugate-gradient solution to integral equations of scattering. We find that these methods are faster than LU decomposition for one incident angle, but are slower than LU decomposition when many incident angles are needed as in the monostatic RCS calculations.

  12. Developing NASA's VIIRS LST and Emissivity EDRs using a physics based Temperature Emissivity Separation (TES) algorithm

    NASA Astrophysics Data System (ADS)

    Islam, T.; Hulley, G. C.; Malakar, N.; Hook, S. J.

    2015-12-01

    Land Surface Temperature and Emissivity (LST&E) data are acknowledged as critical Environmental Data Records (EDRs) by the NASA Earth Science Division. The current operational LST EDR for the recently launched Suomi National Polar-orbiting Partnership's (NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) payload utilizes a split-window algorithm that relies on previously-generated fixed emissivity dependent coefficients and does not produce a dynamically varying and multi-spectral land surface emissivity product. Furthermore, this algorithm deviates from its MODIS counterpart (MOD11) resulting in a discontinuity in the MODIS/VIIRS LST time series. This study presents an alternative physics based algorithm for generation of the NASA VIIRS LST&E EDR in order to provide continuity with its MODIS counterpart algorithm (MOD21). The algorithm, known as temperature emissivity separation (TES) algorithm, uses a fast radiative transfer model - Radiative Transfer for (A)TOVS (RTTOV) in combination with an emissivity calibration model to isolate the surface radiance contribution retrieving temperature and emissivity. Further, a new water-vapor scaling (WVS) method is developed and implemented to improve the atmospheric correction process within the TES system. An independent assessment of the VIIRS LST&E outputs is performed against in situ LST measurements and laboratory measured emissivity spectra samples over dedicated validation sites in the Southwest USA. Emissivity retrievals are also validated with the latest ASTER Global Emissivity Database Version 4 (GEDv4). An overview and current status of the algorithm as well as the validation results will be discussed.

  13. Economic development and fertility: a note on functional form specification.

    PubMed

    Bollen, K A; Entwisle, B

    1984-01-01

    Beginning with a brief review of cross-national fertility research, this research note examines the cross-national relationship between economic development and fertility levels and documents 4 major ways in which the development-fertility relation has been modeled. It then evaluates the fit of these functional forms, according to theoretical expectations and using cross-national data for 114 countries in 1975. A table summarizes major corss-national studies that include a development indicator as a determinant of fertility levels in a multivariate analysis. A column of the table indicates the form of the development-fertility relatnship assumed, validating the earlier assertion that most analyses have incorporated a linear specification. Yet, a few studies have allowed for curvilinearity. Another column of the table reports the sign and statistical significance of the development term. The note documents curvilinearity in the relationship between economic development and fertility levels for the sample of 114 countries in 1975. Of the 4 functional forms used in cross-national research, the exponential transformation suggested by Saunders and Reinhart (1967) leads to a fitted curve that is closer to curves associated with the demographic transition and has a better fit to the data than do the linear or logarithmic forms. Since most cross-national studies assume a linear relationship, the cumulation of this research may provide misleading information about the importance of development in bringing down the fertility levels of 3rd world nations. The apparent strength of development effects depends on which part of the curve is represented in the data. Frequent inappropriate use of a linear specification to describe a curvilinear relationship may account not only for the widely varying estimates of development effects in previous cross-national studies but for the infrequency with which statistially significant, inverse development-fertility relationships are found

  14. Plant vascular development: from early specification to differentiation.

    PubMed

    De Rybel, Bert; Mähönen, Ari Pekka; Helariutta, Yrjö; Weijers, Dolf

    2016-01-01

    Vascular tissues in plants are crucial to provide physical support and to transport water, sugars and hormones and other small signalling molecules throughout the plant. Recent genetic and molecular studies have identified interconnections among some of the major signalling networks that regulate plant vascular development. Using Arabidopsis thaliana as a model system, these studies enable the description of vascular development from the earliest tissue specification events during embryogenesis to the differentiation of phloem and xylem tissues. Moreover, we propose a model for how oriented cell divisions give rise to a three-dimensional vascular bundle within the root meristem.

  15. Battery algorithm verification and development using hardware-in-the-loop testing

    NASA Astrophysics Data System (ADS)

    He, Yongsheng; Liu, Wei; Koch, Brain J.

    Battery algorithms play a vital role in hybrid electric vehicles (HEVs), plug-in hybrid electric vehicles (PHEVs), extended-range electric vehicles (EREVs), and electric vehicles (EVs). The energy management of hybrid and electric propulsion systems needs to rely on accurate information on the state of the battery in order to determine the optimal electric drive without abusing the battery. In this study, a cell-level hardware-in-the-loop (HIL) system is used to verify and develop state of charge (SOC) and power capability predictions of embedded battery algorithms for various vehicle applications. Two different batteries were selected as representative examples to illustrate the battery algorithm verification and development procedure. One is a lithium-ion battery with a conventional metal oxide cathode, which is a power battery for HEV applications. The other is a lithium-ion battery with an iron phosphate (LiFePO 4) cathode, which is an energy battery for applications in PHEVs, EREVs, and EVs. The battery cell HIL testing provided valuable data and critical guidance to evaluate the accuracy of the developed battery algorithms, to accelerate battery algorithm future development and improvement, and to reduce hybrid/electric vehicle system development time and costs.

  16. Advancements in the Development of an Operational Lightning Jump Algorithm for GOES-R GLM

    NASA Technical Reports Server (NTRS)

    Shultz, Chris; Petersen, Walter; Carey, Lawrence

    2011-01-01

    Rapid increases in total lightning have been shown to precede the manifestation of severe weather at the surface. These rapid increases have been termed lightning jumps, and are the current focus of algorithm development for the GOES-R Geostationary Lightning Mapper (GLM). Recent lightning jump algorithm work has focused on evaluation of algorithms in three additional regions of the country, as well as, markedly increasing the number of thunderstorms in order to evaluate the each algorithm s performance on a larger population of storms. Lightning characteristics of just over 600 thunderstorms have been studied over the past four years. The 2 lightning jump algorithm continues to show the most promise for an operational lightning jump algorithm, with a probability of detection of 82%, a false alarm rate of 35%, a critical success index of 57%, and a Heidke Skill Score of 0.73 on the entire population of thunderstorms. Average lead time for the 2 algorithm on all severe weather is 21.15 minutes, with a standard deviation of +/- 14.68 minutes. Looking at tornadoes alone, the average lead time is 18.71 minutes, with a standard deviation of +/-14.88 minutes. Moreover, removing the 2 lightning jumps that occur after a jump has been detected, and before severe weather is detected at the ground, the 2 lightning jump algorithm s false alarm rate drops from 35% to 21%. Cold season, low topped, and tropical environments cause problems for the 2 lightning jump algorithm, due to their relative dearth in lightning as compared to a supercellular or summertime airmass thunderstorm environment.

  17. The development of a scalable parallel 3-D CFD algorithm for turbomachinery. M.S. Thesis Final Report

    NASA Technical Reports Server (NTRS)

    Luke, Edward Allen

    1993-01-01

    Two algorithms capable of computing a transonic 3-D inviscid flow field about rotating machines are considered for parallel implementation. During the study of these algorithms, a significant new method of measuring the performance of parallel algorithms is developed. The theory that supports this new method creates an empirical definition of scalable parallel algorithms that is used to produce quantifiable evidence that a scalable parallel application was developed. The implementation of the parallel application and an automated domain decomposition tool are also discussed.

  18. Bobcat 2013: a hyperspectral data collection supporting the development and evaluation of spatial-spectral algorithms

    NASA Astrophysics Data System (ADS)

    Kaufman, Jason; Celenk, Mehmet; White, A. K.; Stocker, Alan D.

    2014-06-01

    The amount of hyperspectral imagery (HSI) data currently available is relatively small compared to other imaging modalities, and what is suitable for developing, testing, and evaluating spatial-spectral algorithms is virtually nonexistent. In this work, a significant amount of coincident airborne hyperspectral and high spatial resolution panchromatic imagery that supports the advancement of spatial-spectral feature extraction algorithms was collected to address this need. The imagery was collected in April 2013 for Ohio University by the Civil Air Patrol, with their Airborne Real-time Cueing Hyperspectral Enhanced Reconnaissance (ARCHER) sensor. The target materials, shapes, and movements throughout the collection area were chosen such that evaluation of change detection algorithms, atmospheric compensation techniques, image fusion methods, and material detection and identification algorithms is possible. This paper describes the collection plan, data acquisition, and initial analysis of the collected imagery.

  19. Development of a two wheeled self balancing robot with speech recognition and navigation algorithm

    NASA Astrophysics Data System (ADS)

    Rahman, Md. Muhaimin; Ashik-E-Rasul, Haq, Nowab. Md. Aminul; Hassan, Mehedi; Hasib, Irfan Mohammad Al; Hassan, K. M. Rafidh

    2016-07-01

    This paper is aimed to discuss modeling, construction and development of navigation algorithm of a two wheeled self balancing mobile robot in an enclosure. In this paper, we have discussed the design of two of the main controller algorithms, namely PID algorithms, on the robot model. Simulation is performed in the SIMULINK environment. The controller is developed primarily for self-balancing of the robot and also it's positioning. As for the navigation in an enclosure, template matching algorithm is proposed for precise measurement of the robot position. The navigation system needs to be calibrated before navigation process starts. Almost all of the earlier template matching algorithms that can be found in the open literature can only trace the robot. But the proposed algorithm here can also locate the position of other objects in an enclosure, like furniture, tables etc. This will enable the robot to know the exact location of every stationary object in the enclosure. Moreover, some additional features, such as Speech Recognition and Object Detection, are added. For Object Detection, the single board Computer Raspberry Pi is used. The system is programmed to analyze images captured via the camera, which are then processed through background subtraction, followed by active noise reduction.

  20. Development of a fire detection algorithm for the COMS (Communication Ocean and Meteorological Satellite)

    NASA Astrophysics Data System (ADS)

    Kim, Goo; Kim, Dae Sun; Lee, Yang-Won

    2013-10-01

    The forest fires do much damage to our life in ecological and economic aspects. South Korea is probably more liable to suffer from the forest fire because mountain area occupies more than half of land in South Korea. They have recently launched the COMS(Communication Ocean and Meteorological Satellite) which is a geostationary satellite. In this paper, we developed forest fire detection algorithm using COMS data. Generally, forest fire detection algorithm uses characteristics of 4 and 11 micrometer brightness temperature. Our algorithm additionally uses LST(Land Surface Temperature). We confirmed the result of our fire detection algorithm using statistical data of Korea Forest Service and ASTER(Advanced Spaceborne Thermal Emission and Reflection Radiometer) images. We used the data in South Korea On April 1 and 2, 2011 because there are small and big forest fires at that time. The detection rate was 80% in terms of the frequency of the forest fires and was 99% in terms of the damaged area. Considering the number of COMS's channels and its low resolution, this result is a remarkable outcome. To provide users with the result of our algorithm, we developed a smartphone application for users JSP(Java Server Page). This application can work regardless of the smartphone's operating system. This study can be unsuitable for other areas and days because we used just two days data. To improve the accuracy of our algorithm, we need analysis using long-term data as future work.

  1. A comparison of three self-tuning control algorithms developed for the Bristol-Babcock controller

    SciTech Connect

    Tapp, P.A.

    1992-04-01

    A brief overview of adaptive control methods relating to the design of self-tuning proportional-integral-derivative (PID) controllers is given. The methods discussed include gain scheduling, self-tuning, auto-tuning, and model-reference adaptive control systems. Several process identification and parameter adjustment methods are discussed. Characteristics of the two most common types of self-tuning controllers implemented by industry (i.e., pattern recognition and process identification) are summarized. The substance of the work is a comparison of three self-tuning proportional-plus-integral (STPI) control algorithms developed to work in conjunction with the Bristol-Babcock PID control module. The STPI control algorithms are based on closed-loop cycling theory, pattern recognition theory, and model-based theory. A brief theory of operation of these three STPI control algorithms is given. Details of the process simulations developed to test the STPI algorithms are given, including an integrating process, a first-order system, a second-order system, a system with initial inverse response, and a system with variable time constant and delay. The STPI algorithms' performance with regard to both setpoint changes and load disturbances is evaluated, and their robustness is compared. The dynamic effects of process deadtime and noise are also considered. Finally, the limitations of each of the STPI algorithms is discussed, some conclusions are drawn from the performance comparisons, and a few recommendations are made. 6 refs.

  2. A comparison of three self-tuning control algorithms developed for the Bristol-Babcock controller

    SciTech Connect

    Tapp, P.A.

    1992-04-01

    A brief overview of adaptive control methods relating to the design of self-tuning proportional-integral-derivative (PID) controllers is given. The methods discussed include gain scheduling, self-tuning, auto-tuning, and model-reference adaptive control systems. Several process identification and parameter adjustment methods are discussed. Characteristics of the two most common types of self-tuning controllers implemented by industry (i.e., pattern recognition and process identification) are summarized. The substance of the work is a comparison of three self-tuning proportional-plus-integral (STPI) control algorithms developed to work in conjunction with the Bristol-Babcock PID control module. The STPI control algorithms are based on closed-loop cycling theory, pattern recognition theory, and model-based theory. A brief theory of operation of these three STPI control algorithms is given. Details of the process simulations developed to test the STPI algorithms are given, including an integrating process, a first-order system, a second-order system, a system with initial inverse response, and a system with variable time constant and delay. The STPI algorithms` performance with regard to both setpoint changes and load disturbances is evaluated, and their robustness is compared. The dynamic effects of process deadtime and noise are also considered. Finally, the limitations of each of the STPI algorithms is discussed, some conclusions are drawn from the performance comparisons, and a few recommendations are made. 6 refs.

  3. Wasatch: An architecture-proof multiphysics development environment using a Domain Specific Language and graph theory

    DOE PAGES

    Saad, Tony; Sutherland, James C.

    2016-05-04

    To address the coding and software challenges of modern hybrid architectures, we propose an approach to multiphysics code development for high-performance computing. This approach is based on using a Domain Specific Language (DSL) in tandem with a directed acyclic graph (DAG) representation of the problem to be solved that allows runtime algorithm generation. When coupled with a large-scale parallel framework, the result is a portable development framework capable of executing on hybrid platforms and handling the challenges of multiphysics applications. In addition, we share our experience developing a code in such an environment – an effort that spans an interdisciplinarymore » team of engineers and computer scientists.« less

  4. Wasatch: An architecture-proof multiphysics development environment using a Domain Specific Language and graph theory

    DOE PAGES

    Saad, Tony; Sutherland, James C.

    2016-05-04

    To address the coding and software challenges of modern hybrid architectures, we propose an approach to multiphysics code development for high-performance computing. This approach is based on using a Domain Specific Language (DSL) in tandem with a directed acyclic graph (DAG) representation of the problem to be solved that allows runtime algorithm generation. When coupled with a large-scale parallel framework, the result is a portable development framework capable of executing on hybrid platforms and handling the challenges of multiphysics applications. In conclusion, we share our experience developing a code in such an environment – an effort that spans an interdisciplinarymore » team of engineers and computer scientists.« less

  5. Development of a rule-based algorithm for rice cultivation mapping using Landsat 8 time series

    NASA Astrophysics Data System (ADS)

    Karydas, Christos G.; Toukiloglou, Pericles; Minakou, Chara; Gitas, Ioannis Z.

    2015-06-01

    In the framework of ERMES project (FP7 66983), an algorithm for mapping rice cultivation extents using mediumhigh resolution satellite data was developed. ERMES (An Earth obseRvation Model based RicE information Service) aims to develop a prototype of downstream service for rice yield modelling based on a combination of Earth Observation and in situ data. The algorithm was designed as a set of rules applied on a time series of Landsat 8 images, acquired throughout the rice cultivation season of 2014 from the plain of Thessaloniki, Greece. The rules rely on the use of spectral indices, such as the Normalized Difference Vegetation Index (NDVI), the Normalized Difference Water Index (NDWI), and the Normalized Seasonal Wetness Index (NSWI), extracted from the Landsat 8 dataset. The algorithm is subdivided into two phases: a) a hard classification phase, resulting in a binary map (rice/no-rice), where pixels are judged according to their performance in all the images of the time series, while index thresholds were defined after a trial and error approach; b) a soft classification phase, resulting in a fuzzy map, by assigning scores to the pixels which passed (as `rice') the first phase. Finally, a user-defined threshold of the fuzzy score will discriminate rice from no-rice pixels in the output map. The algorithm was tested in a subset of Thessaloniki plain against a set of selected field data. The results indicated an overall accuracy of the algorithm higher than 97%. The algorithm was also applied in a study are in Spain (Valencia) and a preliminary test indicated a similar performance, i.e. about 98%. Currently, the algorithm is being modified, so as to map rice extents early in the cultivation season (by the end of June), with a view to contribute more substantially to the rice yield prediction service of ERMES. Both algorithm modes (late and early) are planned to be tested in extra Mediterranean study areas, in Greece, Italy, and Spain.

  6. Development of sleep apnea syndrome screening algorithm by using heart rate variability analysis and support vector machine.

    PubMed

    Nakayama, Chikao; Fujiwara, Koichi; Matsuo, Masahiro; Kano, Manabu; Kadotani, Hiroshi

    2015-08-01

    Although sleep apnea syndrome (SAS) is a common sleep disorder, most patients with sleep apnea are undiagnosed and untreated because it is difficult for patients themselves to notice SAS in daily living. Polysomnography (PSG) is a gold standard test for sleep disorder diagnosis, however PSG cannot be performed in many hospitals. This fact motivates us to develop an SAS screening system that can be used easily at home. The autonomic nervous function of a patient changes during apnea. Since changes in the autonomic nervous function affect fluctuation of the R-R interval (RRI) of an electrocardiogram (ECG), called heart rate variability (HRV), SAS can be detected through monitoring HRV. The present work proposes a new HRV-based SAS screening algorithm by utilizing support vector machine (SVM), which is a well-known pattern recognition method. In the proposed algorithm, various HRV features are derived from RRI data in both apnea and normal respiration periods of patients and healthy people, and an apnea/normal respiration (A/N) discriminant model is built from the derived HRV features by SVM. The result of applying the proposed SAS screening algorithm to clinical data demonstrates that it can discriminate patients with sleep apnea and healthy people appropriately. The sensitivity and the specificity of the proposed algorithm were 100% and 86%, respectively.

  7. Automated Development of Accurate Algorithms and Efficient Codes for Computational Aeroacoustics

    NASA Technical Reports Server (NTRS)

    Goodrich, John W.; Dyson, Rodger W.

    1999-01-01

    The simulation of sound generation and propagation in three space dimensions with realistic aircraft components is a very large time dependent computation with fine details. Simulations in open domains with embedded objects require accurate and robust algorithms for propagation, for artificial inflow and outflow boundaries, and for the definition of geometrically complex objects. The development, implementation, and validation of methods for solving these demanding problems is being done to support the NASA pillar goals for reducing aircraft noise levels. Our goal is to provide algorithms which are sufficiently accurate and efficient to produce usable results rapidly enough to allow design engineers to study the effects on sound levels of design changes in propulsion systems, and in the integration of propulsion systems with airframes. There is a lack of design tools for these purposes at this time. Our technical approach to this problem combines the development of new, algorithms with the use of Mathematica and Unix utilities to automate the algorithm development, code implementation, and validation. We use explicit methods to ensure effective implementation by domain decomposition for SPMD parallel computing. There are several orders of magnitude difference in the computational efficiencies of the algorithms which we have considered. We currently have new artificial inflow and outflow boundary conditions that are stable, accurate, and unobtrusive, with implementations that match the accuracy and efficiency of the propagation methods. The artificial numerical boundary treatments have been proven to have solutions which converge to the full open domain problems, so that the error from the boundary treatments can be driven as low as is required. The purpose of this paper is to briefly present a method for developing highly accurate algorithms for computational aeroacoustics, the use of computer automation in this process, and a brief survey of the algorithms that

  8. Development of a lion-specific interferon-gamma assay.

    PubMed

    Maas, M; van Kooten, P J S; Schreuder, J; Morar, D; Tijhaar, E; Michel, A L; Rutten, V P M G

    2012-10-15

    The ongoing spread of bovine tuberculosis (BTB) in African free-ranging lion populations, for example in the Kruger National Park, raises the need for diagnostic assays for BTB in lions. These, in addition, would be highly relevant for zoological gardens worldwide that want to determine the BTB status of their lions, e.g. for translocations. The present study concerns the development of a lion-specific IFN-γ assay, following the production and characterization of monoclonal antibodies specific for lion interferon-gamma (IFN-γ). Recombinant lion IFN-γ (rLIFN-γ) was produced in mammalian cells and used to immunize mice to establish hybridoma cell lines producing monoclonal antibodies. These were used to develop a sensitive, lion IFN-γ-specific capture ELISA, able to detect rLIFN-γ to the level of 160 pg/ml. Recognition of native lion IFN-γ was shown in an initial assessment of supernatants of mitogen stimulated whole blood cultures of 11 known BTB-negative lions. In conclusion, the capture ELISA shows potential as a diagnostic assay for bovine tuberculosis in lions. Preliminary results also indicate the possible use of the test for other (feline) species.

  9. Statistical Physics of T-Cell Development and Pathogen Specificity

    NASA Astrophysics Data System (ADS)

    Košmrlj, Andrej; Kardar, Mehran; Chakraborty, Arup K.

    2013-04-01

    In addition to an innate immune system that battles pathogens in a nonspecific fashion, higher organisms, such as humans, possess an adaptive immune system to combat diverse (and evolving) microbial pathogens. Remarkably, the adaptive immune system mounts pathogen-specific responses, which can be recalled upon reinfection with the same pathogen. It is difficult to see how the adaptive immune system can be preprogrammed to respond specifically to a vast and unknown set of pathogens. Although major advances have been made in understanding pertinent molecular and cellular phenomena, the precise principles that govern many aspects of an immune response are largely unknown. We discuss complementary approaches from statistical mechanics and cell biology that can shed light on how key components of the adaptive immune system, T cells, develop to enable pathogen-specific responses against many diverse pathogens. The mechanistic understanding that emerges has implications for how host genetics may influence the development of T cells with differing responses to the human immunodeficiency virus (HIV) infection.

  10. [Development of Specific Therapy to Category A Toxic Infections].

    PubMed

    Kolesnikov, A V; Ryabko, A K; Shemyakin, I G; Kozyr, A V

    2015-01-01

    Category A select agents continue to be major threat to human population both as naturally occurring diseases and as potential weapon of bioterrorists. Anthrax and botulism are probably the most threatening agents as both have virtually uncontrolled natural reservoirs from which they can be isolated and propagated. Available specific antitoxin therapy of both diseases is outdated; its efficiency is questionable as well as safety of reactogenic or human-derived components used in treatment. Highly sensitive toxin detection techniques are still not as widespread as it needed for timely alerting medical services. There is urgent need of pre-exposure prophylaxis and postexposure specific antitoxin therapy for anthrax and botulism. Analysis of modern studies in the field suggests oligoclonal antibodies acting against receptor-binding toxin subunits and nucleic acid aptamers as allosteric inhibitors of metlloproteolytic toxin components as the most promising candidates for development of efficient antitoxin therapy. PMID:26710525

  11. Decoding neural events from fMRI BOLD signal: A comparison of existing approaches and development of a new algorithm

    PubMed Central

    Bush, Keith; Cisler, Josh

    2013-01-01

    Neuroimaging methodology predominantly relies on the blood oxygenation level dependent (BOLD) signal. While the BOLD signal is a valid measure of neuronal activity, variance in fluctuations of the BOLD signal are not only due to fluctuations in neural activity. Thus, a remaining problem in neuroimaging analyses is developing methods that ensure specific inferences about neural activity that are not confounded by unrelated sources of noise in the BOLD signal. Here, we develop and test a new algorithm for performing semi-blind (i.e., no knowledge of stimulus timings) deconvolution of the BOLD signal that treats the neural event as an observable, but intermediate, probabilistic representation of the system’s state. We test and compare this new algorithm against three other recent deconvolution algorithms under varied levels of autocorrelated and Gaussian noise, hemodynamic response function (HRF) misspecification, and observation sampling rate (i.e., TR). Further, we compare the algorithms’ performance using two models to simulate BOLD data: a convolution of neural events with a known (or misspecified) HRF versus a biophysically accurate balloon model of hemodynamics. We also examine the algorithms’ performance on real task data. The results demonstrated good performance of all algorithms, though the new algorithm generally outperformed the others (3.0% improvement) under simulated resting state experimental conditions exhibiting multiple, realistic confounding factors (as well as 10.3% improvement on a real Stroop task). The simulations also demonstrate that the greatest negative influence on deconvolution accuracy is observation sampling rate. Practical and theoretical implications of these results for improving inferences about neural activity from fMRI BOLD signal are discussed. PMID:23602664

  12. Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions.

    PubMed Central

    Ulyanov, A V; Stormo, G D

    1995-01-01

    A method for the identification and characterization of protein-DNA interactions is presented. We have developed an approach for finding unknown multiple patterns that occur imperfectly in a set of several sequences. The pattern may contain letters from the nucleotide alphabet (A, C, G and T) including ambiguous characters (A/C, A/G, A/T; A/C/G, etc.). This method reveals weak DNA signals on an unaligned set of DNA fragments known to be functionally related and assumes no prior information on the sequences' alignment. It determines the locations of the signals from only the information intrinsic to the sequences themselves. We have applied this method to analyze the binding sites of cAMP receptor protein (CRP). The consensus based on these data are discussed and a comparison of the consensus with the crystal structure of CAP-DNA complex is presented. We further show that in a mixture of DNA sequences, containing binding sites for two different proteins, both classes of binding sites can be discovered simultaneously by this method. The DNA sequences of nucleosome cores from chicken erythrocyte and a set of the other known nucleosomal sequences show existence of symmetrical features in nucleosome-binding DNA sequences. We also show multi-alphabet patterns that can play a role in the phasing signal on the nucleosome DNA molecule and have compared the results with existing models of nucleosome positioning. PMID:7753637

  13. Genetic algorithms

    NASA Technical Reports Server (NTRS)

    Wang, Lui; Bayer, Steven E.

    1991-01-01

    Genetic algorithms are mathematical, highly parallel, adaptive search procedures (i.e., problem solving methods) based loosely on the processes of natural genetics and Darwinian survival of the fittest. Basic genetic algorithms concepts are introduced, genetic algorithm applications are introduced, and results are presented from a project to develop a software tool that will enable the widespread use of genetic algorithm technology.

  14. Correlation signatures of wet soils and snows. [algorithm development and computer programming

    NASA Technical Reports Server (NTRS)

    Phillips, M. R.

    1972-01-01

    Interpretation, analysis, and development of algorithms have provided the necessary computational programming tools for soil data processing, data handling and analysis. Algorithms that have been developed thus far, are adequate and have been proven successful for several preliminary and fundamental applications such as software interfacing capabilities, probability distributions, grey level print plotting, contour plotting, isometric data displays, joint probability distributions, boundary mapping, channel registration and ground scene classification. A description of an Earth Resources Flight Data Processor, (ERFDP), which handles and processes earth resources data under a users control is provided.

  15. Structure and Specificity of GATA Proteins in Th2 Development

    PubMed Central

    Ranganath, Sheila; Murphy, Kenneth M.

    2001-01-01

    Development of Th2 subset of CD4+ T cells involves the interleukin-4 (IL-4)- and Stat6-dependent increase in GATA-3 expression during primary activation. Recently we reported that the phenotypic stability and factor independence of Th2 cells involves acquisition of an intracellular pathway that maintains GATA-3 expression. Evidence from retroviral expression studies implied that this pathway involved an autoactivation of GATA-3 expression, since Stat6-deficient T cells induced endogenous GATA-3 when infected with GATA-3-expressing retroviruses. That study left unresolved the issue of whether GATA-3 autoactivation was direct or indirect. Several other Th2-specific transcription factors have been described, including c-Maf and JunB. We therefore examined the ability of these other transcription factors to induce GATA-3 expression and promote Th2 development. Neither c-Maf nor JunB induced Th2 development in Stat6-deficient CD4+ T cells, in contrast to GATA-3. Consistent with this indication of a possible direct autoactivation pathway, we also observed that heterologous GATA family proteins GATA-1, GATA-2, and GATA-4 were also capable of inducing GATA-3 expression in developing Stat6-deficient T cells and promote Th2 development. Mutational analysis revealed evidence for two distinct mechanisms of GATA-3 action. IL-4 induction by GATA-3 required each of the functional domains to be present, whereas repression of gamma interferon could occur even when mutants of GATA-3 lacking the second transactivation domain, TA2, were expressed. The GATA-dependent induction of the GATA-3 but not the other GATA genes in T cells suggests that T-cell-specific cis elements within the GATA-3 locus likely cooperate with a general GATA recognition motif to allow GATA-3-dependent autoactivation. PMID:11283251

  16. Developing Subdomain Allocation Algorithms Based on Spatial and Communicational Constraints to Accelerate Dust Storm Simulation

    PubMed Central

    Gui, Zhipeng; Yu, Manzhu; Yang, Chaowei; Jiang, Yunfeng; Chen, Songqing; Xia, Jizhe; Huang, Qunying; Liu, Kai; Li, Zhenlong; Hassan, Mohammed Anowarul; Jin, Baoxuan

    2016-01-01

    Dust storm has serious disastrous impacts on environment, human health, and assets. The developments and applications of dust storm models have contributed significantly to better understand and predict the distribution, intensity and structure of dust storms. However, dust storm simulation is a data and computing intensive process. To improve the computing performance, high performance computing has been widely adopted by dividing the entire study area into multiple subdomains and allocating each subdomain on different computing nodes in a parallel fashion. Inappropriate allocation may introduce imbalanced task loads and unnecessary communications among computing nodes. Therefore, allocation is a key factor that may impact the efficiency of parallel process. An allocation algorithm is expected to consider the computing cost and communication cost for each computing node to minimize total execution time and reduce overall communication cost for the entire simulation. This research introduces three algorithms to optimize the allocation by considering the spatial and communicational constraints: 1) an Integer Linear Programming (ILP) based algorithm from combinational optimization perspective; 2) a K-Means and Kernighan-Lin combined heuristic algorithm (K&K) integrating geometric and coordinate-free methods by merging local and global partitioning; 3) an automatic seeded region growing based geometric and local partitioning algorithm (ASRG). The performance and effectiveness of the three algorithms are compared based on different factors. Further, we adopt the K&K algorithm as the demonstrated algorithm for the experiment of dust model simulation with the non-hydrostatic mesoscale model (NMM-dust) and compared the performance with the MPI default sequential allocation. The results demonstrate that K&K method significantly improves the simulation performance with better subdomain allocation. This method can also be adopted for other relevant atmospheric and numerical

  17. Developing Subdomain Allocation Algorithms Based on Spatial and Communicational Constraints to Accelerate Dust Storm Simulation.

    PubMed

    Gui, Zhipeng; Yu, Manzhu; Yang, Chaowei; Jiang, Yunfeng; Chen, Songqing; Xia, Jizhe; Huang, Qunying; Liu, Kai; Li, Zhenlong; Hassan, Mohammed Anowarul; Jin, Baoxuan

    2016-01-01

    Dust storm has serious disastrous impacts on environment, human health, and assets. The developments and applications of dust storm models have contributed significantly to better understand and predict the distribution, intensity and structure of dust storms. However, dust storm simulation is a data and computing intensive process. To improve the computing performance, high performance computing has been widely adopted by dividing the entire study area into multiple subdomains and allocating each subdomain on different computing nodes in a parallel fashion. Inappropriate allocation may introduce imbalanced task loads and unnecessary communications among computing nodes. Therefore, allocation is a key factor that may impact the efficiency of parallel process. An allocation algorithm is expected to consider the computing cost and communication cost for each computing node to minimize total execution time and reduce overall communication cost for the entire simulation. This research introduces three algorithms to optimize the allocation by considering the spatial and communicational constraints: 1) an Integer Linear Programming (ILP) based algorithm from combinational optimization perspective; 2) a K-Means and Kernighan-Lin combined heuristic algorithm (K&K) integrating geometric and coordinate-free methods by merging local and global partitioning; 3) an automatic seeded region growing based geometric and local partitioning algorithm (ASRG). The performance and effectiveness of the three algorithms are compared based on different factors. Further, we adopt the K&K algorithm as the demonstrated algorithm for the experiment of dust model simulation with the non-hydrostatic mesoscale model (NMM-dust) and compared the performance with the MPI default sequential allocation. The results demonstrate that K&K method significantly improves the simulation performance with better subdomain allocation. This method can also be adopted for other relevant atmospheric and numerical

  18. Developing Subdomain Allocation Algorithms Based on Spatial and Communicational Constraints to Accelerate Dust Storm Simulation.

    PubMed

    Gui, Zhipeng; Yu, Manzhu; Yang, Chaowei; Jiang, Yunfeng; Chen, Songqing; Xia, Jizhe; Huang, Qunying; Liu, Kai; Li, Zhenlong; Hassan, Mohammed Anowarul; Jin, Baoxuan

    2016-01-01

    Dust storm has serious disastrous impacts on environment, human health, and assets. The developments and applications of dust storm models have contributed significantly to better understand and predict the distribution, intensity and structure of dust storms. However, dust storm simulation is a data and computing intensive process. To improve the computing performance, high performance computing has been widely adopted by dividing the entire study area into multiple subdomains and allocating each subdomain on different computing nodes in a parallel fashion. Inappropriate allocation may introduce imbalanced task loads and unnecessary communications among computing nodes. Therefore, allocation is a key factor that may impact the efficiency of parallel process. An allocation algorithm is expected to consider the computing cost and communication cost for each computing node to minimize total execution time and reduce overall communication cost for the entire simulation. This research introduces three algorithms to optimize the allocation by considering the spatial and communicational constraints: 1) an Integer Linear Programming (ILP) based algorithm from combinational optimization perspective; 2) a K-Means and Kernighan-Lin combined heuristic algorithm (K&K) integrating geometric and coordinate-free methods by merging local and global partitioning; 3) an automatic seeded region growing based geometric and local partitioning algorithm (ASRG). The performance and effectiveness of the three algorithms are compared based on different factors. Further, we adopt the K&K algorithm as the demonstrated algorithm for the experiment of dust model simulation with the non-hydrostatic mesoscale model (NMM-dust) and compared the performance with the MPI default sequential allocation. The results demonstrate that K&K method significantly improves the simulation performance with better subdomain allocation. This method can also be adopted for other relevant atmospheric and numerical

  19. Robust integration schemes for generalized viscoplasticity with internal-state variables. Part 2: Algorithmic developments and implementation

    NASA Technical Reports Server (NTRS)

    Li, Wei; Saleeb, Atef F.

    1995-01-01

    This two-part report is concerned with the development of a general framework for the implicit time-stepping integrators for the flow and evolution equations in generalized viscoplastic models. The primary goal is to present a complete theoretical formulation, and to address in detail the algorithmic and numerical analysis aspects involved in its finite element implementation, as well as to critically assess the numerical performance of the developed schemes in a comprehensive set of test cases. On the theoretical side, the general framework is developed on the basis of the unconditionally-stable, backward-Euler difference scheme as a starting point. Its mathematical structure is of sufficient generality to allow a unified treatment of different classes of viscoplastic models with internal variables. In particular, two specific models of this type, which are representative of the present start-of-art in metal viscoplasticity, are considered in applications reported here; i.e., fully associative (GVIPS) and non-associative (NAV) models. The matrix forms developed for both these models are directly applicable for both initially isotropic and anisotropic materials, in general (three-dimensional) situations as well as subspace applications (i.e., plane stress/strain, axisymmetric, generalized plane stress in shells). On the computational side, issues related to efficiency and robustness are emphasized in developing the (local) interative algorithm. In particular, closed-form expressions for residual vectors and (consistent) material tangent stiffness arrays are given explicitly for both GVIPS and NAV models, with their maximum sizes 'optimized' to depend only on the number of independent stress components (but independent of the number of viscoplastic internal state parameters). Significant robustness of the local iterative solution is provided by complementing the basic Newton-Raphson scheme with a line-search strategy for convergence. In the present second part of

  20. Structured interview for mild traumatic brain injury after military blast: inter-rater agreement and development of diagnostic algorithm.

    PubMed

    Walker, William C; Cifu, David X; Hudak, Anne M; Goldberg, Gary; Kunz, Richard D; Sima, Adam P

    2015-04-01

    The existing gold standard for diagnosing a suspected previous mild traumatic brain injury (mTBI) is clinical interview. But it is prone to bias, especially for parsing the physical versus psychological effects of traumatic combat events, and its inter-rater reliability is unknown. Several standardized TBI interview instruments have been developed for research use but have similar limitations. Therefore, we developed the Virginia Commonwealth University (VCU) retrospective concussion diagnostic interview, blast version (VCU rCDI-B), and undertook this cross-sectional study aiming to 1) measure agreement among clinicians' mTBI diagnosis ratings, 2) using clinician consensus develop a fully structured diagnostic algorithm, and 3) assess accuracy of this algorithm in a separate sample. Two samples (n = 66; n = 37) of individuals within 2 years of experiencing blast effects during military deployment underwent semistructured interview regarding their worst blast experience. Five highly trained TBI physicians independently reviewed and interpreted the interview content and gave blinded ratings of whether or not the experience was probably an mTBI. Paired inter-rater reliability was extremely variable, with kappa ranging from 0.194 to 0.825. In sample 1, the physician consensus prevalence of probable mTBI was 84%. Using these diagnosis ratings, an algorithm was developed and refined from the fully structured portion of the VCU rCDI-B. The final algorithm considered certain symptom patterns more specific for mTBI than others. For example, an isolated symptom of "saw stars" was deemed sufficient to indicate mTBI, whereas an isolated symptom of "dazed" was not. The accuracy of this algorithm, when applied against the actual physician consensus in sample 2, was almost perfect (correctly classified = 97%; Cohen's kappa = 0.91). In conclusion, we found that highly trained clinicians often disagree on historical blast-related mTBI determinations. A fully structured interview

  1. Structured interview for mild traumatic brain injury after military blast: inter-rater agreement and development of diagnostic algorithm.

    PubMed

    Walker, William C; Cifu, David X; Hudak, Anne M; Goldberg, Gary; Kunz, Richard D; Sima, Adam P

    2015-04-01

    The existing gold standard for diagnosing a suspected previous mild traumatic brain injury (mTBI) is clinical interview. But it is prone to bias, especially for parsing the physical versus psychological effects of traumatic combat events, and its inter-rater reliability is unknown. Several standardized TBI interview instruments have been developed for research use but have similar limitations. Therefore, we developed the Virginia Commonwealth University (VCU) retrospective concussion diagnostic interview, blast version (VCU rCDI-B), and undertook this cross-sectional study aiming to 1) measure agreement among clinicians' mTBI diagnosis ratings, 2) using clinician consensus develop a fully structured diagnostic algorithm, and 3) assess accuracy of this algorithm in a separate sample. Two samples (n = 66; n = 37) of individuals within 2 years of experiencing blast effects during military deployment underwent semistructured interview regarding their worst blast experience. Five highly trained TBI physicians independently reviewed and interpreted the interview content and gave blinded ratings of whether or not the experience was probably an mTBI. Paired inter-rater reliability was extremely variable, with kappa ranging from 0.194 to 0.825. In sample 1, the physician consensus prevalence of probable mTBI was 84%. Using these diagnosis ratings, an algorithm was developed and refined from the fully structured portion of the VCU rCDI-B. The final algorithm considered certain symptom patterns more specific for mTBI than others. For example, an isolated symptom of "saw stars" was deemed sufficient to indicate mTBI, whereas an isolated symptom of "dazed" was not. The accuracy of this algorithm, when applied against the actual physician consensus in sample 2, was almost perfect (correctly classified = 97%; Cohen's kappa = 0.91). In conclusion, we found that highly trained clinicians often disagree on historical blast-related mTBI determinations. A fully structured interview

  2. GIM3E: Condition-specific Models of Cellular Metabolism Developed from Metabolomics and Expression Data

    SciTech Connect

    Schmidt, Brian; Ebrahim, Ali; Metz, Thomas O.; Adkins, Joshua N.; Palsson, Bernard O.; Hyduke, Daniel R.

    2013-11-15

    Motivation: Genome-scale metabolic models have been used extensively to investigate alterations in cellular metabolism. The accuracy of these models to represent cellular metabolism in specific conditions has been improved by constraining the model with omics data sources. However, few practical methods for integrating metabolomics data with other omics data sources into genome-scale models of metabolism have been reported. Results: GIMMME (Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression) is an algorithm that enables the development of condition-specific models based on an objective function, transcriptomics, and intracellular metabolomics data. GIMMME establishes metabolite utilization requirements with metabolomics data, uses model-paired transcriptomics data to find experimentally supported solutions, and also provides calculations of the turnover (production / consumption) flux of metabolites. GIMMME was employed to investigate the effects of integrating additional omics datasets to create increasingly constrained solution spaces of Salmonella Typhimurium metabolism during growth in both rich and virulence media. This integration proved to be informative and resulted in a requirement of additional active reactions (12 in each case) or metabolites (26 or 29, respectively). The addition of constraints from transcriptomics also impacted the allowed solution space, and the cellular metabolites with turnover fluxes that were necessarily altered by the change in conditions increased from 118 to 271 of 1397. Availability: GIMMME has been implemented in Python and requires a COBRApy 0.2.x. The algorithm and sample data described here are freely available at: http://opencobra.sourceforge.net/

  3. Endocannabinoid functions controlling neuronal specification during brain development.

    PubMed

    Harkany, Tibor; Keimpema, Erik; Barabás, Klaudia; Mulder, Jan

    2008-04-16

    Endocannabinoids (eCBs) regulate a broad range of physiological functions in the postnatal brain and are implicated in the neuropathogenesis of psychiatric and metabolic diseases. Accumulating evidence indicates that eCB signaling also serves key functions during neurodevelopment; and is inherently involved in the control of neurogenesis, neural progenitor proliferation, lineage segregation, and the migration and phenotypic specification of immature neurons. Recent advances in developmental biology define fundamental eCB-driven cellular mechanisms that also contribute to our understanding of the molecular substrates of prenatal drug, in particular cannabis, actions. Here, we summarize known organizing principles of eCB-signaling systems in the developing telencephalon, and outline the sequence of decision points and underlying signaling pathways upon CB1 cannabinoid receptor activation that contribute to neuronal diversification in the developing brain. Finally, we discuss how these novel principles affect the formation of complex neuronal networks.

  4. High-order derivative spectroscopy for selecting spectral regions and channels for remote sensing algorithm development

    NASA Astrophysics Data System (ADS)

    Bostater, Charles R., Jr.

    1999-12-01

    A remote sensing reflectance model, which describes the transfer of irradiant light within a plant canopy or water column has previously been used to simulate the nadir viewing reflectance of vegetation canopies and leaves under solar induced or an artificial light source and the water surface reflectance. Wavelength dependent features such as canopy reflectance leaf absorption and canopy bottom reflectance as well as water absorption and water bottom reflectance have been used to simulate or generate synthetic canopy and water surface reflectance signatures. This paper describes how derivative spectroscopy can be utilized to invert the synthetic or modeled as well as measured reflectance signatures with the goal of selecting the optimal spectral channels or regions of these environmental media. Specifically, in this paper synthetic and measured reflectance signatures are used for selecting vegetative dysfunction variables for different plant species. The measured reflectance signatures as well as model derived or synthetic signatures are processed using extremely fast higher order derivative processing techniques which filter the synthetic/modeled or measured spectra and automatically selects the optimal channels for automatic and direct algorithm application. The higher order derivative filtering technique makes use of a translating and dilating, derivative spectroscopy signal processing (TDDS-SPR) approach based upon remote sensing science and radiative transfer theory. Thus the technique described, unlike other signal processing techniques being developed for hyperspectral signatures and associated imagery, is based upon radiative transfer theory instead of statistical or purely mathematical operational techniques such as wavelets.

  5. Utilization of Ancillary Data Sets for SMAP Algorithm Development and Product Generation

    NASA Technical Reports Server (NTRS)

    ONeill, P.; Podest, E.; Njoku, E.

    2011-01-01

    Algorithms being developed for the Soil Moisture Active Passive (SMAP) mission require a variety of both static and ancillary data. The selection of the most appropriate source for each ancillary data parameter is driven by a number of considerations, including accuracy, latency, availability, and consistency across all SMAP products and with SMOS (Soil Moisture Ocean Salinity). It is anticipated that initial selection of all ancillary datasets, which are needed for ongoing algorithm development activities on the SMAP algorithm testbed at JPL, will be completed within the year. These datasets will be updated as new or improved sources become available, and all selections and changes will be documented for the benefit of the user community. Wise choices in ancillary data will help to enable SMAP to provide new global measurements of soil moisture and freeze/thaw state at the targeted accuracy necessary to tackle hydrologically-relevant societal issues.

  6. Development and validation of evolutionary algorithm software as an optimization tool for biological and environmental applications.

    PubMed

    Sys, K; Boon, N; Verstraete, W

    2004-06-01

    A flexible, extendable tool for the optimization of (micro)biological processes and protocols using evolutionary algorithms was developed. It has been tested using three different theoretical optimization problems: 2 two-dimensional problems, one with three maxima and one with five maxima and a river autopurification optimization problem with boundary conditions. For each problem, different evolutionary parameter settings were used for the optimization. For each combination of evolutionary parameters, 15 generations were run 20 times. It has been shown that in all cases, the evolutionary algorithm gave rise to valuable results. Generally, the algorithms were able to detect the more stable sub-maximum even if there existed less stable maxima. The latter is, from a practical point of view, generally more desired. The most important factors influencing the convergence process were the parameter value randomization rate and distribution. The developed software, described in this work, is available for free.

  7. Development of a specific anaerobic field test for aerobic gymnastics.

    PubMed

    Alves, Christiano Robles Rodrigues; Borelli, Marcello Tadeu Caetano; Paineli, Vitor de Salles; Azevedo, Rafael de Almeida; Borelli, Claudia Cristine Gomes; Lancha Junior, Antônio Herbert; Gualano, Bruno; Artioli, Guilherme Giannini

    2015-01-01

    The current investigation aimed to develop a valid specific field test to evaluate anaerobic physical performance in Aerobic Gymnastics athletes. We first designed the Specific Aerobic Gymnast Anaerobic Test (SAGAT), which included gymnastics-specific elements performed in maximal repeated sprint fashion, with a total duration of 80-90 s. In order to validate the SAGAT, three independent sub-studies were performed to evaluate the concurrent validity (Study I, n=8), the reliability (Study II, n=10) and the sensitivity (Study III, n=30) of the test in elite female athletes. In Study I, a positive correlation was shown between lower-body Wingate test and SAGAT performance (Mean power: p = 0.03, r = -0.69, CI: -0.94 to 0.03 and Peak power: p = 0.02, r = -0.72, CI: -0.95 to -0.04) and between upper-body Wingate test and SAGAT performance (Mean power: p = 0.03, r = -0.67, CI: -0.94 to 0.02 and Peak power: p = 0.03, r = -0.69, CI: -0.94 to 0.03). Additionally, plasma lactate was similarly increased in response to SAGAT (p = 0.002), lower-body Wingate Test (p = 0.021) and a simulated competition (p = 0.007). In Study II, no differences were found between the time to complete the SAGAT in repeated trials (p = 0.84; Cohen's d effect size = 0.09; ICC = 0.97, CI: 0.89 to 0.99; MDC95 = 0.12 s). Finally, in Study III the time to complete the SAGAT was significantly lower during the competition cycle when compared to the period before the preparatory cycle (p < 0.001), showing an improvement in SAGAT performance after a specific Aerobic Gymnastics training period. Taken together, these data have demonstrated that SAGAT is a specific, reliable and sensitive measurement of specific anaerobic performance in elite female Aerobic Gymnastics, presenting great potential to be largely applied in training settings. PMID:25876039

  8. Development of a Specific Anaerobic Field Test for Aerobic Gymnastics

    PubMed Central

    Paineli, Vitor de Salles; Azevedo, Rafael de Almeida; Borelli, Claudia Cristine Gomes; Lancha Junior, Antônio Herbert; Gualano, Bruno; Artioli, Guilherme Giannini

    2015-01-01

    The current investigation aimed to develop a valid specific field test to evaluate anaerobic physical performance in Aerobic Gymnastics athletes. We first designed the Specific Aerobic Gymnast Anaerobic Test (SAGAT), which included gymnastics-specific elements performed in maximal repeated sprint fashion, with a total duration of 80-90 s. In order to validate the SAGAT, three independent sub-studies were performed to evaluate the concurrent validity (Study I, n=8), the reliability (Study II, n=10) and the sensitivity (Study III, n=30) of the test in elite female athletes. In Study I, a positive correlation was shown between lower-body Wingate test and SAGAT performance (Mean power: p = 0.03, r = -0.69, CI: -0.94 to 0.03 and Peak power: p = 0.02, r = -0.72, CI: -0.95 to -0.04) and between upper-body Wingate test and SAGAT performance (Mean power: p = 0.03, r = -0.67, CI: -0.94 to 0.02 and Peak power: p = 0.03, r = -0.69, CI: -0.94 to 0.03). Additionally, plasma lactate was similarly increased in response to SAGAT (p = 0.002), lower-body Wingate Test (p = 0.021) and a simulated competition (p = 0.007). In Study II, no differences were found between the time to complete the SAGAT in repeated trials (p = 0.84; Cohen’s d effect size = 0.09; ICC = 0.97, CI: 0.89 to 0.99; MDC95 = 0.12 s). Finally, in Study III the time to complete the SAGAT was significantly lower during the competition cycle when compared to the period before the preparatory cycle (p < 0.001), showing an improvement in SAGAT performance after a specific Aerobic Gymnastics training period. Taken together, these data have demonstrated that SAGAT is a specific, reliable and sensitive measurement of specific anaerobic performance in elite female Aerobic Gymnastics, presenting great potential to be largely applied in training settings. PMID:25876039

  9. Applications and development of new algorithms for displacement analysis using InSAR time series

    NASA Astrophysics Data System (ADS)

    Osmanoglu, Batuhan

    -dimensional (3-D) phase unwrapping. Chapter 4 focuses on the unwrapping path. Unwrapping algorithms can be divided into two groups, path-dependent and path-independent algorithms. Path-dependent algorithms use local unwrapping functions applied pixel-by-pixel to the dataset. In contrast, path-independent algorithms use global optimization methods such as least squares, and return a unique solution. However, when aliasing and noise are present, path-independent algorithms can underestimate the signal in some areas due to global fitting criteria. Path-dependent algorithms do not underestimate the signal, but, as the name implies, the unwrapping path can affect the result. Comparison between existing path algorithms and a newly developed algorithm based on Fisher information theory was conducted. Results indicate that Fisher information theory does indeed produce lower misfit results for most tested cases. Chapter 5 presents a new time series analysis method based on 3-D unwrapping of SAR data using extended Kalman filters. Existing methods for time series generation using InSAR data employ special filters to combine two-dimensional (2-D) spatial unwrapping with one-dimensional (1-D) temporal unwrapping results. The new method, however, combines observations in azimuth, range and time for repeat pass interferometry. Due to the pixel-by-pixel characteristic of the filter, the unwrapping path is selected based on a quality map. This unwrapping algorithm is the first application of extended Kalman filters to the 3-D unwrapping problem. Time series analyses of InSAR data are used in a variety of applications with different characteristics. Consequently, it is difficult to develop a single algorithm that can provide optimal results in all cases, given that different algorithms possess a unique set of strengths and weaknesses. Nonetheless, filter-based unwrapping algorithms such as the one presented in this dissertation have the capability of joining multiple observations into a uniform

  10. Intestinal lactoferrin receptor: presence and specificity during development

    SciTech Connect

    Davidson, L.A.; Lonnerdal, B.L.

    1986-03-01

    As the major iron-binding protein in breast milk, lactoferrin (Lf) has been suggested to play a role in Fe absorption from milk. The authors previous work has validated the use of the Rhesus monkey as a model for studying this role of Lf. They have identified a specific Lf receptor on the brush border (BB) of juvenile Rhesus small intestine (s.i.) which may facilitate Fe uptake into the mucosal cell. In this study the authors examined the presence and specificity of the Lf receptor during development. BB membrane vesicles were prepared from fetal (113 d gestation), infant (3 m), and adult (12 y) Rhesus s.i.; Binding assays were performed by incubating BB vesicles with 59-Fe-Lf and filtering through a 0.22 ..mu..m filter. The fetal and infant tissues were found to possess receptors with a high affinity for Lf. This early ontogeny indicates the importance of the receptor to the infant. Adult s.i. contained Lf receptors in all regions. Since the adult has no dietary intake of Lf, the receptor may play a role in Fe homeostasis via biliary Lf excretion or may simply continue to be expressed throughout life. The receptors were examined for their affinity for purified bovine Lf and human transferrin, both of which are similar in structure to Lf. No binding was found for either, demonstrating the specificity of the receptor for Lf. The presence of the Lf receptor in fetal tissue and its specificity for Lf implies it is essential for adequate Fe nutrition of the suckling infant.

  11. Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts

    PubMed Central

    Liao, Katherine P.; Ananthakrishnan, Ashwin N.; Kumar, Vishesh; Xia, Zongqi; Cagan, Andrew; Gainer, Vivian S.; Goryachev, Sergey; Chen, Pei; Savova, Guergana K.; Agniel, Denis; Churchill, Susanne; Lee, Jaeyoung; Murphy, Shawn N.; Plenge, Robert M.; Szolovits, Peter; Kohane, Isaac; Shaw, Stanley Y.; Karlson, Elizabeth W.; Cai, Tianxi

    2015-01-01

    Background Typically, algorithms to classify phenotypes using electronic medical record (EMR) data were developed to perform well in a specific patient population. There is increasing interest in analyses which can allow study of a specific outcome across different diseases. Such a study in the EMR would require an algorithm that can be applied across different patient populations. Our objectives were: (1) to develop an algorithm that would enable the study of coronary artery disease (CAD) across diverse patient populations; (2) to study the impact of adding narrative data extracted using natural language processing (NLP) in the algorithm. Additionally, we demonstrate how to implement CAD algorithm to compare risk across 3 chronic diseases in a preliminary study. Methods and Results We studied 3 established EMR based patient cohorts: diabetes mellitus (DM, n = 65,099), inflammatory bowel disease (IBD, n = 10,974), and rheumatoid arthritis (RA, n = 4,453) from two large academic centers. We developed a CAD algorithm using NLP in addition to structured data (e.g. ICD9 codes) in the RA cohort and validated it in the DM and IBD cohorts. The CAD algorithm using NLP in addition to structured data achieved specificity >95% with a positive predictive value (PPV) 90% in the training (RA) and validation sets (IBD and DM). The addition of NLP data improved the sensitivity for all cohorts, classifying an additional 17% of CAD subjects in IBD and 10% in DM while maintaining PPV of 90%. The algorithm classified 16,488 DM (26.1%), 457 IBD (4.2%), and 245 RA (5.0%) with CAD. In a cross-sectional analysis, CAD risk was 63% lower in RA and 68% lower in IBD compared to DM (p<0.0001) after adjusting for traditional cardiovascular risk factors. Conclusions We developed and validated a CAD algorithm that performed well across diverse patient populations. The addition of NLP into the CAD algorithm improved the sensitivity of the algorithm, particularly in cohorts where the prevalence of

  12. High specificity of line-immunoassay based algorithms for recent HIV-1 infection independent of viral subtype and stage of disease

    PubMed Central

    2011-01-01

    Background Serologic testing algorithms for recent HIV seroconversion (STARHS) provide important information for HIV surveillance. We have shown that a patient's antibody reaction in a confirmatory line immunoassay (INNO-LIATM HIV I/II Score, Innogenetics) provides information on the duration of infection. Here, we sought to further investigate the diagnostic specificity of various Inno-Lia algorithms and to identify factors affecting it. Methods Plasma samples of 714 selected patients of the Swiss HIV Cohort Study infected for longer than 12 months and representing all viral clades and stages of chronic HIV-1 infection were tested blindly by Inno-Lia and classified as either incident (up to 12 m) or older infection by 24 different algorithms. Of the total, 524 patients received HAART, 308 had HIV-1 RNA below 50 copies/mL, and 620 were infected by a HIV-1 non-B clade. Using logistic regression analysis we evaluated factors that might affect the specificity of these algorithms. Results HIV-1 RNA <50 copies/mL was associated with significantly lower reactivity to all five HIV-1 antigens of the Inno-Lia and impaired specificity of most algorithms. Among 412 patients either untreated or with HIV-1 RNA ≥50 copies/mL despite HAART, the median specificity of the algorithms was 96.5% (range 92.0-100%). The only factor that significantly promoted false-incident results in this group was age, with false-incident results increasing by a few percent per additional year. HIV-1 clade, HIV-1 RNA, CD4 percentage, sex, disease stage, and testing modalities exhibited no significance. Results were similar among 190 untreated patients. Conclusions The specificity of most Inno-Lia algorithms was high and not affected by HIV-1 variability, advanced disease and other factors promoting false-recent results in other STARHS. Specificity should be good in any group of untreated HIV-1 patients. PMID:21943091

  13. Algorithm development for the retrieval of coastal water constituents from satellite Modular Optoelectronic Scanner images

    NASA Astrophysics Data System (ADS)

    Hetscher, Matthias; Krawczyk, Harald; Neumann, Andreas; Walzel, Thomas; Zimmermann, Gerhard

    1997-10-01

    DLR's imaging spectrometer the Modular Optoelectronic Scanner (MOS) on the Indian remote sensing satellite IRS-P3 has been orbiting since March 1996. MOS consists of two spectrometers, one narrow band spectrometer around 760 nm for retrieval of atmospheric parameters and a second one in the IVS/NIR region with an additional line camera at 1,6 micrometers . The instrument was especially designed for the remote sensing of coastal zone water and the determination and distinction of its constituents. MOS was developed and manufactured at the Institute of Space Sensor Technology (ISST) and launched in a joint effort with the Indian Space Research Organization (ISRO). The high spectral resolution of MOS offers the possibility of using the differences in spectral signatures of remote sensing objects for quantitative determination of geophysical parameters. In ISST a linear estimator to derive water constituents and aerosol optical thickness has been developed, exploiting Principal Component Inversion (PCI) of modeled top-of- atmosphere and experimental radiance data sets. The estimator results in sets of weighting coefficients for each measurement band, depending on the geophysical situations. Because of systematic misinterpretation due to non- adequateness of model and real situation the further development implies the parallel improvement of used water models and recalibration with in-situ data. The paper will present for selected test sites of the European coasts results of algorithm application. It will show the improvement of the estimated water constituents by using regional specific model parameter. Derived maps of chlorophyll like pigments, sediments and aerosol optical thickness ar presented.

  14. Developments in the Aerosol Layer Height Retrieval Algorithm for the Copernicus Sentinel-4/UVN Instrument

    NASA Astrophysics Data System (ADS)

    Nanda, Swadhin; Sanders, Abram; Veefkind, Pepijn

    2016-04-01

    The Sentinel-4 mission is a part of the European Commission's Copernicus programme, the goal of which is to provide geo-information to manage environmental assets, and to observe, understand and mitigate the effects of the changing climate. The Sentinel-4/UVN instrument design is motivated by the need to monitor trace gas concentrations and aerosols in the atmosphere from a geostationary orbit. The on-board instrument is a high resolution UV-VIS-NIR (UVN) spectrometer system that provides hourly radiance measurements over Europe and northern Africa with a spatial sampling of 8 km. The main application area of Sentinel-4/UVN is air quality. One of the data products that is being developed for Sentinel-4/UVN is the Aerosol Layer Height (ALH). The goal is to determine the height of aerosol plumes with a resolution of better than 0.5 - 1 km. The ALH product thus targets aerosol layers in the free troposphere, such as desert dust, volcanic ash and biomass during plumes. KNMI is assigned with the development of the Aerosol Layer Height (ALH) algorithm. Its heritage is the ALH algorithm developed by Sanders and De Haan (ATBD, 2016) for the TROPOMI instrument on board the Sentinel-5 Precursor mission that is to be launched in June or July 2016 (tentative date). The retrieval algorithm designed so far for the aerosol height product is based on the absorption characteristics of the oxygen-A band (759-770 nm). The algorithm has heritage to the ALH algorithm developed for TROPOMI on the Sentinel 5 precursor satellite. New aspects for Sentinel-4/UVN include the higher resolution (0.116 nm compared to 0.4 for TROPOMI) and hourly observation from the geostationary orbit. The algorithm uses optimal estimation to obtain a spectral fit of the reflectance across absorption band, while assuming a single uniform layer with fixed width to represent the aerosol vertical distribution. The state vector includes amongst other elements the height of this layer and its aerosol optical

  15. Phonological Development in Specific Contexts: Studies of Chinese-Speaking Children. Child Language and Development.

    ERIC Educational Resources Information Center

    Hua, Zhu

    This book examines the phonological development and impairment of Chinese-speaking children. It contains a series of studies of phonological acquisition and development of children in specific contexts (Putonghua or Modern Standard Chinese, the language variety promoted by the Chinese government, and normally developing children, children with…

  16. Development and Evaluation of Model Algorithms to Account for Chemical Transformation in the Nearroad Environment

    EPA Science Inventory

    We describe the development and evaluation of two new model algorithms for NOx chemistry in the R-LINE near-road dispersion model for traffic sources. With increased urbanization, there is increased mobility leading to higher amount of traffic related activity on a global scale. ...

  17. Development of sub-daily erosion and sediment transport algorithms in SWAT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    New Soil and Water Assessment Tool (SWAT) algorithms for simulation of stormwater best management practices (BMPs) such as detention basins, wet ponds, sedimentation filtration ponds, and retention irrigation systems are under development for modeling small/urban watersheds. Modeling stormwater BMPs...

  18. Selection and collection of multi parameter physiological data for cardiac rhythm diagnostic algorithm development

    NASA Astrophysics Data System (ADS)

    Bostock, J.; Weller, P.; Cooklin, M.

    2010-07-01

    Automated diagnostic algorithms are used in implantable cardioverter-defibrillators (ICD's) to detect abnormal heart rhythms. Algorithms misdiagnose and improved specificity is needed to prevent inappropriate therapy. Knowledge engineering (KE) and artificial intelligence (AI) could improve this. A pilot study of KE was performed with artificial neural network (ANN) as AI system. A case note review analysed arrhythmic events stored in patients ICD memory. 13.2% patients received inappropriate therapy. The best ICD algorithm had sensitivity 1.00, specificity 0.69 (p<0.001 different to gold standard). A subset of data was used to train and test an ANN. A feed-forward, back-propagation network with 7 inputs, a 4 node hidden layer and 1 output had sensitivity 1.00, specificity 0.71 (p<0.001). A prospective study was performed using KE to list arrhythmias, factors and indicators for which measurable parameters were evaluated and results reviewed by a domain expert. Waveforms from electrodes in the heart and thoracic bio-impedance; temperature and motion data were collected from 65 patients during cardiac electrophysiological studies. 5 incomplete datasets were due to technical failures. We concluded that KE successfully guided selection of parameters and ANN produced a usable system and that complex data collection carries greater risk of technical failure, leading to data loss.

  19. Characterizing the Preturbulence Environment for Sensor Development, New Hazard Algorithms and NASA Experimental Flight Planning

    NASA Technical Reports Server (NTRS)

    Kaplan, Michael L.; Lin, Yuh-Lang

    2004-01-01

    During the grant period, several tasks were performed in support of the NASA Turbulence Prediction and Warning Systems (TPAWS) program. The primary focus of the research was on characterizing the preturbulence environment by developing predictive tools and simulating atmospheric conditions that preceded severe turbulence. The goal of the research being to provide both dynamical understanding of conditions that preceded turbulence as well as providing predictive tools in support of operational NASA B-757 turbulence research flights. The advancements in characterizing the preturbulence environment will be applied by NASA to sensor development for predicting turbulence onboard commercial aircraft. Numerical simulations with atmospheric models as well as multi-scale observational analyses provided insights into the environment organizing turbulence in a total of forty-eight specific case studies of severe accident producing turbulence on commercial aircraft. These accidents exclusively affected commercial aircraft. A paradigm was developed which diagnosed specific atmospheric circulation systems from the synoptic scale down to the meso-y scale that preceded turbulence in both clear air and in proximity to convection. The emphasis was primarily on convective turbulence as that is what the TPAWS program is most focused on in terms of developing improved sensors for turbulence warning and avoidance. However, the dynamical paradigm also has applicability to clear air and mountain turbulence. This dynamical sequence of events was then employed to formulate and test new hazard prediction indices that were first tested in research simulation studies and then ultimately were further tested in support of the NASA B-757 turbulence research flights. The new hazard characterization algorithms were utilized in a Real Time Turbulence Model (RTTM) that was operationally employed to support the NASA B-757 turbulence research flights. Improvements in the RTTM were implemented in an

  20. Ocean Observations with EOS/MODIS: Algorithm Development and Post Launch Studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1997-01-01

    The following accomplishments were made during the present reporting period: (1) We expanded our new method, for identifying the presence of absorbing aerosols and simultaneously performing atmospheric correction, to the point where it could be added as a subroutine to the MODIS water-leaving radiance algorithm; (2) We successfully acquired micro pulse lidar (MPL) data at sea during a cruise in February; (3) We developed a water-leaving radiance algorithm module for an approximate correction of the MODIS instrument polarization sensitivity; and (4) We participated in one cruise to the Gulf of Maine, a well known region for mesoscale coccolithophore blooms. We measured coccolithophore abundance, production and optical properties.

  1. Ocean observations with EOS/MODIS: Algorithm Development and Post Launch Studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1998-01-01

    Significant accomplishments made during the present reporting period: (1) We expanded our "spectral-matching" algorithm (SMA), for identifying the presence of absorbing aerosols and simultaneously performing atmospheric correction and derivation of the ocean's bio-optical parameters, to the point where it could be added as a subroutine to the MODIS water-leaving radiance algorithm; (2) A modification to the SMA that does not require detailed aerosol models has been developed. This is important as the requirement for realistic aerosol models has been a weakness of the SMA; and (3) We successfully acquired micro pulse lidar data in a Saharan dust outbreak during ACE-2 in the Canary Islands.

  2. Development and benefit analysis of a sector design algorithm for terminal dynamic airspace configuration

    NASA Astrophysics Data System (ADS)

    Sciandra, Vincent

    The National Airspace System (NAS) is the vast network of systems enabling safe and efficient air travel in the United States. It consists of a set of static sectors, each controlled by one or more air traffic controllers. Air traffic control is tasked with ensuring that all flights can depart and arrive on time and in a safe and efficient matter. However, skyrocketing demand will only increase the stress on an already inefficient system, causing massive delays. The current, static configuration of the NAS cannot possibly handle the future demand on the system safely and efficiently, especially since it is projected to triple by 2025. To overcome these issues, the Next Generation of Air Transportation System (NextGen) is being enacted to increase the flexibility of the NAS. A major objective of NextGen is to implement Adaptable Dynamic Airspace Configuration (ADAC) which will dynamically allocate the sectors to best fit the traffic in the area. Dynamically allocating sectors will allow resources such as controllers to be better distributed to meet traffic demands. Currently, most DAC research has involved the en route airspace. This leaves the terminal airspace, which accounts for a large amount of the overall NAS complexity, in need of work. Using a combination of methods used in en route sectorization, this thesis has developed an algorithm for the dynamic allocation of sectors in the terminal airspace. This algorithm will be evaluated using metrics common in the evaluation of dynamic density, which is adapted for the unique challenges of the terminal airspace, and used to measure workload on air traffic controllers. These metrics give a better view of the controller workload than the number of aircraft alone. By comparing the test results with sectors currently used in the NAS using real traffic data, the algorithm xv generated sectors can be quantitatively evaluated for improvement of the current sectorizations. This will be accomplished by testing the

  3. Developing Korean-specific equations of stature estimation.

    PubMed

    Jeong, Yangseung; Jantz, Lee Meadows

    2016-03-01

    This study aims to develop Korean-specific equations for stature estimation and compare their performance to existing techniques. Due to a lack of appropriate reference samples in Korea, equations were generated using a hybrid method on 113 Korean unknown skeletons. In this approach, estimates using the anatomical method [1] were regarded as actual stature. Results revealed that new equations produced more accurate and precise estimates than previous techniques. In addition, due to consistent body proportions of Korean populations through time and space, new equations are applicable to Korean skeletons regardless of their temporal and geographic origins. For obtaining statures at death, particularly in a forensic context, an age correction factor, 0.0426 cm/year, should be applied.

  4. Development of a 2-D algorithm to simulate convection and phase transition efficiently

    NASA Astrophysics Data System (ADS)

    Evans, Katherine J.; Knoll, D. A.; Pernice, Michael

    2006-11-01

    We develop a Jacobian-Free Newton-Krylov (JFNK) method for the solution of a two-dimensional convection phase change model using the incompressible Navier-Stokes equation set and enthalpy as the energy conservation variable. The SIMPLE algorithm acts as a physics-based preconditioner to JFNK. This combined algorithm is compared to solutions using SIMPLE as the main solver. Algorithm performance is assessed for two benchmark problems of phase change convection of a pure material, one melting and one freezing. The JFNK-SIMPLE method is shown to be more efficient per time step and more robust at larger time steps. Overall CPU savings of more than an order of magnitude are realized.

  5. Development of the Landsat Data Continuity Mission Cloud Cover Assessment Algorithms

    USGS Publications Warehouse

    Scaramuzza, Pat; Bouchard, M.A.; Dwyer, J.L.

    2012-01-01

    The upcoming launch of the Operational Land Imager (OLI) will start the next era of the Landsat program. However, the Automated Cloud-Cover Assessment (CCA) (ACCA) algorithm used on Landsat 7 requires a thermal band and is thus not suited for OLI. There will be a thermal instrument on the Landsat Data Continuity Mission (LDCM)-the Thermal Infrared Sensor-which may not be available during all OLI collections. This illustrates a need for CCA for LDCM in the absence of thermal data. To research possibilities for full-resolution OLI cloud assessment, a global data set of 207 Landsat 7 scenes with manually generated cloud masks was created. It was used to evaluate the ACCA algorithm, showing that the algorithm correctly classified 79.9% of a standard test subset of 3.95 109 pixels. The data set was also used to develop and validate two successor algorithms for use with OLI data-one derived from an off-the-shelf machine learning package and one based on ACCA but enhanced by a simple neural network. These comprehensive CCA algorithms were shown to correctly classify pixels as cloudy or clear 88.5% and 89.7% of the time, respectively.

  6. Millimeter-Wave Imaging Radiometer (MIR) Data Processing and Development of Water Vapor Retrieval Algorithms

    NASA Technical Reports Server (NTRS)

    Chang, L. Aron

    1998-01-01

    This document describes the final report of the Millimeter-wave Imaging Radiometer (MIR) Data Processing and Development of Water Vapor Retrieval Algorithms. Volumes of radiometric data have been collected using airborne MIR measurements during a series of field experiments since May 1992. Calibrated brightness temperature data in MIR channels are now available for studies of various hydrological parameters of the atmosphere and Earth's surface. Water vapor retrieval algorithms using multichannel MIR data input are developed for the profiling of atmospheric humidity. The retrieval algorithms are also extended to do three-dimensional mapping of moisture field using continuous observation provided by airborne sensor MIR or spaceborne sensor SSM/T-2. Validation studies for water vapor retrieval are carried out through the intercomparison of collocated and concurrent measurements using different instruments including lidars and radiosondes. The developed MIR water vapor retrieval algorithm is capable of humidity profiling under meteorological conditions ranging from clear column to moderately cloudy sky. Simulative water vapor retrieval studies using extended microwave channels near 183 and 557 GHz strong absorption lines indicate feasibility of humidity profiling to layers in the upper troposphere and improve the overall vertical resolution through the atmosphere.

  7. SPHERES as Formation Flight Algorithm Development and Validation Testbed: Current Progress and Beyond

    NASA Technical Reports Server (NTRS)

    Kong, Edmund M.; Saenz-Otero, Alvar; Nolet, Simon; Berkovitz, Dustin S.; Miller, David W.; Sell, Steve W.

    2004-01-01

    The MIT-SSL SPHERES testbed provides a facility for the development of algorithms necessary for the success of Distributed Satellite Systems (DSS). The initial development contemplated formation flight and docking control algorithms; SPHERES now supports the study of metrology, control, autonomy, artificial intelligence, and communications algorithms and their effects on DSS projects. To support this wide range of topics, the SPHERES design contemplated the need to support multiple researchers, as echoed from both the hardware and software designs. The SPHERES operational plan further facilitates the development of algorithms by multiple researchers, while the operational locations incrementally increase the ability of the tests to operate in a representative environment. In this paper, an overview of the SPHERES testbed is first presented. The SPHERES testbed serves as a model of the design philosophies that allow for the various researches being carried out on such a facility. The implementation of these philosophies are further highlighted in the three different programs that are currently scheduled for testing onboard the International Space Station (ISS) and three that are proposed for a re-flight mission: Mass Property Identification, Autonomous Rendezvous and Docking, TPF Multiple Spacecraft Formation Flight in the first flight and Precision Optical Pointing, Tethered Formation Flight and Mars Orbit Sample Retrieval for the re-flight mission.

  8. An Improved Greedy Search Algorithm for the Development of a Phonetically Rich Speech Corpus

    NASA Astrophysics Data System (ADS)

    Zhang, Jin-Song; Nakamura, Satoshi

    An efficient way to develop large scale speech corpora is to collect phonetically rich ones that have high coverage of phonetic contextual units. The sentence set, usually called as the minimum set, should have small text size in order to reduce the collection cost. It can be selected by a greedy search algorithm from a large mother text corpus. With the inclusion of more and more phonetic contextual effects, the number of different phonetic contextual units increased dramatically, making the search not a trivial issue. In order to improve the search efficiency, we previously proposed a so-called least-to-most-ordered greedy search based on the conventional algorithms. This paper evaluated these algorithms in order to show their different characteristics. The experimental results showed that the least-to-most-ordered methods successfully achieved smaller objective sets at significantly less computation time, when compared with the conventional ones. This algorithm has already been applied to the development a number of speech corpora, including a large scale phonetically rich Chinese speech corpus ATRPTH which played an important role in developing our multi-language translation system.

  9. Gene expression changes during retinal development and rod specification

    PubMed Central

    Carrigan, Matthew; Hokamp, Karsten; Farrar, G. Jane

    2015-01-01

    Purpose Retinitis pigmentosa (RP) typically results from individual mutations in any one of >70 genes that cause rod photoreceptor cells to degenerate prematurely, eventually resulting in blindness. Gene therapies targeting individual RP genes have shown efficacy at clinical trial; however, these therapies require the surviving photoreceptor cells to be viable and functional, and may be economically feasible for only the more commonly mutated genes. An alternative potential treatment strategy, particularly for late stage disease, may involve stem cell transplants into the photoreceptor layer of the retina. Rod progenitors from postnatal mouse retinas can be transplanted and can form photoreceptors in recipient adult retinas; optimal numbers of transplantable cells are obtained from postnatal day 3–5 (P3–5) retinas. These cells can also be expanded in culture; however, this results in the loss of photoreceptor potential. Gene expression differences between postnatal retinas, cultured retinal progenitor cells (RPCs), and rod photoreceptor precursors were investigated to identify gene expression patterns involved in the specification of rod photoreceptors. Methods Microarrays were used to investigate differences in gene expression between cultured RPCs that have lost photoreceptor potential, P1 retinas, and fresh P5 retinas that contain significant numbers of transplantable photoreceptors. Additionally, fluorescence-activated cell sorting (FACS) sorted Rho-eGFP-expressing rod photoreceptor precursors were compared with Rho-eGFP-negative cells from the same P5 retinas. Differential expression was confirmed with quantitative polymerase chain reaction (q-PCR). Results Analysis of the microarray data sets, including the use of t-distributed stochastic neighbor embedding (t-SNE) to identify expression pattern neighbors of key photoreceptor specific genes, resulted in the identification of 636 genes differentially regulated during rod specification. Forty-four of these

  10. Integrated Graphics Operations and Analysis Lab Development of Advanced Computer Graphics Algorithms

    NASA Technical Reports Server (NTRS)

    Wheaton, Ira M.

    2011-01-01

    The focus of this project is to aid the IGOAL in researching and implementing algorithms for advanced computer graphics. First, this project focused on porting the current International Space Station (ISS) Xbox experience to the web. Previously, the ISS interior fly-around education and outreach experience only ran on an Xbox 360. One of the desires was to take this experience and make it into something that can be put on NASA s educational site for anyone to be able to access. The current code works in the Unity game engine which does have cross platform capability but is not 100% compatible. The tasks for an intern to complete this portion consisted of gaining familiarity with Unity and the current ISS Xbox code, porting the Xbox code to the web as is, and modifying the code to work well as a web application. In addition, a procedurally generated cloud algorithm will be developed. Currently, the clouds used in AGEA animations and the Xbox experiences are a texture map. The desire is to create a procedurally generated cloud algorithm to provide dynamically generated clouds for both AGEA animations and the Xbox experiences. This task consists of gaining familiarity with AGEA and the plug-in interface, developing the algorithm, creating an AGEA plug-in to implement the algorithm inside AGEA, and creating a Unity script to implement the algorithm for the Xbox. This portion of the project was unable to be completed in the time frame of the internship; however, the IGOAL will continue to work on it in the future.

  11. Development of an algorithm to measure defect geometry using a 3D laser scanner

    NASA Astrophysics Data System (ADS)

    Kilambi, S.; Tipton, S. M.

    2012-08-01

    Current fatigue life prediction models for coiled tubing (CT) require accurate measurements of the defect geometry. Three-dimensional (3D) laser imaging has shown promise toward becoming a nondestructive, non-contacting method of surface defect characterization. Laser imaging provides a detailed photographic image of a flaw, in addition to a detailed 3D surface map from which its critical dimensions can be measured. This paper describes algorithms to determine defect characteristics, specifically depth, width, length and projected cross-sectional area. Curve-fitting methods were compared and implicit algebraic fits have higher probability of convergence compared to explicit geometric fits. Among the algebraic fits, the Taubin circle fit has the least error. The algorithm was able to extract the dimensions of the flaw geometry from the scanned data of CT to within a tolerance of about 0.127 mm, close to the tolerance specified for the laser scanner itself, compared to measurements made using traveling microscopes. The algorithm computes the projected surface area of the flaw, which could previously only be estimated from the dimension measurements and the assumptions made about cutter shape. Although shadows compromised the accuracy of the shape characterization, especially for deep and narrow flaws, the results indicate that the algorithm with laser scanner can be used for non-destructive evaluation of CT in the oil field industry. Further work is needed to improve accuracy, to eliminate shadow effects and to reduce radial deviation.

  12. Femtosecond free-electron laser x-ray diffraction data sets for algorithm development.

    PubMed

    Kassemeyer, Stephan; Steinbrener, Jan; Lomb, Lukas; Hartmann, Elisabeth; Aquila, Andrew; Barty, Anton; Martin, Andrew V; Hampton, Christina Y; Bajt, Saša; Barthelmess, Miriam; Barends, Thomas R M; Bostedt, Christoph; Bott, Mario; Bozek, John D; Coppola, Nicola; Cryle, Max; DePonte, Daniel P; Doak, R Bruce; Epp, Sascha W; Erk, Benjamin; Fleckenstein, Holger; Foucar, Lutz; Graafsma, Heinz; Gumprecht, Lars; Hartmann, Andreas; Hartmann, Robert; Hauser, Günter; Hirsemann, Helmut; Hömke, André; Holl, Peter; Jönsson, Olof; Kimmel, Nils; Krasniqi, Faton; Liang, Mengning; Maia, Filipe R N C; Marchesini, Stefano; Nass, Karol; Reich, Christian; Rolles, Daniel; Rudek, Benedikt; Rudenko, Artem; Schmidt, Carlo; Schulz, Joachim; Shoeman, Robert L; Sierra, Raymond G; Soltau, Heike; Spence, John C H; Starodub, Dmitri; Stellato, Francesco; Stern, Stephan; Stier, Gunter; Svenda, Martin; Weidenspointner, Georg; Weierstall, Uwe; White, Thomas A; Wunderer, Cornelia; Frank, Matthias; Chapman, Henry N; Ullrich, Joachim; Strüder, Lothar; Bogan, Michael J; Schlichting, Ilme

    2012-02-13

    We describe femtosecond X-ray diffraction data sets of viruses and nanoparticles collected at the Linac Coherent Light Source. The data establish the first large benchmark data sets for coherent diffraction methods freely available to the public, to bolster the development of algorithms that are essential for developing this novel approach as a useful imaging technique. Applications are 2D reconstructions, orientation classification and finally 3D imaging by assembling 2D patterns into a 3D diffraction volume.

  13. Femtosecond free-electron laser x-ray diffraction data sets for algorithm development.

    PubMed

    Kassemeyer, Stephan; Steinbrener, Jan; Lomb, Lukas; Hartmann, Elisabeth; Aquila, Andrew; Barty, Anton; Martin, Andrew V; Hampton, Christina Y; Bajt, Saša; Barthelmess, Miriam; Barends, Thomas R M; Bostedt, Christoph; Bott, Mario; Bozek, John D; Coppola, Nicola; Cryle, Max; DePonte, Daniel P; Doak, R Bruce; Epp, Sascha W; Erk, Benjamin; Fleckenstein, Holger; Foucar, Lutz; Graafsma, Heinz; Gumprecht, Lars; Hartmann, Andreas; Hartmann, Robert; Hauser, Günter; Hirsemann, Helmut; Hömke, André; Holl, Peter; Jönsson, Olof; Kimmel, Nils; Krasniqi, Faton; Liang, Mengning; Maia, Filipe R N C; Marchesini, Stefano; Nass, Karol; Reich, Christian; Rolles, Daniel; Rudek, Benedikt; Rudenko, Artem; Schmidt, Carlo; Schulz, Joachim; Shoeman, Robert L; Sierra, Raymond G; Soltau, Heike; Spence, John C H; Starodub, Dmitri; Stellato, Francesco; Stern, Stephan; Stier, Gunter; Svenda, Martin; Weidenspointner, Georg; Weierstall, Uwe; White, Thomas A; Wunderer, Cornelia; Frank, Matthias; Chapman, Henry N; Ullrich, Joachim; Strüder, Lothar; Bogan, Michael J; Schlichting, Ilme

    2012-02-13

    We describe femtosecond X-ray diffraction data sets of viruses and nanoparticles collected at the Linac Coherent Light Source. The data establish the first large benchmark data sets for coherent diffraction methods freely available to the public, to bolster the development of algorithms that are essential for developing this novel approach as a useful imaging technique. Applications are 2D reconstructions, orientation classification and finally 3D imaging by assembling 2D patterns into a 3D diffraction volume. PMID:22418172

  14. FORTRAN Algorithm for Image Processing

    NASA Technical Reports Server (NTRS)

    Roth, Don J.; Hull, David R.

    1987-01-01

    FORTRAN computer algorithm containing various image-processing analysis and enhancement functions developed. Algorithm developed specifically to process images of developmental heat-engine materials obtained with sophisticated nondestructive evaluation instruments. Applications of program include scientific, industrial, and biomedical imaging for studies of flaws in materials, analyses of steel and ores, and pathology.

  15. Services for domain specific developments in the Cloud

    NASA Astrophysics Data System (ADS)

    Schwichtenberg, Horst; Gemuend, André

    2015-04-01

    We will discuss and demonstrate the possibilities of new Cloud Services where the complete development of code is in the Cloud. We will discuss the possibilities of such services where the complete development cycle from programing to testing is in the cloud. This can be also combined with dedicated research domain specific services and hide the burden of accessing available infrastructures. As an example, we will show a service that is intended to complement the services of the VERCE projects infrastructure, a service that utilizes Cloud resources to offer simplified execution of data pre- and post-processing scripts. It offers users access to the ObsPy seismological toolbox for processing data with the Python programming language, executed on virtual Cloud resources in a secured sandbox. The solution encompasses a frontend with a modern graphical user interface, a messaging infrastructure as well as Python worker nodes for background processing. All components are deployable in the Cloud and have been tested on different environments based on OpenStack and OpenNebula. Deployments on commercial, public Clouds will be tested in the future.

  16. Improving antibody binding affinity and specificity for therapeutic development.

    PubMed

    Bostrom, Jenny; Lee, Chingwei V; Haber, Lauric; Fuh, Germaine

    2009-01-01

    Affinity maturation is an important part of the therapeutic antibody development process as in vivo activity often requires high binding affinity. Here, we describe a targeted approach for affinity improvement of therapeutic antibodies. Sets of CDR residues that are solvent accessible and relatively diverse in natural antibodies are targeted for diversification. Degenerate oligonucleotides are used to generate combinatorial phage-displayed antibody libraries with varying degree of diversity at randomized positions from which high-affinity antibodies can be selected. An advantage of using antibodies for therapy is their exquisite target specificity, which enables selective antigen binding and reduces off-target effects. However, it can be useful, and often it is necessary, to generate cross-reactive antibodies binding to not only the human antigen but also the corresponding non-human primate or rodent orthologs. Such cross-reactive antibodies can be used to validate the therapeutic targeting and examine the safety profile in preclinical animal models before committing to a costly development track. We show how affinity improvement and cross-species binding can be achieved in a one-step process.

  17. Advances in the development of SUMO specific protease (SENP) inhibitors

    PubMed Central

    Kumar, Ashutosh; Zhang, Kam Y.J.

    2015-01-01

    Sumoylation is a reversible post-translational modification that involves the covalent attachment of small ubiquitin-like modifier (SUMO) proteins to their substrate proteins. Prior to their conjugation, SUMO proteins need to be proteolytically processed from its precursor form to mature or active form. SUMO specific proteases (SENPs) are cysteine proteases that cleave the pro or inactive form of SUMO at C-terminus using its hydrolase activity to expose two glycine residues. SENPs also catalyze the de-conjugation of SUMO proteins using their isopeptidase activity, which is crucial for recycling of SUMO from substrate proteins. SENPs are important for maintaining the balance between sumoylated and unsumoylated proteins required for normal cellular physiology. Several studies reported the overexpression of SENPs in disease conditions and highlighted their role in the development of various diseases, especially cancer. In this review, we will address the current biological understanding of various SENP isoforms and their role in the pathogenesis of different cancers and other diseases. We will then discuss the advances in the development of protein-based, peptidyl and small molecule inhibitors of various SENP isoforms. Finally, we will summarize successful examples of computational screening that allowed the identification of SENP inhibitors with therapeutic potential. PMID:25893082

  18. Development of a Specific Finite Element for Timber Joint Modeling

    NASA Astrophysics Data System (ADS)

    Descamps, Thierry; Van Parys, Laurent; Datoussaïd, Sélim

    2011-01-01

    Widely used for light frame structures or for heavy laminated wood structures, dowel-type fasteners are the most commonly used kind of connectors in timber construction. The purpose of this work is to develop a tool for the semi-rigid analysis and design of such joints. Firstly, interests and approaches described in literature for the semi-rigid modeling of timber plane frames are summarized. Secondly, for a better understanding of the problem, the main characteristics of wood used as a structural material are presented. Finally, a method for an efficient study of joints built with dowel-type fasteners is proposed and developed. This method consists of the introduction of a specific finite element called "Finite Semi-Rigid Element (FSRE)" between the ends of the jointed members. This joint element consists of two nodes, each with three degrees of freedom. These nodes will be tied with common beamelements during the FE analysis. The stiffness of the FSRE is computed from the geometry of the joints and embedding stiffness of all fasteners, along and perpendicular to the grain. The embedding characteristics of fasteners are defined with help of their experimental load-slip curves (fitted with Foschi's models) leading finally to the resolution of a FE non-linear problem.

  19. Development of the concept of immunologic specificity: IV.

    PubMed

    Silverstein, A M

    1983-09-01

    We have attempted, in this series of essays on the development of the concept of immunologic specificity, to trace the history of one of the most central ideas in immunology (and indeed in biology in general). The result must be viewed as preliminary and incomplete and as an invitation to others to add, to amend, and even to disprove. Nevertheless, several interesting conclusions may be drawn, which reveal much about the workings of immunology in particular, and perhaps science in general. First, the roots of any important scientific concept (such as that of immunologic specificity) do not grow in isolation; they draw nourishment from many other disciplines. Similarly, the growth of an important concept within a given discipline will have far-reaching implications and fruits for other fields of science. Second, we may note a marked change in the manner in which immunology is currently practiced, compared with that of the end of the last century. The quantum leaps forward in funding, in numbers of scientists, and in masses of crucial data have not been without a certain cost--the substantial reduction in elegant personal style that characterized so many of our scientific forebears, and that makes so pleasant the reading of their reports. Finally, we see again and again how much his philosophical bases and disciplinary upbringing determine a scientist's approach, the questions that he asks, and the type of answers he will accept. Throughout much of immunology's history, as Jerne put it so well (44), cis- and trans-immunologists hardly spoke to one another. Or rather, a cis-immunologist sometimes spoke to a trans-immunologist, but the latter rarely answered! Fortunately, one of the attributes of scientific progress is a merging of these disparate languages, and eventual mutual comprehension.

  20. Review and Analysis of Algorithmic Approaches Developed for Prognostics on CMAPSS Dataset

    NASA Technical Reports Server (NTRS)

    Ramasso, Emannuel; Saxena, Abhinav

    2014-01-01

    Benchmarking of prognostic algorithms has been challenging due to limited availability of common datasets suitable for prognostics. In an attempt to alleviate this problem several benchmarking datasets have been collected by NASA's prognostic center of excellence and made available to the Prognostics and Health Management (PHM) community to allow evaluation and comparison of prognostics algorithms. Among those datasets are five C-MAPSS datasets that have been extremely popular due to their unique characteristics making them suitable for prognostics. The C-MAPSS datasets pose several challenges that have been tackled by different methods in the PHM literature. In particular, management of high variability due to sensor noise, effects of operating conditions, and presence of multiple simultaneous fault modes are some factors that have great impact on the generalization capabilities of prognostics algorithms. More than 70 publications have used the C-MAPSS datasets for developing data-driven prognostic algorithms. The C-MAPSS datasets are also shown to be well-suited for development of new machine learning and pattern recognition tools for several key preprocessing steps such as feature extraction and selection, failure mode assessment, operating conditions assessment, health status estimation, uncertainty management, and prognostics performance evaluation. This paper summarizes a comprehensive literature review of publications using C-MAPSS datasets and provides guidelines and references to further usage of these datasets in a manner that allows clear and consistent comparison between different approaches.

  1. DEVELOPMENT OF PROCESSING ALGORITHMS FOR OUTLIERS AND MISSING VALUES IN CONSTANT OBSERVATION DATA OF TRAFFIC VOLUMES

    NASA Astrophysics Data System (ADS)

    Hashimoto, Hiroyoshi; Kawano, Tomohiko; Momma, Toshiyuki; Uesaka, Katsumi

    Ministry of Land, Infrastructure, Transport and Tourism of Japan is going to make maximum use of vehicle detectors installed at national roads around the country and efficiently gather traffic volume data from wide areas by estimating traffic volumes within adjacent road sections based on the constant observation data obtained from the vehicle detectors. Efficient processing of outliers and missing values in constant observation data are needed in this process. Focusing on the processing of singular and missing values, the authors have developed a series of algorithms to calculate hourly traffic volumes in which a required accuracy is secured based on measurement data obtained from vehicle detectors. The algorithms have been put to practical uses. The main characteristic of these algorithms is that they use data accumulated in the past as well as data from constant observation devices in adjacent road sections. This paper describes the contents of the developed algorithms and clarifies their accuracy using actual observation data and by making comparis on with other methods.

  2. jClustering, an Open Framework for the Development of 4D Clustering Algorithms

    PubMed Central

    Mateos-Pérez, José María; García-Villalba, Carmen; Pascau, Javier; Desco, Manuel; Vaquero, Juan J.

    2013-01-01

    We present jClustering, an open framework for the design of clustering algorithms in dynamic medical imaging. We developed this tool because of the difficulty involved in manually segmenting dynamic PET images and the lack of availability of source code for published segmentation algorithms. Providing an easily extensible open tool encourages publication of source code to facilitate the process of comparing algorithms and provide interested third parties with the opportunity to review code. The internal structure of the framework allows an external developer to implement new algorithms easily and quickly, focusing only on the particulars of the method being implemented and not on image data handling and preprocessing. This tool has been coded in Java and is presented as an ImageJ plugin in order to take advantage of all the functionalities offered by this imaging analysis platform. Both binary packages and source code have been published, the latter under a free software license (GNU General Public License) to allow modification if necessary. PMID:23990913

  3. Space-based Doppler lidar sampling strategies: Algorithm development and simulated observation experiments

    NASA Technical Reports Server (NTRS)

    Emmitt, G. D.; Wood, S. A.; Morris, M.

    1990-01-01

    Lidar Atmospheric Wind Sounder (LAWS) Simulation Models (LSM) were developed to evaluate the potential impact of global wind observations on the basic understanding of the Earth's atmosphere and on the predictive skills of current forecast models (GCM and regional scale). Fully integrated top to bottom LAWS Simulation Models for global and regional scale simulations were developed. The algorithm development incorporated the effects of aerosols, water vapor, clouds, terrain, and atmospheric turbulence into the models. Other additions include a new satellite orbiter, signal processor, line of sight uncertainty model, new Multi-Paired Algorithm and wind error analysis code. An atmospheric wind field library containing control fields, meteorological fields, phenomena fields, and new European Center for Medium Range Weather Forecasting (ECMWF) data was also added. The LSM was used to address some key LAWS issues and trades such as accuracy and interpretation of LAWS information, data density, signal strength, cloud obscuration, and temporal data resolution.

  4. GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

    PubMed Central

    Schmidt, Brian J.; Ebrahim, Ali; Metz, Thomas O.; Adkins, Joshua N.; Palsson, Bernhard Ø.; Hyduke, Daniel R.

    2013-01-01

    Motivation: Genome-scale metabolic models have been used extensively to investigate alterations in cellular metabolism. The accuracy of these models to represent cellular metabolism in specific conditions has been improved by constraining the model with omics data sources. However, few practical methods for integrating metabolomics data with other omics data sources into genome-scale models of metabolism have been developed. Results: GIM3E (Gene Inactivation Moderated by Metabolism, Metabolomics and Expression) is an algorithm that enables the development of condition-specific models based on an objective function, transcriptomics and cellular metabolomics data. GIM3E establishes metabolite use requirements with metabolomics data, uses model-paired transcriptomics data to find experimentally supported solutions and provides calculations of the turnover (production/consumption) flux of metabolites. GIM3E was used to investigate the effects of integrating additional omics datasets to create increasingly constrained solution spaces of Salmonella Typhimurium metabolism during growth in both rich and virulence media. This integration proved to be informative and resulted in a requirement of additional active reactions (12 in each case) or metabolites (26 or 29, respectively). The addition of constraints from transcriptomics also impacted the allowed solution space, and the cellular metabolites with turnover fluxes that were necessarily altered by the change in conditions increased from 118 to 271 of 1397. Availability: GIM3E has been implemented in Python and requires a COBRApy 0.2.x. The algorithm and sample data described here are freely available at: http://opencobra.sourceforge.net/ Contacts: brianjamesschmidt@gmail.com or hyduke@usu.edu Supplementary information: Supplementary information is available at Bioinformatics online. PMID:23975765

  5. Data and software tools for gamma radiation spectral threat detection and nuclide identification algorithm development and evaluation

    NASA Astrophysics Data System (ADS)

    Portnoy, David; Fisher, Brian; Phifer, Daniel

    2015-06-01

    The detection of radiological and nuclear threats is extremely important to national security. The federal government is spending significant resources developing new detection systems and attempting to increase the performance of existing ones. The detection of illicit radionuclides that may pose a radiological or nuclear threat is a challenging problem complicated by benign radiation sources (e.g., cat litter and medical treatments), shielding, and large variations in background radiation. Although there is a growing acceptance within the community that concentrating efforts on algorithm development (independent of the specifics of fully assembled systems) has the potential for significant overall system performance gains, there are two major hindrances to advancements in gamma spectral analysis algorithms under the current paradigm: access to data and common performance metrics along with baseline performance measures. Because many of the signatures collected during performance measurement campaigns are classified, dissemination to algorithm developers is extremely limited. This leaves developers no choice but to collect their own data if they are lucky enough to have access to material and sensors. This is often combined with their own definition of metrics for measuring performance. These two conditions make it all but impossible for developers and external reviewers to make meaningful comparisons between algorithms. Without meaningful comparisons, performance advancements become very hard to achieve and (more importantly) recognize. The objective of this work is to overcome these obstacles by developing and freely distributing real and synthetically generated gamma-spectra data sets as well as software tools for performance evaluation with associated performance baselines to national labs, academic institutions, government agencies, and industry. At present, datasets for two tracks, or application domains, have been developed: one that includes temporal

  6. Computational Detection of Stage-Specific Transcription Factor Clusters during Heart Development

    PubMed Central

    Zeidler, Sebastian; Meckbach, Cornelia; Tacke, Rebecca; Raad, Farah S.; Roa, Angelica; Uchida, Shizuka; Zimmermann, Wolfram-Hubertus; Wingender, Edgar; Gültas, Mehmet

    2016-01-01

    Transcription factors (TFs) regulate gene expression in living organisms. In higher organisms, TFs often interact in non-random combinations with each other to control gene transcription. Understanding the interactions is key to decipher mechanisms underlying tissue development. The aim of this study was to analyze co-occurring transcription factor binding sites (TFBSs) in a time series dataset from a new cell-culture model of human heart muscle development in order to identify common as well as specific co-occurring TFBS pairs in the promoter regions of regulated genes which can be essential to enhance cardiac tissue developmental processes. To this end, we separated available RNAseq dataset into five temporally defined groups: (i) mesoderm induction stage; (ii) early cardiac specification stage; (iii) late cardiac specification stage; (iv) early cardiac maturation stage; (v) late cardiac maturation stage, where each of these stages is characterized by unique differentially expressed genes (DEGs). To identify TFBS pairs for each stage, we applied the MatrixCatch algorithm, which is a successful method to deduce experimentally described TFBS pairs in the promoters of the DEGs. Although DEGs in each stage are distinct, our results show that the TFBS pair networks predicted by MatrixCatch for all stages are quite similar. Thus, we extend the results of MatrixCatch utilizing a Markov clustering algorithm (MCL) to perform network analysis. Using our extended approach, we are able to separate the TFBS pair networks in several clusters to highlight stage-specific co-occurences between TFBSs. Our approach has revealed clusters that are either common (NFAT or HMGIY clusters) or specific (SMAD or AP-1 clusters) for the individual stages. Several of these clusters are likely to play an important role during the cardiomyogenesis. Further, we have shown that the related TFs of TFBSs in the clusters indicate potential synergistic or antagonistic interactions to switch between

  7. The cell biology of synaptic specificity during development

    PubMed Central

    Christensen, Ryan; Shao, Zhiyong; Colón-Ramos, Daniel A

    2013-01-01

    Proper circuit connectivity is critical for nervous system function. Connectivity derives from the interaction of two interdependent modules: synaptic specificity and synaptic assembly. Specificity involves both targeting of neurons to specific laminar regions and the formation of synapses onto defined subcellular areas. In this review, we focus discussion on recently elucidated molecular mechanisms that control synaptic specificity and link them to synapse assembly. We use these molecular pathways to underscore fundamental cell biological concepts that underpin, and help explain, the rules governing synaptic specificity. PMID:23932598

  8. Development of site-specific water quality criteria for copper

    SciTech Connect

    Giere, M.A.; McIntyre, D.O.; DeGraeve, G.M.

    1995-12-31

    Under its current operating system, the final effluent from a copper mining facility consistently meets its effluent limitation for copper. A change in mining practices to solution mining will result in a decrease in the hardness of the final effluent. The reduced hardness of the effluent will lower the effluent limit for copper to a concentration which cannot be achieved. The water-effect ratio (WER) procedure was selected to develop a site-specific criterion continuous concentration for copper for the effluent and it`s receiving stream. WER procedures followed those described in EPA`s ``Interim Guidance on Determination and Use of Water-Effect Ratios for Metals`` (1994). Three WER determinations were made using simulated downstream water as the site water. 48-hour acute Ceriodaphnia dubia and 96-hour acute fathead minnow toxicity tests were selected as the primary and secondary tests, respectively for use in the WER determinations. The results of the three WER determinations will be presented, as will the process used for predicting future effluent quality and permit compliance.

  9. Development of Outlier detection Algorithm Applicable to a Korean Surge-Gauge

    NASA Astrophysics Data System (ADS)

    Lee, Jun-Whan; Park, Sun-Cheon; Lee, Won-Jin; Lee, Duk Kee

    2016-04-01

    The Korea Meteorological Administration (KMA) is operating a surge-gauge (aerial ultrasonic type) at Ulleung-do to monitor tsunamis. And the National Institute of Meteorological Sciences (NIMS), KMA is developing a tsunami detection and observation system using this surge-gauge. Outliers resulting from a problem with the transmission and extreme events, which change the water level temporarily, are one of the most common discouraging problems in tsunami detection. Unlike a spike, multipoint outliers are difficult to detect clearly. Most of the previous studies used statistic values or signal processing methods such as wavelet transform and filter to detect the multipoint outliers, and used a continuous dataset. However, as the focus moved to a near real-time operation with a dataset that contains gaps, these methods are no longer tenable. In this study, we developed an outlier detection algorithm applicable to the Ulleung-do surge gauge where both multipoint outliers and missing data exist. Although only 9-point data and two arithmetic operations (plus and minus) are used, because of the newly developed keeping method, the algorithm is not only simple and fast but also effective in a non-continuous dataset. We calibrated 17 thresholds and conducted performance tests using the three month data from the Ulleung-do surge gauge. The results show that the newly developed despiking algorithm performs reliably in alleviating the outlier detecting problem.

  10. Development of the ITER magnetic diagnostic set and specification.

    PubMed

    Vayakis, G; Arshad, S; Delhom, D; Encheva, A; Giacomin, T; Jones, L; Patel, K M; Pérez-Lasala, M; Portales, M; Prieto, D; Sartori, F; Simrock, S; Snipes, J A; Udintsev, V S; Watts, C; Winter, A; Zabeo, L

    2012-10-01

    ITER magnetic diagnostics are now in their detailed design and R&D phase. They have passed their conceptual design reviews and a working diagnostic specification has been prepared aimed at the ITER project requirements. This paper highlights specific design progress, in particular, for the in-vessel coils, steady state sensors, saddle loops and divertor sensors. Key changes in the measurement specifications, and a working concept of software and electronics are also outlined.

  11. Sensitivity of cloud retrieval statistics to algorithm choices: Lessons learned from MODIS product development

    NASA Astrophysics Data System (ADS)

    Platnick, Steven; Ackerman, Steven; King, Michael; Zhang, Zhibo; Wind, Galina

    2013-04-01

    Cloud detection algorithms search for measurement signatures that differentiate a cloud-contaminated or "not-clear" pixel from the clear-sky background. These signatures can be spectral, textural or temporal in nature. The magnitude of the difference between the cloud and the background must exceed a threshold value for the pixel to be classified having a not-clear FOV. All detection algorithms employ multiple tests ranging across some portion of the solar reflectance and/or infrared spectrum. However, a cloud is not a single, uniform object, but rather has a distribution of optical thickness and morphology. As a result, problems can arise when the distributions of cloud and clear-sky background characteristics overlap, making some test results indeterminate and/or leading to some amount of detection misclassification. Further, imager cloud retrieval statistics are highly sensitive to how a pixel identified as not-clear by a cloud mask is determined to be useful for cloud-top and optical retrievals based on 1-D radiative models. This presentation provides an overview of the different 'choices' algorithm developers make in cloud detection algorithms and the impact on regional and global cloud amounts and fractional coverage, cloud type and property distributions. Lessons learned over the course of the MODIS cloud product development history are discussed. As an example, we will focus on the 1km MODIS Collection 5 cloud optical retrieval algorithm (product MOD06/MYD06 for Terra and Aqua, respectively) which removed pixels associated with cloud edges as defined by immediate adjacency to clear FOV MODIS cloud mask (MOD35/MYD35) pixels as well as ocean pixels with partly cloudy elements in the 250m MODIS cloud mask - part of the so-called Clear Sky Restoral algorithm. The Collection 6 algorithm attempts retrievals for these two types of partly cloudy pixel populations, but allows a user to isolate or filter out the populations. Retrieval sensitivities for these

  12. MEMS-based sensing and algorithm development for fall detection and gait analysis

    NASA Astrophysics Data System (ADS)

    Gupta, Piyush; Ramirez, Gabriel; Lie, Donald Y. C.; Dallas, Tim; Banister, Ron E.; Dentino, Andrew

    2010-02-01

    Falls by the elderly are highly detrimental to health, frequently resulting in injury, high medical costs, and even death. Using a MEMS-based sensing system, algorithms are being developed for detecting falls and monitoring the gait of elderly and disabled persons. In this study, wireless sensors utilize Zigbee protocols were incorporated into planar shoe insoles and a waist mounted device. The insole contains four sensors to measure pressure applied by the foot. A MEMS based tri-axial accelerometer is embedded in the insert and a second one is utilized by the waist mounted device. The primary fall detection algorithm is derived from the waist accelerometer. The differential acceleration is calculated from samples received in 1.5s time intervals. This differential acceleration provides the quantification via an energy index. From this index one may ascertain different gait and identify fall events. Once a pre-determined index threshold is exceeded, the algorithm will classify an event as a fall or a stumble. The secondary algorithm is derived from frequency analysis techniques. The analysis consists of wavelet transforms conducted on the waist accelerometer data. The insole pressure data is then used to underline discrepancies in the transforms, providing more accurate data for classifying gait and/or detecting falls. The range of the transform amplitude in the fourth iteration of a Daubechies-6 transform was found sufficient to detect and classify fall events.

  13. A Focus Group on Dental Pain Complaints with General Medical Practitioners: Developing a Treatment Algorithm.

    PubMed

    Carter, Ava Elizabeth; Carter, Geoff; Abbey, Robyn

    2016-01-01

    Objective. The differential diagnosis of pain in the mouth can be challenging for general medical practitioners (GMPs) as many different dental problems can present with similar signs and symptoms. This study aimed to create a treatment algorithm for GMPs to effectively and appropriately refer the patients and prescribe antibiotics. Design. The study design is comprised of qualitative focus group discussions. Setting and Subjects. Groups of GMPs within the Gold Coast and Brisbane urban and city regions. Outcome Measures. Content thematically analysed and treatment algorithm developed. Results. There were 5 focus groups with 8-9 participants per group. Addressing whether antibiotics should be given to patients with dental pain was considered very important to GMPs to prevent overtreatment and creating antibiotic resistance. Many practitioners were unsure of what the different forms of dental pains represent. 90% of the practitioners involved agreed that the treatment algorithm was useful to daily practice. Conclusion. Common dental complaints and infections are seldom surgical emergencies but can result in prolonged appointments for those GMPs who do not regularly deal with these issues. The treatment algorithm for referral processes and prescriptions was deemed easily downloadable and simple to interpret and detailed but succinct enough for clinical use by GMPs. PMID:27462469

  14. Dataset exploited for the development and validation of automated cyanobacteria quantification algorithm, ACQUA.

    PubMed

    Gandola, Emanuele; Antonioli, Manuela; Traficante, Alessio; Franceschini, Simone; Scardi, Michele; Congestri, Roberta

    2016-09-01

    The estimation and quantification of potentially toxic cyanobacteria in lakes and reservoirs are often used as a proxy of risk for water intended for human consumption and recreational activities. Here, we present data sets collected from three volcanic Italian lakes (Albano, Vico, Nemi) that present filamentous cyanobacteria strains at different environments. Presented data sets were used to estimate abundance and morphometric characteristics of potentially toxic cyanobacteria comparing manual Vs. automated estimation performed by ACQUA ("ACQUA: Automated Cyanobacterial Quantification Algorithm for toxic filamentous genera using spline curves, pattern recognition and machine learning" (Gandola et al., 2016) [1]). This strategy was used to assess the algorithm performance and to set up the denoising algorithm. Abundance and total length estimations were used for software development, to this aim we evaluated the efficiency of statistical tools and mathematical algorithms, here described. The image convolution with the Sobel filter has been chosen to denoise input images from background signals, then spline curves and least square method were used to parameterize detected filaments and to recombine crossing and interrupted sections aimed at performing precise abundances estimations and morphometric measurements. PMID:27500194

  15. Development of Algorithms for Control of Humidity in Plant Growth Chambers

    NASA Technical Reports Server (NTRS)

    Costello, Thomas A.

    2003-01-01

    Algorithms were developed to control humidity in plant growth chambers used for research on bioregenerative life support at Kennedy Space Center. The algorithms used the computed water vapor pressure (based on measured air temperature and relative humidity) as the process variable, with time-proportioned outputs to operate the humidifier and de-humidifier. Algorithms were based upon proportional-integral-differential (PID) and Fuzzy Logic schemes and were implemented using I/O Control software (OPTO-22) to define and download the control logic to an autonomous programmable logic controller (PLC, ultimate ethernet brain and assorted input-output modules, OPTO-22), which performed the monitoring and control logic processing, as well the physical control of the devices that effected the targeted environment in the chamber. During limited testing, the PLC's successfully implemented the intended control schemes and attained a control resolution for humidity of less than 1%. The algorithms have potential to be used not only with autonomous PLC's but could also be implemented within network-based supervisory control programs. This report documents unique control features that were implemented within the OPTO-22 framework and makes recommendations regarding future uses of the hardware and software for biological research by NASA.

  16. A Focus Group on Dental Pain Complaints with General Medical Practitioners: Developing a Treatment Algorithm

    PubMed Central

    Carter, Geoff; Abbey, Robyn

    2016-01-01

    Objective. The differential diagnosis of pain in the mouth can be challenging for general medical practitioners (GMPs) as many different dental problems can present with similar signs and symptoms. This study aimed to create a treatment algorithm for GMPs to effectively and appropriately refer the patients and prescribe antibiotics. Design. The study design is comprised of qualitative focus group discussions. Setting and Subjects. Groups of GMPs within the Gold Coast and Brisbane urban and city regions. Outcome Measures. Content thematically analysed and treatment algorithm developed. Results. There were 5 focus groups with 8-9 participants per group. Addressing whether antibiotics should be given to patients with dental pain was considered very important to GMPs to prevent overtreatment and creating antibiotic resistance. Many practitioners were unsure of what the different forms of dental pains represent. 90% of the practitioners involved agreed that the treatment algorithm was useful to daily practice. Conclusion. Common dental complaints and infections are seldom surgical emergencies but can result in prolonged appointments for those GMPs who do not regularly deal with these issues. The treatment algorithm for referral processes and prescriptions was deemed easily downloadable and simple to interpret and detailed but succinct enough for clinical use by GMPs. PMID:27462469

  17. Development of AN Algorithmic Procedure for the Detection of Conjugate Fragments

    NASA Astrophysics Data System (ADS)

    Filippas, D.; Georgopoulo, A.

    2013-07-01

    The rapid development of Computer Vision has contributed to the widening of the techniques and methods utilized by archaeologists for the digitization and reconstruction of historic objects by automating the matching of fragments, small or large. This paper proposes a novel method for the detection of conjugate fragments, based mainly on their geometry. Subsequently the application of the Fragmatch algorithm is presented, with an extensive analysis of both of its parts; the global and the partial matching of surfaces. The method proposed is based on the comparison of vectors and surfaces, performed linearly, for simplicity and speed. A series of simulations have been performed in order to test the limits of the algorithm for the noise and the accuracy of scanning, for the number of scan points, as well as for the wear of the surfaces and the diversity of shapes. Problems that have been encountered during the application of these examples are interpreted and ways of dealing with them are being proposed. In addition a practical application is presented to test the algorithm in real conditions. Finally, the key points of this work are being mentioned, followed by an analysis of the advantages and disadvantages of the proposed Fragmatch algorithm along with proposals for future work.

  18. Development of an Aircraft Approach and Departure Atmospheric Profile Generation Algorithm

    NASA Technical Reports Server (NTRS)

    Buck, Bill K.; Velotas, Steven G.; Rutishauser, David K. (Technical Monitor)

    2004-01-01

    In support of NASA Virtual Airspace Modeling and Simulation (VAMS) project, an effort was initiated to develop and test techniques for extracting meteorological data from landing and departing aircraft, and for building altitude based profiles for key meteorological parameters from these data. The generated atmospheric profiles will be used as inputs to NASA s Aircraft Vortex Spacing System (AVOLSS) Prediction Algorithm (APA) for benefits and trade analysis. A Wake Vortex Advisory System (WakeVAS) is being developed to apply weather and wake prediction and sensing technologies with procedures to reduce current wake separation criteria when safe and appropriate to increase airport operational efficiency. The purpose of this report is to document the initial theory and design of the Aircraft Approach Departure Atmospheric Profile Generation Algorithm.

  19. Algorithm developments for the Euler equations with calculations of transonic flows

    NASA Technical Reports Server (NTRS)

    Goorjian, Peter M.

    1987-01-01

    A new algorithm has been developed for the Euler equations that uses flux vector splitting in combination with the concept of rotating the coordinate system to the local streamwise direction. Flux vector biasing is applied along the local streamwise direction and central differencing is used transverse to the flow direction. The flux vector biasing is switched from upwind for supersonic flow to downwind-biased for subsonic flow. This switching is based on the Mach number; hence the proper domain of dependence is used in the supersonic regions and the switching occurs across shock waves. The theoretical basis and the development of the formulas for flux vector splitting are presented. Then several one-dimensional calculations are presented of steady and unsteady transonic flows, which demonstrate the stability and accuracy of the algorithm. Finally results are shown for unsteady transonic flow over an airfoil. The pressure coefficient plots show sharp transonic shock profiles, and the Mach contour plots show smoothly varying contours.

  20. Forecasting of the development of professional medical equipment engineering based on neuro-fuzzy algorithms

    NASA Astrophysics Data System (ADS)

    Vaganova, E. V.; Syryamkin, M. V.

    2015-11-01

    The purpose of the research is the development of evolutionary algorithms for assessments of promising scientific directions. The main attention of the present study is paid to the evaluation of the foresight possibilities for identification of technological peaks and emerging technologies in professional medical equipment engineering in Russia and worldwide on the basis of intellectual property items and neural network modeling. An automated information system consisting of modules implementing various classification methods for accuracy of the forecast improvement and the algorithm of construction of neuro-fuzzy decision tree have been developed. According to the study result, modern trends in this field will focus on personalized smart devices, telemedicine, bio monitoring, «e-Health» and «m-Health» technologies.

  1. The mass-action law based algorithm for cost-effective approach for cancer drug discovery and development.

    PubMed

    Chou, Ting-Chao

    2011-01-01

    The mass-action law based system analysis via mathematical induction and deduction lead to the generalized theory and algorithm that allows computerized simulation of dose-effect dynamics with small size experiments using a small number of data points in vitro, in animals, and in humans. The median-effect equation of the mass-action law deduced from over 300 mechanism specific-equations has been shown to be the unified theory that serves as the common-link for complicated biomedical systems. After using the median-effect principle as the common denominator, its applications are mechanism-independent, drug unit-independent, and dynamic order-independent; and can be used generally for single drug analysis or for multiple drug combinations in constant-ratio or non-constant ratios. Since the "median" is the common link and universal reference point in biological systems, these general enabling lead to computerized quantitative bio-informatics for econo-green bio-research in broad disciplines. Specific applications of the theory, especially relevant to drug discovery, drug combination, and clinical trials, have been cited or illustrated in terms of algorithms, experimental design and computerized simulation for data analysis. Lessons learned from cancer research during the past fifty years provide a valuable opportunity to reflect, and to improve the conventional divergent approach and to introduce a new convergent avenue, based on the mass-action law principle, for the efficient cancer drug discovery and the low-cost drug development.

  2. Ocean Observations with EOS/MODIS: Algorithm Development and Post Launch Studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1997-01-01

    Significant accomplishments made during the present reporting period are as follows: (1) We developed a new method for identifying the presence of absorbing aerosols and, simultaneously, performing atmospheric correction. The algorithm consists of optimizing the match between the top-of-atmosphere radiance spectrum and the result of models of both the ocean and aerosol optical properties; (2) We developed an algorithm for providing an accurate computation of the diffuse transmittance of the atmosphere given an aerosol model. A module for inclusion into the MODIS atmospheric-correction algorithm was completed; (3) We acquired reflectance data for oceanic whitecaps during a cruise on the RV Ka'imimoana in the Tropical Pacific (Manzanillo, Mexico to Honolulu, Hawaii). The reflectance spectrum of whitecaps was found to be similar to that for breaking waves in the surf zone measured by Frouin, Schwindling and Deschamps, however, the drop in augmented reflectance from 670 to 860 nm was not as great, and the magnitude of the augmented reflectance was significantly less than expected; and (4) We developed a method for the approximate correction for the effects of the MODIS polarization sensitivity. The correction, however, requires adequate characterization of the polarization sensitivity of MODIS prior to launch.

  3. Estimating SWE globally using AMSR-E observations: validation and algorithm development

    NASA Astrophysics Data System (ADS)

    Kelly, R. E.; Foster, J. L.; Hall, D. K.; Tedesco, M.

    2007-12-01

    The Advanced Microwave Scanning Radiometer - EOS (AMSR-E) instrument aboard NASA's Aqua satellite mission is used to estimate daily, five day maximum and monthly average snow water equivalent on a polar projected 25 x 25 km grid. The five-day and monthly products are based on the daily product which uses microwave brightness temperature observations at 10, 18, 36 and 89 GHz, two MODIS land cover products and a snow density "climatology" based on Russian and Canadian data. The current version (B07) of the product implements a dynamic algorithm that has developed from a static approach based on a method by Chang et al. (1987). Retrievals are performed at the native spatial resolution to reflect the measurement "process". This paper describes validation and algorithm developments to the product based on an assessment of the B07 version. New developments to the algorithm that improve the detection capability and that better correct for vegetation are described. The paper also identifies a pathway that will enable the product to reach level 1 validation status.

  4. Development of an apnea detection algorithm based on temporal analysis of thoracic respiratory effort signal

    NASA Astrophysics Data System (ADS)

    Dell'Aquila, C. R.; Cañadas, G. E.; Correa, L. S.; Laciar, E.

    2016-04-01

    This work describes the design of an algorithm for detecting apnea episodes, based on analysis of thorax respiratory effort signal. Inspiration and expiration time, and range amplitude of respiratory cycle were evaluated. For range analysis the standard deviation statistical tool was used over respiratory signal temporal windows. The validity of its performance was carried out in 8 records of Apnea-ECG database that has annotations of apnea episodes. The results are: sensitivity (Se) 73%, specificity (Sp) 83%. These values can be improving eliminating artifact of signal records.

  5. Fungal specificity bottlenecks during orchid germination and development.

    PubMed

    Bidartondo, Martin I; Read, David J

    2008-08-01

    Fungus-subsidized growth through the seedling stage is the most critical feature of the life history for the thousands of mycorrhizal plant species that propagate by means of 'dust seeds.' We investigated the extent of specificity towards fungi shown by orchids in the genera Cephalanthera and Epipactis at three stages of their life cycle: (i) initiation of germination, (ii) during seedling development, and (iii) in the mature photosynthetic plant. It is known that in the mature phase, plants of these genera can be mycorrhizal with a number of fungi that are simultaneously ectomycorrhizal with the roots of neighbouring forest trees. The extent to which earlier developmental stages use the same or a distinctive suite of fungi was unclear. To address this question, a total of 1500 packets containing orchid seeds were buried for up to 3 years in diverse European forest sites which either supported or lacked populations of helleborine orchids. After harvest, the fungi associated with the three developmental stages, and with tree roots, were identified via cultivation-independent molecular methods. While our results show that most fungal symbionts are ectomycorrhizal, differences were observed between orchids in the representation of fungi at the three life stages. In Cephalanthera damasonium and C. longifolia, the fungi detected in seedlings were only a subset of the wider range seen in germinating seeds and mature plants. In Epipactis atrorubens, the fungi detected were similar at all three life stages, but different fungal lineages produced a difference in seedling germination performance. Our results demonstrate that there can be a narrow checkpoint for mycorrhizal range during seedling growth relative to the more promiscuous germination and mature stages of these plants' life cycle.

  6. Development of a Distributed Routing Algorithm for a Digital Telephony Switch.

    NASA Astrophysics Data System (ADS)

    Al-Wakeel, Sami Saleh

    This research has developed a distributed routing algorithm and distributed control software to be implemented in modular digital telephone switching systems. The routing algorithm allows the routing information and the computer calculations for determining the route of switch calls to be divided evenly among the individual units of the digital switch, thus eliminating the need for the centralized complex routing logic. In addition a "routing language" for the storage of routing information has been developed that both compresses the routing information to conserve computer memory and speeds up the search through the routing information. A fully modular microprocessor-based digital switch that takes advantage of the routing algorithm was designed. The switch design achieves several objectives that include the reduction of digital telephone switch cost by taking full advantage of VLSI technology enabling manufacture by developing countries. By utilization of the technical advantages of the distributive routing algorithm, the modular switch can easily reach a capacity of 400,000 lines without degrading the system call processing or exceeding the system loading limits. A distributive control software was also designed to provide the main software protocols and routines necessary for a fully modular telephone switch. The design has several advantages over normal stored program control switches since it eliminates the need for centralized control software and allows the switch units to operate in any signaling environment. As a result, the possibility of total system breakdown is reduced, the switch software can be easily tested or modified, and the switch can interface any of the currently available communication technologies; namely, cable, VHF, satellite, R-1 or R-2 trunks and trunked radio phones. A second development of this research is a mathematical scheme to evaluate the performance of microprocessor-based digital telephone switches. The scheme evaluates various

  7. Development and evaluation of an articulated registration algorithm for human skeleton registration

    NASA Astrophysics Data System (ADS)

    Yip, Stephen; Perk, Timothy; Jeraj, Robert

    2014-03-01

    Accurate registration over multiple scans is necessary to assess treatment response of bone diseases (e.g. metastatic bone lesions). This study aimed to develop and evaluate an articulated registration algorithm for the whole-body skeleton registration in human patients. In articulated registration, whole-body skeletons are registered by auto-segmenting into individual bones using atlas-based segmentation, and then rigidly aligning them. Sixteen patients (weight = 80-117 kg, height = 168-191 cm) with advanced prostate cancer underwent the pre- and mid-treatment PET/CT scans over a course of cancer therapy. Skeletons were extracted from the CT images by thresholding (HU>150). Skeletons were registered using the articulated, rigid, and deformable registration algorithms to account for position and postural variability between scans. The inter-observers agreement in the atlas creation, the agreement between the manually and atlas-based segmented bones, and the registration performances of all three registration algorithms were all assessed using the Dice similarity index—DSIobserved, DSIatlas, and DSIregister. Hausdorff distance (dHausdorff) of the registered skeletons was also used for registration evaluation. Nearly negligible inter-observers variability was found in the bone atlases creation as the DSIobserver was 96 ± 2%. Atlas-based and manual segmented bones were in excellent agreement with DSIatlas of 90 ± 3%. Articulated (DSIregsiter = 75 ± 2%, dHausdorff = 0.37 ± 0.08 cm) and deformable registration algorithms (DSIregister = 77 ± 3%, dHausdorff = 0.34 ± 0.08 cm) considerably outperformed the rigid registration algorithm (DSIregsiter = 59 ± 9%, dHausdorff = 0.69 ± 0.20 cm) in the skeleton registration as the rigid registration algorithm failed to capture the skeleton flexibility in the joints. Despite superior skeleton registration performance, deformable registration algorithm failed to preserve the local rigidity of bones as over 60% of the

  8. Development and evaluation of an articulated registration algorithm for human skeleton registration.

    PubMed

    Yip, Stephen; Perk, Timothy; Jeraj, Robert

    2014-03-21

    Accurate registration over multiple scans is necessary to assess treatment response of bone diseases (e.g. metastatic bone lesions). This study aimed to develop and evaluate an articulated registration algorithm for the whole-body skeleton registration in human patients. In articulated registration, whole-body skeletons are registered by auto-segmenting into individual bones using atlas-based segmentation, and then rigidly aligning them. Sixteen patients (weight = 80-117 kg, height = 168-191 cm) with advanced prostate cancer underwent the pre- and mid-treatment PET/CT scans over a course of cancer therapy. Skeletons were extracted from the CT images by thresholding (HU>150). Skeletons were registered using the articulated, rigid, and deformable registration algorithms to account for position and postural variability between scans. The inter-observers agreement in the atlas creation, the agreement between the manually and atlas-based segmented bones, and the registration performances of all three registration algorithms were all assessed using the Dice similarity index-DSIobserved, DSIatlas, and DSIregister. Hausdorff distance (dHausdorff) of the registered skeletons was also used for registration evaluation. Nearly negligible inter-observers variability was found in the bone atlases creation as the DSIobserver was 96 ± 2%. Atlas-based and manual segmented bones were in excellent agreement with DSIatlas of 90 ± 3%. Articulated (DSIregsiter = 75 ± 2%, dHausdorff = 0.37 ± 0.08 cm) and deformable registration algorithms (DSIregister = 77 ± 3%, dHausdorff = 0.34 ± 0.08 cm) considerably outperformed the rigid registration algorithm (DSIregsiter = 59 ± 9%, dHausdorff = 0.69 ± 0.20 cm) in the skeleton registration as the rigid registration algorithm failed to capture the skeleton flexibility in the joints. Despite superior skeleton registration performance, deformable registration algorithm failed to preserve the local rigidity of bones as over 60% of the skeletons

  9. Domain-Specific Languages For Developing and Deploying Signature Discovery Workflows

    SciTech Connect

    Jacob, Ferosh; Wynne, Adam S.; Liu, Yan; Gray, Jeff

    2013-12-02

    Domain-agnostic Signature Discovery entails scientific investigation across multiple domains through the re-use of existing algorithms into workflows. The existing algorithms may be written in any programming language for various hardware architectures (e.g., desktops, commodity clusters, and specialized parallel hardware platforms). This raises an engineering issue in generating Web services for heterogeneous algorithms so that they can be composed into a scientific workflow environment (e.g., Taverna). In this paper, we present our software tool that defines two simple Domain-Specific Languages (DSLs) to automate these processes: SDL and WDL. Our Service Description Language (SDL) describes key elements of a signature discovery algorithm and generates the service code. The Workflow Description Language (WDL) describes the pipeline of services and generates deployable artifacts for the Taverna workflow management system. We demonstrate our tool with a landscape classification example that is represented by BLAST workflows composed of services that wrap original scripts.

  10. Development of immunoglobulins to venoms during specific immunotherapy.

    PubMed

    Palma-Carlos, M L; Santos, M C; Pedro, E; Branco-Ferreira, M; Spínola, A; Palma-Carlos, A G

    1999-03-01

    Immunotherapy against venoms (itv) is an efficacious treatment for most subjects who are allergic to hymnenoptera venoms. The authors studied 8 patients: 7 who were allergic to honey been venom and 1 who was allergic to wasp venom, followed for two years during immunotherapy with an aqueous extract of pure venoms from ALBAY Dome Hollister Stier. Specific IgE and IgG4 were evaluated by the Elisa Cap Technique of Pharmacia at different times: T0 before immunotherapy, T1 (one year after) and T2 (2 years after). A significant fall of specific IgE (p < 0.02) and a significant increase in specific IgG4 (p < 0.008) were seen during the two years in all patients. Four of the patients were re-stung and none had systemic reactions. These results suggest that increase in specific IgG4 is correlated with the protective effect of immunotherapy. PMID:10226679

  11. Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care

    PubMed Central

    Li, Qi; Melton, Kristin; Lingren, Todd; Kirkendall, Eric S; Hall, Eric; Zhai, Haijun; Ni, Yizhao; Kaiser, Megan; Stoutenborough, Laura; Solti, Imre

    2014-01-01

    Background Although electronic health records (EHRs) have the potential to provide a foundation for quality and safety algorithms, few studies have measured their impact on automated adverse event (AE) and medical error (ME) detection within the neonatal intensive care unit (NICU) environment. Objective This paper presents two phenotyping AE and ME detection algorithms (ie, IV infiltrations, narcotic medication oversedation and dosing errors) and describes manual annotation of airway management and medication/fluid AEs from NICU EHRs. Methods From 753 NICU patient EHRs from 2011, we developed two automatic AE/ME detection algorithms, and manually annotated 11 classes of AEs in 3263 clinical notes. Performance of the automatic AE/ME detection algorithms was compared to trigger tool and voluntary incident reporting results. AEs in clinical notes were double annotated and consensus achieved under neonatologist supervision. Sensitivity, positive predictive value (PPV), and specificity are reported. Results Twelve severe IV infiltrates were detected. The algorithm identified one more infiltrate than the trigger tool and eight more than incident reporting. One narcotic oversedation was detected demonstrating 100% agreement with the trigger tool. Additionally, 17 narcotic medication MEs were detected, an increase of 16 cases over voluntary incident reporting. Conclusions Automated AE/ME detection algorithms provide higher sensitivity and PPV than currently used trigger tools or voluntary incident-reporting systems, including identification of potential dosing and frequency errors that current methods are unequipped to detect. PMID:24401171

  12. Development of Analytical Algorithm for the Performance Analysis of Power Train System of an Electric Vehicle

    NASA Astrophysics Data System (ADS)

    Kim, Chul-Ho; Lee, Kee-Man; Lee, Sang-Heon

    Power train system design is one of the key R&D areas on the development process of new automobile because an optimum size of engine with adaptable power transmission which can accomplish the design requirement of new vehicle can be obtained through the system design. Especially, for the electric vehicle design, very reliable design algorithm of a power train system is required for the energy efficiency. In this study, an analytical simulation algorithm is developed to estimate driving performance of a designed power train system of an electric. The principal theory of the simulation algorithm is conservation of energy with several analytical and experimental data such as rolling resistance, aerodynamic drag, mechanical efficiency of power transmission etc. From the analytical calculation results, running resistance of a designed vehicle is obtained with the change of operating condition of the vehicle such as inclined angle of road and vehicle speed. Tractive performance of the model vehicle with a given power train system is also calculated at each gear ratio of transmission. Through analysis of these two calculation results: running resistance and tractive performance, the driving performance of a designed electric vehicle is estimated and it will be used to evaluate the adaptability of the designed power train system on the vehicle.

  13. Algorithm and code development for unsteady three-dimensional Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Obayashi, Shigeru

    1994-01-01

    Aeroelastic tests require extensive cost and risk. An aeroelastic wind-tunnel experiment is an order of magnitude more expensive than a parallel experiment involving only aerodynamics. By complementing the wind-tunnel experiments with numerical simulations, the overall cost of the development of aircraft can be considerably reduced. In order to accurately compute aeroelastic phenomenon it is necessary to solve the unsteady Euler/Navier-Stokes equations simultaneously with the structural equations of motion. These equations accurately describe the flow phenomena for aeroelastic applications. At ARC a code, ENSAERO, is being developed for computing the unsteady aerodynamics and aeroelasticity of aircraft, and it solves the Euler/Navier-Stokes equations. The purpose of this cooperative agreement was to enhance ENSAERO in both algorithm and geometric capabilities. During the last five years, the algorithms of the code have been enhanced extensively by using high-resolution upwind algorithms and efficient implicit solvers. The zonal capability of the code has been extended from a one-to-one grid interface to a mismatching unsteady zonal interface. The geometric capability of the code has been extended from a single oscillating wing case to a full-span wing-body configuration with oscillating control surfaces. Each time a new capability was added, a proper validation case was simulated, and the capability of the code was demonstrated.

  14. Development of an algorithm to predict comfort of wheelchair fit based on clinical measures.

    PubMed

    Kon, Keisuke; Hayakawa, Yasuyuki; Shimizu, Shingo; Nosaka, Toshiya; Tsuruga, Takeshi; Matsubara, Hiroyuki; Nomura, Tomohiro; Murahara, Shin; Haruna, Hirokazu; Ino, Takumi; Inagaki, Jun; Kobayashi, Toshiki

    2015-09-01

    [Purpose] The purpose of this study was to develop an algorithm to predict the comfort of a subject seated in a wheelchair, based on common clinical measurements and without depending on verbal communication. [Subjects] Twenty healthy males (mean age: 21.5 ± 2 years; height: 171 ± 4.3 cm; weight: 56 ± 12.3 kg) participated in this study. [Methods] Each experimental session lasted for 60 min. The clinical measurements were obtained under 4 conditions (good posture, with and without a cushion; bad posture, with and without a cushion). Multiple regression analysis was performed to determine the relationship between a visual analogue scale and exercise physiology parameters (respiratory and metabolism), autonomic nervous parameters (heart rate, blood pressure, and salivary amylase level), and 3D-coordinate posture parameters (good or bad posture). [Results] For the equation (algorithm) to predict the visual analogue scale score, the adjusted multiple correlation coefficient was 0.72, the residual standard deviation was 1.2, and the prediction error was 12%. [Conclusion] The algorithm developed in this study could predict the comfort of healthy male seated in a wheelchair with 72% accuracy. PMID:26504299

  15. Development of an algorithm to predict comfort of wheelchair fit based on clinical measures

    PubMed Central

    Kon, Keisuke; Hayakawa, Yasuyuki; Shimizu, Shingo; Nosaka, Toshiya; Tsuruga, Takeshi; Matsubara, Hiroyuki; Nomura, Tomohiro; Murahara, Shin; Haruna, Hirokazu; Ino, Takumi; Inagaki, Jun; Kobayashi, Toshiki

    2015-01-01

    [Purpose] The purpose of this study was to develop an algorithm to predict the comfort of a subject seated in a wheelchair, based on common clinical measurements and without depending on verbal communication. [Subjects] Twenty healthy males (mean age: 21.5 ± 2 years; height: 171 ± 4.3 cm; weight: 56 ± 12.3 kg) participated in this study. [Methods] Each experimental session lasted for 60 min. The clinical measurements were obtained under 4 conditions (good posture, with and without a cushion; bad posture, with and without a cushion). Multiple regression analysis was performed to determine the relationship between a visual analogue scale and exercise physiology parameters (respiratory and metabolism), autonomic nervous parameters (heart rate, blood pressure, and salivary amylase level), and 3D-coordinate posture parameters (good or bad posture). [Results] For the equation (algorithm) to predict the visual analogue scale score, the adjusted multiple correlation coefficient was 0.72, the residual standard deviation was 1.2, and the prediction error was 12%. [Conclusion] The algorithm developed in this study could predict the comfort of healthy male seated in a wheelchair with 72% accuracy. PMID:26504299

  16. An Effort to Develop an Algorithm to Target Abdominal CT Scans for Patients After Gastric Bypass.

    PubMed

    Pernar, Luise I M; Lockridge, Ryan; McCormack, Colleen; Chen, Judy; Shikora, Scott A; Spector, David; Tavakkoli, Ali; Vernon, Ashley H; Robinson, Malcolm K

    2016-10-01

    Abdominal CT (abdCT) scans are frequently ordered for Roux-en-Y gastric bypass (RYGB) patients presenting to the emergency department (ED) with abdominal pain, but often do not reveal intra-abdominal pathology. We aimed to develop an algorithm for rational ordering of abdCTs. We retrospectively reviewed our institution's RYGB patients presenting acutely with abdominal pain, documenting clinical and laboratory data, and scan results. Associations of clinical parameters to abdCT results were examined for outcome predictors. Of 1643 RYGB patients who had surgery between 2005 and 2015, 355 underwent 387 abdCT scans. Based on abdCT, 48 (12 %) patients required surgery and 86 (22 %) another intervention. No clinical or laboratory parameter predicted imaging results. Imaging decisions for RYGB patients do not appear to be amenable to a simple algorithm, and patient work-up should be based on astute clinical judgment.

  17. Ocean Observations with EOS/MODIS: Algorithm Development and Post Launch Studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.; Conboy, Barbara (Technical Monitor)

    1999-01-01

    This separation has been logical thus far; however, as launch of AM-1 approaches, it must be recognized that many of these activities will shift emphasis from algorithm development to validation. For example, the second, third, and fifth bullets will become almost totally validation-focussed activities in the post-launch era, providing the core of our experimental validation effort. Work under the first bullet will continue into the post-launch time frame, driven in part by algorithm deficiencies revealed as a result of validation activities. Prior to the start of the 1999 fiscal year (FY99) we were requested to prepare a brief plan for our FY99 activities. This plan is included as Appendix 1. The present report describes the progress made on our planned activities.

  18. A simulation environment for modeling and development of algorithms for ensembles of mobile microsystems

    NASA Astrophysics Data System (ADS)

    Fink, Jonathan; Collins, Tom; Kumar, Vijay; Mostofi, Yasamin; Baras, John; Sadler, Brian

    2009-05-01

    The vision for the Micro Autonomous Systems Technologies MAST programis to develop autonomous, multifunctional, collaborative ensembles of agile, mobile microsystems to enhance tactical situational awareness in urban and complex terrain for small unit operations. Central to this vision is the ability to have multiple, heterogeneous autonomous assets to function as a single cohesive unit, that is adaptable, responsive to human commands and resilient to adversarial conditions. This paper represents an effort to develop a simulation environment for studying control, sensing, communication, perception, and planning methodologies and algorithms.

  19. Development of a block Lanczos algorithm for free vibration analysis of spinning structures

    NASA Technical Reports Server (NTRS)

    Gupta, K. K.; Lawson, C. L.

    1988-01-01

    This paper is concerned with the development of an efficient eigenproblem solution algorithm and an associated computer program for the economical solution of the free vibration problem of complex practical spinning structural systems. Thus, a detailed description of a newly developed block Lanczos procedure is presented in this paper that employs only real numbers in all relevant computations and also fully exploits sparsity of associated matrices. The procedure is capable of computing multiple roots and proves to be most efficient compared to other existing similar techniques.

  20. Developments of global greenhouse gas retrieval algorithm based on Optimal Estimation Method

    NASA Astrophysics Data System (ADS)

    Kim, W. V.; Kim, J.; Lee, H.; Jung, Y.; Boesch, H.

    2013-12-01

    After the industrial revolution, atmospheric carbon dioxide concentration increased drastically over the last 250 years. It is still increasing and over than 400ppm of carbon dioxide was measured at Mauna Loa observatory for the first time which value was considered as important milestone. Therefore, understanding the source, emission, transport and sink of global carbon dioxide is unprecedentedly important. Currently, Total Carbon Column Observing Network (TCCON) is operated to observe CO2 concentration by ground base instruments. However, the number of site is very few and concentrated to Europe and North America. Remote sensing of CO2 could supplement those limitations. Greenhouse Gases Observing SATellite (GOSAT) which was launched 2009 is measuring column density of CO2 and other satellites are planned to launch in a few years. GOSAT provide valuable measurement data but its low spatial resolution and poor success rate of retrieval due to aerosol and cloud, forced the results to cover less than half of the whole globe. To improve data availability, accurate aerosol information is necessary, especially for East Asia region where the aerosol concentration is higher than other region. For the first step, we are developing CO2 retrieval algorithm based on optimal estimation method with VLIDORT the vector discrete ordinate radiative transfer model. Proto type algorithm, developed from various combinations of state vectors to find best combination of state vectors, shows appropriate result and good agreement with TCCON measurements. To reduce calculation cost low-stream interpolation is applied for model simulation and the simulation time is drastically reduced. For the further study, GOSAT CO2 retrieval algorithm will be combined with accurate GOSAT-CAI aerosol retrieval algorithm to obtain more accurate result especially for East Asia.

  1. Status of GCOM-W1/AMSR2 development, algorithms, and products

    NASA Astrophysics Data System (ADS)

    Maeda, Takashi; Imaoka, Keiji; Kachi, Misako; Fujii, Hideyuki; Shibata, Akira; Naoki, Kazuhiro; Kasahara, Marehito; Ito, Norimasa; Nakagawa, Keizo; Oki, Taikan

    2011-11-01

    The Global Change Observation Mission (GCOM) consists of two polar orbiting satellite observing systems, GCOM-W (Water) and GCOM-C (Climate), and three generations to achieve global and long-term monitoring of the Earth. GCOM-W1 is the first satellite of the GCOM-W series and scheduled to be launched in Japanese fiscal year 2011. The Advanced Microwave Scanning Radiometer-2 (AMSR2) will be the mission instrument of GCOM-W1. AMSR2 will extend the observation of currently ongoing AMSR-E on EOS Aqua platform. Development of GCOM-W1 and AMSR2 is progressing on schedule. Proto-flight test (PFT) of AMSR2 was completed and delivered to the GCOM-W1 satellite system. Currently, the GCOM-W1 system is under PFT at Tsukuba Space Center until summer 2011 before shipment to launch site, Tanegashima Space Center. Development of retrieval algorithms has been also progressing with the collaboration of the principal investigators. Based on the algorithm comparison results, at-launch standard algorithms were selected and implemented into the processing system. These algorithms will be validated and updated during the initial calibration and validation phase. As an instrument calibration activity, a deep space calibration maneuver is planned during the initial checkout phase, to confirm the consistency of cold sky calibration and intra-scan biases. Maintaining and expanding the validation sites are also ongoing activities. A flux tower observing instruments will be introduced into the Murray-Darling basin in Australia, where the validation of other soil moisture instruments (e.g., SMOS and SMAP) is planned.

  2. CoSMIR Measurements in Support of GPM Algorithm Development and Validation

    NASA Astrophysics Data System (ADS)

    Skofronick Jackson, G.; Wang, J. R.

    2012-12-01

    The Conical Scanning Millimeter-wave Imaging Radiometer (CoSMIR) is an aircraft instrument flown to reduce assumptions in GPM (Global Precipitation Measurement) satellite retrieval algorithms and to provide validation data. This instrument plays the role of an airborne high-frequency simulator for the GPM mission's Microwave Imager (GMI) and has channels particularly sensitive to precipitating ice and snow in clouds. CoSMIR flew on the ER-2 in the Midlatitude Continental Convective Cloud Experiment (MC3E) field campaign in Oklahoma during April-June 2011 and on the DC-8 for the GPM Cold-season Precipitation Experiment (GCPEx) in January-February 2012 in Ontario, Canada. A unique feature of CoSMIR is that it is programmed to acquire radiometric measurements in both conical and cross-track scans nearly simultaneously. An advantage of this dual scanning is that it allows comparison/validation with satellite measurements in conical modes (e.g., TRMM, SSMIS) and cross-track modes (e.g., ATMS, MHS). The GPM Microwave Imager (GMI), scheduled for launch in early 2014, includes 13 channels ranging from 10 to 183±7 GHz. Precipitation retrievals over land with a microwave imager such as the Tropical Rainfall Measurement Mission (TRMM) Microwave Imager (TMI) often face difficulties in measuring precipitation because of the lack of surface radiometric contrast and homogeneity. GMI with additional high frequency channels, beyond those of TMI, should improve the retrieval skill over land surface. Furthermore, GMI could expand the global precipitation retrievals to include frozen hydrometeors such as graupel above the melting layer all the way to snow falling at the Earth's surface. To explore these opportunities and acquire data for algorithm development, CoSMIR has six channels that precisely match GMI high frequency channels with the following: 89 (dual-polarized), 165 (dual-polarized), 183.3±1, 183.3±3, and 183.3±7 GHz. During the MC3E field campaign, CoSMIR was on the ER

  3. The development of line-scan image recognition algorithms for the detection of frass on mature tomatoes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In this research, a multispectral algorithm derived from hyperspectral line-scan fluorescence imaging under violet LED excitation was developed for the detection of frass contamination on mature tomatoes. The algorithm utilized the fluorescence intensities at two wavebands, 664 nm and 690 nm, for co...

  4. Algorithm development and verification of UASCM for multi-dimension and multi-group neutron kinetics model

    SciTech Connect

    Si, S.

    2012-07-01

    The Universal Algorithm of Stiffness Confinement Method (UASCM) for neutron kinetics model of multi-dimensional and multi-group transport equations or diffusion equations has been developed. The numerical experiments based on transport theory code MGSNM and diffusion theory code MGNEM have demonstrated that the algorithm has sufficient accuracy and stability. (authors)

  5. Microphysical particle properties derived from inversion algorithms developed in the framework of EARLINET

    NASA Astrophysics Data System (ADS)

    Müller, Detlef; Böckmann, Christine; Kolgotin, Alexei; Schneidenbach, Lars; Chemyakin, Eduard; Rosemann, Julia; Znak, Pavel; Romanov, Anton

    2016-10-01

    We present a summary on the current status of two inversion algorithms that are used in EARLINET (European Aerosol Research Lidar Network) for the inversion of data collected with EARLINET multiwavelength Raman lidars. These instruments measure backscatter coefficients at 355, 532, and 1064 nm, and extinction coefficients at 355 and 532 nm. Development of these two algorithms started in 2000 when EARLINET was founded. The algorithms are based on a manually controlled inversion of optical data which allows for detailed sensitivity studies. The algorithms allow us to derive particle effective radius as well as volume and surface area concentration with comparably high confidence. The retrieval of the real and imaginary parts of the complex refractive index still is a challenge in view of the accuracy required for these parameters in climate change studies in which light absorption needs to be known with high accuracy. It is an extreme challenge to retrieve the real part with an accuracy better than 0.05 and the imaginary part with accuracy better than 0.005-0.1 or ±50 %. Single-scattering albedo can be computed from the retrieved microphysical parameters and allows us to categorize aerosols into high- and low-absorbing aerosols. On the basis of a few exemplary simulations with synthetic optical data we discuss the current status of these manually operated algorithms, the potentially achievable accuracy of data products, and the goals for future work. One algorithm was used with the purpose of testing how well microphysical parameters can be derived if the real part of the complex refractive index is known to at least 0.05 or 0.1. The other algorithm was used to find out how well microphysical parameters can be derived if this constraint for the real part is not applied. The optical data used in our study cover a range of Ångström exponents and extinction-to-backscatter (lidar) ratios that are found from lidar measurements of various aerosol types. We also tested

  6. China Refrigerator Information Label: Specification Development and Potential Impact

    SciTech Connect

    Fridley, David; Fridley, David; Zheng, Nina; Zhou, Nan; Aden, Nathaniel; Lin, Jiang; Jianhong, Cheng; Sakamoto, Tomoyuki

    2008-02-01

    In the last five years, China's refrigerator market has grown rapidly, and now urban markets are showing signs of saturation, with ownership rates in urban households reaching 92%. Rural markets continue to grow from a much lower base. As a result of this growth, the Chinese government in 2006 decided to revise the refrigerator standards and its associated efficiency grades for the mandatory energy information label. In the Chinese standards process, the efficiency grades for the information label are tied to the minimum standards. Work on the minimum standards revision began in 2006 and continued through the first half of 2007, when the draft standard was completed under the direction of the China National Institute of Standardization (CNIS). Development of the information label grades required consideration of stakeholder input, continuity with the previous grade classification, ease of implementation, and potential impacts on the market. In this process, CLASP, with the support of METI/IEEJ, collaborated with CNIS to develop the efficiency grades, providing technical input to the process, comment and advice on particular technical issues, and evaluation of the results. After three months of effort and three drafts of the final grade specifications, this work was completed. In addition, in order to effectively evaluate the impact of the label on China's market, CLASP further provided assistance to CNIS to collect data on both the efficiency distribution and product volume distribution of refrigerators on the market. The new information label thresholds to be implemented in 2008 maintain the approach first adopted in 2005 of establishing efficiency levels relative to the minimum standard, but increased the related required efficiency levels by 20% over those established in 2003 and implemented in 2005. The focus of improvement was on the standard refrigerator/freezer (class 5), which constitutes the bulk of the Chinese market. Indeed, the new requirements to

  7. The evolutionary development of high specific impulse electric thruster technology

    NASA Technical Reports Server (NTRS)

    Sovey, James S.; Hamley, John A.; Patterson, Michael J.; Rawlin, Vincent K.; Myers, Roger M.

    1992-01-01

    Electric propulsion flight and technology demonstrations conducted primarily by Europe, Japan, China, the U.S., and the USSR are reviewed. Evolutionary mission applications for high specific impulse electric thruster systems are discussed, and the status of arcjet, ion, and magnetoplasmadynamic thrusters and associated power processor technologies are summarized.

  8. Developing Communication Skills: General Considerations and Specific Techniques.

    ERIC Educational Resources Information Center

    Joiner, Elizabeth Garner; Westphal, Patricia Barney, Ed.

    This practical book is designed for the classroom teacher of a second or foreign language at any level. The articles are grouped into two distinct but interdependent sections on general considerations and specific techniques. The contents of the first section are as follows: "Moi Tarzan, Vous Jane?: A Study of Communicative Competence" by P.B.…

  9. Developing Structural Specification: Productivity in Early Hebrew Verb Usage

    ERIC Educational Resources Information Center

    Lustigman, Lyle

    2013-01-01

    The study investigates acquisition of verb inflections by four monolingual Hebrew-acquiring children from middle-class backgrounds, audio-recorded in longitudinal, weekly samples at a mean age-range of between 18 and 26 months. Productive use of inflectional morphology is shown to manifest increasing structural specification, as a function of…

  10. Global and gene specific DNA methylation changes during zebrafish development

    Technology Transfer Automated Retrieval System (TEKTRAN)

    DNA methylation is dynamic through the life of an organism. In this study, we measured the global and gene specific DNA methylation changes in zebrafish at different developmental stages. We found that the methylation percentage of cytosines was 11.75 ± 0.96% in 3.3 hour post fertilization (hpf) zeb...

  11. Developing Media Literacy Skills for Students with Specific Learning Disabilities

    ERIC Educational Resources Information Center

    James, Jessica Everett

    2014-01-01

    Students with specific learning disabilities (SLD), such as emotional disturbances, and speech or language impairment, attending high schools located in the rural Mississippi Delta lack media literacy skills that could impact the student's ability to successfully graduate from high school. The purpose of this qualitative case study was to identify…

  12. Development and evaluation of collision warning/collision avoidance algorithms using an errable driver model

    NASA Astrophysics Data System (ADS)

    Yang, Hsin-Hsiang; Peng, Huei

    2010-12-01

    Collision warning/collision avoidance (CW/CA) systems must be designed to work seamlessly with a human driver, providing warning or control actions when the driver's response (or lack of) is deemed inappropriate. The effectiveness of CW/CA systems working with a human driver needs to be evaluated thoroughly because of legal/liability and other (e.g. traffic flow) concerns. CW/CA systems tuned only under open-loop manoeuvres were frequently found to work unsatisfactorily with human-in-the-loop. However, tuning CW/CA systems with human drivers co-existing is slow and non-repeatable. Driver models, if constructed and used properly, can capture human/control interactions and accelerate the CW/CA development process. Design and evaluation methods for CW/CA algorithms can be categorised into three approaches, scenario-based, performance-based and human-centred. The strength and weakness of these approaches were discussed in this paper and a humanised errable driver model was introduced to improve the developing process. The errable driver model used in this paper is a model that emulates human driver's functions and can generate both nominal (error-free) and devious (with error) behaviours. The car-following data used for developing and validating the model were obtained from a large-scale naturalistic driving database. Three error-inducing behaviours were introduced: human perceptual limitation, time delay and distraction. By including these error-inducing behaviours, rear-end collisions with a lead vehicle were found to occur at a probability similar to traffic accident statistics in the USA. This driver model is then used to evaluate the performance of several existing CW/CA algorithms. Finally, a new CW/CA algorithm was developed based on this errable driver model.

  13. Development of algorithms for understanding the temporal and spatial variability of the earth's radiation balance

    NASA Astrophysics Data System (ADS)

    Brooks, D. R.; Harrison, E. F.; Minnis, P.; Suttles, J. T.; Kandel, R. S.

    1986-05-01

    A brief description is given of how temporal and spatial variability in the earth's radiative behavior influences the goals of satellite radiation monitoring systems and how some previous systems have addressed the existing problems. Then, results of some simulations of radiation budget monitoring missions are presented. These studies led to the design of the Earth Radiation Budget Experiment (ERBE). A description is given of the temporal and spatial averaging algorithms developed for the ERBE data analysis. These algorithms are intended primarily to produce monthly averages of the net radiant exitance on regional, zonal, and global scales and to provide insight into the regional diurnal variability of radiative parameters such as albedo and long-wave radiant exitance. The algorithms are applied to scanner and nonscanner data for up to three satellites. Modeling of dialy shortwave albedo and radiant exitance with satellite samling that is insufficient to fully account for changing meteorology is discussed in detail. Studies performed during the ERBE mission and software design are reviewed. These studies provide quantitative estimates of the effects of temporally sparse and biased sampling on inferred diurnal and regional radiative parameters. Other topics covered include long-wave diurnal modeling, extraction of a regional monthly net clear-sky radiation budget, the statistical significance of observed diurnal variability, quality control of the analysis, and proposals for validating the results of ERBE time and space averaging.

  14. GLASS daytime all-wave net radiation product: Algorithm development and preliminary validation

    DOE PAGES

    Jiang, Bo; Liang, Shunlin; Ma, Han; Zhang, Xiaotong; Xiao, Zhiqiang; Zhao, Xiang; Jia, Kun; Yao, Yunjun; Jia, Aolin

    2016-03-09

    Mapping surface all-wave net radiation (Rn) is critically needed for various applications. Several existing Rn products from numerical models and satellite observations have coarse spatial resolutions and their accuracies may not meet the requirements of land applications. In this study, we develop the Global LAnd Surface Satellite (GLASS) daytime Rn product at a 5 km spatial resolution. Its algorithm for converting shortwave radiation to all-wave net radiation using the Multivariate Adaptive Regression Splines (MARS) model is determined after comparison with three other algorithms. The validation of the GLASS Rn product based on high-quality in situ measurements in the United Statesmore » shows a coefficient of determination value of 0.879, an average root mean square error value of 31.61 Wm-2, and an average bias of 17.59 Wm-2. Furthermore, we also compare our product/algorithm with another satellite product (CERES-SYN) and two reanalysis products (MERRA and JRA55), and find that the accuracy of the much higher spatial resolution GLASS Rn product is satisfactory. The GLASS Rn product from 2000 to the present is operational and freely available to the public.« less

  15. Development of a general learning algorithm with applications in nuclear reactor systems

    SciTech Connect

    Brittain, C.R.; Otaduy, P.J.; Perez, R.B.

    1989-12-01

    The objective of this study was development of a generalized learning algorithm that can learn to predict a particular feature of a process by observation of a set of representative input examples. The algorithm uses pattern matching and statistical analysis techniques to find a functional relationship between descriptive attributes of the input examples and the feature to be predicted. The algorithm was tested by applying it to a set of examples consisting of performance descriptions for 277 fuel cycles of Oak Ridge National Laboratory's High Flux Isotope Reactor (HFIR). The program learned to predict the critical rod position for the HFIR from core configuration data prior to reactor startup. The functional relationship bases its predictions on initial core reactivity, the number of certain targets placed in the center of the reactor, and the total exposure of the control plates. Twelve characteristic fuel cycle clusters were identified. Nine fuel cycles were diagnosed as having noisy data, and one could not be predicted by the functional relationship. 13 refs., 6 figs.

  16. Development of a new time domain-based algorithm for train detection and axle counting

    NASA Astrophysics Data System (ADS)

    Allotta, B.; D'Adamio, P.; Meli, E.; Pugi, L.

    2015-12-01

    This paper presents an innovative train detection algorithm, able to perform the train localisation and, at the same time, to estimate its speed, the crossing times on a fixed point of the track and the axle number. The proposed solution uses the same approach to evaluate all these quantities, starting from the knowledge of generic track inputs directly measured on the track (for example, the vertical forces on the sleepers, the rail deformation and the rail stress). More particularly, all the inputs are processed through cross-correlation operations to extract the required information in terms of speed, crossing time instants and axle counter. This approach has the advantage to be simple and less invasive than the standard ones (it requires less equipment) and represents a more reliable and robust solution against numerical noise because it exploits the whole shape of the input signal and not only the peak values. A suitable and accurate multibody model of railway vehicle and flexible track has also been developed by the authors to test the algorithm when experimental data are not available and in general, under any operating conditions (fundamental to verify the algorithm accuracy and robustness). The railway vehicle chosen as benchmark is the Manchester Wagon, modelled in the Adams VI-Rail environment. The physical model of the flexible track has been implemented in the Matlab and Comsol Multiphysics environments. A simulation campaign has been performed to verify the performance and the robustness of the proposed algorithm, and the results are quite promising. The research has been carried out in cooperation with Ansaldo STS and ECM Spa.

  17. Development of Bio-Optical Algorithms for Geostationary Ocean Color Imager

    NASA Astrophysics Data System (ADS)

    Ryu, J.; Moon, J.; Min, J.; Palanisamy, S.; Han, H.; Ahn, Y.

    2007-12-01

    GOCI, the first Geostationary Ocean Color Imager, shall be operated in a staring-frame capture mode onboard its Communication Ocean and Meteorological Satellite (COMS) and tentatively scheduled for launch in 2008. The mission concept includes eight visible-to-near-infrared bands, 0.5 km pixel resolution, and a coverage region of 2,500 ¢®¢¯ 2,500 km centered at Korea. The GOCI is expected to provide SeaWiFS quality observations for a single study area with imaging interval of 1 hour from 10 am to 5 pm. In the GOCI swath area, the optical properties of the East Sea (typical of Case-I water), the Yellow Sea and East China Sea (typical of Case-II water) are investigated. For developing the GOCI bio-optical algorithms in optically more complex waters, it is necessary to study and understand the optical properties around the Korean Sea. Radiometric measurements were made using WETLabs AC-S, TriOS RAMSES ACC/ARC, and ASD FieldSpec Pro Dual VNIR Spectroradiometer. Seawater samples were collected concurrently with the radiometric measurements at about 300 points around the Korean Sea during 1998 to 2007. The absorption coefficients were determined using Perkin-Elmer Lambda 19 dual-beam spectrophotometer. We analyzed the absorption coefficient of sea water constituents such as phytoplankton, Suspended Sediment (SS) and Dissolved Organic Matter (DOM). Two kinds of chlorophyll algorithms are developed by using statistical regression and fluorescence-based technique considering the bio- optical properties in Case-II waters. Fluorescence measurements were related to in situ Chl-a concentrations to obtain the Flu(681), Flu(688) and Flu(area) algorithms, which were compared with those from standard spectral ratios of the remote sensing reflectance. The single band algorithm for is derived by relationship between Rrs (555) and in situ concentration. The CDOM is estimated by absorption spectra and its slope centered at 440 nm wavelength. These standard algorithms will be

  18. [Current Development of Breast-Specific Gamma Imaging (BSGI) Technique].

    PubMed

    Sun, Da; Chen, Weijun

    2015-03-01

    Breast-Specific Gamma Imaging (BSGI) is an improved and optimizing nuclear medicine breast imaging technique on the basis of traditional gamma camera. It uses a high resolution, small field-of-view scintilla detector. The detector is designed with 3 073 individual detector crystals and 48 position-sensitive photomultiplier tubes. The FOV of detector is 15 cm x 20 cm, and optimal system resolution for breast imaging is 3 mm, can detect the diameter of only 2-3 mm small lesions. BSGI has better sensitivity in detecting subcentimetre or nonpalpable breast cancer. The sensitivity for the diagnosis of breast cancer is high, not influenced by the density of the breast tissue, implants, architectural distortion-or scars from prior surgery or radiation. So it is called a high resolution, small field-of-view breast-specific gamma camera. PMID:26204740

  19. The evolutionary development of high specific impulse electric thruster technology

    NASA Technical Reports Server (NTRS)

    Sovey, James S.; Hamley, John A.; Patterson, Michael J.; Rawlin, Vincent K.; Myers, Roger M.

    1992-01-01

    Electric propulsion flight and technology demonstrations conducted in the USA, Europe, Japan, China, and USSR are reviewed with reference to the major flight qualified electric propulsion systems. These include resistojets, ion thrusters, ablative pulsed plasma thrusters, stationary plasma thrusters, pulsed magnetoplasmic thrusters, and arcjets. Evolutionary mission applications are presented for high specific impulse electric thruster systems. The current status of arcjet, ion, and magnetoplasmadynamic thrusters and their associated power processor technologies are summarized.

  20. Development of an Adaptive Multi-Method Algorithm for Automatic Picking of First Arrival Times: Application to Near Surface Seismic Data

    NASA Astrophysics Data System (ADS)

    Khalaf, A.; Camerlynck, C. M.; Schneider, A. C.; Florsch, N.

    2015-12-01

    Accurate picking of first arrival times plays an important role in many seismic studies, particularly in seismic tomography and reservoirs or aquifers monitoring. Many techniques have been developed for picking first arrivals automatically or semi-automatically, but most of them were developed for seismological purposes which does not attain the accuracy objectives due to the complexity of near surface structures, and to usual low signal-to-noise ratio. We propose a new adaptive algorithm for near surface data based on three picking methods, combining multi-nested windows (MNW), Higher Order Statistics (HOS), and Akaike Information Criterion (AIC). They exploit the benefits of integrating many properties, which reveal the presence of first arrivals, to provide an efficient and robust first arrivals picking. This strategy mimics the human first-break picking, where at the beginning the global trend is defined. Then the exact first-breaks are searched in the vicinity of the now defined trend. In a multistage algorithm, three successive phases are launched, where each of them characterize a specific signal property. Within each phase, the potential picks and their error range are automatically estimated, and then used sequentially as leader in the following phase picking. The accuracy and robustness of the implemented algorithm are successfully validated on synthetic and real data which have special challenges for automatic pickers. The comparison of resulting P-wave arrival times with those picked manually, and other algorithms of automatic picking, demonstrated the reliable performance of the new scheme under different noisy conditions. All parameters of our multi-method algorithm are auto-adaptive thanks to the integration in series of each sub-algorithm results in the flow. Hence, it is nearly a parameter-free algorithm, which is straightforward to implement and demands low computational resources.

  1. Implications of Bilingual Development for Specific Language Impairments in Turkey

    ERIC Educational Resources Information Center

    Topbas, Seyhun

    2011-01-01

    The potential impact of bilingualism on children's language development has emerged as a crucial concern for Turkey, but so far it has not been addressed from the point of view of language disorders. This short review examines the potential impact of bilingual language development for language impairments in Turkey, with special emphasis on the…

  2. Development of Algorithms and Error Analyses for the Short Baseline Lightning Detection and Ranging System

    NASA Technical Reports Server (NTRS)

    Starr, Stanley O.

    1998-01-01

    NASA, at the John F. Kennedy Space Center (KSC), developed and operates a unique high-precision lightning location system to provide lightning-related weather warnings. These warnings are used to stop lightning- sensitive operations such as space vehicle launches and ground operations where equipment and personnel are at risk. The data is provided to the Range Weather Operations (45th Weather Squadron, U.S. Air Force) where it is used with other meteorological data to issue weather advisories and warnings for Cape Canaveral Air Station and KSC operations. This system, called Lightning Detection and Ranging (LDAR), provides users with a graphical display in three dimensions of 66 megahertz radio frequency events generated by lightning processes. The locations of these events provide a sound basis for the prediction of lightning hazards. This document provides the basis for the design approach and data analysis for a system of radio frequency receivers to provide azimuth and elevation data for lightning pulses detected simultaneously by the LDAR system. The intent is for this direction-finding system to correct and augment the data provided by LDAR and, thereby, increase the rate of valid data and to correct or discard any invalid data. This document develops the necessary equations and algorithms, identifies sources of systematic errors and means to correct them, and analyzes the algorithms for random error. This data analysis approach is not found in the existing literature and was developed to facilitate the operation of this Short Baseline LDAR (SBLDAR). These algorithms may also be useful for other direction-finding systems using radio pulses or ultrasonic pulse data.

  3. Development of a Smart Release Algorithm for Mid-Air Separation of Parachute Test Articles

    NASA Technical Reports Server (NTRS)

    Moore, James W.

    2011-01-01

    The Crew Exploration Vehicle Parachute Assembly System (CPAS) project is currently developing an autonomous method to separate a capsule-shaped parachute test vehicle from an air-drop platform for use in the test program to develop and validate the parachute system for the Orion spacecraft. The CPAS project seeks to perform air-drop tests of an Orion-like boilerplate capsule. Delivery of the boilerplate capsule to the test condition has proven to be a critical and complicated task. In the current concept, the boilerplate vehicle is extracted from an aircraft on top of a Type V pallet and then separated from the pallet in mid-air. The attitude of the vehicles at separation is critical to avoiding re-contact and successfully deploying the boilerplate into a heatshield-down orientation. Neither the pallet nor the boilerplate has an active control system. However, the attitude of the mated vehicle as a function of time is somewhat predictable. CPAS engineers have designed an avionics system to monitor the attitude of the mated vehicle as it is extracted from the aircraft and command a release when the desired conditions are met. The algorithm includes contingency capabilities designed to release the test vehicle before undesirable orientations occur. The algorithm was verified with simulation and ground testing. The pre-flight development and testing is discussed and limitations of ground testing are noted. The CPAS project performed a series of three drop tests as a proof-of-concept of the release technique. These tests helped to refine the attitude instrumentation and software algorithm to be used on future tests. The drop tests are described in detail and the evolution of the release system with each test is described.

  4. Context-specific selection of algorithms for recursive feature tracking in endoscopic image using a new methodology.

    PubMed

    Selka, F; Nicolau, S; Agnus, V; Bessaid, A; Marescaux, J; Soler, L

    2015-03-01

    In minimally invasive surgery, the tracking of deformable tissue is a critical component for image-guided applications. Deformation of the tissue can be recovered by tracking features using tissue surface information (texture, color,...). Recent work in this field has shown success in acquiring tissue motion. However, the performance evaluation of detection and tracking algorithms on such images are still difficult and are not standardized. This is mainly due to the lack of ground truth data on real data. Moreover, in order to avoid supplementary techniques to remove outliers, no quantitative work has been undertaken to evaluate the benefit of a pre-process based on image filtering, which can improve feature tracking robustness. In this paper, we propose a methodology to validate detection and feature tracking algorithms, using a trick based on forward-backward tracking that provides an artificial ground truth data. We describe a clear and complete methodology to evaluate and compare different detection and tracking algorithms. In addition, we extend our framework to propose a strategy to identify the best combinations from a set of detector, tracker and pre-process algorithms, according to the live intra-operative data. Experimental results have been performed on in vivo datasets and show that pre-process can have a strong influence on tracking performance and that our strategy to find the best combinations is relevant for a reasonable computation cost.

  5. Performing target specific band reduction using artificial neural networks and assessment of its efficacy using various target detection algorithms

    NASA Astrophysics Data System (ADS)

    Yadav, Deepti; Arora, M. K.; Tiwari, K. C.; Ghosh, J. K.

    2016-04-01

    Hyperspectral imaging is a powerful tool in the field of remote sensing and has been used for many applications like mineral detection, detection of landmines, target detection etc. Major issues in target detection using HSI are spectral variability, noise, small size of the target, huge data dimensions, high computation cost, complex backgrounds etc. Many of the popular detection algorithms do not work for difficult targets like small, camouflaged etc. and may result in high false alarms. Thus, target/background discrimination is a key issue and therefore analyzing target's behaviour in realistic environments is crucial for the accurate interpretation of hyperspectral imagery. Use of standard libraries for studying target's spectral behaviour has limitation that targets are measured in different environmental conditions than application. This study uses the spectral data of the same target which is used during collection of the HSI image. This paper analyze spectrums of targets in a way that each target can be spectrally distinguished from a mixture of spectral data. Artificial neural network (ANN) has been used to identify the spectral range for reducing data and further its efficacy for improving target detection is verified. The results of ANN proposes discriminating band range for targets; these ranges were further used to perform target detection using four popular spectral matching target detection algorithm. Further, the results of algorithms were analyzed using ROC curves to evaluate the effectiveness of the ranges suggested by ANN over full spectrum for detection of desired targets. In addition, comparative assessment of algorithms is also performed using ROC.

  6. Developing a Direct Search Algorithm for Solving the Capacitated Open Vehicle Routing Problem

    NASA Astrophysics Data System (ADS)

    Simbolon, Hotman

    2011-06-01

    In open vehicle routing problems, the vehicles are not required to return to the depot after completing service. In this paper, we present the first exact optimization algorithm for the open version of the well-known capacitated vehicle routing problem (CVRP). The strategy of releasing nonbasic variables from their bounds, combined with the "active constraint" method and the notion of superbasics, has been developed for efficiently requirements; this strategy is used to force the appropriate non-integer basic variables to move to their neighborhood integer points. A study of criteria for choosing a nonbasic variable to work with in the integerizing strategy has also been made.

  7. Multidisciplinary Design, Analysis, and Optimization Tool Development using a Genetic Algorithm

    NASA Technical Reports Server (NTRS)

    Pak, Chan-gi; Li, Wesley

    2008-01-01

    Multidisciplinary design, analysis, and optimization using a genetic algorithm is being developed at the National Aeronautics and Space A dministration Dryden Flight Research Center to automate analysis and design process by leveraging existing tools such as NASTRAN, ZAERO a nd CFD codes to enable true multidisciplinary optimization in the pr eliminary design stage of subsonic, transonic, supersonic, and hypers onic aircraft. This is a promising technology, but faces many challe nges in large-scale, real-world application. This paper describes cur rent approaches, recent results, and challenges for MDAO as demonstr ated by our experience with the Ikhana fire pod design.

  8. Multidisciplinary Design, Analysis, and Optimization Tool Development Using a Genetic Algorithm

    NASA Technical Reports Server (NTRS)

    Pak, Chan-gi; Li, Wesley

    2009-01-01

    Multidisciplinary design, analysis, and optimization using a genetic algorithm is being developed at the National Aeronautics and Space Administration Dryden Flight Research Center (Edwards, California) to automate analysis and design process by leveraging existing tools to enable true multidisciplinary optimization in the preliminary design stage of subsonic, transonic, supersonic, and hypersonic aircraft. This is a promising technology, but faces many challenges in large-scale, real-world application. This report describes current approaches, recent results, and challenges for multidisciplinary design, analysis, and optimization as demonstrated by experience with the Ikhana fire pod design.!

  9. Development and evaluation of a predictive algorithm for telerobotic task complexity

    NASA Technical Reports Server (NTRS)

    Gernhardt, M. L.; Hunter, R. C.; Hedgecock, J. C.; Stephenson, A. G.

    1993-01-01

    There is a wide range of complexity in the various telerobotic servicing tasks performed in subsea, space, and hazardous material handling environments. Experience with telerobotic servicing has evolved into a knowledge base used to design tasks to be 'telerobot friendly.' This knowledge base generally resides in a small group of people. Written documentation and requirements are limited in conveying this knowledge base to serviceable equipment designers and are subject to misinterpretation. A mathematical model of task complexity based on measurable task parameters and telerobot performance characteristics would be a valuable tool to designers and operational planners. Oceaneering Space Systems and TRW have performed an independent research and development project to develop such a tool for telerobotic orbital replacement unit (ORU) exchange. This algorithm was developed to predict an ORU exchange degree of difficulty rating (based on the Cooper-Harper rating used to assess piloted operations). It is based on measurable parameters of the ORU, attachment receptacle and quantifiable telerobotic performance characteristics (e.g., link length, joint ranges, positional accuracy, tool lengths, number of cameras, and locations). The resulting algorithm can be used to predict task complexity as the ORU parameters, receptacle parameters, and telerobotic characteristics are varied.

  10. The development of power specific redlines for SSME safety monitoring

    NASA Technical Reports Server (NTRS)

    Maul, William A.; Bosch, Claudia M.

    1989-01-01

    Over the past several years, there has been an increased awareness in the necessity for rocket engine health monitoring because of the cost and complexity of present and future systems. A current rocket engine system, the Space Shuttle Main Engine (SSME), combines a limited redline system with closed-loop control of the engine's thrust level and mixture ratio. Despite these features, 27 tests of the SSME have resulted in major incidents. A SSME transient model was used to examine the effect of variations in high pressure turbopump performance on various engine parameters. Based on analysis of the responses, several new parameters are proposed for further investigation as power-level specific redlines.

  11. The development of power specific redlines for SSME safety monitoring

    NASA Technical Reports Server (NTRS)

    Maul, William A.; Bosch, Claudia M.

    1989-01-01

    Over the past several years, there has been an increased awareness in the necessity for rocket engine health monitoring because of the cost and complexity of present and future systems. A current rocket engine system, the Space Shuttle Main Engine (SSME), combines a limited redline system with closed-loop control of the engine's thrust level and mixture ratio. Despite these features, 27 tests of the SSME have resulted in major incidents. An SSME transient model was used to examine the effect of variations in high pressure turbopump performance on various engine parameters. Based on analysis of the responses, several new parameters are proposed for further investigation as power-level specific redlines.

  12. Development of ocean color algorithms for estimating chlorophyll-a concentrations and inherent optical properties using gene expression programming (GEP).

    PubMed

    Chang, Chih-Hua

    2015-03-01

    This paper proposes new inversion algorithms for the estimation of Chlorophyll-a concentration (Chla) and the ocean's inherent optical properties (IOPs) from the measurement of remote sensing reflectance (Rrs). With in situ data from the NASA bio-optical marine algorithm data set (NOMAD), inversion algorithms were developed by the novel gene expression programming (GEP) approach, which creates, manipulates and selects the most appropriate tree-structured functions based on evolutionary computing. The limitations and validity of the proposed algorithms are evaluated by simulated Rrs spectra with respect to NOMAD, and a closure test for IOPs obtained at a single reference wavelength. The application of GEP-derived algorithms is validated against in situ, synthetic and satellite match-up data sets compiled by NASA and the International Ocean Color Coordinate Group (IOCCG). The new algorithms are able to provide Chla and IOPs retrievals to those derived by other state-of-the-art regression approaches and obtained with the semi- and quasi-analytical algorithms, respectively. In practice, there are no significant differences between GEP, support vector regression, and multilayer perceptron model in terms of the overall performance. The GEP-derived algorithms are successfully applied in processing the images taken by the Sea Wide Field-of-view Sensor (SeaWiFS), generate Chla and IOPs maps which show better details of developing algal blooms, and give more information on the distribution of water constituents between different water bodies. PMID:25836776

  13. An algorithm for hyperspectral remote sensing of aerosols: 1. Development of theoretical framework

    NASA Astrophysics Data System (ADS)

    Hou, Weizhen; Wang, Jun; Xu, Xiaoguang; Reid, Jeffrey S.; Han, Dong

    2016-07-01

    This paper describes the first part of a series of investigations to develop algorithms for simultaneous retrieval of aerosol parameters and surface reflectance from a newly developed hyperspectral instrument, the GEOstationary Trace gas and Aerosol Sensor Optimization (GEO-TASO), by taking full advantage of available hyperspectral measurement information in the visible bands. We describe the theoretical framework of an inversion algorithm for the hyperspectral remote sensing of the aerosol optical properties, in which major principal components (PCs) for surface reflectance is assumed known, and the spectrally dependent aerosol refractive indices are assumed to follow a power-law approximation with four unknown parameters (two for real and two for imaginary part of refractive index). New capabilities for computing the Jacobians of four Stokes parameters of reflected solar radiation at the top of the atmosphere with respect to these unknown aerosol parameters and the weighting coefficients for each PC of surface reflectance are added into the UNified Linearized Vector Radiative Transfer Model (UNL-VRTM), which in turn facilitates the optimization in the inversion process. Theoretical derivations of the formulas for these new capabilities are provided, and the analytical solutions of Jacobians are validated against the finite-difference calculations with relative error less than 0.2%. Finally, self-consistency check of the inversion algorithm is conducted for the idealized green-vegetation and rangeland surfaces that were spectrally characterized by the U.S. Geological Survey digital spectral library. It shows that the first six PCs can yield the reconstruction of spectral surface reflectance with errors less than 1%. Assuming that aerosol properties can be accurately characterized, the inversion yields a retrieval of hyperspectral surface reflectance with an uncertainty of 2% (and root-mean-square error of less than 0.003), which suggests self-consistency in the

  14. NDE Process Development Specification for SRB Composite Nose Cap

    NASA Technical Reports Server (NTRS)

    Suits, M.

    1999-01-01

    The Shuttle Upgrade program is a continuing improvement process to enable the Space Shuttle to be an effective space transportation vehicle for the next few decades. The Solid Rocket Booster (SRB), as a component of that system, is currently undergoing such an improvement. Advanced materials, such as composites, have given us a chance to improve performance and to reduce weight. The SRB Composite Nose Cap (CNC) program aims to replace the current aluminum nose cap, which is coated with a Thermal Protection System and poses a possible debris hazard, with a lighter, stronger, CNC. For the next 2 years, this program will evaluate the design, material selection, properties, and verification of the CNC. This particular process specification cites the methods and techniques for verifying the integrity of such a nose cap with nondestructive evaluation.

  15. Development of a specific radioimmunoassay for cortisol 17-butyrate

    SciTech Connect

    Smith, G.N.; Lee, Y.F.; Bu'Lock, D.E.; August, P.; Anderson, D.C.

    1983-07-01

    We describe the development and validation of an assay for cortisol 17-butyrate in blood in which there is no significant cross reaction with endogenous corticosteroids at levels encountered normally in man. Preliminary data on blood levels of the drug in absorption studies are presented.

  16. Theories in Developing Oral Communication for Specific Learner Group

    ERIC Educational Resources Information Center

    Hadi, Marham Jupri

    2016-01-01

    The current article presents some key theories most relevant to the development of oral communication skills in an Indonesian senior high school. Critical analysis on the learners' background is employed to figure out their strengths and weaknesses. The brief overview of the learning context and learners' characteristic are used to identify which…

  17. Development of an algorithm to provide awareness in choosing study designs for inclusion in systematic reviews of healthcare interventions: a method study

    PubMed Central

    Peinemann, Frank; Kleijnen, Jos

    2015-01-01

    Objectives To develop an algorithm that aims to provide guidance and awareness for choosing multiple study designs in systematic reviews of healthcare interventions. Design Method study: (1) To summarise the literature base on the topic. (2) To apply the integration of various study types in systematic reviews. (3) To devise decision points and outline a pragmatic decision tree. (4) To check the plausibility of the algorithm by backtracking its pathways in four systematic reviews. Results (1) The results of our systematic review of the published literature have already been published. (2) We recaptured the experience from our four previously conducted systematic reviews that required the integration of various study types. (3) We chose length of follow-up (long, short), frequency of events (rare, frequent) and types of outcome as decision points (death, disease, discomfort, disability, dissatisfaction) and aligned the study design labels according to the Cochrane Handbook. We also considered practical or ethical concerns, and the problem of unavailable high-quality evidence. While applying the algorithm, disease-specific circumstances and aims of interventions should be considered. (4) We confirmed the plausibility of the pathways of the algorithm. Conclusions We propose that the algorithm can assist to bring seminal features of a systematic review with multiple study designs to the attention of anyone who is planning to conduct a systematic review. It aims to increase awareness and we think that it may reduce the time burden on review authors and may contribute to the production of a higher quality review. PMID:26289450

  18. Millimeter-wave Imaging Radiometer (MIR) data processing and development of water vapor retrieval algorithms

    NASA Technical Reports Server (NTRS)

    Chang, L. Aron

    1995-01-01

    This document describes the progress of the task of the Millimeter-wave Imaging Radiometer (MIR) data processing and the development of water vapor retrieval algorithms, for the second six-month performing period. Aircraft MIR data from two 1995 field experiments were collected and processed with a revised data processing software. Two revised versions of water vapor retrieval algorithm were developed, one for the execution of retrieval on a supercomputer platform, and one for using pressure as the vertical coordinate. Two implementations of incorporating products from other sensors into the water vapor retrieval system, one from the Special Sensor Microwave Imager (SSM/I), the other from the High-resolution Interferometer Sounder (HIS). Water vapor retrievals were performed for both airborne MIR data and spaceborne SSM/T-2 data, during field experiments of TOGA/COARE, CAMEX-1, and CAMEX-2. The climatology of water vapor during TOGA/COARE was examined by SSM/T-2 soundings and conventional rawinsonde.

  19. Developing algorithms for predicting protein-protein interactions of homology modeled proteins.

    SciTech Connect

    Martin, Shawn Bryan; Sale, Kenneth L.; Faulon, Jean-Loup Michel; Roe, Diana C.

    2006-01-01

    The goal of this project was to examine the protein-protein docking problem, especially as it relates to homology-based structures, identify the key bottlenecks in current software tools, and evaluate and prototype new algorithms that may be developed to improve these bottlenecks. This report describes the current challenges in the protein-protein docking problem: correctly predicting the binding site for the protein-protein interaction and correctly placing the sidechains. Two different and complementary approaches are taken that can help with the protein-protein docking problem. The first approach is to predict interaction sites prior to docking, and uses bioinformatics studies of protein-protein interactions to predict theses interaction site. The second approach is to improve validation of predicted complexes after docking, and uses an improved scoring function for evaluating proposed docked poses, incorporating a solvation term. This scoring function demonstrates significant improvement over current state-of-the art functions. Initial studies on both these approaches are promising, and argue for full development of these algorithms.

  20. Development of optimization model for sputtering process parameter based on gravitational search algorithm

    NASA Astrophysics Data System (ADS)

    Norlina, M. S.; Diyana, M. S. Nor; Mazidah, P.; Rusop, M.

    2016-07-01

    In the RF magnetron sputtering process, the desirable layer properties are largely influenced by the process parameters and conditions. If the quality of the thin film has not reached up to its intended level, the experiments have to be repeated until the desirable quality has been met. This research is proposing Gravitational Search Algorithm (GSA) as the optimization model to reduce the time and cost to be spent in the thin film fabrication. The optimization model's engine has been developed using Java. The model is developed based on GSA concept, which is inspired by the Newtonian laws of gravity and motion. In this research, the model is expected to optimize four deposition parameters which are RF power, deposition time, oxygen flow rate and substrate temperature. The results have turned out to be promising and it could be concluded that the performance of the model is satisfying in this parameter optimization problem. Future work could compare GSA with other nature based algorithms and test them with various set of data.

  1. Developing a Moving-Solid Algorithm for Simulating Tsunamis Induced by Rock Sliding

    NASA Astrophysics Data System (ADS)

    Chuang, M.; Wu, T.; Huang, C.; Wang, C.; Chu, C.; Chen, M.

    2012-12-01

    The landslide generated tsunami is one of the most devastating nature hazards. However, the involvement of the moving obstacle and dynamic free-surface movement makes the numerical simulation a difficult task. To describe the fluid motion, we use modified two-step projection method to decouple the velocity and pressure fields with 3D LES turbulent model. The free-surface movement is tracked by volume of fluid (VOF) method (Wu, 2004). To describe the effect from the moving obstacle on the fluid, a newly developed moving-solid algorithm (MSA) is developed. We combine the ideas from immersed boundary method (IBM) and partial-cell treatment (PCT) for specifying the contacting speed on the solid face and for presenting the obstacle blocking effect, respectively. By using the concept of IBM, the cell-center and cell-face velocities can be specified arbitrarily. And because we move the solid obstacle on a fixed grid, the boundary of the solid seldom coincides with the cell faces, which makes it inappropriate to assign the solid boundary velocity to the cell faces. To overcome this problem, the PCT is adopted. Using this algorithm, the solid surface is conceptually coincided with the cell faces, and the cell face velocity is able to be specified as the obstacle velocity. The advantage of using this algorithm is obtaining the stable pressure field which is extremely important for coupling with a force-balancing model which describes the solid motion. This model is therefore able to simulate incompressible high-speed fluid motion. In order to describe the solid motion, the DEM (Discrete Element Method) is adopted. The new-time solid movement can be predicted and divided into translation and rotation based on the Newton's equations and Euler's equations respectively. The detail of the moving-solid algorithm is presented in this paper. This model is then applied to studying the rock-slide generated tsunami. The results are validated with the laboratory data (Liu and Wu, 2005

  2. Development of Gis Tool for the Solution of Minimum Spanning Tree Problem using Prim's Algorithm

    NASA Astrophysics Data System (ADS)

    Dutta, S.; Patra, D.; Shankar, H.; Alok Verma, P.

    2014-11-01

    minimum spanning tree (MST) of a connected, undirected and weighted network is a tree of that network consisting of all its nodes and the sum of weights of all its edges is minimum among all such possible spanning trees of the same network. In this study, we have developed a new GIS tool using most commonly known rudimentary algorithm called Prim's algorithm to construct the minimum spanning tree of a connected, undirected and weighted road network. This algorithm is based on the weight (adjacency) matrix of a weighted network and helps to solve complex network MST problem easily, efficiently and effectively. The selection of the appropriate algorithm is very essential otherwise it will be very hard to get an optimal result. In case of Road Transportation Network, it is very essential to find the optimal results by considering all the necessary points based on cost factor (time or distance). This paper is based on solving the Minimum Spanning Tree (MST) problem of a road network by finding it's minimum span by considering all the important network junction point. GIS technology is usually used to solve the network related problems like the optimal path problem, travelling salesman problem, vehicle routing problems, location-allocation problems etc. Therefore, in this study we have developed a customized GIS tool using Python script in ArcGIS software for the solution of MST problem for a Road Transportation Network of Dehradun city by considering distance and time as the impedance (cost) factors. It has a number of advantages like the users do not need a greater knowledge of the subject as the tool is user-friendly and that allows to access information varied and adapted the needs of the users. This GIS tool for MST can be applied for a nationwide plan called Prime Minister Gram Sadak Yojana in India to provide optimal all weather road connectivity to unconnected villages (points). This tool is also useful for constructing highways or railways spanning several

  3. Simple Algorithms for Distributed Leader Election in Anonymous Synchronous Rings and Complete Networks Inspired by Neural Development in Fruit Flies.

    PubMed

    Xu, Lei; Jeavons, Peter

    2015-11-01

    Leader election in anonymous rings and complete networks is a very practical problem in distributed computing. Previous algorithms for this problem are generally designed for a classical message passing model where complex messages are exchanged. However, the need to send and receive complex messages makes such algorithms less practical for some real applications. We present some simple synchronous algorithms for distributed leader election in anonymous rings and complete networks that are inspired by the development of the neural system of the fruit fly. Our leader election algorithms all assume that only one-bit messages are broadcast by nodes in the network and processors are only able to distinguish between silence and the arrival of one or more messages. These restrictions allow implementations to use a simpler message-passing architecture. Even with these harsh restrictions our algorithms are shown to achieve good time and message complexity both analytically and experimentally.

  4. Project management plan, double-shell tank system specification development

    SciTech Connect

    Conrads, T.J.

    1998-01-26

    The Project Hanford Management Contract (PHMC) members have been tasked by the US Department of Energy (DOE) to support removal of wastes from the Hanford Site 200 Area tanks in two phases. The schedule for these phases allows focusing on requirements for the first phase of providing feed to the privatized vitrification plants. The Tank Waste Retrieval Division near-term goal is to focus on the activities to support Phase 1. These include developing an integrated (technical, schedule, and cost) baseline and, with regard to private contractors, establishing interface agreements, constructing infrastructure systems, retrieving and delivering waste feed, and accepting immobilized waste products for interim onsite storage. This document describes the process for developing an approach to designing a system for retrieving waste from double-shell tanks. It includes a schedule and cost account for the work breakdown structure task.

  5. Development and Implementation of a Hardware In-the-Loop Test Bed for Unmanned Aerial Vehicle Control Algorithms

    NASA Technical Reports Server (NTRS)

    Nyangweso, Emmanuel; Bole, Brian

    2014-01-01

    Successful prediction and management of battery life using prognostic algorithms through ground and flight tests is important for performance evaluation of electrical systems. This paper details the design of test beds suitable for replicating loading profiles that would be encountered in deployed electrical systems. The test bed data will be used to develop and validate prognostic algorithms for predicting battery discharge time and battery failure time. Online battery prognostic algorithms will enable health management strategies. The platform used for algorithm demonstration is the EDGE 540T electric unmanned aerial vehicle (UAV). The fully designed test beds developed and detailed in this paper can be used to conduct battery life tests by controlling current and recording voltage and temperature to develop a model that makes a prediction of end-of-charge and end-of-life of the system based on rapid state of health (SOH) assessment.

  6. Development of region processing algorithm for HSTAMIDS: status and field test results

    NASA Astrophysics Data System (ADS)

    Ngan, Peter; Burke, Sean; Cresci, Roger; Wilson, Joseph N.; Gader, Paul; Ho, K. C.; Bartosz, Elizabeth; Duvoisin, Herbert

    2007-04-01

    The Region Processing Algorithm (RPA) has been developed by the Office of the Army Humanitarian Demining Research and Development (HD R&D) Program as part of improvements for the AN/PSS-14. The effort was a collaboration between the HD R&D Program, L-3 Communication CyTerra Corporation, University of Florida, Duke University and University of Missouri. RPA has been integrated into and implemented in a real-time AN/PSS-14. The subject unit was used to collect data and tested for its performance at three Army test sites within the United States of America. This paper describes the status of the technology and its recent test results.

  7. Ocean observations with EOS/MODIS: Algorithm development and post launch studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1995-01-01

    Several significant accomplishments were made during the present reporting period. (1) Initial simulations to understand the applicability of the MODerate Resolution Imaging Spectrometer (MODIS) 1380 nm band for removing the effects of stratospheric aerosols and thin cirrus clouds were completed using a model for an aged volcanic aerosol. The results suggest that very simple procedures requiring no a priori knowledge of the optical properties of the stratospheric aerosol may be as effective as complex procedures requiring full knowledge of the aerosol properties, except the concentration which is estimated from the reflectance at 1380 nm. The limitations of this conclusion will be examined in the next reporting period; (2) The lookup tables employed in the implementation of the atmospheric correction algorithm have been modified in several ways intended to improve the accuracy and/or speed of processing. These have been delivered to R. Evans for implementation into the MODIS prototype processing algorithm for testing; (3) A method was developed for removal of the effects of the O2 'A' absorption band from SeaWiFS band 7 (745-785 nm). This is important in that SeaWiFS imagery will be used as a test data set for the MODIS atmospheric correction algorithm over the oceans; and (4) Construction of a radiometer, and associated deployment boom, for studying the spectral reflectance of oceanic whitecaps at sea was completed. The system was successfully tested on a cruise off Hawaii on which whitecaps were plentiful during October-November. This data set is now under analysis.

  8. Development of a memetic clustering algorithm for optimal spectral histology: application to FTIR images of normal human colon.

    PubMed

    Farah, Ihsen; Nguyen, Thi Nguyet Que; Groh, Audrey; Guenot, Dominique; Jeannesson, Pierre; Gobinet, Cyril

    2016-05-23

    The coupling between Fourier-transform infrared (FTIR) imaging and unsupervised classification is effective in revealing the different structures of human tissues based on their specific biomolecular IR signatures; thus the spectral histology of the studied samples is achieved. However, the most widely applied clustering methods in spectral histology are local search algorithms, which converge to a local optimum, depending on initialization. Multiple runs of the techniques estimate multiple different solutions. Here, we propose a memetic algorithm, based on a genetic algorithm and a k-means clustering refinement, to perform optimal clustering. In addition, this approach was applied to the acquired FTIR images of normal human colon tissues originating from five patients. The results show the efficiency of the proposed memetic algorithm to achieve the optimal spectral histology of these samples, contrary to k-means. PMID:27110605

  9. The Development and Application of a Quantitative Peptide Microarray Based Approach to Protein Interaction Domain Specificity Space*

    PubMed Central

    Engelmann, Brett W.; Kim, Yohan; Wang, Miaoyan; Peters, Bjoern; Rock, Ronald S.; Nash, Piers D.

    2014-01-01

    Protein interaction domain (PID) linear peptide motif interactions direct diverse cellular processes in a specific and coordinated fashion. PID specificity, or the interaction selectivity derived from affinity preferences between possible PID-peptide pairs is the basis of this ability. Here, we develop an integrated experimental and computational cellulose peptide conjugate microarray (CPCMA) based approach for the high throughput analysis of PID specificity that provides unprecedented quantitative resolution and reproducibility. As a test system, we quantify the specificity preferences of four Src Homology 2 domains and 124 physiological phosphopeptides to produce a novel quantitative interactome. The quantitative data set covers a broad affinity range, is highly precise, and agrees well with orthogonal biophysical validation, in vivo interactions, and peptide library trained algorithm predictions. In contrast to preceding approaches, the CPCMAs proved capable of confidently assigning interactions into affinity categories, resolving the subtle affinity contributions of residue correlations, and yielded predictive peptide motif affinity matrices. Unique CPCMA enabled modes of systems level analysis reveal a physiological interactome with expected node degree value decreasing as a function of affinity, resulting in minimal high affinity binding overlap between domains; uncover that Src Homology 2 domains bind ligands with a similar average affinity yet strikingly different levels of promiscuity and binding dynamic range; and parse with unprecedented quantitative resolution contextual factors directing specificity. The CPCMA platform promises broad application within the fields of PID specificity, synthetic biology, specificity focused drug design, and network biology. PMID:25135669

  10. Toward the development of podocyte-specific drugs

    PubMed Central

    Reiser, Jochen; Gupta, Vineet; Kistler, Andreas D.

    2014-01-01

    Most kidney diseases that ultimately lead to end-stage renal failure originate within the glomerulus and are associated with proteinuria. Treatment options are unspecific and offer partial cures at best because available therapies do not primarily treat glomerular cells but rather act systemically and thus cause many side effects. Most glomerulopathies directly stem from injury to podocytes, cells that have a key role in the maintenance of the glomerular filter. Thus, these cells constitute an obvious and promising target for the development of novel kidney-protective drugs. During the last decade, enormous advances have been made in the understanding of podocyte structure and function. A number of pathways that are altered during glomerular diseases may be targeted by novel small- and large-molecule drugs as well as biologicals that have been identified in nephrology and other areas of drug development. Cultured podocytes provide a valuable model for high-throughput drug screening assays. Furthermore, podocytes have been shown to possess many features that make them particularly good target cells for renal protection. This mini-review discusses some of the most recent promising data related to potential drug therapy for proteinuria and kidney disease through direct podocyte targeting. PMID:20130528

  11. Northwest Energy Efficient Manufactured Housing Program Specification Development

    SciTech Connect

    Hewes, T.; Peeks, B.

    2013-02-01

    The Hood River Passive Project was developed by Root Design Build of Hood River Oregon using the Passive House Planning Package (PHPP) to meet all of the requirements for certification under the European Passive House standards. The Passive House design approach has been gaining momentum among residential designers for custom homes and BEopt modeling indicates that these designs may actually exceed the goal of the U.S. Department of Energy's (DOE) Building America program to reduce home energy use by 30%-50% (compared to 2009 energy codes for new homes). This report documents the short term test results of the Shift House and compares the results of PHPP and BEopt modeling of the project.

  12. Sex-Specific Placental Responses in Fetal Development

    PubMed Central

    2015-01-01

    The placenta is an ephemeral but critical organ for the survival of all eutherian mammals and marsupials. It is the primary messenger system between the mother and fetus, where communicational signals, nutrients, waste, gases, and extrinsic factors are exchanged. Although the placenta may buffer the fetus from various environmental insults, placental dysfunction might also contribute to detrimental developmental origins of adult health and disease effects. The placenta of one sex over the other might possess greater ability to respond and buffer against environmental insults. Given the potential role of the placenta in effecting the lifetime health of the offspring, it is not surprising that there has been a resurging interest in this organ, including the Human Placental Project launched by the National Institutes of Child Health and Human Development. In this review, we will compare embryological development of the laboratory mouse and human chorioallantoic placentae. Next, evidence that various species, including humans, exhibit normal sex-dependent structural and functional placental differences will be examined followed by how in utero environmental changes (nutritional state, stress, and exposure to environmental chemicals) might interact with fetal sex to affect this organ. Recent data also suggest that paternal state impacts placental function in a sex-dependent manner. The research to date linking placental maladaptive responses and later developmental origins of adult health and disease effects will be explored. Finally, we will focus on how sex chromosomes and epimutations may contribute to sex-dependent differences in placental function, the unanswered questions, and future directions that warrant further consideration. PMID:26241064

  13. A Prototype Hail Detection Algorithm and Hail Climatology Developed with the Advanced Microwave Sounding Unit (AMSU)

    NASA Technical Reports Server (NTRS)

    Ferraro, Ralph; Beauchamp, James; Cecil, Dan; Heymsfeld, Gerald

    2015-01-01

    In previous studies published in the open literature, a strong relationship between the occurrence of hail and the microwave brightness temperatures (primarily at 37 and 85 GHz) was documented. These studies were performed with the Nimbus-7 SMMR, the TRMM Microwave Imager (TMI) and most recently, the Aqua AMSR-E sensor. This lead to climatologies of hail frequency from TMI and AMSR-E, however, limitations include geographical domain of the TMI sensor (35 S to 35 N) and the overpass time of the Aqua satellite (130 am/pm local time), both of which reduce an accurate mapping of hail events over the global domain and the full diurnal cycle. Nonetheless, these studies presented exciting, new applications for passive microwave sensors. Since 1998, NOAA and EUMETSAT have been operating the AMSU-A/B and the MHS on several operational satellites: NOAA-15 through NOAA-19; MetOp-A and -B. With multiple satellites in operation since 2000, the AMSU/MHS sensors provide near global coverage every 4 hours, thus, offering a much larger time and temporal sampling than TRMM or AMSR-E. With similar observation frequencies near 30 and 85 GHz and additionally three at the 183 GHz water vapor band, the potential to detect strong convection associated with severe storms on a more comprehensive time and space scale exists. In this study, we develop a prototype AMSU-based hail detection algorithm through the use of collocated satellite and surface hail reports over the continental U.S. for a 12-year period (2000-2011). Compared with the surface observations, the algorithm detects approximately 40 percent of hail occurrences. The simple threshold algorithm is then used to generate a hail climatology that is based on all available AMSU observations during 2000-11 that is stratified in several ways, including total hail occurrence by month (March through September), total annual, and over the diurnal cycle. Independent comparisons are made compared to similar data sets derived from other

  14. Methodologies for Development of Patient Specific Bone Models from Human Body CT Scans

    NASA Astrophysics Data System (ADS)

    Chougule, Vikas Narayan; Mulay, Arati Vinayak; Ahuja, Bharatkumar Bhagatraj

    2016-06-01

    This work deals with development of algorithm for physical replication of patient specific human bone and construction of corresponding implants/inserts RP models by using Reverse Engineering approach from non-invasive medical images for surgical purpose. In medical field, the volumetric data i.e. voxel and triangular facet based models are primarily used for bio-modelling and visualization, which requires huge memory space. On the other side, recent advances in Computer Aided Design (CAD) technology provides additional facilities/functions for design, prototyping and manufacturing of any object having freeform surfaces based on boundary representation techniques. This work presents a process to physical replication of 3D rapid prototyping (RP) physical models of human bone from various CAD modeling techniques developed by using 3D point cloud data which is obtained from non-invasive CT/MRI scans in DICOM 3.0 format. This point cloud data is used for construction of 3D CAD model by fitting B-spline curves through these points and then fitting surface between these curve networks by using swept blend techniques. This process also can be achieved by generating the triangular mesh directly from 3D point cloud data without developing any surface model using any commercial CAD software. The generated STL file from 3D point cloud data is used as a basic input for RP process. The Delaunay tetrahedralization approach is used to process the 3D point cloud data to obtain STL file. CT scan data of Metacarpus (human bone) is used as the case study for the generation of the 3D RP model. A 3D physical model of the human bone is generated on rapid prototyping machine and its virtual reality model is presented for visualization. The generated CAD model by different techniques is compared for the accuracy and reliability. The results of this research work are assessed for clinical reliability in replication of human bone in medical field.

  15. Microphysical particle properties derived from inversion algorithms developed in the framework of EARLINET

    NASA Astrophysics Data System (ADS)

    Müller, D.; Böckmann, C.; Kolgotin, A.; Schneidenbach, L.; Chemyakin, E.; Rosemann, J.; Znak, P.; Romanov, A.

    2015-12-01

    We present a summary on the current status of two inversion algorithms that are used in EARLINET for the inversion of data collected with EARLINET multiwavelength Raman lidars. These instruments measure backscatter coefficients at 355, 532, and 1064 nm, and extinction coefficients at 355 and 532 nm. Development of these two algorithms started in 2000 when EARLINET was founded. The algorithms are based on manually controlled inversion of optical data which allows for detailed sensitivity studies and thus provides us with comparably high quality of the derived data products. The algorithms allow us to derive particle effective radius, and volume and surface-area concentration with comparably high confidence. The retrieval of the real and imaginary parts of the complex refractive index still is a challenge in view of the accuracy required for these parameters in climate change studies in which light-absorption needs to be known with high accuracy. Single-scattering albedo can be computed from the retrieved microphysical parameters and allows us to categorize aerosols into high and low absorbing aerosols. We discuss the current status of these manually operated algorithms, the potentially achievable accuracy of data products, and the goals for future work on the basis of a few exemplary simulations with synthetic optical data. The optical data used in our study cover a range of Ångström exponents and extinction-to-backscatter (lidar) ratios that are found from lidar measurements of various aerosol types. We also tested aerosol scenarios that are considered highly unlikely, e.g., the lidar ratios fall outside the commonly accepted range of values measured with Raman lidar, even though the underlying microphysical particle properties are not uncommon. The goal of this part of the study is to test robustness of the algorithms toward their ability to identify aerosol types that have not been measured so far, but cannot be ruled out based on our current knowledge of

  16. Description of ALARMA: the alarm algorithm developed for the Nuclear Car Wash

    SciTech Connect

    Luu, T; Biltoft, P; Church, J; Descalle, M; Hall, J; Manatt, D; Mauger, J; Norman, E; Petersen, D; Pruet, J; Prussin, S; Slaughter, D

    2006-11-28

    The goal of any alarm algorithm should be that it provide the necessary tools to derive confidence limits on whether the existence of fissile materials is present in cargo containers. It should be able to extract these limits from (usually) noisy and/or weak data while maintaining a false alarm rate (FAR) that is economically suitable for port operations. It should also be able to perform its analysis within a reasonably short amount of time (i.e. {approx} seconds). To achieve this, it is essential that the algorithm be able to identify and subtract any interference signature that might otherwise be confused with a fissile signature. Lastly, the algorithm itself should be user-intuitive and user-friendly so that port operators with little or no experience with detection algorithms may use it with relative ease. In support of the Nuclear Car Wash project at Lawrence Livermore Laboratory, we have developed an alarm algorithm that satisfies the above requirements. The description of the this alarm algorithm, dubbed ALARMA, is the purpose of this technical report. The experimental setup of the nuclear car wash has been well documented [1, 2, 3]. The presence of fissile materials is inferred by examining the {beta}-delayed gamma spectrum induced after a brief neutron irradiation of cargo, particularly in the high-energy region above approximately 2.5 MeV. In this region naturally occurring gamma rays are virtually non-existent. Thermal-neutron induced fission of {sup 235}U and {sup 239}P, on the other hand, leaves a unique {beta}-delayed spectrum [4]. This spectrum comes from decays of fission products having half-lives as large as 30 seconds, many of which have high Q-values. Since high-energy photons penetrate matter more freely, it is natural to look for unique fissile signatures in this energy region after neutron irradiation. The goal of this interrogation procedure is a 95% success rate of detection of as little as 5 kilograms of fissile material while retaining

  17. White Light Modeling, Algorithm Development, and Validation on the Micro-arcsecond Metrology Testbed

    NASA Technical Reports Server (NTRS)

    Milman, Mark H.; Regher, Martin; Shen, Tsae Pyng

    2004-01-01

    The Space Interferometry Mission (SIM) scheduled for launch in early 2010, is an optical interferometer that will perform narrow angle and global wide angle astrometry with unprecedented accuracy, providing differential position accuracies of 1uas, and 4uas global accuracies in position, proper motion and parallax. The astrometric observations of the SIM instrument are performed via delay measurements provided by three Michelson-type, white light interferometers. Two 'guide' interferometers acquire fringes on bright guide stars in order to make highly precise measurements of variations in spacecraft attitude, while the third interferometer performs the science measurement. SIM derives its performance from a combination of precise fringe measurements of the interfered starlight (a few ten-thousandths of a wave) and very precise (tens of picometers) relative distance measurements made between a set of fiducials. The focus of the present paper is on the development and analysis of algorithms for accurate white light estimation, and on validating some of these algorithms on the MicroArcsecond Testbed.

  18. Path optimization by a variational reaction coordinate method. I. Development of formalism and algorithms

    SciTech Connect

    Birkholz, Adam B.; Schlegel, H. Bernhard

    2015-12-28

    The development of algorithms to optimize reaction pathways between reactants and products is an active area of study. Existing algorithms typically describe the path as a discrete series of images (chain of states) which are moved downhill toward the path, using various reparameterization schemes, constraints, or fictitious forces to maintain a uniform description of the reaction path. The Variational Reaction Coordinate (VRC) method is a novel approach that finds the reaction path by minimizing the variational reaction energy (VRE) of Quapp and Bofill. The VRE is the line integral of the gradient norm along a path between reactants and products and minimization of VRE has been shown to yield the steepest descent reaction path. In the VRC method, we represent the reaction path by a linear expansion in a set of continuous basis functions and find the optimized path by minimizing the VRE with respect to the linear expansion coefficients. Improved convergence is obtained by applying constraints to the spacing of the basis functions and coupling the minimization of the VRE to the minimization of one or more points along the path that correspond to intermediates and transition states. The VRC method is demonstrated by optimizing the reaction path for the Müller-Brown surface and by finding a reaction path passing through 5 transition states and 4 intermediates for a 10 atom Lennard-Jones cluster.

  19. Path optimization by a variational reaction coordinate method. I. Development of formalism and algorithms.

    PubMed

    Birkholz, Adam B; Schlegel, H Bernhard

    2015-12-28

    The development of algorithms to optimize reaction pathways between reactants and products is an active area of study. Existing algorithms typically describe the path as a discrete series of images (chain of states) which are moved downhill toward the path, using various reparameterization schemes, constraints, or fictitious forces to maintain a uniform description of the reaction path. The Variational Reaction Coordinate (VRC) method is a novel approach that finds the reaction path by minimizing the variational reaction energy (VRE) of Quapp and Bofill. The VRE is the line integral of the gradient norm along a path between reactants and products and minimization of VRE has been shown to yield the steepest descent reaction path. In the VRC method, we represent the reaction path by a linear expansion in a set of continuous basis functions and find the optimized path by minimizing the VRE with respect to the linear expansion coefficients. Improved convergence is obtained by applying constraints to the spacing of the basis functions and coupling the minimization of the VRE to the minimization of one or more points along the path that correspond to intermediates and transition states. The VRC method is demonstrated by optimizing the reaction path for the Müller-Brown surface and by finding a reaction path passing through 5 transition states and 4 intermediates for a 10 atom Lennard-Jones cluster.

  20. Development of TIF based figuring algorithm for deterministic pitch tool polishing

    NASA Astrophysics Data System (ADS)

    Yi, Hyun-Su; Kim, Sug-Whan; Yang, Ho-Soon; Lee, Yun-Woo

    2007-12-01

    Pitch is perhaps the oldest material used for optical polishing, leaving superior surface texture, and has been used widely in the optics shop floor. However, for its unpredictable controllability of removal characteristics, the pitch tool polishing has been rarely analysed quantitatively and many optics shops rely heavily on optician's "feel" even today. In order to bring a degree of process controllability to the pitch tool polishing, we added motorized tool motions to the conventional Draper type polishing machine and modelled the tool path in the absolute machine coordinate. We then produced a number of Tool Influence Function (TIF) both from an analytical model and a series of experimental polishing runs using the pitch tool. The theoretical TIFs agreed well with the experimental TIFs to the profile accuracy of 79 % in terms of its shape. The surface figuring algorithm was then developed in-house utilizing both theoretical and experimental TIFs. We are currently undertaking a series of trial figuring experiments to prove the performance of the polishing algorithm, and the early results indicate that the highly deterministic material removal control with the pitch tool can be achieved to a certain level of form error. The machine renovation, TIF theory and experimental confirmation, figuring simulation results are reported together with implications to deterministic polishing.

  1. Path optimization by a variational reaction coordinate method. I. Development of formalism and algorithms

    NASA Astrophysics Data System (ADS)

    Birkholz, Adam B.; Schlegel, H. Bernhard

    2015-12-01

    The development of algorithms to optimize reaction pathways between reactants and products is an active area of study. Existing algorithms typically describe the path as a discrete series of images (chain of states) which are moved downhill toward the path, using various reparameterization schemes, constraints, or fictitious forces to maintain a uniform description of the reaction path. The Variational Reaction Coordinate (VRC) method is a novel approach that finds the reaction path by minimizing the variational reaction energy (VRE) of Quapp and Bofill. The VRE is the line integral of the gradient norm along a path between reactants and products and minimization of VRE has been shown to yield the steepest descent reaction path. In the VRC method, we represent the reaction path by a linear expansion in a set of continuous basis functions and find the optimized path by minimizing the VRE with respect to the linear expansion coefficients. Improved convergence is obtained by applying constraints to the spacing of the basis functions and coupling the minimization of the VRE to the minimization of one or more points along the path that correspond to intermediates and transition states. The VRC method is demonstrated by optimizing the reaction path for the Müller-Brown surface and by finding a reaction path passing through 5 transition states and 4 intermediates for a 10 atom Lennard-Jones cluster.

  2. Development of a pharmacogenetic-guided warfarin dosing algorithm for Puerto Rican patients

    PubMed Central

    Ramos, Alga S; Seip, Richard L; Rivera-Miranda, Giselle; Felici-Giovanini, Marcos E; Garcia-Berdecia, Rafael; Alejandro-Cowan, Yirelia; Kocherla, Mohan; Cruz, Iadelisse; Feliu, Juan F; Cadilla, Carmen L; Renta, Jessica Y; Gorowski, Krystyna; Vergara, Cunegundo; Ruaño, Gualberto; Duconge, Jorge

    2012-01-01

    Aim This study was aimed at developing a pharmacogenetic-driven warfarin-dosing algorithm in 163 admixed Puerto Rican patients on stable warfarin therapy. Patients & methods A multiple linear-regression analysis was performed using log-transformed effective warfarin dose as the dependent variable, and combining CYP2C9 and VKORC1 genotyping with other relevant nongenetic clinical and demographic factors as independent predictors. Results The model explained more than two-thirds of the observed variance in the warfarin dose among Puerto Ricans, and also produced significantly better ‘ideal dose’ estimates than two pharmacogenetic models and clinical algorithms published previously, with the greatest benefit seen in patients ultimately requiring <7 mg/day. We also assessed the clinical validity of the model using an independent validation cohort of 55 Puerto Rican patients from Hartford, CT, USA (R2 = 51%). Conclusion Our findings provide the basis for planning prospective pharmacogenetic studies to demonstrate the clinical utility of genotyping warfarin-treated Puerto Rican patients. PMID:23215886

  3. Tropomodulin isoforms utilize specific binding functions to modulate dendrite development.

    PubMed

    Gray, Kevin T; Suchowerska, Alexandra K; Bland, Tyler; Colpan, Mert; Wayman, Gary; Fath, Thomas; Kostyukova, Alla S

    2016-06-01

    Tropomodulins (Tmods) cap F-actin pointed ends and have altered expression in the brain in neurological diseases. The function of Tmods in neurons has been poorly studied and their role in neurological diseases is entirely unknown. In this article, we show that Tmod1 and Tmod2, but not Tmod3, are positive regulators of dendritic complexity and dendritic spine morphology. Tmod1 increases dendritic branching distal from the cell body and the number of filopodia/thin spines. Tmod2 increases dendritic branching proximal to the cell body and the number of mature dendritic spines. Tmods utilize two actin-binding sites and two tropomyosin (Tpm)-binding sites to cap F-actin. Overexpression of Tmods with disrupted Tpm-binding sites indicates that Tmod1 and Tmod2 differentially utilize their Tpm- and actin-binding sites to affect morphology. Disruption of Tmod1's Tpm-binding sites abolished the overexpression phenotype. In contrast, overexpression of the mutated Tmod2 caused the same phenotype as wild type overexpression. Proximity ligation assays indicate that the mutated Tmods are shuttled similarly to wild type Tmods. Our data begins to uncover the roles of Tmods in neural development and the mechanism by which Tmods alter neural morphology. These observations in combination with altered Tmod expression found in several neurological diseases also suggest that dysregulation of Tmod expression may be involved in the pathology of these diseases. © 2016 Wiley Periodicals, Inc. PMID:27126680

  4. Software requirements specification document for the AREST code development

    SciTech Connect

    Engel, D.W.; McGrail, B.P.; Whitney, P.D.; Gray, W.J.; Williford, R.E.; White, M.D.; Eslinger, P.W.; Altenhofen, M.K.

    1993-11-01

    The Analysis of the Repository Source Term (AREST) computer code was selected in 1992 by the U.S. Department of Energy. The AREST code will be used to analyze the performance of an underground high level nuclear waste repository. The AREST code is being modified by the Pacific Northwest Laboratory (PNL) in order to evaluate the engineered barrier and waste package designs, model regulatory compliance, analyze sensitivities, and support total systems performance assessment modeling. The current version of the AREST code was developed to be a very useful tool for analyzing model uncertainties and sensitivities to input parameters. The code has also been used successfully in supplying source-terms that were used in a total systems performance assessment. The current version, however, has been found to be inadequate for the comparison and selection of a design for the waste package. This is due to the assumptions and simplifications made in the selection of the process and system models. Thus, the new version of the AREST code will be designed to focus on the details of the individual processes and implementation of more realistic models. This document describes the requirements of the new models that will be implemented. Included in this document is a section describing the near-field environmental conditions for this waste package modeling, description of the new process models that will be implemented, and a description of the computer requirements for the new version of the AREST code.

  5. Development-Specific Differences in the Proteomics of Angiostrongylus cantonensis

    PubMed Central

    Yao, Li-Li; Song, Zeng-Mei; Li, Xing-Pan; Hua, Qian-Qian; Li, Qiang; Xia, Chao-Ming

    2013-01-01

    Angiostrongyliasis is an emerging communicable disease. Several different hosts are required to complete the life cycle of Angiostrongylus cantonensis. However, we lack a complete understanding of variability of proteins across different developmental stages and their contribution to parasite survival and progression. In this study, we extracted soluble proteins from various stages of the A. cantonensis life cycle [female adults, male adults, the fifth-stage female larvae (FL5), the fifth-stage male larvae (ML5) and third-stage larvae (L3)], separated those proteins using two-dimensional difference gel electrophoresis (2D-DIGE) at pH 4–7, and analyzed the gel images using DeCyder 7.0 software. This proteomic analysis produced a total of 183 different dominant protein spots. Thirty-seven protein spots were found to have high confidence scores (>95%) by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS). Comparative proteomic analyses revealed that 29 spots represented cytoskeleton-associated proteins and functional proteins. Eight spots were unnamed proteins. Twelve protein spots that were matched to the EST of different-stage larvae of A. cantonensis were identified. Two genes and the internal control 18s were chosen for quantitative real-time PCR (qPCR) and the qPCR results were consistent with those of the DIGE studies. These findings will provide a new basis for understanding the characteristics of growth and development of A. cantonensis and the host–parasite relationship. They may also assist searches for candidate proteins suitable for use in diagnostic assays and as drug targets for the control of eosinophilic meningitis caused by A. cantonensis. PMID:24204717

  6. Detection of surface algal blooms using the newly developed algorithm surface algal bloom index (SABI)

    NASA Astrophysics Data System (ADS)

    Alawadi, Fahad

    2010-10-01

    specifically modelled to adapt to the marine habitat through its inclusion of ocean-colour sensitive bands in a four-band ratio-based relationship. The algorithm has demonstrated high stability against various environmental conditions like aerosol and sun glint.

  7. Development of a new metal artifact reduction algorithm by using an edge preserving method for CBCT imaging

    NASA Astrophysics Data System (ADS)

    Kim, Juhye; Nam, Haewon; Lee, Rena

    2015-07-01

    CT (computed tomography) images, metal materials such as tooth supplements or surgical clips can cause metal artifact and degrade image quality. In severe cases, this may lead to misdiagnosis. In this research, we developed a new MAR (metal artifact reduction) algorithm by using an edge preserving filter and the MATLAB program (Mathworks, version R2012a). The proposed algorithm consists of 6 steps: image reconstruction from projection data, metal segmentation, forward projection, interpolation, applied edge preserving smoothing filter, and new image reconstruction. For an evaluation of the proposed algorithm, we obtained both numerical simulation data and data for a Rando phantom. In the numerical simulation data, four metal regions were added into the Shepp Logan phantom for metal artifacts. The projection data of the metal-inserted Rando phantom were obtained by using a prototype CBCT scanner manufactured by medical engineering and medical physics (MEMP) laboratory research group in medical science at Ewha Womans University. After these had been adopted the proposed algorithm was performed, and the result were compared with the original image (with metal artifact without correction) and with a corrected image based on linear interpolation. Both visual and quantitative evaluations were done. Compared with the original image with metal artifacts and with the image corrected by using linear interpolation, both the numerical and the experimental phantom data demonstrated that the proposed algorithm reduced the metal artifact. In conclusion, the evaluation in this research showed that the proposed algorithm outperformed the interpolation based MAR algorithm. If an optimization and a stability evaluation of the proposed algorithm can be performed, the developed algorithm is expected to be an effective tool for eliminating metal artifacts even in commercial CT systems.

  8. Optimization of the double dosimetry algorithm for interventional cardiologists

    NASA Astrophysics Data System (ADS)

    Chumak, Vadim; Morgun, Artem; Bakhanova, Elena; Voloskiy, Vitalii; Borodynchik, Elena

    2014-11-01

    A double dosimetry method is recommended in interventional cardiology (IC) to assess occupational exposure; yet currently there is no common and universal algorithm for effective dose estimation. In this work, flexible and adaptive algorithm building methodology was developed and some specific algorithm applicable for typical irradiation conditions of IC procedures was obtained. It was shown that the obtained algorithm agrees well with experimental measurements and is less conservative compared to other known algorithms.

  9. Developing Image Processing Meta-Algorithms with Data Mining of Multiple Metrics

    PubMed Central

    Cunha, Alexandre; Toga, A. W.; Parker, D. Stott

    2014-01-01

    People often use multiple metrics in image processing, but here we take a novel approach of mining the values of batteries of metrics on image processing results. We present a case for extending image processing methods to incorporate automated mining of multiple image metric values. Here by a metric we mean any image similarity or distance measure, and in this paper we consider intensity-based and statistical image measures and focus on registration as an image processing problem. We show how it is possible to develop meta-algorithms that evaluate different image processing results with a number of different metrics and mine the results in an automated fashion so as to select the best results. We show that the mining of multiple metrics offers a variety of potential benefits for many image processing problems, including improved robustness and validation. PMID:24653748

  10. Development of Great Lakes algorithms for the Nimbus-G coastal zone color scanner

    NASA Technical Reports Server (NTRS)

    Tanis, F. J.; Lyzenga, D. R.

    1981-01-01

    A series of experiments in the Great Lakes designed to evaluate the application of the Nimbus G satellite Coastal Zone Color Scanner (CZCS) were conducted. Absorption and scattering measurement data were reduced to obtain a preliminary optical model for the Great Lakes. Available optical models were used in turn to calculate subsurface reflectances for expected concentrations of chlorophyll-a pigment and suspended minerals. Multiple nonlinear regression techniques were used to derive CZCS water quality prediction equations from Great Lakes simulation data. An existing atmospheric model was combined with a water model to provide the necessary simulation data for evaluation of the preliminary CZCS algorithms. A CZCS scanner model was developed which accounts for image distorting scanner and satellite motions. This model was used in turn to generate mapping polynomials that define the transformation from the original image to one configured in a polyconic projection. Four computer programs (FORTRAN IV) for image transformation are presented.

  11. Development of a Collins-type cryocooler floating piston control algorithm

    NASA Astrophysics Data System (ADS)

    Hogan, Jake; Hannon, Charles L.; Brisson, John

    2012-06-01

    The Collins-type cryocooler uses a floating piston design for the working fluid expansion. The piston floats between a cold volume, where the working fluid is expanded, and a warm volume. The piston is shuttled between opposite ends of the closed cylinder by opening and closing valves connecting several reservoirs at various pressures to the warm volume. Ideally, these pressures should be distributed between the high and low system pressure to gain good control of the piston motion. In this work, a numerical quasi-steady thermodynamic model is developed for the piston cycle. The model determines the steady state pressure distribution of the reservoirs for a given control algorithm. The results are then extended to show how valve timing modifications can be used to overcome helium leakage past the piston during operation.

  12. Development of a Low-Lift Chiller Controller and Simplified Precooling Control Algorithm - Final Report

    SciTech Connect

    Gayeski, N.; Armstrong, Peter; Alvira, M.; Gagne, J.; Katipamula, Srinivas

    2011-11-30

    KGS Buildings LLC (KGS) and Pacific Northwest National Laboratory (PNNL) have developed a simplified control algorithm and prototype low-lift chiller controller suitable for model-predictive control in a demonstration project of low-lift cooling. Low-lift cooling is a highly efficient cooling strategy conceived to enable low or net-zero energy buildings. A low-lift cooling system consists of a high efficiency low-lift chiller, radiant cooling, thermal storage, and model-predictive control to pre-cool thermal storage overnight on an optimal cooling rate trajectory. We call the properly integrated and controlled combination of these elements a low-lift cooling system (LLCS). This document is the final report for that project.

  13. Development of Web-Based Menu Planning Support System and its Solution Using Genetic Algorithm

    NASA Astrophysics Data System (ADS)

    Kashima, Tomoko; Matsumoto, Shimpei; Ishii, Hiroaki

    2009-10-01

    Recently lifestyle-related diseases have become an object of public concern, while at the same time people are being more health conscious. As an essential factor for causing the lifestyle-related diseases, we assume that the knowledge circulation on dietary habits is still insufficient. This paper focuses on everyday meals close to our life and proposes a well-balanced menu planning system as a preventive measure of lifestyle-related diseases. The system is developed by using a Web-based frontend and it provides multi-user services and menu information sharing capabilities like social networking services (SNS). The system is implemented on a Web server running Apache (HTTP server software), MySQL (database management system), and PHP (scripting language for dynamic Web pages). For the menu planning, a genetic algorithm is applied by understanding this problem as multidimensional 0-1 integer programming.

  14. Develop algorithms to improve detectability of defects in Sonic IR imaging NDE

    NASA Astrophysics Data System (ADS)

    Obeidat, Omar; Yu, Qiuye; Han, Xiaoyan

    2016-02-01

    Sonic Infrared (IR) technology is relative new in the NDE family. It is a fast, wide area imaging method. It combines ultrasound excitation and infrared imaging while the former to apply ultrasound energy thus induce friction heating in defects and the latter to capture the IR emission from the target. This technology can detect both surface and subsurface defects such as cracks and disbands/delaminations in various materials, metal/metal alloy or composites. However, certain defects may results in only very small IR signature be buried in noise or heating patterns. In such cases, to effectively extract the defect signals becomes critical in identifying the defects. In this paper, we will present algorithms which are developed to improve the detectability of defects in Sonic IR.

  15. Algorithm and code development for unsteady three-dimensional Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Obayashi, Shigeru

    1993-01-01

    In the last two decades, there have been extensive developments in computational aerodynamics, which constitutes a major part of the general area of computational fluid dynamics. Such developments are essential to advance the understanding of the physics of complex flows, to complement expensive wind-tunnel tests, and to reduce the overall design cost of an aircraft, particularly in the area of aeroelasticity. Aeroelasticity plays an important role in the design and development of aircraft, particularly modern aircraft, which tend to be more flexible. Several phenomena that can be dangerous and limit the performance of an aircraft occur because of the interaction of the flow with flexible components. For example, an aircraft with highly swept wings may experience vortex-induced aeroelastic oscillations. Also, undesirable aeroelastic phenomena due to the presence and movement of shock waves occur in the transonic range. Aeroelastically critical phenomena, such as a low transonic flutter speed, have been known to occur through limited wind-tunnel tests and flight tests. Aeroelastic tests require extensive cost and risk. An aeroelastic wind-tunnel experiment is an order of magnitude more expensive than a parallel experiment involving only aerodynamics. By complementing the wind-tunnel experiments with numerical simulations the overall cost of the development of aircraft can be considerably reduced. In order to accurately compute aeroelastic phenomenon it is necessary to solve the unsteady Euler/Navier-Stokes equations simultaneously with the structural equations of motion. These equations accurately describe the flow phenomena for aeroelastic applications. At Ames a code, ENSAERO, is being developed for computing the unsteady aerodynamics and aeroelasticity of aircraft and it solves the Euler/Navier-Stokes equations. The purpose of this contract is to continue the algorithm enhancements of ENSAERO and to apply the code to complicated geometries. During the last year

  16. Developing Multiple Diverse Potential Designs for Heat Transfer Utilizing Graph Based Evolutionary Algorithms

    SciTech Connect

    David J. Muth Jr.

    2006-09-01

    This paper examines the use of graph based evolutionary algorithms (GBEAs) to find multiple acceptable solutions for heat transfer in engineering systems during the optimization process. GBEAs are a type of evolutionary algorithm (EA) in which a topology, or geography, is imposed on an evolving population of solutions. The rates at which solutions can spread within the population are controlled by the choice of topology. As in nature geography can be used to develop and sustain diversity within the solution population. Altering the choice of graph can create a more or less diverse population of potential solutions. The choice of graph can also affect the convergence rate for the EA and the number of mating events required for convergence. The engineering system examined in this paper is a biomass fueled cookstove used in developing nations for household cooking. In this cookstove wood is combusted in a small combustion chamber and the resulting hot gases are utilized to heat the stove’s cooking surface. The spatial temperature profile of the cooking surface is determined by a series of baffles that direct the flow of hot gases. The optimization goal is to find baffle configurations that provide an even temperature distribution on the cooking surface. Often in engineering, the goal of optimization is not to find the single optimum solution but rather to identify a number of good solutions that can be used as a starting point for detailed engineering design. Because of this a key aspect of evolutionary optimization is the diversity of the solutions found. The key conclusion in this paper is that GBEA’s can be used to create multiple good solutions needed to support engineering design.

  17. HEAVY DUTY DIESEL VEHICLE LOAD ESTIMATION: DEVELOPMENT OF VEHICLE ACTIVITY OPTIMIZATION ALGORITHM

    EPA Science Inventory

    The Heavy-Duty Vehicle Modal Emission Model (HDDV-MEM) developed by the Georgia Institute of Technology(Georgia Tech) has a capability to model link-specific second-by-second emissions using speed/accleration matrices. To estimate emissions, engine power demand calculated usin...

  18. Algorithms and Algorithmic Languages.

    ERIC Educational Resources Information Center

    Veselov, V. M.; Koprov, V. M.

    This paper is intended as an introduction to a number of problems connected with the description of algorithms and algorithmic languages, particularly the syntaxes and semantics of algorithmic languages. The terms "letter, word, alphabet" are defined and described. The concept of the algorithm is defined and the relation between the algorithm and…

  19. Developing a modified SEBAL algorithm that is responsive to advection by using limited weather data

    NASA Astrophysics Data System (ADS)

    Mkhwanazi, Mcebisi

    The use of Remote Sensing ET algorithms in water management, especially for agricultural purposes is increasing, and there are more models being introduced. The Surface Energy Balance Algorithm for Land (SEBAL) and its variant, Mapping Evapotranspiration with Internalized Calibration (METRIC) are some of the models that are being widely used. While SEBAL has several advantages over other RS models, including that it does not require prior knowledge of soil, crop and other ground details, it has the downside of underestimating evapotranspiration (ET) on days when there is advection, which may be in most cases in arid and semi-arid areas. METRIC, however has been modified to be able to account for advection, but in doing so it requires hourly weather data. In most developing countries, while accurate estimates of ET are required, the weather data necessary to use METRIC may not be available. This research therefore was meant to develop a modified version of SEBAL that would require minimal weather data that may be available in these areas, and still estimate ET accurately. The data that were used to develop this model were minimum and maximum temperatures, wind data, preferably the run of wind in the afternoon, and wet bulb temperature. These were used to quantify the advected energy that would increase ET in the field. This was a two-step process; the first was developing the model for standard conditions, which was described as a healthy cover of alfalfa, 40-60 cm tall and not short of water. Under standard conditions, when estimated ET using modified SEBAL was compared with lysimeter-measured ET, the modified SEBAL model had a Mean Bias Error (MBE) of 2.2 % compared to -17.1 % from the original SEBAL. The Root Mean Square Error (RMSE) was lower for the modified SEBAL model at 10.9 % compared to 25.1 % for the original SEBAL. The modified SEBAL model, developed on an alfalfa field in Rocky Ford, was then tested on other crops; beans and wheat. It was also tested on

  20. Production of proxy datasets in support of GOES-R algorithm development

    NASA Astrophysics Data System (ADS)

    Hillger, Don; Brummer, Renate; Grasso, Louie; Sengupta, Manajit; DeMaria, Robert; DeMaria, Mark

    2009-08-01

    Realistic simulated satellite imagery for GOES-R ABI using state of the art mesoscale modeling and accurate radiative transfer is being produced at the Cooperative Institute for Research in the Atmosphere (CIRA) and used in developing and testing new products. Products which have been produced in support of the GOES-R Algorithm Working Group (AWG) include 6-hour imagery at 5 minute intervals for 4 GOES-R ABI bands (2.25 μm, 3.9 μm, 10.35 μm, and 11.2 μm) that include fire hotspots. The imagery was initially produced at 400 m resolution and a point-spread function applied on the data to create ABI resolution imagery. Also created was corresponding imagery for current GOES at 2 bands (3.9 μm and 10.7 μm). These fire hotspots were simulated for 4 different cases over Kansas, Central America, and California. Additionally, high quality imagery for 10 GOES-R ABI bands (3.9 μm and higher) were produced for 4 extreme weather events. These simulations include a lake effect snow case, a severe weather case, Hurricane Wilma, and Hurricane Lili. All simulations for extreme weather events were also performed for current GOES and compared with available imagery for quality control purposes. Future work focuses on the creation of additional fire proxy datasets including true-color imagery for 3 ABI visible bands. This project also supports the GOES-R AWG Aviation Team in their effort to test their convective initiation algorithm by providing simulated ABI datasets for bands between 2.25 μm and 13.3 μm for a severe weather case. In addition, simulated ABI was generated from MSG infrared (IR) window band imagery and corresponding simulated ABI for the 7 tropical cyclones from 2006-2008 that became hurricanes in the east Atlantic for evaluation of the GOES-R ADT algorithm conducted by the University of Wisconsin Cooperative Institute for Meteorological Satellite Studies (CIMSS).

  1. Development of a Near-Real Time Hail Damage Swath Identification Algorithm for Vegetation

    NASA Technical Reports Server (NTRS)

    Bell, Jordan R.; Molthan, Andrew L.; Schultz, Lori A.; McGrath, Kevin M.; Burks, Jason E.

    2015-01-01

    The Midwest is home to one of the world's largest agricultural growing regions. Between the time period of late May through early September, and with irrigation and seasonal rainfall these crops are able to reach their full maturity. Using moderate to high resolution remote sensors, the monitoring of the vegetation can be achieved using the red and near-infrared wavelengths. These wavelengths allow for the calculation of vegetation indices, such as Normalized Difference Vegetation Index (NDVI). The vegetation growth and greenness, in this region, grows and evolves uniformly as the growing season progresses. However one of the biggest threats to Midwest vegetation during the time period is thunderstorms that bring large hail and damaging winds. Hail and wind damage to crops can be very expensive to crop growers and, damage can be spread over long swaths associated with the tracks of the damaging storms. Damage to the vegetation can be apparent in remotely sensed imagery and is visible from space after storms slightly damage the crops, allowing for changes to occur slowly over time as the crops wilt or more readily apparent if the storms strip material from the crops or destroy them completely. Previous work on identifying these hail damage swaths used manual interpretation by the way of moderate and higher resolution satellite imagery. With the development of an automated and near-real time hail swath damage identification algorithm, detection can be improved, and more damage indicators be created in a faster and more efficient way. The automated detection of hail damage swaths will examine short-term, large changes in the vegetation by differencing near-real time eight day NDVI composites and comparing them to post storm imagery from the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard Terra and Aqua and Visible Infrared Imaging Radiometer Suite (VIIRS) aboard Suomi NPP. In addition land surface temperatures from these instruments will be examined as

  2. Nonlinear Motion Cueing Algorithm: Filtering at Pilot Station and Development of the Nonlinear Optimal Filters for Pitch and Roll

    NASA Technical Reports Server (NTRS)

    Zaychik, Kirill B.; Cardullo, Frank M.

    2012-01-01

    Telban and Cardullo have developed and successfully implemented the non-linear optimal motion cueing algorithm at the Visual Motion Simulator (VMS) at the NASA Langley Research Center in 2005. The latest version of the non-linear algorithm performed filtering of motion cues in all degrees-of-freedom except for pitch and roll. This manuscript describes the development and implementation of the non-linear optimal motion cueing algorithm for the pitch and roll degrees of freedom. Presented results indicate improved cues in the specified channels as compared to the original design. To further advance motion cueing in general, this manuscript describes modifications to the existing algorithm, which allow for filtering at the location of the pilot's head as opposed to the centroid of the motion platform. The rational for such modification to the cueing algorithms is that the location of the pilot's vestibular system must be taken into account as opposed to the off-set of the centroid of the cockpit relative to the center of rotation alone. Results provided in this report suggest improved performance of the motion cueing algorithm.

  3. Development of algorithms for capacitance imaging techniques for fluidized bed flow fields. 1990 Annual report

    SciTech Connect

    Loudin, W.J.

    1991-01-01

    The objective of this research is to provide support for the instrumentation concept of a High Resolution Capacitance Imaging System (HRCIS). The work involves the development and evaluation of the mathematical theory and associated models and algorithms which reduce the electronic measurements to valid physical characterizations. The research and development require the investigation of techniques to solve large systems of equations based on capacitance measurements for various electrode configurations in order to estimate densities of materials in a cross-section of a fluidized bed. Capacitance measurements are made for 400 connections of the 32-electrode system; 400 corresponding electric-field curves are constructed by solving a second order partial differential equation. These curves are used to partition the circular disk into 193 regions called pixels, and the density of material in each pixel is to be estimated. Two methods of approximating densities have been developed and consideration of a third method has been initiated. One method (Method 1) is based on products of displacement currents for intersecting electric-field curves on a cross section. For each pixel one point of intersection is chosen, and the product of the capacitance measurements is found. Both the product and the square-root-of-product seem to yield good relative distribution of densities.

  4. Development of algorithms for capacitance imaging techniques for fluidized bed flow fields

    SciTech Connect

    Loudin, W.J.

    1991-01-01

    The objective of this research is to provide support for the instrumentation concept of a High Resolution Capacitance Imaging System (HRCIS). The work involves the development and evaluation of the mathematical theory and associated models and algorithms which reduce the electronic measurements to valid physical characterizations. The research and development require the investigation of techniques to solve large systems of equations based on capacitance measurements for various electrode configurations in order to estimate densities of materials in a cross-section of a fluidized bed. Capacitance measurements are made for 400 connections of the 32-electrode system; 400 corresponding electric-field curves are constructed by solving a second order partial differential equation. These curves are used to partition the circular disk into 193 regions called pixels, and the density of material in each pixel is to be estimated. Two methods of approximating densities have been developed and consideration of a third method has been initiated. One method (Method 1) is based on products of displacement currents for intersecting electric-field curves on a cross section. For each pixel one point of intersection is chosen, and the product of the capacitance measurements is found. Both the product and the square-root-of-product seem to yield good relative distribution of densities.

  5. The development of a near-real time hail damage swath identification algorithm for vegetation

    NASA Astrophysics Data System (ADS)

    Bell, Jordan R.

    The central United States is primarily covered in agricultural lands with a growing season that peaks during the same time as the region's climatological maximum for severe weather. These severe thunderstorms can bring large hail that can cause extensive areas of crop damage, which can be difficult to survey from the ground. Satellite remote sensing can help with the identification of these damaged areas. This study examined three techniques for identifying damage using satellite imagery that could be used in the development of a near-real time algorithm formulated for the detection of damage to agriculture caused by hail. The three techniques: a short term Normalized Difference Vegetation Index (NDVI) change product, a modified Vegetation Health Index (mVHI) that incorporates both NDVI and land surface temperature (LST), and a feature detection technique based on NDVI and LST anomalies were tested on a single training case and five case studies. Skill scores were computed for each of the techniques during the training case and each case study. Among the best-performing case studies, the probability of detection (POD) for the techniques ranged from 0.527 - 0.742. Greater skill was noted for environments that occurred later in the growing season over areas where the land cover was consistently one or two types of uniform vegetation. The techniques struggled in environments where the land cover was not able to provide uniform vegetation, resulting in POD of 0.067 - 0.223. The feature detection technique was selected to be used for the near-real-time algorithm, based on the consistent performance throughout the entire growing season.

  6. Development of the Tardivo Algorithm to Predict Amputation Risk of Diabetic Foot

    PubMed Central

    Tardivo, João Paulo; Baptista, Maurício S.; Correa, João Antonio; Adami, Fernando; Pinhal, Maria Aparecida Silva

    2015-01-01

    Diabetes is a chronic disease that affects almost 19% of the elderly population in Brazil and similar percentages around the world. Amputation of lower limbs in diabetic patients who present foot complications is a common occurrence with a significant reduction of life quality, and heavy costs on the health system. Unfortunately, there is no easy protocol to define the conditions that should be considered to proceed to amputation. The main objective of the present study is to create a simple prognostic score to evaluate the diabetic foot, which is called Tardivo Algorithm. Calculation of the score is based on three main factors: Wagner classification, signs of peripheral arterial disease (PAD), which is evaluated by using Peripheral Arterial Disease Classification, and the location of ulcers. The final score is obtained by multiplying the value of the individual factors. Patients with good peripheral vascularization received a value of 1, while clinical signs of ischemia received a value of 2 (PAD 2). Ulcer location was defined as forefoot, midfoot and hind foot. The conservative treatment used in patients with scores below 12 was based on a recently developed Photodynamic Therapy (PDT) protocol. 85.5% of these patients presented a good outcome and avoided amputation. The results showed that scores 12 or higher represented a significantly higher probability of amputation (Odds ratio and logistic regression-IC 95%, 12.2–1886.5). The Tardivo algorithm is a simple prognostic score for the diabetic foot, easily accessible by physicians. It helps to determine the amputation risk and the best treatment, whether it is conservative or surgical management. PMID:26281044

  7. Development and validation of a simple algorithm for initiation of CPAP in neonates with respiratory distress in Malawi

    PubMed Central

    Hundalani, Shilpa G; Richards-Kortum, Rebecca; Oden, Maria; Kawaza, Kondwani; Gest, Alfred; Molyneux, Elizabeth

    2015-01-01

    Background Low-cost bubble continuous positive airway pressure (bCPAP) systems have been shown to improve survival in neonates with respiratory distress, in developing countries including Malawi. District hospitals in Malawi implementing CPAP requested simple and reliable guidelines to enable healthcare workers with basic skills and minimal training to determine when treatment with CPAP is necessary. We developed and validated TRY (T: Tone is good, R: Respiratory Distress and Y=Yes) CPAP, a simple algorithm to identify neonates with respiratory distress who would benefit from CPAP. Objective To validate the TRY CPAP algorithm for neonates with respiratory distress in a low-resource setting. Methods We constructed an algorithm using a combination of vital signs, tone and birth weight to determine the need for CPAP in neonates with respiratory distress. Neonates admitted to the neonatal ward of Queen Elizabeth Central Hospital, in Blantyre, Malawi, were assessed in a prospective, cross-sectional study. Nurses and paediatricians-in-training assessed neonates to determine whether they required CPAP using the TRY CPAP algorithm. To establish the accuracy of the TRY CPAP algorithm in evaluating the need for CPAP, their assessment was compared with the decision of a neonatologist blinded to the TRY CPAP algorithm findings. Results 325 neonates were evaluated over a 2-month period; 13% were deemed to require CPAP by the neonatologist. The inter-rater reliability with the algorithm was 0.90 for nurses and 0.97 for paediatricians-in-training using the neonatologist's assessment as the reference standard. Conclusions The TRY CPAP algorithm has the potential to be a simple and reliable tool to assist nurses and clinicians in identifying neonates who require treatment with CPAP in low-resource settings. PMID:25877290

  8. 15 CFR 9.4 - Development of voluntary energy conservation specifications.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ..., retailers, consumers, environmentalists, and other interested parties shall develop proposed Specifications... transcript shall be kept of any oral presentations. (e) The Secretary, after consideration of all written...

  9. Calibration and algorithm development for estimation of nitrogen in wheat crop using tractor mounted N-sensor.

    PubMed

    Singh, Manjeet; Kumar, Rajneesh; Sharma, Ankit; Singh, Bhupinder; Thind, S K

    2015-01-01

    The experiment was planned to investigate the tractor mounted N-sensor (Make Yara International) to predict nitrogen (N) for wheat crop under different nitrogen levels. It was observed that, for tractor mounted N-sensor, spectrometers can scan about 32% of total area of crop under consideration. An algorithm was developed using a linear relationship between sensor sufficiency index (SIsensor) and SISPAD to calculate the N app as a function of SISPAD. There was a strong correlation among sensor attributes (sensor value, sensor biomass, and sensor NDVI) and different N-levels. It was concluded that tillering stage is most prominent stage to predict crop yield as compared to the other stages by using sensor attributes. The algorithms developed for tillering and booting stages are useful for the prediction of N-application rates for wheat crop. N-application rates predicted by algorithm developed and sensor value were almost the same for plots with different levels of N applied. PMID:25811039

  10. Calibration and Algorithm Development for Estimation of Nitrogen in Wheat Crop Using Tractor Mounted N-Sensor

    PubMed Central

    Singh, Manjeet; Kumar, Rajneesh; Sharma, Ankit; Singh, Bhupinder; Thind, S. K.

    2015-01-01

    The experiment was planned to investigate the tractor mounted N-sensor (Make Yara International) to predict nitrogen (N) for wheat crop under different nitrogen levels. It was observed that, for tractor mounted N-sensor, spectrometers can scan about 32% of total area of crop under consideration. An algorithm was developed using a linear relationship between sensor sufficiency index (SIsensor) and SISPAD to calculate the Napp as a function of SISPAD. There was a strong correlation among sensor attributes (sensor value, sensor biomass, and sensor NDVI) and different N-levels. It was concluded that tillering stage is most prominent stage to predict crop yield as compared to the other stages by using sensor attributes. The algorithms developed for tillering and booting stages are useful for the prediction of N-application rates for wheat crop. N-application rates predicted by algorithm developed and sensor value were almost the same for plots with different levels of N applied. PMID:25811039

  11. Ice surface temperature retrieval from AVHRR, ATSR, and passive microwave satellite data: Algorithm development and application

    NASA Technical Reports Server (NTRS)

    Key, Jeff; Maslanik, James; Steffen, Konrad

    1994-01-01

    One essential parameter used in the estimation of radiative and turbulent heat fluxes from satellite data is surface temperature. Sea and land surface temperature (SST and LST) retrieval algorithms that utilize the thermal infrared portion of the spectrum have been developed, with the degree of success dependent primarily upon the variability of the surface and atmospheric characteristics. However, little effort has been directed to the retrieval of the sea ice surface temperature (IST) in the Arctic and Antarctic pack ice or the ice sheet surface temperature over Antarctica and Greenland. The reason is not one of methodology, but rather our limited knowledge of atmospheric temperature, humidity, and aerosol vertical, spatial and temporal distributions, the microphysical properties of polar clouds, and the spectral characteristics of snow, ice, and water surfaces. Over the open ocean the surface is warm, dark, and relatively homogeneous. This makes SST retrieval, including cloud clearing, a fairly straightforward task. Over the ice, however, the surface within a single satellite pixel is likely to be highly heterogeneous, a mixture of ice of various thicknesses, open water, and snow cover in the case of sea ice. Additionally, the Arctic is cloudy - very cloudy - with typical cloud cover amounts ranging from 60-90 percent. There are few observations of cloud cover amounts over Antarctica. The goal of this research is to increase our knowledge of surface temperature patterns and magnitudes in both polar regions, by examining existing data and improving our ability to use satellite data as a monitoring tool. Four instruments are of interest in this study: the AVHRR, ATSR, SMMR, and SSM/I. Our objectives are as follows. Refine the existing AVHRR retrieval algorithm defined in Key and Haefliger (1992; hereafter KH92) and applied elsewhere. Develop a method for IST retrieval from ATSR data similar to the one used for SST. Further investigate the possibility of estimating

  12. Examination of a genetic algorithm for the application in high-throughput downstream process development.

    PubMed

    Treier, Katrin; Berg, Annette; Diederich, Patrick; Lang, Katharina; Osberghaus, Anna; Dismer, Florian; Hubbuch, Jürgen

    2012-10-01

    Compared to traditional strategies, application of high-throughput experiments combined with optimization methods can potentially speed up downstream process development and increase our understanding of processes. In contrast to the method of Design of Experiments in combination with response surface analysis (RSA), optimization approaches like genetic algorithms (GAs) can be applied to identify optimal parameter settings in multidimensional optimizations tasks. In this article the performance of a GA was investigated applying parameters applicable in high-throughput downstream process development. The influence of population size, the design of the initial generation and selection pressure on the optimization results was studied. To mimic typical experimental data, four mathematical functions were used for an in silico evaluation. The influence of GA parameters was minor on landscapes with only one optimum. On landscapes with several optima, parameters had a significant impact on GA performance and success in finding the global optimum. Premature convergence increased as the number of parameters and noise increased. RSA was shown to be comparable or superior for simple systems and low to moderate noise. For complex systems or high noise levels, RSA failed, while GA optimization represented a robust tool for process optimization. Finally, the effect of different objective functions is shown exemplarily for a refolding optimization of lysozyme.

  13. Evaluating the administration costs of biologic drugs: development of a cost algorithm.

    PubMed

    Tetteh, Ebenezer K; Morris, Stephen

    2014-12-01

    Biologic drugs, as with all other medical technologies, are subject to a number of regulatory, marketing, reimbursement (financing) and other demand-restricting hurdles applied by healthcare payers. One example is the routine use of cost-effectiveness analyses or health technology assessments to determine which medical technologies offer value-for-money. The manner in which these assessments are conducted suggests that, holding all else equal, the economic value of biologic drugs may be determined by how much is spent on administering these drugs or trade-offs between drug acquisition and administration costs. Yet, on the supply-side, it seems very little attention is given to how manufacturing and formulation choices affect healthcare delivery costs. This paper evaluates variations in the administration costs of biologic drugs, taking care to ensure consistent inclusion of all relevant cost resources. From this, it develops a regression-based algorithm with which manufacturers could possibly predict, during process development, how their manufacturing and formulation choices may impact on the healthcare delivery costs of their products. PMID:26208926

  14. Development of fast line scanning imaging algorithm for diseased chicken detection

    NASA Astrophysics Data System (ADS)

    Yang, Chun-Chieh; Chao, Kuanglin; Chen, Yud-Ren; Kim, Moon S.

    2005-11-01

    A hyperspectral line-scan imaging system for automated inspection of wholesome and diseased chickens was developed and demonstrated. The hyperspectral imaging system consisted of an electron-multiplying charge-coupled-device (EMCCD) camera and an imaging spectrograph. The system used a spectrograph to collect spectral measurements across a pixel-wide vertical linear field of view through which moving chicken carcasses passed. After a series of image calibration procedures, the hyperspectral line-scan images were collected for chickens on a laboratory simulated processing line. From spectral analysis, four key wavebands for differentiating between wholesome and systemically diseased chickens were selected: 413 nm, 472 nm, 515 nm, and 546 nm, and a reference waveband, 622 nm. The ratio of relative reflectance between each key wavelength and the reference wavelength was calculated as an image feature. A fuzzy logic-based algorithm utilizing the key wavebands was developed to identify individual pixels on the chicken surface exhibiting symptoms of systemic disease. Two differentiation methods were built to successfully differentiate 72 systemically diseased chickens from 65 wholesome chickens.

  15. Development of a brief assessment and algorithm for ascertaining dementia in low-income and middle-income countries: the 10/66 short dementia diagnostic schedule

    PubMed Central

    Stewart, Robert; Guerchet, Maëlenn; Prince, Martin

    2016-01-01

    Objectives To develop and evaluate a short version of the 10/66 dementia diagnostic schedule for use in low-income and middle-income countries. Design Split-half analysis for algorithm development and testing; cross-evaluation of short-schedule and standard-schedule algorithms in 12 community surveys. Settings (1) The 10/66 pilot sample data set of people aged 60 years and over in 25 international centres each recruiting the following samples: (a) dementia; (b) depression, no dementia; (c) no dementia, high education and (d) no dementia, low education. (2) Cross-sectional surveys of people aged 65 years or more from 12 urban and rural sites in 8 countries (Cuba, Dominican Republic, Peru, Mexico, Venezuela, India, China and Puerto Rico). Participants In the 10/66 pilot samples, the algorithm for the short schedule was developed in 1218 participants and tested in 1211 randomly selected participants; it was evaluated against the algorithm for the standard 10/66 schedule in 16 536 survey participants. Outcome measures The short diagnostic schedule was derived from the Community Screening Instrument for Dementia, the CERAD 10-word list recall task and the Euro-D depression screen; it was evaluated against clinically assigned groups in the pilot data and against the standard schedule (using the Geriatric Mental State (GMS) rather than Euro-D) in the surveys. Results In the pilot test sample, the short-schedule algorithm ascertained dementia with 94.2% sensitivity. Specificities were 80.2% in depression, 96.6% in the high-education group and 92.7% in the low-education group. In survey samples, it coincided with standard algorithm dementia classifications with over 95% accuracy in most sites. Estimated dementia prevalences in the survey samples were not consistently higher or lower using the short compared to standard schedule. Conclusions For epidemiological studies of dementia in low-income and middle-income settings where the GMS interview (and/or interviewer

  16. comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence.

    PubMed

    Hallen, Mark A; Donald, Bruce R

    2016-05-01

    Practical protein design problems require designing sequences with a combination of affinity, stability, and specificity requirements. Multistate protein design algorithms model multiple structural or binding "states" of a protein to address these requirements. comets provides a new level of versatile, efficient, and provable multistate design. It provably returns the minimum with respect to sequence of any desired linear combination of the energies of multiple protein states, subject to constraints on other linear combinations. Thus, it can target nearly any combination of affinity (to one or multiple ligands), specificity, and stability (for multiple states if needed). Empirical calculations on 52 protein design problems showed comets is far more efficient than the previous state of the art for provable multistate design (exhaustive search over sequences). comets can handle a very wide range of protein flexibility and can enumerate a gap-free list of the best constraint-satisfying sequences in order of objective function value. PMID:26761641

  17. Development of an Innovative Algorithm for Aerodynamics-Structure Interaction Using Lattice Boltzmann Method

    NASA Technical Reports Server (NTRS)

    Mei, Ren-Wei; Shyy, Wei; Yu, Da-Zhi; Luo, Li-Shi; Rudy, David (Technical Monitor)

    2001-01-01

    The lattice Boltzmann equation (LBE) is a kinetic formulation which offers an alternative computational method capable of solving fluid dynamics for various systems. Major advantages of the method are owing to the fact that the solution for the particle distribution functions is explicit, easy to implement, and the algorithm is natural to parallelize. In this final report, we summarize the works accomplished in the past three years. Since most works have been published, the technical details can be found in the literature. Brief summary will be provided in this report. In this project, a second-order accurate treatment of boundary condition in the LBE method is developed for a curved boundary and tested successfully in various 2-D and 3-D configurations. To evaluate the aerodynamic force on a body in the context of LBE method, several force evaluation schemes have been investigated. A simple momentum exchange method is shown to give reliable and accurate values for the force on a body in both 2-D and 3-D cases. Various 3-D LBE models have been assessed in terms of efficiency, accuracy, and robustness. In general, accurate 3-D results can be obtained using LBE methods. The 3-D 19-bit model is found to be the best one among the 15-bit, 19-bit, and 27-bit LBE models. To achieve desired grid resolution and to accommodate the far field boundary conditions in aerodynamics computations, a multi-block LBE method is developed by dividing the flow field into various blocks each having constant lattice spacing. Substantial contribution to the LBE method is also made through the development of a new, generalized lattice Boltzmann equation constructed in the moment space in order to improve the computational stability, detailed theoretical analysis on the stability, dispersion, and dissipation characteristics of the LBE method, and computational studies of high Reynolds number flows with singular gradients. Finally, a finite difference-based lattice Boltzmann method is

  18. Development and verification of an analytical algorithm to predict absorbed dose distributions in ocular proton therapy using Monte Carlo simulations.

    PubMed

    Koch, Nicholas C; Newhauser, Wayne D

    2010-02-01

    Proton beam radiotherapy is an effective and non-invasive treatment for uveal melanoma. Recent research efforts have focused on improving the dosimetric accuracy of treatment planning and overcoming the present limitation of relative analytical dose calculations. Monte Carlo algorithms have been shown to accurately predict dose per monitor unit (D/MU) values, but this has yet to be shown for analytical algorithms dedicated to ocular proton therapy, which are typically less computationally expensive than Monte Carlo algorithms. The objective of this study was to determine if an analytical method could predict absolute dose distributions and D/MU values for a variety of treatment fields like those used in ocular proton therapy. To accomplish this objective, we used a previously validated Monte Carlo model of an ocular nozzle to develop an analytical algorithm to predict three-dimensional distributions of D/MU values from pristine Bragg peaks and therapeutically useful spread-out Bragg peaks (SOBPs). Results demonstrated generally good agreement between the analytical and Monte Carlo absolute dose calculations. While agreement in the proximal region decreased for beams with less penetrating Bragg peaks compared with the open-beam condition, the difference was shown to be largely attributable to edge-scattered protons. A method for including this effect in any future analytical algorithm was proposed. Comparisons of D/MU values showed typical agreement to within 0.5%. We conclude that analytical algorithms can be employed to accurately predict absolute proton dose distributions delivered by an ocular nozzle.

  19. A non-device-specific approach to display characterization based on linear, nonlinear, and hybrid search algorithms.

    PubMed

    Ban, Hiroshi; Yamamoto, Hiroki

    2013-01-01

    In almost all of the recent vision experiments, stimuli are controlled via computers and presented on display devices such as cathode ray tubes (CRTs). Display characterization is a necessary procedure for such computer-aided vision experiments. The standard display characterization called "gamma correction" and the following linear color transformation procedure are established for CRT displays and widely used in the current vision science field. However, the standard two-step procedure is based on the internal model of CRT display devices, and there is no guarantee as to whether the method is applicable to the other types of display devices such as liquid crystal display and digital light processing. We therefore tested the applicability of the standard method to these kinds of new devices and found that the standard method was not valid for these new devices. To overcome this problem, we provide several novel approaches for vision experiments to characterize display devices, based on linear, nonlinear, and hybrid search algorithms. These approaches never assume any internal models of display devices and will therefore be applicable to any display type. The evaluations and comparisons of chromaticity estimation accuracies based on these new methods with those of the standard procedure proved that our proposed methods largely improved the calibration efficiencies for non-CRT devices. Our proposed methods, together with the standard one, have been implemented in a MATLAB-based integrated graphical user interface software named Mcalibrator2. This software can enhance the accuracy of vision experiments and enable more efficient display characterization procedures. The software is now available publicly for free.

  20. A non-device-specific approach to display characterization based on linear, nonlinear, and hybrid search algorithms.

    PubMed

    Ban, Hiroshi; Yamamoto, Hiroki

    2013-01-01

    In almost all of the recent vision experiments, stimuli are controlled via computers and presented on display devices such as cathode ray tubes (CRTs). Display characterization is a necessary procedure for such computer-aided vision experiments. The standard display characterization called "gamma correction" and the following linear color transformation procedure are established for CRT displays and widely used in the current vision science field. However, the standard two-step procedure is based on the internal model of CRT display devices, and there is no guarantee as to whether the method is applicable to the other types of display devices such as liquid crystal display and digital light processing. We therefore tested the applicability of the standard method to these kinds of new devices and found that the standard method was not valid for these new devices. To overcome this problem, we provide several novel approaches for vision experiments to characterize display devices, based on linear, nonlinear, and hybrid search algorithms. These approaches never assume any internal models of display devices and will therefore be applicable to any display type. The evaluations and comparisons of chromaticity estimation accuracies based on these new methods with those of the standard procedure proved that our proposed methods largely improved the calibration efficiencies for non-CRT devices. Our proposed methods, together with the standard one, have been implemented in a MATLAB-based integrated graphical user interface software named Mcalibrator2. This software can enhance the accuracy of vision experiments and enable more efficient display characterization procedures. The software is now available publicly for free. PMID:23729771

  1. Development of a deformable dosimetric phantom to verify dose accumulation algorithms for adaptive radiotherapy

    PubMed Central

    Zhong, Hualiang; Adams, Jeffrey; Glide-Hurst, Carri; Zhang, Hualin; Li, Haisen; Chetty, Indrin J.

    2016-01-01

    Adaptive radiotherapy may improve treatment outcomes for lung cancer patients. Because of the lack of an effective tool for quality assurance, this therapeutic modality is not yet accepted in clinic. The purpose of this study is to develop a deformable physical phantom for validation of dose accumulation algorithms in regions with heterogeneous mass. A three-dimensional (3D) deformable phantom was developed containing a tissue-equivalent tumor and heterogeneous sponge inserts. Thermoluminescent dosimeters (TLDs) were placed at multiple locations in the phantom each time before dose measurement. Doses were measured with the phantom in both the static and deformed cases. The deformation of the phantom was actuated by a motor driven piston. 4D computed tomography images were acquired to calculate 3D doses at each phase using Pinnacle and EGSnrc/DOSXYZnrc. These images were registered using two registration software packages: VelocityAI and Elastix. With the resultant displacement vector fields (DVFs), the calculated 3D doses were accumulated using a mass-and energy congruent mapping method and compared to those measured by the TLDs at four typical locations. In the static case, TLD measurements agreed with all the algorithms by 1.8% at the center of the tumor volume and by 4.0% in the penumbra. In the deformable case, the phantom's deformation was reproduced within 1.1 mm. For the 3D dose calculated by Pinnacle, the total dose accumulated with the Elastix DVF agreed well to the TLD measurements with their differences <2.5% at four measured locations. When the VelocityAI DVF was used, their difference increased up to 11.8%. For the 3D dose calculated by EGSnrc/DOSXYZnrc, the total doses accumulated with the two DVFs were within 5.7% of the TLD measurements which are slightly over the rate of 5% for clinical acceptance. The detector-embedded deformable phantom allows radiation dose to be measured in a dynamic environment, similar to deforming lung tissues, supporting

  2. Development of a deformable dosimetric phantom to verify dose accumulation algorithms for adaptive radiotherapy.

    PubMed

    Zhong, Hualiang; Adams, Jeffrey; Glide-Hurst, Carri; Zhang, Hualin; Li, Haisen; Chetty, Indrin J

    2016-01-01

    Adaptive radiotherapy may improve treatment outcomes for lung cancer patients. Because of the lack of an effective tool for quality assurance, this therapeutic modality is not yet accepted in clinic. The purpose of this study is to develop a deformable physical phantom for validation of dose accumulation algorithms in regions with heterogeneous mass. A three-dimensional (3D) deformable phantom was developed containing a tissue-equivalent tumor and heterogeneous sponge inserts. Thermoluminescent dosimeters (TLDs) were placed at multiple locations in the phantom each time before dose measurement. Doses were measured with the phantom in both the static and deformed cases. The deformation of the phantom was actuated by a motor driven piston. 4D computed tomography images were acquired to calculate 3D doses at each phase using Pinnacle and EGSnrc/DOSXYZnrc. These images were registered using two registration software packages: VelocityAI and Elastix. With the resultant displacement vector fields (DVFs), the calculated 3D doses were accumulated using a mass-and energy congruent mapping method and compared to those measured by the TLDs at four typical locations. In the static case, TLD measurements agreed with all the algorithms by 1.8% at the center of the tumor volume and by 4.0% in the penumbra. In the deformable case, the phantom's deformation was reproduced within 1.1 mm. For the 3D dose calculated by Pinnacle, the total dose accumulated with the Elastix DVF agreed well to the TLD measurements with their differences <2.5% at four measured locations. When the VelocityAI DVF was used, their difference increased up to 11.8%. For the 3D dose calculated by EGSnrc/DOSXYZnrc, the total doses accumulated with the two DVFs were within 5.7% of the TLD measurements which are slightly over the rate of 5% for clinical acceptance. The detector-embedded deformable phantom allows radiation dose to be measured in a dynamic environment, similar to deforming lung tissues, supporting

  3. Utilization of Ancillary Data Sets for Conceptual SMAP Mission Algorithm Development and Product Generation

    NASA Technical Reports Server (NTRS)

    O'Neill, P.; Podest, E.

    2011-01-01

    The planned Soil Moisture Active Passive (SMAP) mission is one of the first Earth observation satellites being developed by NASA in response to the National Research Council's Decadal Survey, Earth Science and Applications from Space: National Imperatives for the Next Decade and Beyond [1]. Scheduled to launch late in 2014, the proposed SMAP mission would provide high resolution and frequent revisit global mapping of soil moisture and freeze/thaw state, utilizing enhanced Radio Frequency Interference (RFI) mitigation approaches to collect new measurements of the hydrological condition of the Earth's surface. The SMAP instrument design incorporates an L-band radar (3 km) and an L band radiometer (40 km) sharing a single 6-meter rotating mesh antenna to provide measurements of soil moisture and landscape freeze/thaw state [2]. These observations would (1) improve our understanding of linkages between the Earth's water, energy, and carbon cycles, (2) benefit many application areas including numerical weather and climate prediction, flood and drought monitoring, agricultural productivity, human health, and national security, (3) help to address priority questions on climate change, and (4) potentially provide continuity with brightness temperature and soil moisture measurements from ESA's SMOS (Soil Moisture Ocean Salinity) and NASA's Aquarius missions. In the planned SMAP mission prelaunch time frame, baseline algorithms are being developed for generating (1) soil moisture products both from radiometer measurements on a 36 km grid and from combined radar/radiometer measurements on a 9 km grid, and (2) freeze/thaw products from radar measurements on a 3 km grid. These retrieval algorithms need a variety of global ancillary data, both static and dynamic, to run the retrieval models, constrain the retrievals, and provide flags for indicating retrieval quality. The choice of which ancillary dataset to use for a particular SMAP product would be based on a number of factors

  4. Development and Evaluation of Vectorised and Multi-Core Event Reconstruction Algorithms within the CMS Software Framework

    NASA Astrophysics Data System (ADS)

    Hauth, T.; Innocente and, V.; Piparo, D.

    2012-12-01

    The processing of data acquired by the CMS detector at LHC is carried out with an object-oriented C++ software framework: CMSSW. With the increasing luminosity delivered by the LHC, the treatment of recorded data requires extraordinary large computing resources, also in terms of CPU usage. A possible solution to cope with this task is the exploitation of the features offered by the latest microprocessor architectures. Modern CPUs present several vector units, the capacity of which is growing steadily with the introduction of new processor generations. Moreover, an increasing number of cores per die is offered by the main vendors, even on consumer hardware. Most recent C++ compilers provide facilities to take advantage of such innovations, either by explicit statements in the programs sources or automatically adapting the generated machine instructions to the available hardware, without the need of modifying the existing code base. Programming techniques to implement reconstruction algorithms and optimised data structures are presented, that aim to scalable vectorization and parallelization of the calculations. One of their features is the usage of new language features of the C++11 standard. Portions of the CMSSW framework are illustrated which have been found to be especially profitable for the application of vectorization and multi-threading techniques. Specific utility components have been developed to help vectorization and parallelization. They can easily become part of a larger common library. To conclude, careful measurements are described, which show the execution speedups achieved via vectorised and multi-threaded code in the context of CMSSW.

  5. Development of an algorithm for heartbeats detection and classification in Holter records based on temporal and morphological features

    NASA Astrophysics Data System (ADS)

    García, A.; Romano, H.; Laciar, E.; Correa, R.

    2011-12-01

    In this work a detection and classification algorithm for heartbeats analysis in Holter records was developed. First, a QRS complexes detector was implemented and their temporal and morphological characteristics were extracted. A vector was built with these features; this vector is the input of the classification module, based on discriminant analysis. The beats were classified in three groups: Premature Ventricular Contraction beat (PVC), Atrial Premature Contraction beat (APC) and Normal Beat (NB). These beat categories represent the most important groups of commercial Holter systems. The developed algorithms were evaluated in 76 ECG records of two validated open-access databases "arrhythmias MIT BIH database" and "MIT BIH supraventricular arrhythmias database". A total of 166343 beats were detected and analyzed, where the QRS detection algorithm provides a sensitivity of 99.69 % and a positive predictive value of 99.84 %. The classification stage gives sensitivities of 97.17% for NB, 97.67% for PCV and 92.78% for APC.

  6. The Development of Educational Specifications. School Planning Guide--Series 3R.

    ERIC Educational Resources Information Center

    Pearson, Douglas L.

    This publication has been developed to assist local boards of education, superintendents, and their staffs in the organization and development of educational specifications. Part 1 presents a conceptual and operating primer on what educational specifications are--the purpose, the process, the personnel, and the product. Part 2 is designed to…

  7. Development of adaptive noise reduction filter algorithm for pediatric body images in a multi-detector CT

    NASA Astrophysics Data System (ADS)

    Nishimaru, Eiji; Ichikawa, Katsuhiro; Okita, Izumi; Ninomiya, Yuuji; Tomoshige, Yukihiro; Kurokawa, Takehiro; Ono, Yutaka; Nakamura, Yuko; Suzuki, Masayuki

    2008-03-01

    Recently, several kinds of post-processing image filters which reduce the noise of computed tomography (CT) images have been proposed. However, these image filters are mostly for adults. Because these are not very effective in small (< 20 cm) display fields of view (FOV), we cannot use them for pediatric body images (e.g., premature babies and infant children). We have developed a new noise reduction filter algorithm for pediatric body CT images. This algorithm is based on a 3D post-processing in which the output pixel values are calculated by nonlinear interpolation in z-directions on original volumetric-data-sets. This algorithm does not need the in-plane (axial plane) processing, so the spatial resolution does not change. From the phantom studies, our algorithm could reduce SD up to 40% without affecting the spatial resolution of x-y plane and z-axis, and improved the CNR up to 30%. This newly developed filter algorithm will be useful for the diagnosis and radiation dose reduction of the pediatric body CT images.

  8. Development, analysis, and testing of robust nonlinear guidance algorithms for space applications

    NASA Astrophysics Data System (ADS)

    Wibben, Daniel R.

    This work focuses on the analysis and application of various nonlinear, autonomous guidance algorithms that utilize sliding mode control to guarantee system stability and robustness. While the basis for the algorithms has previously been proposed, past efforts barely scratched the surface of the theoretical details and implications of these algorithms. Of the three algorithms that are the subject of this research, two are directly derived from optimal control theory and augmented using sliding mode control. Analysis of the derivation of these algorithms has shown that they are two different representations of the same result, one of which uses a simple error state model (Delta r/Deltav) and the other uses definitions of the zero-effort miss and zero-effort velocity (ZEM/ZEV) values. By investigating the dynamics of the defined sliding surfaces and their impact on the overall system, many implications have been deduced regarding the behavior of these systems which are noted to feature time-varying sliding modes. A formal finite time stability analysis has also been performed to theoretically demonstrate that the algorithms globally stabilize the system in finite time in the presence of perturbations and unmodeled dynamics. The third algorithm that has been subject to analysis is derived from a direct application of higher-order sliding mode control and Lyapunov stability analysis without consideration of optimal control theory and has been named the Multiple Sliding Surface Guidance (MSSG). Via use of reinforcement learning methods an optimal set of gains has been found that make the guidance perform similarly to an open-loop optimal solution. Careful side-by-side inspection of the MSSG and Optimal Sliding Guidance (OSG) algorithms has shown some striking similarities. A detailed comparison of the algorithms has demonstrated that though they are nearly indistinguishable at first glance, there are some key differences between the two algorithms and they are indeed

  9. Development of Variational Guiding Center Algorithms for Parallel Calculations in Experimental Magnetic Equilibria

    SciTech Connect

    Ellison, C. Leland; Finn, J. M.; Qin, H.; Tang, William M.

    2014-10-01

    Structure-preserving algorithms obtained via discrete variational principles exhibit strong promise for the calculation of guiding center test particle trajectories. The non-canonical Hamiltonian structure of the guiding center equations forms a novel and challenging context for geometric integration. To demonstrate the practical relevance of these methods, a prototypical variational midpoint algorithm is applied to an experimental magnetic equilibrium. The stability characteristics, conservation properties, and implementation requirements associated with the variational algorithms are addressed. Furthermore, computational run time is reduced for large numbers of particles by parallelizing the calculation on GPU hardware.

  10. Development of an algorithm to meaningfully interpret patterns in street-level methane concentrations

    NASA Astrophysics Data System (ADS)

    von Fischer, Joseph; Salo, Jessica; Griebenow, Claire; Bischak, Linde; Cooley, Daniel; Ham, Jay; Schumacher, Russ

    2013-04-01

    Methane (CH4) is an important greenhouse gas that has 70x greater heat forcing per molecule than CO2 over its ~10 year atmospheric residence time. Given this short residence time, there has been a surge of interest in mitigating anthropogenic CH4 sources because they will have a more immediate effect on warming rates. Recent observations of CH4 concentrations around the city of Boston reveal that natural gas distribution systems can have a very large number of leaks. However, there are a number of conceptual and practical challenges associated with interpretation of CH4 data gathered by car at the street level. In this presentation, we detail our efforts to develop an "algorithm" or set of standard practices for interpreting these patterns based on our own findings. At the most basic, we have evaluated approaches for vehicle driving patterns and management of the raw data. We also identify techniques for evaluating data quality and discerning when elevated CH4 may be due to other vehicles (e.g., CNG-powered city buses). We then compare methods for identifying "peaks" in CH4 concentration, and we discuss several approaches for relating concentration, space and wind data to emission rates. Finally, we provide some considerations for how the data from individual peaks might be aggregated to larger spatial scales.

  11. Development and evaluation of a new contoured cushion system with an optimized normalization algorithm.

    PubMed

    Li, Sujiao; Zhang, Zhengxiang; Wang, Jue

    2014-01-01

    Prevention of pressure sores remains a significant problem confronting spinal cord injury patients and the elderly with limited mobility. One vital aspect of this subject concerns the development of cushions to decrease pressure ulcers for seated patients, particularly those bound by wheelchairs. Here, we present a novel cushion system that employs interface pressure distribution between the cushion and the buttocks to design custom contoured foam cushion. An optimized normalization algorithm was proposed, with which interface pressure distribution was transformed into the carving depth of foam cushions according to the biomechanical characteristics of the foam. The shape and pressure-relief performance of the custom contoured foam cushions was investigated. The outcomes showed that the contoured shape of personalized cushion matched the buttock contour very well. Moreover, the custom contoured cushion could alleviate pressure under buttocks and increase subjective comfort and stability significantly. Furthermore, the fabricating method not only decreased the unit production cost but also simplified the procedure for manufacturing. All in all, this prototype seat cushion would be an effective and economical way to prevent pressure ulcers. PMID:25227054

  12. Development and Implementation of Image-based Algorithms for Measurement of Deformations in Material Testing

    PubMed Central

    Barazzetti, Luigi; Scaioni, Marco

    2010-01-01

    This paper presents the development and implementation of three image-based methods used to detect and measure the displacements of a vast number of points in the case of laboratory testing on construction materials. Starting from the needs of structural engineers, three ad hoc tools for crack measurement in fibre-reinforced specimens and 2D or 3D deformation analysis through digital images were implemented and tested. These tools make use of advanced image processing algorithms and can integrate or even substitute some traditional sensors employed today in most laboratories. In addition, the automation provided by the implemented software, the limited cost of the instruments and the possibility to operate with an indefinite number of points offer new and more extensive analysis in the field of material testing. Several comparisons with other traditional sensors widely adopted inside most laboratories were carried out in order to demonstrate the accuracy of the implemented software. Implementation details, simulations and real applications are reported and discussed in this paper. PMID:22163612

  13. Development of an algorithm to improve the accuracy of dose delivery in Gamma Knife radiosurgery

    NASA Astrophysics Data System (ADS)

    Cernica, George Dumitru

    2007-12-01

    Gamma Knife stereotactic radiosurgery has demonstrated decades of successful treatments. Despite its high spatial accuracy, the Gamma Knife's planning software, GammaPlan, uses a simple exponential as the TPR curve for all four collimator sizes, and a skull scaling device to acquire ruler measurements to interpolate a threedimensional spline to model the patient's skull. The consequences of these approximations have not been previously investigated. The true TPR curves of the four collimators were measured by blocking 200 of the 201 sources with steel plugs. Additional attenuation was provided through the use of a 16 cm tungsten sphere, designed to enable beamlet measurements along one axis. TPR, PDD, and beamlet profiles were obtained using both an ion chamber and GafChromic EBT film for all collimators. Additionally, an in-house planning algorithm able to calculate the contour of the skull directly from an image set and implement the measured beamlet data in shot time calculations was developed. Clinical and theoretical Gamma Knife cases were imported into our algorithm. The TPR curves showed small deviations from a simple exponential curve, with average discrepancies under 1%, but with a maximum discrepancy of 2% found for the 18 mm collimator beamlet at shallow depths. The consequences on the PDD of the of the beamlets were slight, with a maximum of 1.6% found with the 18 mm collimator beamlet. Beamlet profiles of the 4 mm, 8 mm, and 14 mm showed some underestimates of the off-axis ratio near the shoulders (up to 10%). The toes of the profiles were underestimated for all collimators, with differences up to 7%. Shot times were affected by up to 1.6% due to TPR differences, but clinical cases showed deviations by no more than 0.5%. The beamlet profiles affected the dose calculations more significantly, with shot time calculations differing by as much as 0.8%. The skull scaling affected the shot time calculations the most significantly, with differences of up to 5

  14. Development of Water Quality Parameter Retrieval Algorithms for Estimating Total Suspended Solids and Chlorophyll-A Concentration Using LANDSAT-8 Imagery at Poteran Island Water

    NASA Astrophysics Data System (ADS)

    Laili, N.; Arafah, F.; Jaelani, L. M.; Subehi, L.; Pamungkas, A.; Koenhardono, E. S.; Sulisetyono, A.

    2015-10-01

    The Landsat-8 satellite imagery is now highly developed compares to the former of Landsat projects. Both land and water area are possibly mapped using this satellite sensor. Considerable approaches have been made to obtain a more accurate method for extracting the information of water area from the images. It is difficult to generate an accurate water quality information from Landsat images by using some existing algorithm provided by researchers. Even though, those algorithms have been validated in some water area, but the dynamic changes and the specific characteristics of each area make it necessary to get them evaluated and validated over another water area. This paper aims to make a new algorithm by correlating the measured and estimated TSS and Chla concentration. We collected in-situ remote sensing reflectance, TSS and Chl-a concentration in 9 stations surrounding the Poteran islands as well as Landsat 8 data on the same acquisition time of April 22, 2015. The regression model for estimating TSS produced high accuracy with determination coefficient (R2), NMAE and RMSE of 0.709; 9.67 % and 1.705 g/m3 respectively. Whereas, Chla retrieval algorithm produced R2 of 0.579; NMAE of 10.40% and RMSE of 51.946 mg/m3. By implementing these algorithms to Landsat 8 image, the estimated water quality parameters over Poteran island water ranged from 9.480 to 15.801 g/m3 and 238.546 to 346.627 mg/m3 for TSS and Chl-a respectively.

  15. 24 CFR 92.301 - Project-specific assistance to community housing development organizations.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 24 Housing and Urban Development 1 2011-04-01 2011-04-01 false Project-specific assistance to community housing development organizations. 92.301 Section 92.301 Housing and Urban Development Office of the Secretary, Department of Housing and Urban Development HOME INVESTMENT PARTNERSHIPS...

  16. 24 CFR 92.301 - Project-specific assistance to community housing development organizations.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 24 Housing and Urban Development 1 2010-04-01 2010-04-01 false Project-specific assistance to community housing development organizations. 92.301 Section 92.301 Housing and Urban Development Office of the Secretary, Department of Housing and Urban Development HOME INVESTMENT PARTNERSHIPS...

  17. The Development of Several Electromagnetic Monitoring Strategies and Algorithms for Validating Pre-Earthquake Electromagnetic Signals

    NASA Astrophysics Data System (ADS)

    Bleier, T. E.; Dunson, J. C.; Roth, S.; Mueller, S.; Lindholm, C.; Heraud, J. A.

    2012-12-01

    QuakeFinder, a private research group in California, reports on the development of a 100+ station network consisting of 3-axis induction magnetometers, and air conductivity sensors to collect and characterize pre-seismic electromagnetic (EM) signals. These signals are combined with daily Infra Red signals collected from the GOES weather satellite infrared (IR) instrument to compare and correlate with the ground EM signals, both from actual earthquakes and boulder stressing experiments. This presentation describes the efforts QuakeFinder has undertaken to automatically detect these pulse patterns using their historical data as a reference, and to develop other discriminative algorithms that can be used with air conductivity sensors, and IR instruments from the GOES satellites. The overall big picture results of the QuakeFinder experiment are presented. In 2007, QuakeFinder discovered the occurrence of strong uni-polar pulses in their magnetometer coil data that increased in tempo dramatically prior to the M5.1 earthquake at Alum Rock, California. Suggestions that these pulses might have been lightning or power-line arcing did not fit with the data actually recorded as was reported in Bleier [2009]. Then a second earthquake occurred near the same site on January 7, 2010 as was reported in Dunson [2011], and the pattern of pulse count increases before the earthquake occurred similarly to the 2007 event. There were fewer pulses, and the magnitude of them was decreased, both consistent with the fact that the earthquake was smaller (M4.0 vs M5.4) and farther away (7Km vs 2km). At the same time similar effects were observed at the QuakeFinder Tacna, Peru site before the May 5th, 2010 M6.2 earthquake and a cluster of several M4-5 earthquakes.

  18. Development of effluent removal prediction model efficiency in septic sludge treatment plant through clonal selection algorithm.

    PubMed

    Ting, Sie Chun; Ismail, A R; Malek, M A

    2013-11-15

    This study aims at developing a novel effluent removal management tool for septic sludge treatment plants (SSTP) using a clonal selection algorithm (CSA). The proposed CSA articulates the idea of utilizing an artificial immune system (AIS) to identify the behaviour of the SSTP, that is, using a sequence batch reactor (SBR) technology for treatment processes. The novelty of this study is the development of a predictive SSTP model for effluent discharge adopting the human immune system. Septic sludge from the individual septic tanks and package plants will be desuldged and treated in SSTP before discharging the wastewater into a waterway. The Borneo Island of Sarawak is selected as the case study. Currently, there are only two SSTPs in Sarawak, namely the Matang SSTP and the Sibu SSTP, and they are both using SBR technology. Monthly effluent discharges from 2007 to 2011 in the Matang SSTP are used in this study. Cross-validation is performed using data from the Sibu SSTP from April 2011 to July 2012. Both chemical oxygen demand (COD) and total suspended solids (TSS) in the effluent were analysed in this study. The model was validated and tested before forecasting the future effluent performance. The CSA-based SSTP model was simulated using MATLAB 7.10. The root mean square error (RMSE), mean absolute percentage error (MAPE), and correction coefficient (R) were used as performance indexes. In this study, it was found that the proposed prediction model was successful up to 84 months for the COD and 109 months for the TSS. In conclusion, the proposed CSA-based SSTP prediction model is indeed beneficial as an engineering tool to forecast the long-run performance of the SSTP and in turn, prevents infringement of future environmental balance in other towns in Sarawak.

  19. Molecular descriptor subset selection in theoretical peptide quantitative structure-retention relationship model development using nature-inspired optimization algorithms.

    PubMed

    Žuvela, Petar; Liu, J Jay; Macur, Katarzyna; Bączek, Tomasz

    2015-10-01

    In this work, performance of five nature-inspired optimization algorithms, genetic algorithm (GA), particle swarm optimization (PSO), artificial bee colony (ABC), firefly algorithm (FA), and flower pollination algorithm (FPA), was compared in molecular descriptor selection for development of quantitative structure-retention relationship (QSRR) models for 83 peptides that originate from eight model proteins. The matrix with 423 descriptors was used as input, and QSRR models based on selected descriptors were built using partial least squares (PLS), whereas root mean square error of prediction (RMSEP) was used as a fitness function for their selection. Three performance criteria, prediction accuracy, computational cost, and the number of selected descriptors, were used to evaluate the developed QSRR models. The results show that all five variable selection methods outperform interval PLS (iPLS), sparse PLS (sPLS), and the full PLS model, whereas GA is superior because of its lowest computational cost and higher accuracy (RMSEP of 5.534%) with a smaller number of variables (nine descriptors). The GA-QSRR model was validated initially through Y-randomization. In addition, it was successfully validated with an external testing set out of 102 peptides originating from Bacillus subtilis proteomes (RMSEP of 22.030%). Its applicability domain was defined, from which it was evident that the developed GA-QSRR exhibited strong robustness. All the sources of the model's error were identified, thus allowing for further application of the developed methodology in proteomics.

  20. Successive smoothing algorithm for constructing the semiempirical model developed at ONERA to predict unsteady aerodynamic forces. [aeroelasticity in helicopters

    NASA Technical Reports Server (NTRS)

    Petot, D.; Loiseau, H.

    1982-01-01

    Unsteady aerodynamic methods adopted for the study of aeroelasticity in helicopters are considered with focus on the development of a semiempirical model of unsteady aerodynamic forces acting on an oscillating profile at high incidence. The successive smoothing algorithm described leads to the model's coefficients in a very satisfactory manner.

  1. Detection of fruit-fly infestation in olives using X-ray imaging: Algorithm development and prospects

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An algorithm using a Bayesian classifier was developed to automatically detect olive fruit fly infestations in x-ray images of olives. The data set consisted of 249 olives with various degrees of infestation and 161 non-infested olives. Each olive was x-rayed on film and digital images were acquired...

  2. A preliminary report on the development of MATLAB tensor classes for fast algorithm prototyping.

    SciTech Connect

    Bader, Brett William; Kolda, Tamara Gibson

    2004-07-01

    We describe three MATLAB classes for manipulating tensors in order to allow fast algorithm prototyping. A tensor is a multidimensional or N-way array. We present a tensor class for manipulating tensors which allows for tensor multiplication and 'matricization.' We have further added two classes for representing tensors in decomposed format: cp{_}tensor and tucker{_}tensor. We demonstrate the use of these classes by implementing several algorithms that have appeared in the literature.

  3. The development of algorithms for parallel knowledge discovery using graphics accelerators

    NASA Astrophysics Data System (ADS)

    Zieliński, Paweł; Mulawka, Jan

    2011-10-01

    The paper broaches topics of selected knowledge discovery algorithms. Different implementations have been verified on parallel platforms, including graphics accelerators using CUDA technology, multi-core microprocessors using OpenMP and many graphics accelerators. Results of investigations have been compared in terms of performance and scalability. Different types of data representation were also tested. The possibilities of both platforms, using the classification algorithms: the k-nearest neighbors, support vector machines and logistic regression are discussed.

  4. Preliminary Development and Evaluation of Lightning Jump Algorithms for the Real-Time Detection of Severe Weather

    NASA Technical Reports Server (NTRS)

    Schultz, Christopher J.; Petersen, Walter A.; Carey, Lawrence D.

    2009-01-01

    Previous studies have demonstrated that rapid increases in total lightning activity (intracloud + cloud-to-ground) are often observed tens of minutes in advance of the occurrence of severe weather at the ground. These rapid increases in lightning activity have been termed "lightning jumps." Herein, we document a positive correlation between lightning jumps and the manifestation of severe weather in thunderstorms occurring across the Tennessee Valley and Washington D.C. A total of 107 thunderstorms were examined in this study, with 69 of the 107 thunderstorms falling into the category of non-severe, and 38 into the category of severe. From the dataset of 69 isolated non-severe thunderstorms, an average peak 1 minute flash rate of 10 flashes/min was determined. A variety of severe thunderstorm types were examined for this study including an MCS, MCV, tornadic outer rainbands of tropical remnants, supercells, and pulse severe thunderstorms. Of the 107 thunderstorms, 85 thunderstorms (47 non-severe, 38 severe) from the Tennessee Valley and Washington D.C tested 6 lightning jump algorithm configurations (Gatlin, Gatlin 45, 2(sigma), 3(sigma), Threshold 10, and Threshold 8). Performance metrics for each algorithm were then calculated, yielding encouraging results from the limited sample of 85 thunderstorms. The 2(sigma) lightning jump algorithm had a high probability of detection (POD; 87%), a modest false alarm rate (FAR; 33%), and a solid Heidke Skill Score (HSS; 0.75). A second and more simplistic lightning jump algorithm named the Threshold 8 lightning jump algorithm also shows promise, with a POD of 81% and a FAR of 41%. Average lead times to severe weather occurrence for these two algorithms were 23 minutes and 20 minutes, respectively. The overall goal of this study is to advance the development of an operationally-applicable jump algorithm that can be used with either total lightning observations made from the ground, or in the near future from space using the

  5. Developing JSequitur to Study the Hierarchical Structure of Biological Sequences in a Grammatical Inference Framework of String Compression Algorithms.

    PubMed

    Galbadrakh, Bulgan; Lee, Kyung-Eun; Park, Hyun-Seok

    2012-12-01

    Grammatical inference methods are expected to find grammatical structures hidden in biological sequences. One hopes that studies of grammar serve as an appropriate tool for theory formation. Thus, we have developed JSequitur for automatically generating the grammatical structure of biological sequences in an inference framework of string compression algorithms. Our original motivation was to find any grammatical traits of several cancer genes that can be detected by string compression algorithms. Through this research, we could not find any meaningful unique traits of the cancer genes yet, but we could observe some interesting traits in regards to the relationship among gene length, similarity of sequences, the patterns of the generated grammar, and compression rate.

  6. End-to-End Design, Development and Testing of GOES-R Level 1 and 2 Algorithms

    NASA Astrophysics Data System (ADS)

    Zaccheo, T.; Copeland, A.; Steinfelt, E.; Van Rompay, P.; Werbos, A.

    2012-12-01

    GOES-R is the next generation of the National Oceanic and Atmospheric Administration's (NOAA) Geostationary Operational Environmental Satellite (GOES) System, and it represents a new technological era in operational geostationary environmental satellite systems. GOES-R will provide advanced products, based on government-supplied algorithms, which describe the state of the atmosphere, land, and oceans over the Western Hemisphere. The Harris GOES-R Core Ground Segment (GS) Team will provide the ground processing software and infrastructure needed to produce and distribute these data products. As part of this effort, new or updated Level 1b and Level 2+ algorithms will be deployed in the GOES-R Product Generation (PG) Element. In this work, we describe the general approach currently being employed to migrate these Level 1b (L1b) and Level 2+ (L2+) GOES-R PG algorithms from government-provided scientific descriptions to their implementation as integrated software, and provide an overview of how Product Generation software works with the other elements of the Ground Segment to produce Level 1/Level 2+ end-products. In general, GOES-R L1b algorithms ingest reformatted raw sensor data and ancillary information to produce geo-located GOES-R L1b data, and GOES-R L2+ algorithms ingest L1b data and other ancillary/auxiliary/intermediate information to produce L2+ products such as aerosol optical depth, rainfall rate, derived motion winds, and snow cover. In this presentation we provide an overview of the Algorithm development life cycle, the common Product Generation software architecture, and the common test strategies used to verify/validate the scientific implementation. This work will highlight the Software Integration and Test phase of the software life-cycle and the suite of automated test/analysis tools developed to insure the implemented algorithms meet desired reproducibility. As part of this discussion we will summarize the results of our algorithm testing to date

  7. Regression methods for developing QSAR and QSPR models to predict compounds of specific pharmacodynamic, pharmacokinetic and toxicological properties.

    PubMed

    Yap, C W; Li, H; Ji, Z L; Chen, Y Z

    2007-11-01

    Quantitative structure-activity relationship (QSAR) and quantitative structure-property relationship (QSPR) models have been extensively used for predicting compounds of specific pharmacodynamic, pharmacokinetic, or toxicological property from structure-derived physicochemical and structural features. These models can be developed by using various regression methods including conventional approaches (multiple linear regression and partial least squares) and more recently explored genetic (genetic function approximation) and machine learning (k-nearest neighbour, neural networks, and support vector regression) approaches. This article describes the algorithms of these methods, evaluates their advantages and disadvantages, and discusses the application potential of the recently explored methods. Freely available online and commercial software for these regression methods and the areas of their applications are also presented. PMID:18045213

  8. Development of an Outdoor Temperature Based Control Algorithm for Residential Mechanical Ventilation Control

    SciTech Connect

    Less, Brennan; Walker, Iain; Tang, Yihuan

    2014-08-01

    The Incremental Ventilation Energy (IVE) model developed in this study combines the output of simple air exchange models with a limited set of housing characteristics to estimate the associated change in energy demand of homes. The IVE model was designed specifically to enable modellers to use existing databases of housing characteristics to determine the impact of ventilation policy change on a population scale. The IVE model estimates of energy change when applied to US homes with limited parameterisation are shown to be comparable to the estimates of a well-validated, complex residential energy model.

  9. Planning fuel-conservative descents in an airline environmental using a small programmable calculator: Algorithm development and flight test results

    NASA Technical Reports Server (NTRS)

    Knox, C. E.; Vicroy, D. D.; Simmon, D. A.

    1985-01-01

    A simple, airborne, flight-management descent algorithm was developed and programmed into a small programmable calculator. The algorithm may be operated in either a time mode or speed mode. The time mode was designed to aid the pilot in planning and executing a fuel-conservative descent to arrive at a metering fix at a time designated by the air traffic control system. The speed model was designed for planning fuel-conservative descents when time is not a consideration. The descent path for both modes was calculated for a constant with considerations given for the descent Mach/airspeed schedule, gross weight, wind, wind gradient, and nonstandard temperature effects. Flight tests, using the algorithm on the programmable calculator, showed that the open-loop guidance could be useful to airline flight crews for planning and executing fuel-conservative descents.

  10. Planning fuel-conservative descents in an airline environmental using a small programmable calculator: algorithm development and flight test results

    SciTech Connect

    Knox, C.E.; Vicroy, D.D.; Simmon, D.A.

    1985-05-01

    A simple, airborne, flight-management descent algorithm was developed and programmed into a small programmable calculator. The algorithm may be operated in either a time mode or speed mode. The time mode was designed to aid the pilot in planning and executing a fuel-conservative descent to arrive at a metering fix at a time designated by the air traffic control system. The speed model was designed for planning fuel-conservative descents when time is not a consideration. The descent path for both modes was calculated for a constant with considerations given for the descent Mach/airspeed schedule, gross weight, wind, wind gradient, and nonstandard temperature effects. Flight tests, using the algorithm on the programmable calculator, showed that the open-loop guidance could be useful to airline flight crews for planning and executing fuel-conservative descents.

  11. Development of a blended-control, predictor-corrector guidance algorithm for a crewed Mars aerocapture vehicle

    NASA Astrophysics Data System (ADS)

    Jits, Roman Yuryevich

    A robust blended-control guidance system for a crewed Mars aerocapture vehicle is developed. The key features of its guidance algorithm are the use of the both bank-angle and angle-of-attack modulation to control the aerobraking vehicle, and the use of multiple controls (sequenced pairs of bank-angles and angles-of-attack) within its numeric predictor-corrector targeting routine. The guidance algorithm macrologic is based on extensive open loop trajectory analyses, described in the present research, which led to the selection of a blended-control scheme. A heuristic approach to recover from situations where no converged guidance solution could be found by the numeric predictor-corrector is implemented in the guidance algorithm, and has been successfully demonstrated in a large number of test runs. In this research both the outer and inner loop of the guidance and control system employ the POST (Program to Optimize Simulated Trajectories) computer code as the basic simulation module. At each guidance update, the inner loop solves the rigorous three-dimensional equations of motion and computes the control (bank-angle and angle-of-attack) sequence that is required to meet the required atmospheric exit conditions. Throughout the aerocapture trajectory, the guidance algorithm modifies this control sequence computed by the inner loop, and generates commanded controls for the vehicle, which, when implemented by the outer loop, meet an imposed g-load constraint of 5 Earth g's and compensate for unexpected off-nominal conditions. This blended-control, predictor-corrector guidance algorithm has been successfully developed, implemented and tested and has been shown to be capable of meeting the prescribed g-load constraint and guiding the vehicle to the desired exit conditions for a range of off-nominal factors much wider than those which could be accommodated by prior algorithms and bank-angle-only guidance.

  12. Establishment of an Algorithm Using prM/E- and NS1-Specific IgM Antibody-Capture Enzyme-Linked Immunosorbent Assays in Diagnosis of Japanese Encephalitis Virus and West Nile Virus Infections in Humans

    PubMed Central

    Galula, Jedhan U.; Chang, Gwong-Jen J.

    2015-01-01

    The front-line assay for the presumptive serodiagnosis of acute Japanese encephalitis virus (JEV) and West Nile virus (WNV) infections is the premembrane/envelope (prM/E)-specific IgM antibody-capture enzyme-linked immunosorbent assay (MAC-ELISA). Due to antibody cross-reactivity, MAC-ELISA-positive samples may be confirmed with a time-consuming plaque reduction neutralization test (PRNT). In the present study, we applied a previously developed anti-nonstructural protein 1 (NS1)-specific MAC-ELISA (NS1-MAC-ELISA) on archived acute-phase serum specimens from patients with confirmed JEV and WNV infections and compared the results with prM/E containing virus-like particle-specific MAC-ELISA (VLP-MAC-ELISA). Paired-receiver operating characteristic (ROC) curve analyses revealed no statistical differences in the overall assay performances of the VLP- and NS1-MAC-ELISAs. The two methods had high sensitivities of 100% but slightly lower specificities that ranged between 80% and 100%. When the NS1-MAC-ELISA was used to confirm positive results in the VLP-MAC-ELISA, the specificity of serodiagnosis, especially for JEV infection, was increased to 90% when applied in areas where JEV cocirculates with WNV, or to 100% when applied in areas that were endemic for JEV. The results also showed that using multiple antigens could resolve the cross-reactivity in the assays. Significantly higher positive-to-negative (P/N) values were consistently obtained with the homologous antigens than those with the heterologous antigens. JEV or WNV was reliably identified as the currently infecting flavivirus by a higher ratio of JEV-to-WNV P/N values or vice versa. In summary of the above-described results, the diagnostic algorithm combining the use of multiantigen VLP- and NS1-MAC-ELISAs was developed and can be practically applied to obtain a more specific and reliable result for the serodiagnosis of JEV and WNV infections without the need for PRNT. The developed algorithm should provide great

  13. Diagnosis and treatment of acute ankle injuries: development of an evidence-based algorithm

    PubMed Central

    Polzer, Hans; Kanz, Karl Georg; Prall, Wolf Christian; Haasters, Florian; Ockert, Ben; Mutschler, Wolf; Grote, Stefan

    2011-01-01

    Acute ankle injuries are among the most common injuries in emergency departments. However, there are still no standardized examination procedures or evidence-based treatment. Therefore, the aim of this study was to systematically search the current literature, classify the evidence, and develop an algorithm for the diagnosis and treatment of acute ankle injuries. We systematically searched PubMed and the Cochrane Database for randomized controlled trials, meta-analyses, systematic reviews or, if applicable, observational studies and classified them according to their level of evidence. According to the currently available literature, the following recommendations have been formulated: i) the Ottawa Ankle/Foot Rule should be applied in order to rule out fractures; ii) physical examination is sufficient for diagnosing injuries to the lateral ligament complex; iii) classification into stable and unstable injuries is applicable and of clinical importance; iv) the squeeze-, crossed leg- and external rotation test are indicative for injuries of the syndesmosis; v) magnetic resonance imaging is recommended to verify injuries of the syndesmosis; vi) stable ankle sprains have a good prognosis while for unstable ankle sprains, conservative treatment is at least as effective as operative treatment without the related possible complications; vii) early functional treatment leads to the fastest recovery and the least rate of reinjury; viii) supervised rehabilitation reduces residual symptoms and re-injuries. Taken these recommendations into account, we present an applicable and evidence-based, step by step, decision pathway for the diagnosis and treatment of acute ankle injuries, which can be implemented in any emergency department or doctor's practice. It provides quality assurance for the patient and promotes confidence in the attending physician. PMID:22577506

  14. Development of an Algorithm for MODIS and VIIRS Cloud Optical Property Data Record Continuity

    NASA Astrophysics Data System (ADS)

    Meyer, K.; Platnick, S. E.; Ackerman, S. A.; Heidinger, A. K.; Holz, R.; Wind, G.; Amarasinghe, N.; Marchant, B.

    2015-12-01

    The launch of Suomi NPP in the fall of 2011 began the next generation of U.S. operational polar orbiting environmental observations. Similar to MODIS, the VIIRS imager provides visible through IR observations at moderate spatial resolution with a 1330 LT equatorial crossing consistent with MODIS on the Aqua platform. However, unlike MODIS, VIIRS lacks key water vapor and CO2 absorbing channels used by the MODIS cloud algorithms for high cloud detection and cloud-top property retrievals. In addition, there is a significant change in the spectral location of the 2.1μm shortwave-infrared channel used by MODIS for cloud optical/microphysical retrievals. Given the instrument differences between MODIS EOS and VIIRS S-NPP/JPSS, we discuss our adopted method for merging the 15+ year MODIS observational record with VIIRS in order to generate cloud optical property data record continuity across the observing systems. The optical property retrieval code uses heritage algorithms that produce the existing MODIS cloud optical and microphysical properties product (MOD06). As explained in other presentations submitted to this session, the NOAA AWG/CLAVR-x cloud-top property algorithm and a common MODIS-VIIRS cloud mask feed into the optical property algorithm to account for the different channel sets of the two imagers. Data granule and aggregated examples for the current version of the algorithm will be shown.

  15. Algorithm and code development for unsteady three-dimensional Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Obayashi, Shigeru

    1991-01-01

    A streamwise upwind algorithm for solving the unsteady 3-D Navier-Stokes equations was extended to handle the moving grid system. It is noted that the finite volume concept is essential to extend the algorithm. The resulting algorithm is conservative for any motion of the coordinate system. Two extensions to an implicit method were considered and the implicit extension that makes the algorithm computationally efficient is implemented into Ames's aeroelasticity code, ENSAERO. The new flow solver has been validated through the solution of test problems. Test cases include three-dimensional problems with fixed and moving grids. The first test case shown is an unsteady viscous flow over an F-5 wing, while the second test considers the motion of the leading edge vortex as well as the motion of the shock wave for a clipped delta wing. The resulting algorithm has been implemented into ENSAERO. The upwind version leads to higher accuracy in both steady and unsteady computations than the previously used central-difference method does, while the increase in the computational time is small.

  16. Interpreting a Community of Practice Perspective in Discipline-Specific Professional Development in Higher Education

    ERIC Educational Resources Information Center

    Blanton, Maria L.; Stylianou, Despina A.

    2009-01-01

    Through this study we explored a community of practice framework applied to faculty professional development at a mid-size state university in order to examine the issues unique to discipline-specific professional development in higher education. Through content-focused professional development activities conducted by the authors, several key…

  17. Development and characterisation of a state-of-the-art GOME-2 formaldehyde air-mass factor algorithm

    NASA Astrophysics Data System (ADS)

    Hewson, W.; Barkley, M. P.; Gonzalez Abad, G.; Bösch, H.; Kurosu, T.; Spurr, R.

    2015-01-01

    Space-borne observations of formaldehyde (HCHO) are frequently used to derive surface emissions of isoprene, an important biogenic volatile organic compound. The conversion of retrieved HCHO slant column concentrations from satellite line of sight measurements to vertical columns is determined through application of an air mass factor (AMF), accounting for instrument viewing geometry, radiative transfer, and vertical profile of the absorber in the atmosphere. This step in the trace gas retrieval is subject to large errors. This work presents the AMF algorithm in use at the University of Leicester (UoL), which introduces scene specific variables into a per-observation full radiative transfer AMF calculation, including increasing spatial resolution of key environmental parameter databases, input variable area weighting, instrument specific scattering weight calculation, and inclusion of an ozone vertical profile climatology. Application of these updates to HCHO slant columns from the GOME-2 instrument is shown to typically adjust the AMF by ±10%, compared to a~reference algorithm without these advanced parameterisations. Furthermore, the new UoL algorithm also incorporates a full radiative transfer error calculation for each scene to help characterise AMF uncertainties. Global median AMF errors are typically 50-60%, and are dominated by uncertainties in the HCHO profile shape and its corresponding seasonal variation.

  18. 15 CFR 9.4 - Development of voluntary energy conservation specifications.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... conservation specifications. 9.4 Section 9.4 Commerce and Foreign Trade Office of the Secretary of Commerce... CONSERVATION § 9.4 Development of voluntary energy conservation specifications. (a) The Secretary in... Energy Conservation Mark specified in § 9.7. (4) Conditions for the participation of manufacturers in...

  19. Study of solid rocket motors for a space shuttle booster. Appendix B: Prime item development specification

    NASA Technical Reports Server (NTRS)

    1972-01-01

    The specifications for the performance, design, development, and test requirements of the P2-156, S3-156, and S6-120 space shuttle booster solid rocket motors are presented. The applicable documents which form a part of the specifications are listed.

  20. 15 CFR 16.5 - Development of performance information labeling specifications.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... publish a proposed Performance Information Labeling Specification in the Federal Register with a notice... 15 Commerce and Foreign Trade 1 2010-01-01 2010-01-01 false Development of performance information labeling specifications. 16.5 Section 16.5 Commerce and Foreign Trade Office of the Secretary of...

  1. Towards developing robust algorithms for solving partial differential equations on MIMD machines

    NASA Technical Reports Server (NTRS)

    Saltz, J. H.; Naik, V. K.

    1985-01-01

    Methods for efficient computation of numerical algorithms on a wide variety of MIMD machines are proposed. These techniques reorganize the data dependency patterns to improve the processor utilization. The model problem finds the time-accurate solution to a parabolic partial differential equation discretized in space and implicitly marched forward in time. The algorithms are extensions of Jacobi and SOR. The extensions consist of iterating over a window of several timesteps, allowing efficient overlap of computation with communication. The methods increase the degree to which work can be performed while data are communicated between processors. The effect of the window size and of domain partitioning on the system performance is examined both by implementing the algorithm on a simulated multiprocessor system.

  2. Towards developing robust algorithms for solving partial differential equations on MIMD machines

    NASA Technical Reports Server (NTRS)

    Saltz, Joel H.; Naik, Vijay K.

    1988-01-01

    Methods for efficient computation of numerical algorithms on a wide variety of MIMD machines are proposed. These techniques reorganize the data dependency patterns to improve the processor utilization. The model problem finds the time-accurate solution to a parabolic partial differential equation discretized in space and implicitly marched forward in time. The algorithms are extensions of Jacobi and SOR. The extensions consist of iterating over a window of several timesteps, allowing efficient overlap of computation with communication. The methods increase the degree to which work can be performed while data are communicated between processors. The effect of the window size and of domain partitioning on the system performance is examined both by implementing the algorithm on a simulated multiprocessor system.

  3. DEVELOPMENT OF SIZE-SPECIFIC DATA FROM PARTICULATE CONTROL TECHNOLOGY RESEARCH REPORTS

    EPA Science Inventory

    The report gives size-specific, uncontrolled emission factors and control efficiencies developed from many studies of particulate control device performance conducted under the direction of EPA's Air and Energy Engineering Research Laboratory (AEERL) between 1974 and 1981. The pa...

  4. SMART GUIDANCE AND SMARTE - TOOLS FOR DEVELOPING SITE SPECIFIC REDEVELOPMENT PLANS

    EPA Science Inventory

    Site-specific Management Approaches and Redevelopment Tools (SMART) Guidance and its electronic counterpart, SMARTe are being developed jointly with the German Federal Ministry of Education and Research and the Interstate Technology Regulatory Council. These products will assist ...

  5. THE DEVELOPMENT OF A PARAMETERIZED SCATTER REMOVAL ALGORITHM FOR NUCLEAR MATERIALS IDENTIFICATION SYSTEM IMAGING

    SciTech Connect

    Grogan, Brandon R

    2010-05-01

    This report presents a novel method for removing scattering effects from Nuclear Materials Identification System (NMIS) imaging. The NMIS uses fast neutron radiography to generate images of the internal structure of objects nonintrusively. If the correct attenuation through the object is measured, the positions and macroscopic cross sections of features inside the object can be determined. The cross sections can then be used to identify the materials, and a 3D map of the interior of the object can be reconstructed. Unfortunately, the measured attenuation values are always too low because scattered neutrons contribute to the unattenuated neutron signal. Previous efforts to remove the scatter from NMIS imaging have focused on minimizing the fraction of scattered neutrons that are misidentified as directly transmitted by electronically collimating and time tagging the source neutrons. The parameterized scatter removal algorithm (PSRA) approaches the problem from an entirely new direction by using Monte Carlo simulations to estimate the point scatter functions (PScFs) produced by neutrons scattering in the object. PScFs have been used to remove scattering successfully in other applications, but only with simple 2D detector models. This work represents the first time PScFs have ever been applied to an imaging detector geometry as complicated as the NMIS. By fitting the PScFs using a Gaussian function, they can be parameterized, and the proper scatter for a given problem can be removed without the need for rerunning the simulations each time. In order to model the PScFs, an entirely new method for simulating NMIS measurements was developed for this work. The development of the new models and the codes required to simulate them are presented in detail. The PSRA was used on several simulated and experimental measurements, and chi-squared goodness of fit tests were used to compare the corrected values to the ideal values that would be expected with no scattering. Using the

  6. The Development of a Parameterized Scatter Removal Algorithm for Nuclear Materials Identification System Imaging

    SciTech Connect

    Grogan, Brandon Robert

    2010-03-01

    This dissertation presents a novel method for removing scattering effects from Nuclear Materials Identification System (NMIS) imaging. The NMIS uses fast neutron radiography to generate images of the internal structure of objects non-intrusively. If the correct attenuation through the object is measured, the positions and macroscopic cross-sections of features inside the object can be determined. The cross sections can then be used to identify the materials and a 3D map of the interior of the object can be reconstructed. Unfortunately, the measured attenuation values are always too low because scattered neutrons contribute to the unattenuated neutron signal. Previous efforts to remove the scatter from NMIS imaging have focused on minimizing the fraction of scattered neutrons which are misidentified as directly transmitted by electronically collimating and time tagging the source neutrons. The parameterized scatter removal algorithm (PSRA) approaches the problem from an entirely new direction by using Monte Carlo simulations to estimate the point scatter functions (PScFs) produced by neutrons scattering in the object. PScFs have been used to remove scattering successfully in other applications, but only with simple 2D detector models. This work represents the first time PScFs have ever been applied to an imaging detector geometry as complicated as the NMIS. By fitting the PScFs using a Gaussian function, they can be parameterized and the proper scatter for a given problem can be removed without the need for rerunning the simulations each time. In order to model the PScFs, an entirely new method for simulating NMIS measurements was developed for this work. The development of the new models and the codes required to simulate them are presented in detail. The PSRA was used on several simulated and experimental measurements and chi-squared goodness of fit tests were used to compare the corrected values to the ideal values that would be expected with no scattering. Using

  7. Development of a Near Real-Time Hail Damage Swath Identification Algorithm for Vegetation

    NASA Technical Reports Server (NTRS)

    Bell, Jordan R.; Molthan, Andrew L.; Schultz, Kori A.; McGrath, Kevin M.; Burks, Jason E.

    2015-01-01

    Every year in the Midwest and Great Plains, widespread greenness forms in conjunction with the latter part of the spring-summer growing season. This prevalent greenness forms as a result of the high concentration of agricultural areas having their crops reach their maturity before the fall harvest. This time of year also coincides with an enhanced hail frequency for the Great Plains (Cintineo et al. 2012). These severe thunderstorms can bring damaging winds and large hail that can result in damage to the surface vegetation. The spatial extent of the damage can relatively small concentrated area or be a vast swath of damage that is visible from space. These large areas of damage have been well documented over the years. In the late 1960s aerial photography was used to evaluate crop damage caused by hail. As satellite remote sensing technology has evolved, the identification of these hail damage streaks has increased. Satellites have made it possible to view these streaks in additional spectrums. Parker et al. (2005) documented two streaks using the Moderate Resolution Imaging Spectroradiometer (MODIS) that occurred in South Dakota. He noted the potential impact that these streaks had on the surface temperature and associated surface fluxes that are impacted by a change in temperature. Gallo et al. (2012) examined at the correlation between radar signatures and ground observations from storms that produced a hail damage swath in Central Iowa also using MODIS. Finally, Molthan et al. (2013) identified hail damage streaks through MODIS, Landsat-7, and SPOT observations of different resolutions for the development of a potential near-real time applications. The manual analysis of hail damage streaks in satellite imagery is both tedious and time consuming, and may be inconsistent from event to event. This study focuses on development of an objective and automatic algorithm to detect these areas of damage in a more efficient and timely manner. This study utilizes the

  8. Strategies to develop strain-specific PCR based assays for probiotics.

    PubMed

    Treven, P

    2015-01-01

    Since health benefits conferred by probiotics are strain-specific, identification to the strain level is mandatory to allow the monitoring of the presence and the abundance of specific probiotic in a product or in a gastrointestinal tract. Compared to standard plate counts, the reduced duration of the assays and higher specificity makes PCR-based methods (standard PCR and quantitative PCR) very appropriate for detection or quantification of probiotics. Development of strain-specific assay consists of 4 main stages: (1) strain-specific marker identification; (2) construction of potential strain-specific primers; (3) validation on DNA from pure cultures of target and related strains; and (4) validation on spiked samples. The most important and also the most challenging step is the identification of strain-specific sequences, which can be subsequently targeted by specific primers or probes. Such regions can be identified on sequences derived from 16S-23S internally transcribed spacers, randomly amplified polymorphic DNA, representational difference analysis and suppression subtractive hybridisation. Already known phenotypic or genotypic characteristics of the target strain can also be used to develop the strain-specific assay. However, the initial stage of strain-specific assay development can be replaced by comparative genomics analysis of target genome with related genomes in public databases. Advances in whole genome sequencing (WGS) have resulted in a cost reduction for bacterial genome sequencing and consequently have made this approach available to most laboratories. In the present paper I reviewed the available literature on PCR and qPCR assays developed for detection of a specific probiotic strain and discussed future WGS and comparative genomics-based approaches.

  9. Development and validation of a linear recursive "Order- N" algorithm for the simulation of flexible space manipulator dynamics

    NASA Astrophysics Data System (ADS)

    Van Woerkom, P. Th. L. M.; de Boer, A.

    1995-01-01

    Robotic manipulators designed to operate on-board spacecraft and Space Stations are characterized by large spatial dimensions. The structural flexibility inherent in such manipulators introduces a noticeable and undesirable modification of the traditional rigid-body manipulator dynamics. As a result, the dynamics of the complete system comprising a flexible spacecraft or Space Station as a manipulator base, and an attached flexible manipulator, are also modified. Operational requirements related to high manoeuvre accuracy and modest manoeuvre duration, create the need for careful modelling and simulation of the dynamics of such systems. The objective of this paper is to outline the development and validation of an advanced algorithm for the simulation of the dynamics of such flexible spacecraft/space manipulator systems. The requirements imposed during the development of the present prototype dynamics simulator led to the modification and implementation of an existing linear recursive algorithm ("Order- N" algorithm), which requires a computational effort proportional to the number of component bodies in the system. Starting with the Lagrange form of the d'Alembert principle, we first deduce a parametric form which is found to yield—amongst others—the basic forms of the Newton-Euler, the d'Alembert and the Gauss dynamics principles. It is then shown how the application of each of the latter three principles can be made to lead graciously to the desired Order- N algorithm for the flexible multi-body system. The Order- N algorithm thus obtained and validated analytically, forms the basis for the prototype simulator REALDYN, designed to permit numerical simulation of the algorithm on UNIX workstations. Verification, numerical integration and further validation tests have been carried out. Some of the results obtained during the validation exercises could not be explained readily, even in the case of simple multi-body systems. The use of test tools and physical

  10. Development of a Controlled Material Specification for Alloy 617 for Nuclear Applications

    SciTech Connect

    Ren, Weiju

    2005-05-01

    Investigation is conducted in an effort to refine the standard specifications of Alloy 617 for the Very High Temperature Reactor applications. Background, motivation and rationale of the investigation are discussed. Historical data generated from various heats of the alloy are collected, sorted, and analyzed. The analyses include examination of mechanical property data and corresponding heat chemical composition, discussion on previous Alloy 617 specification development effort at the Oak Ridge National Laboratory, and assessment of the strengthening elements and mechanisms of the alloy. Based on the analyses, literature review, and knowledge of Ni base alloys, a tentative refined specification is recommended. Future work for verifying and improving the tentative refined specification is also suggested.

  11. Developments of aerosol retrieval algorithm for Geostationary Environmental Monitoring Spectrometer (GEMS) and the retrieval accuracy test

    NASA Astrophysics Data System (ADS)

    KIM, M.; Kim, J.; Jeong, U.; Ahn, C.; Bhartia, P. K.; Torres, O.

    2013-12-01

    A scanning UV-Visible spectrometer, the GEMS (Geostationary Environment Monitoring Spectrometer) onboard the GEO-KOMPSAT2B (Geostationary Korea Multi-Purpose Satellite) is planned to be launched in geostationary orbit in 2018. The GEMS employs hyper-spectral imaging with 0.6 nm resolution to observe solar backscatter radiation in the UV and Visible range. In the UV range, the low surface contribution to the backscattered radiation and strong interaction between aerosol absorption and molecular scattering can be advantageous in retrieving aerosol optical properties such as aerosol optical depth (AOD) and single scattering albedo (SSA). By taking the advantage, the OMI UV aerosol algorithm has provided information on the absorbing aerosol (Torres et al., 2007; Ahn et al., 2008). This study presents a UV-VIS algorithm to retrieve AOD and SSA from GEMS. The algorithm is based on the general inversion method, which uses pre-calculated look-up table with assumed aerosol properties and measurement condition. To obtain the retrieval accuracy, the error of the look-up table method occurred by the interpolation of pre-calculated radiances is estimated by using the reference dataset, and the uncertainties about aerosol type and height are evaluated. Also, the GEMS aerosol algorithm is tested with measured normalized radiance from OMI, a provisional data set for GEMS measurement, and the results are compared with the values from AERONET measurements over Asia. Additionally, the method for simultaneous retrieve of the AOD and aerosol height is discussed.

  12. Development of aerosol retrieval algorithm for Geostationary Environmental Monitoring Spectrometer (GEMS)

    NASA Astrophysics Data System (ADS)

    Kim, Mijin; Kim, Jhoon; Park, Sang Seo; Jeong, Ukkyo; Ahn, Changwoo; Bhartia, Pawan. K.; Torres, Omar; Song, Chang-Keun; Han, Jin-Seok

    2014-05-01

    A scanning UV-Visible spectrometer, the GEMS (Geostationary Environment Monitoring Spectrometer) onboard the GEO-KOMPSAT2B (Geostationary Korea Multi-Purpose Satellite) is planned to be launched in geostationary orbit in 2018. The GEMS employs hyper-spectral imaging with 0.6 nm resolution to observe solar backscatter radiation in the UV and Visible range. In the UV range, the low surface contribution to the backscattered radiation and strong interaction between aerosol absorption and molecular scattering can be advantageous in retrieving aerosol optical properties such as aerosol optical depth (AOD) and single scattering albedo (SSA). This study presents a UV-VIS algorithm to retrieve AOD and SSA from GEMS. The algorithm is based on the general inversion method, which uses pre-calculated look-up table (LUT) with assumed aerosol properties and measurement condition. To calculate LUT, aerosol optical properties over Asia [70°E-145°E, 0°N-50°N] are obtained from AERONET inversion data (level 2.0) at 46 AERONET sites, and are applied to VLIDORT (spur, 2006). Because the backscattering radiance in UV-Visible range has significant sensitivity to radiance absorptivity and size distribution of loading aerosol, aerosol types are classified from AERONET inversion data by using aerosol classification method suggested in Lee et al. (2010). Then the LUTs are calculated with average optical properties for each aerosol type. The GEMS aerosol algorithm is tested with OMI level-1B dataset, a provisional data for GEMS measurement. The aerosol types for each measured scene are selected by using both of UVAI and VISAI, and AOD and SSA are simultaneously retrieved by comparing simulated radiance with selected aerosol type and the measured value. The AOD and SSA retrieved from GEMS aerosol algorithm are well matched with OMI products, although the retrieved AOD is slightly higher than OMI value. To detect cloud pixel, spatial standard deviation test of radiance is applied in the

  13. Development stage-specific proteomic profiling uncovers small, lineage specific proteins most abundant in the Aspergillus Fumigatus conidial proteome

    PubMed Central

    2012-01-01

    Background The pathogenic mold Aspergillus fumigatus is the most frequent infectious cause of death in severely immunocompromised individuals such as leukemia and bone marrow transplant patients. Germination of inhaled conidia (asexual spores) in the host is critical for the initiation of infection, but little is known about the underlying mechanisms of this process. Results To gain insights into early germination events and facilitate the identification of potential stage-specific biomarkers and vaccine candidates, we have used quantitative shotgun proteomics to elucidate patterns of protein abundance changes during early fungal development. Four different stages were examined: dormant conidia, isotropically expanding conidia, hyphae in which germ tube emergence has just begun, and pre-septation hyphae. To enrich for glycan-linked cell wall proteins we used an alkaline cell extraction method. Shotgun proteomic resulted in the identification of 375 unique gene products with high confidence, with no evidence for enrichment of cell wall-immobilized and secreted proteins. The most interesting discovery was the identification of 52 proteins enriched in dormant conidia including 28 proteins that have never been detected in the A. fumigatus conidial proteome such as signaling protein Pil1, chaperones BipA and calnexin, and transcription factor HapB. Additionally we found many small, Aspergillus specific proteins of unknown function including 17 hypothetical proteins. Thus, the most abundant protein, Grg1 (AFUA_5G14210), was also one of the smallest proteins detected in this study (M.W. 7,367). Among previously characterized proteins were melanin pigment and pseurotin A biosynthesis enzymes, histones H3 and H4.1, and other proteins involved in conidiation and response to oxidative or hypoxic stress. In contrast, expanding conidia, hyphae with early germ tubes, and pre-septation hyphae samples were enriched for proteins responsible for housekeeping functions, particularly

  14. Lightning Jump Algorithm Development for the GOES·R Geostationary Lightning Mapper

    NASA Technical Reports Server (NTRS)

    Schultz. E.; Schultz. C.; Chronis, T.; Stough, S.; Carey, L.; Calhoun, K.; Ortega, K.; Stano, G.; Cecil, D.; Bateman, M.; Goodman, S.

    2014-01-01

    Current work on the lightning jump algorithm to be used in GOES-R Geostationary Lightning Mapper (GLM)'s data stream is multifaceted due to the intricate interplay between the storm tracking, GLM proxy data, and the performance of the lightning jump itself. This work outlines the progress of the last year, where analysis and performance of the lightning jump algorithm with automated storm tracking and GLM proxy data were assessed using over 700 storms from North Alabama. The cases analyzed coincide with previous semi-objective work performed using total lightning mapping array (LMA) measurements in Schultz et al. (2011). Analysis shows that key components of the algorithm (flash rate and sigma thresholds) have the greatest influence on the performance of the algorithm when validating using severe storm reports. Automated objective analysis using the GLM proxy data has shown probability of detection (POD) values around 60% with false alarm rates (FAR) around 73% using similar methodology to Schultz et al. (2011). However, when applying verification methods similar to those employed by the National Weather Service, POD values increase slightly (69%) and FAR values decrease (63%). The relationship between storm tracking and lightning jump has also been tested in a real-time framework at NSSL. This system includes fully automated tracking by radar alone, real-time LMA and radar observations and the lightning jump. Results indicate that the POD is strong at 65%. However, the FAR is significantly higher than in Schultz et al. (2011) (50-80% depending on various tracking/lightning jump parameters) when using storm reports for verification. Given known issues with Storm Data, the performance of the real-time jump algorithm is also being tested with high density radar and surface observations from the NSSL Severe Hazards Analysis & Verification Experiment (SHAVE).

  15. Passive microwave remote sensing of rainfall with SSM/I: Algorithm development and implementation

    NASA Technical Reports Server (NTRS)

    Ferriday, James G.; Avery, Susan K.

    1994-01-01

    A physically based algorithm sensitive to emission and scattering is used to estimate rainfall using the Special Sensor Microwave/Imager (SSM/I). The algorithm is derived from radiative transfer calculations through an atmospheric cloud model specifying vertical distributions of ice and liquid hydrometeors as a function of rain rate. The algorithm is structured in two parts: SSM/I brightness temperatures are screened to detect rainfall and are then used in rain-rate calculation. The screening process distinguishes between nonraining background conditions and emission and scattering associated with hydrometeors. Thermometric temperature and polarization thresholds determined from the radiative transfer calculations are used to detect rain, whereas the rain-rate calculation is based on a linear function fit to a linear combination of channels. Separate calculations for ocean and land account for different background conditions. The rain-rate calculation is constructed to respond to both emission and scattering, reduce extraneous atmospheric and surface effects, and to correct for beam filling. The resulting SSM/I rain-rate estimates are compared to three precipitation radars as well as to a dynamically simulated rainfall event. Global estimates from the SSM/I algorithm are also compared to continental and shipboard measurements over a 4-month period. The algorithm is found to accurately describe both localized instantaneous rainfall events and global monthly patterns over both land and ovean. Over land the 4-month mean difference between SSM/I and the Global Precipitation Climatology Center continental rain gauge database is less than 10%. Over the ocean, the mean difference between SSM/I and the Legates and Willmott global shipboard rain gauge climatology is less than 20%.

  16. Algorithm and simulation development in support of response strategies for contamination events in air and water systems.

    SciTech Connect

    Waanders, Bart Van Bloemen

    2006-01-01

    Chemical/Biological/Radiological (CBR) contamination events pose a considerable threat to our nation's infrastructure, especially in large internal facilities, external flows, and water distribution systems. Because physical security can only be enforced to a limited degree, deployment of early warning systems is being considered. However to achieve reliable and efficient functionality, several complex questions must be answered: (1) where should sensors be placed, (2) how can sparse sensor information be efficiently used to determine the location of the original intrusion, (3) what are the model and data uncertainties, (4) how should these uncertainties be handled, and (5) how can our algorithms and forward simulations be sufficiently improved to achieve real time performance? This report presents the results of a three year algorithmic and application development to support the identification, mitigation, and risk assessment of CBR contamination events. The main thrust of this investigation was to develop (1) computationally efficient algorithms for strategically placing sensors, (2) identification process of contamination events by using sparse observations, (3) characterization of uncertainty through developing accurate demands forecasts and through investigating uncertain simulation model parameters, (4) risk assessment capabilities, and (5) reduced order modeling methods. The development effort was focused on water distribution systems, large internal facilities, and outdoor areas.

  17. TH-E-BRE-07: Development of Dose Calculation Error Predictors for a Widely Implemented Clinical Algorithm

    SciTech Connect

    Egan, A; Laub, W

    2014-06-15

    Purpose: Several shortcomings of the current implementation of the analytic anisotropic algorithm (AAA) may lead to dose calculation errors in highly modulated treatments delivered to highly heterogeneous geometries. Here we introduce a set of dosimetric error predictors that can be applied to a clinical treatment plan and patient geometry in order to identify high risk plans. Once a problematic plan is identified, the treatment can be recalculated with more accurate algorithm in order to better assess its viability. Methods: Here we focus on three distinct sources dosimetric error in the AAA algorithm. First, due to a combination of discrepancies in smallfield beam modeling as well as volume averaging effects, dose calculated through small MLC apertures can be underestimated, while that behind small MLC blocks can overestimated. Second, due the rectilinear scaling of the Monte Carlo generated pencil beam kernel, energy is not properly transported through heterogeneities near, but not impeding, the central axis of the beamlet. And third, AAA overestimates dose in regions very low density (< 0.2 g/cm{sup 3}). We have developed an algorithm to detect the location and magnitude of each scenario within the patient geometry, namely the field-size index (FSI), the heterogeneous scatter index (HSI), and the lowdensity index (LDI) respectively. Results: Error indices successfully identify deviations between AAA and Monte Carlo dose distributions in simple phantom geometries. Algorithms are currently implemented in the MATLAB computing environment and are able to run on a typical RapidArc head and neck geometry in less than an hour. Conclusion: Because these error indices successfully identify each type of error in contrived cases, with sufficient benchmarking, this method can be developed into a clinical tool that may be able to help estimate AAA dose calculation errors and when it might be advisable to use Monte Carlo calculations.

  18. A novel hybrid classification model of genetic algorithms, modified k-Nearest Neighbor and developed backpropagation neural network.

    PubMed

    Salari, Nader; Shohaimi, Shamarina; Najafi, Farid; Nallappan, Meenakshii; Karishnarajah, Isthrinayagy

    2014-01-01

    Among numerous artificial intelligence approaches, k-Nearest Neighbor algorithms, genetic algorithms, and artificial neural networks are considered as the most common and effective methods in classification problems in numerous studies. In the present study, the results of the implementation of a novel hybrid feature selection-classification model using the above mentioned methods are presented. The purpose is benefitting from the synergies obtained from combining these technologies for the development of classification models. Such a combination creates an opportunity to invest in the strength of each algorithm, and is an approach to make up for their deficiencies. To develop proposed model, with the aim of obtaining the best array of features, first, feature ranking techniques such as the Fisher's discriminant ratio and class separability criteria were used to prioritize features. Second, the obtained results that included arrays of the top-ranked features were used as the initial population of a genetic algorithm to produce optimum arrays of features. Third, using a modified k-Nearest Neighbor method as well as an improved method of backpropagation neural networks, the classification process was advanced based on optimum arrays of the features selected by genetic algorithms. The performance of the proposed model was compared with thirteen well-known classification models based on seven datasets. Furthermore, the statistical analysis was performed using the Friedman test followed by post-hoc tests. The experimental findings indicated that the novel proposed hybrid model resulted in significantly better classification performance compared with all 13 classification methods. Finally, the performance results of the proposed model was benchmarked against the best ones reported as the state-of-the-art classifiers in terms of classification accuracy for the same data sets. The substantial findings of the comprehensive comparative study revealed that performance of the

  19. A novel hybrid classification model of genetic algorithms, modified k-Nearest Neighbor and developed backpropagation neural network.

    PubMed

    Salari, Nader; Shohaimi, Shamarina; Najafi, Farid; Nallappan, Meenakshii; Karishnarajah, Isthrinayagy

    2014-01-01

    Among numerous artificial intelligence approaches, k-Nearest Neighbor algorithms, genetic algorithms, and artificial neural networks are considered as the most common and effective methods in classification problems in numerous studies. In the present study, the results of the implementation of a novel hybrid feature selection-classification model using the above mentioned methods are presented. The purpose is benefitting from the synergies obtained from combining these technologies for the development of classification models. Such a combination creates an opportunity to invest in the strength of each algorithm, and is an approach to make up for their deficiencies. To develop proposed model, with the aim of obtaining the best array of features, first, feature ranking techniques such as the Fisher's discriminant ratio and class separability criteria were used to prioritize features. Second, the obtained results that included arrays of the top-ranked features were used as the initial population of a genetic algorithm to produce optimum arrays of features. Third, using a modified k-Nearest Neighbor method as well as an improved method of backpropagation neural networks, the classification process was advanced based on optimum arrays of the features selected by genetic algorithms. The performance of the proposed model was compared with thirteen well-known classification models based on seven datasets. Furthermore, the statistical analysis was performed using the Friedman test followed by post-hoc tests. The experimental findings indicated that the novel proposed hybrid model resulted in significantly better classification performance compared with all 13 classification methods. Finally, the performance results of the proposed model was benchmarked against the best ones reported as the state-of-the-art classifiers in terms of classification accuracy for the same data sets. The substantial findings of the comprehensive comparative study revealed that performance of the

  20. A Novel Hybrid Classification Model of Genetic Algorithms, Modified k-Nearest Neighbor and Developed Backpropagation Neural Network

    PubMed Central

    Salari, Nader; Shohaimi, Shamarina; Najafi, Farid; Nallappan, Meenakshii; Karishnarajah, Isthrinayagy

    2014-01-01

    Among numerous artificial intelligence approaches, k-Nearest Neighbor algorithms, genetic algorithms, and artificial neural networks are considered as the most common and effective methods in classification problems in numerous studies. In the present study, the results of the implementation of a novel hybrid feature selection-classification model using the above mentioned methods are presented. The purpose is benefitting from the synergies obtained from combining these technologies for the development of classification models. Such a combination creates an opportunity to invest in the strength of each algorithm, and is an approach to make up for their deficiencies. To develop proposed model, with the aim of obtaining the best array of features, first, feature ranking techniques such as the Fisher's discriminant ratio and class separability criteria were used to prioritize features. Second, the obtained results that included arrays of the top-ranked features were used as the initial population of a genetic algorithm to produce optimum arrays of features. Third, using a modified k-Nearest Neighbor method as well as an improved method of backpropagation neural networks, the classification process was advanced based on optimum arrays of the features selected by genetic algorithms. The performance of the proposed model was compared with thirteen well-known classification models based on seven datasets. Furthermore, the statistical analysis was performed using the Friedman test followed by post-hoc tests. The experimental findings indicated that the novel proposed hybrid model resulted in significantly better classification performance compared with all 13 classification methods. Finally, the performance results of the proposed model was benchmarked against the best ones reported as the state-of-the-art classifiers in terms of classification accuracy for the same data sets. The substantial findings of the comprehensive comparative study revealed that performance of the

  1. Algorithm Development and Validation of CDOM Properties for Estuarine and Continental Shelf Waters Along the Northeastern U.S. Coast

    NASA Technical Reports Server (NTRS)

    Mannino, Antonio; Novak, Michael G.; Hooker, Stanford B.; Hyde, Kimberly; Aurin, Dick

    2014-01-01

    An extensive set of field measurements have been collected throughout the continental margin of the northeastern U.S. from 2004 to 2011 to develop and validate ocean color satellite algorithms for the retrieval of the absorption coefficient of chromophoric dissolved organic matter (aCDOM) and CDOM spectral slopes for the 275:295 nm and 300:600 nm spectral range (S275:295 and S300:600). Remote sensing reflectance (Rrs) measurements computed from in-water radiometry profiles along with aCDOM() data are applied to develop several types of algorithms for the SeaWiFS and MODIS-Aqua ocean color satellite sensors, which involve least squares linear regression of aCDOM() with (1) Rrs band ratios, (2) quasi-analytical algorithm-based (QAA based) products of total absorption coefficients, (3) multiple Rrs bands within a multiple linear regression (MLR) analysis, and (4) diffuse attenuation coefficient (Kd). The relative error (mean absolute percent difference; MAPD) for the MLR retrievals of aCDOM(275), aCDOM(355), aCDOM(380), aCDOM(412) and aCDOM(443) for our study region range from 20.4-23.9 for MODIS-Aqua and 27.3-30 for SeaWiFS. Because of the narrower range of CDOM spectral slope values, the MAPD for the MLR S275:295 and QAA-based S300:600 algorithms are much lower ranging from 9.9 and 8.3 for SeaWiFS, respectively, and 8.7 and 6.3 for MODIS, respectively. Seasonal and spatial MODIS-Aqua and SeaWiFS distributions of aCDOM, S275:295 and S300:600 processed with these algorithms are consistent with field measurements and the processes that impact CDOM levels along the continental shelf of the northeastern U.S. Several satellite data processing factors correlate with higher uncertainty in satellite retrievals of aCDOM, S275:295 and S300:600 within the coastal ocean, including solar zenith angle, sensor viewing angle, and atmospheric products applied for atmospheric corrections. Algorithms that include ultraviolet Rrs bands provide a better fit to field measurements than

  2. Development of a Real-Time Pulse Processing Algorithm for TES-Based X-Ray Microcalorimeters

    NASA Technical Reports Server (NTRS)

    Tan, Hui; Hennig, Wolfgang; Warburton, William K.; Doriese, W. Bertrand; Kilbourne, Caroline A.

    2011-01-01

    We report here a real-time pulse processing algorithm for superconducting transition-edge sensor (TES) based x-ray microcalorimeters. TES-based. microca1orimeters offer ultra-high energy resolutions, but the small volume of each pixel requires that large arrays of identical microcalorimeter pixe1s be built to achieve sufficient detection efficiency. That in turn requires as much pulse processing as possible must be performed at the front end of readout electronics to avoid transferring large amounts of data to a host computer for post-processing. Therefore, a real-time pulse processing algorithm that not only can be implemented in the readout electronics but also achieve satisfactory energy resolutions is desired. We have developed an algorithm that can be easily implemented. in hardware. We then tested the algorithm offline using several data sets acquired with an 8 x 8 Goddard TES x-ray calorimeter array and 2x16 NIST time-division SQUID multiplexer. We obtained an average energy resolution of close to 3.0 eV at 6 keV for the multiplexed pixels while preserving over 99% of the events in the data sets.

  3. Development and application of an algorithm for detecting Phaeocystis globosa blooms in the Case 2 Southern North Sea waters

    PubMed Central

    Astoreca, Rosa; Rousseau, Véronique; Ruddick, Kevin; Knechciak, Cécile; Van Mol, Barbara; Parent, Jean-Yves; Lancelot, Christiane

    2009-01-01

    While mapping algal blooms from space is now well-established, mapping undesirable algal blooms in eutrophicated coastal waters raises further challenge in detecting individual phytoplankton species. In this paper, an algorithm is developed and tested for detecting Phaeocystis globosa blooms in the Southern North Sea. For this purpose, we first measured the light absorption properties of two phytoplankton groups, P. globosa and diatoms, in laboratory-controlled experiments. The main spectral difference between both groups was observed at 467 nm due to the absorption of the pigment chlorophyll c3 only present in P. globosa, suggesting that the absorption at 467 nm can be used to detect this alga in the field. A Phaeocystis-detection algorithm is proposed to retrieve chlorophyll c3 using either total absorption or water-leaving reflectance field data. Application of this algorithm to absorption and reflectance data from Phaeocystis-dominated natural communities shows positive results. Comparison with pigment concentrations and cell counts suggests that the algorithm can flag the presence of P. globosa and provide quantitative information above a chlorophyll c3 threshold of 0.3 mg m−3 equivalent to a P. globosa cell density of 3 × 106 cells L−1. Finally, the possibility of extrapolating this information to remote sensing reflectance data in these turbid waters is evaluated. PMID:19461860

  4. The development of a line-scan imaging algorithm for the detection of fecal contamination on leafy geens

    NASA Astrophysics Data System (ADS)

    Yang, Chun-Chieh; Kim, Moon S.; Chuang, Yung-Kun; Lee, Hoyoung

    2013-05-01

    This paper reports the development of a multispectral algorithm, using the line-scan hyperspectral imaging system, to detect fecal contamination on leafy greens. Fresh bovine feces were applied to the surfaces of washed loose baby spinach leaves. A hyperspectral line-scan imaging system was used to acquire hyperspectral fluorescence images of the contaminated leaves. Hyperspectral image analysis resulted in the selection of the 666 nm and 688 nm wavebands for a multispectral algorithm to rapidly detect feces on leafy greens, by use of the ratio of fluorescence intensities measured at those two wavebands (666 nm over 688 nm). The algorithm successfully distinguished most of the lowly diluted fecal spots (0.05 g feces/ml water and 0.025 g feces/ml water) and some of the highly diluted spots (0.0125 g feces/ml water and 0.00625 g feces/ml water) from the clean spinach leaves. The results showed the potential of the multispectral algorithm with line-scan imaging system for application to automated food processing lines for food safety inspection of leafy green vegetables.

  5. Three-dimensional graphics simulator for testing mine machine computer-controlled algorithms -- phase 1 development

    SciTech Connect

    Ambrose, D.H. )

    1993-01-01

    Using three-dimensional (3-D) graphics computing to evaluate new technologies for computer-assisted mining systems illustrates how these visual techniques can redefine the way researchers look at raw scientific data. The US Bureau of Mines is using 3-D graphics computing to obtain cheaply, easily, and quickly information about the operation and design of current and proposed mechanical coal and metal-nonmetal mining systems. Bureau engineers developed a graphics simulator for a continuous miner that enables a realistic test for experimental software that controls the functions of a machine. Some of the specific simulated functions of the continuous miner are machine motion, appendage motion, machine position, and machine sensors. The simulator uses data files generated in the laboratory or mine using a computer-assisted mining machine. The data file contains information from a laser-based guidance system and a data acquisition system that records all control commands given to a computer-assisted mining machine. This report documents the first phase in developing the simulator and discusses simulator requirements, features of the initial simulator, and several examples of its application. During this endeavor, Bureau engineers discovered and appreciated the simulator's potential to assist their investigations of machine controls and navigation systems.

  6. 15 CFR 9.4 - Development of voluntary energy conservation specifications.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 15 Commerce and Foreign Trade 1 2011-01-01 2011-01-01 false Development of voluntary energy... PROCEDURES FOR A VOLUNTARY LABELING PROGRAM FOR HOUSEHOLD APPLIANCES AND EQUIPMENT TO EFFECT ENERGY CONSERVATION § 9.4 Development of voluntary energy conservation specifications. (a) The Secretary...

  7. The design and development of signal-processing algorithms for an airborne x-band Doppler weather radar

    NASA Technical Reports Server (NTRS)

    Nicholson, Shaun R.

    1994-01-01

    Improved measurements of precipitation will aid our understanding of the role of latent heating on global circulations. Spaceborne meteorological sensors such as the planned precipitation radar and microwave radiometers on the Tropical Rainfall Measurement Mission (TRMM) provide for the first time a comprehensive means of making these global measurements. Pre-TRMM activities include development of precipitation algorithms using existing satellite data, computer simulations, and measurements from limited aircraft campaigns. Since the TRMM radar will be the first spaceborne precipitation radar, there is limited experience with such measurements, and only recently have airborne radars become available that can attempt to address the issue of the limitations of a spaceborne radar. There are many questions regarding how much attenuation occurs in various cloud types and the effect of cloud vertical motions on the estimation of precipitation rates. The EDOP program being developed by NASA GSFC will provide data useful for testing both rain-retrieval algorithms and the importance of vertical motions on the rain measurements. The purpose of this report is to describe the design and development of real-time embedded parallel algorithms used by EDOP to extract reflectivity and Doppler products (velocity, spectrum width, and signal-to-noise ratio) as the first step in the aforementioned goals.

  8. Dendritic Cells Coordinate the Development and Homeostasis of Organ-Specific Regulatory T Cells.

    PubMed

    Leventhal, Daniel S; Gilmore, Dana C; Berger, Julian M; Nishi, Saki; Lee, Victoria; Malchow, Sven; Kline, Douglas E; Kline, Justin; Vander Griend, Donald J; Huang, Haochu; Socci, Nicholas D; Savage, Peter A

    2016-04-19

    Although antigen recognition mediated by the T cell receptor (TCR) influences many facets of Foxp3(+) regulatory T (Treg) cell biology, including development and function, the cell types that present antigen to Treg cells in vivo remain largely undefined. By tracking a clonal population of Aire-dependent, prostate-specific Treg cells in mice, we demonstrated an essential role for dendritic cells (DCs) in regulating organ-specific Treg cell biology. We have shown that the thymic development of prostate-specific Treg cells required antigen presentation by DCs. Moreover, Batf3-dependent CD8α(+) DCs were dispensable for the development of this clonotype and had negligible impact on the polyclonal Treg cell repertoire. In the periphery, CCR7-dependent migratory DCs coordinated the activation of organ-specific Treg cells in the prostate-draining lymph nodes. Our results demonstrate that the development and peripheral regulation of organ-specific Treg cells are dependent on antigen presentation by DCs, implicating DCs as key mediators of organ-specific immune tolerance.

  9. Ocean Observations with EOS/MODIS: Algorithm Development and Post Launch Studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.; Conboy, B. (Technical Monitor)

    1999-01-01

    Significant accomplishments made during the present reporting period include: 1) Installed spectral optimization algorithm in the SeaDas image processing environment and successfully processed SeaWiFS imagery. The results were superior to the standard SeaWiFS algorithm (the MODIS prototype) in a turbid atmosphere off the US East Coast, but similar in a clear (typical) oceanic atmosphere; 2) Inverted ACE-2 LIDAR measurements coupled with sun photometer-derived aerosol optical thickness to obtain the vertical profile of aerosol optical thickness. The profile was validated with simultaneous aircraft measurements; and 3) Obtained LIDAR and CIMEL measurements of typical maritime and mineral dust-dominated marine atmosphere in the U.S. Virgin Islands. Contemporaneous SeaWiFS imagery were also acquired.

  10. Development of an anthropomorphic breast software phantom based on region growing algorithm

    NASA Astrophysics Data System (ADS)

    Zhang, Cuiping; Bakic, Predrag R.; Maidment, Andrew D. A.

    2008-03-01

    Software breast phantoms offer greater flexibility in generating synthetic breast images compared to physical phantoms. The realism of such generated synthetic images depends on the method for simulating the three-dimensional breast anatomical structures. We present here a novel algorithm for computer simulation of breast anatomy. The algorithm simulates the skin, regions of predominantly adipose tissue and fibro-glandular tissue, and the matrix of adipose tissue compartments and Cooper's ligaments. The simulation approach is based upon a region growing procedure; adipose compartments are grown from a selected set of seed points with different orientation and growth rate. The simulated adipose compartments vary in shape and size similarly to the anatomical breast variation, resulting in much improved phantom realism compared to our previous simulation based on geometric primitives. The proposed simulation also has an improved control over the breast size and glandularity. Our software breast phantom has been used in a number of applications, including breast tomosynthesis and texture analysis optimization.

  11. Contact solution algorithms

    NASA Technical Reports Server (NTRS)

    Tielking, John T.

    1989-01-01

    Two algorithms for obtaining static contact solutions are described in this presentation. Although they were derived for contact problems involving specific structures (a tire and a solid rubber cylinder), they are sufficiently general to be applied to other shell-of-revolution and solid-body contact problems. The shell-of-revolution contact algorithm is a method of obtaining a point load influence coefficient matrix for the portion of shell surface that is expected to carry a contact load. If the shell is sufficiently linear with respect to contact loading, a single influence coefficient matrix can be used to obtain a good approximation of the contact pressure distribution. Otherwise, the matrix will be updated to reflect nonlinear load-deflection behavior. The solid-body contact algorithm utilizes a Lagrange multiplier to include the contact constraint in a potential energy functional. The solution is found by applying the principle of minimum potential energy. The Lagrange multiplier is identified as the contact load resultant for a specific deflection. At present, only frictionless contact solutions have been obtained with these algorithms. A sliding tread element has been developed to calculate friction shear force in the contact region of the rolling shell-of-revolution tire model.

  12. Ocean observations with EOS/MODIS: Algorithm development and post launch studies

    NASA Technical Reports Server (NTRS)

    Gordon, Howard R.

    1996-01-01

    An investigation of the influence of stratospheric aerosol on the performance of the atmospheric correction algorithm is nearly complete. The results indicate how the performance of the algorithm is degraded if the stratospheric aerosol is ignored. Use of the MODIS 1380 nm band to effect a correction for stratospheric aerosols was also studied. Simple algorithms such as subtracting the reflectance at 1380 nm from the visible and near infrared bands can significantly reduce the error; however, only if the diffuse transmittance of the aerosol layer is taken into account. The atmospheric correction code has been modified for use with absorbing aerosols. Tests of the code showed that, in contrast to non absorbing aerosols, the retrievals were strongly influenced by the vertical structure of the aerosol, even when the candidate aerosol set was restricted to a set appropriate to the absorbing aerosol. This will further complicate the problem of atmospheric correction in an atmosphere with strongly absorbing aerosols. Our whitecap radiometer system and solar aureole camera were both tested at sea and performed well. Investigation of a technique to remove the effects of residual instrument polarization sensitivity were initiated and applied to an instrument possessing (approx.) 3-4 times the polarization sensitivity expected for MODIS. Preliminary results suggest that for such an instrument, elimination of the polarization effect is possible at the required level of accuracy by estimating the polarization of the top-of-atmosphere radiance to be that expected for a pure Rayleigh scattering atmosphere. This may be of significance for design of a follow-on MODIS instrument. W.M. Balch participated on two month-long cruises to the Arabian sea, measuring coccolithophore abundance, production, and optical properties. A thorough understanding of the relationship between calcite abundance and light scatter, in situ, will provide the basis for a generic suspended calcite algorithm.

  13. Development of a Computer-Aided-Design-Based Geometry and Mesh Movement Algorithm for Three-Dimensional Aerodynamic Shape Optimization

    NASA Astrophysics Data System (ADS)

    Truong, Anh Hoang

    This thesis focuses on the development of a Computer-Aided-Design (CAD)-based geometry parameterization method and a corresponding surface mesh movement algorithm suitable for three-dimensional aerodynamic shape optimization. The geometry parameterization method includes a geometry control tool to aid in the construction and manipulation of a CAD geometry through a vendor-neutral application interface, CAPRI. It automates the tedious part of the construction phase involving data entry and provides intuitive and effective design variables that allow for both the flexibility and the precision required to control the movement of the geometry. The surface mesh movement algorithm, on the other hand, transforms an initial structured surface mesh to fit the new geometry using a discrete representation of the new CAD surface provided by CAPRI. Using a unique mapping procedure, the algorithm not only preserves the characteristics of the original surface mesh, but also guarantees that the new mesh points are on the CAD geometry. The new surface mesh is then smoothed in the parametric space before it is transformed back into three-dimensional space. The procedure is efficient in that all the processing is done in the parametric space, incurring minimal computational cost. The geometry parameterization and mesh movement tools are integrated into a three-dimensional shape optimization framework, with a linear-elasticity volume-mesh movement algorithm, a Newton-Krylov flow solver for the Euler equations, and a gradient-based optimizer. The validity and accuracy of the CAD-based optimization algorithm are demonstrated through a number of verification and optimization cases.

  14. Development of olfactory projection neuron dendrites that contribute to wiring specificity of the Drosophila olfactory circuit.

    PubMed

    Sakuma, Chisako; Anzo, Marie; Miura, Masayuki; Chihara, Takahiro

    2014-01-01

    The antennal lobe (AL) of Drosophila is the first olfactory processing center in which olfactory input and output are spatially organized into distinct channels via glomeruli to form a discrete neural map. In each glomerulus, the axons of a single type of olfactory receptor neurons (ORNs) synapse with the dendrites of a single type of projection neurons (PNs). The AL is an ideal place to study how the wiring specificity between specific types of ORNs and PNs is established during development. During the past two decades, the involvement of diverse molecules in the specification and patterning of ORNs and PNs has been reported. Furthermore, local interneurons-another component of glomeruli-have been recently catalogued and their functions have been gradually dissected. Although there is accumulating knowledge about the involvement of these three cell types in the wiring specificity of the olfactory system, in this review, we focus especially on the development of PN dendrites.

  15. Assessing Species-specific Contributions To Craniofacial Development Using Quail-duck Chimeras

    PubMed Central

    Fish, Jennifer L.; Schneider, Richard A.

    2014-01-01

    The generation of chimeric embryos is a widespread and powerful approach to study cell fates, tissue interactions, and species-specific contributions to the histological and morphological development of vertebrate embryos. In particular, the use of chimeric embryos has established the importance of neural crest in directing the species-specific morphology of the craniofacial complex. The method described herein utilizes two avian species, duck and quail, with remarkably different craniofacial morphology. This method greatly facilitates the investigation of molecular and cellular regulation of species-specific pattern in the craniofacial complex. Experiments in quail and duck chimeric embryos have already revealed neural crest-mediated tissue interactions and cell-autonomous behaviors that regulate species-specific pattern in the craniofacial skeleton, musculature, and integument. The great diversity of neural crest derivatives suggests significant potential for future applications of the quail-duck chimeric system to understanding vertebrate development, disease, and evolution. PMID:24962088

  16. Development and validation of an automated operational modal analysis algorithm for vibration-based monitoring and tensile load estimation

    NASA Astrophysics Data System (ADS)

    Rainieri, Carlo; Fabbrocino, Giovanni

    2015-08-01

    In the last few decades large research efforts have been devoted to the development of methods for automated detection of damage and degradation phenomena at an early stage. Modal-based damage detection techniques are well-established methods, whose effectiveness for Level 1 (existence) and Level 2 (location) damage detection is demonstrated by several studies. The indirect estimation of tensile loads in cables and tie-rods is another attractive application of vibration measurements. It provides interesting opportunities for cheap and fast quality checks in the construction phase, as well as for safety evaluations and structural maintenance over the structure lifespan. However, the lack of automated modal identification and tracking procedures has been for long a relevant drawback to the extensive application of the above-mentioned techniques in the engineering practice. An increasing number of field applications of modal-based structural health and performance assessment are appearing after the development of several automated output-only modal identification procedures in the last few years. Nevertheless, additional efforts are still needed to enhance the robustness of automated modal identification algorithms, control the computational efforts and improve the reliability of modal parameter estimates (in particular, damping). This paper deals with an original algorithm for automated output-only modal parameter estimation. Particular emphasis is given to the extensive validation of the algorithm based on simulated and real datasets in view of continuous monitoring applications. The results point out that the algorithm is fairly robust and demonstrate its ability to provide accurate and precise estimates of the modal parameters, including damping ratios. As a result, it has been used to develop systems for vibration-based estimation of tensile loads in cables and tie-rods. Promising results have been achieved for non-destructive testing as well as continuous

  17. Development and validation of a novel pedometer algorithm to quantify extended characteristics of the locomotor behavior of dairy cows.

    PubMed

    Alsaaod, M; Niederhauser, J J; Beer, G; Zehner, N; Schuepbach-Regula, G; Steiner, A

    2015-09-01

    Behavior is one of the most important indicators for assessing cattle health and well-being. The objective of this study was to develop and validate a novel algorithm to monitor locomotor behavior of loose-housed dairy cows based on the output of the RumiWatch pedometer (ITIN+HOCH GmbH, Fütterungstechnik, Liestal, Switzerland). Data of locomotion were acquired by simultaneous pedometer measurements at a sampling rate of 10 Hz and video recordings for manual observation later. The study consisted of 3 independent experiments. Experiment 1 was carried out to develop and validate the algorithm for lying behavior, experiment 2 for walking and standing behavior, and experiment 3 for stride duration and stride length. The final version was validated, using the raw data, collected from cows not included in the development of the algorithm. Spearman correlation coefficients were calculated between accelerometer variables and respective data derived from the video recordings (gold standard). Dichotomous data were expressed as the proportion of correctly detected events, and the overall difference for continuous data was expressed as the relative measurement error. The proportions for correctly detected events or bouts were 1 for stand ups, lie downs, standing bouts, and lying bouts and 0.99 for walking bouts. The relative measurement error and Spearman correlation coefficient for lying time were 0.09% and 1; for standing time, 4.7% and 0.96; for walking time, 17.12% and 0.96; for number of strides, 6.23% and 0.98; for stride duration, 6.65% and 0.75; and for stride length, 11.92% and 0.81, respectively. The strong to very high correlations of the variables between visual observation and converted pedometer data indicate that the novel RumiWatch algorithm may markedly improve automated livestock management systems for efficient health monitoring of dairy cows. PMID:26142842

  18. Development and validation of a segmentation-free polyenergetic algorithm for dynamic perfusion computed tomography.

    PubMed

    Lin, Yuan; Samei, Ehsan

    2016-07-01

    Dynamic perfusion imaging can provide the morphologic details of the scanned organs as well as the dynamic information of blood perfusion. However, due to the polyenergetic property of the x-ray spectra, beam hardening effect results in undesirable artifacts and inaccurate CT values. To address this problem, this study proposes a segmentation-free polyenergetic dynamic perfusion imaging algorithm (pDP) to provide superior perfusion imaging. Dynamic perfusion usually is composed of two phases, i.e., a precontrast phase and a postcontrast phase. In the precontrast phase, the attenuation properties of diverse base materials (e.g., in a thorax perfusion exam, base materials can include lung, fat, breast, soft tissue, bone, and metal implants) can be incorporated to reconstruct artifact-free precontrast images. If patient motions are negligible or can be corrected by registration, the precontrast images can then be employed as a priori information to derive linearized iodine projections from the postcontrast images. With the linearized iodine projections, iodine perfusion maps can be reconstructed directly without the influence of various influential factors, such as iodine location, patient size, x-ray spectrum, and background tissue type. A series of simulations were conducted on a dynamic iodine calibration phantom and a dynamic anthropomorphic thorax phantom to validate the proposed algorithm. The simulations with the dynamic iodine calibration phantom showed that the proposed algorithm could effectively eliminate the beam hardening effect and enable quantitative iodine map reconstruction across various influential factors. The error range of the iodine concentration factors ([Formula: see text]) was reduced from [Formula: see text] for filtered back-projection (FBP) to [Formula: see text] for pDP. The quantitative results of the simulations with the dynamic anthropomorphic thorax phantom indicated that the maximum error of iodine concentrations can be reduced from

  19. Development of isoform-specific sensors of polypeptide GalNAc-transferase activity.

    PubMed

    Song, Lina; Bachert, Collin; Schjoldager, Katrine T; Clausen, Henrik; Linstedt, Adam D

    2014-10-31

    Humans express up to 20 isoforms of GalNAc-transferase (herein T1-T20) that localize to the Golgi apparatus and initiate O-glycosylation. Regulation of this enzyme family affects a vast array of proteins transiting the secretory pathway and diseases arise upon misregulation of specific isoforms. Surprisingly, molecular probes to monitor GalNAc-transferase activity are lacking and there exist no effective global or isoform-specific inhibitors. Here we describe the development of T2- and T3-isoform specific fluorescence sensors that traffic in the secretory pathway. Each sensor yielded little signal when glycosylated but was strongly activated in the absence of its glycosylation. Specificity of each sensor was assessed in HEK cells with either the T2 or T3 enzymes deleted. Although the sensors are based on specific substrates of the T2 and T3 enzymes, elements in or near the enzyme recognition sequence influenced their activity and required modification, which we carried out based on previous in vitro work. Significantly, the modified T2 and T3 sensors were activated only in cells lacking their corresponding isozymes. Thus, we have developed T2- and T3-specific sensors that will be valuable in both the study of GalNAc-transferase regulation and in high-throughput screening for potential therapeutic regulators of specific GalNAc-transferases.

  20. Drowsiness/alertness algorithm development and validation using synchronized EEG and cognitive performance to individualize a generalized model

    PubMed Central

    Johnson, Robin R.; Popovic, Djordje P.; Olmstead, Richard E.; Stikic, Maja; Levendowski, Daniel J.; Berka, Chris

    2011-01-01

    A great deal of research over the last century has focused on drowsiness/alertness detection, as fatigue-related physical and cognitive impairments pose a serious risk to public health and safety. Available drowsiness/alertn